RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8181
(361 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 39.7 bits (93), Expect = 5e-05
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 247 NLKVHLRTHNGERPFQCNICTKSFTQ 272
NL+ H+RTH GE+P++C +C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 39.3 bits (92), Expect = 7e-05
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 303 NLKTHMRLHSGQKPYHCEVCPARFTQ 328
NL+ HMR H+G+KPY C VC F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 37.8 bits (88), Expect = 2e-04
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSS 300
+L++H HTGEKP++C C K FSS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.5 bits (77), Expect = 0.007
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 331 HLKLHKRLHTNERPYVCKGCNKRY 354
+L+ H R HT E+PY C C K +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 38.0 bits (89), Expect = 7e-04
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 234 ECNVCYKTFGQLSNLKVHLRTHNGERPFQCNIC-TKSFTQLAHLQK--HHLVHTGEKPHE 290
+C C T + H+ +G F I + L L +H G +E
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHG---F--FIPEREYLVDLEGLLNYLREKIHEG---NE 52
Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
C+YC K+F S L+ HMR HC
Sbjct: 53 CLYCGKQFKSLEALRQHMRDKG-----HC 76
Score = 33.8 bits (78), Expect = 0.029
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 290 ECIYCQKRFSSTSNLKTHMRL-HS---GQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
+C++C + HM H ++ Y V Y+ K+H+
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHGFFIPEREYL--VDLEGLLNYLREKIHEGNE------ 52
Query: 346 VCKGCNKRYISLSGLR 361
C C K++ SL LR
Sbjct: 53 -CLYCGKQFKSLEALR 67
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 38.4 bits (89), Expect = 0.004
Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 20/103 (19%)
Query: 260 PFQCNICTKSFTQLAHLQK--HHL--------VHTGEKPH--ECIYCQKRFSSTSNLKTH 307
P C IC+ HL + HHL G P C CQ F
Sbjct: 322 PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFD 381
Query: 308 MRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGC 350
SG+ Y CE+C + F + +H+ LH C GC
Sbjct: 382 ESTSSGR--YQCELCKSTFCSDCDVFIHETLHF------CIGC 416
Score = 28.0 bits (62), Expect = 8.1
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 202 SCGSPLSPNSQGSRGYRSLPYPLK------KKDGKMHYECNVCYKTFGQLSNLKVHLRTH 255
C L ++ +R Y L YPLK + C VC F + T
Sbjct: 327 ICSLQLILSTHLARSYHHL-YPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTS 385
Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQ 295
+G +QC +C +F + H E H CI C+
Sbjct: 386 SGR--YQCELCKSTFCSDCDVFIH------ETLHFCIGCE 417
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 35.5 bits (81), Expect = 0.039
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 281 LVHTGEKPHEC--IYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRL 338
L KP++C C K++ + + LK HM LH Q E K
Sbjct: 342 LKVKDGKPYKCPVEGCNKKYKNQNGLKYHM-LHGHQNQKLHENPSPEKMNIFSAK----- 395
Query: 339 HTNERPYVCKGCNKRYISLSGLR 361
++PY C+ C+KRY +L+GL+
Sbjct: 396 ---DKPYRCEVCDKRYKNLNGLK 415
Score = 31.6 bits (71), Expect = 0.70
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 257 GERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
+P++C + C K + L K+H++H + ++ + + +
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGL-KYHMLHG--------HQNQKLHENPSPEKMNIFSAKD 396
Query: 315 KPYHCEVCPARFTQYVHLKLHK 336
KPY CEVC R+ LK H+
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYHR 418
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 31.2 bits (71), Expect = 0.043
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 234 ECNVCYKTFGQLSNLKVHLRTH 255
+C C K+F + SNLK HLRTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.8 bits (70), Expect = 0.054
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 262 QCNICTKSFTQLAHLQKHHLVH 283
+C C KSF++ ++L++H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.6 bits (67), Expect = 0.15
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 293 YCQKRFSSTSNLKTHMRLH 311
C K FS SNLK H+R H
