RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8181
(361 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 160 bits (408), Expect = 3e-48
Identities = 57/129 (44%), Positives = 76/129 (58%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
Y C C K+F + +L H RTH GE+P++C C KSF+ L +H HTGEKP++C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 293 YCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNK 352
C K FS +NL+ H R H+G+KPY C C F+Q HL+ H+R HT E+PY C C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 353 RYISLSGLR 361
+ L
Sbjct: 142 SFSREDNLH 150
Score = 158 bits (403), Expect = 1e-47
Identities = 56/129 (43%), Positives = 77/129 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
Y+C C K+F +L H RTH GE+P++C C KSF+Q A+L+ H HTGEKP+ C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 293 YCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNK 352
C K FS ++L+ H R H+G+KPY C C F++ +L H+R HT E+PY C C K
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 353 RYISLSGLR 361
+ L
Sbjct: 170 SFSRRDALN 178
Score = 147 bits (373), Expect = 3e-43
Identities = 49/121 (40%), Positives = 68/121 (56%)
Query: 241 TFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSS 300
+ S+ GE+P+ C C KSF++ HL +H HTGEKP++C C K FS
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 301 TSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
+L H R H+G+KPY C C F+Q +L+ H+R HT E+PY C C K + L+ L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 361 R 361
R
Sbjct: 122 R 122
Score = 146 bits (372), Expect = 5e-43
Identities = 55/112 (49%), Positives = 73/112 (65%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
Y+C C K+F Q +NL+ H RTH GE+P+ C C KSF+QLAHL+ H HTGEKP++C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 293 YCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
C K FS NL TH R H+G+KPY C C F++ L +H+R HT ++
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 150 bits (381), Expect = 7e-45
Identities = 54/144 (37%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 233 YECNVCYKTFGQLSNLKVHL---RTHNGERPFQCNIC-----TKSFTQLAHLQKHHLVHT 284
+ C + F L H+ H + F C+ + F L H HT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 285 GEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCE--VCPARFTQYVHLKLHK-RLH 339
GEKPH+C + C+K +S NLKTH+R H+G+KPY CE C F+ H+ R H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 340 TNERPYVCK--GCNKRYISLSGLR 361
+NE+PYVCK GC KRY S LR
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLR 147
Score = 132 bits (335), Expect = 5e-38
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Query: 233 YECNVC-----YKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTG 285
+ C+ + F L VH+R H GE+P +C C KS+++L +L+ H HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 286 EKPHEC--IYCQKRFSSTSNLKTHM-RLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHT 340
EKP+ C C K FS+ S+ H R HS +KPY C++ C R+T L+ H +
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 120 bits (302), Expect = 4e-33
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 258 ERPFQCNICTKSFTQLAHLQKH---HLVHTGEKPHECIYC-----QKRFSSTSNLKTHMR 309
E + + C++ F L H +H K C + + F + L HMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 310 LHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCK--GCNKRYISLSGLR 361
H+G+KP+ C E C +++ +LK H R HT E+PY+C+ GC+K + + S
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Score = 108 bits (273), Expect = 6e-29
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCN--ICTKSFTQLAHLQKHHL-VHTGEK 287
++C C K++ +L NLK HLR+H GE+P+ C C+K+F+ + KH H+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 288 PHEC--IYCQKRFSSTSNLKTHMRLHSG 313
P+ C C KR++ S+L+ H++ G
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 147 bits (374), Expect = 3e-43
Identities = 52/141 (36%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCN--ICTKSFTQLAHLQKHHLVHTGEKP 288
Y C+ C + + L+ HL H GE+PF C C K FT L HL +H L HTGEK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 289 HEC--IYCQKRFSSTSNLKTHMRLHSGQK--PYHCEV--CPARFTQYVHLKLHKRLHTNE 342
C C RF++ +N+K H K Y C C F ++ LK+H+ HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 343 RPYVCK--GCNKRYISLSGLR 361
PY C GC+KR+ S L+
Sbjct: 133 LPYECPHEGCDKRFSLPSRLK 153
Score = 138 bits (349), Expect = 1e-39
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 233 YECN--VCYKTFGQLSNLKVHLRTHNGERPFQCN--ICTKSFTQLAHLQKHHLVHTGEK- 287
+ C C K F L +L H TH GE+ F C+ C FT A+++KH K
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 288 -PHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNE 342
+ C + C K F + LK H H+ Q PY C E C RF+ LK H+++H
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162
Query: 343 RPYVCKGCNK 352
C+
Sbjct: 163 PCKKDDSCSF 172
Score = 123 bits (310), Expect = 6e-34
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 251 HLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHEC--IYCQKRFSSTSNLKT 306
+ + C+ C ++ + LQ H HTGEKP C C+K F+S +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 307 HMRLHSGQKPYHCE--VCPARFTQYVHLKLHKRLHTNER--PYVC--KGCNKRYISLSGL 360
H H+G+K + C+ C RFT ++K H N + YVC + C K + + L
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 361 R 361
+
Sbjct: 123 K 123
Score = 115 bits (291), Expect = 3e-31
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 233 YECN--VCYKTFGQLSNLKVHLRTHNGER--PFQCNI--CTKSFTQLAHLQKHHLVHTGE 286
+ C+ C F +N+K H + + + C+ C K+F + L+ H HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 287 KPHEC--IYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQY-VHLKLHKRLHT 340
P+EC C KRFS S LK H ++H+G + C + ++LK H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 93.4 bits (233), Expect = 7e-23
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 278 KHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCE--VCPARFTQYVHLK 333
+ K + C + C ++ L+ H+ H+G+KP+ C+ C FT HL
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 334 LHKRLHTNERPYVCK--GCNKRYISLSGLR 361
H HT E+ + C GC+ R+ + + ++
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMK 91
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 146 bits (370), Expect = 3e-43
Identities = 49/162 (30%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 201 GSCGSPLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERP 260
GS GS P Q + ++ C +TF + L H+ + P
Sbjct: 1 GSSGSSGQPIKQELSCKWI-------DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP 53
Query: 261 FQ---------CNICTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMR 309
Q C KSF L H VHTGEKP C + C K F+ + NLK H R
Sbjct: 54 EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Query: 310 LHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNERPYVCKG 349
H+G+KP+ CE C RF K H +HT+++ G
Sbjct: 114 THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG 155
Score = 130 bits (329), Expect = 3e-37
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH-------- 289
+ + + C ++F+ + L H + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 290 -ECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNERPYV 346
EC K F + L H+R+H+G+KP+ C C F + +LK+HKR HT E+P+
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 347 C--KGCNKRYISLSGLR 361
C +GC++R+ + S +
Sbjct: 123 CEFEGCDRRFANSSDRK 139
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 143 bits (364), Expect = 1e-42
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 233 YEC--NVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
C C K F S ++ HL TH G R C C K+F + + L++H LVHTGEKP +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64
Query: 291 CIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNERPY 345
C + C KRFS NL+TH+R+H+G +PY C C +F Q +LK H H +
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 117 bits (295), Expect = 1e-32
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
R C CTK F + ++KH H G + H C C K F +S LK H +H+G+K
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 316 PYHCEV--CPARFTQYVHLKLHKRLHTNERPYVC--KGCNKRYISLSGLR 361
P+ C C RF+ +L+ H R+HT +RPYVC GCNK++ + L+
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 111
Score = 81.4 bits (202), Expect = 3e-19
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKP 288
++C C K F NL+ H+R H G+RP+ C C K F Q +L+ H L H K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 289 HE 290
++
Sbjct: 123 NQ 124
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 141 bits (358), Expect = 7e-42
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 233 YECN--VCYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKP 288
+ C C K + +LS+L++H R H GE+P+QC+ C + F++ L++H HTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLH 339
+C CQ++FS + +LKTH R H+G+KP+ C C +F + L H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 132 bits (334), Expect = 2e-38
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Query: 257 GERPFQCN--ICTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHS 312
+RPF C C K + +L+HLQ H HTGEKP++C + C++RFS + LK H R H+
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 313 GQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKG--CNKRYISLSGLR 361
G KP+ C+ C +F++ HLK H R HT E+P+ C+ C K++ L
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Score = 95.7 bits (239), Expect = 2e-24
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 284 TGEKPHEC--IYCQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLH 339
+ ++P C C KR+ S+L+ H R H+G+KPY C+ C RF++ LK H+R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 340 TNERPYVCKGCNKRYISLSGLR 361
T +P+ CK C +++ L+
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLK 83
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 138 bits (349), Expect = 2e-40
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHH---LVHTGEKPH 289
EC C+K F LKVH R H GE+PF+C C K + + +L +H ++ E+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 290 ECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHK-RLHTNER 343
C CQ+ F L+ HM H+G+ PY C C +F Q L+ H +LH+
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 126 bits (318), Expect = 6e-36
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 255 HNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRL---H 311
+G +C C K F +L+ H+ HTGEKP EC C K + NL H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
++ + C VC F + + L+LH HT E PY C C+++++ L+
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 134 bits (339), Expect = 3e-39
Identities = 31/102 (30%), Positives = 45/102 (44%)
Query: 246 SNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLK 305
S ++ F C C + FT+ +L H HT E+P+ C C K F +L+
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
H +HS +KP+ C+ C F Q L +HK LH
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 124 bits (314), Expect = 2e-35
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
+ C C + F + NL +H RTH ERP+ C+IC K+F + HL+ H +H+ EKP +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 293 YCQKRFSSTSNLKTHMRLHSGQKPYHC 319
C K F + L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 103 bits (259), Expect = 2e-27
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKL 334
L +K C +C + F+ + NL H R H+ ++PY C++C F + HL+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
H+ +H+ E+P+ C+ C K + L
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTL 89
Score = 68.2 bits (168), Expect = 1e-14
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 302 SNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
S +K + C+ C FT+ +L +H+R HT+ERPY C C+K + LR
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Score = 50.5 bits (122), Expect = 2e-08
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F Q L VH H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 132 bits (334), Expect = 1e-38
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 254 THNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSG 313
+ P +C +C K F++ L+ H HTG KP++C C + +S+L H+R+HS
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 314 QKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
++P+ C++CP L +H R HT +
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 126 bits (320), Expect = 1e-36
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
++C VC K F + LK H+R H G +P++C C + + L KH +H+ E+P +C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 293 YCQKRFSSTSNLKTHMRLHSGQKPYHC 319
C ++S L H+R H+G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 100 bits (253), Expect = 8e-27
Identities = 31/79 (39%), Positives = 40/79 (50%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
PH+C C K FS LKTHMR H+G KPY C+ C L H R+H++E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 343 RPYVCKGCNKRYISLSGLR 361
RP+ C+ C + S L
Sbjct: 63 RPFKCQICPYASRNSSQLT 81
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 126 bits (318), Expect = 4e-36
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
+G++ + C C KSFT + +H +H G +P+ C C K+F +L HM++H+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 313 GQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
G KPY C +C RF H+ + + + Y + SG
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 121 bits (306), Expect = 3e-34
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
Y C C K+F S H+ H G RP+ C +C K F HL H +HTG KP+EC
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 293 YCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHL 332
C KRF + H + S K Y T+
Sbjct: 70 ICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 96.0 bits (240), Expect = 9e-25
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
Y C VC K F +L H++ H G +P++CNIC K F H V + K +E
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95
Query: 293 YCQKRFSSTSNLKT 306
++ + S +
Sbjct: 96 KAEQNTTEASGPSS 109
Score = 94.8 bits (237), Expect = 2e-24
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 280 HLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLH 339
+G+K + C C K F+ S HM +H G +PY C VC +F HL H ++H
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 340 TNERPYVCKGCNKRYISLSGL 360
T +PY C C KR++
Sbjct: 61 TGIKPYECNICAKRFMWRDSF 81
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 119 bits (302), Expect = 5e-34
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
Y C V C + F Q +L H+R H G++PFQC IC ++F++ HL H HTGEKP
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
C C ++F+ + K H ++H QK
Sbjct: 65 CDICGRKFARSDERKRHTKIHLRQK 89
Score = 114 bits (289), Expect = 4e-32
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
ERP+ C + C + F+Q L +H +HTG+KP +C C + FS + +L TH+R H+G+K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 316 PYHCEVCPARFTQYVHLKLHKRLHTNER 343
P+ C++C +F + K H ++H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 94.1 bits (235), Expect = 3e-24
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
E+P+ C C +RFS + +L H+R+H+GQKP+ C +C F++ HL H R HT E+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 344 PYVCKGCNKRYISLSGLR 361
P+ C C +++ +
Sbjct: 62 PFACDICGRKFARSDERK 79
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 114 bits (288), Expect = 4e-32
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
++C +C K+F + S L HL H+ RP+ C C K F Q + ++KH +HTGEKPH+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 293 YCQKRFSSTSNLKTHMRLHSG 313
C K FS +SNL TH R H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 105 bits (264), Expect = 1e-28
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
F C IC KSF + + L H L+H+ +P+ C YC KRF S++K H +H+G+KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 321 VCPARFTQYVHLKLHKRLHT 340
VC F+Q +L H R HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 81.3 bits (202), Expect = 1e-19
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 290 ECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKG 349
+C C K F +S L TH+ +HS +PY C+ C RF Q +K H +HT E+P+ C+
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 350 CNKRYISLSGL 360
C K + S L
Sbjct: 63 CGKAFSQSSNL 73
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
+ C++C F + L H +H++ RPY C+ C KR+ S +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDM 45
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 111 bits (281), Expect = 6e-31
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 255 HNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSG- 313
+G C IC K F + HL +H L H+GEKP+ C C RF + H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 314 -QKPYHCEVCPARFTQYVHLKLH-KRLHTNER 343
KPY C+ C F++ HL H K++H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 106 bits (266), Expect = 1e-28
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGE--KPHE 290
C +C K F + +L H +H+GE+P+ C +C F + + H H G KP+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 291 CIYCQKRFSSTSNLKTHM-RLHSGQK 315
C C K FS +L H+ ++HSG
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 94.1 bits (235), Expect = 4e-24
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
+G C C K F +L H HSG+KPY C VC RF + + H R H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 343 --RPYVCKGCNKRYISLSGLR 361
+PY+C+ C K + L
Sbjct: 62 VGKPYICQSCGKGFSRPDHLN 82
