BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8182
(827 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 OS=Mus musculus GN=Ncapd2 PE=1 SV=2
Length = 1392
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 259/448 (57%), Gaps = 22/448 (4%)
Query: 6 EFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSM 65
EF +P S +ELL+ QY V+ L ++ + +++ A GP+ ILE+FDT+YS+
Sbjct: 7 EFHLPLSPEELLKSGGVNQYVVREVLPVKHLSSQLRAFQSAFRAQGPLAILEHFDTVYSI 66
Query: 66 LTHFKSIEYKILHNVY---TKLLLRSLKEFSSILDNF-LSGDSLDEELQEKYLNVVKMTL 121
L HF+SIE + + K++ R +E SSILD+ LSG + +LN +KM
Sbjct: 67 LHHFRSIEPGLKEDTLEFLKKVVSRHSQELSSILDDAALSGSD-----RSAHLNALKMNC 121
Query: 122 WVFTEFIINFETRL-QKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQ 180
+ + +FE Q + I K ++ + +A + +DW+ L + Q
Sbjct: 122 YALIRLLESFENMTSQTSLIDLDIGGKGKRARAKATLG------FDWEEERQPVLQLLTQ 175
Query: 181 ILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYN 240
+L+ I LW+ +EEEFV++V CCY+++E+P I+ K++ + I ++G + RYN
Sbjct: 176 LLQLDIRHLWNHSAIEEEFVSLVTGCCYRLLENPTISHQKNRSTKEAIAHLLGVALVRYN 235
Query: 241 HGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREIS---AMEDGNENA 297
H +S TVKI+Q+L++ EHL L AV ++ ++G KS+V EIVREI E + A
Sbjct: 236 HMLSATVKIIQMLQHFEHLPPVLVTAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDTA 295
Query: 298 GQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKRE 357
G +K AAFL E+A ++ M LL +L+ E+Y+MRN L + E+++ V +
Sbjct: 296 G---AKGFAAFLTELAERIPAVLMANMCILLDHLDGENYMMRNAVLAAIAEMVLQVLNGD 352
Query: 358 DLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGR 417
L + A+E RD++L++L H HDV++FVR++VLQLF R+V KA+P+ ++ A+GR
Sbjct: 353 QLEESARETRDQFLDILQAHGHDVNSFVRSRVLQLFARIVQQKALPLTRFQAVVALAVGR 412
Query: 418 LMDKSSNVVKYTVQLLKTMIESNPFAAK 445
L DKS V K +QLL + + +NPF+ K
Sbjct: 413 LADKSVLVCKNAIQLLASFLANNPFSCK 440
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 214/379 (56%), Gaps = 22/379 (5%)
Query: 444 AKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILH 503
+ QY V+ L ++ + +++ A GP+ ILE+FDT+YS+L HF+SIE +
Sbjct: 20 SGGVNQYVVREVLPVKHLSSQLRAFQSAFRAQGPLAILEHFDTVYSILHHFRSIEPGLKE 79
Query: 504 NVY---TKLLLRSLKEFSSILDNF-LSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETR 559
+ K++ R +E SSILD+ LSG + +LN +KM + + +FE
Sbjct: 80 DTLEFLKKVVSRHSQELSSILDDAALSGSD-----RSAHLNALKMNCYALIRLLESFENM 134
Query: 560 L-QKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPP 618
Q + I K ++ + +A + +DW+ L + Q+L+ I LW+
Sbjct: 135 TSQTSLIDLDIGGKGKRARAKATLG------FDWEEERQPVLQLLTQLLQLDIRHLWNHS 188
Query: 619 VVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLL 678
+EEEFV++V CCY+++E+P I+ K++ + I ++G + RYNH +S TVKI+Q+L
Sbjct: 189 AIEEEFVSLVTGCCYRLLENPTISHQKNRSTKEAIAHLLGVALVRYNHMLSATVKIIQML 248
Query: 679 KNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREIS---AMEDGNENAGQDSSKMIAAFLN 735
++ EHL L AV ++ ++G KS+V EIVREI E + AG +K AAFL
Sbjct: 249 QHFEHLPPVLVTAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDTAG---AKGFAAFLT 305
Query: 736 EVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEY 795
E+A ++ M LL +L+ E+Y+MRN L + E+++ V + L + A+E RD++
