BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8181
         (361 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 78/132 (59%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           G+  Y C  C K+F +  +L  H RTH GE+P++C  C KSF+    L +H   HTGEKP
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
           ++C  C K FS  +NL+ H R H+G+KPY C  C   F+Q  HL+ H+R HT E+PY C 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137

Query: 349 GCNKRYISLSGL 360
            C K +     L
Sbjct: 138 ECGKSFSREDNL 149



 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 75/115 (65%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           G+  Y+C  C K+F Q +NL+ H RTH GE+P+ C  C KSF+QLAHL+ H   HTGEKP
Sbjct: 74  GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133

Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           ++C  C K FS   NL TH R H+G+KPY C  C   F++   L +H+R HT ++
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188



 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 79/132 (59%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           G+  Y+C  C K+F    +L  H RTH GE+P++C  C KSF+Q A+L+ H   HTGEKP
Sbjct: 46  GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105

Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
           + C  C K FS  ++L+ H R H+G+KPY C  C   F++  +L  H+R HT E+PY C 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165

Query: 349 GCNKRYISLSGL 360
            C K +     L
Sbjct: 166 ECGKSFSRRDAL 177



 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 65/105 (61%)

Query: 257 GERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           GE+P+ C  C KSF++  HL +H   HTGEKP++C  C K FS   +L  H R H+G+KP
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
           Y C  C   F+Q  +L+ H+R HT E+PY C  C K +  L+ LR
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 298 FSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISL 357
           F S+S++     L  G+KPY C  C   F++  HL  H+R HT E+PY C  C K +   
Sbjct: 4   FGSSSSV-AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62

Query: 358 SGL 360
             L
Sbjct: 63  KDL 65


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 6/109 (5%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSG 313
           +RPF C    C K + +L+HLQ H   HTGEKP++C +  C++RFS +  LK H R H+G
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKG--CNKRYISLSGL 360
            KP+ C+ C  +F++  HLK H R HT E+P+ C+   C K++     L
Sbjct: 64  VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112



 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 4/106 (3%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQ 295
           C K + +LS+L++H R H GE+P+QC+   C + F++   L++H   HTG KP +C  CQ
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73

Query: 296 KRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLH 339
           ++FS + +LKTH R H+G+KP+ C    C  +F +   L  H  +H
Sbjct: 74  RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119



 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 225 KKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLV 282
           +K  G+  Y+C+   C + F +   LK H R H G +PFQC  C + F++  HL+ H   
Sbjct: 29  RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88

Query: 283 HTGEKPHECIY--CQKRFSSTSNLKTHMRLH 311
           HTGEKP  C +  CQK+F+ +  L  H  +H
Sbjct: 89  HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119



 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 340 TNERPYVCK--GCNKRYISLSGL 360
           + +RP++C   GCNKRY  LS L
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHL 24


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 59/86 (68%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
           E+P++C  C KSF+Q ++LQKH   HTGEKP++C  C K FS +S+L+ H R H+G+KPY
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61

Query: 318 HCEVCPARFTQYVHLKLHKRLHTNER 343
            C  C   F++  HL  H+R H N++
Sbjct: 62  KCPECGKSFSRSDHLSRHQRTHQNKK 87



 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 55/83 (66%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
           Y+C  C K+F Q SNL+ H RTH GE+P++C  C KSF+Q + LQKH   HTGEKP++C 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64

Query: 293 YCQKRFSSTSNLKTHMRLHSGQK 315
            C K FS + +L  H R H  +K
Sbjct: 65  ECGKSFSRSDHLSRHQRTHQNKK 87



 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
           EKP++C  C K FS +SNL+ H R H+G+KPY C  C   F+Q   L+ H+R HT E+PY
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61

Query: 346 VCKGCNKRY 354
            C  C K +
Sbjct: 62  KCPECGKSF 70



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  Y+C  C K+F Q S+L+ H RTH GE+P++C  C KSF++  HL +H   H  +K
Sbjct: 29  GEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87



 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
           +KPY C  C   F+Q  +L+ H+R HT E+PY C  C K +   S L+
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQ 49


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 5/110 (4%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIY--CQ 295
           C K F   S ++ HL TH G R   C  C K+F + + L++H LVHTGEKP +C +  C 
Sbjct: 13  CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71

Query: 296 KRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNER 343
           KRFS   NL+TH+R+H+G +PY C  + C  +F Q  +LK H   H   +
Sbjct: 72  KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121



 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC--EVCP 323
           CTK F   + ++KH   H G + H C  C K F  +S LK H  +H+G+KP+ C  E C 
Sbjct: 13  CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71

Query: 324 ARFTQYVHLKLHKRLHTNERPYVC--KGCNKRYISLSGLR 361
            RF+   +L+ H R+HT +RPYVC   GCNK++   + L+
Sbjct: 72  KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 111



 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 235 CNVCYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECI 292
           C  C K F + S LK H   H GE+PFQC    C K F+   +L+ H  +HTG++P+ C 
Sbjct: 37  CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96

Query: 293 Y--CQKRFSSTSNLKTHMRLHSGQK 315
           +  C K+F+ ++NLK+H+  H+  K
Sbjct: 97  FDGCNKKFAQSTNLKSHILTHAKAK 121



 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 229 GKMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQC--NICTKSFTQLAHLQKHHLVHT 284
           G+  ++C    C K F    NL+ H+R H G+RP+ C  + C K F Q  +L+ H L H 
Sbjct: 59  GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118

Query: 285 GEK 287
             K
Sbjct: 119 KAK 121


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
           ++C +C K+F + S L  HL  H+  RP+ C  C K F Q + ++KH  +HTGEKPH+C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 293 YCQKRFSSTSNLKTHMRLHSG 313
            C K FS +SNL TH R H+G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82



 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 50/81 (61%)

Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
           F C IC KSF + + L  H L+H+  +P+ C YC KRF   S++K H  +H+G+KP+ C+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 321 VCPARFTQYVHLKLHKRLHTN 341
           VC   F+Q  +L  H R HT 
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82



 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query: 290 ECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKG 349
           +C  C K F  +S L TH+ +HS  +PY C+ C  RF Q   +K H  +HT E+P+ C+ 
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62

Query: 350 CNKRYISLSGL 360
           C K +   S L
Sbjct: 63  CGKAFSQSSNL 73



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
           + C++C   F +   L  H  +H++ RPY C+ C KR+   S ++
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMK 46



 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNG 257
           G+  ++C VC K F Q SNL  H R H G
Sbjct: 54  GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 73/139 (52%), Gaps = 15/139 (10%)

Query: 238 CYKTFGQLSNLKVHLRT---HNGERPFQCNI--CTKS---FTQLAHLQKHHLVHTGEKPH 289
           C + F     L  H+ +   H   + F C+   C++    F     L  H   HTGEKPH
Sbjct: 9   CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68

Query: 290 ECIY--CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHK-RLHTNERP 344
           +C +  C+K +S   NLKTH+R H+G+KPY C  E C   F+       H+ R H+NE+P
Sbjct: 69  KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128

Query: 345 YVCK--GCNKRYISLSGLR 361
           YVCK  GC KRY   S LR
Sbjct: 129 YVCKLPGCTKRYTDPSSLR 147



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 201 GSCGSPLSPNSQGSRGYRSLPYPLKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGE 258
           G C   L P     +    L   +++  G+  ++C    C K++ +L NLK HLR+H GE
Sbjct: 40  GGCSRELRP----FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95

Query: 259 RPFQCN--ICTKSFTQLAHLQKH-HLVHTGEKPHECIY--CQKRFSSTSNLKTHMR 309
           +P+ C    C+K+F+  +   KH +  H+ EKP+ C    C KR++  S+L+ H++
Sbjct: 96  KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F   SNL  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F+ +   K H ++H  QK
Sbjct: 65  CDICGRKFARSDERKRHTKIHLRQK 89



 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F+  ++L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNER 343
           P+ C++C  +F +    K H ++H  ++
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 286 EKPHEC--IYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS +SNL  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 62  PFACDICGRKF 72



 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H  +H  +K
Sbjct: 31  GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F Q +NL  H+R H G++PFQC IC ++F+Q A L  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F++      H ++H  QK
Sbjct: 65  CDICGRKFATLHTRTRHTKIHLRQK 89



 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS  +NL TH+R+H+GQKP+ C +C   F+Q   L  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61

Query: 344 PYVCKGCNKRYISL 357
           P+ C  C +++ +L
Sbjct: 62  PFACDICGRKFATL 75



 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 6/86 (6%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F+Q  +L  H  +HTG+KP +C  C + FS  ++L  H+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61

Query: 316 PYHCEVCPARF----TQYVHLKLHKR 337
           P+ C++C  +F    T+  H K+H R
Sbjct: 62  PFACDICGRKFATLHTRTRHTKIHLR 87



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  ++C +C + F Q ++L  H+RTH GE+PF C+IC + F  L    +H  +H  +K
Sbjct: 31  GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 314 QKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
           ++PY C  E C  RF+Q  +L  H R+HT ++P+ C+ C + +   + L
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASL 50


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F++ A L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNER 343
           P+ C++C  +F +    K H ++H  ++
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F + + L  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F+ +   K H ++H  QK
Sbjct: 65  CDICGRKFARSDERKRHTKIHLRQK 89



 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS ++ L  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 62  PFACDICGRKF 72