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 111 bits (281), Expect = 8e-31
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 241 TFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRF 298
+ G R H + P CTK +T+ +HL+ H HTGEKP++C + C RF
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 299 SSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTN 341
+ + L H R H+G KP+ C VC F++ HL LH + H N
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 104 bits (262), Expect = 4e-28
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 238 CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQ 295
C K + + S+LK HLRTH GE+P++C C F + L +H+ HTG KP +C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 296 KRFSSTSNLKTHMRLH 311
+ FS + +L HM+ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 92.7 bits (231), Expect = 1e-23
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 269 SFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARF 326
S + +H + P C K ++ +S+LK H+R H+G+KPY C E C RF
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 327 TQYVHLKLHKRLHTNERPYVCKGCNKRY 354
+ L H R HT +P+ C CN+ +
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 68.0 bits (167), Expect = 1e-14
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHT 284
Y+C C F + L H R H G +PFQC +C +SF++ HL H H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 111 bits (279), Expect = 1e-30
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 226 KKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVH 283
K+ + C KT+ + S+LK HLRTH GE+P+ C+ C F + L +H+ H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLH 311
TG +P +C C + FS + +L HM+ H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 105 bits (264), Expect = 2e-28
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 255 HNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC--IYCQKRFSSTSNLKTHMRLHS 312
C K++T+ +HL+ H HTGEKP+ C C +F+ + L H R H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 313 GQKPYHCEVCPARFTQYVHLKLHKRLH 339
G +P+ C+ C F++ HL LH + H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 89.9 bits (224), Expect = 1e-22
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHT 340
T + C K ++ +S+LK H+R H+G+KPYHC + C +F + L H R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 341 NERPYVCKGCNKR 353
RP+ C+ C++
Sbjct: 62 GHRPFQCQKCDRA 74
Score = 26.3 bits (59), Expect = 5.0
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 339 HTNERPYVCKGCNKRYISLSGLR 361
T GC K Y S L+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLK 24
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 109 bits (276), Expect = 3e-30
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI 292
++C +C + F + +L H+RTH GE+PF C+IC + F + ++H + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 293 YCQKRFSSTSNLKTH---MRLHSGQK 315
++ S +L+ ++ G++
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVGER 88
Score = 107 bits (269), Expect = 3e-29
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYH 318
+PFQC IC ++F++ HL H HTGEKP C C ++F+ + K H + P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 319 CEVCPARFTQYVHLKLHK---RLHTNER 343
+ ++ HL+ + ER
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 89.5 bits (223), Expect = 1e-22
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYV 346
KP +C C + FS + +L TH+R H+G+KP+ C++C +F + K H+ + P +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPIL 60
Query: 347 CKGCNKRYISLSGLR 361
+ L
Sbjct: 61 EDKVEELLSKNYHLE 75
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 106 bits (268), Expect = 3e-29
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 247 NLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGE--KPHECIYCQKRFSSTSNL 304
+ RTH+GE+P++C IC FTQ ++ H L E C +C + S+L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 305 KTHMR-LHSGQKPY 317
H+R HS P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 100 bits (252), Expect = 7e-27
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSG--QKPYHCEVCPARFTQYVHL 332
H+GEKP+EC C RF+ + +K H+ +HC C + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 333 KLH-KRLHTNERPY 345
+H ++ H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 81.8 bits (203), Expect = 6e-20
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGE--RPFQCNICTKSFTQLAHLQKHH-LVHTGEKPH 289
YEC +C+ F Q +K+H+ + E F C C + + L H H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 76.0 bits (188), Expect = 1e-17
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 303 NLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNE--RPYVCKGCNKRYISLSGL 360
+ + R HSG+KPY C +C ARFTQ +K+H E + C C+ S L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 361 R 361
Sbjct: 62 G 62
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 102 bits (256), Expect = 2e-27
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 246 SNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLK 305
+ H + ++P++C+ C SF +L H VHTGEKP+ C C +F+ +NLK
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 306 THMRLHSGQKPY 317
TH R+HSG+KPY
Sbjct: 63 THTRIHSGEKPY 74
Score = 98.7 bits (247), Expect = 3e-26
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKL 334
H H + +KP++C CQ F NL +H +H+G+KPY C +C A+F + +LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 335 HKRLHTNERPY 345
H R+H+ E+PY
Sbjct: 64 HTRIHSGEKPY 74
Score = 85.2 bits (212), Expect = 4e-21
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
Y+C+ C +F NL H H GE+P++CNIC F + A+L+ H +H+GEKP+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 69.0 bits (170), Expect = 3e-15
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 302 SNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
+ H + KPY C+ C A F +L HK +HT E+PY C C ++ + L+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 102 bits (256), Expect = 3e-27
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 247 NLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGE----KPHECIYCQKRFSSTS 302
+ RTH GE+P+ C+ C K+F Q L H + C C K F+ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 303 NLKTHMRLHSGQKPYHCEVC 322
+ H +G E
Sbjct: 62 TMARHADNCAGPDGVEGENS 81
Score = 95.7 bits (239), Expect = 7e-25
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSG----QKPYHCEVCPARFTQYV 330
HTGEKP+ C +C K F L H + + + C C FT+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 331 HLKLHKRLHTNERPYVCKGCNK 352
+ H +
Sbjct: 62 TMARHADNCAGPDGVEGENSGP 83
Score = 90.7 bits (226), Expect = 4e-23
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGE----RPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
Y C+ C KTF Q L +H + ++ F C+ C K+FT+ + +H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 289 HECIYCQKRF 298
E
Sbjct: 76 VEGENSGPSS 85
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 331 HLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
R HT E+PY C C+K + L
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLD 32
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 100 bits (253), Expect = 6e-27
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 243 GQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTS 302
G + R ++C+ C KSF+ + L KH HTGEKP++C C K F S
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 303 NLKTHMRLHSGQKPY 317
+L H R+H+G P
Sbjct: 61 HLIGHHRVHTGSGPS 75
Score = 92.9 bits (232), Expect = 5e-24
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 272 QLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVH 331
+ + ++C C K FS +S+L H R H+G+KPY C+ C F Q H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 332 LKLHKRLHTNERPY 345
L H R+HT P
Sbjct: 62 LIGHHRVHTGSGPS 75
Score = 85.2 bits (212), Expect = 4e-21
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
Y+C+ C K+F S+L H RTH GE+P++C+ C K+F Q +HL HH VHTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 64.8 bits (159), Expect = 1e-13
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 300 STSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSG 359
S+ + ++ Y C+ C F+ L H+R HT E+PY C C K +I S
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 360 L 360
L
Sbjct: 62 L 62
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 96.1 bits (240), Expect = 4e-25
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 255 HNGERPFQCNI--CTKSFTQLAHLQKHH-LVHTGEKPHEC--IYCQKRFSSTSNLKTHMR 309
+G C+ C + F+ +L H H +K C C K F+ +LK HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 310 LHSGQKPYHCEVC 322
LHS + Y CE
Sbjct: 62 LHSDTRDYICEFS 74
Score = 90.7 bits (226), Expect = 3e-23
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 283 HTGEKPHECIY--CQKRFSSTSNLKTHMRL-HSGQKPYHCE--VCPARFTQYVHLKLHKR 337
+G C + C + FS+ L H + H QK + C C F HLK H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 338 LHTNERPYVCKGCNKRY 354
LH++ R Y+C+
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 84.5 bits (210), Expect = 6e-21
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 233 YECNV--CYKTFGQLSNLKVHLR-THNGERPFQCN--ICTKSFTQLAHLQKHHLVHTGEK 287
C+ C + F L H + H ++ F C C KSF HL++H +H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 288 PHECIYCQKRF 298
+ C +
Sbjct: 68 DYICEFSGPSS 78
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 94.8 bits (237), Expect = 9e-25
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 248 LKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTH 307
H+GE+P+ C C K+F++ + L +H VHTGEKP++C+ C K FS S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 308 MRLHSGQKPY 317
R+H+
Sbjct: 62 QRIHTSGPSS 71
Score = 90.6 bits (226), Expect = 4e-23
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 276 LQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLH 335
+H+GEKP+ C+ C K FS +S L H R+H+G+KPY C C F+Q L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 336 KRLHTNERPY 345
+R+HT+
Sbjct: 62 QRIHTSGPSS 71
Score = 83.3 bits (207), Expect = 2e-20
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
Y C C K F + S L H R H GE+P++C C K+F+Q + L H +HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 62.5 bits (153), Expect = 6e-13
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 304 LKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
+HSG+KPY C C F++ L H+R+HT E+PY C C K + SGL
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 92.2 bits (230), Expect = 7e-24
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLV--HTGEKPHECIYCQKRFSSTSNLKTHMRL 310
T GE ++C +C++ +T +++ +H++ K + C +C K F+ N+ H+++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 311 HSG 313
Sbjct: 63 IHK 65
Score = 80.7 bits (200), Expect = 1e-19
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMR--LHSGQKPYHCEVCPARFTQYVHLKLHKRLHT 340
GE + C C + ++ SN H K Y C C FT+ ++ H ++
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 59.5 bits (145), Expect = 6e-12
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLHKR--LHTNERPYVCKGCNKRYISLSGLR 361
G+ Y C+VC +T + H N + Y C C K + +
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMT 57
Score = 41.4 bits (98), Expect = 1e-05
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNG 257
Y C C+K F + N+ H++ +
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 32.5 bits (75), Expect = 0.021
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 336 KRLHTNERPYVCKGCNKRYISLSGLR 361
+ E Y CK C++ Y +S
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFC 27
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 89.9 bits (224), Expect = 5e-23
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
+ + P +C+ C+ S + A L+ H +H ++P +C YC SNL HM+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 313 GQKPYHC 319
G
Sbjct: 62 GDMSGPS 68
Score = 86.0 bits (214), Expect = 2e-21
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 282 VHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTN 341
+ P +C C SS + L+ H R+H +P+ C C Q +L H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 342 ERPYVCKG 349
+ G
Sbjct: 63 DMSGPSSG 70
Score = 81.8 bits (203), Expect = 6e-20
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+C+ C + + L++H R H +RPF+CN C+ Q ++L KH G+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 59.0 bits (144), Expect = 8e-12
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
S P C C + L++H+R+H +RP+ C C+ S L
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLS 54
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 88.8 bits (221), Expect = 2e-22
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 261 FQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKP 316
+ C+ C K+F + L+ H HT + P+EC + C KRFS S LK H ++H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 317 YHCEVCPARFTQY-VHLKLHKRLH 339
+ C + ++LK H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 88.4 bits (220), Expect = 3e-22
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCN--ICTKSFTQLAHLQKHHLVHTGEKP 288
Y C+ C K F + + LKVH +H + P++C C K F+ + L++H VH G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 289 HECIYCQKRFSSTSNLKTHMR 309
+ C + + H+
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVA 82
Score = 72.7 bits (179), Expect = 2e-16
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 289 HECIY--CQKRFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERP 344
+ C + C K F + LK H H+ Q PY C E C RF+ LK H+++H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 345 YVCKGCNKRYISLSGLR 361
C+ + +
Sbjct: 62 KKDDSCSFVGKTWTLYL 78
Score = 26.0 bits (58), Expect = 6.8
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTH 255
C+ KT+ LK H
Sbjct: 65 DSCSFVGKTWTLY--LKHVAECH 85
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 82.8 bits (205), Expect = 3e-20
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHS---GQKPYHCEVCPARFTQYVHLKLHKRLH 339
+G +C C ++L H R H+ + CE C RF + + H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 340 TNERPYVCKGCNK 352
+ +
Sbjct: 62 HPALLLAPQESSG 74
Score = 82.8 bits (205), Expect = 3e-20
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 255 HNGERPFQCNICTKSFTQLAHLQKHHLVHT---GEKPHECIYCQKRFSSTSNLKTHMRLH 311
+G QC IC + Q A L H H C +C KRF ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 312 SGQKPYHCEVCPA 324
+
Sbjct: 62 HPALLLAPQESSG 74
Score = 72.4 bits (178), Expect = 2e-16
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTH---NGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
+C +C T Q ++L H R H F C C K F + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 290 EC 291
Sbjct: 68 AP 69
Score = 55.5 bits (134), Expect = 2e-10
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLHTN---ERPYVCKGCNKRYISLSGLR 361
SG CE+C Q L H+R H + C+ C KR+ +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVA 55
Score = 39.3 bits (92), Expect = 1e-04
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTK 268
+ C C K F + ++ H + +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 82.4 bits (204), Expect = 4e-20
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 245 LSNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTS 302
++NL ++ RP+ C + C + F++ L +H +HTG+KP +C C + FS +
Sbjct: 6 MNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 303 NLKTHMRLHS 312
+L TH+R H+
Sbjct: 64 HLTTHIRTHT 73
Score = 76.6 bits (189), Expect = 5e-18
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 273 LAHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYV 330
+ +L + V +P+ C C +RFS + L H+R+H+GQKP+ C +C F++
Sbjct: 6 MNNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 331 HLKLHKRLHT 340
HL H R HT
Sbjct: 64 HLTTHIRTHT 73
Score = 63.5 bits (155), Expect = 3e-13
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHT 284
Y C V C + F + L H+R H G++PFQC IC ++F++ HL H HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 58.9 bits (143), Expect = 1e-11
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 297 RFSSTSNLKTHMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKR 353
+NL ++ +PY C E C RF++ L H R+HT ++P+ C+ C +
Sbjct: 2 EPHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 78.3 bits (194), Expect = 8e-19
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHM-RLHSG 313
R F C +CT++F + HL++H+ HT EKP+ C C + F+ L H ++HSG
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 77.1 bits (191), Expect = 2e-18
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHL-VHTGEK 287
+ C VC + F + +LK H R+H E+P+ C +C ++FT+ L +H +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 66.4 bits (163), Expect = 2e-14
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLH-KRLHTNE 342
+ C C + F+ +LK H R H+ +KPY C +C FT+ L H +++H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 54.8 bits (133), Expect = 2e-10
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNK 352
+ + CEVC F + HLK H R HTNE+PY C CN+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNR 38
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 74.3 bits (183), Expect = 4e-17
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 246 SNLKVHLRTHNGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEKPHECIY--CQKRFSST 301
S + R C+ C K++ + +HL+ H HTGEKP C + C++RF+ +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 302 SNLKTHMRLH 311
L H R H
Sbjct: 63 DELSRHRRTH 72
