RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8180
(471 letters)
>gnl|CDD|216557 pfam01534, Frizzled, Frizzled/Smoothened family membrane region.
This family contains the membrane spanning region of
frizzled and smoothened receptors. This membrane region
is predicted to contain seven transmembrane alpha
helices. Proteins related to Drosophila frizzled are
receptors for Wnt (mediating the beta-catenin signalling
pathway), but also the planar cell polarity (PCP)
pathway and the Wnt/calcium pathway. The predominantly
alpha-helical Cys-rich ligand-binding region (CRD) of
Frizzled is both necessary and sufficient for Wnt
binding. The smoothened receptor mediates hedgehog
signalling.
Length = 328
Score = 264 bits (677), Expect = 4e-85
Identities = 121/323 (37%), Positives = 192/323 (59%), Gaps = 10/323 (3%)
Query: 139 LYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVM 198
L+ ++K W+ S LCF STLFT+LTF +D RFRYPERP+I+++ CY ++S
Sbjct: 2 LFSRDEKRFARSWIGWWSALCFLSTLFTVLTFLIDWKRFRYPERPIIYLSACYLIVSLGY 61
Query: 199 IMKSSLGPNALTCVTPPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAW 258
++ LG ++ C + + + ++ +CT +FL++Y+ M++ +WWVILTL W
Sbjct: 62 LIGFVLGRESVACRKADGG--MRTVTQGSTENLSCTVLFLLVYFFGMASSVWWVILTLTW 119
Query: 259 YLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTGLCYIS--EPAIL 316
+L+A KW EA+ + S+Y+H+ AWG+PAV LAL+ V GDEL+G+C++ L
Sbjct: 120 FLAAGLKWGHEAIEAKSSYFHLVAWGLPAVLTITVLALNKVDGDELSGICFVGNLNLDAL 179
Query: 317 VYLII-PYAVLLLIGTVVGVFGAAALMKVRKEVREVGRNTIKLERLIARLTVFWSLYTMP 375
++ P + L+IGT + G +L ++R ++ G NT KLE+L+ R+ VF LYT+P
Sbjct: 180 RGFVLAPLCLYLVIGTSFLLAGFVSLFRIRSVIKTDGTNTSKLEKLMVRIGVFSILYTVP 239
Query: 376 AVGMLACLLYEW-----WQRPQEHALQALQAIDCTAPSCQIDPPRVSQITITLLRLFLFL 430
A+ ++AC YE+ W+R + +I C DP + + +L+ F+ L
Sbjct: 240 ALIVIACYFYEFANRDEWERSWRDCICCQYSIPCPYKDKSGDPEARPPLAVFMLKYFMSL 299
Query: 431 VVGISSGMWVWSSKTCRSWTKLF 453
VVGI+SG+WVWS KT SW +
Sbjct: 300 VVGITSGVWVWSKKTLESWRRFI 322
>gnl|CDD|143557 cd07448, CRD_FZ4, Cysteine-rich Wnt-binding domain of the frizzled
4 (Fz4) receptor. The cysteine-rich domain (CRD) is an
essential extracellular portion of the frizzled 4 (Fz4)
receptor, and is required for binding Wnt proteins,
which play fundamental roles in many aspects of early
development, such as cell and tissue polarity, neural
synapse formation, and the regulation of proliferation.
Fz proteins serve as Wnt receptors for multiple signal
transduction pathways, including both beta-catenin
dependent and -independent cellular signaling, as well
as the planar cell polarity pathway and the Ca(2+)
modulating signaling pathway. CRD containing Fzs have
been found in diverse species from amoebas to mammals.
10 different frizzled proteins are found in vertebrata.
Frizzled 4 (Fz4) activates the
Ca(2+)/calmodulin-dependent protein kinase II and
protein kinase C of the Wnt/Ca(2+) signaling pathway
during retinal angiogenesis. Mutations in Fz4 lead to
familial exudative vitreoretinopathy (FEVR), a
hereditary ocular disorder characterized by failure of
the peripheral retinal vascularization. In addition, the
interplay between Fz4 and norrin as a receptor-ligand
pair plays an important role in vascular development in
the retina and inner ear in a Wnt-independent manner.
Length = 126
Score = 99.1 bits (247), Expect = 6e-25
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 12 YRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALN 71
+LQ PLI CS ++FFLCSVY P+C+E V I CR LC VK CLP L
Sbjct: 36 LQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCRPLCLSVKKRCLPVLKEFG 95
Query: 72 FILPPLFNCSRFPVSEN-NGLCMQNP 96
F P NCS+FP N N +CM+ P
Sbjct: 96 FPWPEALNCSKFPPQNNHNHMCMEGP 121
>gnl|CDD|143549 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, also known as Fz
(frizzled) domain. CRD_FZ is an essential component of
a number of cell surface receptors, which are involved
in multiple signal transduction pathways, particularly
in modulating the activity of the Wnt proteins, which
play a fundamental role in the early development of
metazoans. CRD is also found in secreted frizzled
related proteins (SFRPs), which lack the transmembrane
segment found in the frizzled protein. The CRD domain is
also present in the alpha-1 chain of mouse type XVIII
collagen, in carboxypeptidase Z, several receptor
tyrosine kinases, and the mosaic transmembrane serine
protease corin. The CRD domain is well conserved in
metazoans - 10 frizzled proteins have been identified in
mammals, 4 in Drosophila and 3 in Caenorhabditis
elegans. CRD domains have also been identified in
multiple tandem copies in a Dictyostelium discoideum
protein. Very little is known about the mechanism by
which CRD domains interact with their ligands. The
domain contains 10 conserved cysteines.