Sbjct: 306 ELAERIPAVLMANMCILLDHLDGENYMMRNAVLAAIAEMVLQVLNGDQLEESARETRDQF 365
Query: 796 LNVLLDHMHDVHTFVRTKV 814
L++L H HDV++FVR++V
Sbjct: 366 LDILQAHGHDVNSFVRSRV 384
>sp|Q15021|CND1_HUMAN Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3
Length = 1401
Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/445 (35%), Positives = 257/445 (57%), Gaps = 16/445 (3%)
Query: 6 EFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSM 65
EF +P S +ELL+ QY VQ L+++ +++ A GP+ +L++FDT+YS+
Sbjct: 7 EFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHFDTIYSI 66
Query: 66 LTHFKSIEYKILHNVYT---KLLLRSLKEFSSILDNF-LSGDSLDEELQEKYLNVVKMTL 121
L HF+SI+ + + K++ R +E +ILD+ LSG + +LN +KM
Sbjct: 67 LHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSD-----RNAHLNALKMNC 121
Query: 122 WVFTEFIINFETRL-QKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQ 180
+ + +FET Q + + + K +K + +AA H +DW+ L + Q
Sbjct: 122 YALIRLLESFETMASQTNLVDLDLGGKGKKARTKAA--HG----FDWEEERQPILQLLTQ 175
Query: 181 ILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYN 240
+L+ I LW+ ++EEEFV++V CCY+++E+P I K++ R I ++G + RYN
Sbjct: 176 LLQLDIRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYN 235
Query: 241 HGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQD 300
H +S TVKI+Q+L++ EHL L AV ++ ++G KS+V EIVREI +
Sbjct: 236 HMLSATVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPS 295
Query: 301 SSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLS 360
+K AAFL E+A ++ +M LL +L+ E+Y+MRN L + E+++ V + L
Sbjct: 296 GTKGFAAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLE 355
Query: 361 DEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMD 420
A++ RD++L+ L H HDV++FVR++VLQLF R+V KA+P+ ++ A+GRL D
Sbjct: 356 AAARDTRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLAD 415
Query: 421 KSSNVVKYTVQLLKTMIESNPFAAK 445
KS V K +QLL + + +NPF+ K
Sbjct: 416 KSVLVCKNAIQLLASFLANNPFSCK 440
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 212/376 (56%), Gaps = 16/376 (4%)
Query: 444 AKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILH 503
+ QY VQ L+++ +++ A GP+ +L++FDT+YS+L HF+SI+ +
Sbjct: 20 SGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHFDTIYSILHHFRSIDPGLKE 79
Query: 504 NVYT---KLLLRSLKEFSSILDNF-LSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETR 559
+ K++ R +E +ILD+ LSG + +LN +KM + + +FET
Sbjct: 80 DTLQFLIKVVSRHSQELPAILDDTTLSGSD-----RNAHLNALKMNCYALIRLLESFETM 134
Query: 560 L-QKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPP 618
Q + + + K +K + +AA H +DW+ L + Q+L+ I LW+
Sbjct: 135 ASQTNLVDLDLGGKGKKARTKAA--HG----FDWEEERQPILQLLTQLLQLDIRHLWNHS 188
Query: 619 VVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLL 678
++EEEFV++V CCY+++E+P I K++ R I ++G + RYNH +S TVKI+Q+L
Sbjct: 189 IIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSATVKIIQML 248
Query: 679 KNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVA 738
++ EHL L AV ++ ++G KS+V EIVREI + +K AAFL E+A
Sbjct: 249 QHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGFAAFLTELA 308