 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H  +H  +K
Sbjct: 31  GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 2/88 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F++ A L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNER 343
           P+ C++C  +F +    K H ++H  ++
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F + ++L  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F+ +   K H ++H  QK
Sbjct: 65  CDICGRKFARSDERKRHTKIHLRQK 89



 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS +++L  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 62  PFACDICGRKF 72



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H  +H  +K
Sbjct: 31  GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F+Q   L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNER 343
           P+ C++C  +F +    K H ++H  ++
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F Q  +L  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F+ +   K H ++H  QK
Sbjct: 65  CDICGRKFARSDERKRHTKIHLRQK 89



 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 286 EKPHEC--IYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS + +L  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 62  PFACDICGRKF 72



 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 219 SLPYPLKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQK 278
           SL   ++   G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++
Sbjct: 21  SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80

Query: 279 HHLVHTGEK 287
           H  +H  +K
Sbjct: 81  HTKIHLRQK 89


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 18/151 (11%)

Query: 216 GYRSLPYPLKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFT 271
           G ++LP   K+      Y C+   C   + +   L+ HL  H GE+PF C    C K FT
Sbjct: 2   GEKALPVVYKR------YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFT 55

Query: 272 QLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHM-RLHSGQKPY---HCEVCPAR 325
            L HL +H L HTGEK   C    C  RF++ +N+K H  R H+ +      H E C   
Sbjct: 56  SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA 115

Query: 326 FTQYVHLKLHKRLHTNERPYVC--KGCNKRY 354
           F ++  LK+H+  HT + PY C  +GC+KR+
Sbjct: 116 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 146



 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 45/129 (34%)

Query: 221 PYPLKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQC----------------- 263
           P+P K++          C K F  L +L  H  TH GE+ F C                 
Sbjct: 42  PFPCKEEG---------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKK 92

Query: 264 ------NI-----------CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNL 304
                 NI           C K+F +   L+ H   HT + P+EC +  C KRFS  S L
Sbjct: 93  HFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL 152

Query: 305 KTHMRLHSG 313
           K H ++H+G
Sbjct: 153 KRHEKVHAG 161


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS  +NL TH+R+H+GQKP+ C +C   F+Q+  L  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61

Query: 344 PYVCKGCNKRYISL 357
           P+ C  C +++ +L
Sbjct: 62  PFACDICGRKFATL 75



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F Q +NL  H+R H G++PFQC IC ++F+Q   L +H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F++      H ++H  QK
Sbjct: 65  CDICGRKFATLHTRDRHTKIHLRQK 89



 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F+Q  +L  H  +HTG+KP +C  C + FS  + L  H+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61

Query: 316 PYHCEVCPARF----TQYVHLKLHKR 337
           P+ C++C  +F    T+  H K+H R
Sbjct: 62  PFACDICGRKFATLHTRDRHTKIHLR 87



 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  ++C +C + F Q + L  H+RTH GE+PF C+IC + F  L    +H  +H  +K
Sbjct: 31  GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89



 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 314 QKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
           ++PY C  E C  RF+Q  +L  H R+HT ++P+ C+ C + +   +GL
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGL 50


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F++   L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNER 343
           P+ C++C  +F +    K H ++H  ++
Sbjct: 62  PFACDICGRKFARSDERKRHTKIHLRQK 89



 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F +   L  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
           C  C ++F+ +   K H ++H  QK
Sbjct: 65  CDICGRKFARSDERKRHTKIHLRQK 89



 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS +  L  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 62  PFACDICGRKF 72



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H  +H  +K
Sbjct: 31  GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 2/87 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F++   L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNE 342
           P+ C++C  +F +    K H ++H  +
Sbjct: 61  PFACDICGRKFARSDERKRHTKIHLRQ 87



 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F +   L  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQ 314
           C  C ++F+ +   K H ++H  Q
Sbjct: 64  CDICGRKFARSDERKRHTKIHLRQ 87



 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS +  L  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 61  PFACDICGRKF 71



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVH 283
           G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H  +H
Sbjct: 30  GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           ERP+ C +  C + F++   L +H  +HTG+KP +C  C + FS + +L TH+R H+G+K
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 316 PYHCEVCPARFTQYVHLKLHKRLH 339
           P+ C++C  +F +    K H ++H
Sbjct: 62  PFACDICGRKFARSDERKRHTKIH 85



 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
           Y C V  C + F +   L  H+R H G++PFQC IC ++F++  HL  H   HTGEKP  
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 291 CIYCQKRFSSTSNLKTHMRLH 311
           C  C ++F+ +   K H ++H
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           E+P+ C    C +RFS +  L  H+R+H+GQKP+ C +C   F++  HL  H R HT E+
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 344 PYVCKGCNKRY 354
           P+ C  C +++
Sbjct: 62  PFACDICGRKF 72



 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVH 283
           G+  ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H  +H
Sbjct: 31  GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCP 323
           CTK +T+ +HL+ H   HTGEKP++C +  C  RF+ +  L  H R H+G KP+ C VC 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82

Query: 324 ARFTQYVHLKLHKRLHTN 341
             F++  HL LH + H N
Sbjct: 83  RSFSRSDHLALHMKRHQN 100



 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 230 KMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTG 285
           ++HY C+   C K + + S+LK HLRTH GE+P++C    C   F +   L +H+  HTG
Sbjct: 14  RIHY-CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLH 311
            KP +C  C + FS + +L  HM+ H
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMKRH 98



 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 289 HECIY--CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERP 344
           H C Y  C K ++ +S+LK H+R H+G+KPY C  E C  RF +   L  H R HT  +P
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75

Query: 345 YVCKGCNKRY 354
           + C  CN+ +
Sbjct: 76  FQCGVCNRSF 85



 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 224 LKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKH 279
           L+   G+  Y+C    C   F +   L  H R H G +PFQC +C +SF++  HL  H
Sbjct: 37  LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query: 230 KMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
           K  + C  C + F +  NL +H RTH  ERP+ C+IC K+F +  HL+ H  +H+ EKP 
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74

Query: 290 ECIYCQKRFSSTSNLKTHMRLH 311
           +C  C K F  +  L  H  LH
Sbjct: 75  KCQECGKGFCQSRTLAVHKTLH 96



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
           ++ F C  C + FT+  +L  H   HT E+P+ C  C K F    +L+ H  +HS +KP+
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74

Query: 318 HCEVCPARFTQYVHLKLHKRLH 339
            C+ C   F Q   L +HK LH
Sbjct: 75  KCQECGKGFCQSRTLAVHKTLH 96



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGC 350
           C +C + F+ + NL  H R H+ ++PY C++C   F +  HL+ H+ +H+ E+P+ C+ C
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

Query: 351 NKRY 354
            K +
Sbjct: 80  GKGF 83



 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
           +K + C+ C   FT+  +L +H+R HT+ERPY C  C+K +     LR
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 260 PFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
           P +C +C K F++   L+ H   HTG KP++C  C    + +S+L  H+R+HS ++P+ C
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

Query: 320 EVCPARFTQYVHLKLHKRLHTNE 342
           ++CP        L +H R HT +
Sbjct: 68  QICPYASRNSSQLTVHLRSHTGD 90



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 37/63 (58%)

Query: 288 PHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
           PH+C  C K FS    LKTHMR H+G KPY C+ C         L  H R+H++ERP+ C
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

Query: 348 KGC 350
           + C
Sbjct: 68  QIC 70



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
           ++C VC K F +   LK H+R H G +P++C  C  +    + L KH  +H+ E+P +C 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 293 YCQKRFSSTSNLKTHMRLHSGQ 314
            C     ++S L  H+R H+G 
Sbjct: 69  ICPYASRNSSQLTVHLRSHTGD 90



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCN 351
           P+ CEVC   F++   LK H R HT  +PY CK C+
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCD 43


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 228 DGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKH---HLVHT 284
            G    EC  C+K F     LKVH R H GE+PF+C  C K + +  +L +H   + ++ 
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62

Query: 285 GEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHK-RLHTN 341
            E+   C  CQ+ F     L+ HM  H+G+ PY C  C  +F Q   L+ H  +LH+ 
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120



 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMR---LHS 312
           +G    +C  C K F    +L+ H+  HTGEKP EC  C K +    NL  H     ++ 
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62

Query: 313 GQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
            ++ + C VC   F + + L+LH   HT E PY C  C+++++    L+
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           ++P++C+ C  SF    +L  H  VHTGEKP+ C  C  +F+  +NLKTH R+HSG+KP
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP++C  CQ  F    NL +H  +H+G+KPY C +C A+F +  +LK H R+H+ E+P
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           Y+C+ C  +F    NL  H   H GE+P++CNIC   F + A+L+ H  +H+GEKP
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
            KPY C+ C A F    +L  HK +HT E+PY C  C  ++   + L+
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62



 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           G+  Y CN+C   F + +NLK H R H+GE+P
Sbjct: 42  GEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 230 KMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +  Y+C+ C K+F   S+L  H RTH GE+P++C+ C K+F Q +HL  HH VHTG  P
Sbjct: 16  RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           R ++C+ C KSF+  + L KH   HTGEKP++C  C K F   S+L  H R+H+G  P
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           + ++C  C K FS +S+L  H R H+G+KPY C+ C   F Q  HL  H R+HT   P
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
           ++ Y C+ C   F+    L  H+R HT E+PY C  C K +I  S L
Sbjct: 16  RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62