Score = 67.8 bits (166), Expect = 8e-15
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 274 AHLQKHHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCEV--CPARFTQY 329
+ + + + H C + C K + +S+LK H R H+G+KP+ C C RF +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 330 VHLKLHKRLH 339
L H+R H
Sbjct: 63 DELSRHRRTH 72
Score = 58.9 bits (143), Expect = 1e-11
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 216 GYRSLPYPLKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGERPFQCNI--CTKSFT 271
G P + C+ C KT+ + S+LK H RTH GE+PF C+ C + F
Sbjct: 1 GSSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Query: 272 QLAHLQKHHLVH 283
+ L +H H
Sbjct: 61 RSDELSRHRRTH 72
Score = 55.9 bits (135), Expect = 1e-10
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 301 TSNLKTHMRLHSGQKPYHCEV--CPARFTQYVHLKLHKRLHTNERPYVC--KGCNKR 353
+S S + + C C + + HLK H R HT E+P+ C KGC +R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58
Score = 31.6 bits (72), Expect = 0.053
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 331 HLKLHKRLHTNERPYVCK--GCNKRYISLSGLR 361
+ + R ++C GC K Y S L+
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLK 36
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 74.4 bits (182), Expect = 1e-16
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 7/109 (6%)
Query: 244 QLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKH-----HLVHTGEKPHECIYCQKRF 298
S+ K++ G F+C C+ ++ L L H H + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 299 SSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLH--KRLHTNERPY 345
+L QK C C F L +H K H +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 61.3 bits (148), Expect = 4e-12
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLR-----THNGERPFQCNICTKSFTQLAHLQKHHLVH 283
G + C C + L L VH+ + N S + L +
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMR 309
+K +C+YC F S +L HM
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 59.4 bits (143), Expect = 2e-11
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 5/96 (5%)
Query: 271 TQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRL-----HSGQKPYHCEVCPAR 325
+ + + + + TG C C + + L HM + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 326 FTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
+ L + ++ C C + SL L
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLS 97
Score = 37.4 bits (86), Expect = 0.001
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 225 KKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHH 280
+ D N + + +L + ++ +C C SF L L H
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 32.4 bits (73), Expect = 0.056
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 198 PDDGSCGSPLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCYKTFGQLSNLKVHL--RTH 255
DD +P RSL K+D + +C C +F L +L VH+ H
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Query: 256 NGERPFQ 262
+
Sbjct: 106 YQKVSGP 112
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF+C+IC KSF + L +H +VHT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP +C C K F S L H +H+ +KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C++C F L H +HT E+P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C++C K+F S L H H E+P +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.026
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+P+ C C K + S L
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRL 28
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 3e-15
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+ ++C++C K F+Q +HLQ H VHTGEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 6e-13
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
GEK ++C C K FS +S+L+TH R+H+G+KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 59.8 bits (146), Expect = 3e-12
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ G+K Y C+VC F+Q HL+ H+R+HT E+P
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+VC K F Q S+L+ H R H GE+P +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.035
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
E+ Y C C K + S L
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHL 28
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 6e-15
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+ CN C KSF Q +HL +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 62.1 bits (152), Expect = 4e-13
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+ C C K F S+L H R+H+G+KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F Q HL H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y CN C K+F Q S+L H R H GE+P +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY+C C K +I S L
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHL 28
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 6e-15
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G++P++CN C K FTQ +HL +H +HTGEKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 61.0 bits (149), Expect = 9e-13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TG+KP++C C K F+ S+L H +H+G+KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FTQ HL H+ +HT E+P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 9e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S+L H H GE+P +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.039
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 335 HKRLHTNERPYVCKGCNK 352
T ++PY C C K
Sbjct: 3 SGSSGTGKKPYKCNECGK 20
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 7e-15
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C +C+K+FTQ AHL +H HTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+EC C K F+ ++L H + H+G+KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 58.3 bits (142), Expect = 9e-12
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+ +G+KPY C+VC FTQ HL H++ HT E+P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 6e-09
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC VC K F Q ++L H +TH GE+P +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.016
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY CK C+K + + L
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHL 28
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 67.2 bits (165), Expect = 7e-15
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKH-HLVHTGEKPHECIYCQKRFSS 300
+ + +P+ C C K F++ HL H VHT E+PH+C SS
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 63.8 bits (156), Expect = 1e-13
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHM-RLHSGQKPYHCEVCPARFTQ 328
+ KP+ C C K FS +L H+ ++H+ ++P+ C+V + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 58.0 bits (141), Expect = 1e-11
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLH-KRLHTNERPYVCKGCNK 352
+ S KPY C+ C F++ HL H K++HT+ERP+ C+
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 55.7 bits (135), Expect = 9e-11
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 233 YECNVCYKTFGQLSNLKVHL-RTHNGERPFQCNICTKSFTQ 272
Y C C K F + +L H+ + H ERP +C + +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 27.9 bits (63), Expect = 0.64
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ +PY+C+ C K + L
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHL 28
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.7 bits (164), Expect = 8e-15
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K+F ++L H HTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 63.3 bits (155), Expect = 2e-13
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP+EC CQK F++ SNL H R H+G+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 55.9 bits (136), Expect = 7e-11
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F +L +H+R HT E
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/31 (54%), Positives = 17/31 (54%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
YECN C K F SNL VH RTH GE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.027
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+PY C C K + + S L
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLM 29
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+P+ CN C K+F+Q + L H HTGEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
+GEKP+ C C K FS S L H R H+G+KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KPY C C F+Q L H+R HT E+P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y CN C KTF Q S L H RTH GE+P +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.054
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+PY C C K + S L
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSIL 28
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GERP +CN C KSF Q AHL +H +HTGEKP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 61.0 bits (149), Expect = 1e-12
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGE+PH+C C K F +++L H R+H+G+KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 7e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G++P+ C C F Q HL H+R+HT E+P
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++CN C K+F Q ++L H R H GE+P +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T ERP+ C C K +I + L
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHL 28
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+PF+C C K+F Q HL H +HTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
+GEKP +C C K F +L +H+R+H+G+KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 56.7 bits (138), Expect = 3e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KP+ C+ C F Q +HL H R+HT E+P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F Q +L HLR H GE+P +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.030
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+P+ CK C K + L
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHL 28
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 66.4 bits (163), Expect = 1e-14
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
+ GE+P++C C F Q+AHL+ H L+HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 62.9 bits (154), Expect = 2e-13
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
GEKP++C C RF ++L+ H+ +H+G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 60.2 bits (147), Expect = 2e-12
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
G+KPY CE C ARF Q HL+ H +HT P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 45.6 bits (109), Expect = 2e-07
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPF 261
Y+C C F Q+++L+ H+ H G P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.006
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
E+PY C+ C R++ ++ LR
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLR 28
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+PFQC C K FTQ +HL H VHTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 6e-13
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP +C C KRF+ S+L +H R+H+G+KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 1e-11
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KP+ CE C RFTQ HL H+R+HT E+P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F Q S+L H R H GE+P +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.050
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+P+ C+ C KR+ S L
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHL 28
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-14
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF+C C KS+ Q HL +H VHTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP +C C K ++ +L H R+H+G+KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 9e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C C + Q VHL H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K++ Q +L H R H GE+P +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K FTQ +HL +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F+ S+L H +H+G+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 56.7 bits (138), Expect = 3e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FTQ HL H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S+L H H GE+P +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.045
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K FTQ +HL +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 61.3 bits (150), Expect = 8e-13
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F+ S+L H +H+G+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 55.9 bits (136), Expect = 6e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FTQ HL H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S+L H H GE+P +
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.027
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-14
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+P++C+ C K+F + HL +H +HTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 62.1 bits (152), Expect = 4e-13
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
+GEKP++C C K F ++L H R+H+G +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KPY C C F ++ HL H+R+HT RP
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+ C K F + ++L H R H G RP +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 31.7 bits (73), Expect = 0.023
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+PY C C K + + L
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHL 28
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-14
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+PF+C C K FTQ + L H VHTGEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP +C C KRF+ S L +H R+H+G+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 9e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KP+ CE C RFTQ L H+R+HT E+P
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F Q S L H R H GE+P +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.023
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
+ E+P+ C+ C KR+ S L
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLH 29
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.6 bits (161), Expect = 2e-14
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G +P+ CN C K+F ++L H HTGE
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 63.7 bits (156), Expect = 1e-13
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TG KP+ C C K F S S L H R H+G+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G KPY C C F +L +H R HT E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
Y CN C K F S L +H RTH GE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T +PYVC C K + S S L
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLI 29
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-14
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K FTQ +HL +H VHTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 61.8 bits (151), Expect = 5e-13
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F+ S+L H R+H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FTQ HL H+R+HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S+L H R H G +P +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 31.3 bits (72), Expect = 0.039
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+ CN+C K+F AHL +H VHT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 63.3 bits (155), Expect = 2e-13
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+ C C K F +++L H+R+H+ +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+G+KPY C VC F HL H R+HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y CNVC K F ++L HLR H E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 31.7 bits (73), Expect = 0.028
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 335 HKRLHTNERPYVCKGCNK 352
T E+PY C C K
Sbjct: 3 SGSSGTGEKPYSCNVCGK 20
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+P++CN C K FTQ +HL H +HTGEKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 61.7 bits (151), Expect = 6e-13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP++C C K F+ S+L H R+H+G+KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KPY C C FTQ HL H R+HT E+P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S+L H R H GE+P +
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.036
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+PY C C K + S L
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHL 28
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 3e-14
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +G++P++C C K+F Q+ HL +H VHTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 59.1 bits (144), Expect = 6e-12
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
+G+KP+EC C+K F +L H R+H+G++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+ SG+KPY C+ C F Q HL HKR+HT ER
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
GK YEC C KTF Q+ +L H R H GER +
Sbjct: 9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 29.4 bits (67), Expect = 0.19
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ ++PY CK C K +I + L
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHL 28
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K FTQ +HL H +HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F+ S+L H R+H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FTQ HL H+R+HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S+L H R H G +P +