Sbjct: 4 DCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 3.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 319 CEVCPARFTQYVHLKLHKRLH 339
C C F++ +LK H R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 35.1 bits (80), Expect = 0.052
Identities = 45/222 (20%), Positives = 75/222 (33%), Gaps = 19/222 (8%)
Query: 10 QEKEVHSTSPPPP-----PSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAE 64
Q + H +P PP SS +M+ + S D P +PT +++ ++
Sbjct: 17 QSRRPHERNPSPPSVSCGLSSGLQKIMMDDLDSSVDFTRLP---SPTPENKDLFFVTR-- 71
Query: 65 NVQKELRHIPSLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANY 124
+ P+ +S S E R +L D+ +H S + +
Sbjct: 72 --PSLAQSSPAYSSSYSEINEPELGMPNGGRSLSLVDLQDAASGQVHSSPMGLPGALGLR 129
Query: 125 PPSGHISLQSGYHSSNGPSIIIQSP----PQSNGNYSPPSSSSNIYSQQPPIHHLMTVMP 180
S S +SG S G + Q + S Q P++H+ +P
Sbjct: 130 RASVPWSARSGQSSIAGGLRLSQPQSAPTVRLLHAAPAQPQLLQPLSFQNPVYHMAAPLP 189
Query: 181 --PLQHSFKPSHHSPRSLS-PDDGSCGSPLSPNSQGSRGYRS 219
P S +H S S S +D S + S + RS
Sbjct: 190 VSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRS 231
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 30.9 bits (70), Expect = 0.054
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 289 HECIYCQKRFSSTSNLKTHMRLH 311
+ C C K F S S L+ HMR H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.7 bits (67), Expect = 0.14
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVH 283
++C C K F + L++H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.23
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTH 255
Y C C K F S L+ H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.35
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 317 YHCEVCPARFTQYVHLKLHKRLH 339
Y C C F L+ H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 30.3 bits (69), Expect = 0.095
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 289 HECIYCQKRFSSTSNLKTHMRLH 311
H C C K FSS L H + H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 26.8 bits (60), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTH 255
+ C VC KTF L L H ++H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 29.9 bits (68), Expect = 0.12
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 288 PHECIYCQKRFSSTSNLKTHMR 309
C+ C K F S + L+ H++
Sbjct: 1 QFYCVACDKYFKSENALENHLK 22
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 33.5 bits (76), Expect = 0.17
Identities = 48/225 (21%), Positives = 72/225 (32%), Gaps = 9/225 (4%)
Query: 102 SPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSS 161
S D L + S + QS P+ + P SN + S+
Sbjct: 132 SRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSN 191
Query: 162 SSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSLSPDDGSCGSPLSPNSQGSRGYRSLP 221
S L + S + S S + S LSP S S+ SL
Sbjct: 192 VSTSIPSSSENSPLSS--SYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLS 249
Query: 222 YPLKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGER-PFQCNICTKSFTQLAHLQKH- 279
++ + S + + G P + C SF++ + L +H
Sbjct: 250 SSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHL 309
Query: 280 -HLVHTGE--KPHEC--IYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+ H+GE KP C C K FS LK H+ LH+ P
Sbjct: 310 RSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE 354
Score = 30.8 bits (69), Expect = 1.4
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKP 316
RP C CT SF++L HL +H HTGEKP +C Y C K FS L H+R H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 33.5 bits (76), Expect = 0.17
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 28/121 (23%)
Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNICTKS----------FTQLAHLQKHH---LVHT 284
C++ G L LK H + +G C+ C + F + L+ H L
Sbjct: 159 CHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRS-STLRDHKNGGLEEE 215
Query: 285 GEKPH-ECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVC-------PARFTQYVHLKLHK 336
G K H CI+C+ F L+ H RL + C +C F Y L+ H
Sbjct: 216 GFKGHPLCIFCKIYFYDDDELRRHCRL----RHEACHICDMVGPIRYQYFKSYEDLEAHF 271
Query: 337 R 337
R
Sbjct: 272 R 272
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger.