 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           G+  Y+C+ C K F Q S+L  H R H G  P
Sbjct: 43  GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ- 314
           +G     C IC K F  + HL +H L H+GEKP+ C  C  RF     +  H+R H G  
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62

Query: 315 -KPYHCEVCPARFTQYVHLKLH-KRLHTN 341
            KPY C+ C   F++  HL  H K++H+ 
Sbjct: 63  GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91



 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNE- 342
           +G     C  C K F    +L  H   HSG+KPY C VC  RF +   +  H R H    
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62

Query: 343 -RPYVCKGCNKRY 354
            +PY+C+ C K +
Sbjct: 63  GKPYICQSCGKGF 75



 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGE-- 286
           G     C +C K F  + +L  H  +H+GE+P+ C +C   F +   +  H   H G   
Sbjct: 4   GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63

Query: 287 KPHECIYCQKRFSSTSNLKTHMR-LHSG 313
           KP+ C  C K FS   +L  H++ +HSG
Sbjct: 64  KPYICQSCGKGFSRPDHLNGHIKQVHSG 91


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCN-IC--------TKSFTQLAHLQKHHLVHTGEKP 288
           C +TF  +  L  H+   +   P Q N +C         KSF     L  H  VHTGEKP
Sbjct: 31  CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90

Query: 289 HECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNER 343
             C +  C K F+ + NLK H R H+G+KP+ CE   C  RF      K H  +HT+++
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149



 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 234 ECNVCYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHEC 291
           EC    K+F     L  H+R H GE+PF C    C K F +  +L+ H   HTGEKP +C
Sbjct: 64  ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123

Query: 292 IY--CQKRFSSTSNLKTHMRLHSGQK 315
            +  C +RF+++S+ K HM +H+  K
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDK 149


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 228 DGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           DG+++Y C VC +++  L++L+ H   H+ E+ + C  C K F    +  KH + HTGE+
Sbjct: 18  DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77

Query: 288 PHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
            ++C+ C K F +   + +H++    Q P
Sbjct: 78  RYQCLACGKSFINYQFMSSHIKSVHSQDP 106



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           +G   + C +C +S+  L  L++H  +H+ EK + C YC+K F        H   H+G++
Sbjct: 18  DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77

Query: 316 PYHCEVCPARFTQYVHLKLH-KRLHTNE 342
            Y C  C   F  Y  +  H K +H+ +
Sbjct: 78  RYQCLACGKSFINYQFMSSHIKSVHSQD 105



 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%)

Query: 272 QLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVH 331
           ++ H   + L+  G   + CI C++ +   ++L+ H  +HS +K Y C  C   F    +
Sbjct: 6   KVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEY 65

Query: 332 LKLHKRLHTNERPYVCKGCNKRYIS 356
              H+  HT ER Y C  C K +I+
Sbjct: 66  RTKHEIHHTGERRYQCLACGKSFIN 90


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCP 323
           C K++T+ +HL+ H   HTGEKP+ C +  C  +F+ +  L  H R H+G +P+ C+ C 
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73

Query: 324 ARFTQYVHLKLHKRLH 339
             F++  HL LH + H
Sbjct: 74  RAFSRSDHLALHMKRH 89



 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 289 HECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNERP 344
           H C Y  C K ++ +S+LK H+R H+G+KPYHC+   C  +F +   L  H R HT  RP
Sbjct: 7   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66

Query: 345 YVCKGCNKRY 354
           + C+ C++ +
Sbjct: 67  FQCQKCDRAF 76



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 199 DDGSCGSPLSPNSQGSRGYRSLPYPLKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHN 256
           D   CG   + +S        L   L+   G+  Y C+   C   F +   L  H R H 
Sbjct: 10  DYAGCGKTYTKSSH-------LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62

Query: 257 GERPFQCNICTKSFTQLAHLQKH 279
           G RPFQC  C ++F++  HL  H
Sbjct: 63  GHRPFQCQKCDRAFSRSDHLALH 85


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCP 323
           C K++T+ +HL+ H   HTGEKP+ C +  C  +F+ +  L  H R H+G +P+ C+ C 
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72

Query: 324 ARFTQYVHLKLHKRLH 339
             F++  HL LH + H
Sbjct: 73  RAFSRSDHLALHMKRH 88



 Score = 55.5 bits (132), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 289 HECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNERP 344
           H C Y  C K ++ +S+LK H+R H+G+KPYHC+   C  +F +   L  H R HT  RP
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65

Query: 345 YVCKGCNKRY 354
           + C+ C++ +
Sbjct: 66  FQCQKCDRAF 75



 Score = 38.5 bits (88), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 224 LKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHL 281
           L+   G+  Y C+   C   F +   L  H R H G RPFQC  C ++F++  HL  H  
Sbjct: 27  LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86

Query: 282 VH 283
            H
Sbjct: 87  RH 88


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           +G++ + C  C KSFT  +   +H  +H G +P+ C  C K+F    +L  HM++H+G K
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64

Query: 316 PYHCEVCPARF 326
           PY C +C  RF
Sbjct: 65  PYECNICAKRF 75



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKR 297
           C K+F   S    H+  H G RP+ C +C K F    HL  H  +HTG KP+EC  C KR
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74

Query: 298 FSSTSNLKTHM 308
           F    +   H+
Sbjct: 75  FMWRDSFHRHV 85



 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +G+K + C  C K F+  S    HM +H G +PY C VC  +F    HL  H ++HT  +
Sbjct: 6   SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64

Query: 344 PYVCKGCNKRYI 355
           PY C  C KR++
Sbjct: 65  PYECNICAKRFM 76


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
           E+P+ C  C K+F++ + L +H  VHTGEKP++C+ C K FS  S L  H R+H+
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTN 341
           EKP+ C+ C K FS +S L  H R+H+G+KPY C  C   F+Q   L  H+R+HT+
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHT 284
           Y C  C K F + S L  H R H GE+P++C  C K+F+Q + L  H  +HT
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
           +KPY C  C   F++   L  H+R+HT E+PY C  C K +   SGL
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQC--NICTKSFTQLAHLQKHHLVHTGEKPHECIY-- 293
           C   + +   L+ HL  H GE+PF C    C K FT L HL +H L HTGEK   C    
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70

Query: 294 CQKRFSSTSNLKTHM-RLHS 312
           C  RF++ +N+K H  R H+
Sbjct: 71  CDLRFTTKANMKKHFNRFHN 90



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEV-- 321
           C  ++ +   LQ H   HTGEKP  C    C+K F+S  +L  H   H+G+K + C+   
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70

Query: 322 CPARFTQYVHLKLH-KRLH 339
           C  RFT   ++K H  R H
Sbjct: 71  CDLRFTTKANMKKHFNRFH 89



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 294 CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVC--KG 349
           C   ++    L+ H+  H+G+KP+ C  E C   FT   HL  H   HT E+ + C   G
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70

Query: 350 CNKRYISLSGLR 361
           C+ R+ + + ++
Sbjct: 71  CDLRFTTKANMK 82


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 294 CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHT 340
           C +RFS +  L  H+R+H+GQKP+ C +C   F++  HL  H R HT
Sbjct: 27  CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 259 RPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
           RP+ C +  C + F++   L +H  +HTG+KP +C  C + FS + +L TH+R H+
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHT 284
           Y C V  C + F +   L  H+R H G++PFQC IC ++F++  HL  H   HT
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 35.0 bits (79), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 315 KPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRY 354
           +PY C  E C  RF++   L  H R+HT ++P+ C+ C + +
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59



 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 224 LKKKDGKMHYECNVCYKTFGQLSNLKVHLRTH 255
           ++   G+  ++C +C + F +  +L  H+RTH
Sbjct: 41  IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTH 307
           +PFQC IC ++F++  HL  H   HTGEKP  C  C ++F+ +   K H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKH 279
           ++C +C + F +  +L  H+RTH GE+PF C+IC + F +    ++H
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHK 336
           KP +C  C + FS + +L TH+R H+G+KP+ C++C  +F +    K H+
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51



 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRY 354
           KP+ C +C   F++  HL  H R HT E+P+ C  C +++
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C +C+K+FTQ AHL +H   HTGEKP
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+VC   FTQ  HL  H++ HT E+P
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC VC K F Q ++L  H +TH GE+P
Sbjct: 13  YECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C K F+  ++L  H + H+G+KP
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           ERPF CN C K++   + L +H   H G +P  C  C K F   S +  H+++H  +
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVH 283
           + CN C KT+   S L  H R H G RP  C  C K F   + + +H  VH
Sbjct: 5   FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55



 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           E+P  C +C K +   S L  H R H G +P  C  C   F     +  H ++H N+
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58



 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNK 352
           ++P+ C  C   +     L  H+R H   RP  C  C K
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGK 40


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
           Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 27/55 (49%)

Query: 285 GEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLH 339
           G    EC YC K F S   L  H+R H+G+KPY CE C     Q   L+ H   H
Sbjct: 1   GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 234 ECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLA----HLQKHH 280
           EC+ C K F     L +HLRTH GE+P++C  C  +  Q      HL++HH
Sbjct: 6   ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 262 QCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLH 311
           +C+ C K F    +L  H   HTGEKP++C +C+   +  ++L+ H+  H
Sbjct: 6   ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 31.6 bits (70), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 313 GQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
           G     C  C   F    +L +H R HT E+PY C+ C       + LR
Sbjct: 1   GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLR 49