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 31.3 bits (72), Expect = 0.036
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHL 28
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C+ C K F + +HL +H L+HTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F S+L H +H+G+KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 55.9 bits (136), Expect = 7e-11
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F + HL H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+ C K F + S+L H H GE+P +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C +C K+F +HL +HH VH+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 61.4 bits (150), Expect = 7e-13
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP++C C K F +S+L H +HSG++P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+G+KPY C+VC F HL H +H+ ERP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C VC K F S+L H H+GERP +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C+ C K + S L
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHL 28
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE P++C+ C K+F++ L H H GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 61.4 bits (150), Expect = 7e-13
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGE P+EC C K FS L +H R H+G+KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+ PY C C F++ L H+R H E+P
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 49.8 bits (120), Expect = 1e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC+ C K F + L H RTH GE+P +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.046
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 335 HKRLHTNERPYVCKGCNK 352
T E PY C C K
Sbjct: 3 SGSSGTGENPYECHECGK 20
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 64.9 bits (159), Expect = 4e-14
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+P++CN C K+F + L H H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 58.3 bits (142), Expect = 8e-12
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP+EC C K F S L H R H+G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KPY C C F L +H+R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
YECN C K F S L VH RTH G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.1 bits (74), Expect = 0.019
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
+ E+PY C C K +I S L
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLI 29
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 4e-14
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C C K+F Q A+L +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 5e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP+ C C K F+ +NL H R+H+G+KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F Q +L H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C C K F Q +NL H R H GE+P +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.021
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + + L
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANL 28
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 64.8 bits (159), Expect = 4e-14
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP EC C K FS +S L TH R+H+G+KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 63.3 bits (155), Expect = 2e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF+C C KSF+ + L H +HTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C C F+ L H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
+EC C K+F S L H R H GE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.047
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+P+ C C K + S L
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQL 28
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 64.8 bits (159), Expect = 4e-14
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
GEKP+ C C RF LK+H+R+H+G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 62.9 bits (154), Expect = 2e-13
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
+ GE+P+ C IC F L L+ H +HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 57.5 bits (140), Expect = 1e-11
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
G+KPY CE+C RF LK H R+HT P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.6 bits (117), Expect = 2e-08
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPF 261
Y C +C F L LK HLR H G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.014
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
E+PY C+ C R+ L L+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLK 28
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G++ F+CN C K+FTQ + L H +HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 62.1 bits (152), Expect = 5e-13
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
G+K +C C+K F+ +S+L H R+H+G+KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+K + C C FTQ L +H+R+HT E+P
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++CN C KTF Q S+L VH R H GE+P +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.095
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
++ + C C K + S L
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSL 28
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 5e-14
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C++C K+F+ A L +H VH+GEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+EC C+K FS ++L H R+HSG+KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C+VC F+ + L H+R+H+ E+P
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC+VC K F ++L H R H+GE+P +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + + L
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASL 28
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 64.5 bits (158), Expect = 5e-14
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF+C C K F++ + L HH +HTGEKP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP +C+ C K FS S L H +LH+G+KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 1e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C C F++ L +H +LHT E+P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F + S L VH + H GE+P +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.066
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+P+ C C K + S L
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALN 29
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 64.5 bits (158), Expect = 5e-14
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C C K+F+Q HL +H VHTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 62.1 bits (152), Expect = 4e-13
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP+EC C K FS T++L H R+H+G+KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C+ C F+Q HL H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC C K F Q ++L H R H GE+P +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.031
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY CK C K + + L
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHL 28
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+P++C C K + + L H VHTGEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 62.9 bits (154), Expect = 2e-13
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP++C+ C K + +L H R+H+G+K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KPY C C + + + L H+R+HT E+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C C K + + +L H R H GE+ +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 31.3 bits (72), Expect = 0.032
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
+ E+PY C C K Y L
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLD 29
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GERP+ CN C K+F + +HL +H H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GE+P+ C C K F S+L H++ H +K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
SG++PY C C F ++ HL H + H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y CN C K FG+ S+L HL+ H E+ +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.6 bits (70), Expect = 0.057
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ ERPY C C K + S L
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHL 28
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G+RP++C C K+F + L H HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TG++P+ECI C K F + S+L H R H+G+KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+ +GQ+PY C C F L H+R HT E+P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC C K F S+L H R+H GE+P +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.013
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T +RPY C C K + + S L
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSL 28
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G +P+QCN C K+F+Q + L +H VHTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 2e-13
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TG KP++C C K FS TS L H R+H+G+KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G KPY C C F+Q L H+R+HT E+P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S L H R H GE+P +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T +PY C C K + S L
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKL 28
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 7e-14
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GERP+ C +C K+FT ++L KH +HTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGE+P+ C C K F+ SNL H ++H+G+KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G++PY C VC FT +L H+++HT E+P
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C VC K F SNL H + H GE+P +
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T ERPY+C C K + S L
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNL 28
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 7e-14
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GERPF+CN C K F + +HL H +H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 59.9 bits (146), Expect = 3e-12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GE+P +C C K F S+L H+RLHS +K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG++P+ C C F + HL H RLH+ E+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++CN C K FG+ S+L HLR H+ E+ +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 28.3 bits (64), Expect = 0.38
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ ERP+ C C K + S L
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHL 28
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 64.1 bits (157), Expect = 7e-14
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G++PF+C C KSF +L H +HTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TG+KP EC +C K F + NL TH R+H+G+K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKG 349
+ +GQKP+ C C F +L H+R+HT E+ G
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+EC C K+F NL H R H GE+ +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 31.0 bits (71), Expect = 0.039
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T ++P+ C C K + + L
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNL 28
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 7e-14
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C+ C K+FT+ + L H HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 61.8 bits (151), Expect = 6e-13
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP++C C K F+ S L H + H+G++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 56.4 bits (137), Expect = 5e-11
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKG 349
+ +G+KPY C C FT+ L +H++ HT ER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+ C K F + S L +H ++H GER +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+PY C C K + SGL
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLH 29
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 7e-14
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K+F+Q + L +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K FS TS L H R+H+G+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F+Q L H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F Q S L H R H GE+P +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.033
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKL 28
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+P+ C+ C K+F A L +H +HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP+ C YC K F ++ L H R+H+G+KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KPY C+ C F L H+R+HT E+P
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C+ C K FG + L H R H GE+P +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+PYVC C K + + L
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAEL 28
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF C C K+F+ L +H +HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP +CI C K FS L H R+H+G+KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C C F+ ++ L H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F L H R H GE+P +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+P+ C C K + GL
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGL 28
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+ C+ C K+F+ ++L H H+GEKP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 63.0 bits (154), Expect = 2e-13
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
GEKP+ C C K FSS S L HMR HSG+KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 56.8 bits (138), Expect = 4e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F+ +L +H R H+ E+P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
Y C+ C K F S L +H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 31.8 bits (73), Expect = 0.028
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
E+PY C C K + S S L
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYL 28
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GER ++C+ C K+F + + L H +HTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 61.7 bits (151), Expect = 5e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGE+ +EC C K F+ S L H R+H+G+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G++ Y C C F + L +H+R+HT E+P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 3e-08
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
G+ HYEC+ C K F + S L +H R H GE+P +
Sbjct: 9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T ER Y C C K + S L
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTL 28
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP++C C K ++S NL H ++H+G++P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C C K + +L H VHTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 57.2 bits (139), Expect = 2e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY CE C + +L +H+++HT ERP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C C K + NL +H + H GERP +
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 32.1 bits (74), Expect = 0.016
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C+ C K Y S L
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNL 28
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C C K F L HH+VHTGEKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F +L TH +H+G+KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY CE C F L H +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C C K F +L H H GE+P +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.011
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+PY C+ C K +I L
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLY 29
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE PF C+ C K FT +L H +HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 60.2 bits (147), Expect = 2e-12
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGE P C C K F+ +NL H ++H+G++P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+ P+ C C FT +L +H+++HT ERP
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 48.6 bits (117), Expect = 3e-08
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+ C+ C K F +NL +H + H GERP +
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 32.1 bits (74), Expect = 0.021
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E P++C C K + + L
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNL 28
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+ C C K F S L+ H R+H+G+KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+ C C K+F + LQ+H +HTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 5e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY+CE C F L+ H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C C K F S L+ H R H GE+P +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C+ C K +I S L
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQL 28
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKPHEC C K FS S L H R+H+G+ P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 61.8 bits (151), Expect = 6e-13
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P +C C KSF+ + L H +HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C C F+ L +H+R+HT E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 47.5 bits (114), Expect = 7e-08