Length = 43
Score = 29.1 bits (66), Expect = 0.29
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 290 ECIYCQKRFS---STSNLKTHMR 309
C YC K S TSNLK H+
Sbjct: 17 RCKYCGKILSGGGGTSNLKRHLV 39
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 28.4 bits (63), Expect = 0.41
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 289 HECIYCQKRFSSTSNLKTHMRLH 311
+C C K FSS LK H+R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTH 255
++C +C K+F LK HLR H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 2.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVH 283
F+C +C KSF+ L++H H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 3.7
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 317 YHCEVCPARFTQYVHLKLHKRLH 339
+ C +C F+ LK H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 32.1 bits (73), Expect = 0.63
Identities = 34/204 (16%), Positives = 46/204 (22%), Gaps = 8/204 (3%)
Query: 16 STSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPS 75
+ P P + + SP A S RS A++ S
Sbjct: 182 TARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241
Query: 76 LNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSG 135
S LP S P AS ++ P S
Sbjct: 242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS 301
Query: 136 YHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRS 195
S S+ + S SSSS+ S SP
Sbjct: 302 --SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV------SPGPSPSRSPSP 353
Query: 196 LSPDDGSCGSPLSPNSQGSRGYRS 219
P + S + SR S
Sbjct: 354 SRPPPPADPSSPRKRPRPSRAPSS 377
Score = 28.2 bits (63), Expect = 9.8
Identities = 33/207 (15%), Positives = 47/207 (22%), Gaps = 20/207 (9%)
Query: 8 FDQEKEVHSTSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQ 67
PP PG + S S AP S S
Sbjct: 55 VVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR---EGSPTPPGP 111
Query: 68 KELRHIPSLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPS 127
P P S P P S S P A+ +
Sbjct: 112 SSPDPPPPTPPPASPPPS--------------PAPDLSEMLRPVGSPGPPPAASPPAAGA 157
Query: 128 GHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFK 187
++ S SS ++ + SP ++ S P + P P
Sbjct: 158 SPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPP---STPPAAASPRPPRRSSPIS 214
Query: 188 PSHHSPRSLSPDDGSCGSPLSPNSQGS 214
S SP + + S + S
Sbjct: 215 ASASSPAPAPGRSAADDAGASSSDSSS 241
>gnl|CDD|218232 pfam04731, Caudal_act, Caudal like protein activation region. This
family consists of the amino termini of proteins
belonging to the caudal-related homeobox protein family.
This region is thought to mediate transcription
activation. The level of activation caused by mouse Cdx2
is affected by phosphorylation at serine 60 via the
mitogen-activated protein kinase pathway. Caudal family
proteins are involved in the transcriptional regulation
of multiple genes expressed in the intestinal
epithelium, and are important in differentiation and
maintenance of the intestinal epithelial lining. Caudal
proteins always have a homeobox DNA binding domain
(pfam00046).
Length = 135
Score = 30.5 bits (69), Expect = 0.67
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 14/107 (13%)
Query: 123 NYPPSGHISLQSGYHSSNGPSIIIQSPPQSNG----NYSPPSSSSNIYSQQPPIHHLMTV 178
N+ + GYH P + + Q +G Y PP + Y P
Sbjct: 17 NFVSAPQYPDYGGYHHV--PGMNLDPHGQPSGAWGSPYGPPREDWSAYGPGPGPSATAAT 74
Query: 179 MPPLQHSFKPSHHSPR--------SLSPDDGSCGSPLSPNSQGSRGY 217
P Q ++ P +SP L P D LSP++Q Y
Sbjct: 75 GSPGQMAYSPPDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQRRSPY 121
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 31.0 bits (70), Expect = 0.72
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 130 ISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSN---IYSQQPPIHHLMTVMPPLQHSF 186
+ G S P +++ +P NG+ SP SSN + +H L ++ F
Sbjct: 93 MGYYKGPPYSGYPFLMLPNPYLPNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHF 152
Query: 187 KPSHHSPRSLSPDDGSCGSPLSPNSQGSRGYRSLP 221
P P D G P P+ + L
Sbjct: 153 SPGTPPPHLPYDVDPKTGIPRPPHPPDISPFYPLS 187
>gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger. DNA-binding domain in
chromatin-boundary-element-binding proteins and
transposases.