Query: 739 AHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNV 798
++ +M LL +L+ E+Y+MRN L + E+++ V + L A++ RD++L+
Sbjct: 309 ERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARDTRDQFLDT 368
Query: 799 LLDHMHDVHTFVRTKV 814
L H HDV++FVR++V
Sbjct: 369 LQAHGHDVNSFVRSRV 384
>sp|Q9YHY6|CND1_XENLA Condensin complex subunit 1 OS=Xenopus laevis GN=ncapd2 PE=1 SV=1
Length = 1364
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 278/490 (56%), Gaps = 20/490 (4%)
Query: 7 FVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSML 66
F IP + +LL+ QY VQ L + + + + + P+ IL++FDTLYS+L
Sbjct: 5 FHIPLAFRDLLKSGGIGQYVVQEVLPVRHVDAQFAAFQTSFRTEAPLCILQHFDTLYSIL 64
Query: 67 THFKSIEYKILHNV---YTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWV 123
HF+S++ I +V K+ R E +IL++ +L + +LN +KM ++
Sbjct: 65 HHFRSLDIAIKEDVLEVMVKVASRHANELPAILEDL----NLSVPQRAAHLNALKMNCFI 120
Query: 124 FTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILK 183
T+ I FE + +K + + K + A E + W+ + L ++ +L+
Sbjct: 121 LTQLIEAFEA----ETYKASLGSVEPSGKGKKAKSKPEG--FSWESERESILQALTHLLQ 174
Query: 184 SKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGI 243
I +LW VVEEEFV+M+ +CCYK++E+P I K+K R + ++G +KRYNH +
Sbjct: 175 LDIRRLWSMSVVEEEFVSMMTSCCYKMMENPNIVMAKNKSTREALGHLLGVTVKRYNHML 234
Query: 244 SCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSS- 302
S +VK++QLL++ EHL S L V ++ +G K ++ EI+REI + +++ ++SS
Sbjct: 235 SASVKVIQLLQHFEHLASVLVHTVSLWATEYGMKPVIGEIMREIG--QKCSQDLSRESSG 292
Query: 303 -KMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSD 361
K A FL E+A ++P++ LL L+ E+Y+MRN LT++ E+++ V + L +
Sbjct: 293 FKAFATFLTELAERIPAIMMPSISVLLDYLDGENYMMRNSVLTVMGEMVVRVLSGDQLEE 352
Query: 362 EAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDK 421
K RD++L+ L +H+HDV+T+VR+ V+Q++ R+V +KA+P++ ++ +GRL DK
Sbjct: 353 AEKSSRDQFLDTLQEHLHDVNTYVRSCVIQIYNRIVQEKALPLSRFQSVVTLVVGRLFDK 412
Query: 422 SSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFIL 481
S NV K +QLL + + +NPF K ++ V ++ LE+ +++K+ E P+ ++
Sbjct: 413 SVNVCKNAIQLLASFLANNPFTCKLSS---VDLKVPLEKETKKLKEMREKYQGPKPVVVI 469
Query: 482 ENFDTLYSML 491
+ +ML
Sbjct: 470 SPEEEWEAML 479
Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 212/376 (56%), Gaps = 17/376 (4%)
Query: 444 AKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILH 503
+ QY VQ L + + + + + P+ IL++FDTLYS+L HF+S++ I
Sbjct: 17 SGGIGQYVVQEVLPVRHVDAQFAAFQTSFRTEAPLCILQHFDTLYSILHHFRSLDIAIKE 76
Query: 504 NV---YTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRL 560
+V K+ R E +IL++ +L + +LN +KM ++ T+ I FE
Sbjct: 77 DVLEVMVKVASRHANELPAILEDL----NLSVPQRAAHLNALKMNCFILTQLIEAFEA-- 130
Query: 561 QKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVV 620
+ +K + + K + A E + W+ + L ++ +L+ I +LW VV
Sbjct: 131 --ETYKASLGSVEPSGKGKKAKSKPEG--FSWESERESILQALTHLLQLDIRRLWSMSVV 186
Query: 621 EEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKN 680
EEEFV+M+ +CCYK++E+P I K+K R + ++G +KRYNH +S +VK++QLL++
Sbjct: 187 EEEFVSMMTSCCYKMMENPNIVMAKNKSTREALGHLLGVTVKRYNHMLSASVKVIQLLQH 246
Query: 681 CEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSS--KMIAAFLNEVA 738
