RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8180
(471 letters)
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 89.0 bits (220), Expect = 2e-21
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
+ PL+ CS ++FFLCS+Y P+C E +P CR +CE KA C P + F
Sbjct: 44 VHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFA 103
Query: 74 LPPLFNCSRFPV-SENNGLCMQNPINE 99
P C R P + LCM +
Sbjct: 104 WPDRMRCDRLPEQGNPDTLCMDYERTD 130
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
frizzled protein structure, cysteine-rich, SIG protein;
1.90A {Mus musculus} SCOP: a.141.1.1
Length = 127
Score = 80.9 bits (199), Expect = 1e-18
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 13 RLQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIG-AIPSCRGLCEDVKADCLPTLTALN 71
++ L+ ++CS + FFLC++YAP+C+ I C+ +CE + C P L
Sbjct: 38 AMEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYR 97
Query: 72 FILPPLFNCSRFPVSENNGLCMQNP 96
P C PV + G+C+
Sbjct: 98 HSWPESLACDELPVY-DRGVCISPE 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.007
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 200 MKSSLGPNALTCVTPPSPDAVPYIAVDA 227
+++SL A D+ P +A+ A
Sbjct: 25 LQASLKLYA--------DDSAPALAIKA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.011
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 35/111 (31%)
Query: 270 ALHSLSTYYHIAAWGI---PAVYAQLAL----ALHHVSGDELTGLCYIS-EPAI-LVYL- 319
L + + + + G+ A +A +L AL ++ +S E + +V+
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD-------VMSIESLVEVVFYR 1789
Query: 320 ------IIP--------YAVL-LLIGTVVGVFGAAALMKVRKEVREVGRNT 355
+P Y ++ + G V F AL V V VG+ T
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV---VERVGKRT 1837
Score = 37.0 bits (85), Expect = 0.014
Identities = 59/429 (13%), Positives = 112/429 (26%), Gaps = 184/429 (42%)
Query: 124 YLQEPQCTPRCDEDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRF------ 177
Y +E + LY++ LV ++ + TL L+ +D +
Sbjct: 169 YFEELR--------DLYQTY-HVLVGDLIKFSA-----ETLSELIRTTLDAEKVFTQGLN 214
Query: 178 -----RYPER--PVIFIAFCYNLISFVMIMKSSLGPNALTC-VTPPSPDAVPYIAVDALQ 229
P ++ IS +I L +T + +P + L+
Sbjct: 215 ILEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFTPGEL----RSYLK 268
Query: 230 SPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSS------EAL--------HSLS 275
T S G+ + +A ++ + W S +A+
Sbjct: 269 GAT-----------GHSQGL---VTAVA--IAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 276 TYYHIAAW------------GIP----AV---------------------YAQLALALHH 298
Y + + G+P ++ Q+ ++L +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 299 ------VSG--DELTGLCYI-----------------SE--PAI-LVYLII--PY----- 323
VSG L GL SE +L + P+
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 324 --AVLLLIGTVVGV---FGAAAL-MKVR-----KEVREVGRN-TIKLERLIARLTVFWSL 371
A L+ +V F A + + V ++R + + + ++ I RL V W
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW-- 490
Query: 372 YTMPAVGMLACLLYEWWQRPQEHALQALQAIDCTAPSCQIDPPRVSQITITLLRLFLFLV 431
+A +D P S + + L
Sbjct: 491 -------------------ETTTQFKATHILDF-------GPGGASGLGV--------LT 516
Query: 432 VGISSGMWV 440
G V
Sbjct: 517 HRNKDGTGV 525
Score = 33.1 bits (75), Expect = 0.24
Identities = 59/317 (18%), Positives = 85/317 (26%), Gaps = 129/317 (40%)
Query: 28 HIRFFL---CSVYAPLCS----------EHVIGAIPS----CRGLCEDVKADCLPTLTAL 70
