Query psy8180
Match_columns 471
No_of_seqs 224 out of 627
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:38:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01534 Frizzled: Frizzled/Sm 100.0 8.1E-83 1.8E-87 639.8 33.1 319 139-459 2-328 (328)
2 KOG3577|consensus 100.0 3.7E-84 8E-89 691.5 16.6 454 2-460 65-544 (556)
3 cd07465 CRD_FZ1 Cysteine-rich 99.9 7.1E-27 1.5E-31 203.3 7.3 97 2-99 27-123 (127)
4 PF05462 Dicty_CAR: Slime mold 99.9 1.9E-24 4.2E-29 216.0 24.6 254 141-445 2-259 (303)
5 cd07466 CRD_FZ7 Cysteine-rich 99.9 1.3E-26 2.7E-31 201.2 7.2 96 2-98 27-122 (125)
6 cd07460 CRD_FZ5 Cysteine-rich 99.9 1.4E-26 3.1E-31 201.2 6.9 97 2-98 27-124 (127)
7 cd07462 CRD_FZ10 Cysteine-rich 99.9 1.8E-26 3.9E-31 200.6 7.3 97 2-98 27-124 (127)
8 cd07441 CRD_SFRP3 Cysteine-ric 99.9 1.4E-26 3E-31 200.6 6.5 97 2-99 26-123 (126)
9 cd07464 CRD_FZ2 Cysteine-rich 99.9 2E-26 4.4E-31 200.3 7.2 97 2-99 27-123 (127)
10 cd07442 CRD_SFRP4 Cysteine-ric 99.9 1.5E-26 3.3E-31 200.6 5.9 96 2-98 27-123 (127)
11 cd07463 CRD_FZ9 Cysteine-rich 99.9 2.5E-26 5.4E-31 199.9 6.7 97 2-98 27-124 (127)
12 cd07461 CRD_FZ8 Cysteine-rich 99.9 2.5E-26 5.5E-31 199.5 6.7 96 2-97 27-123 (125)
13 cd07458 CRD_FZ1_like Cysteine- 99.9 3.9E-26 8.5E-31 196.8 6.8 94 2-96 25-118 (119)
14 cd07448 CRD_FZ4 Cysteine-rich 99.9 5E-26 1.1E-30 198.3 7.2 97 2-98 26-123 (126)
15 cd07457 CRD_FZ9_like Cysteine- 99.9 5.3E-26 1.2E-30 196.7 6.8 95 2-96 25-120 (121)
16 cd07454 CRD_LIN_17 Cysteine-ri 99.9 5.5E-26 1.2E-30 197.1 6.6 95 2-98 27-121 (124)
17 cd07888 CRD_corin_2 One of two 99.9 5.8E-26 1.3E-30 196.6 6.7 96 2-97 24-122 (122)
18 cd07456 CRD_FZ5_like Cysteine- 99.9 7.6E-26 1.7E-30 195.5 6.9 95 2-96 24-119 (120)
19 cd07449 CRD_FZ3 Cysteine-rich 99.9 8.2E-26 1.8E-30 195.8 6.9 96 2-98 27-123 (127)
20 cd07446 CRD_SFRP2 Cysteine-ric 99.9 1.8E-25 3.9E-30 194.8 6.7 95 2-98 29-123 (128)
21 cd07453 CRD_crescent Cysteine- 99.9 1.6E-24 3.6E-29 189.6 7.9 93 2-99 27-119 (135)
22 cd07445 CRD_corin_1 One of two 99.9 1.3E-24 2.8E-29 188.2 6.3 93 3-96 28-127 (130)
23 cd07450 CRD_FZ6 Cysteine-rich 99.9 2.6E-24 5.6E-29 186.7 7.1 85 2-87 27-111 (127)
24 cd07443 CRD_SFRP1 Cysteine-ric 99.9 2.3E-24 4.9E-29 186.5 6.5 90 2-97 31-120 (124)
25 cd07444 CRD_SFRP5 Cysteine-ric 99.9 2E-24 4.3E-29 187.6 6.2 91 2-97 31-121 (127)
26 smart00063 FRI Frizzled. Droso 99.9 2.8E-24 6E-29 184.5 6.7 91 2-95 23-113 (113)
27 cd07447 CRD_Carboxypeptidase_Z 99.9 2.9E-24 6.2E-29 187.1 5.6 94 2-98 26-124 (128)
28 cd07452 CRD_sizzled Cysteine-r 99.9 1.3E-23 2.9E-28 185.0 8.1 92 2-98 33-124 (141)
29 cd07451 CRD_SMO Cysteine-rich 99.9 2.8E-23 6.1E-28 181.2 5.1 103 2-118 29-132 (132)
30 cd07455 CRD_Collagen_XVIII Cys 99.8 1.1E-21 2.3E-26 169.3 5.3 89 2-95 29-117 (123)
31 cd07066 CRD_FZ CRD_domain cyst 99.8 5.2E-19 1.1E-23 153.7 7.1 94 3-96 25-118 (119)
32 KOG4193|consensus 99.7 3.4E-16 7.3E-21 169.1 25.1 255 146-455 320-581 (610)
33 PF01392 Fz: Fz domain; Inter 99.7 2.9E-17 6.2E-22 141.6 3.6 92 2-93 23-116 (116)
34 PF00002 7tm_2: 7 transmembran 99.6 5.4E-17 1.2E-21 157.6 1.9 180 147-346 2-182 (242)
35 PF11710 Git3: G protein-coupl 99.2 2.4E-10 5.2E-15 108.3 13.4 181 149-349 4-199 (201)
36 KOG4564|consensus 99.2 1.7E-09 3.8E-14 113.1 20.2 179 153-343 152-336 (473)
37 KOG4289|consensus 98.9 1.2E-08 2.6E-13 114.3 14.2 157 147-339 2164-2321(2531)
38 PF02101 Ocular_alb: Ocular al 98.7 4.4E-07 9.5E-12 91.7 17.1 184 148-344 29-223 (405)
39 PHA03087 G protein-coupled che 98.3 0.00012 2.5E-09 74.5 21.0 163 132-313 28-193 (335)
40 PHA02834 chemokine receptor-li 98.0 0.0024 5.2E-08 64.9 23.6 158 133-309 17-175 (323)
41 PHA03234 DNA packaging protein 98.0 0.0018 3.9E-08 66.4 22.5 162 132-311 20-184 (338)
42 PHA03235 DNA packaging protein 97.8 0.015 3.2E-07 61.3 25.9 135 144-295 31-168 (409)
43 PF00001 7tm_1: 7 transmembran 97.8 0.0012 2.6E-08 62.4 16.1 139 162-315 1-143 (257)
44 cd07459 CRD_TK_ROR_like Cystei 97.5 0.00013 2.8E-09 64.9 4.6 66 21-87 48-122 (135)
45 PF02076 STE3: Pheromone A rec 97.0 0.25 5.3E-06 49.5 22.1 185 181-385 23-220 (283)
46 PHA02638 CC chemokine receptor 96.8 0.47 1E-05 50.1 24.1 145 129-297 87-234 (417)
47 cd07468 CRD_TK_ROR2 Cysteine-r 96.1 0.0049 1.1E-07 54.6 3.4 81 6-87 29-124 (140)
48 cd07467 CRD_TK_ROR1 Cysteine-r 96.0 0.0063 1.4E-07 54.1 3.7 90 5-94 28-133 (142)
49 cd07469 CRD_TK_ROR_related Cys 95.7 0.012 2.7E-07 52.5 4.1 83 5-87 30-131 (147)
50 PF10320 7TM_GPCR_Srsx: Serpen 94.7 0.37 7.9E-06 47.4 11.5 136 159-314 4-141 (257)
51 PF05296 TAS2R: Mammalian tast 92.9 11 0.00025 37.9 23.8 45 149-193 10-57 (303)
52 PF10321 7TM_GPCR_Srt: Serpent 92.9 7 0.00015 39.7 17.2 31 416-446 267-297 (313)
53 KOG4220|consensus 92.0 0.12 2.7E-06 53.5 3.1 164 144-326 29-209 (503)
54 PF06454 DUF1084: Protein of u 89.9 23 0.00049 35.5 19.2 61 319-379 166-226 (281)
55 KOG4219|consensus 88.2 11 0.00025 39.3 13.6 140 141-300 31-175 (423)
56 KOG2087|consensus 87.9 1.4 3E-05 45.1 6.7 192 147-351 26-222 (363)
57 PF10323 7TM_GPCR_Srv: Serpent 83.9 12 0.00027 37.2 11.3 67 240-306 82-151 (283)
58 PF11188 DUF2975: Protein of u 68.7 52 0.0011 28.3 9.7 57 319-375 21-77 (136)
59 PF02118 Srg: Srg family chemo 65.7 1.3E+02 0.0029 29.0 18.2 67 229-295 77-144 (275)
60 PF02117 7TM_GPCR_Sra: Serpent 64.3 1.7E+02 0.0037 29.8 19.5 148 146-315 21-182 (328)
61 PF11970 Git3_C: G protein-cou 60.8 46 0.00099 26.5 6.9 67 356-444 5-72 (76)
62 PF12929 Mid1: Stretch-activat 59.8 5.4 0.00012 42.2 1.9 44 24-67 302-392 (427)
63 PRK11281 hypothetical protein; 52.9 4.1E+02 0.009 32.0 15.9 28 263-290 608-636 (1113)
64 PRK10929 putative mechanosensi 45.5 6.2E+02 0.014 30.5 18.1 30 263-292 587-617 (1109)
65 PHA03029 hypothetical protein; 42.5 1.5E+02 0.0033 23.4 6.9 44 339-386 32-75 (92)
66 COG5000 NtrY Signal transducti 40.3 1.3E+02 0.0029 33.4 8.6 74 318-395 38-113 (712)
67 PF10192 GpcrRhopsn4: Rhodopsi 40.1 3.6E+02 0.0079 26.3 18.5 15 138-152 19-33 (257)
68 PF10361 DUF2434: Protein of u 39.5 1.6E+02 0.0035 29.5 8.4 82 171-267 108-196 (296)
69 PF10328 7TM_GPCR_Srx: Serpent 35.9 4.2E+02 0.0091 25.7 20.1 178 155-348 3-191 (274)
70 PF12794 MscS_TM: Mechanosensi 35.9 5E+02 0.011 26.6 16.3 52 243-294 88-145 (340)
71 PF10317 7TM_GPCR_Srd: Serpent 34.1 4.7E+02 0.01 25.8 20.9 34 229-263 78-112 (292)
72 PRK14485 putative bifunctional 33.9 7.7E+02 0.017 28.2 14.4 53 245-298 61-116 (712)
73 PF10292 7TM_GPCR_Srab: Serpen 30.7 5.7E+02 0.012 25.7 25.9 97 230-331 93-194 (324)
74 PF02076 STE3: Pheromone A rec 29.5 4.7E+02 0.01 26.2 10.1 79 369-460 109-188 (283)
75 PF11694 DUF3290: Protein of u 26.7 2.8E+02 0.006 25.0 7.2 50 145-194 12-61 (149)
76 TIGR00659 conserved hypothetic 21.5 4.7E+02 0.01 25.4 8.0 82 247-350 3-85 (226)
No 1
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=100.00 E-value=8.1e-83 Score=639.85 Aligned_cols=319 Identities=41% Similarity=0.821 Sum_probs=301.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCC
Q psy8180 139 LYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPD 218 (471)
Q Consensus 139 ~ft~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~ 218 (471)
+||++|+++++.|+.++|++|+++|+|+++||++|++|++||||||+|+++||+++|++|+++++.|+|+++|+++++++
T Consensus 2 ~ft~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~ 81 (328)
T PF01534_consen 2 FFTQEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTE 81 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999855665
Q ss_pred CCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy8180 219 AVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHH 298 (471)
Q Consensus 219 r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~ 298 (471)
+ ...++|.++..|+++|+++|||+|||.+||++++++||+++++||++|++++++.|||++||++|+++|+++|++++
T Consensus 82 ~--~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~ 159 (328)
T PF01534_consen 82 R--ILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRK 159 (328)
T ss_pred e--eEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhcc
Confidence 6 67888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEEeeeCCc---eeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHH
Q psy8180 299 VSGDELTGLCYISEPAI---LVYLIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMP 375 (471)
Q Consensus 299 v~~~~~~g~CwI~~~~~---~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~ 375 (471)
||||+++|+|+||++|. .+|+++|+.++|++|++|++.|+++++|+|+.+|+++++++|++|+|.|||+|+++|++|
T Consensus 160 VdgD~ltGiC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~klm~RiGiFsvly~vp 239 (328)
T PF01534_consen 160 VDGDELTGICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLEKLMIRIGIFSVLYLVP 239 (328)
T ss_pred cccccccceeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 799999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHhcc--CCCCCCCCC---CCCCCchHHHHHHHHHHHhhhhhhheeeecchHHHHHHH
Q psy8180 376 AVGMLACLLYEWWQRPQEHALQALQAI--DCTAPSCQI---DPPRVSQITITLLRLFLFLVVGISSGMWVWSSKTCRSWT 450 (471)
Q Consensus 376 ~~~~~~~~~Ye~~~~~~w~~~~~~~~~--~~~~C~~~~---~~~~~P~~~~~~l~~~~~l~~GI~~~~w~~s~kt~~~W~ 450 (471)
++++++||+||+.|+++|++++.++.| ...+|+.+. .++++|++.+|++|++|++++||++++|+||+||+++||
T Consensus 240 ~~~~i~c~~YE~~~~~~W~~~~~~~~c~~~~~p~~~~~~~~~~~~~P~~~vf~Lk~~m~LivGItsg~WIwS~KTl~sWr 319 (328)
T PF01534_consen 240 ALIVIACHFYEYSNRPQWEESWRDYNCCRLNVPCPSDSCSCCPPSRPSFAVFMLKYFMSLIVGITSGFWIWSSKTLESWR 319 (328)
T ss_pred HHHHHHHHHHHHHhhHHHhhhcccCcCCccCCCCCCCCCcccccCCcchHHHHHHHHHHHhhchheeeeeechHHHHHHH
Confidence 999999999999999999999988763 233443321 236799999999999999999999999999999999999
Q ss_pred HhHhccCCC
Q psy8180 451 KLFVSPGCS 459 (471)
Q Consensus 451 ~~~~~~~~~ 459 (471)
|+++|++++
T Consensus 320 r~~~R~~~~ 328 (328)
T PF01534_consen 320 RFFRRLCGK 328 (328)
T ss_pred HHHHHHhCc
Confidence 999998764
No 2
>KOG3577|consensus
Probab=100.00 E-value=3.7e-84 Score=691.46 Aligned_cols=454 Identities=34% Similarity=0.705 Sum_probs=408.5
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
+-|.||+|+..++++|.||++.+||+++++||||+|+|+|+++.++|++|||++||++|++|+++|+.+|+.||+.|+||
T Consensus 65 l~H~tQ~ea~~~~~~f~PLv~~~Cs~~l~~FLCS~y~P~C~~~~d~pi~PCRslCe~ar~~Ce~~m~~~gf~WPe~L~C~ 144 (556)
T KOG3577|consen 65 VGHETQEEAGLKLHQFHPLVALRCSPGLRFFLCSLYAPMCTEDLDRPILPCRSLCEAAREGCEPLMEMFGFPWPEFLRCD 144 (556)
T ss_pred ccchhHHHhhhcccccCCccccccchhhhhHhhcCCCCcCccccCcccCccHHHHHHHhcccHHHHHhcCCCCCccccCC
Confidence 46899999999999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred CCCCCC-CCCcccCCCCCCCCc----ccC---CC-----C-----CCCC-CCCCcCccccCCCCCCCCcCCCCCCCCCCh
Q psy8180 82 RFPVSE-NNGLCMQNPINERKE----KYT---AP-----P-----KPKP-LTCPRNFIATQYLQEPQCTPRCDEDALYRS 142 (471)
Q Consensus 82 ~fP~~~-~~~~C~~~~~~~~~~----~~~---~~-----~-----~~~~-~~Cp~plv~~~~~~~~~C~~pC~~p~~ft~ 142 (471)
+||..+ .++.|++++.+.... +.. |. . .... ..||..++..+..+.++|++||+++ +|++
T Consensus 145 ~fp~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~C~~~-~f~~ 223 (556)
T KOG3577|consen 145 KFPVPDSAGELCMGPPSEGFAISAGSAGVSVLPDFGGPGVVLAKPWSDELCQNPSNFVGKESSEISNCAPPCPNP-LFSR 223 (556)
T ss_pred CCCCCCCccccccCCccccccCCCCCCCCCCCCCCCCCccccCCCCccccccCccccccccccCcccCCCCCCCc-ccch
Confidence 999876 568999987664211 100 00 0 0001 2245444444433678999999998 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCce
Q psy8180 143 EDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPY 222 (471)
Q Consensus 143 ~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~ 222 (471)
+|+++++.|++.+|.+|+..|+|+++||++|++|||||||+|+|++.||++.+++|++++..|+++++|+.. ..+ .
