BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8180
         (471 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IJY|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
           Frizzled 8 (Mfz8)
 pdb|1IJY|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
           Frizzled 8 (Mfz8)
          Length = 130

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 19  PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
           PL+   CS  ++FFLCS+Y P+C E     +P CR +CE  KA C P +    F  P   
Sbjct: 49  PLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRM 108

Query: 79  NCSRFPVSEN-NGLCMQ 94
            C R P   N + LCM 
Sbjct: 109 RCDRLPEQGNPDTLCMD 125


>pdb|4F0A|A Chain A, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 132

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 19  PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
           PL+   CS  ++FFLCS+Y P+C E     +P CR +CE  KA C P +    F  P   
Sbjct: 47  PLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRM 106

Query: 79  NCSRFPVSEN-NGLCMQ 94
            C R P   N + LCM 
Sbjct: 107 RCDRLPEQGNPDTLCMD 123


>pdb|1IJX|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|C Chain C, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|D Chain D, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|E Chain E, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|F Chain F, Crystal Structure Of The Cysteine-Rich Domain Of Secreted
           Frizzled- Related Protein 3 (Sfrp-3;fzb)
          Length = 127

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 5   SMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCS-EHVIGAIPSCRGLCEDVKADC 63
           S   N +  ++    L+ ++CS  + FFLC++YAP+C+ +     I  C+ +CE  +  C
Sbjct: 30  STQANAILAMEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGC 89

Query: 64  LPTLTALNFILPPLFNCSRFPVSENNGLCM 93
            P L       P    C   PV  + G+C+
Sbjct: 90  EPILIKYRHSWPESLACDELPVY-DRGVCI 118


>pdb|4GUP|A Chain A, Structure Of Mhc-Class I Related Molecule Mr1
 pdb|4GUP|C Chain C, Structure Of Mhc-Class I Related Molecule Mr1
          Length = 271

 Score = 28.9 bits (63), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 441 WSSKTCRSWTKLFVSPGCSLKPRTLPPVARV 471
           W  + C +W K F+  G     RT PP+ RV
Sbjct: 157 WLEEECIAWLKRFLEYGKDTLQRTEPPLVRV 187


>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
 pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
 pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
 pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
          Length = 221

 Score = 28.5 bits (62), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 93  MQNPINERKEKYTAPPKPKPLTCPRNFIATQYLQ 126
           +Q PIN   ++YT PP P P    + +I+ Q ++
Sbjct: 5   IQTPINTMSQQYTLPPLPYPYDALQPYISQQIME 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,283,583
Number of Sequences: 62578
Number of extensions: 485756
Number of successful extensions: 1381
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 7
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)