Query psy8182
Match_columns 827
No_of_seqs 255 out of 385
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0414|consensus 100.0 5.7E-78 1.2E-82 703.6 34.7 449 3-460 1-454 (1251)
2 KOG0414|consensus 100.0 8.2E-64 1.8E-68 585.0 30.8 370 448-826 21-391 (1251)
3 COG5098 Chromosome condensatio 100.0 5E-59 1.1E-63 516.7 30.8 403 37-455 28-436 (1128)
4 COG5098 Chromosome condensatio 100.0 1.5E-50 3.2E-55 449.4 25.3 346 462-825 28-377 (1128)
5 PF12922 Cnd1_N: non-SMC mitot 100.0 2.9E-35 6.3E-40 295.1 16.2 169 497-671 1-171 (171)
6 PF12922 Cnd1_N: non-SMC mitot 100.0 6.3E-35 1.4E-39 292.7 16.7 169 72-246 1-171 (171)
7 PF01602 Adaptin_N: Adaptin N 98.9 8.7E-06 1.9E-10 95.6 36.5 475 262-821 26-522 (526)
8 PTZ00429 beta-adaptin; Provisi 98.7 0.00021 4.5E-09 87.0 42.1 149 271-441 61-211 (746)
9 PF01602 Adaptin_N: Adaptin N 98.0 0.0097 2.1E-07 69.9 33.3 415 324-823 44-483 (526)
10 PTZ00429 beta-adaptin; Provisi 97.6 0.35 7.6E-06 59.4 38.6 99 328-441 74-172 (746)
11 PF12717 Cnd1: non-SMC mitotic 97.3 0.0016 3.5E-08 65.9 10.8 94 336-441 2-96 (178)
12 KOG1020|consensus 97.2 0.071 1.5E-06 67.5 25.2 74 367-441 814-887 (1692)
13 PF12348 CLASP_N: CLASP N term 96.9 0.023 4.9E-07 59.5 14.7 106 326-441 57-163 (228)
14 KOG1020|consensus 96.8 3.1 6.8E-05 53.6 36.4 128 302-441 797-924 (1692)
15 PF12348 CLASP_N: CLASP N term 96.4 0.049 1.1E-06 56.9 13.5 134 298-441 66-209 (228)
16 cd00020 ARM Armadillo/beta-cat 96.0 0.043 9.3E-07 50.3 9.4 108 324-437 9-119 (120)
17 COG5096 Vesicle coat complex, 95.9 0.15 3.1E-06 62.0 15.2 152 265-438 42-195 (757)
18 KOG1060|consensus 95.6 0.097 2.1E-06 62.5 12.1 138 275-434 68-205 (968)
19 KOG1525|consensus 95.5 5 0.00011 52.0 27.5 146 297-448 234-419 (1266)
20 PF13646 HEAT_2: HEAT repeats; 95.4 0.081 1.8E-06 46.3 8.3 86 324-434 1-88 (88)
21 COG5096 Vesicle coat complex, 95.3 0.11 2.3E-06 63.2 11.1 116 687-821 39-154 (757)
22 KOG1241|consensus 95.1 11 0.00024 45.8 34.0 155 278-438 319-477 (859)
23 COG5218 YCG1 Chromosome conden 95.1 0.61 1.3E-05 54.4 15.9 135 277-434 61-195 (885)
24 KOG1248|consensus 94.1 24 0.00051 45.0 29.1 247 178-438 490-767 (1176)
25 KOG1061|consensus 93.7 22 0.00047 43.4 27.9 155 274-451 45-204 (734)
26 PF13001 Ecm29: Proteasome sta 93.6 20 0.00043 42.5 27.8 164 646-819 296-484 (501)
27 PF10363 DUF2435: Protein of u 93.5 0.45 9.7E-06 43.1 8.6 72 370-441 4-75 (92)
28 PF12765 Cohesin_HEAT: HEAT re 93.2 0.11 2.3E-06 40.0 3.5 26 408-433 17-42 (42)
29 PF10508 Proteasom_PSMB: Prote 93.0 9.9 0.00021 45.0 21.4 198 221-424 173-393 (503)
30 KOG2025|consensus 92.8 0.67 1.4E-05 55.2 10.6 70 368-437 84-154 (892)
31 PF13646 HEAT_2: HEAT repeats; 92.2 0.19 4.2E-06 43.9 4.3 56 372-436 2-58 (88)