Length = 119
Score = 97.2 bits (242), Expect = 3e-24
Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
L++ PL+NS C +RFFLCS+Y P C+ IP CR LCE+V+ C P + A F
Sbjct: 36 LESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLCEEVRDSCEPLMLAFGFP 95
Query: 74 LPPLFNCSRFPVSENNGLCMQNP 96
P +C RFP S GLC+ P
Sbjct: 96 WPEPLDCDRFPDSNEEGLCISPP 118
>gnl|CDD|143566 cd07457, CRD_FZ9_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 9. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors,
and similar proteins. This domain is required for
binding Wnt proteins, which play fundamental roles in
many aspects of early development, such as cell and
tissue polarity, neural synapse formation, and the
regulation of proliferation. Fz proteins serve as Wnt
receptors for multiple signal transduction pathways,
including both beta-catenin dependent and -independent
cellular signaling, as well as the planar cell polarity
pathway and Ca(2+) modulating signaling pathway. The CRD
domain is well conserved in metazoans - 10 frizzled
proteins have been identified in mammals, 4 in
Drosophila and 3 in Caenorhabditis elegans. Very little
is known about the mechanism by which CRD domains
interact with their ligands. The domain contains 10
conserved cysteines.
Length = 121
Score = 87.5 bits (217), Expect = 7e-21
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 13 RLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNF 72
+ PL+ C+ H+RFFLCS+YAP+C+E V IP+CR +CE + C P + +F
Sbjct: 36 SIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACRSMCEQARDKCSPIMEQFSF 95
Query: 73 ILPPLFNCSRFPV-SENNGLCMQNP 96
P +C R P ++ LCM+ P
Sbjct: 96 SWPDSLDCDRLPRKNDPKDLCMEAP 120
>gnl|CDD|143572 cd07463, CRD_FZ9, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 9 (Fz9) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 9 (Fz9) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz9 may play a signaling role in lymphoid
development and maturation, particularly at points where
B cells undergo self-renewal prior to further
differentiation.
Length = 127
Score = 87.4 bits (216), Expect = 1e-20
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 13 RLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNF 72
+L PL+ C H+RFFLCS+YAP+C++ V +IP+CR +CE + C P + NF
Sbjct: 38 KLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACRPMCEQARQKCSPIMEQFNF 97
Query: 73 ILPPLFNCSRFPVSEN-NGLCMQNPINERK 101
P +CSR P + N LCM+ P N
Sbjct: 98 GWPESLDCSRLPTRNDPNALCMEAPENATA 127
>gnl|CDD|143571 cd07462, CRD_FZ10, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 10 (Fz10) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 10 (Fz10) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. The cellular functon of Fz10 is unknown.
Length = 127
Score = 85.5 bits (211), Expect = 5e-20
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 13 RLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNF 72
+L PL+ C H++FFLCS+YAP+C+E V IP+CR +CE + C P + NF
Sbjct: 38 QLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACRVMCEQARLKCSPIMEQFNF 97
Query: 73 ILPPLFNCSRFPVSEN-NGLCMQNPIN 98
P +CS+ P + N LCM+ P N
Sbjct: 98 KWPDSLDCSKLPNKNDPNYLCMEAPNN 124
>gnl|CDD|214498 smart00063, FRI, Frizzled. Drosophila melanogaster frizzled
mediates signalling that polarises a precursor cell
along the anteroposterior axis. Homologues of the
N-terminal region of frizzled exist either as
transmembrane or secreted molecules. Frizzled homologues
are reported to be receptors for the Wnt growth factors.
(Not yet in MEDLINE: the FRI domain occurs in several
receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr.
Biol. 8 R405-R406 (1998); Masiakowski, P. and
Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Length = 113
Score = 82.0 bits (203), Expect = 5e-19
Identities = 36/80 (45%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
L+ PL+N CS +RFFLCSVYAP+C+E + I CR LCE + C P + F
Sbjct: 35 LEQFHPLLNVQCSPDLRFFLCSVYAPICTED-LRPILPCRSLCEAAREGCEPLMEKFGFP 93
Query: 74 LPPLFNCSRFPVSENNGLCM 93
P C RFPV LCM
Sbjct: 94 WPEFLRCDRFPV--QEELCM 111
>gnl|CDD|201766 pfam01392, Fz, Fz domain. Also known as the CRD (cysteine rich
domain), the C6 box in MuSK receptor. This domain of
unknown function has been independently identified by
several groups. The domain contains 10 conserved
cysteines.
Length = 108
Score = 80.5 bits (199), Expect = 2e-18
Identities = 33/69 (47%), Positives = 42/69 (60%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+N CS ++FFLCS+YAP+C+E + IP CR LCE VK C P + F P L
Sbjct: 40 PLVNVKCSPALQFFLCSLYAPVCTEGLRTPIPPCRSLCEAVKEGCEPVMETFGFGWPELL 99
Query: 79 NCSRFPVSE 87
CS+ P E
Sbjct: 100 ECSKLPSPE 108
>gnl|CDD|143565 cd07456, CRD_FZ5_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 5. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and
similar proteins. This domain is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. The CRD domain
is well conserved in metazoans - 10 frizzled proteins
have been identified in mammals, 4 in Drosophila and 3
in Caenorhabditis elegans. Very little is known about
the mechanism by which CRD domains interact with their
ligands. The domain contains 10 conserved cysteines.