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+EC C K+F S L VH R H GE P +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 31.0 bits (71), Expect = 0.051
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+P+ C+ C K + S L
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQL 28
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C+IC KSFT+ + L H +HTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 62.6 bits (153), Expect = 3e-13
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP+EC C K F+ S L H ++H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+ +G+KPY C +C FT+ L +H+++HT E+P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC++C K+F + S L VH + H GE+P +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQL 28
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C+ C KSFT + L+ H HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 61.0 bits (149), Expect = 9e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP++C C K F+ S L+ H + H+G++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 56.0 bits (136), Expect = 7e-11
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FT L++H++ HT ER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+ C K+F S L++H + H GER +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 32.1 bits (74), Expect = 0.019
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+PY C C K + S LR
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLR 29
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+ C C K+FT ++L KH +HT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+ C C K F+ SNL H ++H+ QKP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FT +L H+++HT ++P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C C K F SNL H + H ++P +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY+C C K + S L
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNL 28
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+ ++CN C K F++ + L +H +HTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 2e-13
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEK ++C C K FS S L H ++H+G+KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+K Y C C F++ L H+++HT E+P
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F + S L H + H GE+P +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.030
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+ Y C C K + S L
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQL 28
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C+ C KSF + + L H +HTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP+EC C K F S L H R+H+G+ P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 54.9 bits (133), Expect = 2e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F + L +H+R+HT E P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC+ C K+F + S L VH R H GE P +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K +I S L
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQL 28
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G +P+ C+ C K+F+ + L H HTG KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TG KP+ C C K FS S L H R H+G KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G KPY C C F+ L +H+R HT +P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C+ C KTF S L VH R+H G +P +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 31.3 bits (72), Expect = 0.037
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T +PY C C K + S L
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQL 28
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ + E+P++C C K + + +L H VH GEK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 62.1 bits (152), Expect = 4e-13
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+ EKP++C C K ++ NL H R+H G+K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 56.7 bits (138), Expect = 3e-11
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNK 352
+ S +KPY CE C + + ++L +H+R+H E+ G +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTS---GPSS 45
Score = 48.3 bits (116), Expect = 4e-08
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C C K + + NL +H R H GE+ +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
+ E+PY C+ C K Y L
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNL 28
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 1e-13
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K+F ++L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F + SNL TH +H+G+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 6e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F + +L H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F SNL H H GE+P +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.029
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNL 28
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K F ++L +H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 5e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C C K F S L H R+H+G+KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F +L H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F S L H R H GE+P +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.040
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYL 28
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 63.4 bits (155), Expect = 2e-13
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+ C C K F S L H R+HSG+KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 62.6 bits (153), Expect = 3e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+ C C KSF + L KH VH+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+ +G+KPY+C+ C F L H+R+H+ E+P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 47.6 bits (114), Expect = 7e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C C K+F S L H R H+GE+P +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY CK C K + S L
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCL 28
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+ C C K F+ SNL TH ++H+G+KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 62.9 bits (154), Expect = 2e-13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C C K+FT ++L H +HTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C FT +L H+++HT E+P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
Y C C K F SNL H + H GE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.031
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLF 29
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+ + C C KSF++ L KH +H+GEKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEK + C C K FS L H RLHSG+KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+K Y+C+ C F++ L H+RLH+ E+P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y C C K+F + L H R H+GE+P +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+ Y CK C K + L
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCL 28
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GER ++C+ C K+F Q + L H +H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGE+ +EC C K F S L H R+H G+KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G++ Y C C F Q L +H+R+H E+P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
G+ HYEC+ C K F Q S L +H R H GE+P +
Sbjct: 9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T ER Y C C K +I S L
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTL 28
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF+C+ C K+F ++L H HTGEKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 61.7 bits (151), Expect = 6e-13
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP EC CQK F++ SNL H R H+G+KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 3e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C C F +L +H+R HT E+P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
+EC+ C K F SNL VH RTH GE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.056
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+P+ C C K + + S L
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNL 28
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K+F+ + L H +HTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+EC C K FS S+L TH +H+G+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCK 348
+ +G+KPY C C F+ L H+ +HT ++P
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YECN C K F S+L H H G++P +
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 31.0 bits (71), Expect = 0.045
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S L
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSL 28
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++CN C K+F + L H H+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 61.8 bits (151), Expect = 5e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP++C C K F + S+L H HSG+KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F L +H+ H+ E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+CN C K F S+L +H TH+GE+P +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.049
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+PY C C K + + S L
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLA 29
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 63.6 bits (154), Expect = 2e-13
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
Y C C + S LK H+RTH RP+ C C SF +L KH K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 58.2 bits (140), Expect = 2e-11
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
+ C C + + L+KH HT +P+ C YC F + NL HM+ + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 55.5 bits (133), Expect = 1e-10
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
+ C C R S LK H+R H+ +PYHC C F +L H + + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 42.0 bits (98), Expect = 8e-06
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGLR 361
Y CE C R + LK H R HT+ RPY C CN + + L
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLT 46
Score = 34.3 bits (78), Expect = 0.005
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 224 LKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGER 259
++ Y C C +F NL H+++ +
Sbjct: 21 IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 64.6 bits (157), Expect = 2e-13
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 254 THNGERPFQCNICTKSFTQLAHLQKH-HLVHTGEKPHECIYCQ--------KRFSSTSNL 304
+ C ++F+ + L H + H G C K F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 305 KTHMRLHSGQKPYHC 319
H+R+H+G+K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 60.8 bits (147), Expect = 4e-12
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHL-RTHNGERPFQ--------CNICTKSFTQLAHLQKH 279
++ C +TF + L H+ H G C KSF L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 280 HLVHTGEKPHEC 291
VHTGEK
Sbjct: 82 IRVHTGEKSGPS 93
Score = 29.9 bits (67), Expect = 0.31
Identities = 7/42 (16%), Positives = 10/42 (23%), Gaps = 1/42 (2%)
Query: 310 LHSGQKPYHCEVCPARFTQYVHLKLH-KRLHTNERPYVCKGC 350
+ Q + C F+ L H H C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G + F+C C K+FT+ + L H +HTGEKP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 62.2 bits (152), Expect = 4e-13
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TG K EC C K F+ S L H ++H+G+KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G K + C C FT+ L +H+++HT E+P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
G H+EC C K F + S L +H + H GE+P +
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.038
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T + + C C K + S L
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTL 28
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 250 VHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C++C K+F+ L H +H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 62.1 bits (152), Expect = 4e-13
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP+EC C K FS +L H R+HSG+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+G+KPY C VC F+ L +H+R+H+ ++P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
YEC+VC K F +L VH R H+G++P +
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.9 bits (71), Expect = 0.040
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + L
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSL 28
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 2e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP++C C K F S+L H R+H+G+KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 3e-13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C++C KSF + L H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C+VC F L +H+R+HT E+P
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+VC+K+F S+L VH R H GE+P +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C+K + S L
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSL 28
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.0 bits (154), Expect = 2e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+PF+C C K F + H H+GEKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 61.8 bits (151), Expect = 5e-13
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
+GEKP +C C K F + S +H R HSG+KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 55.3 bits (134), Expect = 1e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ SG+KP+ CE C F H+R H+ E+P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C K F S H R+H+GE+P +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 31.8 bits (73), Expect = 0.021
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
+ E+P+ C+ C K + + S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCY 29
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 3e-13
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TG KP+ C C K FS S+L TH +H+G+KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 62.2 bits (152), Expect = 4e-13
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G +P+ CN C K+F+ + L H ++HTGEKP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G KPY C C F+ Y L H+ +HT E+P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y CN C K F S+L H H GE+P +
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T +PY+C C K + S L
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSL 28
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P+QC+ C KSF+ L +H + HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 61.0 bits (149), Expect = 1e-12
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
GEKP++C C K FS + L H H+ +KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ G+KPY C C F+ L H HT E+P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.2 bits (113), Expect = 9e-08
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C+ C K+F L H TH E+P +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 28.7 bits (65), Expect = 0.30
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
E+PY C C K + L
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRL 28
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P++C C K+F + +H +HTG++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 61.8 bits (151), Expect = 5e-13
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP++C+ C K F S+ H RLH+GQ+P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 54.9 bits (133), Expect = 2e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KPY C C F H+RLHT +RP
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
Y+C C K FG S+ H R H G+RP +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 32.2 bits (74), Expect = 0.017
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+PY C C K + S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSC 28
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 6e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ + + QC+ C + FT +HL +H +HTGEKP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 57.6 bits (140), Expect = 1e-11
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+ K H+C C + F+ S+L H R+H+G+KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ S K + C C FT HL H+R+HT E+P
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
++C+ C + F S+L H R H GE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.26
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
++ + + C C + + S L
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHL 28
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 6e-13
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+ ++C C F+Q + L+ H VH GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 59.5 bits (145), Expect = 4e-12
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
GEK +C C FS S+L+ H +H G+KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ G+K + C C F+Q L+LH+ +H E+P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 47.5 bits (114), Expect = 7e-08
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
++C C F Q S+L++H H GE+P +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
E+ + C+ C+ + S LR
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLR 29
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 7e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ G P++C+ C KSF+ L H +HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 59.9 bits (146), Expect = 3e-12