T Consensus 224 ~e~~~~~~~i~~~s~~c~~~tlft~ltf~~d~~rfryper~i~~l~~c~~~~s~~~~~~~~~g~~~~~c~~~--~~~--~ 299 (556)
T KOG3577|consen 224 DENRFARSWIGIWSALCFLSTLFTVLTFLIDRMRFRYPERPIFFLSACYLIVSVGYLSSFVLGSDEIACRAT--PAR--L 299 (556)
T ss_pred hhhhhHHHHhhhhhhccchhhHhHHHhhccchhhccCCCcchhhHHHhhhhhccceeecccCCCceeccCCC--CCC--c
Confidence 999999999999999999999999999999999999999999999999999999999999999899999962 223 6
Q ss_pred eeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCC
Q psy8180 223 IAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGD 302 (471)
Q Consensus 223 ~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~ 302 (471)
.+.+|.++..|+++|.+.|||+||+..||++++++|++++++||++|+++++..|||+++|.+|++.|+++|+++++|||
T Consensus 300 ~~~~~~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~~kw~~e~~e~~~~~fh~~aw~~p~~~ti~~l~~~~v~~~ 379 (556)
T KOG3577|consen 300 LVQTGLENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAGLKWGEEAIEAKSSYFHLLAWGLPSVQTILILALNKVDGD 379 (556)
T ss_pred eeecCCCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccceeeehhcCCchHHHHHHHHHHHhccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeeeCCc---eeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 303 ELTGLCYISEPAI---LVYLIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMPAVGM 379 (471)
Q Consensus 303 ~~~g~CwI~~~~~---~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~~~~~ 379 (471)
+.+|+|+||+.|. .+|++.|+.+++++|..|++.|+..++++|+.+|+++++++|++++|.|||+|++||.+|..++
T Consensus 380 ~~~giC~vG~~~~~~~~~fvl~pl~~~l~ig~~~l~~G~~~l~~~r~~~k~~~~~~~kl~~~m~~iGifs~Ly~~p~~~~ 459 (556)
T KOG3577|consen 380 ELSGICFVGNSNPDALRGFVLAPLFLYLIIGTLFLLAGFVSLFRIRSSIKLSGTCTDKLEKLMVRIGIFSALYTVPALIV 459 (556)
T ss_pred ceeEEEecCCCCcchhceeeecchhhhhhHHHHHHHHHHHHHhcccccccCCccchHHHHHHHHhcCcceEEEeecceEE
Confidence 9999999999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHhcc--CCCCCCCC--CCCCCCchHHHHHHHHHHHhhhhhhheeeecchHHHHHHHHhHhc
Q psy8180 380 LACLLYEWWQRPQEHALQALQAI--DCTAPSCQ--IDPPRVSQITITLLRLFLFLVVGISSGMWVWSSKTCRSWTKLFVS 455 (471)
Q Consensus 380 ~~~~~Ye~~~~~~w~~~~~~~~~--~~~~C~~~--~~~~~~P~~~~~~l~~~~~l~~GI~~~~w~~s~kt~~~W~~~~~~ 455 (471)
++|++||+.|+|.|+.++++.++ ...+|... .....+|++.++++|++|.+++||++++|+||+||+.+|+++++|
T Consensus 460 ~~c~~ye~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~m~k~l~~~~vgi~~~~wv~s~kt~~~w~~~~~~ 539 (556)
T KOG3577|consen 460 IACYFYEQANADSWEGSWEQDCCKIVSFPCPGTACCVGKNRPEFGVFMLKYLNSLIVGITSGFWVWSSKTLDSWQRFIRR 539 (556)
T ss_pred EeeEeehhhcccchhhhhhhccceeeccCCcchhccccccCchHHHHHHHHHhhcccCcCcceEEecCCCcccchhhhcc
Confidence 99999999999999999988664 22344332 124678999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy8180 456 PGCSL 460 (471)
Q Consensus 456 ~~~~~ 460 (471)
...++
T Consensus 540 ~~~~~ 544 (556)
T KOG3577|consen 540 GLVSE 544 (556)
T ss_pred ccccc
Confidence 87554
No 3
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=99.93 E-value=7.1e-27 Score=203.33 Aligned_cols=97 Identities=31% Similarity=0.748 Sum_probs=91.1
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..++++|.+|++.+||+++++||||+|+|+|++ .+++++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 27 lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSl~~P~C~~-~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~C~ 105 (127)
T cd07465 27 LGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTV-LEQALPPCRSLCERARQGCEALMNKFGFQWPDTLRCE 105 (127)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCChhhHhHhhhccCCcccC-CCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 579999999999999999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCC
Q psy8180 82 RFPVSENNGLCMQNPINE 99 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~~ 99 (471)
+||+.+++.+|++++.++
T Consensus 106 ~fP~~~~~~~C~~~~~~~ 123 (127)
T cd07465 106 KFPVHGAGELCVGQNTSE 123 (127)
T ss_pred cCCCCCCCCcccCCCCCC
Confidence 999987778999887654
No 4
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.93 E-value=1.9e-24 Score=215.96 Aligned_cols=254 Identities=15% Similarity=0.270 Sum_probs=192.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCC
Q psy8180 141 RSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAV 220 (471)
Q Consensus 141 t~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~ 220 (471)
+++|.+.++....+.|++|+++++|.++||+..++..+++.|.++|++++.++.+++.++....+ +.+
T Consensus 2 ~~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~---------~~~--- 69 (303)
T PF05462_consen 2 VKQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSP---------SAG--- 69 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCC---
Confidence 57899999999999999999999999999987666556678889999999999888776643221 111
Q ss_pred ceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccC
Q psy8180 221 PYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVS 300 (471)
Q Consensus 221 ~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~ 300 (471)
.++..|.++++++|||.+|+.+|.+++|++.|+...++. +..+|.+++||+++||+|++.++++++.+.+
T Consensus 70 -------~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~--~~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~- 139 (303)
T PF05462_consen 70 -------ENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRY--DELEKLEKYYHLVCWGIPLIPAVIPLIGNDY- 139 (303)
T ss_pred -------CCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence 346789999999999999999999999999999887643 2357888999999999999999999977654
Q ss_pred CCceeeEEEeeeCCc---eeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy8180 301 GDELTGLCYISEPAI---LVYLIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMPAV 377 (471)
Q Consensus 301 ~~~~~g~CwI~~~~~---~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~~~ 377 (471)
++.++||||++++. .+.|++|+++++++..++..+.....|+..+..-. .+++|-.+...|+..|-+.+++.++
T Consensus 140 -g~~G~WCWI~~~~~~~r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~~s--d~~~~~~~~~~kL~~Yp~ifiicw~ 216 (303)
T PF05462_consen 140 -GPAGNWCWIKPEWDVWRFALFYIPLWIIIIISAILVGITMRYIYRVIRNGVS--DNKDKHLKYQLKLVNYPLIFIICWI 216 (303)
T ss_pred -CCCCCceeecCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556999998876 57899999998888877666555555554332111 1223333455677777777777777
Q ss_pred HHHHHHHHHHhcchhhHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhh-heeeecchHH
Q psy8180 378 GMLACLLYEWWQRPQEHALQALQAIDCTAPSCQIDPPRVSQITITLLRLFLFLVVGIS-SGMWVWSSKT 445 (471)
Q Consensus 378 ~~~~~~~Ye~~~~~~w~~~~~~~~~~~~~C~~~~~~~~~P~~~~~~l~~~~~l~~GI~-~~~w~~s~kt 445 (471)
..+.-.+|+..+ ..| +.+.+|+....-.-|.. +..|+.|++-
T Consensus 217 fa~INRI~~~~~-------------------------~~~-~~l~~Lh~~~s~lqGf~nsivy~~n~~~ 259 (303)
T PF05462_consen 217 FATINRIYNFIG-------------------------KNP-FWLSVLHVGFSPLQGFFNSIVYGYNNSL 259 (303)
T ss_pred HHHHHHHHHHhc-------------------------CCc-hHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 766666666542 134 45677877777778888 5689988875
No 5
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.93 E-value=1.3e-26 Score=201.21 Aligned_cols=96 Identities=30% Similarity=0.732 Sum_probs=90.3
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|++.++++|.+|++.+||+++++||||+|+|+|++ .+.+++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 27 lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~-~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~C~ 105 (125)
T cd07466 27 LGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSMYAPVCTV-LEQAIPPCRSLCERARQGCEALMNKFGFQWPERLRCE 105 (125)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCCccCC-CCCcCCCcHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 579999999999999999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCC
Q psy8180 82 RFPVSENNGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~ 98 (471)
+||+.+++.+|++++..
T Consensus 106 ~fP~~~~~~~Ci~~~~~ 122 (125)
T cd07466 106 NFPVHGAGEICVGQNTS 122 (125)
T ss_pred cCCCCCCCCcCcCCCCC
Confidence 99998777889987654
No 6
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=99.93 E-value=1.4e-26 Score=201.23 Aligned_cols=97 Identities=33% Similarity=0.738 Sum_probs=90.6
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|++.++++|.+|++.+||+++++||||+|+|+|+++.+++++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 27 lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~C~ 106 (127)
T cd07460 27 FNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMNCD 106 (127)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCccccCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCChh
Confidence 47999999999999999999999999999999999999998766789999999999999999999999999999999999
Q ss_pred CCCCCCC-CCcccCCCCC
Q psy8180 82 RFPVSEN-NGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~-~~~C~~~~~~ 98 (471)
+||+.++ +.+|++++.+
T Consensus 107 ~fP~~~~~~~~C~~~~~~ 124 (127)
T cd07460 107 RLPVLGDPETLCMDYNRT 124 (127)
T ss_pred hCCCCCCCCCccCCCCCC
Confidence 9998774 6789987754
No 7
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=99.93 E-value=1.8e-26 Score=200.59 Aligned_cols=97 Identities=37% Similarity=0.854 Sum_probs=90.5
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..++++|.+|++.+||+++++||||+|+|+|+++.+.+++|||++||+||++|+++|+++|++||+.|+|+
T Consensus 27 lgH~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 106 (127)
T cd07462 27 MGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACRVMCEQARLKCSPIMEQFNFKWPDSLDCS 106 (127)
T ss_pred cCCcCHHHHHHHHHHHHHHhccCCChhhHHHHHhccccccCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 46899999999999999999999999999999999999998866789999999999999999999999999999999999
Q ss_pred CCCCCCC-CCcccCCCCC
Q psy8180 82 RFPVSEN-NGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~-~~~C~~~~~~ 98 (471)
+||+.++ +.+|++++..
T Consensus 107 ~fP~~~~~~~lc~~~~~~ 124 (127)
T cd07462 107 KLPNKNDPNYLCMEAPNN 124 (127)
T ss_pred cCCCCCCCCcccCCCCCC
Confidence 9998774 5689988654
No 8
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=99.93 E-value=1.4e-26 Score=200.63 Aligned_cols=97 Identities=28% Similarity=0.664 Sum_probs=89.7
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccc-cCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEH-VIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNC 80 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~-~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C 80 (471)
..|.||+|+..++++|.+|++.+||+++++||||+|+|+|+++ .+++++|||++||++|++|+++|+.||++||+.|+|
T Consensus 26 lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~L~C 105 (126)
T cd07441 26 LHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARAGCEPVLIRYRHTWPESLAC 105 (126)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCccchhHHhhccCcccCCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCCc
Confidence 4799999999999999999999999999999999999999875 468999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCC
Q psy8180 81 SRFPVSENNGLCMQNPINE 99 (471)
Q Consensus 81 ~~fP~~~~~~~C~~~~~~~ 99 (471)
++||+.+ +++|++|.+..
T Consensus 106 ~~fP~~~-~~~Ci~p~~~~ 123 (126)
T cd07441 106 EELPVYD-RGVCISPEAIV 123 (126)
T ss_pred ccCCCCC-CCcCcChhhhc
Confidence 9999864 45899987653
No 9
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=99.93 E-value=2e-26 Score=200.28 Aligned_cols=97 Identities=30% Similarity=0.712 Sum_probs=90.9
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..++++|.+|++.+||+++++||||+|+|+|++ .+.+++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 27 lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~-~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~C~ 105 (127)
T cd07464 27 LGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSMYAPVCTV-LEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCE 105 (127)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHhhccCCccCC-CCCcCCCcHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 579999999999999999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCC
Q psy8180 82 RFPVSENNGLCMQNPINE 99 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~~ 99 (471)
+||+.+++.+|++++..+
T Consensus 106 ~fP~~~~~~~C~~~~~~~ 123 (127)
T cd07464 106 NFPRHGAEQICVGQNHSE 123 (127)
T ss_pred cCCCCCCCCcCCCCCCCC
Confidence 999987678899877654
No 10
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.93 E-value=1.5e-26 Score=200.59 Aligned_cols=96 Identities=27% Similarity=0.683 Sum_probs=89.1
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccc-cCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEH-VIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNC 80 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~-~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C 80 (471)
..|.+|+|+..++++|.+|++++||+++++||||+|+|+|+++ .+.+++|||++||++|++|+++|+.||++||+.|||
T Consensus 27 lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~L~C 106 (127)
T cd07442 27 LHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCRSVCQRARDGCEPIMRRYNHSWPESLAC 106 (127)
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCcchHHHHHhhcCCccCCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCCc
Confidence 4799999999999999999999999999999999999999874 568999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCC
Q psy8180 81 SRFPVSENNGLCMQNPIN 98 (471)
Q Consensus 81 ~~fP~~~~~~~C~~~~~~ 98 (471)
++||..+ +++|++|.+.
T Consensus 107 ~~fP~~~-~~~Ci~p~~~ 123 (127)
T cd07442 107 DDLPVYD-RGVCISPEAI 123 (127)
T ss_pred ccCCCCC-CCcccCHHHh
Confidence 9999864 4589988754
No 11
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=99.93 E-value=2.5e-26 Score=199.91 Aligned_cols=97 Identities=38% Similarity=0.878 Sum_probs=90.5
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++++||+++++||||+|+|+|+++.+.+++|||++||++|++|+++|+++|++||+.|+|+
T Consensus 27 lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~C~ 106 (127)
T cd07463 27 LGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACRPMCEQARQKCSPIMEQFNFGWPESLDCS 106 (127)
T ss_pred cCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCChh
Confidence 46999999999999999999999999999999999999999866789999999999999999999999999999999999
Q ss_pred CCCCCC-CCCcccCCCCC
Q psy8180 82 RFPVSE-NNGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~-~~~~C~~~~~~ 98 (471)
+||+.+ ++.+|++++..