Length = 120
Score = 75.9 bits (187), Expect = 9e-17
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 15 QALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFIL 74
PL+ CS ++FFLCS+Y P+C E +P CR +CE + C P + F
Sbjct: 37 HQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCRSVCERARDGCAPIMRQYGFAW 96
Query: 75 PPLFNCSRFP-VSENNGLCMQNPI 97
P +C P + + LCM
Sbjct: 97 PERMSCDALPEGGDPDNLCMDRNN 120
>gnl|CDD|143563 cd07454, CRD_LIN_17, Cysteine-rich domain (CRD) of LIN_17. A
cysteine-rich domain (CRD) is an essential component of
a number of cell surface receptors, which are involved
in multiple signal transduction pathways, particularly
in modulating the activity of the Wnt proteins, which
play a fundamental role in the early development of
metazoans. CRD is also found in secreted frizzled
related proteins (SFRPs), which lack the transmembrane
segment found in the frizzled protein. The CRD domain is
also present in the alpha-1 chain of mouse type XVIII
collagen, in carboxypeptidase Z, several receptor
tyrosine kinases, and the mosaic transmembrane serine
protease corin. The CRD domain is well conserved in
metazoans - 10 frizzled proteins have been identified in
mammals, 4 in Drosophila and 3 in Caenorhabditis
elegans. CRD domains have also been identified in
multiple tandem copies in a Dictyostelium discoideum
protein. Very little is known about the mechanism by
which CRD domains interact with their ligands. The
domain contains 10 conserved cysteines. The protein
lin-17 is involved in cell type specification during
Caenorhabditis elegans vulval development.
Length = 124
Score = 73.3 bits (179), Expect = 9e-16
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+ + C HI FF+CSV+AP+C + A+ SC+ +CE VKADC L P
Sbjct: 44 PLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCKSVCEQVKADCFSILEEFGIGWPEPL 103
Query: 79 NCSRFPVSENNGLCMQ 94
NC++FP LCM+
Sbjct: 104 NCAQFPDPPE--LCMK 117
>gnl|CDD|143567 cd07458, CRD_FZ1_like, Cysteine-rich Wnt-binding domain (CRD) of
receptors similar to frizzled 1. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7
(Fz7) receptors, and similar proteins. This domain is
required for binding Wnt proteins, which play
fundamental roles in many aspects of early development,
such as cell and tissue polarity, neural synapse
formation, and the regulation of proliferation. Fz
proteins serve as Wnt receptors for multiple signal
transduction pathways, including both beta-catenin
dependent and -independent cellular signaling, as well
as the planar cell polarity pathway and Ca(2+)
modulating signaling pathway. The CRD domain is well
conserved in metazoans - 10 frizzled proteins have been
identified in mammals, 4 in Drosophila and 3 in
Caenorhabditis elegans. Very little is known about the
mechanism by which CRD domains interact with their
ligands. The domain contains 10 conserved cysteines.
Length = 119
Score = 71.7 bits (176), Expect = 3e-15
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCS--EHVIGAIPSCRGLCEDVKADCLPTLTALNFILPP 76
PL+ CS ++FFLCSVYAP+C+ E IP CR LCE + C + F P
Sbjct: 42 PLVKVQCSPDLKFFLCSVYAPVCTVLER---PIPPCRSLCESARQGCEALMNKFGFQWPE 98
Query: 77 LFNCSRFPVSENNGLC 92
+C +FPV LC
Sbjct: 99 SLDCEKFPVHGAGDLC 114
>gnl|CDD|143555 cd07446, CRD_SFRP2, Cysteine-rich domain of the secreted
frizzled-related protein 2 (SFRP2), a regulator of Wnt
activity. The cysteine-rich-domain (CRD) is an
essential part of the secreted frizzled related protein
2 (SFRP2), which regulates the activity of Wnt
proteins, key players in a number of fundamental
cellular processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to CRD domains of frizzled (Fz)
proteins, thereby preventing Wnt proteins from binding
to these receptors. SFRPs and Fz proteins both contain
CRD domains, but SFRPs lack the seven-pass transmembrane
domain which is an integral part of Fzs. As a Wnt
antagonist, SFRP2 regulates Nkx2.2 expression in the
ventral spinal cord and anteroposterior axis elongation.
SFRP2 also has a Wnt-independent function as an enhancer
of procollagen cleavage by the TLD proteinases. SFRP2
binds both procollagen and TLD, thus facilitating the
enzymatic reaction by bringing together the proteinase
and its substrate.
Length = 128
Score = 69.9 bits (171), Expect = 2e-14
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 16 ALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILP 75
+ +PL+ C + FLCS++AP+C + + AI CR LCE VK C P ++A F P
Sbjct: 43 SWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPCRSLCEAVKDGCAPVMSAFGFPWP 102
Query: 76 PLFNCSRFPVSENNGLCM 93
+ +C+RFP +N LC+
Sbjct: 103 DMLDCTRFP--LDNDLCI 118
>gnl|CDD|143570 cd07461, CRD_FZ8, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 8 (Fz8) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 8 (Fz8) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin
signaling pathways controlling the transcriptional
activation of target genes Siamois and Xnr3 in the
animal caps of late blastula.