+ FF+ C P S E+ G PS L + +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPMLSISNL---TQEQVQDYVNKT 356
Query: 71 NFILPPLFNCSRFPVSENNGLCMQNPINERKEKYTAPPKPKPLTCPRNFIATQYLQEPQC 130
N LP + +S NG +N + +
Sbjct: 357 NSHLPA---GKQVEISLVNG-------------------------AKNLVVSGP------ 382
Query: 131 TPRCDEDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFC 190
P+ +LY NL R +A S L D SR + ER + F
Sbjct: 383 -PQ----SLYGL---NLTLRKAKAPSGL--------------DQSRIPFSERKLKFSN-- 418
Query: 191 YNLISFVMIMKSSLGPNALTCVTPP--SP---DAVPYIAVDALQSPTCTF--------VF 237
F+ P V P S A I D L +F V+
Sbjct: 419 ----RFL--------P-----VASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVY 460
Query: 238 LV-----LYYLSMSAGIWWVILTLA-WYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQ 291
L LS S + + + KW +T HI +G P +
Sbjct: 461 DTFDGSDLRVLSGS-----ISERIVDCIIRLPVKW-ETTTQFKAT--HILDFG-PGGASG 511
Query: 292 LA-LALHHVSGDELTGL 307
L L + G TG+
Sbjct: 512 LGVLTHRNKDG---TGV 525
Score = 33.1 bits (75), Expect = 0.25
Identities = 48/261 (18%), Positives = 82/261 (31%), Gaps = 82/261 (31%)
Query: 129 QCTPRCD------EDALYRSEDKNLVERWMRALSWLCFTSTLFTLLTFWVDGSRFRYPER 182
+ P ED+L +E V M ++S L T + + V+ + P
Sbjct: 312 EAYPNTSLPPSILEDSLENNEG---VPSPMLSISNL----TQEQVQDY-VNKTNSHLPAG 363
Query: 183 PVIFIAFCYNLI----SFVMIMKSSLG-PNALTCVT--------PPSPD--AVPYIAVDA 227
+ I+ L+ + V+ S G P +L + P D +P+ +
Sbjct: 364 KQVEIS----LVNGAKNLVV----S-GPPQSLYGLNLTLRKAKAPSGLDQSRIPF----S 410
Query: 228 LQSPTCTFVFLVLY--YLSMSAGIWWVILTLAWYLSAANKWSSEALHSLSTYYHIAAWGI 285
+ + FL + + S L A+ ++ L + ++ I
Sbjct: 411 ERKLKFSNRFLPVASPFHSH-------------LLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 286 PAVYAQLALALHHVSGDELTGLCYISEPAILVYLIIPYAV------------LLLIGTVV 333
P VY G +L L S +V II V +L G
Sbjct: 458 P-VY-------DTFDGSDLRVLSG-SISERIVDCIIRLPVKWETTTQFKATHILDFGP-G 507
Query: 334 GVFGAAALMKVRKE---VREV 351
G G L K+ VR +
Sbjct: 508 GASGLGVLTHRNKDGTGVRVI 528
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 33.9 bits (78), Expect = 0.091
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 325 VLLLIGT-VVGVFGAAALMKVR--KEVREVGRNTIKLERLIARL 365
+ LIG F A A K +E+ + + +LIA L
Sbjct: 131 KMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANL 174
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 33.4 bits (77), Expect = 0.13
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 325 VLLLIGT-VVGVFGAAALMKVR--KEVREVGRNTIKLERLIARL 365
V IG F AL +V EV+ ++ ++
Sbjct: 127 VFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYC 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.22
Identities = 57/396 (14%), Positives = 101/396 (25%), Gaps = 138/396 (34%)
Query: 93 MQNPINERKEKYT------APPKPKPLTC------PRNFIATQ----YLQEPQCTPRCDE 136
M E + +Y C P++ ++ + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-----AV 61
Query: 137 DALYR------SEDKNLVERWMRAL-----SWL-------CFTSTLFTLL------TFWV 172
R S+ + +V++++ + +L ++ T + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 173 DGSRFR-YP---ERPVIFIAFC-YNLIS--FVMI--M----KSSLGPNALTCVTPPSPDA 219
D F Y +P + + L V+I + K+ +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------------- 166
Query: 220 VPYIAVDALQS--PTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEAL--HSLS 275
A+D S C F I+W L+ N S E +
Sbjct: 167 ----ALDVCLSYKVQCKMDF----------KIFW--------LNLKNCNSPETVLEMLQK 204
Query: 276 TYYHIAAWGIPAVYAQLALALH-HVSGDELTGLCYISEPAILVYLIIPYAVLLLI----- 329