T Consensus 107 ~fP~~~~~~~~C~~~~~~ 124 (127)
T cd07463 107 RLPTRNDPNALCMEAPEN 124 (127)
T ss_pred hCCCCCCCCcccCCCCcc
Confidence 999876 46789988653
No 12
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.93 E-value=2.5e-26 Score=199.52 Aligned_cols=96 Identities=31% Similarity=0.713 Sum_probs=89.7
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++.+||+++++||||+|+|+|+++.+++++|||++||++|++|+++|+.+|++||+.++|+
T Consensus 27 l~H~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 106 (125)
T cd07461 27 FNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFPWPDRMRCD 106 (125)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCcccCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCChh
Confidence 46899999999999999999999999999999999999999866799999999999999999999999999999999999
Q ss_pred CCCCCCC-CCcccCCCC
Q psy8180 82 RFPVSEN-NGLCMQNPI 97 (471)
Q Consensus 82 ~fP~~~~-~~~C~~~~~ 97 (471)
+||+.++ +.+|++++.
T Consensus 107 ~fP~~~~~~~~C~~~~~ 123 (125)
T cd07461 107 LLPEQGNPDTLCMDYNR 123 (125)
T ss_pred hCCCCCCCCCccCCCCC
Confidence 9998763 678998764
No 13
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.93 E-value=3.9e-26 Score=196.83 Aligned_cols=94 Identities=32% Similarity=0.774 Sum_probs=88.5
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..++++|.+|++.+||+++++||||+|+|+|++ .+++++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 25 lgh~~q~ea~~~l~~~~pLv~~~C~p~l~~FlCsl~~P~C~~-~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 103 (119)
T cd07458 25 LGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYAPVCTV-LERPIPPCRSLCESARQGCEALMNKFGFQWPESLDCE 103 (119)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccccccCC-CCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 579999999999999999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCC
Q psy8180 82 RFPVSENNGLCMQNP 96 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~ 96 (471)
+||+.+++.+|++++
T Consensus 104 ~fP~~~~~~~C~~~~ 118 (119)
T cd07458 104 KFPVHGAGDLCVGEN 118 (119)
T ss_pred cCCCCCCCCcCCCCC
Confidence 999887677898764
No 14
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=99.92 E-value=5e-26 Score=198.30 Aligned_cols=97 Identities=41% Similarity=0.867 Sum_probs=90.3
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..+++.|.+|++.+||+++++||||+|+|+|+++.+.+++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 26 lgh~sq~ea~~~l~~~~pLv~~~Csp~l~~flCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 105 (126)
T cd07448 26 VGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCRPLCLSVKKRCLPVLKEFGFPWPEALNCS 105 (126)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCCChhHHhHhhhccccccCCCCCCcCCcCHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 47899999999999999999999999999999999999998866789999999999999999999999999999999999
Q ss_pred CCCCCC-CCCcccCCCCC
Q psy8180 82 RFPVSE-NNGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~-~~~~C~~~~~~ 98 (471)
+||+.+ ++.+|++++..
T Consensus 106 ~fP~~~~~~~~C~~~~~~ 123 (126)
T cd07448 106 KFPPQNNHNHMCMEGPGD 123 (126)
T ss_pred cCCCCCCCCCccCCCCCc
Confidence 999877 35689987654
No 15
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.92 E-value=5.3e-26 Score=196.74 Aligned_cols=95 Identities=35% Similarity=0.863 Sum_probs=88.8
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..++++|.+|++.+||+++++||||+|+|+|+++.+.+++|||++||++|++|+++|+.+|++||+.++|+
T Consensus 25 lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 104 (121)
T cd07457 25 LGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACRSMCEQARDKCSPIMEQFSFSWPDSLDCD 104 (121)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcCCChhHHHHhhhccCcccCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 47899999999999999999999999999999999999999866789999999999999999999999999999999999
Q ss_pred CCCCCC-CCCcccCCC
Q psy8180 82 RFPVSE-NNGLCMQNP 96 (471)
Q Consensus 82 ~fP~~~-~~~~C~~~~ 96 (471)
+||+.+ .+.+|++++
T Consensus 105 ~fP~~~~~~~~c~~~~ 120 (121)
T cd07457 105 RLPRKNDPKDLCMEAP 120 (121)
T ss_pred cCCCCCCCCCCcCCCC
Confidence 999876 367899765
No 16
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=99.92 E-value=5.5e-26 Score=197.15 Aligned_cols=95 Identities=34% Similarity=0.736 Sum_probs=88.8
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..+++.|.+|++++||+++++||||+|+|+|+++.+++++|||++||+||++|+++|+.+|++||+.|+|+
T Consensus 27 lgh~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~C~ 106 (124)
T cd07454 27 ILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCKSVCEQVKADCFSILEEFGIGWPEPLNCA 106 (124)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCChhHHHHhhcccccccCCCCCCcCCCChhHHHHHHHHHHHHHHHhCCCCCCCCChh
Confidence 46899999999999999999999999999999999999999866789999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCC
Q psy8180 82 RFPVSENNGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~ 98 (471)
+||+. +++|++|..+
T Consensus 107 ~fP~~--~~~C~~p~~~ 121 (124)
T cd07454 107 QFPDP--PELCMKPTED 121 (124)
T ss_pred hCCCC--CCCCCCcchh
Confidence 99985 4589998754
No 17
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=99.92 E-value=5.8e-26 Score=196.61 Aligned_cols=96 Identities=24% Similarity=0.544 Sum_probs=88.2
Q ss_pred CccchHHHHHH--HhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCC
Q psy8180 2 TKWSMGFNRMY--RLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFN 79 (471)
Q Consensus 2 ~~~~tQ~~~~~--~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~ 79 (471)
..|.+|+|+.. +++.|.+|++.+||+++++||||+|+|+|+++.+.+++|||++||+||++|+++|+.+|++||+.|+
T Consensus 24 lgH~sq~ea~~~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~l~ 103 (122)
T cd07888 24 LGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCRSLCRNSKERCESVLGIVGLQWPEDTD 103 (122)
T ss_pred cCCCCHHHHHHhhhHHHHHhHHhcCCChhHHHHHHhccCccccCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 57999999976 4679999999999999999999999999987667899999999999999999999999999999999
Q ss_pred CCCCCCCC-CCCcccCCCC
Q psy8180 80 CSRFPVSE-NNGLCMQNPI 97 (471)
Q Consensus 80 C~~fP~~~-~~~~C~~~~~ 97 (471)
|++||+.+ ++.+|+.|++
T Consensus 104 C~~fP~~~~~~~~C~~p~~ 122 (122)
T cd07888 104 CAQFPEENSDNQTCLLPDE 122 (122)
T ss_pred cccCCCCCCCCCcCCCCCC
Confidence 99999876 4678998763
No 18
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.92 E-value=7.6e-26 Score=195.49 Aligned_cols=95 Identities=28% Similarity=0.737 Sum_probs=89.1
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++++||+++++||||+|+|+|+++.+++++|||++||++|++|+++|+.+|++||+.++|+
T Consensus 24 lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 103 (120)
T cd07456 24 FNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCRSVCERARDGCAPIMRQYGFAWPERMSCD 103 (120)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCChhHHHHhHhccCcccCCCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCCcCChh
Confidence 46899999999999999999999999999999999999999866789999999999999999999999999999999999
Q ss_pred CCCCCCC-CCcccCCC
Q psy8180 82 RFPVSEN-NGLCMQNP 96 (471)
Q Consensus 82 ~fP~~~~-~~~C~~~~ 96 (471)
+||+.++ +.+|++++
T Consensus 104 ~fP~~~~~~~~C~~~~ 119 (120)
T cd07456 104 ALPEGGDPDNLCMDRN 119 (120)
T ss_pred hCCCCCCCCCccCCCC
Confidence 9998764 67899764
No 19
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=99.92 E-value=8.2e-26 Score=195.83 Aligned_cols=96 Identities=26% Similarity=0.555 Sum_probs=88.2
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|++.++++|.+|++.+||+++++||||+|+|+|++ .+.+++|||++||+||++|+++|+.+|++||+.|+|+
T Consensus 27 lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSly~P~C~~-~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~L~C~ 105 (127)
T cd07449 27 LNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCME-YGRVTLPCRRLCQRAYSECSKLMEMFGVPWPEDMECS 105 (127)
T ss_pred cCCcCHHHHHHHHHhhcccccCCcChhhHhHhheeeccccCC-CCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 578999999999999999999999999999999999999986 4678999999999999999999999999999999999
Q ss_pred CCCCCCC-CCcccCCCCC
Q psy8180 82 RFPVSEN-NGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~-~~~C~~~~~~ 98 (471)
+||+.++ +.+|+++..+
T Consensus 106 ~fP~~~~~~~~c~~~~~~ 123 (127)
T cd07449 106 RFPDCDEPYPRLVDLSLS 123 (127)
T ss_pred cCCCCCCCcccccccccC
Confidence 9998763 4579887543
No 20
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=99.92 E-value=1.8e-25 Score=194.79 Aligned_cols=95 Identities=33% Similarity=0.757 Sum_probs=89.0
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++++||+++++||||+|+|+|+++.+++++|||++||++|++|+++|+.+|++||+.+||+
T Consensus 29 lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 108 (128)
T cd07446 29 LGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPCRSLCEAVKDGCAPVMSAFGFPWPDMLDCT 108 (128)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccCccccCCCCCcCCccHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 47899999999999999999999999999999999999999867899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCC
Q psy8180 82 RFPVSENNGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~ 98 (471)
+||+. +++|+.+...
T Consensus 109 ~fP~~--~~~Ci~~~~~ 123 (128)
T cd07446 109 RFPLD--NDLCIPPAGS 123 (128)
T ss_pred cCCCC--CCcccCcccc
Confidence 99984 4589987654
No 21
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=99.91 E-value=1.6e-24 Score=189.64 Aligned_cols=93 Identities=29% Similarity=0.741 Sum_probs=86.8
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++++||+++++||||+|+|+|+ +.+++|||++||+||++|+++|+.+|++||+.|+|+
T Consensus 27 lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FLCSl~~P~C~---~~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 103 (135)
T cd07453 27 LEHETMAEVIQQSSSWLPLLARECHPDARIFLCSLFAPICW---DRPIYPCRSLCEAVRSSCAPLMACYGYPWPEILHCD 103 (135)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhhcCccCC---CCCCCccHHHHHHHHHHHHHHHHHhCCCCCCCCChh
Confidence 47999999999999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCC
Q psy8180 82 RFPVSENNGLCMQNPINE 99 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~~ 99 (471)
+||+. +++|+++...+
T Consensus 104 ~fP~~--~~~Ci~p~~~~ 119 (135)
T cd07453 104 KFPVD--HDLCISPQFID 119 (135)
T ss_pred hCCCC--CCcccCCCCCC
Confidence 99984 46899886543
No 22
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=99.90 E-value=1.3e-24 Score=188.22 Aligned_cols=93 Identities=27% Similarity=0.508 Sum_probs=82.2
Q ss_pred ccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccc--cCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCC
Q psy8180 3 KWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEH--VIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNC 80 (471)
Q Consensus 3 ~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~--~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C 80 (471)
.|.+ .|++.++++|.+|++.+||+++++||||+|+|+|+++ ...+++|||++||++|++|+++|+.||++||+.|+|
T Consensus 28 gh~~-~ea~~~l~~f~pLv~~~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PCRslCe~vr~~C~~~m~~fg~~WPe~L~C 106 (130)
T cd07445 28 SVKN-MEMEKFLKFFSYLHRLSCYQHIMLFGCSLALPECISDGDDRHGLLPCRSFCEAAKEGCEPVLGMVNASWPDFLRC 106 (130)
T ss_pred cccC-HHHHHHHHhhccccccCcChhhHHHhhhccCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCCc
Confidence 4544 5899999999999999999999999999999999874 346899999999999999999999999999999999
Q ss_pred CCCCCCCC-----CCcccCCC
Q psy8180 81 SRFPVSEN-----NGLCMQNP 96 (471)
Q Consensus 81 ~~fP~~~~-----~~~C~~~~ 96 (471)
|+||+.++ .+.|+.|.
T Consensus 107 ~~fP~~~~~~~~~~~~c~~~~ 127 (130)
T cd07445 107 SQFRNNTETAVENRALCFSPQ 127 (130)
T ss_pred cccCCCCCCcccccccccChh
Confidence 99998763 24676654
No 23
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=99.90 E-value=2.6e-24 Score=186.73 Aligned_cols=85 Identities=27% Similarity=0.613 Sum_probs=80.4
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..++++|.+|++.+||+++++||||+|+|+|++ ...+++|||++||+||++|+++|+.+|++||+.|+|+
T Consensus 27 lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~-~~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~L~C~ 105 (127)
T cd07450 27 MGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVPTCTE-QIHVVRPCRELCEKVYSDCKKLIDTFGISWPEELECD 105 (127)
T ss_pred cCCcCHHHHHHHHHHHHhHhccCCChhhhhheeeeecccccC-CCCcCCCCHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 579999999999999999999999999999999999999987 3468899999999999999999999999999999999
Q ss_pred CCCCCC
Q psy8180 82 RFPVSE 87 (471)
Q Consensus 82 ~fP~~~ 87 (471)
+||+.+
T Consensus 106 ~fP~~~ 111 (127)
T cd07450 106 RLQYCD 111 (127)
T ss_pred cCCCCC
Confidence 999754
No 24
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=99.90 E-value=2.3e-24 Score=186.52 Aligned_cols=90 Identities=29% Similarity=0.719 Sum_probs=84.2
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++.+||+++++||||+|+|+|++ ++++|||++||++|++|+++|+++|+.||+.|+|+
T Consensus 31 lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCsl~~P~C~~---~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~L~C~ 107 (124)
T cd07443 31 LDHETMAEVKQQASSWVPLLNKNCHKGTQVFLCSLFAPVCLD---RPVYPCRWLCEAVRDSCEPVMQFFGFYWPEMLKCD 107 (124)
T ss_pred cCCCCHHHHHHHHHHHHHHHhccccHHHHHHhhheeccCCCC---CCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 469999999999999999999999999999999999999974 78999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCC
Q psy8180 82 RFPVSENNGLCMQNPI 97 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~ 97 (471)
+||+. ++|+.++.
T Consensus 108 ~fP~~---~~ci~~~~ 120 (124)
T cd07443 108 KFPEG---EVCIAMTP 120 (124)
T ss_pred cCCCC---CCccCCCC
Confidence 99974 46998764
No 25
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.90 E-value=2e-24 Score=187.64 Aligned_cols=91 Identities=30% Similarity=0.750 Sum_probs=84.6
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++.+||+++++||||+|+|+|++ .+++|||++||++|++|+++|+.+|++||+.|+|+
T Consensus 31 lgH~~q~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~---~~i~PCRslCe~vr~~C~~~m~~~g~~WP~~l~C~ 107 (127)
T cd07444 31 LEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVCLD---RPIYPCRSLCEAVRDSCAPVMESYGFPWPEMLHCH 107 (127)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcccCHHHHHHhhhhcCCCCCC---CCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCChh
Confidence 468999999999999999999999999999999999999974 78999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCC
Q psy8180 82 RFPVSENNGLCMQNPI 97 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~ 97 (471)
+||+. +++|++...