Length = 125
Score = 66.9 bits (163), Expect = 1e-13
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+ CS ++FFLCS+Y P+C E +P CR +CE KA C P + F P
Sbjct: 44 PLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFPWPDRM 103
Query: 79 NCSRFPVSEN-NGLCM 93
C P N + LCM
Sbjct: 104 RCDLLPEQGNPDTLCM 119
>gnl|CDD|143569 cd07460, CRD_FZ5, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 5 (Fz5) receptor.proteins. The cysteine-rich
domain (CRD) is an essential extracellular portion of
the frizzled 5 (Fz5) receptor, and is required for
binding Wnt proteins, which play fundamental roles in
many aspects of early development, such as cell and
tissue polarity, neural synapse formation, and the
regulation of proliferation. Fz proteins serve as Wnt
receptors for multiple signal transduction pathways,
including both beta-catenin dependent and -independent
cellular signaling, as well as the planar cell polarity
pathway and Ca(2+) modulating signaling pathway. CRD
containing Fzs have been found in diverse species from
amoebas to mammals. 10 different frizzled proteins are
found in vertebrata. Fz5 plays critical regulating roles
in the yolk sac and placental angiogenesis, in the
maturation of the Paneth cell phenotype, in governing
the neural potential of progenitors in the developing
retina, and in neuronal survival in the parafascicular
nucleus.
Length = 127
Score = 67.0 bits (163), Expect = 2e-13
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+ CS +RFFLCS+Y P+C +P CR +CE KA C P + F P
Sbjct: 44 PLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCRSVCERAKAGCSPLMRQYGFAWPERM 103
Query: 79 NCSRFPV-SENNGLCM 93
NC R PV + LCM
Sbjct: 104 NCDRLPVLGDPETLCM 119
>gnl|CDD|143575 cd07466, CRD_FZ7, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 7 (Fz7) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 7 (Fz7) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin
signaling pathways controlling the transcriptional
activation of target genes Siamois and Xnr3 in the
animal caps of late blastula.
Length = 125
Score = 64.3 bits (156), Expect = 1e-12
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+ CS ++FFLCS+YAP+C+ + AIP CR LCE + C + F P
Sbjct: 44 PLVKVQCSPELKFFLCSMYAPVCTV-LEQAIPPCRSLCERARQGCEALMNKFGFQWPERL 102
Query: 79 NCSRFPVSENNGLCM 93
C FPV +C+
Sbjct: 103 RCENFPVHGAGEICV 117
>gnl|CDD|143574 cd07465, CRD_FZ1, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 1 (Fz1) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 1 (Fz1) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata.
Length = 127
Score = 64.3 bits (156), Expect = 1e-12
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+ CS ++FFLCS+YAP+C+ + A+P CR LCE + C + F P
Sbjct: 44 PLVKVQCSAELKFFLCSMYAPVCTV-LEQALPPCRSLCERARQGCEALMNKFGFQWPDTL 102
Query: 79 NCSRFPVSENNGLCMQNPINER 100
C +FPV LC+ +E
Sbjct: 103 RCEKFPVHGAGELCVGQNTSES 124
>gnl|CDD|143562 cd07453, CRD_crescent, Cysteine-rich domain of the crescent
protein. The cysteine-rich domain (CRD) is an essential
part of the crescent protein, a member of the secreted
frizzled-related protein (SFRP) family, which regulates
convergent extension movements (CEMs) during
gastrulation and neurulation. Xenopus laevis crescent
efficiently forms inhibitory complexes with Wnt5a and
Wnt11, but this effect is cancelled in the presence of
another member of the SFRP family, Frzb1. A potential
role for Crescent in head formation is to regulate a
non-canonical Wnt pathway positively in the adjacent
posterior mesoderm, and negatively in the overlying
anterior neuroectoderm.
Length = 135
Score = 63.8 bits (155), Expect = 3e-12
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 18 MPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPL 77
+PL+ C R FLCS++AP+C + I CR LCE V++ C P + + P +
Sbjct: 43 LPLLARECHPDARIFLCSLFAPICWDRPIYP---CRSLCEAVRSSCAPLMACYGYPWPEI 99
Query: 78 FNCSRFPVSENNGLCMQNPINERKEKYTAPPKP 110
+C +FP ++ LC+ + P+
Sbjct: 100 LHCDKFP--VDHDLCISPQFIDTLSPERVKPRA 130
>gnl|CDD|143573 cd07464, CRD_FZ2, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 2 (Fz2) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 2 (Fz2) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz2 is involved in the Wnt/beta-catenin
signaling pathway and in the activation of protein
kinase C and calcium/calmodulin-dependent protein kinase
(CaM kinase).