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
G P++C C+K FS L H R+H+ +KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G PY C C F+ + L +H+R+HT E+P
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
G Y+C+ C K+F L VH R H E+P +
Sbjct: 9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 28.7 bits (65), Expect = 0.33
Identities = 6/27 (22%), Positives = 7/27 (25%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
PY C C K + L
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLL 29
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 61.4 bits (150), Expect = 7e-13
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHH-LVHTGEKPHEC 291
+ G++P++C C K+F Q L +H HTGEKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 57.6 bits (140), Expect = 2e-11
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRL-HSGQKPYHC 319
TG+KP+ECI C K F ++L H R H+G+KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRL-HTNERPYVC 347
+ +G+KPY C C F Q L H R HT E+P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 233 YECNVCYKTFGQLSNLKVHLR-THNGERPFQCN 264
YEC C K F Q ++L H R H GE+P +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.9 bits (76), Expect = 0.009
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T ++PY C C K +I + L
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSL 28
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 8e-13
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
GE+ H C C K F SN H R+H+G+KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 1e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GER +C+ C K F Q ++ +H +HTGEKP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ G++ + C C F Q + H+R+HT E+P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 7e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+ C+ C K F Q SN H R H GE+P +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.031
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
ER + C C K ++ S
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNF 28
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 9e-13
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+P +C C K+F + L H H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 59.5 bits (145), Expect = 4e-12
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP +C C K F S L H R H K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP C C F L +H+R H +++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+C C K F S L +H RTH ++ +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 29.1 bits (66), Expect = 0.20
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E+P C C K + S L
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQL 28
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 61.0 bits (149), Expect = 1e-12
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+GE P++C+ C K+F + L H H GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 58.7 bits (143), Expect = 7e-12
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GE P+EC C K F+ L +H R H+G+
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 49.8 bits (120), Expect = 1e-08
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
SG+ PY C C F + L H+R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
YEC+ C K F + L H RTH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 27.1 bits (61), Expect = 1.0
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 336 KRLHTNERPYVCKGCNKRYISLSGL 360
+ E PY C C K + L
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQL 26
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 60.8 bits (148), Expect = 1e-12
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 251 HLRTHNGERPFQCN--ICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PF C C F++ L +H H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 59.6 bits (145), Expect = 3e-12
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 279 HHLVHTGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQKPYHCE 320
TGEKP C + C RFS + L H R HSG KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 56.2 bits (136), Expect = 6e-11
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 306 THMRLHSGQKPYHC--EVCPARFTQYVHLKLHKRLHTNERPYVCKG 349
+ +G+KP+ C C RF++ L H+R H+ +P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 42.3 bits (100), Expect = 5e-06
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGERPFQCN 264
+ C C F + L H R+H+G +P +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 1e-12
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE+PFQC C +F+ L KH H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 60.3 bits (147), Expect = 2e-12
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGEKP +C C FS + +L H+R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+KP+ C+ C F+ L H R H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
++C C F +L HLR+H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 32.9 bits (76), Expect = 0.009
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
T E+P+ CK C + L
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLF 29
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 59.5 bits (145), Expect = 3e-12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 282 VHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP C C+K FSS S L H + H+ +KP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 58.3 bits (142), Expect = 9e-12
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+GE+PF C+ C K+F+ ++L H H EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+ C+ C K F S L VH +TH E+P +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 49.8 bits (120), Expect = 8e-09
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
SG+KP+ C C F+ +L +H++ H E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.2 bits (56), Expect = 4.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 336 KRLHTNERPYVCKGCNKRYISLSGL 360
+ E+P+ C C K + S S L
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYL 26
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 59.5 bits (145), Expect = 4e-12
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
GEKP+ C C K FS +L H+R+H+G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 59.1 bits (144), Expect = 4e-12
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
+ GE+P++C+ C K+F+Q L H VHTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
G+KPY C+ C F+Q L +H R+HT P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 44.5 bits (106), Expect = 7e-07
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPF 261
Y C+ C K F Q +L VH+R H G P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 31.0 bits (71), Expect = 0.036
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
E+PY C C K + L
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSL 27
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.4 bits (145), Expect = 4e-12
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ GE P++C C K F++ L H H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 57.1 bits (139), Expect = 2e-11
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
TGE P+EC C K FS L +H + HSGQ
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ +G+ PY C C F++ L H++ H+ +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
YEC C K F + L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.0 bits (66), Expect = 0.23
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T E PY C C K + L
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQL 28
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 58.5 bits (141), Expect = 1e-11
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 243 GQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTS 302
G + + H G+R +C+ C F + + + K C C+K +
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEA 53
Query: 303 NLKTHMRLHSGQKPY 317
L SG+K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 55.4 bits (133), Expect = 2e-10
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 274 AHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLK 333
K +H G++ +C C F S S +K CE C Q L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALN 56
Query: 334 LHKRLHTNERPY 345
+ + ++
Sbjct: 57 KDEGNESGKKTS 68
Score = 47.3 bits (112), Expect = 2e-07
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
G +C+ C F + S T + + C C K Q A L K +G+K
Sbjct: 15 GDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKT 67
Query: 289 H 289
Sbjct: 68 S 68
Score = 43.1 bits (101), Expect = 5e-06
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 300 STSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSG 359
S+ + ++H G + C C F + + + +C+ C K +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAA 54
Query: 360 L 360
L
Sbjct: 55 L 55
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 279 HHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCE 320
+GEK H C C K F S L+ H R+H G+K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ +GE+ C+ C K+F ++ L+ H VH GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 48.0 bits (115), Expect = 4e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
SG+K + C+ C F L++H+R+H E+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 41.8 bits (99), Expect = 6e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQCN 264
+ C+ C K F +S L++H R H GE+ +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.0 bits (71), Expect = 0.048
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGLR 361
+ E+ + C C K + +S LR
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALR 29
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.8 bits (138), Expect = 3e-11
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+ + + CN C K+FT++ HL +H +HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 50.3 bits (121), Expect = 7e-09
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
T K + C C K F+ +L H ++H+ +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
+ K Y+C C FT+ HL H+++HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
Y CN C K F ++ +L H + H +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 31.4 bits (72), Expect = 0.027
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
T+ + Y C C K + + L
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHL 28
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 55.7 bits (135), Expect = 8e-11
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
+ GE P+ C C KSFTQ L H + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 53.8 bits (130), Expect = 4e-10
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
GE P+ C C K F+ +L H R S P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 47.7 bits (114), Expect = 6e-08
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
G+ PY C C FTQ L +H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 44.6 bits (106), Expect = 7e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPF 261
Y C C K+F Q +L VH R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 27.6 bits (62), Expect = 0.77
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 335 HKRLHTNERPYVCKGCNKRYISLSGL 360
E PY+C C K + L
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSL 27
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 54.9 bits (133), Expect = 1e-10
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPH 289
+G+R ++C C KSF Q L H +HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPY 317
+G++ +EC C K F +L H R+H+G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 47.2 bits (113), Expect = 7e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPY 345
SGQ+ Y C+ C F Q L LH+R+HT P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPF 261
YEC C K+F Q +L +H R H G P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 25.6 bits (57), Expect = 3.3
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 336 KRLHTNERPYVCKGCNKRYISLSGL 360
+ +R Y C+ C K + L
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSL 26
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.6 bits (124), Expect = 2e-09
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHEC 291
+GE+P+ C C ++F+ L +H +HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 48.1 bits (115), Expect = 4e-08
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHC 319
+GEKP+ C C++ FS + L H ++H+ +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 42.7 bits (101), Expect = 3e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVC 347
SG+KPY C C F+ L H+++HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.5 bits (85), Expect = 5e-04
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERPFQC 263
Y C C +TF + L H + H +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.1 bits (58), Expect = 2.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 339 HTNERPYVCKGCNKRYISLSGL 360
+ E+PY C C + + + L
Sbjct: 5 SSGEKPYSCAECKETFSDNNRL 26
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 50.3 bits (120), Expect = 7e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 253 RTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYC 294
+ + C IC K F + HL +H L H+GEKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 47.2 bits (112), Expect = 8e-08
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 309 RLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCN 351
+K CE+C F HL HK H+ E+PY +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 46.5 bits (110), Expect = 2e-07
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 225 KKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICT 267
+ C +C K F + +L H +H+GE+P+ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 46.5 bits (110), Expect = 2e-07
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVC 322
K C C K F +L H HSG+KPY
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 49.5 bits (118), Expect = 1e-08
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHE 290
+ GE PF+C+ C + FTQ +L +H H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 41.4 bits (97), Expect = 9e-06
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 278 KHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
GE P +C C + F+ + L H R H+ +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 39.5 bits (92), Expect = 5e-05
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 306 THMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
+ +G+ P+ C C FTQ +L H+R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.1 bits (78), Expect = 0.004
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
++C+ C + F Q + L H RTH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.7 bits (115), Expect = 1e-07
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Query: 223 PLKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLV 282
+ K Y+C +C L H R C C+ F + H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELK-QEHES 63
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTH 307
K C+ C + F S+ ++ H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 46.0 bits (108), Expect = 9e-07
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 285 GEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
++ ++C C + SS +H RL + C C RF + H+ +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 345 YVCKGCNKRYISLSGLR 361
C C + + S +
Sbjct: 70 LTCLECMRTFKSSFSIW 86
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 46.2 bits (110), Expect = 2e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 251 HLRTHNGERPFQCNICTKSFTQLAHLQKHHLVH 283
R G +PFQC C +SF++ HL H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 44.6 bits (106), Expect = 6e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 307 HMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLH 339
R +G KP+ C C F++ HL LH++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 43.9 bits (104), Expect = 1e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLH 311
TG KP +C C + FS + +L H + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.035
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 335 HKRLHTNERPYVCKGCNKRY 354
R T +P+ C C++ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSF 21
Score = 28.1 bits (63), Expect = 0.41
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTH 255
++C C ++F + +L +H + H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 47.6 bits (112), Expect = 4e-07
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 242 FGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSST 301
S+ L F C +C F+ L++H E C C+K F+ST
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Query: 302 SNLKTHMR 309
+ H+
Sbjct: 114 DSALDHVC 121
Score = 47.6 bits (112), Expect = 5e-07
Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 248 LKVHLRTHNGERPFQCN----ICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSN 303
+ H T +R + I + L C C FSS+ +
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 304 LKTHMRLHSGQKPYHCEVCPARFTQYVHLKLH 335
LK H+R + C VC FT H
Sbjct: 90 LKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 42.6 bits (99), Expect = 2e-05
Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 14/119 (11%)
Query: 246 SNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECI----YCQKRFSST 301