T Consensus 108 ~fP~~--~~~C~~~~~ 121 (127)
T cd07444 108 KFPLD--NDLCIAVQF 121 (127)
T ss_pred hCCCC--CCccccccc
Confidence 99984 458987554
No 26
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=99.90 E-value=2.8e-24 Score=184.54 Aligned_cols=91 Identities=41% Similarity=0.883 Sum_probs=84.0
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.+|+|+..+++.|.+|++++||+++++||||+|+|+|++.. .+++|||++||++|++|+++|+.+|++||+.++|+
T Consensus 23 l~h~~q~ea~~~l~~~~~L~~~~C~p~l~~flCsl~~P~C~~~~-~~~~PCRs~Ce~vr~~C~~~~~~~g~~WP~~l~C~ 101 (113)
T smart00063 23 LGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAPICTEDL-RPILPCRSLCEAAREGCEPLMEKFGFPWPEFLRCD 101 (113)
T ss_pred cCCCCHHHHHHHHHHHHhhccCCCChhHHHHhHhccCcccCCCC-CcCCcCHHHHHHHHHHHHHHHHHhCCCCCCcCCcc
Confidence 47999999999999999999999999999999999999998743 37999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCC
Q psy8180 82 RFPVSENNGLCMQN 95 (471)
Q Consensus 82 ~fP~~~~~~~C~~~ 95 (471)
+||+.+ ++|+++
T Consensus 102 ~fP~~~--~~C~~~ 113 (113)
T smart00063 102 RFPVQE--ELCMDP 113 (113)
T ss_pred cCCCCC--CCCCCc
Confidence 999863 578764
No 27
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=99.90 E-value=2.9e-24 Score=187.07 Aligned_cols=94 Identities=26% Similarity=0.496 Sum_probs=84.2
Q ss_pred CccchHHHHHH--H---hhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCC
Q psy8180 2 TKWSMGFNRMY--R---LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPP 76 (471)
Q Consensus 2 ~~~~tQ~~~~~--~---l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~ 76 (471)
..|.||+++.. + ++.|.+|++.+||+++++||||+|+|+|++ +.+++|||++||+||++|+++|..+|++||+
T Consensus 26 lgH~sq~~~~~~~~~~~l~~f~pLv~~~C~p~l~~FLCSl~~P~C~~--~~~i~PCRslCe~vr~~C~~~m~~fg~~WP~ 103 (128)
T cd07447 26 LGHRSREVTEAGAEYLLLSVLHGLLGGECNPDIRLLGCSVLAPRCEN--DKVIKPCRSTCEALRKRCSHAFDAIQMAWPY 103 (128)
T ss_pred cCCCCHHHHHhhhhHhHHHHHhhhhhcCcChhHHhHhhcccccccCC--CCccCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 57899997654 3 789999999999999999999999999987 6899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCC
Q psy8180 77 LFNCSRFPVSENNGLCMQNPIN 98 (471)
Q Consensus 77 ~l~C~~fP~~~~~~~C~~~~~~ 98 (471)
.|+|++||+. .++.|++|.+.
T Consensus 104 ~L~C~~fP~~-~~~~c~~~~~~ 124 (128)
T cd07447 104 FLDCDRFFAG-EQEGCYDPLEG 124 (128)
T ss_pred cCccccCCCc-cCCCccChHHH
Confidence 9999999976 45569887643
No 28
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=99.89 E-value=1.3e-23 Score=185.00 Aligned_cols=92 Identities=27% Similarity=0.659 Sum_probs=85.8
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++.+||+++++||||+|+|+|++ .+++|||++||++|++|+++|+++|+.||+.|||+
T Consensus 33 lgH~sq~ea~~~~~~f~pLv~~~C~p~l~~FlCSl~~P~C~~---~~i~PCRslCe~vr~~C~~~m~~fg~~WP~~L~C~ 109 (141)
T cd07452 33 LGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSLFAPVCLD---TFIQPCRSMCVAVRDSCAPVLACHGHSWPESLDCD 109 (141)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhcccCCCC---CCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 468999999999999999999999999999999999999975 67999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCC
Q psy8180 82 RFPVSENNGLCMQNPIN 98 (471)
Q Consensus 82 ~fP~~~~~~~C~~~~~~ 98 (471)
+||+. +++|+++...
T Consensus 110 ~fP~~--~~~C~~~~~~ 124 (141)
T cd07452 110 RFPAG--EDMCLASLSK 124 (141)
T ss_pred cCCCC--CCccCCCCcc
Confidence 99984 3589998654
No 29
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=99.88 E-value=2.8e-23 Score=181.21 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=88.3
Q ss_pred CccchHHHHHHHhhhhhhcccc-CCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINS-NCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNC 80 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~-~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C 80 (471)
..|.||+|++.++++|.+|++. +||+++++||||+|+|+|++ +.+++|||++|+++|++|+++|+.+ .||++|+|
T Consensus 29 ~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~--~~~~~PCRslCe~vr~~C~~~m~~~--~WP~~L~C 104 (132)
T cd07451 29 PDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCEN--GKVELPSQEMCQATRGPCKIVENER--GWPDFLRC 104 (132)
T ss_pred cCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCC--CCccCCCHHHHHHHHHHHHHHHHcC--CCCCcCcC
Confidence 4689999999999999999999 99999999999999999987 6899999999999999999999876 79999999
Q ss_pred CCCCCCCCCCcccCCCCCCCCcccCCCCCCCCCCCCcC
Q psy8180 81 SRFPVSENNGLCMQNPINERKEKYTAPPKPKPLTCPRN 118 (471)
Q Consensus 81 ~~fP~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cp~p 118 (471)
|+||.. ...|.++.... ..+..++|.+|
T Consensus 105 ~~~p~~--~~~C~~~~~~~--------~~n~~~~c~~p 132 (132)
T cd07451 105 DNDRFP--PRGCKNDVREL--------KFNTSGQCESP 132 (132)
T ss_pred CCCCCc--cccCCCHHHHh--------hccCCCCccCc
Confidence 999874 35687654321 24455667654
No 30
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=99.84 E-value=1.1e-21 Score=169.28 Aligned_cols=89 Identities=25% Similarity=0.522 Sum_probs=80.7
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCS 81 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~ 81 (471)
..|.||+|+..++++|.+|++.+||+++++||||+|+|+|++....+++||||+||++|++|+++|+.+| || ++|+
T Consensus 29 lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCs~~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m~~fg--~p--l~C~ 104 (123)
T cd07455 29 LNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPCRQFCEVLQDSCWNLLEGGR--LP--VACA 104 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCChhhHHHhhhccCCcccCCCCCcCCccHHHHHHHHHHHHHHHHccC--CC--ChHH
Confidence 4689999999999999999999999999999999999999986667899999999999999999999876 55 8999
Q ss_pred CCCCCCCCCcccCC
Q psy8180 82 RFPVSENNGLCMQN 95 (471)
Q Consensus 82 ~fP~~~~~~~C~~~ 95 (471)
+||+.+ +++|+..
T Consensus 105 ~fP~~~-~~~C~~~ 117 (123)
T cd07455 105 SLPEQE-DGYCVLI 117 (123)
T ss_pred HCCCCC-CcccccC
Confidence 999864 5678754
No 31
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.77 E-value=5.2e-19 Score=153.74 Aligned_cols=94 Identities=39% Similarity=0.854 Sum_probs=86.4
Q ss_pred ccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCcccCCchhhHHHHhcCCHhhhhhccCCCCCCCCCCC
Q psy8180 3 KWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNCSR 82 (471)
Q Consensus 3 ~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C~~ 82 (471)
.|.+|+|+..++..+.+|+..+||++++.|+|++|+|+|++....+++|||++||++++.|+..+..+|..||..++|++
T Consensus 25 ~~~~~~~a~~~~~~~~~l~~~~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCRs~Ceev~~~C~~~~~~~~~~wp~~~~C~~ 104 (119)
T cd07066 25 GHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLCEEVRDSCEPLMLAFGFPWPEPLDCDR 104 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHhccCccccCCCCCcCCChHHHHHHHHHHHHHHHHHhCCCCCCcCCccc
Confidence 46789999999999999999999999999999999999998555799999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCC
Q psy8180 83 FPVSENNGLCMQNP 96 (471)
Q Consensus 83 fP~~~~~~~C~~~~ 96 (471)
||+.++++.|++++
T Consensus 105 ~p~~~~~~~C~~p~ 118 (119)
T cd07066 105 FPDSNEEGLCISPP 118 (119)
T ss_pred cCCCCCCCcCCCCC
Confidence 99875567788764
No 32
>KOG4193|consensus
Probab=99.74 E-value=3.4e-16 Score=169.11 Aligned_cols=255 Identities=14% Similarity=0.220 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceee
Q psy8180 146 NLVERWMRALSWLCFTSTLFTLLTFWVDGS-RFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIA 224 (471)
Q Consensus 146 ~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~-r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~ 224 (471)
........+.-++|+++.+.+++||++-++ +..+ .++.+-+++|.++.-+.+++... ..
T Consensus 320 ~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~-~~i~~~l~~~L~l~~l~fL~~~~----~~--------------- 379 (610)
T KOG4193|consen 320 LLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDR-TKIHINLCLCLFLAELLFLLGID----RT--------------- 379 (610)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcccc----cc---------------
Confidence 344555566777888888889999987765 3333 66777778887776666555321 00
Q ss_pred ecCCCCc-chHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCC-
Q psy8180 225 VDALQSP-TCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGD- 302 (471)
Q Consensus 225 ~~g~~~~-~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~- 302 (471)
..+. .|.+.++++|||.||++.||.++++..|+........ ..+++..+|.+++||.|++.+.+.++.+....+
T Consensus 380 ---~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~-~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~ 455 (610)
T KOG4193|consen 380 ---STSVVLCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRS-RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQ 455 (610)
T ss_pred ---cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHhhhhHHHHhheeEEeccCccc
Confidence 1122 8999999999999999999999999888754432222 223445556579999999999999988765421
Q ss_pred -ceeeEEEeeeCCc-eeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 303 -ELTGLCYISEPAI-LVYLIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMPAVGML 380 (471)
Q Consensus 303 -~~~g~CwI~~~~~-~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~~~~~~ 380 (471)
.--+.||+.+++. .+.|++|+.+++++++++++.++++|.+.++..++ ..+|++....-.+..++++++-.+=.|
T Consensus 456 ~~~~~~CWl~~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~L~~lLGlTW~f 532 (610)
T KOG4193|consen 456 YGTPRVCWLDTQNGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP---IASKLENISLIRSALALLFLLGLTWIF 532 (610)
T ss_pred cccCCceEEecCCceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCc---chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123599999999 88899999999999999999999988876666543 334555543233333333333333333
Q ss_pred HHHHHHHhcchhhHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhhe--eeecchHHHHHHHHhHhc
Q psy8180 381 ACLLYEWWQRPQEHALQALQAIDCTAPSCQIDPPRVSQITITLLRLFLFLVVGISSG--MWVWSSKTCRSWTKLFVS 455 (471)
Q Consensus 381 ~~~~Ye~~~~~~w~~~~~~~~~~~~~C~~~~~~~~~P~~~~~~l~~~~~l~~GI~~~--~w~~s~kt~~~W~~~~~~ 455 (471)
+...+... -+..+..++-+.--.-|+..+ ..+..+|-.+.|+++++.
T Consensus 533 gi~s~~~~----------------------------~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~ 581 (610)
T KOG4193|consen 533 GIFSWLPG----------------------------TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCC 581 (610)
T ss_pred HHHHHhcc----------------------------cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcc
Confidence 33333321 123333333333444565543 457789999999998873
No 33
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.67 E-value=2.9e-17 Score=141.57 Aligned_cols=92 Identities=36% Similarity=0.720 Sum_probs=78.2
Q ss_pred CccchHHHHHHHhhhhhhccccCCchhhhhhhccccccccccccCc-ccCCchhhHHHHhcCCHhhhhhccCCCCCCCCC
Q psy8180 2 TKWSMGFNRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIG-AIPSCRGLCEDVKADCLPTLTALNFILPPLFNC 80 (471)
Q Consensus 2 ~~~~tQ~~~~~~l~~~~~L~~~~C~~~l~~fLCs~~~P~C~~~~~~-~i~PCrslC~~~~~~C~~~l~~~~~~wP~~l~C 80 (471)
.+|.+|+++..+++.|..|++.+|+++++.|||++++|+|.+.... +++|||++|+++++.|...+..++..||+.++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr~~C~~v~~~C~~~~~~~~~~~~~~~~C 102 (116)
T PF01392_consen 23 LGHQTQDEASQQLNAFSTLVNSGCHPYLRPFLCSLYFPPCDEGGPTPPLPPCRSLCEEVKSSCSPELENLGLGWPSFLDC 102 (116)
T ss_dssp TTSSSHHHHHHHHHCCHHHHCCTSHTTHHHHHHHHHS-BBBSSSSSSB-EB-HHHHHHHHHHHHHHHHHTTTTTSGGG-G
T ss_pred cCCcCHHHHHHHHHHHHHHhcchhhHHHhhhhhcccCCcCCCCCcccccCCCHHHccccccccHHHHHHhcCCCCCCCCc
Confidence 4678899999999999999999999999999999999999875443 389999999999999999999999999999999
Q ss_pred CCCCCCCC-CCccc
Q psy8180 81 SRFPVSEN-NGLCM 93 (471)
Q Consensus 81 ~~fP~~~~-~~~C~ 93 (471)
++||+.++ +..|+
T Consensus 103 ~~lP~~~~~~~~C~ 116 (116)
T PF01392_consen 103 SNLPESNSDSESCI 116 (116)
T ss_dssp GGSS-TTTSTTCCB
T ss_pred ccCCCCCCCCCCCC
Confidence 99998764 55664
No 34
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.63 E-value=5.4e-17 Score=157.56 Aligned_cols=180 Identities=16% Similarity=0.259 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeec
Q psy8180 147 LVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVD 226 (471)
Q Consensus 147 ~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~ 226 (471)
.++....+.+++|+++.+++++||...|+..+.+.+....++++.++.++.+++....- +.+ ..+
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~---------~~~------~~~ 66 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQT---------FSP------IST 66 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhc---------ccc------ccc
Confidence 46777888888999999999999987665333445566788888888888777653110 000 000
Q ss_pred CCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCceee
Q psy8180 227 ALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTG 306 (471)
Q Consensus 227 g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~~g 306 (471)
.++..|.+.++++|||.++++.|+.+++++.|....+.. .+-+++.++|++++||+|++.+++.++.+..+. .+.
T Consensus 67 -~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~--~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y--~~~ 141 (242)
T PF00002_consen 67 -TNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVF--NSSRRRFWWYYLIGWGIPALIVVISVAVNSDGY--GND 141 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEee--cccchhhheeeeeeecCcceeeeeeeeeccccc--ccc
Confidence 122359999999999999999999999999998876542 222566789999999999999999998883222 225
Q ss_pred EEEeeeCCc-eeeehhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8180 307 LCYISEPAI-LVYLIIPYAVLLLIGTVVGVFGAAALMKVRK 346 (471)
Q Consensus 307 ~CwI~~~~~-~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~ 346 (471)
.||+++++. .+.+++|+.+.++++.++++.+++.+.+.++
T Consensus 142 ~CWl~~~~~~~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~ 182 (242)
T PF00002_consen 142 NCWLSNDWGFIWAFVGPVLIILLINIVIFILVLRVLVRKSR 182 (242)
T ss_dssp -----------------------------------------
T ss_pred cccccCCCceEEEEEecccceecccchhheeeEEeehhhhh
Confidence 799999767 7889999999999999999999888777555
No 35
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.19 E-value=2.4e-10 Score=108.34 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCChhHHHHHHHHHHHHHHHHHH-hc-CCCCccccCCCCCCCCCceeee
Q psy8180 149 ERWMRALSWLCFTSTLFTLLTFWV-DGSRFRYPERPVIFIAFCYNLISFVMIMK-SS-LGPNALTCVTPPSPDAVPYIAV 225 (471)
Q Consensus 149 ~~~~~v~s~ls~~~tlf~ilTF~i-~~~r~~yp~~~iifl~~c~~~~sl~~li~-~~-~g~~~i~C~~~~~g~r~~~~~~ 225 (471)
+....+.|.+|+++++.++..|.. +++|..+-.+-|+.+.++.++.|+++++. .. ..++ + ..