Y I + L H EL L + PY LL+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSK--------PYENCLLVLLNVQ 254
Query: 330 -GTVVGVF--GAAALMKVR-KEV-REVGRNTIKLERLIARLTVFWSLYTMPAVGMLA-CL 383
F L+ R K+V + T L +L +L L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYL 311
Query: 384 LYEWWQRPQEHALQALQAIDCTAPSCQIDPPRVSQI 419
RPQ+ + +P R+S I
Sbjct: 312 ----DCRPQDLPREV----------LTTNPRRLSII 333
Score = 28.3 bits (62), Expect = 7.6
Identities = 53/308 (17%), Positives = 86/308 (27%), Gaps = 115/308 (37%)
Query: 54 GLCEDVKADCLPTLTALNFILPPLFNCSRFPVSENNGLCMQNPINERKEKYTAPPKPKPL 113
C + L L L + + P + SR S N L + + E + + P L
Sbjct: 190 KNCNSPE-TVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 114 -----------------TCP-----RNFIATQYLQEPQCTPRCDED---ALYRSEDKNLV 148
+C R T +L T + L E K+L+
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 149 ERWM---------RALSWLCFTSTLFTLL-----TFWVDGSRFRYPERPVIFIAFCYNLI 194
+++ L+ ++ W +++ N
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW---DNWKH-----------VNCD 353
Query: 195 SFVMIMKSSLGPNALTCVTPPS-----------PDAVPYIAVDALQSPTCTFVFLVLYYL 243
I++SSL N L P P + I PT L
Sbjct: 354 KLTTIIESSL--NVLE---PAEYRKMFDRLSVFPPSAH-I-------PTIL--------L 392
Query: 244 SMSAGIWW--------VILTLAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLAL- 294
S+ IW+ V++ S K E ST IP++Y +L +
Sbjct: 393 SL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKE-----STIS------IPSIYLELKVK 438
Query: 295 -----ALH 297
ALH
Sbjct: 439 LENEYALH 446
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 31.9 bits (73), Expect = 0.37
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 325 VLLLIGT-VVGVFGAAALMKVR--KEVREVGRNTIKLERLIARL 365
VL ++G V + KEVR R E+ +
Sbjct: 137 VLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV 180
>3nnb_A Alginate lyase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Length = 382
Score = 29.8 bits (66), Expect = 1.9
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 214 PPSPDAVPYIAVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHS 273
P PD +PYI D ++P MS + L LA+Y S K++ +A+
Sbjct: 74 PSKPDGLPYIRKDGQRNPE-LDKLDRNKLGDMSKAVT--TLGLAYYFSGDEKYAQKAVD- 129
Query: 274 LSTYYHIAAW 283
+ W
Sbjct: 130 -----FLNVW 134
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 29.0 bits (64), Expect = 4.0
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 21 INSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALN 71
+ CSR + + VY C C C +V CL L+
Sbjct: 241 LGPECSRAV---MKLVYCAHCLGVP--GARPCPDYCRNVLKGCLANQADLD 286
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor
tyrosine kinase, frizzled CRD, ATP-binding, D bond,
glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Length = 197
Score = 28.3 bits (62), Expect = 4.6
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 20/106 (18%)
Query: 14 LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVI-GAIPSCRGLCEDVKAD-CLPTLTAL- 70
+ ++ C LC+ CS V+ +P CR C VK C A+
Sbjct: 58 AWNELKAVSPLCRPAAEALLCNHLFQECSPGVLPTPMPICREYCLAVKELFCAKEWLAME 117
Query: 71 -------------NFILPPLFNCSRFP-VSENNGLCMQNPINERKE 102
+P CS+ P + ++ C + P + K+
Sbjct: 118 GKTHRGLYRSGMHFLPVP---ECSKLPSMHQDPTACTRLPYLDYKK 160
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport
protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas
pharaonis} PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A*