Length = 50
Score = 27.8 bits (62), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 290 ECIYCQKRFS-----STSNLKTHMR 309
+C YC K+ S TSNL+ H+R
Sbjct: 20 KCKYCGKKLSRSSKGGTSNLRRHLR 44
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 30.7 bits (69), Expect = 1.5
Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 21/200 (10%)
Query: 20 PPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPSL--- 76
PPP PG P V Q V S + L + K N++ + +
Sbjct: 312 GPPPQRPG------AVPQGGQAVQQGV----MSAGQQQLKQMKLRNMRGQQQTQQQQQQQ 361
Query: 77 --NSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQS 134
N P + +M + + L + + A+ G +S S
Sbjct: 362 GGNHPAAHQQQMNQQVGQGGQMVALGYLNIQ------GNQGGLGANPMQQGQPGMMSSPS 415
Query: 135 GYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPR 194
+ Q P S + P S I +MP S S R
Sbjct: 416 PVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPASQR 475
Query: 195 SLSPDDGSCGSPLSPNSQGS 214
++ D S G PL+ Q S
Sbjct: 476 TIQQDMVSPGGPLNTPGQSS 495
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 29.1 bits (65), Expect = 1.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 260 PFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHM 308
P+ C +C F+ L++H + E C C K F +T + H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQH--IRYTEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|224508 COG1592, COG1592, Rubrerythrin [Energy production and conversion].
Length = 166
Score = 29.2 bits (66), Expect = 1.9
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 15/45 (33%)
Query: 223 PLKKKDGKMHYECNVC-YKTFGQLSNLKVHLRTHNGERPFQCNIC 266
L++ + + C VC Y TH GE P C IC
Sbjct: 125 LLERLEEGKVWVCPVCGY--------------THEGEAPEVCPIC 155
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 29.9 bits (67), Expect = 2.3
Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 24/204 (11%)
Query: 19 PPPPPSSPGDNLMIVESPSPSDMVPQPVC--------KAPTSILENILMRSKAENVQKEL 70
P PS P + E P P +VP+P+ K PTS + S A + +
Sbjct: 348 TPEAPSPPIEE----EPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDA 403
Query: 71 RHIPSLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHI 130
P+ SP + V P R +SP E PP+
Sbjct: 404 VAKPAEPDVVPSPGSAS---------NVPEVEPAQVEAKKTRPLSPYARYEDLKPPT--- 451
Query: 131 SLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSH 190
S + PS+ S + + +P +++++ + P ++ P+
Sbjct: 452 SPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTS 511
Query: 191 HSPRSLSPDDGSCGSPLSPNSQGS 214
SP + + S
Sbjct: 512 PSPAAPVGKVAPSSTNEVVKVGNS 535
>gnl|CDD|225899 COG3364, COG3364, Zn-ribbon containing protein [General function
prediction only].
Length = 112
Score = 28.4 bits (63), Expect = 2.6
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 288 PHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYV 330
PH+C C + F S + SG C C YV
Sbjct: 2 PHQCTRCGEVFDDGS-----EEILSG-----CPKCGCNKFLYV 34
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 288 PHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYV 330
PH C C K F S + G C C + YV
Sbjct: 1 PHRCTKCGKIFEDGS-----TEILKG-----CPSCGGKKFLYV 33
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.9 bits (59), Expect = 2.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHN 256
YEC +C + + + ++ HLR HN
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHN 29
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 29.2 bits (65), Expect = 3.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 4 LYHKFDQEKEVHSTSPPPPPSSPGDNLMIVESPSPSDMVPQP 45
L KF + E + SPPPPP P P+P P P
Sbjct: 104 LLAKFRAQYERAAVSPPPPPPPPPAR----AEPAPPVARPAP 141
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 29.8 bits (66), Expect = 3.0
Identities = 42/198 (21%), Positives = 66/198 (33%), Gaps = 16/198 (8%)
Query: 12 KEVHSTSPPPPPSSPGDNLMIVESPSPSDMVPQ-----PVCKAPTSILENILMRSKAENV 66
K V +P S ++ P + VP P PT + +
Sbjct: 419 KVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTT 478
Query: 67 QKELRHIPSLNSPPSSPTEMAYSYKKSARYGNL--PVSPDSTHQHLHRSVSPV---QASE 121