32 PRK09687 putative lyase; Provi 92.1 6.1 0.00013 43.1 16.6 87 326-435 132-218 (280)
33 KOG1824|consensus 92.1 13 0.00028 46.2 20.2 107 322-441 932-1039(1233)
34 KOG0946|consensus 92.1 36 0.00078 41.8 23.5 162 306-500 44-226 (970)
35 KOG2171|consensus 91.6 49 0.0011 42.2 40.8 176 327-516 85-279 (1075)
36 PF14500 MMS19_N: Dos2-interac 91.6 3.7 8.1E-05 44.4 14.2 159 326-506 3-165 (262)
37 cd03572 ENTH_epsin_related ENT 91.4 1.2 2.5E-05 42.5 8.8 71 366-438 35-119 (122)
38 PRK13800 putative oxidoreducta 90.8 7.6 0.00016 49.4 18.0 121 303-436 670-802 (897)
39 PF12717 Cnd1: non-SMC mitotic 90.8 4.1 8.9E-05 41.2 12.9 125 304-439 7-140 (178)
40 KOG1248|consensus 90.3 26 0.00056 44.6 21.0 171 246-441 721-901 (1176)
41 PF08506 Cse1: Cse1; InterPro 90.0 17 0.00038 41.3 18.2 219 198-431 133-368 (370)
42 PRK09687 putative lyase; Provi 89.7 1.9 4.2E-05 47.0 10.0 95 326-434 58-153 (280)
43 PF10508 Proteasom_PSMB: Prote 89.7 36 0.00078 40.3 21.4 208 196-434 51-268 (503)
44 KOG2160|consensus 89.5 1.5 3.3E-05 48.6 8.9 101 364-495 97-199 (342)
45 PF12755 Vac14_Fab1_bd: Vacuol 89.5 3.8 8.3E-05 37.4 10.2 93 338-437 2-95 (97)
46 cd00020 ARM Armadillo/beta-cat 89.1 0.55 1.2E-05 42.8 4.6 74 368-441 6-81 (120)
47 PF12755 Vac14_Fab1_bd: Vacuol 88.3 7.3 0.00016 35.6 11.1 90 301-397 6-95 (97)
48 PF13513 HEAT_EZ: HEAT-like re 87.4 0.65 1.4E-05 37.2 3.4 54 383-436 1-55 (55)
49 KOG2171|consensus 86.5 1.1E+02 0.0024 39.3 51.9 299 171-506 223-541 (1075)
50 COG5240 SEC21 Vesicle coat com 86.0 73 0.0016 37.9 19.6 208 223-439 318-556 (898)
51 KOG0211|consensus 85.8 15 0.00032 45.5 15.1 165 267-443 503-669 (759)
52 KOG1949|consensus 85.5 25 0.00053 42.6 15.9 181 239-443 140-335 (1005)
53 KOG2259|consensus 85.4 1.8 4E-05 51.3 6.8 96 326-435 377-472 (823)
54 KOG1060|consensus 85.4 3.2 6.9E-05 50.3 8.8 123 694-823 62-209 (968)
55 COG5218 YCG1 Chromosome conden 84.0 11 0.00024 44.5 12.1 77 361-437 83-160 (885)
56 PRK13800 putative oxidoreducta 83.9 3 6.4E-05 53.0 8.4 101 325-436 745-865 (897)
57 TIGR02270 conserved hypothetic 83.8 4 8.6E-05 47.0 8.7 84 325-434 120-203 (410)
58 KOG2038|consensus 83.2 60 0.0013 39.8 17.8 78 363-443 298-375 (988)
59 KOG1824|consensus 82.8 1.4E+02 0.0031 37.6 39.6 246 174-441 25-289 (1233)
60 PF12460 MMS19_C: RNAPII trans 81.5 1.1E+02 0.0023 35.3 28.7 360 374-777 4-395 (415)
61 KOG0213|consensus 81.3 1.4E+02 0.0031 36.7 37.2 434 264-816 635-1100(1172)
62 PF02985 HEAT: HEAT repeat; I 80.6 3 6.5E-05 29.5 3.9 27 412-438 3-29 (31)
63 KOG0413|consensus 80.4 13 0.00028 46.2 11.2 144 303-461 946-1094(1529)
64 KOG1240|consensus 80.1 84 0.0018 40.5 18.2 237 186-439 446-726 (1431)
65 PF02985 HEAT: HEAT repeat; I 78.7 3.6 7.7E-05 29.1 3.9 28 324-351 2-29 (31)