Length = 127
Score = 61.3 bits (148), Expect = 2e-11
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLF 78
PL+ CS +RFFLCS+YAP+C+ + AIP CR +CE + C + F P
Sbjct: 44 PLVKVQCSLELRFFLCSMYAPVCTV-LEQAIPPCRSICERARQGCEALMNKFGFQWPERL 102
Query: 79 NCSRFPVSENNGLCM 93
C FP +C+
Sbjct: 103 RCENFPRHGAEQICV 117
>gnl|CDD|143553 cd07444, CRD_SFRP5, Cysteine-rich domain of the secreted
frizzled-related protein 5 (SFRP5), a regulator of Wnt
activity. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related Protein
5 (SFRP5), which regulates the activity of Wnt proteins,
key players in a number of fundamental cellular
processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to the CRD domains of frizzled (Fz)
proteins, thereby preventing Wnt proteins from binding
to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
Length = 127
Score = 60.7 bits (147), Expect = 2e-11
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 18 MPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPL 77
+PL+ C + FLCS++AP+C + I CR LCE V+ C P + + F P +
Sbjct: 47 VPLLAKRCHADTQVFLCSLFAPVCLDR---PIYPCRSLCEAVRDSCAPVMESYGFPWPEM 103
Query: 78 FNCSRFPVSENNGLCM 93
+C +FP+ +N LC+
Sbjct: 104 LHCHKFPL--DNDLCI 117
>gnl|CDD|143558 cd07449, CRD_FZ3, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 3 (Fz3) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 3 (Fz3) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Fz3 plays a vital role in the
anterior-posterior guidance of commissural axons.
Knockout mice without Fz3 show defects in fiber tracts
in the rostral CNS.
Length = 127
Score = 58.9 bits (142), Expect = 1e-10
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
++ P++N CSR R FLC++YAP+C E+ +P CR LC+ ++C +
Sbjct: 39 MEPFHPMVNLECSRDFRPFLCALYAPVCMEYGRVTLP-CRRLCQRAYSECSKLMEMFGVP 97
Query: 74 LPPLFNCSRFP 84
P CSRFP
Sbjct: 98 WPEDMECSRFP 108
>gnl|CDD|143561 cd07452, CRD_sizzled, Cysteine-rich domain of the sizzled protein.
The cysteine-rich domain (CRD) is an essential part of
the sizzled protein, which regulates bone morphogenetic
protein (Bmp) signaling by stabilizing chordin, and
plays a critical role in the patterning of vertebrate
and invertebrate embryos. Sizzled also functions in the
ventral region as a Wnt inhibitor and modulates
canonical Wnt signaling. Sizzled proteins belong to the
secreted frizzled-related protein family (SFRP), and
have be identified in the genomes of birds, fishes and
frogs, but not mammals.
Length = 141
Score = 59.1 bits (143), Expect = 1e-10
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 20 LINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFN 79
L+++ C H R FLCS++AP+C + I CR +C V+ C P L P +
Sbjct: 51 LLHTGCHPHARTFLCSLFAPVCLDTFI---QPCRSMCVAVRDSCAPVLACHGHSWPESLD 107
Query: 80 CSRFPVSENNGLCMQNPINERKEKYTAPPKPKPLTC 115
C RFP E +C+ + E + Y PKP +C
Sbjct: 108 CDRFPAGE--DMCLASLSKEYQYFYKEFPKPACQSC 141
>gnl|CDD|143559 cd07450, CRD_FZ6, Cysteine-rich Wnt-binding domain (CRD) of the
frizzled 6 (Fz6) receptor. The cysteine-rich domain
(CRD) is an essential extracellular portion of the
frizzled 6 (Fz6) receptor, and is required for binding
Wnt proteins, which play fundamental roles in many
aspects of early development, such as cell and tissue
polarity, neural synapse formation, and the regulation
of proliferation. Fz proteins serve as Wnt receptors for
multiple signal transduction pathways, including both
beta-catenin dependent and -independent cellular
signaling, as well as the planar cell polarity pathway
and Ca(2+) modulating signaling pathway. CRD containing
Fzs have been found in diverse species from amoebas to
mammals. 10 different frizzled proteins are found in
vertebrata. Frizzled 6 (Fz6) is expressed in the skin
and hair follicles and controls hair patterning in
mammals using a Fz-dependent tissue polarity system,
which is similar to the one that patterns the Drosophila
cuticle.
Length = 127
Score = 57.5 bits (139), Expect = 4e-10
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 13 RLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNF 72
++ +PL N CS ++ FLC + P C+E I + CR LCE V +DC +
Sbjct: 38 EMEPFLPLANLRCSPNVHTFLCQAFVPTCTEQ-IHVVRPCRELCEKVYSDCKKLIDTFGI 96
Query: 73 ILPPLFNCSRFP 84
P C R
Sbjct: 97 SWPEELECDRLQ 108
>gnl|CDD|143552 cd07443, CRD_SFRP1, Cysteine-rich domain of the secreted
frizzled-related protein 1 (SFRP1), a regulator of Wnt
activity. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related protein
1 (SFRP1), which regulates the activity of Wnt proteins,
key players in a number of fundamental cellular
processes such as embryogenesis and postnatal
development. SFRPs antagonize the activation of Wnt
signaling by binding to the CRDs domains of frizzled
(Fz) proteins, thereby preventing Wnt proteins from
binding to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
SFRP1 is expressed in many tissues and is involved in
the regulation of Wnt signaling in osteoblasts, leading
to enhanced trabecular bone formation in adults; it has
also been shown to control the growth of retinal
ganglion cell axons and the elongation of the
antero-posterior axis.