S K +L H G T + H L ++ I +
Sbjct: 8 SGSKKYLSNHKG--------IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDE 59
Query: 302 SNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
S+ + + C +C F+ V LK H R E VC C K + S
Sbjct: 60 SSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSA 116
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 42.7 bits (101), Expect = 2e-06
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
R F C +CT++F + HL++H+ HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 38.5 bits (90), Expect = 7e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNER 343
+ + CEVC F + HLK H R HTNE+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 37.3 bits (87), Expect = 2e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
+ C C + F+ +LK H R H+ +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.1 bits (76), Expect = 0.005
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
+ C VC + F + +LK H R+H E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.8 bits (105), Expect = 3e-05
Identities = 20/168 (11%), Positives = 44/168 (26%), Gaps = 17/168 (10%)
Query: 93 SARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQSPPQS 152
S R ++ Q S + P + + + + +
Sbjct: 48 SNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQ 107
Query: 153 NGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSLSPDDGSCGSPLSPNSQ 212
S + + I++ + S ++ + GS P+S
Sbjct: 108 KQAKDTDKSKAQVTYSDTGINNA--------NELSRSG----NVDNEGGSNQKPMSTRIA 155
Query: 213 GSRGYRSLPYPL-----KKKDGKMHYECNVCYKTFGQLSNLKVHLRTH 255
+ +P Y+C+VC +L H+ +H
Sbjct: 156 EATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.8 bits (84), Expect = 0.012
Identities = 23/193 (11%), Positives = 52/193 (26%), Gaps = 20/193 (10%)
Query: 127 SGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSF 186
G L+ ++ GP+ + P +S + + P++++
Sbjct: 25 DGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATES-------AELPMKNND 77
Query: 187 KPSHHSPRSLSPDDGSCGSPLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCYKTFGQLS 246
+ + + D + S + + ++ K +
Sbjct: 78 EGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVT------YSDTGINNAN 131
Query: 247 NLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP-------HECIYCQKRFS 299
L N Q + T+ + + H G P ++C C
Sbjct: 132 ELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLF 191
Query: 300 STSNLKTHMRLHS 312
S +L H+ H
Sbjct: 192 SPLDLDAHVASHG 204
Score = 34.4 bits (78), Expect = 0.068
Identities = 10/46 (21%), Positives = 11/46 (23%)
Query: 294 CQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLH 339
S S Y C VC A + L H H
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 27.9 bits (61), Expect = 6.4
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 319 CEVCPARFTQYVHLKLHKRLHTNERPYVCKGCNKRYISLSGL 360
E A +++ ++ Y C C+ S L
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDL 196
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 38.9 bits (91), Expect = 5e-05
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 284 TGEKPHECIY--CQKRFSSTSNLKTHMRLHSGQK 315
+K H C C K + TS+L+ H+R H+G++
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 36.6 bits (85), Expect = 4e-04
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGER 259
+ C++ C K +G+ S+L+ HLR H GER
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 36.6 bits (85), Expect = 4e-04
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 256 NGERPFQCNI--CTKSFTQLAHLQKHHLVHTGEK 287
++ C+I C K + + +HL+ H HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 31.2 bits (71), Expect = 0.035
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 312 SGQKPYHCEV--CPARFTQYVHLKLHKRLHTNER 343
+K + C + C + + HL+ H R HT ER
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 44.3 bits (104), Expect = 5e-05
Identities = 52/207 (25%), Positives = 68/207 (32%), Gaps = 41/207 (19%)
Query: 16 STSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPS 75
+ SP SPG + SP +P+S + + S
Sbjct: 1527 AASPYKGVQSPGYTSPFSSAMSPG-YGLTSPSYSPSSPGYSTSPAYMPSSPSY------S 1579
Query: 76 LNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSG 135
SP SPT +YS P SP S SP S + S S S
Sbjct: 1580 PTSPSYSPTSPSYS----------PTSP---------SYSP--TSPSYSATSPSYSPTSP 1618
Query: 136 YHSSNGPSIIIQSP---PQSNGNYSPPSS----SSNIYSQQPPIHH-LMTVMPPLQHSFK 187
+S PS SP P S +YSP S +S YS P + P S+
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1677
Query: 188 PSHHSPRSLSPDDGSCGSPLSPNSQGS 214
P+ S SP SP SP+ +
Sbjct: 1678 PTSPSYSPTSPS----YSPTSPSYSPT 1700
Score = 38.5 bits (89), Expect = 0.004
Identities = 49/196 (25%), Positives = 65/196 (33%), Gaps = 50/196 (25%)
Query: 15 HSTSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIP 74
+TSP P+SP SP+ P +PTS
Sbjct: 1607 SATSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSP-------------------SY 1641
Query: 75 SLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQS 134
S SP SPT +YS S Y S T + + +Y P+ S
Sbjct: 1642 SPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT------S 1694
Query: 135 GYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPR 194
+S PS SP +YSP +S YS P + P S+ P+ S
Sbjct: 1695 PSYSPTSPSYSPTSP-----SYSP---TSPSYSPTSPSY------SPTSPSYSPTSPSYS 1740
Query: 195 SLSPDDGSCGSPLSPN 210
SP SP SP+
Sbjct: 1741 PTSPSY----SPTSPS 1752
Score = 34.7 bits (79), Expect = 0.050
Identities = 61/215 (28%), Positives = 77/215 (35%), Gaps = 36/215 (16%)
Query: 17 TSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPSL 76
TSP PSSPG + PS P +PTS S
Sbjct: 1554 TSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTS-------------------PSYSP 1594
Query: 77 NSPPSSPTEMAYSYKKSARYGNLPVSPD---STHQHLHRSVSPVQASEANYPPSGHISLQ 133
SP SPT +YS S Y P SP ++ + S S S + P S S
Sbjct: 1595 TSPSYSPTSPSYSAT-SPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1651
Query: 134 SGYHSSNGPSIIIQSPPQS--NGNYSPPS-----SSSNIYSQQPPIHHLMTVMPPLQHSF 186
S +S PS SP S + +YSP S +S + P P S+
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711
Query: 187 KPS--HHSPRSLSPDDGSCG-SPLSPN-SQGSRGY 217
P+ +SP S S S SP SP+ S S Y
Sbjct: 1712 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746
Score = 34.3 bits (78), Expect = 0.063
Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 23/152 (15%)
Query: 74 PSLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQ 133
P SP SS Y P SP + + SP + P S S
Sbjct: 1537 PGYTSPFSSAMSPGYGLTSP---SYSPSSPGYSTSPAYMPSSP-----SYSPTSPSYSPT 1588
Query: 134 SGYHSSNGPSIIIQSPPQSN--GNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHH 191
S +S PS SP S +YSP +S YS P + P S+ P+
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSP---TSPSYSPTSPSY------SPTSPSYSPTSP 1639
Query: 192 SPRSLSPDDGSCGSPLSPNSQGSRGYRSLPYP 223
S SP SP SP+ + S P
Sbjct: 1640 SYSPTSPSY----SPTSPSYSPTSPSYSPTSP 1667
Score = 31.6 bits (71), Expect = 0.56
Identities = 28/142 (19%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 77 NSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGY 136
P + T S + + P + + S + G + S Y
Sbjct: 1477 QLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGR-----EGFGDYGLLGAASPY 1531
Query: 137 HSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSL 196
P + Y S S YS P + P S+ P+ S
Sbjct: 1532 KGVQSPGYTSPFSSAMSPGYGLTSPS---YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT 1588
Query: 197 SPDDGSCGSPLSPN-SQGSRGY 217
SP SP SP+ S S Y
Sbjct: 1589 SPSY----SPTSPSYSPTSPSY 1606
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 259 RPFQCNI--CTKSFTQLAHLQKHHLVHTGEK 287
RPF C C K FT+ LQ+H HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 37.2 bits (87), Expect = 2e-04
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 287 KPHECIY--CQKRFSSTSNLKTHMRLHSGQK 315
+P C + C KRF+ + L+ H R H+G+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.4 bits (77), Expect = 0.005
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 315 KPYHC--EVCPARFTQYVHLKLHKRLHTNER 343
+P+ C C RFT+ L+ HKR HT E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.5 bits (67), Expect = 0.097
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 233 YECNV--CYKTFGQLSNLKVHLRTHNGER 259
+ C C K F + L+ H RTH GE+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 37.4 bits (86), Expect = 2e-04
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
KP+ CI+CQ++F+ L+ H+R+H+G+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 32.0 bits (72), Expect = 0.013
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
+P+ C C + F LQ+H +HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.8 bits (61), Expect = 0.55
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
Y C C + F L+ H+R H GE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.6 bits (58), Expect = 1.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNER 343
KPY C C +F L+ H R+HT E+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 41.2 bits (96), Expect = 5e-04
Identities = 63/212 (29%), Positives = 80/212 (37%), Gaps = 43/212 (20%)
Query: 17 TSPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPSL 76
TSP SSPG SP+ P +PTS S
Sbjct: 1531 TSPGFGVSSPGF------SPTSPTYSPTSPAYSPTS-------------------PSYSP 1565
Query: 77 NSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGY 136
SP SPT +YS S Y P SP ++ S SP S + P S S S
Sbjct: 1566 TSPSYSPTSPSYSP-TSPSYS--PTSP--SYSPTSPSYSP--TSPSYSPTSPSYSPTSPS 1618
Query: 137 HSSNGPSIIIQSP--PQSNGNYSPP----SSSSNIYSQQPPIHHLMTV-MPPLQHSFKPS 189
+S PS SP ++ +YSP S +S YS P + + P S+ P+
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678
Query: 190 --HHSPRSLSPDDGSCG-SPLSPN-SQGSRGY 217
+SP S S S SP SP+ S S GY
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710
Score = 38.2 bits (88), Expect = 0.005
Identities = 32/141 (22%), Positives = 44/141 (31%), Gaps = 16/141 (11%)
Query: 74 PSLNSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQ 133
+ SP + +S P SP + S + S + P S S
Sbjct: 1528 EAPTSPGFGVSSPGFS----------PTSPTYSPT----SPAYSPTSPSYSPTSPSYSPT 1573
Query: 134 SGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTV-MPPLQHSFKPSHHS 192
S +S PS SP S S +S YS P + + P S+ P+ S
Sbjct: 1574 SPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1632
Query: 193 PRSLSPDDGSCGSPLSPNSQG 213
SP SP S
Sbjct: 1633 YSPTSPSYSPTSPSYSPTSPS 1653
Score = 36.2 bits (83), Expect = 0.016
Identities = 41/198 (20%), Positives = 63/198 (31%), Gaps = 20/198 (10%)
Query: 28 DNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPSLNSPPSSPTEMA 87
++L+ + T + + +V+ EL P ++S +
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG 1507
Query: 88 YSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQ 147
++ A YG + S S S S +S P+
Sbjct: 1508 FTAYGGADYGEATSPFGAY--------GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559
Query: 148 SPPQS--NGNYSPPSSS----SNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSLSPDDG 201
SP S + +YSP S S S YS P + +S +SP S S
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPT 1615
Query: 202 SCG-SPLSPN-SQGSRGY 217
S SP SP+ S S Y
Sbjct: 1616 SPSYSPTSPSYSPTSPSY 1633
Score = 34.3 bits (78), Expect = 0.064
Identities = 38/156 (24%), Positives = 53/156 (33%), Gaps = 13/156 (8%)
Query: 18 SPPPPPSSPGDNLMIVESPSPSDMVPQPVCKAPTSILENILMRSKAENVQKELRHIPSLN 77
SP P SP SPS S P +P+ + + + S
Sbjct: 1578 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--------YSPT 1629
Query: 78 SPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYH 137
SP SPT +YS + P ++ + S S S + P S S S +
Sbjct: 1630 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689
Query: 138 SSNGPSIIIQSPPQS--NGNYSPPSSSSNIYSQQPP 171
S P+ SP S + YSP S YS +
Sbjct: 1690 SPTSPNYSPTSPSYSPTSPGYSP---GSPAYSPKQD 1722
Score = 31.6 bits (71), Expect = 0.52
Identities = 24/147 (16%), Positives = 36/147 (24%), Gaps = 5/147 (3%)
Query: 79 PPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYHS 138
+ E + + SP+ S +N +G + G
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADY 1516
Query: 139 SNGPSIIIQSPPQSNGNYSP-PSSSSNIYSQQPPIHHLMTVMP-PLQHSFKPSHHSPRSL 196
S SP SS +S P + + P S+ P+ S
Sbjct: 1517 GEATS---PFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPT 1573
Query: 197 SPDDGSCGSPLSPNSQGSRGYRSLPYP 223
SP SP S P
Sbjct: 1574 SPSYSPTSPSYSPTSPSYSPTSPSYSP 1600
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.9 bits (82), Expect = 7e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 255 HNGERPFQCNICTKSFTQLAHLQKHHLVHT 284
+G+RPF C IC +FT A+ +H VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.4 bits (73), Expect = 0.013
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
+G++P C C F++ +N H+++H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 31.6 bits (71), Expect = 0.021
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLHTN 341
SG++P+ C +C + FT + H ++HT+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 0.003
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 246 SNLKVHLRTHNGERPFQCNICTKSFTQLA----HLQKHHLVHTGEKPHECIYCQKRFSST 301
+ + + E ++C CT L H+ H + C+ C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 302 SNLKTH-MRLHSGQKPYHCEV 321
L H ++ H G++ + +
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
Score = 35.5 bits (81), Expect = 0.004
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRL-HSG---QKPYHCEVCPARFTQYV 330
H + E +EC YC + + H+ H Y C C +Y
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 331 HLKLH-KRLHTNERPYVCK 348
L H + H E +
Sbjct: 65 ALSEHNLKYHPGEENFKLT 83
Score = 32.1 bits (72), Expect = 0.076
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 302 SNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLH-KRLHTNER---PYVCKGCNKRYISL 357
+ + + + Y C+ C + H H N YVC CN
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 358 SGL 360
L
Sbjct: 64 DAL 66
Score = 25.9 bits (56), Expect = 8.8
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 225 KKKDGKMHYECNVCYKTFGQLSNLKVHLRTH----NGERPFQCNICTKSFTQLAHLQKHH 280
+ K + YEC C L+ H+ + + C C + L +H+
Sbjct: 11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHN 70
Query: 281 L-VHTGEKP 288
L H GE+
Sbjct: 71 LKYHPGEEN 79
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 36.2 bits (83), Expect = 0.015
Identities = 24/144 (16%), Positives = 36/144 (25%), Gaps = 12/144 (8%)
Query: 105 STHQHLHRSVSPVQASEANY-----PPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPP 159
+ H H H S P H S GP I SP Q + S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPG--IGSPGQLHSPISTL 59
Query: 160 SSSSNIYSQQPPIHHLMTVMPPLQHSFKPS-----HHSPRSLSPDDGSCGSPLSPNSQGS 214
SS N + + P+ S + S + P +
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 215 RGYRSLPYPLKKKDGKMHYECNVC 238
+ +P + C +C
Sbjct: 120 GVLKVPAHPSGNMASFTKHICAIC 143
Score = 30.8 bits (69), Expect = 0.79
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 4/132 (3%)
Query: 77 NSPPSSPTEMAYSYKKSARYGNLPVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGY 136
+ + S S + H + + P S S
Sbjct: 7 HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL----SSP 62
Query: 137 HSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSL 196
+ GP + S P + S P++ + +S P KP L
Sbjct: 63 INGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122
Query: 197 SPDDGSCGSPLS 208
G+ S
Sbjct: 123 KVPAHPSGNMAS 134
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 31.3 bits (70), Expect = 0.025
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
+P QC +C K+FTQ + L H HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 31.3 bits (70), Expect = 0.026
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
KP +C+ C K F+ S+L H+R H+G+K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.2 bits (62), Expect = 0.39
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 235 CNVCYKTFGQLSNLKVHLRTHNGER 259
C +C K F Q S+L H+R H GE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHTNER 343
KP C +C FTQ L H R HT E+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 32.3 bits (73), Expect = 0.034
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 245 LSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNL 304
S H T R C C + L K H + G + C C + +L
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSILK--LKEHEDYCGARTELCGNCGRNVLV-KDL 58
Query: 305 KTHMRLHSGQK 315
KTH + +
Sbjct: 59 KTHPEVCGREG 69
Score = 29.2 bits (65), Expect = 0.36
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 273 LAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHL 332
+ H + C +C S LK H + G + C C R L
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHE-DYCGARTELCGNC-GRNVLVKDL 58
Query: 333 KLHKRLHTNE 342
K H + E
Sbjct: 59 KTHPEVCGRE 68
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.0 bits (70), Expect = 0.046
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 222 YPLKKKDGKMHYECNV--CYKTFGQLSNLKVHLRTHNGER 259
Y + D +EC C KTF + N++ H++TH +R
Sbjct: 10 YVKEMPDKT--FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 30.2 bits (68), Expect = 0.082
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHSGQK 315
+K EC++ C K F N+++H++ H +
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 24.8 bits (54), Expect = 9.1
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 315 KPYHCEV--CPARFTQYVHLKLHKRLHTNER 343
K + C C F + +++ H + H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.058