66 PF12830 Nipped-B_C: Sister ch 78.5 9.3 0.0002 39.0 8.4 71 367-441 6-77 (187)
67 KOG4653|consensus 76.8 53 0.0011 40.8 14.9 134 298-440 781-920 (982)
68 PF11707 Npa1: Ribosome 60S bi 75.4 1.3E+02 0.0028 33.6 17.1 172 326-507 8-202 (330)
69 PF12460 MMS19_C: RNAPII trans 75.4 1.6E+02 0.0035 33.9 22.5 174 263-441 171-397 (415)
70 KOG2023|consensus 75.0 38 0.00083 40.8 12.8 110 323-441 175-287 (885)
71 KOG2140|consensus 73.2 82 0.0018 37.1 14.5 127 649-781 180-312 (739)
72 PF12719 Cnd3: Nuclear condens 72.6 1.2E+02 0.0026 33.2 15.8 94 310-404 52-149 (298)
73 cd03572 ENTH_epsin_related ENT 72.5 3.7 8.1E-05 39.2 3.4 34 792-825 36-69 (122)
74 TIGR02270 conserved hypothetic 71.4 14 0.00031 42.6 8.4 87 324-436 88-174 (410)
75 KOG2023|consensus 71.3 2.5E+02 0.0054 34.3 28.5 130 302-439 372-506 (885)
76 COG5240 SEC21 Vesicle coat com 71.1 1.6E+02 0.0036 35.2 16.4 150 302-456 285-460 (898)
77 PF13001 Ecm29: Proteasome sta 70.8 72 0.0016 37.8 14.3 107 298-406 386-496 (501)
78 KOG2149|consensus 70.3 11 0.00023 42.7 6.8 75 366-440 55-130 (393)
79 PF13513 HEAT_EZ: HEAT-like re 69.8 15 0.00032 29.2 5.9 54 337-396 2-55 (55)
80 KOG0413|consensus 69.7 3.2E+02 0.0069 34.9 25.7 397 370-822 617-1034(1529)
81 COG1413 FOG: HEAT repeat [Ener 69.4 1.2E+02 0.0027 33.3 15.2 45 301-350 89-134 (335)
82 KOG2011|consensus 68.5 1.7E+02 0.0037 37.6 17.1 63 375-439 293-356 (1048)
83 KOG1967|consensus 67.5 78 0.0017 39.7 13.5 178 239-432 810-1018(1030)
84 KOG1242|consensus 67.5 92 0.002 37.3 13.9 132 303-444 118-252 (569)
85 cd00197 VHS_ENTH_ANTH VHS, ENT 66.2 27 0.00058 32.5 7.7 69 368-436 36-113 (115)
86 smart00544 MA3 Domain in DAP-5 65.0 55 0.0012 30.1 9.6 75 365-439 32-109 (113)
87 COG2733 Predicted membrane pro 65.0 76 0.0016 36.1 11.9 135 368-512 182-327 (415)
88 PF04118 Dopey_N: Dopey, N-ter 63.2 74 0.0016 35.3 11.6 70 369-443 173-256 (307)
89 KOG0213|consensus 62.3 1.8E+02 0.0038 36.0 14.7 216 203-436 923-1140(1172)
90 KOG2259|consensus 61.6 40 0.00087 40.6 9.4 97 334-441 170-266 (823)
91 KOG2160|consensus 61.5 41 0.00089 37.7 9.1 115 324-443 126-245 (342)
92 KOG2933|consensus 60.2 80 0.0017 34.9 10.8 117 305-432 108-228 (334)
93 COG5181 HSH155 U2 snRNP splice 59.9 2.6E+02 0.0057 33.8 15.4 214 203-434 728-943 (975)
94 PLN03200 cellulose synthase-in 59.9 1E+02 0.0022 42.5 13.8 140 298-443 622-769 (2102)
95 PF12765 Cohesin_HEAT: HEAT re 59.3 11 0.00023 29.0 3.0 26 368-393 17-42 (42)
96 COG1413 FOG: HEAT repeat [Ener 58.7 37 0.00079 37.5 8.4 66 323-403 75-140 (335)
97 KOG1078|consensus 57.7 4.6E+02 0.0099 32.7 17.3 127 309-438 378-532 (865)
98 PF11864 DUF3384: Domain of un 57.5 3.7E+02 0.0081 31.5 33.0 181 39-244 10-212 (464)
99 KOG1820|consensus 57.3 2.3E+02 0.0051 35.7 15.5 132 300-443 310-448 (815)
