BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8182
(827 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRB|A Chain A, Structure Of Aldose Reductase From Giardia Lamblia At
1.75a Resolution
pdb|3KRB|B Chain B, Structure Of Aldose Reductase From Giardia Lamblia At
1.75a Resolution
Length = 334
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 356 REDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQ-----RLVLDKAIPVAFTLKL 410
RE + + +YL++ L +H FVR V LF R +L+K +P+A T +
Sbjct: 104 REQCKKTMSDLQVDYLDLFL--VHWPLAFVRNDVGDLFPKDAEGRAMLEK-VPLADTWRA 160
Query: 411 LERAIGRLMDKSSNVVKYTVQLLKTMI 437
+E+ + + K V YTV LL ++
Sbjct: 161 MEQLVEEGLVKHIGVSNYTVPLLADLL 187
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 266 AVVMFIRNHGCKSLVREIVRE 286
A+VMF ++ GCK L+++++RE
Sbjct: 758 AIVMFFKDEGCKPLMQQLLRE 778
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 691 AVVMFIRNHGCKSLVREIVRE 711
A+VMF ++ GCK L+++++RE
Sbjct: 758 AIVMFFKDEGCKPLMQQLLRE 778
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 44 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 101
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 44 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 101
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 40 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 97
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 40 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 97
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 42 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 99
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 42 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 99
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 343 LTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI 402
+T + EL + KRE S + QR L LLD MHDV + + Q F LDK++
Sbjct: 175 MTYIKELGKAIVKREGNSSQ-NWQRFYQLTKLLDSMHDVVENLLSYCFQTF----LDKSM 229
Query: 403 PVAFTLKLLERAIGRLMDKSSN 424
+ F ++L I + K SN
Sbjct: 230 SIEFP-EMLAEIITNQIPKYSN 250
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 343 LTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI 402
+T + EL + KRE S + QR L LLD MHDV + + Q F LDK++
Sbjct: 175 MTYIKELGKAIVKREGNSSQ-NWQRFYQLTKLLDSMHDVVENLLSYCFQTF----LDKSM 229
Query: 403 PVAFTLKLLERAIGRLMDKSSN 424
+ F ++L I + K SN
Sbjct: 230 SIEFP-EMLAEIITNQIPKYSN 250
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 343 LTIVTELLIN-----VYKREDLSDEAKEQRDEYLNVLLDHMHDVHTF---VRTKVLQLFQ 394
+ I T L+IN +Y+R +DE K +EYL +L +H V + K LQL Q
Sbjct: 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYL-ILASTLHGVFAIASQLTPKALQLTQ 59
Query: 395 RLVLDKAIP 403
+ ++ IP
Sbjct: 60 QTNIENTIP 68
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 43 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 100
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 43 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 100
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 30 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 87
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 30 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 87
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 40 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 97
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 40 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 97
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 29 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 86
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 29 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 86
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 39 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 96
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 39 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 96
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 36 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 93
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 36 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 93
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 35 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 92
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 35 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 92
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 78 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 130
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 503 HNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEK-----YLNVVKMTLWVFTEFIIN 555
+N +TK+ ++SLK+ S D FL+ +L ++LQ + Y V + +++ TE++ N
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,252,297
Number of Sequences: 62578
Number of extensions: 861257
Number of successful extensions: 2277
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2253
Number of HSP's gapped (non-prelim): 43
length of query: 827
length of database: 14,973,337
effective HSP length: 107
effective length of query: 720
effective length of database: 8,277,491
effective search space: 5959793520
effective search space used: 5959793520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)