RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8180
         (471 letters)



>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 122

 Score = 81.3 bits (200), Expect = 3e-19
 Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 14  LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIGAIPSCRGLCEDVKADCLPTLTALNFI 73
           +    PL+   CS  ++FFLCS+Y P+C E     +P CR +CE  KA C P +    F 
Sbjct: 38  VHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFA 97

Query: 74  LPPLFNCSRFPVS-ENNGLCM 93
            P    C R P     + LCM
Sbjct: 98  WPDRMRCDRLPEQGNPDTLCM 118


>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3
           (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 125

 Score = 78.2 bits (192), Expect = 3e-18
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 14  LQALMPLINSNCSRHIRFFLCSVYAPLCSEHVIG-AIPSCRGLCEDVKADCLPTLTALNF 72
           ++    L+ ++CS  + FFLC++YAP+C+       I  C+ +CE  +  C P L     
Sbjct: 37  MEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRH 96

Query: 73  ILPPLFNCSRFPVSENNGLCMQ 94
             P    C   P   + G+C+ 
Sbjct: 97  SWPESLACDELP-VYDRGVCIS 117


>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium
           salinarum [TaxId: 2242]}
          Length = 227

 Score = 28.9 bits (64), Expect = 1.3
 Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 8/132 (6%)

Query: 157 WLCFTSTLFTLLTFWVDGSRFRYPE-RPVIFIAFCYNLISFV--MIMKSSLGPNALTCVT 213
            L         L F V G     P+ +    I      I+F   + M    G   +    
Sbjct: 10  ALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYG-LTMVPFG 68

Query: 214 PPSPDAVPYIAVDALQSPTCTFVFLVLYYLSM--SAGIWWVILTLAWYLSAANKWSSEAL 271
                       D L   T   + L L  L       I  ++      +      +   +
Sbjct: 69  GEQNPIYWARYADWL--FTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKV 126

Query: 272 HSLSTYYHIAAW 283
           +S    +   + 
Sbjct: 127 YSYRFVWWAIST 138


>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120
           [TaxId: 103690]}
          Length = 226

 Score = 26.9 bits (59), Expect = 4.4
 Identities = 18/138 (13%), Positives = 32/138 (23%), Gaps = 9/138 (6%)

Query: 155 LSWLCFTSTLFTLLTFWVDGSRFRYPERPVIFIAFCYNLISFVM--IMKSSLGPNALTCV 212
           L W+         L FW      R   +    +A    + S +    M    G       
Sbjct: 7   LHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQG------K 60

Query: 213 TPPSPDAVPYI-AVDALQSPTCTFVFLVLYYLSMSAGIWWVILTLAWYLSAANKWSSEAL 271
              +     Y   +D + +     + L    +      W +I  L             A 
Sbjct: 61  VEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIAD 120

Query: 272 HSLSTYYHIAAWGIPAVY 289
            S   +     +      
Sbjct: 121 LSERDWVRYLWYICGVCA 138


>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA
           protein {Escherichia coli [TaxId: 562]}
          Length = 173

 Score = 26.4 bits (58), Expect = 5.8
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 260 LSAANKWSSEALHSLSTYYHIAAWGIPAVYAQLALALHHVSGDELTGLC-YISEPAI 315
           +S  N W S    S S + + A WG+      ++          L  +     EP I
Sbjct: 101 ISNGN-WQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLI 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,857,008
Number of extensions: 87707
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 9
Length of query: 471
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,185,626
Effective search space: 452909132
Effective search space used: 452909132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)