T Consensus 4 r~~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~---------~-----i~- 68 (201)
T PF11710_consen 4 RIGSIVISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARG---------G-----II- 68 (201)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------C-----ee-
Confidence 344556677777777666666643 33333333467889999999999999883 21 1111 1 11
Q ss_pred cCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cchh---h----hhhhhhHHHHHHHHHHHHHHHHHHHh-
Q psy8180 226 DALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANK-WSSE---A----LHSLSTYYHIAAWGIPAVYAQLALAL- 296 (471)
Q Consensus 226 ~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k-~~~~---~----i~~~~~~~h~~aw~ip~i~tii~l~~- 296 (471)
.+++.|.++|++.|.+..++.+|-+++|++-|+...++ |..+ . +.+.....-.+.+++|++...++...
T Consensus 69 --~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~ 146 (201)
T PF11710_consen 69 --APSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGL 146 (201)
T ss_pred --CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhcc
Confidence 24678999999999999999999999999888776554 2111 1 11111122244457777777766655
Q ss_pred cccCCCceeeEEEeeeCCc---eeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8180 297 HHVSGDELTGLCYISEPAI---LVYLIIPYAVLLLIGTVVGVFGAAALMKVRKEVR 349 (471)
Q Consensus 297 ~~v~~~~~~g~CwI~~~~~---~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~ 349 (471)
+....++..+|||++.+.. .++-|+|..+..+...+.++.... .+|+..|
T Consensus 147 ~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~---~lrr~~~ 199 (201)
T PF11710_consen 147 GGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFF---YLRRRIR 199 (201)
T ss_pred ccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhc
Confidence 3333455667999998885 778899999999999998888877 4444543
No 36
>KOG4564|consensus
Probab=99.18 E-value=1.7e-09 Score=113.06 Aligned_cols=179 Identities=16% Similarity=0.222 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHH--HHHHHHHHHHHHHhc--CCCCccccCCCCCCCCCceeeecCC
Q psy8180 153 RALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIA--FCYNLISFVMIMKSS--LGPNALTCVTPPSPDAVPYIAVDAL 228 (471)
Q Consensus 153 ~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~--~c~~~~sl~~li~~~--~g~~~i~C~~~~~g~r~~~~~~~g~ 228 (471)
.+.-.+|+++-+.+++.|...++ .|= .|..|-++ +++.+-++++++... .-+..-.+.++ .. ..-....
T Consensus 152 tvGyslSl~sL~vAl~If~~FR~-L~C-tRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~-~~----~~~~~~~ 224 (473)
T KOG4564|consen 152 TVGYSLSLVSLLVALIIFLYFRS-LHC-TRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSD-TS----LHCLISS 224 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hcc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cc----ccccccc
Confidence 33344555544444555544443 222 14444444 456667777777532 11112222221 11 0101113
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCceeeEE
Q psy8180 229 QSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTGLC 308 (471)
Q Consensus 229 ~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~~g~C 308 (471)
....|.+..+++|||.++-.+|+++.++.++.....-..+| +++.+.|.+++||+|++++++=...+.+..|. .|
T Consensus 225 ~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~se--r~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~---~C 299 (473)
T KOG4564|consen 225 NPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFSE--RRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDT---GC 299 (473)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeccC--ccHHHHHHHHhhCCcHHHhhhHHhHheeeccc---cc
Confidence 45789999999999999999999999998887666544454 46678899999999999999998888776655 79
Q ss_pred EeeeCCc--eeeehhHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 309 YISEPAI--LVYLIIPYAVLLLIGTVVGVFGAAALMK 343 (471)
Q Consensus 309 wI~~~~~--~~~~~~P~~i~l~ig~~fl~~~~~~i~~ 343 (471)
|..+++. .+-.=+|+...++++.+|++.+++.|.+
T Consensus 300 W~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~ 336 (473)
T KOG4564|consen 300 WDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVT 336 (473)
T ss_pred cccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 5555699999999999999999998884
No 37
>KOG4289|consensus
Probab=98.92 E-value=1.2e-08 Score=114.34 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeec
Q psy8180 147 LVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVD 226 (471)
Q Consensus 147 ~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~ 226 (471)
-+...+-+...+++++.+.+++.-+..+....+..++-.-+++...+..+.|+++..
T Consensus 2164 ~l~~~t~a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l~~L~Fv~gi~----------------------- 2220 (2531)
T KOG4289|consen 2164 PLKMTTYAAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGLAQLVFVLGIN----------------------- 2220 (2531)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhHHHHHhhhhcc-----------------------
Confidence 344555555555655554444333333332222233434445555555555544320
Q ss_pred CCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCceee
Q psy8180 227 ALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTG 306 (471)
Q Consensus 227 g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~~g 306 (471)
.....|+++++++||+.++-+.|.++.++..|.+..-.-++ .-..+|+++.|++|++++..+.++. .
T Consensus 2221 -~nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~t----g~mrfy~~vGwgvPa~itglavgld--------D 2287 (2531)
T KOG4289|consen 2221 -QNQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVDT----GPMRFYYLVGWGVPALITGLAVGLD--------D 2287 (2531)
T ss_pred -cCchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC----CceeEEEEeecchhhheeeeeeccc--------c
Confidence 12457999999999999999999999999999776542222 2356889999999999998887655 5
Q ss_pred EEEeeeCCc-eeeehhHHHHHHHHHHHHHHHHHH
Q psy8180 307 LCYISEPAI-LVYLIIPYAVLLLIGTVVGVFGAA 339 (471)
Q Consensus 307 ~CwI~~~~~-~~~~~~P~~i~l~ig~~fl~~~~~ 339 (471)
.||++.++. .|-|.+|++++++++.+..++...
T Consensus 2288 fCwlS~h~~LiWsfagPigl~i~ms~~~~~lsa~ 2321 (2531)
T KOG4289|consen 2288 FCWLSPHDTLIWSFAGPIGLVILMSFYAAALSAR 2321 (2531)
T ss_pred eeecccchheeeeecccceeeehHHHHHHHHHHH
Confidence 899999988 899999999999888765554443
No 38
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.74 E-value=4.4e-07 Score=91.71 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCC---ChhHHHHHHHHHHHHHHHHHHhc--CCCCccccCCCCCCCC
Q psy8180 148 VERWMRALSWLCFTSTLFTLLTFW---VDGSRFRYP---ERPVIFIAFCYNLISFVMIMKSS--LGPNALTCVTPPSPDA 219 (471)
Q Consensus 148 ~~~~~~v~s~ls~~~tlf~ilTF~---i~~~r~~yp---~~~iifl~~c~~~~sl~~li~~~--~g~~~i~C~~~~~g~r 219 (471)
.+..-.+.|+++++++++-++--- -.+.+.+-| .|+++.+++|.++.++|-+++.. .|..++.=+..+..
T Consensus 29 f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~-- 106 (405)
T PF02101_consen 29 FNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVN-- 106 (405)
T ss_pred hhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCC--
Confidence 344444555666666666554210 000011111 37888999999999999999854 34322211110000
Q ss_pred CceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccc
Q psy8180 220 VPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHV 299 (471)
Q Consensus 220 ~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v 299 (471)
..+-.....|+....-+|||.+|.+.|.++.|++.|+..+++-+. .....||+++|+.|+++++.-+.+=-+
T Consensus 107 ----~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag~----~~~~lYH~~aWgl~~lL~~~Gl~~Ly~ 178 (405)
T PF02101_consen 107 ----GTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAGR----STIWLYHMMAWGLPALLCAEGLAMLYY 178 (405)
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCCC----cchhHHHHHHHHHHHHHHHhccceeec
Confidence 001112357999999999999999988899999999987764221 234799999999999999876665433
Q ss_pred CCCceeeEEEeeeCCc---eeeehhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 300 SGDELTGLCYISEPAI---LVYLIIPYAVLLLIGTVVGVFGAAALMKV 344 (471)
Q Consensus 300 ~~~~~~g~CwI~~~~~---~~~~~~P~~i~l~ig~~fl~~~~~~i~~i 344 (471)
.+ . .-|--+.+.. +...|+|+.++++.+=+++.....++-+.
T Consensus 179 Ps-~--~~Ce~~l~~alphYvttY~PlllVlvaNPiLy~~a~~~V~~~ 223 (405)
T PF02101_consen 179 PS-I--SRCESGLEHALPHYVTTYIPLLLVLVANPILYIKAVRAVASL 223 (405)
T ss_pred CC-H--HhhhhhhhhcchhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 21 1 1375443333 66789999999999999999887766553
No 39
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.27 E-value=0.00012 Score=74.47 Aligned_cols=163 Identities=10% Similarity=0.142 Sum_probs=94.1
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChh-HHHHHHHHHHHHHHHHHHhcCCCCccc
Q psy8180 132 PRCDEDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERP-VIFIAFCYNLISFVMIMKSSLGPNALT 210 (471)
Q Consensus 132 ~pC~~p~~ft~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~-iifl~~c~~~~sl~~li~~~~g~~~i~ 210 (471)
.+|+.. ...+++...+.....+.+++++++.++.+.... +++.+.|... +.-++++.++..+.......
T Consensus 28 ~~~~~~-~~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~--~~~~~~~~~~ll~~laisDll~~~~~~~~~~------- 97 (335)
T PHA03087 28 ADCDLN-IGYDTNSTILIVVYSTIFFFGLVGNIIVIYVLT--KTKIKTPMDIYLLNLAVSDLLFVMTLPFQIY------- 97 (335)
T ss_pred CCCCcc-ccccchhhHHHHHHHHHHHHHHHhhHhEEeeeh--hccccCchHHHHHHHHHHHHHHHHhHHHHHH-------
Confidence 455554 444566667777777778888888877665543 2244544333 34566666554443222210
Q ss_pred cCCCCCCCCCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhh--hhhhhhHHHHHHHHHHHH
Q psy8180 211 CVTPPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEA--LHSLSTYYHIAAWGIPAV 288 (471)
Q Consensus 211 C~~~~~g~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~--i~~~~~~~h~~aw~ip~i 288 (471)
... .+ + ...++..|.+..++.+.+..++..=.++++++=|++..+-...+. -.++.....++.|.++++
T Consensus 98 ~~~--~~-~------~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~ 168 (335)
T PHA03087 98 YYI--LF-Q------WSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISII 168 (335)
T ss_pred HHh--CC-C------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHH
Confidence 000 00 0 012457899999998888777665557888988887653211111 123344455677999887
Q ss_pred HHHHHHHhcccCCCceeeEEEeeeC
Q psy8180 289 YAQLALALHHVSGDELTGLCYISEP 313 (471)
Q Consensus 289 ~tii~l~~~~v~~~~~~g~CwI~~~ 313 (471)
.++..+....+..+.....|.....
T Consensus 169 ~~~p~~~~~~~~~~~~~~~C~~~~~ 193 (335)
T PHA03087 169 ETTPILFVYTTKKDHETLICCMFYN 193 (335)
T ss_pred HhccHhheeeeeccCCCceEEecCC
Confidence 7776666555544444557876544
No 40
>PHA02834 chemokine receptor-like protein; Provisional
Probab=97.98 E-value=0.0024 Score=64.88 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=91.1
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccC
Q psy8180 133 RCDEDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCV 212 (471)
Q Consensus 133 pC~~p~~ft~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~ 212 (471)
+|+.. ..+++....+.....+..++++++.++.+..+.-++++ +..+--++-+|++.++..++. .+... ...
T Consensus 17 ~~~~~-~~~~~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~~~~l--P~~i~-~~~--- 88 (323)
T PHA02834 17 ECDFE-MVNSDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLMLVFSF--PFIIH-NDL--- 88 (323)
T ss_pred CCccc-ccccchhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHHHHHH--HHHHH-HHc---
Confidence 56655 45555556667777888889999998887766533322 333445566777777653322 11110 000
Q ss_pred CCCCCCCCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhh-hhhhhhHHHHHHHHHHHHHHH
Q psy8180 213 TPPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEA-LHSLSTYYHIAAWGIPAVYAQ 291 (471)
Q Consensus 213 ~~~~g~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~-i~~~~~~~h~~aw~ip~i~ti 291 (471)
. + . -.++..|.+.+++.+.+..++..=.+.++++=|++..+-..... ..++.....+++|.++++.++
T Consensus 89 ~---~-----w---~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~ 157 (323)
T PHA02834 89 N---E-----W---IFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSM 157 (323)
T ss_pred C---C-----c---CCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHh
Confidence 0 0 0 02456899999887777666766668888888887653211111 112233445678999988887
Q ss_pred HHHHhcccCCCceeeEEE
Q psy8180 292 LALALHHVSGDELTGLCY 309 (471)
Q Consensus 292 i~l~~~~v~~~~~~g~Cw 309 (471)
.++.....+.......|.
T Consensus 158 P~~~~~~~~~~~~~~~C~ 175 (323)
T PHA02834 158 PAMVLYYVDNTDNLKQCI 175 (323)
T ss_pred hHHHHHHhccCCCceEEe
Confidence 655443333222234685
No 41
>PHA03234 DNA packaging protein UL33; Provisional
Probab=97.96 E-value=0.0018 Score=66.37 Aligned_cols=162 Identities=10% Similarity=0.027 Sum_probs=93.2
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCC-CChhHHHHHHHHHHHHHHHHHHhcCCCCcc
Q psy8180 132 PRCDEDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGS-RFRY-PERPVIFIAFCYNLISFVMIMKSSLGPNAL 209 (471)
Q Consensus 132 ~pC~~p~~ft~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~-r~~y-p~~~iifl~~c~~~~sl~~li~~~~g~~~i 209 (471)
.||+.. --.+.+.......-.+.-++++++.+..+.+..+.++ +.|. .+--++-+|++.++..+..........
T Consensus 20 ~~c~~~-~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~--- 95 (338)
T PHA03234 20 ASCIST-PTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNRE--- 95 (338)
T ss_pred CCCcCc-hHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 455543 2222344445556666777788888888887664433 3233 345567788888877553322221110
Q ss_pred ccCCCCCCCCCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHH
Q psy8180 210 TCVTPPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVY 289 (471)
Q Consensus 210 ~C~~~~~g~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~ 289 (471)
.+ - ..++..|.+.+++.+....++++-.+++|++=|++..+........++.....++.|.+.++.
T Consensus 96 ------~~-----w---~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s~l~ 161 (338)
T PHA03234 96 ------AL-----F---NFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMC 161 (338)
T ss_pred ------CC-----c---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 00 0 024678999999999999999888899999999877543211111111222234458888777
Q ss_pred HHHHHHhcccCCCc-eeeEEEee
Q psy8180 290 AQLALALHHVSGDE-LTGLCYIS 311 (471)
Q Consensus 290 tii~l~~~~v~~~~-~~g~CwI~ 311 (471)
++-.+...+...++ ....|...
T Consensus 162 ~~P~l~~~~~~~~~~~~~~C~~~ 184 (338)
T PHA03234 162 AIPAALFVKTEGKKGNYGKCNIH 184 (338)
T ss_pred HhhHhHeeeeeecCCCCCcCccc
Confidence 76666554432222 12368654
No 42
>PHA03235 DNA packaging protein UL33; Provisional
Probab=97.78 E-value=0.015 Score=61.34 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC-CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCc
Q psy8180 144 DKNLVERWMRALSWLCFTSTLFTLLTFWVD-GSR-FRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVP 221 (471)
Q Consensus 144 ~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~-~~r-~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~ 221 (471)
.+.....+..++.++++++.++.+.++... +.| .+.+..-++-+|++.++..+ .+-..+... . . .