L S S +S T A S + N P + ++ S +P+ +
Sbjct: 479 SSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTT 538
Query: 122 ANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPP 181
A PP+G S+ + + P + +SP + S+ S + S H P
Sbjct: 539 ATSPPTGTTSVPN----ATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPT 594
Query: 182 LQHSFKP--SHHSPRSLS 197
Q P SH +PRS S
Sbjct: 595 SQQPGIPSSSHSTPRSNS 612
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 29.3 bits (66), Expect = 3.1
Identities = 24/119 (20%), Positives = 31/119 (26%), Gaps = 25/119 (21%)
Query: 9 DQEKEVHSTSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQK 68
+ S P PS P D SPSD P AP+S +
Sbjct: 184 PSDPPSSSPGVPSFPSPPED------PSSPSDSSLPP---APSSFQSD------------ 222
Query: 69 ELRHIPSLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPS 127
P P++P+ V P ST + S S A
Sbjct: 223 ---TPPPSPESPTNPSPPPGPAAPPPPPVQ-QVPPLSTAKPTPPSASATPAPIGGITLD 277
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 29.4 bits (66), Expect = 3.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 20 PPPPSSPGD--NLMIVESPSPSDMVP--QPVCKAP 50
PPPP SP D + + E P + MVP PV AP
Sbjct: 94 PPPPYSPRDQGSEHVYEEPRDARMVPPWLPVICAP 128
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 29.3 bits (65), Expect = 3.5
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 122 ANYPPSGHISLQSGYHSSNGPSIII--QSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVM 179
N P+G + + SS+ PS ++ + P + SPP++ S I S
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPS--------TS 620
Query: 180 PPLQHSFKPSHHSPRSLSPDDGSCGSPLSPNS 211
PP H PS S + SP S
Sbjct: 621 PPASHLGSPSTTPSSPESSIKVASTETASPES 652
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 28.8 bits (65), Expect = 3.8
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERP---FQCNICTKS-FTQLAHLQKHHLVHT 284
GK V +K G LKV L G+R + T+ A HL
Sbjct: 131 GKKKKRTRVTFKRKGGSRLLKVSLAHERGKRRRRDLSLDNFTQKLALHCAKTTTRHLRVD 190
Query: 285 GEKPH 289
K
Sbjct: 191 DIKLK 195
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 29.0 bits (65), Expect = 4.6
Identities = 19/87 (21%), Positives = 23/87 (26%), Gaps = 27/87 (31%)
Query: 19 PPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILE------------NIL-------- 58
PPPP + E P P + E NIL
Sbjct: 277 PPPPEPPEPEE----EPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILATLQTVQR 332
Query: 59 MRSKAENVQKEL---RHIPSLNSPPSS 82
R +A QK R + S P S
Sbjct: 333 RRGRAGGEQKSNHRGRPLRSRLGKPGS 359
>gnl|CDD|217500 pfam03337, Pox_F12L, Poxvirus F12L protein.
Length = 651
Score = 28.9 bits (65), Expect = 5.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 15 HSTSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELR 71
P PPP +P L I + S P+ +P L +IL R +A + EL
Sbjct: 65 KYVEPLPPPPAPISRLFIDSLDTDSYYSPK-TSSSP---LIDIL-RKRASE-EPELA 115
>gnl|CDD|220830 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase
degradation C-term. Ofd1 is a prolyl
4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase
that accelerates the degradation of Sre1N in the
presence of oxygen. The domain is conserved from yeasts
to humans. Yeast Sre1 is the orthologue of mammalian
sterol regulatory element binding protein (SREBP), and
it responds to changes in oxygen-dependent sterol
synthesis as an indirect measure of oxygen
availability. However, unlike the prolyl 4-hydroxylases
that regulate mammalian hypoxia-inducible factor, Ofd1
uses multiple domains to regulate Sre1N degradation by
oxygen; the Ofd1 N-terminal dioxygenase domain is
required for oxygen sensing and this Ofd1 C-terminal
domain accelerates Sre1N degradation in yeasts.
Length = 246
Score = 28.4 bits (64), Expect = 5.3
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 54 LENILMRSKAENVQKELRHIPSLNSPPSSPTEMAYSYKKS 93
LE+ L A +++ L P S E+ +K +
Sbjct: 35 LEDFLKEEFAALLREYLESQEKEKELPQSSKEIELPWKVA 74
>gnl|CDD|216412 pfam01285, TEA, TEA/ATTS domain family.