100 KOG1241|consensus 57.1 1.8E+02 0.0039 35.9 13.8 116 703-824 319-436 (859)
101 PF11732 Thoc2: Transcription- 56.9 24 0.00051 31.0 5.1 71 664-738 6-76 (77)
102 KOG1991|consensus 54.8 5.7E+02 0.012 32.7 21.0 254 242-523 615-880 (1010)
103 smart00543 MIF4G Middle domain 52.7 1.6E+02 0.0034 29.4 11.3 77 722-806 91-177 (200)
104 PF09759 Atx10homo_assoc: Spin 52.5 24 0.00052 32.6 4.7 56 763-825 2-61 (102)
105 PF02847 MA3: MA3 domain; Int 52.1 74 0.0016 29.1 8.0 75 365-439 32-109 (113)
106 PF11864 DUF3384: Domain of un 51.1 4.7E+02 0.01 30.7 32.5 207 382-668 3-211 (464)
107 KOG0368|consensus 51.1 5.7E+02 0.012 34.4 17.2 196 617-820 838-1080(2196)
108 KOG2140|consensus 49.4 2E+02 0.0042 34.2 12.0 105 247-355 201-311 (739)
109 PF12422 Condensin2nSMC: Conde 49.2 2.7E+02 0.0059 27.4 13.1 103 332-435 39-145 (152)
110 PF14225 MOR2-PAG1_C: Cell mor 48.4 1.5E+02 0.0031 32.2 10.6 86 261-353 133-219 (262)
111 PF08167 RIX1: rRNA processing 47.4 3E+02 0.0065 27.4 13.1 125 364-497 20-148 (165)
112 KOG2025|consensus 47.4 6.5E+02 0.014 31.2 36.4 128 300-435 57-190 (892)
113 PF02854 MIF4G: MIF4G domain; 46.9 1.2E+02 0.0027 30.1 9.5 78 721-805 97-185 (209)
114 PF14500 MMS19_N: Dos2-interac 45.5 1.9E+02 0.0041 31.3 11.0 103 417-522 7-118 (262)
115 KOG3687|consensus 45.5 4.4E+02 0.0096 33.7 14.6 130 373-510 432-575 (1697)
116 PF14225 MOR2-PAG1_C: Cell mor 44.6 1.6E+02 0.0034 32.0 10.1 86 686-778 133-219 (262)
117 COG5593 Nucleic-acid-binding p 43.4 3.1E+02 0.0066 32.6 12.4 76 364-442 186-261 (821)
118 KOG1820|consensus 43.1 2.4E+02 0.0052 35.6 12.6 119 318-441 248-368 (815)
119 PF11422 IBP39: Initiator bind 42.9 38 0.00082 34.3 4.6 65 386-454 18-84 (181)
120 KOG0915|consensus 42.6 1E+03 0.022 32.2 24.3 103 671-776 1200-1306(1702)
121 PF14911 MMS22L_C: S-phase gen 41.3 6E+02 0.013 29.1 14.5 91 336-443 202-292 (373)
122 KOG1078|consensus 41.0 6.7E+02 0.014 31.4 15.2 150 305-457 265-440 (865)
123 KOG0212|consensus 40.7 3.6E+02 0.0078 32.4 12.5 73 367-442 165-244 (675)
124 PF10408 Ufd2P_core: Ubiquitin 40.4 7.7E+02 0.017 30.1 22.1 243 537-811 245-506 (629)
125 KOG1061|consensus 40.3 42 0.00091 41.0 5.3 105 698-821 44-148 (734)
126 KOG1058|consensus 39.4 8.7E+02 0.019 30.4 22.8 54 381-439 111-164 (948)
127 PF01417 ENTH: ENTH domain; I 39.0 1.1E+02 0.0024 28.9 7.1 70 365-436 35-119 (125)
128 PF11732 Thoc2: Transcription- 38.3 50 0.0011 29.0 4.2 71 239-313 6-76 (77)
129 PF01347 Vitellogenin_N: Lipop 38.1 2.6E+02 0.0057 33.7 12.0 190 222-441 378-589 (618)
130 PF12530 DUF3730: Protein of u 37.8 3.4E+02 0.0074 28.7 11.3 122 263-393 104-234 (234)
131 cd00197 VHS_ENTH_ANTH VHS, ENT 37.6 1.5E+02 0.0032 27.5 7.7 90 706-821 18-113 (115)