EHL S L V ++ +G K ++ EI+REI + +++ ++SS K A FL E+A
Sbjct: 247 FEHLASVLVHTVSLWATEYGMKPVIGEIMREIG--QKCSQDLSRESSGFKAFATFLTELA 304
Query: 739 AHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNV 798
++P++ LL L+ E+Y+MRN LT++ E+++ V + L + K RD++L+
Sbjct: 305 ERIPAIMMPSISVLLDYLDGENYMMRNSVLTVMGEMVVRVLSGDQLEEAEKSSRDQFLDT 364
Query: 799 LLDHMHDVHTFVRTKV 814
L +H+HDV+T+VR+ V
Sbjct: 365 LQEHLHDVNTYVRSCV 380
>sp|O94679|CND1_SCHPO Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cnd1 PE=1 SV=1
Length = 1158
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 185/394 (46%), Gaps = 28/394 (7%)
Query: 59 FDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVK 118
+ L+++ +HF + + + VY LL ++ S+IL++ +S ++ D + + L
Sbjct: 57 LEKLFAICSHFADLSSSVRNKVY-DLLTSNISSESAILEDMISANATDFTVPQTNLETTG 115
Query: 119 MTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDF--HLSNGLN 176
+ + L VI + VK R K N +W+ H++ L+
Sbjct: 116 IAFQLTV-------NSLSSSNQLSVIRSSTNTVKGR---KKNPTTNSNWNGISHVNALLD 165
Query: 177 SIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLI 236
+I + + K++++W + F+++ Y ++E ++K+ R +F I+G +
Sbjct: 166 AIITLFQKKLSRVWTTSSERDMFLSLFLKPIYTLMESEI--NIKNASFRSRLFNIIGLAV 223
Query: 237 KRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAME-DGNE 295
+ +NH + I+Q L+ EHL A V + +L I+R + ++E + N+
Sbjct: 224 QFHNHTTAAETNIIQNLQYFEHLSEYAADLVHIVTVQFNSVTLAEGIIRTLCSLEFNDND 283
Query: 296 NAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYK 355
G K +A FL +++ + + +L+ L+ ESY +R + ++ ++I+
Sbjct: 284 VKG---PKQVALFLVRLSSLIPNLCLKQLTQLVKLLDSESYTLRCAIIEVLANVVIDQIH 340
Query: 356 RE---DLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLK--- 409
E ++S+ +++L + + D+ + RTKVL +F ++ +P+ + K
Sbjct: 341 DEAQNEMSESVPATVQSLMDLLSERLLDISPYCRTKVLHVFIKIF---DLPIKYPRKRQE 397
Query: 410 LLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA 443
+ E I L D+SS+V + ++L ++ ++PF+
Sbjct: 398 IAELVIRCLQDRSSHVRRNAIKLFSKLLTTHPFS 431
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 154/337 (45%), Gaps = 22/337 (6%)
Query: 484 FDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVK 543
+ L+++ +HF + + + VY LL ++ S+IL++ +S ++ D + + L
Sbjct: 57 LEKLFAICSHFADLSSSVRNKVY-DLLTSNISSESAILEDMISANATDFTVPQTNLETTG 115
Query: 544 MTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDF--HLSNGLN 601
+ + L VI + VK R K N +W+ H++ L+
Sbjct: 116 IAFQLTV-------NSLSSSNQLSVIRSSTNTVKGR---KKNPTTNSNWNGISHVNALLD 165
Query: 602 SIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLI 661
+I + + K++++W + F+++ Y ++E ++K+ R +F I+G +
Sbjct: 166 AIITLFQKKLSRVWTTSSERDMFLSLFLKPIYTLMESEI--NIKNASFRSRLFNIIGLAV 223
Query: 662 KRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAME-DGNE 720
+ +NH + I+Q L+ EHL A V + +L I+R + ++E + N+
Sbjct: 224 QFHNHTTAAETNIIQNLQYFEHLSEYAADLVHIVTVQFNSVTLAEGIIRTLCSLEFNDND 283
Query: 721 NAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYK 780
G K +A FL +++ + + +L+ L+ ESY +R + ++ ++I+
Sbjct: 284 VKG---PKQVALFLVRLSSLIPNLCLKQLTQLVKLLDSESYTLRCAIIEVLANVVIDQIH 340
Query: 781 RE---DLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKV 814