T Consensus 31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~-~lP~~i~~~------~---~-~-- 97 (409)
T PHA03235 31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVF-VLPFIMLSN------Q---G-L-- 97 (409)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHH-HHHHHHHhc------C---c-c--
Confidence 344556667777778888898888876543 333 34556667788888887533 222111110 0 0 0
Q ss_pred eeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhh-hhhhhHHHHHHHHHHHHHHHHHHH
Q psy8180 222 YIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEAL-HSLSTYYHIAAWGIPAVYAQLALA 295 (471)
Q Consensus 222 ~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i-~~~~~~~h~~aw~ip~i~tii~l~ 295 (471)
. +.++..|.+.+++.+....+++.=.++++++=|+++.+....... .++.....++.|.++++.++..+.
T Consensus 98 -~---~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~ 168 (409)
T PHA03235 98 -L---SGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPV 168 (409)
T ss_pred -c---cCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHH
Confidence 1 123578999999888887777766688999989887542211112 233455567889999888876543
No 43
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=97.76 E-value=0.0012 Score=62.45 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeecCCCCcchHHHHHHHH
Q psy8180 162 STLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVDALQSPTCTFVFLVLY 241 (471)
Q Consensus 162 ~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~g~~~~~C~~~~~l~~ 241 (471)
|.++.++++.-.+++.+..+.-+.-++++.++.++......... ... ++ . . .++..|.+..++.+
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~--~~~-~~---~-~--------~~~~~C~~~~~~~~ 65 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYS--LLF-DD---W-I--------FSSFLCRIFGFLFY 65 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHH-SS---C-T--------SHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccc--ccc-cc---c-c--------cccccccccccccc
Confidence 45566777665444333334455667777777766554433211 000 00 0 0 23468999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhcccchhhh--hhhhhHHHHHHHHHHHHHHHHHHHhccc-C-CCceeeEEEeeeCCc
Q psy8180 242 YLSMSAGIWWVILTLAWYLSAANKWSSEAL--HSLSTYYHIAAWGIPAVYAQLALALHHV-S-GDELTGLCYISEPAI 315 (471)
Q Consensus 242 ~f~laa~~Ww~il~~~w~l~~~~k~~~~~i--~~~~~~~h~~aw~ip~i~tii~l~~~~v-~-~~~~~g~CwI~~~~~ 315 (471)
.+..++....+.++++=|++..+....... .++.....+++|.++++..+..+..... + .+...+.|++.....
T Consensus 66 ~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 143 (257)
T PF00001_consen 66 FSSFSSIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSS 143 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999888888899999999887642222222 2445667788999999999888766332 2 222257899977653
No 44
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=97.48 E-value=0.00013 Score=64.85 Aligned_cols=66 Identities=26% Similarity=0.457 Sum_probs=49.7
Q ss_pred cccCCchhhhhhhccccccccccc--cCcccCCchhhHHHHhc-CCHhhh---hh---ccCCCCCCCCCCCCCCCC
Q psy8180 21 INSNCSRHIRFFLCSVYAPLCSEH--VIGAIPSCRGLCEDVKA-DCLPTL---TA---LNFILPPLFNCSRFPVSE 87 (471)
Q Consensus 21 ~~~~C~~~l~~fLCs~~~P~C~~~--~~~~i~PCrslC~~~~~-~C~~~l---~~---~~~~wP~~l~C~~fP~~~ 87 (471)
++..|.+++..+||..+||.|.+. .+.|.+.||+.|+.+++ .|..-. +. .|... ..-||+.+|..+
T Consensus 48 ls~~C~~~a~~~lC~~~FP~C~~~~~~~~p~~iCre~C~~l~~~~C~~E~~~~~~~~~~g~~~-~lp~C~~LP~~~ 122 (135)
T cd07459 48 VSPKCQQYALPSLCYYAFPLCDEGSSTPKPRRICRDECELLENDLCKKEYAIAKRHPLIGHQL-LLPDCSSLPSPG 122 (135)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHHHhHhHHHHHHHHhCcccCCcc-CCCCccCCCCCC
Confidence 455899999999999999999874 34778889999999998 897542 22 12122 245899998764
No 45
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.95 E-value=0.25 Score=49.50 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=107.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8180 181 ERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYL 260 (471)
Q Consensus 181 ~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l 260 (471)
+-+...+.+...+.++-+.+..+.=+++. ..+ -+..|=++.-+..-...+.-.=-++++-.++.
T Consensus 23 N~~~~~li~Wl~l~nl~~~INaiIW~~n~-------~~~---------~~~wCDI~~kl~~~~~~g~~~a~lcI~r~L~~ 86 (283)
T PF02076_consen 23 NIGTCSLIFWLFLSNLIYFINAIIWRDND-------INW---------WPVWCDISTKLIIGSSVGIPAASLCIMRRLYR 86 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCC-------Ccc---------CceeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666543211111 001 22567666554443322222111333444444
Q ss_pred Hhhccc---chhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCceee-EEEeeeCCc---eeeehhHHHHHHHHHHHH
Q psy8180 261 SAANKW---SSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTG-LCYISEPAI---LVYLIIPYAVLLLIGTVV 333 (471)
Q Consensus 261 ~~~~k~---~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~~g-~CwI~~~~~---~~~~~~P~~i~l~ig~~f 333 (471)
.+..+- +....+|+...=..+++|+|++..+.....+....|-..+ +|.-...+. ..++++|-.+.-+++.++
T Consensus 87 I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vY 166 (283)
T PF02076_consen 87 IASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVY 166 (283)
T ss_pred HhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 1111133333445889999999999988877766665555 699877776 667789999999999999
Q ss_pred HHHHHHHHHHHHhhhhc----c--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 334 GVFGAAALMKVRKEVRE----V--GRNTIKLERLIARLTVFWSLYTMPAVGMLACLLY 385 (471)
Q Consensus 334 l~~~~~~i~~ir~~~~~----~--~~~~~kl~~l~~rigif~~ly~~~~~~~~~~~~Y 385 (471)
-++.++..+|.|+++++ + +-++++. .|...++...++..+=+-.+.++
T Consensus 167 a~lt~~~f~~rr~~f~~~l~~s~s~l~~~Rf----~RL~~la~~~i~~~~P~~i~~~v 220 (283)
T PF02076_consen 167 AILTLRRFIRRRKQFRDILSSSNSGLNTSRF----FRLLALALVIILIYLPLSIYYLV 220 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998763 1 2223333 45555555555444444445555
No 46
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=96.82 E-value=0.47 Score=50.13 Aligned_cols=145 Identities=8% Similarity=0.122 Sum_probs=84.6
Q ss_pred CCcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CChhHHHHHHHHHHHHHHHHHHhcCCCC
Q psy8180 129 QCTPRCDEDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRY-PERPVIFIAFCYNLISFVMIMKSSLGPN 207 (471)
Q Consensus 129 ~C~~pC~~p~~ft~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~y-p~~~iifl~~c~~~~sl~~li~~~~g~~ 207 (471)
+...||..+ + ....+.....+..++++++.++.+.... . ++.|. .+-.++-+|++.++..+.. .++.- .
T Consensus 87 ~~~~~c~~~--~---~~~~l~~~y~lvfvlgliGN~LVl~il~-~-k~lrt~t~i~llnLAisDLl~~l~l--Pf~i~-~ 156 (417)
T PHA02638 87 NIKNKCMYP--S---ISEYIKIFYIIIFILGLFGNAAIIMILF-C-KKIKTITDIYIFNLAISDLIFVIDF--PFIIY-N 156 (417)
T ss_pred ccCCCCCcc--c---hhhHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCCCHhHHHHHHHHHHHHHHHHHH--HHHHH-H
Confidence 456677332 2 3456677777888899999988775432 3 33332 2444556666666543321 11110 0
Q ss_pred ccccCCCCCCCCCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhh--hhhhHHHHHHHHH
Q psy8180 208 ALTCVTPPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALH--SLSTYYHIAAWGI 285 (471)
Q Consensus 208 ~i~C~~~~~g~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~--~~~~~~h~~aw~i 285 (471)
.. .+ -. .++..|.+..++.+.+..++++-.++++++=|++..+-....... +......+++|.+
T Consensus 157 ~~------~~-----W~---fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~ 222 (417)
T PHA02638 157 EF------DQ-----WI---FGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWIL 222 (417)
T ss_pred Hh------cc-----cc---ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHH
Confidence 00 00 00 245789999888777766666666888999888876421111111 2223456788999
Q ss_pred HHHHHHHHHHhc
Q psy8180 286 PAVYAQLALALH 297 (471)
Q Consensus 286 p~i~tii~l~~~ 297 (471)
.++.++..+...
T Consensus 223 s~l~slP~~~~~ 234 (417)
T PHA02638 223 SLIITSPAYFIF 234 (417)
T ss_pred HHHHHHHHHHHh
Confidence 999888777653
No 47
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=96.14 E-value=0.0049 Score=54.62 Aligned_cols=81 Identities=25% Similarity=0.466 Sum_probs=54.6
Q ss_pred hHHHHHHHhhhhhhc------cccCCchhhhhhhccccccccccc--cCcccCCchhhHHHHhcC-CHhh---hhhc---
Q psy8180 6 MGFNRMYRLQALMPL------INSNCSRHIRFFLCSVYAPLCSEH--VIGAIPSCRGLCEDVKAD-CLPT---LTAL--- 70 (471)
Q Consensus 6 tQ~~~~~~l~~~~~L------~~~~C~~~l~~fLCs~~~P~C~~~--~~~~i~PCrslC~~~~~~-C~~~---l~~~--- 70 (471)
+|.++..++.....+ +...|.+.+...||...||.|.+. .+.+.+-||+-|+.+++. |..- ++..
T Consensus 29 ~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~~~p~pr~iCreeC~~l~~~~C~~Ey~~a~~~~~i 108 (140)
T cd07468 29 MQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRSRTPKPRELCRDECEVLENDLCRQEYNIARSNPLI 108 (140)
T ss_pred chHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCCCCCCCcchHHHHHHHHHHHHhHHHHHHHhhcccc
Confidence 555666555532222 334899999999999999999863 335666799999999776 8643 2221
Q ss_pred cCCCCCCCCCCCCCCCC
Q psy8180 71 NFILPPLFNCSRFPVSE 87 (471)
Q Consensus 71 ~~~wP~~l~C~~fP~~~ 87 (471)
|..+ ..-||+++|..+
T Consensus 109 ~~~~-~LP~C~~LP~~~ 124 (140)
T cd07468 109 LMQL-QLPKCEELPLPE 124 (140)
T ss_pred cccc-cCCchhhCCCCC
Confidence 2222 235799999764
No 48
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=96.05 E-value=0.0063 Score=54.08 Aligned_cols=90 Identities=21% Similarity=0.380 Sum_probs=59.3
Q ss_pred chHHHHHHHhhhhhhcc------ccCCchhhhhhhccccccccccc--cCcccCCchhhHHHHhcC-CHhh---hhhccC
Q psy8180 5 SMGFNRMYRLQALMPLI------NSNCSRHIRFFLCSVYAPLCSEH--VIGAIPSCRGLCEDVKAD-CLPT---LTALNF 72 (471)
Q Consensus 5 ~tQ~~~~~~l~~~~~L~------~~~C~~~l~~fLCs~~~P~C~~~--~~~~i~PCrslC~~~~~~-C~~~---l~~~~~ 72 (471)
.+|.++..++......+ +..|.+.+..+||...||.|.+. .+.|.+-||+-|+.+++. |..- ++..+.
T Consensus 28 ~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~~~P~pr~iCreeC~~le~~~C~~Ey~~a~~~~~ 107 (142)
T cd07467 28 HMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSGMPKPRDLCRDECEILENVLCQTEYIFARSNPM 107 (142)
T ss_pred CCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccCCCCCcchHHHHHHHHHHHHHhHHHHHHHHhCcc
Confidence 45666666665333333 44899999999999999999864 345666799999999876 8643 333211
Q ss_pred --CCCCCCCCCCCCCCCC--CCcccC
Q psy8180 73 --ILPPLFNCSRFPVSEN--NGLCMQ 94 (471)
Q Consensus 73 --~wP~~l~C~~fP~~~~--~~~C~~ 94 (471)
.-...=+|+.+|..+. ...|+.
T Consensus 108 i~~~~~LP~C~~LP~~~~~~~~~C~~ 133 (142)
T cd07467 108 ILMRLKLPNCEDLAQPDSPEAANCIR 133 (142)
T ss_pred cccccCCCChhhcCCCCCCCCCCcee
Confidence 1123447999987542 344553
No 49
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=95.71 E-value=0.012 Score=52.50 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=54.6
Q ss_pred chHHHHHHHhhh--hhhc---cccCCchhhhhhhcccccccccccc--CcccCCchhhHHHHhcC-CHhh---hhhc---
Q psy8180 5 SMGFNRMYRLQA--LMPL---INSNCSRHIRFFLCSVYAPLCSEHV--IGAIPSCRGLCEDVKAD-CLPT---LTAL--- 70 (471)
Q Consensus 5 ~tQ~~~~~~l~~--~~~L---~~~~C~~~l~~fLCs~~~P~C~~~~--~~~i~PCrslC~~~~~~-C~~~---l~~~--- 70 (471)
++|.++..++.. |..+ ++..|.+.....||...||.|.+.. +.|.+-||+.|+.+++. |..- ++..
T Consensus 30 ~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~aFP~C~~~~~~p~p~plCredC~a~~~~~C~~Ew~~~e~~~~~ 109 (147)
T cd07469 30 ADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNYAFPECHPSGVGPTPKPLCREDCLAVKELFCYKDWALIEENKQR 109 (147)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCCcCchhHHHHHHHHHHHhHHHHHHHHHhhhc
Confidence 455555444433 4444 3558999999999999999998754 34556699999999887 8643 2211
Q ss_pred c-----CCCCCCCCCCCCCCCC
Q psy8180 71 N-----FILPPLFNCSRFPVSE 87 (471)
Q Consensus 71 ~-----~~wP~~l~C~~fP~~~ 87 (471)
| ..--..-+|+++|..+
T Consensus 110 g~~~~~~~~~~LP~C~~LP~~~ 131 (147)
T cd07469 110 GIYLKSRGHFTLPECESLPSIH 131 (147)
T ss_pred cccccccccccCCchhhcCCCC
Confidence 1 1111123799998764
No 50
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=94.69 E-value=0.37 Score=47.40 Aligned_cols=136 Identities=9% Similarity=0.180 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCChh-HHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeecCCCCcchHHHH
Q psy8180 159 CFTSTLFTLLTFWVDGSRFRYPERP-VIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVDALQSPTCTFVF 237 (471)
Q Consensus 159 s~~~tlf~ilTF~i~~~r~~yp~~~-iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~g~~~~~C~~~~ 237 (471)
++++++..+....-+ |+.|-|... +-..++++.+...+.++..... + .+ . . .+...|-.+-
T Consensus 4 g~~gN~~~i~~~~~~-~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~---~------~~-~---~----i~~~~Cf~~~ 65 (257)
T PF10320_consen 4 GLFGNLLLIILIFRN-KSLRSPCYILICILCFADLICLLGTLPFMLFL---F------RD-H---Q----ITRSECFWQI 65 (257)
T ss_pred EEEccHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHhhHHHHHHHH---H------hh-e---e----ccHHHHHHHH
Confidence 345565555555433 444544333 3455566777666666543210 0 00 0 0 2345799999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCC-ceeeEEEeeeCC
Q psy8180 238 LVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGD-ELTGLCYISEPA 314 (471)
Q Consensus 238 ~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~-~~~g~CwI~~~~ 314 (471)
+..+++..+.....++++++-+++...--..+.+.+ ..|..+.-.+|.+.++.....+-...| +..-.|-.-..-
T Consensus 66 ~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~--~~y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~ 141 (257)
T PF10320_consen 66 FFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTIST--RKYLIILLIFPVIYSIFFTVIGFLYRDDETIVICNPPLAF 141 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhccc--ccchhhHhHHHHHHHHHHHhheeEecCCcccccCCCcccc
Confidence 999999999999999999999987653211222222 226666677888888887776654333 334478774433
No 51
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=92.92 E-value=11 Score=37.87 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCChhHHHHHHHHHH
Q psy8180 149 ERWMRALSWLCFTSTLFTLLTFWVDGS---RFRYPERPVIFIAFCYNL 193 (471)
Q Consensus 149 ~~~~~v~s~ls~~~tlf~ilTF~i~~~---r~~yp~~~iifl~~c~~~ 193 (471)
-....+...++.++..|.++..+.|+. +.+--|.++.-++++-++
T Consensus 10 ~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~ 57 (303)
T PF05296_consen 10 LIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRIL 57 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 344445567888999999999987763 344447777888876444
No 52
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=92.92 E-value=7 Score=39.72 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHhhhhhhheeeecchHHH
Q psy8180 416 VSQITITLLRLFLFLVVGISSGMWVWSSKTC 446 (471)
Q Consensus 416 ~P~~~~~~l~~~~~l~~GI~~~~w~~s~kt~ 446 (471)
.|+..+...++.-.+.-|..+.+|..-.||.