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTH-MRLHSG 313
           F C +CT++F +  HL++H+  HT EKP+ C  C + F+    L  H  ++HSG
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56



 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQ----LAHLQKHHLVHTGE 286
           + C VC + F +  +LK H R+H  E+P+ C +C ++FT+    + H QK H  + GE
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRY 354
           + CEVC   F +  HLK H R HTNE+PY C  CN+ +
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40



 Score = 34.7 bits (78), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQ 328
           C  C + F+   +LK H R H+ +KPY C +C   FT+
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C+ C KSF Q + L  H ++HTGEKP
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C+ C   F Q   L  H+ +HT E+P
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           T EKP  C  C K F   S L +H  +H+G+KP
Sbjct: 8   TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           + C+ C K+F Q S L  H   H GE+P
Sbjct: 13  FRCDTCDKSFRQRSALNSHRMIHTGEKP 40


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E PF+CN C K+F+  AHL KH L+H GE P
Sbjct: 10  EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           T E P +C  C K FS +++L  H  +H+G+ P
Sbjct: 8   TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           + P+ C  C   F+   HL  H+ +H  E P
Sbjct: 10  EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++CN C KTF   ++L  H   H GE P
Sbjct: 13  FKCNECGKTFSHSAHLSKHQLIHAGENP 40


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PFQC  C K FTQ +HL  H  VHTGEKP
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ CE C  RFTQ  HL  H+R+HT E+P
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C  C KRF+  S+L +H R+H+G+KP
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++C  C K F Q S+L  H R H GE+P
Sbjct: 13  FQCEECGKRFTQNSHLHSHQRVHTGEKP 40


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K FTQ +HL +H  +HTGEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FTQ  HL  H+ +HT E+P
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F+  S+L  H  +H+G+KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S+L  H   H GE+P
Sbjct: 13  YKCNECGKVFTQNSHLARHRGIHTGEKP 40


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ERP +CN C KSF Q AHL +H  +HTGEKP
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E+PH+C  C K F  +++L  H R+H+G+KP
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           ++P+ C  C   F Q  HL  H+R+HT E+P
Sbjct: 10  ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++CN C K+F Q ++L  H R H GE+P
Sbjct: 13  HKCNECGKSFIQSAHLIQHQRIHTGEKP 40


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K FTQ +HL +H  +HTGEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FTQ  HL  H+ +HT E+P
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F+  S+L  H  +H+G+KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S+L  H   H GE+P
Sbjct: 13  YKCNECGKVFTQNSHLVRHRGIHTGEKP 40


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ CN C KSF Q +HL +H  +HTGEKP
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F Q  HL  H+R+HT E+P
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K F   S+L  H R+H+G+KP
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y CN C K+F Q S+L  H R H GE+P
Sbjct: 13  YICNECGKSFIQKSHLNRHRRIHTGEKP 40


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K FTQ +HL  H  +HTGEKP
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FTQ  HL  H R+HT E+P
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F+  S+L  H R+H+G+KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S+L  H R H GE+P
Sbjct: 13  YKCNECGKVFTQNSHLTNHWRIHTGEKP 40


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +P+QCN C K+F+Q + L +H  VHTGEKP
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           KP++C  C K FS TS L  H R+H+G+KP
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S L  H R H GE+P
Sbjct: 13  YQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           KPY C  C   F+Q   L  H+R+HT E+P
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K+F+Q + L +H  +HTGEKP
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K FS TS L  H R+H+G+KP
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S L  H R H GE+P
Sbjct: 13  YKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F+Q   L  H+R+HT E+P
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+ ++C++C K F+Q +HLQ H  VHTGEKP
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +K Y C+VC   F+Q  HL+ H+R+HT E+P
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EK ++C  C K FS +S+L+TH R+H+G+KP
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C+VC K F Q S+L+ H R H GE+P
Sbjct: 13  YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C+IC KSF   + L +H +VHT EKP
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C++C   F     L  H  +HT E+P
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C  C K F   S L  H  +H+ +KP
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
           From Human Krueppel-Like Factor 10
          Length = 72

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 10/68 (14%)

Query: 246 SNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSN 303
           S ++ H+ +H G        C K++ + +HL+ H   HTGEKP  C +  C++RF+ +  
Sbjct: 13  SRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64

Query: 304 LKTHMRLH 311
           L  H R H
Sbjct: 65  LSRHRRTH 72



 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVH 283
           C KT+ + S+LK H RTH GE+PF C+   C + F +   L +H   H
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 294 CQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLH 339
           C K +  +S+LK H R H+G+KP+ C    C  RF +   L  H+R H
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 36.2 bits (82), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 10/56 (17%)

Query: 301 TSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC--KGCNKRY 354
           +S +++H+  H G        C   + +  HLK H R HT E+P+ C  KGC +R+
Sbjct: 12  SSRIRSHICSHPG--------CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C  C KS+ Q  HL +H  VHTGEKP
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C  C   + Q VHL  H+R+HT E+P
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C  C K ++   +L  H R+H+G+KP
Sbjct: 10  EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++C  C K++ Q  +L  H R H GE+P
Sbjct: 13  FKCGECGKSYNQRVHLTQHQRVHTGEKP 40


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K FTQ +HL +H  VHTG KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 36.6 bits (83), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FTQ  HL  H+R+HT  +P
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 35.0 bits (79), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F+  S+L  H R+H+G KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S+L  H R H G +P
Sbjct: 13  YKCNECGKVFTQNSHLARHRRVHTGGKP 40


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ++P++CN C K FTQ +HL +H  +HTGEKP
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FTQ  HL  H+ +HT E+P
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +KP++C  C K F+  S+L  H  +H+G+KP
Sbjct: 10  KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S+L  H   H GE+P
Sbjct: 13  YKCNECGKVFTQNSHLARHRGIHTGEKP 40


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ERP+ C +C K+FT  ++L KH  +HTGEKP
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E+P+ C  C K F+  SNL  H ++H+G+KP
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           ++PY C VC   FT   +L  H+++HT E+P
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C VC K F   SNL  H + H GE+P
Sbjct: 13  YICTVCGKAFTDRSNLIKHQKIHTGEKP 40


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C+IC KSFT+ + L  H  +HTGEKP
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C K F+  S L  H ++H+G+KP
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C +C   FT+   L +H+++HT E+P
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC++C K+F + S L VH + H GE+P
Sbjct: 13  YECSICGKSFTKKSQLHVHQQIHTGEKP 40


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C K+F+Q  HL +H  VHTGEKP
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C K FS T++L  H R+H+G+KP
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+ C   F+Q  HL  H+R+HT E+P
Sbjct: 10  EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC  C K F Q ++L  H R H GE+P
Sbjct: 13  YECKECGKAFSQTTHLIQHQRVHTGEKP 40


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP EC  C K FS +S L TH R+H+G+KP
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C  C KSF+  + L  H  +HTGEKP
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C  C   F+    L  H+R+HT E+P
Sbjct: 10  EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           +EC  C K+F   S L  H R H GE+P
Sbjct: 13  FECAECGKSFSISSQLATHQRIHTGEKP 40


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C K+F Q A+L +H  +HTGEKP
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K F+  +NL  H R+H+G+KP
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F Q  +L  H+R+HT E+P
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C  C K F Q +NL  H R H GE+P
Sbjct: 13  YRCGECGKAFAQKANLTQHQRIHTGEKP 40


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP EC  CQK F++ SNL  H R H+G+KP
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           +EC+ C K F   SNL VH RTH GE+P
Sbjct: 13  FECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C+ C K+F   ++L  H   HTGEKP
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C  C   F    +L +H+R HT E+P
Sbjct: 10  EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K FTQ +HL  H  +HTG KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 35.8 bits (81), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FTQ  HL  H+R+HT  +P
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 35.8 bits (81), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F+  S+L  H R+H+G KP
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F Q S+L  H R H G +P
Sbjct: 13  YKCNECGKVFTQNSHLANHQRIHTGVKP 40


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C  C K FTQ + L  H  VHTGEKP
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ CE C  RFTQ   L  H+R+HT E+P
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C  C KRF+  S L +H R+H+G+KP
Sbjct: 10  EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++C  C K F Q S L  H R H GE+P
Sbjct: 13  FKCEECGKRFTQNSQLHSHQRVHTGEKP 40


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C +C K+F   +HL +HH VH+GE+P
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 33.1 bits (74), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+VC   F    HL  H  +H+ ERP
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F  +S+L  H  +HSG++P
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C VC K F   S+L  H   H+GERP
Sbjct: 13  YKCQVCGKAFRVSSHLVQHHSVHSGERP 40


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C+ C K F + +HL +H L+HTGEKP
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F   S+L  H  +H+G+KP
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F +  HL  H+ +HT E+P
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C++C K+F+  A L +H  VH+GEKP
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C+K FS  ++L  H R+HSG+KP
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 36.2 bits (82), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+VC   F+ +  L  H+R+H+ E+P
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 35.8 bits (81), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC+VC K F   ++L  H R H+GE+P
Sbjct: 13  YECDVCRKAFSHHASLTQHQRVHSGEKP 40