Length = 124
Score = 56.4 bits (136), Expect = 7e-10
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 12 YRLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALN 71
+ + +PL+N NC + + FLCS++AP+C + + CR LCE V+ C P +
Sbjct: 41 QQASSWVPLLNKNCHKGTQVFLCSLFAPVCLDR---PVYPCRWLCEAVRDSCEPVMQFFG 97
Query: 72 FILPPLFNCSRFPVSE 87
F P + C +FP E
Sbjct: 98 FYWPEMLKCDKFPEGE 113
>gnl|CDD|143551 cd07442, CRD_SFRP4, Cysteine-rich domain of the secreted
frizzled-related protein 4 (SFRP4), a Wnt antagonist.
The cysteine-rich domain (CRD) is an essential part of
the secreted frizzled-related Protein 4 (SFRP4), which
regulates the activity of Wnt proteins, key players in a
number of fundamental cellular processes such as
embryogenesis and postnatal development. SFRPs
antagonize the activation of Wnt signaling by binding to
the CRDs domains of frizzled (Fz) proteins, thereby
preventing Wnt proteins from binding to these receptors.
SFRPs are also known to have functions unrelated to Wnt,
as enhancers of procollagen cleavage by the TLD
proteinases. SFRPs and Fz proteins both contain CRD
domains, but SFRPs lack the seven-pass transmembrane
domain which is an integral part of Fzs.
Length = 127
Score = 53.5 bits (128), Expect = 8e-09
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 9 NRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCS-EHVIGAIPSCRGLCEDVKADCLPTL 67
N + ++ L+++ CS + FFLC++YAP+C+ E + I CR +C+ + C P +
Sbjct: 34 NAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCRSVCQRARDGCEPIM 93
Query: 68 TALNFILPPLFNCSRFPVSENNGLCM 93
N P C PV + G+C+
Sbjct: 94 RRYNHSWPESLACDDLPVYD-RGVCI 118
>gnl|CDD|143556 cd07447, CRD_Carboxypeptidase_Z, Cysteine-rich domain of
carboxypeptidase Z, a member of the carboxypeptidase E
family. The cysteine-rich-domain (CRD) is an essential
part of carboxypeptidase Z, a member of the
carboxypeptidase E family of metallocarboxypeptidases.
This is a group of Zn-dependent enzymes implicated in
the intra- and extracellular processing of proteins.
Carboxypeptidase Z removes C-terminal basic amino acid
residues from its substrates, particularly arginine. The
CRD acts as a ligand-binding domain for Wnts involved in
developmental processes. CPZ binds and may process
Wnt-4, CPZ has also been found to enhance the induction
of the homeobox gene Cdx1. During vertebrate
embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt
reporter gene essential for patterning of somites and
limb development.
Length = 128
Score = 52.8 bits (127), Expect = 1e-08
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
L L L+ C+ IR CSV AP C + I CR CE ++ C A+
Sbjct: 43 LSVLHGLLGGECNPDIRLLGCSVLAPRCENDKV--IKPCRSTCEALRKRCSHAFDAIQMA 100
Query: 74 LPPLFNCSRFPVSENNG 90
P +C RF E G
Sbjct: 101 WPYFLDCDRFFAGEQEG 117
>gnl|CDD|143579 cd07888, CRD_corin_2, One of two cysteine-rich domains of the corin
protein, a type II transmembrane serine protease . The
cysteine-rich domain (CRD) is an essential component of
corin, a type II transmembrane serine protease which
functions as the convertase of the pro-atrial
natriuretic peptide (pro-ANP) in the heart. Corin
contains two CRDs in its extracellular region, which
play an important role in recognition of the
physiological substrate, pro-ANP. This model
characterizes the second (C-terminal) CRD.
Length = 122
Score = 52.7 bits (126), Expect = 1e-08
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 16 ALMP-LINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFIL 74
+L P L+ +NC +++ FF C++ P C IP CR LC + K C L +
Sbjct: 39 SLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCRSLCRNSKERCESVLGIVGLQW 98
Query: 75 PPLFNCSRFP 84
P +C++FP
Sbjct: 99 PEDTDCAQFP 108
>gnl|CDD|143550 cd07441, CRD_SFRP3, Cysteine-rich domain of the secreted
frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt
antagonist. The cysteine-rich domain (CRD) is an
essential part of the secreted frizzled-related protein
3 (SFRP3, alias FRZB), which plays important roles in
embryogenesis and postnatal development as an antagonist
of Wnt proteins, key players in a number of fundamental
cellular processes. SFRPs antagonize the activation of
Wnt signaling by binding to the CRD domains of frizzled
proteins (Fz), thereby preventing Wnt proteins from
binding to these receptors. SFRPs are also known to have
functions unrelated to Wnt, as enhancers of procollagen
cleavage by the TLD proteinases. SFRPs and Fz proteins
both contain CRD domains, but SFRPs lack the seven-pass
transmembrane domain which is an integral part of Fzs.
SFRP3 regulates Wnt signaling activity in bone
development and homeostasis. It is also involved in the
control of planar cell polarity.