T Consensus 267 ~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtI 297 (313)
T PF10321_consen 267 PPPWLIIIGQISWQLSHGCPPIIYLTLNRTI 297 (313)
T ss_pred ccHHHHHHHHHHHhccCCccceEEEEECHHH
Confidence 4667777778888899999999886655554
No 53
>KOG4220|consensus
Probab=91.95 E-value=0.12 Score=53.47 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHH----HHHHHhcCCCCccccCCCCCCCC
Q psy8180 144 DKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISF----VMIMKSSLGPNALTCVTPPSPDA 219 (471)
Q Consensus 144 ~~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl----~~li~~~~g~~~i~C~~~~~g~r 219 (471)
|.-.+-...+++|.+..++.+..++.|-+|++.-+-.+--++-+|...+++.+ -|....+.|+-
T Consensus 29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W------------ 96 (503)
T KOG4220|consen 29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYW------------ 96 (503)
T ss_pred EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHccc------------
Confidence 33344455666666666677676777777877444334455555555554321 11111122321
Q ss_pred CceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc--cchhhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q psy8180 220 VPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANK--WSSEALHSLSTYYHIAAWGIPAVYAQLALALH 297 (471)
Q Consensus 220 ~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k--~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~ 297 (471)
..+...|-+--.+=|-..-|+++=.++++++=|.+..+- +......|+...-..+||++.+++-+-.+..-
T Consensus 97 -------~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~W 169 (503)
T KOG4220|consen 97 -------PLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFW 169 (503)
T ss_pred -------ccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 124567999999999999999998899999988775431 22222345566778999999999988777766
Q ss_pred cc-CCC--ceeeEEEeeeCCc--------eeeehhHHHHH
Q psy8180 298 HV-SGD--ELTGLCYISEPAI--------LVYLIIPYAVL 326 (471)
Q Consensus 298 ~v-~~~--~~~g~CwI~~~~~--------~~~~~~P~~i~ 326 (471)
++ .|. .-.|-|+|.--+. .+.||+|+.|.
T Consensus 170 qyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM 209 (503)
T KOG4220|consen 170 QYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIM 209 (503)
T ss_pred HhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHH
Confidence 65 222 2246798864443 34567776543
No 54
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=89.89 E-value=23 Score=35.45 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=34.0
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 319 LIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMPAVGM 379 (471)
Q Consensus 319 ~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~~~~~ 379 (471)
...-.++.+++|+.|+..|..-..++|+.=++...+++|+.|...-..+-.+.+++=..++
T Consensus 166 ~~~~A~isli~a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~ 226 (281)
T PF06454_consen 166 AIFIAVISLIAALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMV 226 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455678888999999999887777777522222233455443332233333444444333
No 55
>KOG4219|consensus
Probab=88.23 E-value=11 Score=39.26 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=77.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCC-CCChhHHHHHHHHHHHHHHHHH-Hh--cCCCCccccCCCC
Q psy8180 141 RSEDKNLVERWMRALSWLCFTSTLFTLLTFWV-DGSRFR-YPERPVIFIAFCYNLISFVMIM-KS--SLGPNALTCVTPP 215 (471)
Q Consensus 141 t~~~~~~~~~~~~v~s~ls~~~tlf~ilTF~i-~~~r~~-yp~~~iifl~~c~~~~sl~~li-~~--~~g~~~i~C~~~~ 215 (471)
...+..+....-+++..+.++|.+.++ +.+ -.+|.| -.+--++-+|++.+.+++--.. .+ .... +
T Consensus 31 p~~~~~~wai~yg~l~~vAv~GN~iVl--wIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~--------~ 100 (423)
T KOG4219|consen 31 PAWQQALWAIAYGLLVFVAVVGNLIVL--WIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ--------E 100 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCceEE--EEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------c
Confidence 344444445555555555555653322 222 223333 2245667777777766542211 11 1100 0
Q ss_pred CCCCCceeeecCCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy8180 216 SPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALA 295 (471)
Q Consensus 216 ~g~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~ 295 (471)
--..+..|.++-++---...++++=++.+|++=|+++..-.....-++.++.-.+.+|.+++++..-.+.
T Consensus 101 ----------W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l 170 (423)
T KOG4219|consen 101 ----------WYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLL 170 (423)
T ss_pred ----------cccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhcccee
Confidence 0012345776666666666677777788899999887532112222344667788999999998887777
Q ss_pred hcccC
Q psy8180 296 LHHVS 300 (471)
Q Consensus 296 ~~~v~ 300 (471)
..+++
T Consensus 171 ~s~v~ 175 (423)
T KOG4219|consen 171 YSSVE 175 (423)
T ss_pred eeeeE
Confidence 77653
No 56
>KOG2087|consensus
Probab=87.87 E-value=1.4 Score=45.13 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeec
Q psy8180 147 LVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVD 226 (471)
Q Consensus 147 ~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~ 226 (471)
.++..+=+.+.+..++.++.+++...-+.+..-+.--|.-+|...+++.+ |+.- +.+-|.. . .|+-.+++ .+
T Consensus 26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGi-Yl~~-ia~vD~~--~---~gey~~~a-i~ 97 (363)
T KOG2087|consen 26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGI-YLGL-IASVDAK--T---RGEYYKHA-ID 97 (363)
T ss_pred eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcch-HHHH-HHHhhHH--H---HHHHHHHH-Hh
Confidence 34445555677777888887777654443333222333344444444322 1111 1111111 0 12100011 12
Q ss_pred CCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccc-hhhhh-hhhhHHHHHHHHHHHHHHHHHHHhcccCCCce
Q psy8180 227 ALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWS-SEALH-SLSTYYHIAAWGIPAVYAQLALALHHVSGDEL 304 (471)
Q Consensus 227 g~~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~-~~~i~-~~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~ 304 (471)
=.+..+|.+.||+.-|....+.+=.+.+++.=++++..-.. .++.. +...+-.+.+|....+..++++...... ..
T Consensus 98 W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y--~~ 175 (363)
T KOG2087|consen 98 WQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSY--GA 175 (363)
T ss_pred hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCC--cc
Confidence 13457899999999999999999999999976665542111 12222 2356777899999999999999864332 33
Q ss_pred eeEEEeeeCCc---eeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy8180 305 TGLCYISEPAI---LVYLIIPYAVLLLIGTVVGVFGAAALMKVRKEVREV 351 (471)
Q Consensus 305 ~g~CwI~~~~~---~~~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~ 351 (471)
+|.|.--.... .| .-+.+.+.++.+-+++...+--|+...++++
T Consensus 176 ~~vClPL~~~~~~s~g---~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~ 222 (363)
T KOG2087|consen 176 SSVCLPLHIEEPLSTG---YYLVALLGLNLLAFIIIAFSYGKIYCSLRKG 222 (363)
T ss_pred cceeeecccCCccchh---HHHHHHHHHHHHHHHHHHHHhhhhheeeecC
Confidence 47999765554 44 2334455566555555555555655565544
No 57
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=83.95 E-value=12 Score=37.18 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=35.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhccc-chhh-hhh-hhhHHHHHHHHHHHHHHHHHHHhcccCCCceee
Q psy8180 240 LYYLSMSAGIWWVILTLAWYLSAANKW-SSEA-LHS-LSTYYHIAAWGIPAVYAQLALALHHVSGDELTG 306 (471)
Q Consensus 240 ~~~f~laa~~Ww~il~~~w~l~~~~k~-~~~~-i~~-~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~~g 306 (471)
.|++...-..--+.+|++=+++..+.- .+.+ .++ ..+...++-|+.|.+..+..+.-.++..+...+
T Consensus 82 ~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~ 151 (283)
T PF10323_consen 82 AYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN 151 (283)
T ss_pred HHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc
Confidence 333333333333566777666643321 1111 111 123446778999999988877766665555544
No 58
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=68.72 E-value=52 Score=28.28 Aligned_cols=57 Identities=9% Similarity=0.122 Sum_probs=39.7
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHH
Q psy8180 319 LIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMP 375 (471)
Q Consensus 319 ~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~ 375 (471)
...|..++.++....+...++.+.|+-+.+++++.-+++.-+.+.++|...+.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~ll~~i~~~~~Fs~~n~~~l~~ig~~~l~~~~~ 77 (136)
T PF11188_consen 21 AYWPFLLIGLLVLLLILIALYQLRRLLRNIQKGKPFSPENIRRLRRIGWLLLIISIL 77 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 457777777788877888888888877777665555666667777777665555443
No 59
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=65.68 E-value=1.3e+02 Score=29.03 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Q psy8180 229 QSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHS-LSTYYHIAAWGIPAVYAQLALA 295 (471)
Q Consensus 229 ~~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~-~~~~~h~~aw~ip~i~tii~l~ 295 (471)
.+....+..++.||+.-+-..=-..++++=+.+...-..+|++=+ +.+...++...+|+..+...+.
T Consensus 77 ~~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~ 144 (275)
T PF02118_consen 77 PPFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFI 144 (275)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHc
Confidence 344577777777777666555556666665544432112333222 2222345566677766655554
No 60
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=64.28 E-value=1.7e+02 Score=29.78 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHH-HHHHHHH-------HhcCCCCccccCCCCCC
Q psy8180 146 NLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNL-ISFVMIM-------KSSLGPNALTCVTPPSP 217 (471)
Q Consensus 146 ~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~-~sl~~li-------~~~~g~~~i~C~~~~~g 217 (471)
+.......+.+.++++.+.+++-... .++-|....|.+++.++.+.. -.+.|.+ +.+...+ =.|+
T Consensus 21 ~~~~~~~~~~~~~t~~~s~~Ai~~l~-~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~-dpC~----- 93 (328)
T PF02117_consen 21 RINQIFILIIIIITFIFSVFAIKKLW-KKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSD-DPCS----- 93 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCee-----
Confidence 34445555566666666665554332 444667778899888876654 3444433 1111111 1232
Q ss_pred CCCceeeecCCCCcchHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy8180 218 DAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWW-VILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALAL 296 (471)
Q Consensus 218 ~r~~~~~~~g~~~~~C~~~~~l~~~f~laa~~Ww-~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~ 296 (471)
... ++..|.....+.+++.. ...+- ..|.++=.++...+. . .++.++ ..+..+.++..+..++.
T Consensus 94 -----i~f---~~~eC~~~~~~~~~~~~-~~~~~q~aL~idRl~at~~~~-~---~~~~~~--~~g~~l~i~~li~s~~~ 158 (328)
T PF02117_consen 94 -----ILF---TSSECFPYYYFYYFTNS-GMIFIQFALTIDRLLATFFPK-Y---YSKKSY--IIGIILSILVLILSFIT 158 (328)
T ss_pred -----eEe---ecCceeeeehHHHHHHH-HHHHHHHHHHHHHHHHHhchh-h---hhhhhH--HHHHHHHHHHHHHHHHH
Confidence 111 34568887777666643 33332 445555555443321 1 111111 22223332333333333
Q ss_pred c--ccCCCceee---EEEeeeCCc
Q psy8180 297 H--HVSGDELTG---LCYISEPAI 315 (471)
Q Consensus 297 ~--~v~~~~~~g---~CwI~~~~~ 315 (471)
. -+.+|+.+| .|..-.+..
T Consensus 159 ~~~i~~~~p~~gyv~~C~~~p~~s 182 (328)
T PF02117_consen 159 GFIIYWDDPLDGYVPSCFYPPKNS 182 (328)
T ss_pred eeEEEeCCCCccccccccCCChhH
Confidence 3 234567666 699876665
No 61
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=60.84 E-value=46 Score=26.49 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhh
Q psy8180 356 IKLERLIARLTVFWSLYTMPAVGMLACLLYEWWQRPQEHALQALQAIDCTAPSCQIDPPRVSQITITLLRLFLFLVVGIS 435 (471)
Q Consensus 356 ~kl~~l~~rigif~~ly~~~~~~~~~~~~Ye~~~~~~w~~~~~~~~~~~~~C~~~~~~~~~P~~~~~~l~~~~~l~~GI~ 435 (471)
+|+++.+-.+.++=+.|++.+++=++.+.+.+.+. ...+|++.++.+-.+++-+-|..
T Consensus 5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~----------------------~~~~p~~~l~~i~~~~~~~~G~V 62 (76)
T PF11970_consen 5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE----------------------IGHGPSFWLFCIAGFMQPSQGFV 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------cCCCCchHHHHHHHHHHHccCHH
Confidence 45666655666666667766665555555555422 12578999999999999888988
Q ss_pred -heeeecchH
Q psy8180 436 -SGMWVWSSK 444 (471)
Q Consensus 436 -~~~w~~s~k 444 (471)
+.++.+++|
T Consensus 63 D~lvf~~~er 72 (76)
T PF11970_consen 63 DCLVFTLRER 72 (76)
T ss_pred Hhhheeeecc
Confidence 677777775
No 62
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=59.82 E-value=5.4 Score=42.22 Aligned_cols=44 Identities=32% Similarity=0.732 Sum_probs=34.7
Q ss_pred CCchhhhhhhccccccccccc---------------------------------------cC--------cccCCchhhH
Q psy8180 24 NCSRHIRFFLCSVYAPLCSEH---------------------------------------VI--------GAIPSCRGLC 56 (471)
Q Consensus 24 ~C~~~l~~fLCs~~~P~C~~~---------------------------------------~~--------~~i~PCrslC 56 (471)
.|...=+.-||++-.|+|++. ++ +-++||.++|
T Consensus 302 DC~~aYk~WLCaVtIPRC~d~~~~~~~~~~r~~~~~~~ng~~~~~~~~~~~~~~~sRN~~Id~~i~PgpY~EiLPC~dlC 381 (427)
T PF12929_consen 302 DCARAYKNWLCAVTIPRCTDFSSTSPYLQPRNAGQPFPNGTSLPATLRNSRASNSSRNPFIDEVIKPGPYKEILPCIDLC 381 (427)
T ss_pred HHHHHHhhcccEeecccccCCCCCCcccccccccCCCcCCcccccccccccccCCCCCcccccccCCCCcceeccHHHHH
Confidence 566666789999999999752 00 2356999999
Q ss_pred HHHhcCCHhhh
Q psy8180 57 EDVKADCLPTL 67 (471)
Q Consensus 57 ~~~~~~C~~~l 67 (471)
.++.++|.+.+
T Consensus 382 y~vVrsCP~~l 392 (427)
T PF12929_consen 382 YAVVRSCPADL 392 (427)
T ss_pred HHHHhcCchhh
Confidence 99999999876
No 63
>PRK11281 hypothetical protein; Provisional
Probab=52.86 E-value=4.1e+02 Score=31.97 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=17.7
Q ss_pred hcccchhhhhhhhhHHHHHHHHH-HHHHH
Q psy8180 263 ANKWSSEALHSLSTYYHIAAWGI-PAVYA 290 (471)
Q Consensus 263 ~~k~~~~~i~~~~~~~h~~aw~i-p~i~t 290 (471)
..+|+.+..++..+.+.-..|.+ |+++.