E ++S+ +++L + + D+ + RTKV
Sbjct: 341 DEAQNEMSESVPATVQSLMDLLSERLLDISPYCRTKV 377
>sp|Q06156|CND1_YEAST Condensin complex subunit 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YCS4 PE=1 SV=1
Length = 1176
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 155/343 (45%), Gaps = 26/343 (7%)
Query: 133 TRLQKDYHKIV-----IDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKIN 187
T LQ + HK+ ++ A+ K +A + E + D + + N L SI ++L+ ++
Sbjct: 124 TFLQDELHKVSSQSTNLNRSAKNSKNDSA--NVELFKRDCN-QMENLLESITKLLEINLS 180
Query: 188 KLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTV 247
K++ ++ F+ + + ++E + V L++FI +I+ +K NHG S ++
Sbjct: 181 KIFQTTPEKDLFIGLFTRPLFVLLEIEPVTKVSS--LKMFIQRILAMCVK--NHGQSSSI 236
Query: 248 KIVQLLKNCE---HLVSPLAQAVVMFIRNHGCKSLVREIVREISA-MEDGNENAGQDSSK 303
+ L+ N HL A+ + + + L +I++EIS + + + G K
Sbjct: 237 Q-SSLMTNLTYFLHLSVFNAELLKLLNDEYNYPQLTEDILKEISTRVFNAKDTTG---PK 292
Query: 304 MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEA 363
I+ FL +++ ++ M ++ L S +R + ++ + + +
Sbjct: 293 AISNFLIKLSELSPGIMLRQMNLVITLLNNSSITLRCSVVEACGNIVAELAQDPQTMEHY 352
Query: 364 KEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSS 423
K+Q + +L + D + +VRTK +Q ++ + K A+ L D+SS
Sbjct: 353 KQQIAVLIELLEERFQDSNPYVRTKAIQGCSKICDLSSKFNKSKAKFTSLAVRSLQDRSS 412
Query: 424 NVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIK 466
V + +V+LL ++ +PF A +Q L L E+ E +K
Sbjct: 413 LVRRNSVKLLSKLLLKHPFKAIHGSQ------LRLSEWEEYLK 449
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 120/266 (45%), Gaps = 20/266 (7%)
Query: 558 TRLQKDYHKIV-----IDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKIN 612
T LQ + HK+ ++ A+ K +A + E + D + + N L SI ++L+ ++
Sbjct: 124 TFLQDELHKVSSQSTNLNRSAKNSKNDSA--NVELFKRDCN-QMENLLESITKLLEINLS 180
Query: 613 KLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTV 672
K++ ++ F+ + + ++E + V L++FI +I+ +K NHG S ++
Sbjct: 181 KIFQTTPEKDLFIGLFTRPLFVLLEIEPVTKVSS--LKMFIQRILAMCVK--NHGQSSSI 236
Query: 673 KIVQLLKNCE---HLVSPLAQAVVMFIRNHGCKSLVREIVREISA-MEDGNENAGQDSSK 728
+ L+ N HL A+ + + + L +I++EIS + + + G K
Sbjct: 237 Q-SSLMTNLTYFLHLSVFNAELLKLLNDEYNYPQLTEDILKEISTRVFNAKDTTG---PK 292
Query: 729 MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEA 788
I+ FL +++ ++ M ++ L S +R + ++ + + +
Sbjct: 293 AISNFLIKLSELSPGIMLRQMNLVITLLNNSSITLRCSVVEACGNIVAELAQDPQTMEHY 352
Query: 789 KEQRDEYLNVLLDHMHDVHTFVRTKV 814
K+Q + +L + D + +VRTK
Sbjct: 353 KQQIAVLIELLEERFQDSNPYVRTKA 378
>sp|Q552Q7|PDS5_DICDI Sister chromatid cohesion protein PDS5 homolog OS=Dictyostelium
discoideum GN=pds5 PE=3 SV=1
Length = 1450
Score = 38.1 bits (87), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 317 AEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLD 376
E++ PA++ L +LE + +R +++ Y E SDE QR L+
Sbjct: 423 PEFIYPALQNLEFDLEDVNASIRKGAAIVLSR----CYSTESASDELIAQRPTLYTTFLN 478
Query: 377 HMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436
HDV +RT +++ + + + ++L+ R D ++ +Q+ +
Sbjct: 479 RFHDVDIKIRTVMMEFSEHFTTTSDLEME---RVLKSVRDRFRDSEPDIRIKAIQIFQKY 535
Query: 437 IESNPFAAKATTQYYVQAELTLEEFNERIKD 467