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C   F Q+AHL+ H L+HTG  P
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY CE C ARF Q  HL+ H  +HT   P
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C  RF   ++L+ H+ +H+G  P
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C  C   F Q+++L+ H+  H G  P
Sbjct: 12  YKCETCGARFVQVAHLRAHVLIHTGSGP 39


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C  C K+F Q  HL  H  +HTGEKP
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C+ C   F Q +HL  H R+HT E+P
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C  C K F    +L +H+R+H+G+KP
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++C  C K F Q  +L  HLR H GE+P
Sbjct: 13  FKCKECGKAFRQNIHLASHLRIHTGEKP 40


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
           Zinc Finger Protein 32
          Length = 41

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SG+KPY C+ C   F+Q   L +H+RLHT   P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +GE+P+QC  C KSF+Q   L  H  +HTG  P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 38.5 bits (88), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +GEKP++C  C K FS   +L  H RLH+G  P
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           G+  Y+C  C K+F Q  +L VH R H G  P
Sbjct: 7   GEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 23/33 (69%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +G++P  CN C K+F Q + L KH  +H+GEKP
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 35.0 bits (79), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +G+KP  C  C K F  +S L  H R+HSG+KP
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 228 DGKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
            GK    CN C KTF Q S L  H R H+GE+P
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 33.1 bits (74), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SG+KP  C  C   F Q   L  H+R+H+ E+P
Sbjct: 6   SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K F+  SNL TH ++H+G+KP
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C K+FT  ++L  H  +HTGEKP
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FT   +L  H+++HT E+P
Sbjct: 10  EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C  C K F   SNL  H + H GE+P
Sbjct: 13  YRCAECGKAFTDRSNLFTHQKIHTGEKP 40


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K FSS S L  HMR HSG+KP
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 35.4 bits (80), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C+ C K F   S L +H+RTH+GE+P
Sbjct: 13  YGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ C+ C K+F+  ++L  H   H+GEKP
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 32.7 bits (73), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F+   +L +H R H+ E+P
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K+F   ++L  H ++HTGEKP
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F + SNL TH  +H+G+KP
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F   SNL  H   H GE+P
Sbjct: 13  YKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 31.2 bits (69), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F  + +L  H+ +HT E+P
Sbjct: 10  EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ CN C K+F+Q + L  H   HTGEKP
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y CN C KTF Q S L  H RTH GE+P
Sbjct: 13  YGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K FS  S L  H R H+G+KP
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F+Q   L  H+R HT E+P
Sbjct: 10  EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
           Zinc Finger Protein 473
          Length = 42

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           SG+KPY C+ C   FTQ   L +H+R+HT E
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           +GE+P+ C  C K+FTQ + L  H  VHTGE
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           +GEKP+ C  C K F+ +S L  H R+H+G+
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 228 DGKMHYECNVCYKTFGQLSNLKVHLRTHNGE 258
            G+  Y C  C K F Q S L +H R H GE
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE--CIYCQKRFSSTSNLKTHMR 309
           RTH+GE+P++C IC   FTQ   ++ H L    E   +  C +C    +  S+L  H+R
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLH 335
           R HSG+KPY C +C ARFTQ   +K+H
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMH 34


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K F   ++L +H  +HTGEKP
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F   S L  H R+H+G+KP
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F    +L  H+R+HT E+P
Sbjct: 10  EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F   S L  H R H GE+P
Sbjct: 13  YKCNECGKVFRHNSYLSRHQRIHTGEKP 40


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           ++P++C  C K+F Q+ HL +H  VHTGE+
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +KPY C+ C   F Q  HL  HKR+HT ER
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 35.0 bits (79), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
           YEC  C KTF Q+ +L  H R H GER
Sbjct: 13  YECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           +KP+EC  C+K F    +L  H R+H+G++
Sbjct: 10  KKPYECKECRKTFIQIGHLNQHKRVHTGER 39


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKPHEC  C K FS  S L  H R+H+G+ P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 32.3 bits (72), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P +C  C KSF+  + L  H  +HTGE P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C  C   F+    L +H+R+HT E P
Sbjct: 10  EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           +EC  C K+F   S L VH R H GE P
Sbjct: 13  HECRECGKSFSFNSQLIVHQRIHTGENP 40


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C  C K F++ + L  HH +HTGEKP
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C+ C K FS  S L  H +LH+G+KP
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C  C   F++   L +H +LHT E+P
Sbjct: 10  EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++C  C K F + S L VH + H GE+P
Sbjct: 13  FKCVECGKGFSRRSALNVHHKLHTGEKP 40


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ C  C K+F   + LQ+H  +HTGEKP
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 36.2 bits (82), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY+CE C   F     L+ H+R+HT E+P
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K F   S L+ H R+H+G+KP
Sbjct: 10  EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C  C K F   S L+ H R H GE+P
Sbjct: 13  YNCEECGKAFIHDSQLQEHQRIHTGEKP 40


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C K FS   +L  H R+HSG+KP
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 36.2 bits (82), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C++C K+F+    L  H  +H+G+KP
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 35.8 bits (81), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC+VC K F    +L VH R H+G++P
Sbjct: 13  YECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C VC   F+    L +H+R+H+ ++P
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           +GE+P+ CN C K F+  ++L  H  +HTGEK
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           +GEKP+ C  C K FSS S L  H R+H+G+K
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 37.4 bits (85), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           SG+KPY C  C   F+   +L +H+R+HT E+
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGER 259
           G+  Y CN C K F   S L VH R H GE+
Sbjct: 7   GEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ C+ C K+F   A L +H  +HTGEKP
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C YC K F  ++ L  H R+H+G+KP
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+ C   F     L  H+R+HT E+P
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C+ C K FG  + L  H R H GE+P
Sbjct: 13  YVCDYCGKAFGLSAELVRHQRIHTGEKP 40


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +GE+P+ CN C K+FT  + L  H  VHTG KP
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 35.4 bits (80), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SG+KPY C  C   FT    L +HK +HT  +P
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +GEKP+ C  C K F+  S L  H  +H+G KP
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 228 DGKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
            G+  Y CN C K F   S L VH   H G +P
Sbjct: 6   SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C K FS  S+L TH  +H+G+KP
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K+F+  + L  H  +HTG+KP
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 31.6 bits (70), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YECN C K F   S+L  H   H G++P
Sbjct: 13  YECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F+    L  H+ +HT ++P
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +P+ CN C K+F+  + L  H ++HTGEKP
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           KP+ C  C K FS  S+L TH  +H+G+KP
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           KPY C  C   F+ Y  L  H+ +HT E+P
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y CN C K F   S+L  H   H GE+P
Sbjct: 13  YMCNECGKAFSVYSSLTTHQVIHTGEKP 40


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C K F     L  HH+VHTGEKP
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F    +L TH  +H+G+KP
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40



 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY CE C   F     L  H  +HT E+P
Sbjct: 10  EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           EKP+EC  CQK F++ SNL  H R H+G+
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 17/26 (65%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGE 258
           YECN C K F   SNL VH RTH GE
Sbjct: 13  YECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           E+P++CN C K+F   ++L  H   HTGE
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           +KPY C  C   F    +L +H+R HT E
Sbjct: 10  EKPYECNECQKAFNTKSNLMVHQRTHTGE 38


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 230 KMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           K  ++CN C KTF Q S+L VH R H GE+P
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ++ F+CN C K+FTQ + L  H  +HTGEKP
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +K + C  C   FTQ   L +H+R+HT E+P
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +K  +C  C+K F+ +S+L  H R+H+G+KP
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C++C KSF   + L  H  +HTGEKP
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C+VC+K+F   S+L VH R H GE+P
Sbjct: 13  YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F   S+L  H R+H+G+KP
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+VC   F     L +H+R+HT E+P
Sbjct: 10  EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           +KP EC +C K F +  NL TH R+H+G+K
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 34.3 bits (77), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           ++PF+C  C KSF    +L  H  +HTGEK
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           QKP+ C  C   F    +L  H+R+HT E+
Sbjct: 10  QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
           +EC  C K+F    NL  H R H GE+
Sbjct: 13  FECTHCGKSFRAKGNLVTHQRIHTGEK 39


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
           Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSG 313
           C K+F +   L+ H   HT + P+EC +  C KRFS  S LK H ++H+G
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 32.7 bits (73), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQC--NICTKSFTQLAHLQKHHLVHTG 285
           C K F + + LKVH  +H  + P++C    C K F+  + L++H  VH G
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 294 CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCK 348
           C K F   + LK H   H+ Q PY C  E C  RF+    LK H+++H     Y CK
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62



 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 318 HCEVCPARFTQYVHLKLHKRLHTNERPYVC--KGCNKRY 354
           H E C   F ++  LK+H+  HT + PY C  +GC+KR+
Sbjct: 5   HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 43


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +CI C K FS    L  H R+H+G+KP
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF C  C K+F+    L +H  +HTGEKP
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KP+ C  C   F+ ++ L  H+R+HT E+P
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
           Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 266 CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSG 313
           C K+F +   L+ H   HT + P+EC +  C KRFS  S LK H ++H+G
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 32.7 bits (73), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQC--NICTKSFTQLAHLQKHHLVHTG 285
           C K F + + LKVH  +H  + P++C    C K F+  + L++H  VH G
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58



 Score = 32.3 bits (72), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 294 CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCK 348
           C K F   + LK H   H+ Q PY C  E C  RF+    LK H+++H     Y CK
Sbjct: 9   CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62