Length = 126
Score = 50.4 bits (120), Expect = 1e-07
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 9 NRMYRLQALMPLINSNCSRHIRFFLCSVYAPLCS---EHVIGAIPSCRGLCEDVKADCLP 65
N + ++ L+ + CS + FFLC++YAP+C+ +H I C+ +CE +A C P
Sbjct: 33 NAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQH--EPIKPCKSVCERARAGCEP 90
Query: 66 TLTALNFILPPLFNCSRFPVSENNGLCM 93
L P C PV + G+C+
Sbjct: 91 VLIRYRHTWPESLACEELPVYD-RGVCI 117
>gnl|CDD|143554 cd07445, CRD_corin_1, One of two cysteine-rich domains of the corin
protein, a type II transmembrane serine protease . The
cysteine-rich domain (CRD) is an essential component of
corin, a type II transmembrane serine protease which
functions as the convertase of the pro-atrial
natriuretic peptide (pro-ANP) in the heart. Corin
contains two CRDs in its extracellular region, which
play an important role in recognition of the
physiological substrate, pro-ANP. This model
characterizes the first (N-terminal) CRD.
Length = 130
Score = 44.5 bits (105), Expect = 1e-05
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 24 NCSRHIRFFLCSVYAPLCSEH---VIGAIPSCRGLCEDVKADCLPTLTALNFILPPLFNC 80
+C +HI F CS+ P C G +P CR CE K C P L +N P C
Sbjct: 48 SCYQHIMLFGCSLALPECISDGDDRHGLLP-CRSFCEAAKEGCEPVLGMVNASWPDFLRC 106
Query: 81 SRF 83
S+F
Sbjct: 107 SQF 109
>gnl|CDD|143568 cd07459, CRD_TK_ROR_like, Cysteine-rich domain of tyrosine
kinase-like orphan receptors. The cysteine-rich domain
(CRD) is an essential part of the tyrosine kinase-like
orphan receptor (Ror) proteins, a conserved family of
tyrosine kinases that function in various processes,
including neuronal and skeletal development, cell
polarity, and cell movement. Ror proteins are receptors
of Wnt proteins, which are key players in a number of
fundamental cellular processes in embryogenesis and
postnatal development. In different cellular contexts,
Ror proteins can either activate or repress
transcription of Wnt target genes, and can modulate Wnt
signaling by sequestering Wnt ligands. In addition, a
number of Wnt-independent functions have been proposed
for both Ror1 and Ror2.
Length = 135
Score = 32.0 bits (73), Expect = 0.26
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 19 PLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPS--CRGLCEDVKAD-CLPTLTALN---F 72
++ C ++ LC PLC E P CR CE ++ D C
Sbjct: 46 SDVSPKCQQYALPSLCYYAFPLCDEGSSTPKPRRICRDECELLENDLCKKEYAIAKRHPL 105
Query: 73 ILPP--LFNCSRFP 84
I L +CS P
Sbjct: 106 IGHQLLLPDCSSLP 119
>gnl|CDD|143564 cd07455, CRD_Collagen_XVIII, Cysteine-rich domain of the variant 3
of collagen XVIII (V3C18 ). The cysteine-rich domain
(CRD) is an essential part of the variant 3 of collagen
XVIII (V3C18), which regulates major cellular functions
such as the differential epithelial morphogenesis of
early lung and kidney development. V3C18 is a 170 kD
protein, which is proteolotically processed into the
CRD-containing 50 kD glucoprotein precursor that binds
Wnt3a through its CRD domain and suppresses the
Wnt3a-induced stabilization of beta catenin. Full-length
V3C18 is unable to inhibit Wnt signaling.
Length = 123
Score = 31.3 bits (71), Expect = 0.39
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
L L+ S C + +F C + P C P CR CE ++ C L
Sbjct: 41 LAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPCRQFCEVLQDSCWNLLEGGRLP 100
Query: 74 LPPLFNCSRFPVSENNGLC 92
+ C+ P + +G C
Sbjct: 101 V----ACASLP-EQEDGYC 114
>gnl|CDD|147574 pfam05462, Dicty_CAR, Slime mold cyclic AMP receptor. This family
consists of cyclic AMP receptor (CAR) proteins from
slime molds. CAR proteins are responsible for
controlling development in Dictyostelium discoideum.
Length = 305
Score = 31.3 bits (71), Expect = 1.1
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 233 CTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQL 292
C +V+ Y S++ +W + L + Y + YY + WG+P + +
Sbjct: 76 CYLYAIVITYGSLACWLWTLCLAFSIYNLIVKREPEP--EKFEKYYFLVCWGLPLISTII 133
Query: 293 ALALHHVSGDELTGLCYISEPAILVYLIIPYAVLLLIGTVVGVFGAAALM 342
L+ + + + + C+I E + Y L G ++G +A++
Sbjct: 134 MLSKNTI--EPVGNWCWIGEQ------YVGYRFGLFYGPFFIIWGTSAIL 175
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 29.9 bits (68), Expect = 2.9
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 284 GIPAVYAQLA---------LALHHVSGDELTGLCYISEPAILV----YLIIPYA-VLLLI 329
G+P +++ LAL V G ELT A YL A LL++
Sbjct: 77 GLPGLHSTYLLFDGRTGEPLAL--VDGTELT---ARRTAAASALAASYLARKDASRLLVV 131
Query: 330 GT-VVGVFGAAALMKVR--KEVREVGRNTIKLERLIARLT 366
GT + A A VR K+VR GR+ K E L A L
Sbjct: 132 GTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELR 171
>gnl|CDD|215647 pfam00002, 7tm_2, 7 transmembrane receptor (Secretin family). This
family is known as Family B, the secretin-receptor
family or family 2 of the G-protein-coupled receptors
(GCPRs).They have been described in many animal species,
but not in plants, fungi or prokaryotes. Three distinct
sub-families are recognised. Subfamily B1 contains
classical hormone receptors, such as receptors for
secretin and glucagon, that are all involved in
cAMP-mediated signalling pathways. Subfamily B2 contains
receptors with long extracellular N-termini, such as the
leukocyte cell-surface antigen CD97 ;
calcium-independent receptors for latrotoxin, and
brain-specific angiogenesis inhibitors amongst others.