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
+ EK H+C C + F +L H LH GQK
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 30.2 bits (67), Expect = 0.085
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 258 ERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
E+ QC C + F Q L +H ++H G+K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.5 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
S +K + C C F QYV L H+ LH ++
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 34.2 bits (78), Expect = 0.059
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 102 SPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSS 161
+ S Q++H + + + A PP+ + S+ + G +
Sbjct: 19 TISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSP---ISMTMPPHGSLQGYQTYGHF 75
Query: 162 SSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSLSPDD 200
S + P + + + +S+ S+ + S
Sbjct: 76 PSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPH 114
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.7 bits (68), Expect = 0.066
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHSG 313
+GEKP+ C C RF + H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.7 bits (63), Expect = 0.33
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 255 HNGERPFQCNICTKSFTQLAHLQKHHLVHTG 285
+GE+P+ C +C F + + H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.6 bits (60), Expect = 0.87
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLH 339
SG+KPY C VC RF + + H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.3 bits (75), Expect = 0.095
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 296 KRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
KR S S H L G+K E L+ L +
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 31.7 bits (71), Expect = 0.25
Identities = 7/49 (14%), Positives = 17/49 (34%)
Query: 263 CNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLH 311
K ++ H + GEK + ++ + +L+ + L
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 29.8 bits (66), Expect = 1.3
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 240 KTFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKH 279
K +S +H GE+ Q + L+
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.7 bits (67), Expect = 0.100
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLH 311
+ + C +C++ F S L HM +H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.10
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 254 THNGERPFQCNICTKSFTQLAHLQKHHLVHT 284
+ E+ F+CN C K+F+ +L +H +HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 29.4 bits (65), Expect = 0.20
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 283 HTGEKPHECIYCQKRFSSTSNLKTHMRLHS 312
EK +C C+K FS + L H R+H+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.9 bits (56), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 311 HSGQKPYHCEVCPARFTQYVHLKLHKRLHT 340
+K + C C F+ +L H+R+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.2 bits (54), Expect = 5.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 229 GKMHYECNVCYKTFGQLSNLKVHLRTH 255
+ ++CN C KTF L H R H
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIH 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.4 bits (65), Expect = 0.13
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSG 313
+P+ C C KRFS ++TH R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.6 bits (63), Expect = 0.22
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTG 285
RP+ C++C K F+ ++ H+ VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 315 KPYHCEVCPARFTQYVHLKLHKRLHT 340
+PY C VC RF+ ++ H R+HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.1 bits (65), Expect = 0.14
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEK 287
F C C K F + HL H L+H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 27.2 bits (60), Expect = 0.78
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNER 343
+ C CP RF + HL LH LH N++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.8 bits (59), Expect = 0.95
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 290 ECIYCQKRFSSTSNLKTHMRLHSGQK 315
C C KRF + +L H+ LH +K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.5 bits (53), Expect = 6.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
+ C C K F + +L +H+ H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.15
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 291 CIYCQKRFSSTSNLKTHMRLHSGQK 315
C YC K F +L+ H+R+H+ +K
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 0.39
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
+ C C K F +L+ HLR H E+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 1.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEK 287
F C C K F LQ H +HT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 2.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNER 343
S K + CE C F L+ H R+HTNE+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.0 bits (69), Expect = 0.16
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
C C + K H+ + ++ C +C K+ S + +K H+ + P
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 29.1 bits (64), Expect = 0.73
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 230 KMHYECNVCYK-TFGQLSNLKVHLRTHNGERPFQCNICTKSFTQLAHLQKHHLVHTGEKP 288
K C C + LK H+ + F C+ C K LA ++ H + + P
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 25.6 bits (55), Expect = 10.0
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 290 ECIYCQK-RFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVHLKLHKRLHTNERP 344
C CQ + LK HM Q+ + C C + +K H + N P
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.17
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 284 TGEKPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
+ KP++C C + +NL H+R H+G+K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.9 bits (56), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGER 259
Y+C C +NL VHLR H GE+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 259 RPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
+P++C C+ + A+L H HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.19
Identities = 50/406 (12%), Positives = 98/406 (24%), Gaps = 132/406 (32%)
Query: 50 PTSILENILMRSKAENVQKELRHIPSLNSP---------PSSPTEMAYSYKKSARYGNL- 99
PT+ A +Q++ L P P++P E+ ++ L
Sbjct: 23 PTASF------FIASQLQEQFNK--ILPEPTEGFAADDEPTTPAELV------GKF--LG 66
Query: 100 ----PVSPDSTHQH--------------------LHRSVSPVQASEANYPPSGHISLQSG 135
V P Q +H + + +++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 136 YHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQ---------------------QPPIHH 174
+ S + ++ + + +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 175 LMTVMPPLQHSFKPSHHSPRSLSPDDGSCGSPL-----SPNSQGSRGY-RSLPY--PLKK 226
L+ + + G + +P++ + Y S+P PL
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQ----GLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 227 KDGKMHYE--CNVCYKTFGQLSNLKVHLRTHNGERPFQCNICT----------KSFTQLA 274
HY + T G+L + H+ + T +SF
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ------GLVTAVAIAETDSWESFFVSV 296
Query: 275 HLQKHHLVHTGEKPHECIYCQKRFSSTS--------------NLKTHMRLH-SGQKPYHC 319
L G + C + + +TS + + M L S
Sbjct: 297 RKAITVLFFIG------VRCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQV 349
Query: 320 EVCPARFTQYVHLKLHKRLH---TN-ERPYVCKGCNKRYISLSGLR 361
+ + HL K++ N + V G SL GL
Sbjct: 350 QDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSG---PPQSLYGLN 390
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.7 bits (64), Expect = 0.22
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKP 288
F C C K F + HL KH +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 26.8 bits (59), Expect = 0.98
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 290 ECIYCQKRFSSTSNLKTHMRLHSGQKP 316
C C KRF + +L H+ LH
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 25.6 bits (56), Expect = 2.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 317 YHCEVCPARFTQYVHLKLHKRLHTNERP 344
+ C CP RF + HL H LH
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 24.9 bits (54), Expect = 5.7
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHNGERP 260
+ C C K F + +L H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.5 bits (65), Expect = 0.46
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 230 KMHYECNVCYKTFGQ-LSNLKVHLRT-HNGERPFQCNICTKSFTQLAHLQKHHLVHTGEK 287
+ C C + L LK H+ + +C C K F A L H + K
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 288 P 288
P
Sbjct: 82 P 82
Score = 27.6 bits (60), Expect = 2.4
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 261 FQCNICTKSFTQLAHLQKHHLV--HTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKP 316
C C + K H+ + +C +C+K+F S + L H KP
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.1 bits (56), Expect = 7.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 312 SGQKPYHCEVCPARFTQYVH-LKLH-KRLHTNERPYVCKGCNKRYISLSGLR 361
+ C C + + LK H + + C+ C K++ S +GL
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 29.1 bits (65), Expect = 0.52
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVHTGEKPHECIYCQKRFSSTS 302
F CN C +S + ++KH + CI C K F
Sbjct: 11 FTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWGDD 51
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.1 bits (60), Expect = 0.71
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 259 RPFQCNICTKSFTQ----LAHLQKHH 280
+ + C +C ++FT+ + H QK H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 24.0 bits (52), Expect = 9.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMR-LHSG 313
K + C C + F+ L H + +HSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.74
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 286 EKPHECIYCQKRFSSTSNLKTHMRLHSGQ 314
K H C C K+F S LK+H LH+
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 26.7 bits (58), Expect = 1.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 256 NGERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
+ + C++C K F L+ H L+HT +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.9 bits (56), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 312 SGQKPYHCEVCPARFTQYVHLKLHKRLHTNE 342
S K + C++C +F LK HK LHT +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.1 bits (59), Expect = 0.83
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
K ++C YC+ R + +SNLKTH++ ++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 29.3 bits (65), Expect = 0.84
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 289 HECIYCQKRFSSTSNLKTHMR 309
H C+ C + F ++NLKTH R
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
Score = 27.0 bits (59), Expect = 5.7
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 208 SPNSQGSRGYRSLPYPLKKKDGKMHYECNVCYKTFGQLSNLKVHLRT 254
S + + + G +H C C + F +NLK H R+
Sbjct: 27 PQGSARPQPDPNAEFDPDLPGGGLHR-CLACARYFIDSTNLKTHFRS 72
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.0 bits (59), Expect = 1.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 256 NGERPFQCNI--CTKSFTQLAHLQKHHLVHT 284
+ ++PF C C + FT HL H H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 24.6 bits (53), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 314 QKPYHCEV--CPARFTQYVHLKLHKRLHT 340
KP+ C C RFT HL +HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 257 GERPFQCNICTKSFTQLAHLQKHHLVHTGE 286
+ +C C K F + L +H +H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 29.6 bits (66), Expect = 1.5
Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 31 MIVESPSPSDMVPQPVCKAPTSILEN----ILMRSKAENVQKELRHIPSLNSPPSSPTEM 86
+IV S + D + V + ++L+N +L+ +++ + + + +L +E
Sbjct: 300 LIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGEKDL-EAITTLMNL-------SEA 351
Query: 87 AYSYKKSARYGNLPVSPDSTHQHLHRSVSP 116
+ +A+ G + H+ +P
Sbjct: 352 EHDLLVNAKRGEGLFVAGTQRIHIKIEAAP 381
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.4 bits (57), Expect = 1.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLHSGQK 315
KP +C C+ S SNLK HM HS +K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.8 bits (56), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 287 KPHECIYCQKRFSSTSNLKTHMRLH 311
KP+ C C KRF +S L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.7 bits (53), Expect = 6.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 315 KPYHCEVCPARFTQYVHLKLHKRLH 339
KPY CE C RF Q L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger
domain, metal binding protein; NMR {Rattus norvegicus}
PDB: 2cjs_C
Length = 62
Score = 26.3 bits (57), Expect = 3.1
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 289 HECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVC 322
H C YCQ +F + + +R S + + C +C
Sbjct: 26 HNCSYCQTKFCARCGGRVSLR--SNKVMWVCNLC 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 3.3
Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 32/107 (29%)
Query: 1 MSKLYHKFD--QEKEVHSTSPPPPPSSPGDNLM--------IVES-PSPSDMVPQPVCKA 49
++ F ++K H ++ S + L I ++ P +V
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV------- 545
Query: 50 PTSILENI------LMRSKAEN-VQKELRHIPSLNSPPSSPTEMAYS 89
+IL+ + L+ SK + ++ +L + + E A+
Sbjct: 546 -NAILDFLPKIEENLICSKYTDLLRI------ALMAEDEAIFEEAHK 585
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 28.4 bits (63), Expect = 4.1
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 21/100 (21%)
Query: 197 SPDDGSCGSPLSPNSQGSRG-YRSLPYPLKKKDGKMHYECNVCYKTFGQLSNLKVH---- 251
+PD G PL+ SRG S P K+ + + G L N K H
Sbjct: 655 TPDGRKSGQPLADGVSPSRGCDVSGPTAACNSVSKLDHF----IASNGTLFNQKFHPSAL 710
Query: 252 ------------LRTHNGERPFQCNICTKSFTQLAHLQKH 279
+R++ ++ F L QK+
Sbjct: 711 KGDNGLMNLSSLIRSYFDQKGFHVQFNVIDKKILLAAQKN 750
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.1 bits (54), Expect = 4.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 261 FQCNICTKSFTQLAHLQKHHLVH 283
++C +C +SF + + L +H VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 24.7 bits (53), Expect = 5.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 233 YECNVCYKTFGQLSNLKVHLRTHN 256
Y+C +C ++F + S L H R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.1 bits (54), Expect = 4.5
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 261 FQCNICTKSFTQLAHLQKH 279
F C C K F + L KH
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 28.4 bits (63), Expect = 4.8
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 100 PVSPDSTHQHLHRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPP 159
P + + + + + +Q +A YPP G+ GY P Y PP
Sbjct: 364 PSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPP 423
Query: 160 SSSSNIYSQQP 170
+ P
Sbjct: 424 PQGAPPQGAPP 434
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 26.0 bits (57), Expect = 4.9
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 224 LKKKDGKMHYECNVCYKTFGQLSNLKVHLRTHNGERPFQCNIC 266
+ + ++C VC TF L ++ G F+C C
Sbjct: 6 ERDSTNRASFKCPVCSSTFTDLEANQL-FDPMTGT--FRCTFC 45
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.3 bits (62), Expect = 4.9
Identities = 12/106 (11%), Positives = 21/106 (19%), Gaps = 1/106 (0%)
Query: 109 HLHRSVSPVQASEANYPPSGHISLQSGYHSSNGPSIIIQSPPQSNGNYSPPSSSSNIYSQ 168
H + V P + + + + + S
Sbjct: 3 HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 169 QPPIHHLMTVMPPLQHSFKPSHHSPRSLSPDDGSCGSPLSPNSQGS 214
P L + S H L + P P G+
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY-MQPQVPVQMGT 107
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.0 bits (54), Expect = 5.2
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 258 ERPFQCNI--CTKSFTQLAHLQKHHLVHT 284
+RP+ C+ C K+F + L +H H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.0 bits (54), Expect = 5.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 286 EKPHECIY--CQKRFSSTSNLKTHMRLHS 312
++P+ C + C K F +L H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.9 bits (61), Expect = 5.8
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 282 VHTGEKPHECIYCQKRFSSTSNLKTHMRLHSGQKPYHCEVCPARFTQYVH 331
+ + K C +C + F ++S ++H+ +K +H
Sbjct: 286 LRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLH 335
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 26.9 bits (59), Expect = 6.2
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 285 GEKPHECIYCQKRFSSTSNLKTHMRLH 311
G + C++C + F+S +H +L
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLE 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.6
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 295 QKRFSSTSNLKTHMRLHSGQKPYHCEVCPA 324
+K+ LK +L + K Y + PA
Sbjct: 18 EKQ-----ALK---KLQASLKLYADDSAPA 39
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 27.6 bits (60), Expect = 7.7
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 147 QSPPQSNGNYSPPSSSSNIYSQQPPIHHLMTVMPPLQHSFKPSHHSPRSLSPDDG 201
Q+ Q + Y+ P+ +++ P +PP Q P S G
Sbjct: 2 QAKAQLSNGYNNPNVNASNMYGPPQ----NMSLPPPQTQTIQGTDQPYQYSQCTG 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.403
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,399,718
Number of extensions: 302378
Number of successful extensions: 1782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1456
Number of HSP's successfully gapped: 814
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)