 Score = 31.2 bits (69), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 318 HCEVCPARFTQYVHLKLHKRLHTNERPYVC--KGCNKRY 354
           H E C   F ++  LK+H+  HT + PY C  +GC+KR+
Sbjct: 5   HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF 43


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +GEK HEC  C+K FS  S L  H R+H+G+ P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38



 Score = 32.3 bits (72), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           G+  +EC+ C KTF   S L +H R H GE P
Sbjct: 7   GEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38



 Score = 32.3 bits (72), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SG+K + C  C   F+ +  L +H+R+HT E P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38



 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +GE+  +C+ C K+F+  + L  H  +HTGE P
Sbjct: 6   SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C+ C K F   S+   H RLH+GQ+P
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 31.6 bits (70), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C K+F   +   +H  +HTG++P
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 31.2 bits (69), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F        H+RLHT +RP
Sbjct: 10  EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C  C K FG  S+   H R H G+RP
Sbjct: 13  YKCMECGKAFGDNSSCTQHQRLHTGQRP 40


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.7 bits (86), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 232 HYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           HYEC+ C K F Q S L +H R H GE+P
Sbjct: 12  HYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 34.3 bits (77), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ER ++C+ C K+F Q + L  H  +H GEKP
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 32.0 bits (71), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E+ +EC  C K F   S L  H R+H G+KP
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           ++ Y C  C   F Q   L +H+R+H  E+P
Sbjct: 10  ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ C  C KSF   + L KH  VH+GEKP
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 35.0 bits (79), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K F   S L  H R+HSG+KP
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY+C+ C   F     L  H+R+H+ E+P
Sbjct: 10  EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C  C K+F   S L  H R H+GE+P
Sbjct: 13  YNCKECGKSFRWASCLLKHQRVHSGEKP 40


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
           Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 37.4 bits (85), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           KP +C  CQ++FS + +LKTH R H+G+K
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 35.4 bits (80), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           +PFQC  C + F++  HL+ H   HTGEK
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           KP+ C+ C  +F++  HLK H R HT E+
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
           ++C  C + F +  +LK H RTH GE+
Sbjct: 3   FQCKTCQRKFSRSDHLKTHTRTHTGEK 29


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +G KP+ C  C K F S S L  HMR H+G+KP
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 35.4 bits (80), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SG KPY C  C   F    +L +H R HT E+P
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 34.7 bits (78), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C+ C K F   S L +H+RTH GE+P
Sbjct: 11  YGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 34.3 bits (77), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +G +P+ C+ C K+F   ++L  H   HTGEKP
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           E+P+ CN+C K+F   AHL +H  VHT E
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38



 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           +KPY C VC   F    HL  H R+HT E
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38



 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHS 312
           EKP+ C  C K F  +++L  H+R+H+
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHT 36



 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGE 258
           Y CNVC K F   ++L  HLR H  E
Sbjct: 13  YSCNVCGKAFVLSAHLNQHLRVHTQE 38


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.0 bits (84), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 232 HYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           HYEC+ C K F + S L +H R H GE+P
Sbjct: 12  HYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ER ++C+ C K+F + + L  H  +HTGEKP
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E+ +EC  C K F+  S L  H R+H+G+KP
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           ++ Y C  C   F +   L +H+R+HT E+P
Sbjct: 10  ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C+ C KSF + + L  H  +HTGE P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 35.4 bits (80), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+EC  C K F   S L  H R+H+G+ P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F +   L +H+R+HT E P
Sbjct: 10  EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC+ C K+F + S L VH R H GE P
Sbjct: 13  YECSDCGKSFIKKSQLHVHQRIHTGENP 40


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+ ++CN C K F++ + L +H  +HTGEKP
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EK ++C  C K FS  S L  H ++H+G+KP
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F + S L  H + H GE+P
Sbjct: 13  YKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +K Y C  C   F++   L  H+++HT E+P
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++CN C K+F   + L  H   H+GEKP
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40



 Score = 35.0 bits (79), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+CN C K F   S+L +H  TH+GE+P
Sbjct: 13  YKCNECGKAFRARSSLAIHQATHSGEKP 40



 Score = 34.7 bits (78), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F + S+L  H   HSG+KP
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40



 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F     L +H+  H+ E+P
Sbjct: 10  EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 37.0 bits (84), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           T EKP++C  C K F + SNL TH  +H+G+K
Sbjct: 8   TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 35.8 bits (81), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           E+P++C  C K+F   ++L  H ++HTGEK
Sbjct: 10  EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +KPY C  C   F    +L  H+ +HT E+
Sbjct: 10  EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           ++P+ECI C K F + S+L  H R H+G+KP
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +RP++C  C K+F   + L  H   HTGEKP
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC  C K F   S+L  H R+H GE+P
Sbjct: 13  YECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           Q+PY C  C   F     L  H+R HT E+P
Sbjct: 10  QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 36.6 bits (83), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SGQ+ Y C+ C   F Q   L LH+R+HT   P
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 34.7 bits (78), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +G+R ++C  C KSF Q   L  H  +HTG  P
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           G+  YEC  C K+F Q  +L +H R H G  P
Sbjct: 7   GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +G++ +EC  C K F    +L  H R+H+G  P
Sbjct: 6   SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
           Protein Zfy: 2d Nmr Structure Of An Even Finger And
           Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 36.6 bits (83), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRL-HSGQK 315
           K ++C YC+KRF+ +SNLKTH++  HS +K
Sbjct: 1   KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30



 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 233 YECNVCYKTFGQLSNLKVHLRT-HNGER 259
           Y+C  C K F   SNLK H++T H+ E+
Sbjct: 3   YQCQYCEKRFADSSNLKTHIKTKHSKEK 30


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           ERPF+CN C K F + +HL  H  +H+ EK
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
           ++CN C K FG+ S+L  HLR H+ E+
Sbjct: 13  FKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 31.2 bits (69), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           E+P +C  C K F   S+L  H+RLHS +K
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           ++P+ C  C   F +  HL  H RLH+ E+
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 36.2 bits (82), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 288 PHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           P +C  C K+F+++ NLK H+R+HSG+K
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 31.2 bits (69), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 260 PFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           P +C  C K FT   +L++H  +H+GEK
Sbjct: 2   PLKCRECGKQFTTSGNLKRHLRIHSGEK 29



 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 234 ECNVCYKTFGQLSNLKVHLRTHNGER 259
           +C  C K F    NLK HLR H+GE+
Sbjct: 4   KCRECGKQFTTSGNLKRHLRIHSGEK 29


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.2 bits (82), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY CE C   +    +L +H+++HT ERP
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 34.7 bits (78), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C  C K +    +L  H  VHTGE+P
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 34.3 bits (77), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K ++S  NL  H ++H+G++P
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C  C K +    NL +H + H GERP
Sbjct: 13  YKCEKCGKGYNSKFNLDMHQKVHTGERP 40


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
           Zinc Finger Protein 278
          Length = 48

 Score = 36.2 bits (82), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
           +   C IC K F  + HL +H L H+GEKP+
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41



 Score = 32.3 bits (72), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
           +K   CE+C   F    HL  HK  H+ E+PY
Sbjct: 10  RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 35.8 bits (81), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGE 258
           G+  YEC  C K FG  S L +H RTH GE
Sbjct: 7   GEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           +GEKP+EC  C K F   S L  H R H+G+
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           SG+KPY C  C   F     L +H+R HT E
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 33.1 bits (74), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           +GE+P++C  C K+F   + L  H   HTGE
Sbjct: 6   SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 35.8 bits (81), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +GE+PF C+ C K+F+  ++L  H   H  EKP
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 34.3 bits (77), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           +GEKP  C  C+K FSS S L  H + H+ +KP
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           SG+KP+ C  C   F+   +L +H++ H  E+P
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           G+  + C+ C K F   S L VH +TH  E+P
Sbjct: 7   GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
           Zinc Finger From The Human Enhancer Binding Protein
           Mbp-1
          Length = 57

 Score = 35.8 bits (81), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 23/47 (48%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKH 279
           Y C  C     + S LK H+RTH   RP+ C  C  SF    +L KH
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48



 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMR 309
           + C  C     + + L+KH   HT  +P+ C YC   F +  NL  HM+
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50



 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 19/35 (54%)

Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCN 351
           Y CE C  R  +   LK H R HT+ RPY C  CN
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCN 36



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARF 326
           C  C  R    S LK H+R H+  +PYHC  C   F
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSF 39


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 484
          Length = 42

 Score = 35.4 bits (80), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           +GE+P+ C  C K+F + +H   H  +HTGE
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 35.0 bits (79), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           SG+KPY C  C   F +  H   H+R+HT E
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           +GEKP+ C  C K F   S+  TH R+H+G+
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 35.4 bits (80), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           +GEK HEC  C K FS  S L  H R+H+G+
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           +GE+  +CN C K+F+  + L  H  +HTGE
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36