T Consensus 608 HF~w~~~~~~~~~~~~~~~~~~~~pl~~~ 636 (1113)
T PRK11281 608 HFGMPKEQVSHFRRQIVRLSLALLPLLFW 636 (1113)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888887777666565555554 55553
No 64
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.49 E-value=6.2e+02 Score=30.51 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=20.0
Q ss_pred hcccchhhhhhhhhHHHHHHHH-HHHHHHHH
Q psy8180 263 ANKWSSEALHSLSTYYHIAAWG-IPAVYAQL 292 (471)
Q Consensus 263 ~~k~~~~~i~~~~~~~h~~aw~-ip~i~tii 292 (471)
..+|+.+..++..+++....|. +|++++.+
T Consensus 587 HF~w~~~~v~~~~~~~~~~~~~~~pl~~~~~ 617 (1109)
T PRK10929 587 HFGWPRERVARAMRYYLLSIGLIVPLIMALI 617 (1109)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888887777777666666 46555433
No 65
>PHA03029 hypothetical protein; Provisional
Probab=42.52 E-value=1.5e+02 Score=23.45 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8180 339 AALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMPAVGMLACLLYE 386 (471)
Q Consensus 339 ~~i~~ir~~~~~~~~~~~kl~~l~~rigif~~ly~~~~~~~~~~~~Ye 386 (471)
.++.|+|..+.++-+..+|=.- -..-| .+.++|++...++||+.
T Consensus 32 lsi~k~raai~qnirsrrkg~y---wflnf-~fwllp~al~a~fyffs 75 (92)
T PHA03029 32 LSINKIRAAIDQNIRSRRKGLY---WFLNF-LFWLLPFALAAAFYFFS 75 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH---HHHHH-HHHHHHHHHHHHHHHHH
Confidence 4566777776543222222111 11122 34566777777777765
No 66
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=40.34 E-value=1.3e+02 Score=33.38 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=43.9
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHhcchhhHH
Q psy8180 318 YLIIPYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARL-TVFWSLYTMPAVGMLAC-LLYEWWQRPQEHA 395 (471)
Q Consensus 318 ~~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~~~~~~~~~kl~~l~~ri-gif~~ly~~~~~~~~~~-~~Ye~~~~~~w~~ 395 (471)
++|+=+.+=+.+.++...++..+++++-+.-+ .|....+ ++.|+ ++|++.-++|..++... -+....--+.|.+
T Consensus 38 ~~~~~v~vnl~l~l~L~~vi~r~v~~l~~arr-~Gka~sR---Lh~Riv~lFslvav~Pavivaifs~~~in~gld~WF~ 113 (712)
T COG5000 38 YILALVAVNLALLLILSAVIGRKVIRLLKARR-LGKAGSR---LHVRIVGLFSLVAVIPAVIVAIFSAQFINLGLDRWFS 113 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 45555555555555556666677777544322 2333344 45576 79999999999886533 3333344566765
No 67
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=40.14 E-value=3.6e+02 Score=26.25 Aligned_cols=15 Identities=7% Similarity=0.561 Sum_probs=10.0
Q ss_pred CCCChhhHHHHHHHH
Q psy8180 138 ALYRSEDKNLVERWM 152 (471)
Q Consensus 138 ~~ft~~~~~~~~~~~ 152 (471)
..||-||....+...
T Consensus 19 ~hfS~de~gi~~~~~ 33 (257)
T PF10192_consen 19 SHFSADEQGILEIYL 33 (257)
T ss_pred cccChhhcCcHHHHH
Confidence 478888876655544
No 68
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=39.53 E-value=1.6e+02 Score=29.51 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=46.5
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-----C--CCccccCCCCCCCCCceeeecCCCCcchHHHHHHHHHH
Q psy8180 171 WVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSL-----G--PNALTCVTPPSPDAVPYIAVDALQSPTCTFVFLVLYYL 243 (471)
Q Consensus 171 ~i~~~r~~yp~~~iifl~~c~~~~sl~~li~~~~-----g--~~~i~C~~~~~g~r~~~~~~~g~~~~~C~~~~~l~~~f 243 (471)
.+|-+|.--|+.+++..++.+.++..+-+...+- | .|+-.++. |+- .+.+++.-...=...=+++|.|
T Consensus 108 ~IDVDR~yl~~~piil~sfF~~l~~~~~lA~vWE~VRhWGSw~ERQ~id~-dpf----~~~~d~~R~k~Ef~lPl~FYlf 182 (296)
T PF10361_consen 108 SIDVDRYYLQGLPIILQSFFWYLMQPGTLAAVWEAVRHWGSWQERQFIDP-DPF----ALRQDDRRSKVEFYLPLVFYLF 182 (296)
T ss_pred eeeecHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccccC-Ccc----ccCcccceeeeeehHHHHHHHH
Confidence 3688888889999999998887766555543321 2 34444544 322 1222222222223344566666
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccc
Q psy8180 244 SMSAGIWWVILTLAWYLSAANKWS 267 (471)
Q Consensus 244 ~laa~~Ww~il~~~w~l~~~~k~~ 267 (471)
.. +++|+++-+.|+
T Consensus 183 ~~----------lnFFl~vpRsW~ 196 (296)
T PF10361_consen 183 AW----------LNFFLVVPRSWT 196 (296)
T ss_pred HH----------HHHHeeeccCcc
Confidence 22 467777778886
No 69
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=35.94 E-value=4.2e+02 Score=25.75 Aligned_cols=178 Identities=11% Similarity=0.155 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCCCceeeecCCCCcch
Q psy8180 155 LSWLCFTSTLFTLLTFWVDGS-RFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAVPYIAVDALQSPTC 233 (471)
Q Consensus 155 ~s~ls~~~tlf~ilTF~i~~~-r~~yp~~~iifl~~c~~~~sl~~li~~~~g~~~i~C~~~~~g~r~~~~~~~g~~~~~C 233 (471)
.|.++++.++..+.++.-.++ |..+ ......-+++..+.+++++...... ... +. . ... .-..+..+
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF-~~l~~~~a~~n~i~~~~~l~~~~P~--~~~-~~-----~--~~~-~~~~s~~~ 70 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSF-GILCASQAIANIIICLIFLFWVVPM--TLL-DI-----S--FLP-SSLNSIIF 70 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHh--hhc-cc-----c--cCc-hHHHHHHH
Confidence 356777777777766654332 3322 3444566677777777766554211 000 00 0 000 00012234
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhh--hhhhhHHHHHHHHHHHHHHHHHHHhcc--cCCCceeeEEE
Q psy8180 234 TFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEAL--HSLSTYYHIAAWGIPAVYAQLALALHH--VSGDELTGLCY 309 (471)
Q Consensus 234 ~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i--~~~~~~~h~~aw~ip~i~tii~l~~~~--v~~~~~~g~Cw 309 (471)
...+...|+.+...- +.+|++=+.+.......+++ .+.......+.|.++............ +..| -..+-|
T Consensus 71 g~~~~~~y~~~~~~~---~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~-~~~~~~ 146 (274)
T PF10328_consen 71 GFIGMFCYFIGPLSH---LLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYD-PETWSW 146 (274)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceec-cceeee
Confidence 455555554433222 56677666554321111111 122445678888887755555544321 1111 122556
Q ss_pred eeeCC-c----eee-ehhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8180 310 ISEPA-I----LVY-LIIPYAVLLLIGTVVGVFGAAALMKVRKEV 348 (471)
Q Consensus 310 I~~~~-~----~~~-~~~P~~i~l~ig~~fl~~~~~~i~~ir~~~ 348 (471)
.-+++ . .+. ......+...+..+.=++.++++.+.|+..
T Consensus 147 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~ 191 (274)
T PF10328_consen 147 SYPTDPPCGNYSWYFDFYKNFILVIISNILNIITFIKLRKFRKKI 191 (274)
T ss_pred ecCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 63332 2 111 122333333344444456666666555554
No 70
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=35.86 E-value=5e+02 Score=26.60 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=27.1
Q ss_pred HHHhHHHHHHHHHHHHHHH------hhcccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy8180 243 LSMSAGIWWVILTLAWYLS------AANKWSSEALHSLSTYYHIAAWGIPAVYAQLAL 294 (471)
Q Consensus 243 f~laa~~Ww~il~~~w~l~------~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l 294 (471)
+...+..||+...+-..+. ...+|+.+..++..+.+.-..|.+..+..+..+
T Consensus 88 l~~~a~~~~~~~~~~~l~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~ 145 (340)
T PF12794_consen 88 LLAMALFWLVFEFFRRLLRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIF 145 (340)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554444433321 245788887777666666666664433333333
No 71
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=34.13 E-value=4.7e+02 Score=25.80 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhh
Q psy8180 229 QSPTCTFVFLVLYYLSMSAGIWWVILTLA-WYLSAA 263 (471)
Q Consensus 229 ~~~~C~~~~~l~~~f~laa~~Ww~il~~~-w~l~~~ 263 (471)
++..|-....+...+...+ .|+..+++. -|...+
T Consensus 78 ~~~~C~~~y~~~~~~~~~s-~~~i~~sf~yRy~iL~ 112 (292)
T PF10317_consen 78 GPWFCFFCYHIMLHFSIHS-GWSIILSFYYRYYILR 112 (292)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 4567988888887775544 555666663 444433
No 72
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=33.95 E-value=7.7e+02 Score=28.20 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=29.5
Q ss_pred HhHHHHHHHH---HHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcc
Q psy8180 245 MSAGIWWVIL---TLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHH 298 (471)
Q Consensus 245 laa~~Ww~il---~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~ 298 (471)
.+.+.||+.. +...|+.-+. -.+|-...+..+++...|.+.++..++.+..+-
T Consensus 61 Navif~~~~~a~~g~~yy~vprl-~~~~l~s~~La~~~~~~~~~~i~~~~i~l~~G~ 116 (712)
T PRK14485 61 NAVIFAFVGNAIFAGVYYSTQRL-LKARMFSDLLSKIHFWGWQLIIVSAAITLPLGF 116 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566676533 4456654432 112211223456688888888887777776644
No 73
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=30.73 E-value=5.7e+02 Score=25.72 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=46.2
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccchhhhhhhhhH----HHHHHHHHHHHHHHHHHHhcccCC-Cce
Q psy8180 230 SPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTY----YHIAAWGIPAVYAQLALALHHVSG-DEL 304 (471)
Q Consensus 230 ~~~C~~~~~l~~~f~laa~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~----~h~~aw~ip~i~tii~l~~~~v~~-~~~ 304 (471)
...|.+.=....++.+....=-+.+++.=+++..+. +.-|+..+. .-++.|.+++..+.... .+.++ ++.
T Consensus 93 ~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~---~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~--~~~~~~~~~ 167 (324)
T PF10292_consen 93 TYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFS---KSYEKSGKWLGILLAFFQILISLLILYFVY--SDEDFPNER 167 (324)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHhcCCCccHHHHHHHHHHHHHHHHHHHHH--hhhhccCcc
Confidence 456877776666665554444455555544444321 122332222 22233444444333333 33333 344
Q ss_pred eeEEEeeeCCceeeehhHHHHHHHHHH
Q psy8180 305 TGLCYISEPAILVYLIIPYAVLLLIGT 331 (471)
Q Consensus 305 ~g~CwI~~~~~~~~~~~P~~i~l~ig~ 331 (471)
--.|.....+.......|..+.+++..
T Consensus 168 ~~yC~~~~~~~~~~~~~~~~~~~~~~i 194 (324)
T PF10292_consen 168 MYYCQASSSSSPYRVNIPFIVILVLQI 194 (324)
T ss_pred ceeeEEecCCCchhhHHHHHHHHHHHH
Confidence 446999766542334555555555443
No 74
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=29.50 E-value=4.7e+02 Score=26.15 Aligned_cols=79 Identities=8% Similarity=0.013 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHhhhhhhheee-ecchHHHH
Q psy8180 369 WSLYTMPAVGMLACLLYEWWQRPQEHALQALQAIDCTAPSCQIDPPRVSQITITLLRLFLFLVVGISSGMW-VWSSKTCR 447 (471)
Q Consensus 369 ~~ly~~~~~~~~~~~~Ye~~~~~~w~~~~~~~~~~~~~C~~~~~~~~~P~~~~~~l~~~~~l~~GI~~~~w-~~s~kt~~ 447 (471)
++.+.+|.+++..-++++..+.+..|+. -|... --++.-.+.+.+.-..+.|+.+..| +.+=+..-
T Consensus 109 ~i~~g~Pil~m~l~yivQ~~Rf~I~e~~---------GC~~~----~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~ 175 (283)
T PF02076_consen 109 LICFGIPILQMALHYIVQGHRFDIVEDV---------GCYPA----IYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFI 175 (283)
T ss_pred HHHHHHHHHHHHHHHHhcccceeEeccc---------CCccC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456679998888888888777777664 36542 2233444444445566667766655 45555555
Q ss_pred HHHHhHhccCCCC
Q psy8180 448 SWTKLFVSPGCSL 460 (471)
Q Consensus 448 ~W~~~~~~~~~~~ 460 (471)
.-|+-+++..+++
T Consensus 176 ~rr~~f~~~l~~s 188 (283)
T PF02076_consen 176 RRRKQFRDILSSS 188 (283)
T ss_pred HHHHHHHHHHhcC
Confidence 5566666666555
No 75
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.74 E-value=2.8e+02 Score=25.05 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHH
Q psy8180 145 KNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLI 194 (471)
Q Consensus 145 ~~~~~~~~~v~s~ls~~~tlf~ilTF~i~~~r~~yp~~~iifl~~c~~~~ 194 (471)
...-..+..++..+-++..+|..+-|+=++...||-|-.|+.+-+..+++
T Consensus 12 ~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~ 61 (149)
T PF11694_consen 12 QSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLI 61 (149)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHH
Confidence 34444555555556666666666666667778889887777665554444
No 76
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=21.53 E-value=4.7e+02 Score=25.36 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcccCCCce-eeEEEeeeCCceeeehhHHHH
Q psy8180 247 AGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDEL-TGLCYISEPAILVYLIIPYAV 325 (471)
Q Consensus 247 a~~Ww~il~~~w~l~~~~k~~~~~i~~~~~~~h~~aw~ip~i~tii~l~~~~v~~~~~-~g~CwI~~~~~~~~~~~P~~i 325 (471)
.+.||..+++.-|..+.+- .++ .+....+-+..+..++. +.|..-+++.+.. .|.=| ..+++.|..+
T Consensus 3 ~~~~~l~lTl~~y~~~~~l--~~r--~~~~~lnPvl~~~~~ii--~~L~~~~i~Y~~Y~~g~~~------l~~lLgPAtV 70 (226)
T TIGR00659 3 IIIVSLFLTLLVFFGAKKL--YQR--FKRPYLNPLLLTPLVLV--GILLLVGIPYESYMLGGGV------INDLLGPAVV 70 (226)
T ss_pred hhHHHHHHHHHHHHHHHHH--HHH--cCCccccHHHHHHHHHH--HHHHHhCCCHHHHHHhhHH------HHHhhHHHHH
Confidence 3556788888777765431 111 11233343333333222 2233333332221 11111 3567788877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy8180 326 LLLIGTVVGVFGAAALMKVRKEVRE 350 (471)
Q Consensus 326 ~l~ig~~fl~~~~~~i~~ir~~~~~ 350 (471)
.+.+ -+||-|+.+|+
T Consensus 71 ALAv----------PLY~~~~~lk~ 85 (226)
T TIGR00659 71 ALAI----------PLYKQLPQIKK 85 (226)
T ss_pred HHHH----------HHHHhHHHHHH
Confidence 7654 45787777764
Done!