2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Length = 239
Score = 28.1 bits (62), Expect = 5.5
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 7/150 (4%)
Query: 157 WLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFV--MIMKSSLGPNALTCVTP 214
WL L L F G ER + I+ V ++M +G V
Sbjct: 9 WLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVG---WVPVAE 65
Query: 215 PSPDAVPYIAVDALQSPTCTFVFLVLY--YLSMSAGIWWVILTLAWYLSAANKWSSEALH 272
+ A YI F+ L+ I + + + A E
Sbjct: 66 RTVFAPRYIDWILTTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYA 125
Query: 273 SLSTYYHIAAWGIPAVYAQLALALHHVSGD 302
+ + + + S
Sbjct: 126 LFGMGAVAFLGLVYYLVGPMTESASQRSSG 155
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 28.5 bits (63), Expect = 6.1
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 256 LAWYLSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTGLC-YISEPA 314
+ +S N W S S S + + A WG+ ++ L + EP
Sbjct: 100 IRDKISNGN-WQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPL 158
Query: 315 I 315
I
Sbjct: 159 I 159
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET
CLR; 3.20A {Acetabularia acetabulum}
Length = 229
Score = 27.6 bits (61), Expect = 7.8
Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 17/195 (8%)
Query: 157 WLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFV--MIMKSSLGPNALTCVTP 214
W+ F + F V + +I I+ M +
Sbjct: 14 WIVFAIMAAAAIAFGVAVHFRPSELKSAYYINIAICTIAATAYYAMAVNYQ------DLT 67
Query: 215 PSPDAVPYIA--VDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALH 272
+ + A +D + + + L++ I WVI + + + E H
Sbjct: 68 MNGERQVVYARYIDWVLTTPLLLLDLIVMTKMGGVMISWVIGADIFMIVFGILGAFEDEH 127
Query: 273 SLSTYYHIAAWG-----IPAVYAQLALALHHVSGDELTGLCYISEPAILVYLIIPYAVLL 327
Y IA +Y S + + + L L + Y V+
Sbjct: 128 KFKWVYFIAGCVMQAVLTYGMYNATWKDDLKKSPEYHSSYVSLL--VFLSILWVFYPVVW 185
Query: 328 LIGTVVGVFGAAALM 342
G+ GV
Sbjct: 186 AFGSGSGVLSVDNEA 200
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein
structure, cell-free expre proton transport; HET: LYR;
NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Length = 243
Score = 27.7 bits (60), Expect = 8.3
Identities = 24/192 (12%), Positives = 56/192 (29%), Gaps = 8/192 (4%)
Query: 157 WLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVMIMKSSLGPNALTCVTPPS 216
WL + L + + F+V+ R + + ++ I+F M T S
Sbjct: 17 WLVTAALLASTVFFFVERDRVSAKWKTSLTVSGLVTGIAFWHYMYMRGVWIE----TGDS 72
Query: 217 PDAVPYIA--VDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEALHSL 274
P YI + ++ L + +++ L + + +
Sbjct: 73 PTVFRYIDWLLTVPLLICEFYLILAAATNVAGSLFKKLLVGSLVMLVFGYMGEAGIMAAW 132
Query: 275 STYYHIAAWGIPAVYAQLALALHHVSGDELTGLCYISEPAILVYLI--IPYAVLLLIGTV 332
+ + +Y A + + + + Y V G +
Sbjct: 133 PAFIIGCLAWVYMIYELWAGEGKSACNTASPAVQSAYNTMMYIIIFGWAIYPVGYFTGYL 192
Query: 333 VGVFGAAALMKV 344
+G G+A + +
Sbjct: 193 MGDGGSALNLNL 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.459
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,438,953
Number of extensions: 439340
Number of successful extensions: 1059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 30
Length of query: 471
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 374
Effective length of database: 3,993,456
Effective search space: 1493552544
Effective search space used: 1493552544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.0 bits)