 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGE 258
           G+  +ECN C K F   S L +H R H GE
Sbjct: 7   GEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           SG+K + C  C   F+    L +H+R+HT E
Sbjct: 6   SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 35.4 bits (80), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           SGQKPY C  C   F     L +H+R+HT E
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 33.5 bits (75), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           +G++P+ CN C K+F   + L  H  +HTGE
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 32.7 bits (73), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGE 258
           G+  Y CN C K FG  S L +H R H GE
Sbjct: 7   GQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 31.2 bits (69), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           +G+KP+ C  C K F   S L  H R+H+G+
Sbjct: 6   SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 35.4 bits (80), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C+ C K+F +  HL +H  +HTG +P
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 34.7 bits (78), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   F ++ HL  H+R+HT  RP
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 31.6 bits (70), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP++C  C K F   ++L  H R+H+G +P
Sbjct: 10  EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y+C+ C K F + ++L  H R H G RP
Sbjct: 13  YKCSECGKAFHRHTHLNEHRRIHTGYRP 40


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           E+P++C+ C KSFT  + L+ H   HTGE+
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39



 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +KPY C  C   FT    L++H++ HT ER
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39



 Score = 31.6 bits (70), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
           Y+C+ C K+F   S L++H + H GER
Sbjct: 13  YKCSDCGKSFTWKSRLRIHQKCHTGER 39



 Score = 31.2 bits (69), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           EKP++C  C K F+  S L+ H + H+G++
Sbjct: 10  EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 35.0 bits (79), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 23/29 (79%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           KP+ CI+CQ++F+    L+ H+R+H+G+K
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGEK 30



 Score = 28.1 bits (61), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           +P+ C  C + F     LQ+H  +HTGEK
Sbjct: 2   KPYVCIHCQRQFADPGALQRHVRIHTGEK 30


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
          Length = 66

 Score = 35.0 bits (79), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 254 THNGERPFQCNICTKSFTQLAHLQKHHLV--HTGEKPHECIYCQKRFSSTSNLKTHMRL 310
           T  GE  ++C +C++ +T +++  +H++       K + C +C K F+   N+  H+++
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62



 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 227 KDGKMHYECNVCYKTFGQLSNLKVHLRTHNGE--RPFQCNICTKSFTQLAHLQKH 279
           K+G+  Y C VC + +  +SN   H  T +    + + C  C K FT+  ++  H
Sbjct: 5   KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
           Zinc Finger Protein 32
          Length = 42

 Score = 35.0 bits (79), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K FS   +L  H+R+H+G  P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 34.7 bits (78), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P++C+ C K+F+Q   L  H  VHTG  P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C+ C K F Q  +L VH+R H G  P
Sbjct: 12  YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C+ C   F+Q   L +H R+HT   P
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.0 bits (79), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           F+C  C K+FT+ + L  H  +HTGEKP
Sbjct: 13  FECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 34.3 bits (77), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 232 HYECNVCYKTFGQLSNLKVHLRTHNGERP 260
           H+EC  C K F + S L +H + H GE+P
Sbjct: 12  HFECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 290 ECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EC  C K F+  S L  H ++H+G+KP
Sbjct: 14  ECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           K + C  C   FT+   L +H+++HT E+P
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 34.7 bits (78), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 262 QCNICTKSFTQLAHLQKHHLVHTGEKP 288
           QC+ C + FT  +HL +H  +HTGEKP
Sbjct: 14  QCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           K H+C  C + F+  S+L  H R+H+G+KP
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           K + C  C   FT   HL  H+R+HT E+P
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 34.7 bits (78), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C  RF     LK+H+R+H+G  P
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 34.7 bits (78), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY CE+C  RF     LK H R+HT   P
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 31.6 bits (70), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ C IC   F  L  L+ H  +HTG  P
Sbjct: 9   EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C +C   F  L  LK HLR H G  P
Sbjct: 12  YPCEICGTRFRHLQTLKSHLRIHTGSGP 39


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 34.7 bits (78), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +P+QC+ C KSF+    L +H + HT EKP
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKP 40


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
           Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 34.3 bits (77), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 248 LKVHLRTHNGERPFQCNICTKSFTQLAHLQKH 279
           L++H R H  +RPF+CN C+    Q ++L KH
Sbjct: 25  LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56



 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 274 AHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           A L+ H  +H  ++P +C YC       SNL  HM+   G 
Sbjct: 23  AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP+ C  C K F+  SNL  H ++H+ QKP
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+P+ C  C K+FT  ++L KH  +HT +KP
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +KPY C  C   FT   +L  H+++HT ++P
Sbjct: 10  EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E PF C+ C K FT   +L  H  +HTGE+P
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           + P+ C  C   FT   +L +H+++HT ERP
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 31.2 bits (69), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E P  C  C K F+  +NL  H ++H+G++P
Sbjct: 10  ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           + C+ C K F   +NL +H + H GERP
Sbjct: 13  FICSECGKVFTHKTNLIIHQKIHTGERP 40


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLH-KRLHT-NERP--YVCKGCNKRYI 355
           R H+G+KPY C  C   F Q   L +H KR H  N  P  +VC  C K + 
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58



 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 253 RTHNGERPFQCNICTKSFTQL----AHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTH 307
           RTH GE+P+ C+ C K+F Q      H +++H  +       C  C K F+  + +  H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 282 VHTGEKPHECIYCQKRFSSTSNLKTHM-RLHSGQ---KPYHCEVCPARFTQYVHLKLH 335
            HTGEKP+ C +C K F     L  H  R H        + C  C   FT+   +  H
Sbjct: 9   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGER----PFQCNICTKSFTQLAHLQKH 279
           G+  Y C+ C KTF Q   L +H + ++        F C+ C K+FT+   + +H
Sbjct: 12  GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           KP +C+ C K F+  S+L  H+R H+G+K
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 32.7 bits (73), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           +P QC +C K+FTQ + L  H   HTGEK
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 234 ECNVCYKTFGQLSNLKVHLRTHNGER 259
           +C +C K F Q S+L  H+R H GE+
Sbjct: 4   QCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           KP  C +C   FTQ   L  H R HT E+
Sbjct: 1   KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 210 NSQGSRGYRSLPYPLKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGE 258
            S GS G R  PY           EC+ C K F + S L VH RTH+GE
Sbjct: 1   GSSGSSGTREKPY-----------ECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           T EKP+EC  C K F   S L  H R HSG+
Sbjct: 8   TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           E+P++C+ C K+F + + L  H   H+GE
Sbjct: 10  EKPYECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           +KPY C  C   F +   L +H+R H+ E
Sbjct: 10  EKPYECSECGKAFIRNSQLIVHQRTHSGE 38


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E P+EC  C K FS    L +H R H+G+KP
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E P++C+ C K+F++   L  H   H GEKP
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 31.6 bits (70), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           YEC+ C K F +   L  H RTH GE+P
Sbjct: 13  YECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           + PY C  C   F++   L  H+R H  E+P
Sbjct: 10  ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           ER  +C+ C K F Q ++  +H  +HTGEKP
Sbjct: 10  ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           E+ H C  C K F   SN   H R+H+G+KP
Sbjct: 10  ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40



 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           + C+ C K F Q SN   H R H GE+P
Sbjct: 13  HRCSDCGKFFLQASNFIQHRRIHTGEKP 40


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           E+P++C+ C K+FT+ + L  H   HTGE+
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39



 Score = 31.6 bits (70), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +KPY C  C   FT+   L +H++ HT ER
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39



 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
           Y+C+ C K F + S L +H ++H GER
Sbjct: 13  YKCSDCGKAFTRKSGLHIHQQSHTGER 39



 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           EKP++C  C K F+  S L  H + H+G++
Sbjct: 10  EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 260 PFQCNICTKSFTQLAHLQKHHLVHTGEK 287
            F C +CT++F +  HL++H+  HT EK
Sbjct: 2   SFVCEVCTRAFARQEHLKRHYRSHTNEK 29



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 319 CEVCPARFTQYVHLKLHKRLHTNER 343
           CEVC   F +  HLK H R HTNE+
Sbjct: 5   CEVCTRAFARQEHLKRHYRSHTNEK 29


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 2)
          Length = 31

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 259 RPFQCNI--CTKSFTQLAHLQKHHLVHTGEK 287
           RPF C    C K FT+   LQ+H   HTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 287 KPHECI--YCQKRFSSTSNLKTHMRLHSGQK 315
           +P  C   YC KRF+ +  L+ H R H+G+K
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 54

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 315 KPYHCEVCPARFTQYVHLKLH-KRLHTNERPYVCK 348
           KPY C+ C   F++  HL  H K++HT+ERP+ C+
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45



 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 259 RPFQCNICTKSFTQLAHLQKH-HLVHTGEKPHEC 291
           +P+ C  C K F++  HL  H   VHT E+PH+C
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44



 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMR-LHSGQKPYHCEV 321
           KP+ C  C K FS   +L  H++ +H+ ++P+ C+V
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           +GE P+EC  C K F+    L +H R H+G+
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 32.0 bits (71), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 257 GERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           GE P++C+ C K+F +   L  H   H GE
Sbjct: 7   GENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGE 258
           G+  YEC+ C K F +   L  H RTH GE
Sbjct: 7   GENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
           SG+ PY C  C   F +   L  H+R H  E
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHAGE 36


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTG 285
           +GE+P+ C+ C K+FT  + L  H  +HTG
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35