Length = 424
Score = 28.2 bits (63), Expect = 7.3
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 108 QHLHRSVSPVQASEANYPPS-GHISLQSGYHSSNGPSIIIQ---SPPQSNGNYSPPSSSS 163
+ +R S VQ AN+ + + +S G + I Q +PP+ + PP +
Sbjct: 351 RFFYRHRSAVQEYRANFIHKLRRLPEKYMMNSVVGTTTIRQVISNPPEHRDSQEPPLCLA 410
Query: 164 NIYSQQPPIHHLM 176
++ H
Sbjct: 411 YVFEVSTQEHGAQ 423
>gnl|CDD|233501 TIGR01637, phage_arpU, phage transcriptional regulator, ArpU
family. This model represents a family of phage
proteins, including ArpU, called a putative autolysin
regulatory protein. ArpU was described as a regulator
of cellular muramidase-2 of Enterococcus hirae but
appears to have been cloned from a prophage. This
family appears related to the RinA family of
bacteriophage transcriptional activators and to some
sporulation-specific sigma factors. We propose that
this is a phage transcriptional activator family
[Mobile and extrachromosomal element functions,
Prophage functions, Regulatory functions, DNA
interactions].
Length = 132
Score = 27.0 bits (60), Expect = 8.0
Identities = 12/64 (18%), Positives = 20/64 (31%)
Query: 27 GDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPSLNSPPSSPTEM 86
G +L SPS S P + + E + AE + + + S +
Sbjct: 29 GRSLTPKLSPSLSLEPPSFTNEFHSKTEEAAIHNLDAEQEARAIVNAIVNQLDEISRQIL 88
Query: 87 AYSY 90
Y
Sbjct: 89 YDKY 92
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 28.5 bits (63), Expect = 8.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 111 HRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQP 170
+ + A +N S + GY+++ + +PP SN YS P +S+ YS P
Sbjct: 399 QSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLP 458
>gnl|CDD|147470 pfam05290, Baculo_IE-1, Baculovirus immediate-early protein (IE-0).
The Autographa californica multinucleocapsid nuclear
polyhedrosis virus (AcMNPV) ie-1 gene product (IE-1) is
thought to play a central role in stimulating early
viral transcription. IE-1 has been demonstrated to
activate several early viral gene promoters and to
negatively regulate the promoters of two other AcMNPV
regulatory genes, ie-0 and ie-2. It is thought that that
IE-1 negatively regulates the expression of certain
genes by binding directly, or as part of a complex, to
promoter regions containing a specific IE-1-binding
motif (5'-ACBYGTAA-3') near their mRNA start sites.
Length = 141
Score = 27.0 bits (60), Expect = 9.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 10/31 (32%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+QCNIC + ++H L KP+EC
Sbjct: 81 YQCNICQDTSA-----EEHFL-----KPNEC 101
>gnl|CDD|132858 cd07219, Pat_PNPLA1, Patatin-like phospholipase domain containing
protein 1. Members of this family share a patatin
domain, initially discovered in potato tubers. Some
members of PNPLA1 subfamily do not have the lipase
consensus sequence Gly-X-Ser-X-Gly which is essential
for hydrolase activity. This family includes PNPLA1
from Homo sapiens and Gallus gallus. Currently, there is
no literature available on the physiological role,
structure, or enzymatic activity of PNPLA1. It is
expressed in various human tissues in low mRNA levels.
Length = 382
Score = 27.9 bits (62), Expect = 9.8
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 108 QHLHRSVSPVQAS--EANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNY---SPPSSS 162
Q S+ QAS E+ P G + P + P+S + SP SS
Sbjct: 287 QRSQPSLQDGQASLEESWQPHLARAPKGDGRGLHDPPLSPPLAAPESTAEWVVESPVSSP 346
Query: 163 SNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSLSP 198
++ P + +T + P P+ HS S +P
Sbjct: 347 ASPLESSPSLPGSLTDLSPASL---PAVHSLPSSTP 379
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.403
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,616,016
Number of extensions: 1569280
Number of successful extensions: 1350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 138
Length of query: 361
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 263
Effective length of database: 6,590,910
Effective search space: 1733409330
Effective search space used: 1733409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.9 bits)