I NP + EL + E+ ER++D
Sbjct: 536 IIKNP--------ELMNPEL-MSEYLERVRD 557
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 742 AEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLD 801
E++ PA++ L +LE + +R +++ Y E SDE QR L+
Sbjct: 423 PEFIYPALQNLEFDLEDVNASIRKGAAIVLSR----CYSTESASDELIAQRPTLYTTFLN 478
Query: 802 HMHDVHTFVRT 812
HDV +RT
Sbjct: 479 RFHDVDIKIRT 489
>sp|F5HSE3|NIPLA_DANRE Nipped-B-like protein A OS=Danio rerio GN=nipbla PE=2 SV=1
Length = 2381
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 368 DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAI-GRLMDKSSNVV 426
D YL +L + + VRTK ++ +V P ++R + GRLMD S++V
Sbjct: 1303 DIYLTQILRVLGESAIAVRTKAMKCLSEVVA--VDPSILARSDMQRGVHGRLMDNSTSVR 1360
Query: 427 KYTVQLLKTMIESNPFAAKATTQYY 451
+ V+LL + S P + T QYY
Sbjct: 1361 EAAVELLGRFVLSRP---QLTEQYY 1382
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 36.6 bits (83), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 368 DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKL-LERAI-GRLMDKSSNV 425
D YL +L + + VRTK ++ +V A+ + +L ++R + GRLMD S++V
Sbjct: 1807 DIYLTQILRVLGESAIAVRTKAMKCLSEVV---AVDPSILARLDMQRGVHGRLMDNSTSV 1863
Query: 426 VKYTVQLLKTMIESNPFAAKATTQYY 451
+ V+LL + S P + T QYY
Sbjct: 1864 REAAVELLGRFVLSRP---QLTEQYY 1886
>sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mis4 PE=1 SV=2
Length = 1587
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 57 ENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNV 116
E+ T+ S+L+ + EY+I +++ LL RSLK+ + DN S L + L E LN+
Sbjct: 543 EHLKTVESILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDN--SFAILTKILLEDLLNM 600
Query: 117 VKMTLWVFTEFII 129
+ + W TE II
Sbjct: 601 LSLPEWCGTETII 613
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 482 ENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNV 541
E+ T+ S+L+ + EY+I +++ LL RSLK+ + DN S L + L E LN+
Sbjct: 543 EHLKTVESILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDN--SFAILTKILLEDLLNM 600
Query: 542 VKMTLWVFTEFII 554
+ + W TE II
Sbjct: 601 LSLPEWCGTETII 613
>sp|Q9CYG7|TOM34_MOUSE Mitochondrial import receptor subunit TOM34 OS=Mus musculus
GN=Tomm34 PE=2 SV=1
Length = 309
Score = 33.5 bits (75), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 425 VVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENF 484
+ KY+ LL + +ES ++ +A L L+++ E +KDC EAL DG +N
Sbjct: 213 IEKYSESLLCSSLESATYSNRALCH------LVLKQYKEAVKDCTEALKLDG-----KNV 261
Query: 485 DTLYSMLTHFKSI-EYK 500
Y +K++ +YK
Sbjct: 262 KAFYRRAQAYKALKDYK 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,730,682
Number of Sequences: 539616
Number of extensions: 11928364
Number of successful extensions: 35790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 35653
Number of HSP's gapped (non-prelim): 183
length of query: 827
length of database: 191,569,459
effective HSP length: 126
effective length of query: 701
effective length of database: 123,577,843
effective search space: 86628067943
effective search space used: 86628067943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)