 Score = 31.2 bits (69), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTN 341
           SG+KPY C  C   FT    L +H+ +HT 
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSG 313
           +GEKP+ C  C K F+  S L  H  +H+G
Sbjct: 6   SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +KPY CE C   + + ++L +H+R+H  E+
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           E+P++C  C K + +  +L  H  VH GEK
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 31.2 bits (69), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           EKP++C  C K ++   NL  H R+H G+K
Sbjct: 10  EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+ + C  C KSF++   L KH  +H+GEKP
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 31.6 bits (70), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EK + C  C K FS    L  H RLHSG+KP
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +K Y+C+ C   F++   L  H+RLH+ E+P
Sbjct: 10  EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EKP +C  C K F + S   +H R HSG+KP
Sbjct: 10  EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 32.0 bits (71), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+PF+C  C K F   +    H   H+GEKP
Sbjct: 10  EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
           Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 294 CQKRFSSTSNLKTHMRL-HSGQKPYHCE--VCPARFTQYVHLKLHKRLHTNERPYVCK 348
           C + FS+   L  H +  H  QK + C    C   F    HLK H +LH++ R Y+C+
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72



 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 266 CTKSFTQLAHLQKHH-LVHTGEKPHECI--YCQKRFSSTSNLKTHMRLHSGQKPYHCEV 321
           C + F+   +L  H    H  +K   C    C K F+   +LK HM+LHS  + Y CE 
Sbjct: 15  CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           EKP++C+ C K +    +L  H R+H+G+K
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39



 Score = 31.6 bits (70), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           E+P++C  C K + +   L  H  VHTGEK
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39



 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
           +KPY C  C   + + + L  H+R+HT E+
Sbjct: 10  EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 32.3 bits (72), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           E+ ++C  C   F+Q + L+ H  VH GEKP
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           +K + C  C   F+Q   L+LH+ +H  E+P
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           EK  +C  C   FS  S+L+ H  +H G+KP
Sbjct: 10  EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           ++C  C   F Q S+L++H   H GE+P
Sbjct: 13  WKCRECDMCFSQASSLRLHQNVHVGEKP 40


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
           Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 32.3 bits (72), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKP 316
           EKP  C +  C  RFS +  L  H R HSG KP
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 32.3 bits (72), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           PY C  C   F+  + L +H+R+HT E+P
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40



 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 288 PHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           P++C  C+K FS    L  H R+H+ +KP
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 260 PFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           P++C+ C KSF+    L  H  +HT EKP
Sbjct: 12  PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 32.3 bits (72), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMR-LHSGQKP 316
           +KP+ECI C K F   ++L  H R  H+G+KP
Sbjct: 10  KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41



 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 258 ERPFQCNICTKSFTQLAHLQKH-HLVHTGEKP 288
           ++P++C  C K+F Q   L +H    HTGEKP
Sbjct: 10  KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.3 bits (72), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           E P+EC  C K FS    L +H + HSGQ
Sbjct: 10  ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38


>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
           Fog-1
          Length = 35

 Score = 32.3 bits (72), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHT 284
           +G+RPF C IC  +FT  A+  +H  VHT
Sbjct: 3   SGKRPFVCRICLSAFTTKANCARHLKVHT 31


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
           Y C+ C KTF   S L VH R+H G +P
Sbjct: 13  YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40



 Score = 31.6 bits (70), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 17/30 (56%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
           KP+ C  C K FS  S L  H R H+G KP
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40



 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
           KPY C  C   F+    L +H+R HT  +P
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40



 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
           +P+ C+ C K+F+  + L  H   HTG KP
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 32.0 bits (71), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 260 PFQCNICTKSFTQLAHLQKHHLVHTGEK 287
            F C +CT++F +  +L++H+  HT EK
Sbjct: 2   SFVCEVCTRAFARQEYLKRHYRSHTNEK 29



 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 319 CEVCPARFTQYVHLKLHKRLHTNER 343
           CEVC   F +  +LK H R HTNE+
Sbjct: 5   CEVCTRAFARQEYLKRHYRSHTNEK 29


>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           171- 203) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           EK H C  C K F   S L+ H R+H G+K
Sbjct: 10  EKSHTCDECGKNFCYISALRIHQRVHMGEK 39



 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 235 CNVCYKTFGQLSNLKVHLRTHNGER 259
           C+ C K F  +S L++H R H GE+
Sbjct: 15  CDECGKNFCYISALRIHQRVHMGEK 39



 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           E+   C+ C K+F  ++ L+ H  VH GEK
Sbjct: 10  EKSHTCDECGKNFCYISALRIHQRVHMGEK 39


>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
           Sequence Taken From The Third Zinc Finger Domain Of The
           Human Transcriptional Repressor Protein Yy1 (Ying And
           Yang 1, A Delta Transcription Factor), Nmr, 34
           Structures
          Length = 28

 Score = 31.6 bits (70), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 288 PHECIY--CQKRFSSTSNLKTHMRLHSG 313
           P +C +  C KRFS   NLKTH+++H+G
Sbjct: 1   PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 45

 Score = 31.2 bits (69), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTN 341
           SG+KPY C VC  RF +   +  H R H  
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35



 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSG 313
           +GEKP+ C  C  RF     +  H+R H G
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35


>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           315- 345) Of Human Zinc Finger Protein 473
          Length = 44

 Score = 31.2 bits (69), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 261 FQCNICTKSFTQLAHLQKHHLVHT 284
           + CN C K+FT++ HL +H  +HT
Sbjct: 13  YNCNECGKAFTRIFHLTRHQKIHT 36


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
           +GEKP+ C  C++ FS  + L  H ++H+
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHT 340
           SG+KPY C  C   F+    L  H+++HT
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34



 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHT 284
           +GE+P+ C  C ++F+    L +H  +HT
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMHT 34


>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
           Substituted For The Central Aromatic Residue
          Length = 30

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRL-HSGQK 315
           K ++C YC+ R + +SNLKTH++  HS +K
Sbjct: 1   KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30


>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 1)
          Length = 37

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 238 CYKTFGQLSNLKVHLRTHNGER 259
           C K +G+ S+L+ HLR H GER
Sbjct: 16  CGKVYGKTSHLRAHLRWHTGER 37


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGE 258
           Y CN C K F   S L +H RTH GE
Sbjct: 13  YVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 29.3 bits (64), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGE 286
           +P+ CN C K+F   ++L  H   HTGE
Sbjct: 11  KPYVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
           KP+ C  C K F S S L  H R H+G+
Sbjct: 11  KPYVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 27.7 bits (60), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
            KPY C  C   F    +L +H R HT E
Sbjct: 10  MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 28

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSG 313
           +P+ C  C KRFS    ++TH R+H+G
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVHTG 28



 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTG 285
           RP+ C++C K F+    ++ H+ VHTG
Sbjct: 2   RPYSCSVCGKRFSLKHQMETHYRVHTG 28


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 15/25 (60%)

Query: 233 YECNVCYKTFGQLSNLKVHLRTHNG 257
           YECN C K F   S L VH RTH G
Sbjct: 13  YECNECGKAFIWKSLLIVHERTHAG 37



 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSG 313
           EKP+EC  C K F   S L  H R H+G
Sbjct: 10  EKPYECNECGKAFIWKSLLIVHERTHAG 37



 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTG 285
           E+P++CN C K+F   + L  H   H G
Sbjct: 10  EKPYECNECGKAFIWKSLLIVHERTHAG 37


>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
          Length = 29

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLH 311
           K H+C +C K+F+   NLK H+++H
Sbjct: 1   KEHKCPHCDKKFNQVGNLKAHLKIH 25


>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
           Protein Zfy: 2d Nmr Structure Of An Even Finger And
           Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRL-HSGQK 315
           K ++C YC+ R + +SNLKTH++  HS +K
Sbjct: 1   KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
           ERP+ CN C K+F + +HL +H   H  EK
Sbjct: 10  ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39


>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
          Length = 30

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRL-HSGQK 315
           K ++C YC+ R + +SNLKTH++  HS +K
Sbjct: 1   KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHT 284
           E+ F+CN C K+F+   +L +H  +HT
Sbjct: 10  EKCFKCNKCEKTFSCSKYLTQHERIHT 36


>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
          Length = 30

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRL-HSGQK 315
           K ++C YC+ R + +SNLKTH++  HS +K
Sbjct: 1   KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARF 326
           H C  C + F+S    + H+RL    + + C+ CPA F
Sbjct: 29  HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66


>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
           Protein
          Length = 124

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 289 HECIYCQKRFSSTSNLKTHMR 309
           H C+ C + F  ++NLKTH R
Sbjct: 51  HRCLACARYFIDSTNLKTHFR 71


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 28.9 bits (63), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEK 287
           F C +CT++F +   L++H+  HT EK
Sbjct: 3   FVCEVCTRAFARQEALKRHYRSHTNEK 29


>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
           KP +C  C+    S SNLK HM  HS +K
Sbjct: 8   KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVH 283
           R   G +PFQC  C +SF++  HL  H   H
Sbjct: 4   RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34



 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLHKRLH 339
           R  +G KP+ C  C   F++  HL LH++ H
Sbjct: 4   RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
           Zinc Finger Protein 473
          Length = 44

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHT 284
           E PF+C+ C + FTQ  +L +H   H 
Sbjct: 10  ENPFKCSKCDRVFTQRNYLVQHERTHA 36


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLH 339
           +G KP+ C  C   F++  HL LH++ H
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRH 30


>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHS 312
           K H C  C K+F S   LK+H  LH+
Sbjct: 8   KTHLCDMCGKKFKSKGTLKSHKLLHT 33


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,852,499
Number of Sequences: 62578
Number of extensions: 419270
Number of successful extensions: 1818
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 853
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)