Subfamily B3 includes Methuselah and other Drosophila
proteins. Other than the typical seven-transmembrane
region, characteristic structural features include an
amino-terminal extracellular domain involved in ligand
binding, and an intracellular loop (IC3) required for
specific G-protein coupling.
Length = 239
Score = 29.5 bits (67), Expect = 3.5
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
Query: 233 CTFVFLVLYYLSMSAGIWWVILTLAWYLSAA--NKWSSEALHSLSTYYHIAAWGIPAVYA 290
C V + L+Y ++ W +L YL + SE + +Y + WG+PAV
Sbjct: 71 CKVVAVFLHYFFLANFFW--MLVEGLYLYTLLVEVFFSERKYLW--WYLLIGWGVPAVVV 126
Query: 291 QLALALHHVSGDELTGLCYISEPAILVYLII-PYAVLLLIGTVVGVFGAAALMKVRKEVR 349
+ + G+ C++S ++ P +++L+ + + L++ +
Sbjct: 127 GIWAIVRKGYGNP---GCWLSNNGGFWWIFKGPVLLVILVNFIFFINILRILVQ-KLRSP 182
Query: 350 EVGRNTIKLERL 361
++G +RL
Sbjct: 183 DMGETDQYRKRL 194
>gnl|CDD|178121 PLN02505, PLN02505, omega-6 fatty acid desaturase.
Length = 381
Score = 29.3 bits (66), Expect = 4.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 236 VFLVLYYLSMSAGIWWVILTLAWYLSAANKW 266
V LY L+ + G+ WV+ L N +
Sbjct: 235 VSFGLYRLAAAKGLAWVLCVYGVPLLIVNAF 265
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 29.4 bits (67), Expect = 4.4
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 172 VDGSRFRYPER-------PVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPSPDAV---- 220
V G+R RYP + PVI + I + LG L +
Sbjct: 264 VRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLGIPILGTYDSSGASPISGLA 323
Query: 221 -----PYIAVDALQSPTCTFVFLVLY-YLSMSAGIWWVILT 255
P+ D +Q P ++ + LS+ I+WV T
Sbjct: 324 YYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETT 364
>gnl|CDD|221972 pfam13194, DUF4010, Domain of unknown function (DUF4010). This is
a family of putative membrane proteins found in archaea
and bacteria. It is sometimes found C terminal to
pfam02308.
Length = 211
Score = 29.0 bits (66), Expect = 4.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 307 LCYISEPAILVYLIIPYAVLLLIGTVVGVF 336
+ I PA+L L +P + L+G + +
Sbjct: 74 IVAIVNPALLPALALPLLAMALVGLLAALL 103
>gnl|CDD|187773 cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-C subtype; also known as Csd1 family.
Length = 574
Score = 29.3 bits (66), Expect = 4.9
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 138 ALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVI--FIAFCYNLI 194
A+ D VE A + L F VDG+ ER + F A
Sbjct: 121 AVLDFLDSPEVEDLKAAPALATEIDLPGANLAFRVDGAPGIVHEREAVQAFWARHLAES 179
>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401). This
family of proteins is found in bacteria. Proteins in
this family are typically between 357 and 735 amino
acids in length. The family is found in association with
pfam09925. There is a single completely conserved
residue K that may be functionally important.
Length = 321
Score = 28.7 bits (65), Expect = 6.6
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 26/163 (15%)
Query: 232 TCTFVFLVLYYLSMSAGIWW----------VILTLAWYLSAANKWSSEALHSLSTYYHIA 281
V +L L+ +++ L +L
Sbjct: 114 AAAGVLALLGLLAELLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHAL--LEPL 171
Query: 282 AWGIPAVYAQLALALHHVSGDELTGLCYISEPAILVYLIIPYAVLLLIGTVVGVFGAAAL 341
A+G+ + LAL L + G + A+LLL+ V ++
Sbjct: 172 AYGLLL--SLLALLLVLSGNSLILGAPFFLAS-------WLKALLLLLLLVGLALLLISI 222
Query: 342 MKVRKEVREVGRNTIKLERLIARLTVFWSLYTMPAVGMLACLL 384
+ R++ T KL+ ++ + +L ++PA G+ A LL
Sbjct: 223 LWRRRQPL-----TSKLQAVVLLALLLLALLSLPAPGLGAALL 260
>gnl|CDD|224880 COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy
production and conversion].
Length = 227
Score = 28.6 bits (64), Expect = 6.6
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 238 LVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGI 285
LY G+ + + + +W+ + ++ + W I
Sbjct: 150 FALYGEHYHYGLGAPLRYVFEWF----EWTGGGSADVHFWHRLGMWLI 193
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.459
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,480,531
Number of extensions: 2371754
Number of successful extensions: 3534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3499
Number of HSP's successfully gapped: 99
Length of query: 471
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 371
Effective length of database: 6,502,202
Effective search space: 2412316942
Effective search space used: 2412316942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)