132 KOG1949|consensus 36.6 2.1E+02 0.0046 35.1 10.1 166 298-477 237-406 (1005)
133 PF10408 Ufd2P_core: Ubiquitin 36.0 8.9E+02 0.019 29.6 17.6 344 112-506 245-621 (629)
134 KOG4653|consensus 35.8 5.5E+02 0.012 32.5 13.5 73 369-441 727-800 (982)
135 PF03224 V-ATPase_H_N: V-ATPas 34.9 82 0.0018 34.7 6.4 107 333-442 68-183 (312)
136 PF00514 Arm: Armadillo/beta-c 33.8 64 0.0014 24.0 3.7 27 749-775 14-40 (41)
137 KOG2956|consensus 33.6 8.6E+02 0.019 28.7 15.4 189 169-378 302-506 (516)
138 PF14676 FANCI_S2: FANCI solen 33.4 3.5E+02 0.0076 27.0 9.9 105 279-393 52-156 (158)
139 KOG1077|consensus 33.3 1E+03 0.023 29.6 17.0 214 198-436 142-396 (938)
140 KOG1242|consensus 33.0 9.6E+02 0.021 29.0 27.8 378 317-777 50-445 (569)
141 PF05004 IFRD: Interferon-rela 32.9 7.1E+02 0.015 27.5 17.1 135 301-441 106-260 (309)
142 KOG0368|consensus 32.1 1.4E+03 0.031 31.0 16.6 196 192-395 838-1080(2196)
143 PF12030 DUF3517: Domain of un 32.1 7.9E+02 0.017 27.8 15.4 165 655-823 133-322 (337)
144 PHA00438 hypothetical protein 32.0 74 0.0016 27.8 4.1 61 629-696 2-62 (81)
145 cd03561 VHS VHS domain family; 31.9 1.9E+02 0.004 27.8 7.5 70 369-439 37-113 (133)
146 PF12830 Nipped-B_C: Sister ch 31.9 1.8E+02 0.0039 29.6 7.8 73 318-400 4-76 (187)
147 PF10911 DUF2717: Protein of u 31.0 1.4E+02 0.003 26.2 5.5 62 629-697 2-63 (77)
148 PF14838 INTS5_C: Integrator c 30.9 1.1E+03 0.024 29.2 17.5 59 226-287 199-266 (696)
149 COG5537 IRR1 Cohesin [Cell div 30.7 3.2E+02 0.0069 33.1 10.2 71 372-444 278-349 (740)
150 smart00273 ENTH Epsin N-termin 30.3 3.2E+02 0.007 25.7 8.8 73 365-437 35-118 (127)
151 KOG1525|consensus 29.7 1.2E+03 0.026 31.1 16.1 113 702-820 202-326 (1266)
152 PF00514 Arm: Armadillo/beta-c 29.2 83 0.0018 23.4 3.7 27 324-350 14-40 (41)
153 cd03571 ENTH_epsin ENTH domain 29.2 2.2E+02 0.0047 27.3 7.3 70 366-435 34-115 (123)
154 cd06561 AlkD_like A new struct 28.9 6E+02 0.013 25.4 13.0 89 325-431 108-197 (197)
155 PF06685 DUF1186: Protein of u 27.9 2.3E+02 0.005 30.5 8.0 56 342-408 97-152 (249)
156 cd06561 AlkD_like A new struct 27.9 3E+02 0.0066 27.6 8.8 66 372-441 108-173 (197)
157 PF14228 MOR2-PAG1_mid: Cell m 27.8 1.5E+03 0.033 29.8 19.3 256 170-437 258-571 (1120)
158 PF08569 Mo25: Mo25-like; Int 27.2 9.3E+02 0.02 27.1 18.8 188 221-441 89-285 (335)
159 PF14764 SPG48: AP-5 complex s 27.1 1.9E+02 0.004 33.9 7.6 149 278-438 262-414 (459)
160 PF02854 MIF4G: MIF4G domain; 26.8 6.2E+02 0.014 24.9 14.0 98 386-510 103-203 (209)
161 PF10363 DUF2435: Protein of u 26.5 3.1E+02 0.0067 24.8 7.4 69 324-399 5-73 (92)
162 KOG0946|consensus 26.4 1.2E+03 0.026 29.4 14.2 189 223-441 38-244 (970)
163 KOG1240|consensus 25.4 7.7E+02 0.017 32.5 12.7 174 186-398 400-607 (1431)
164 KOG1059|consensus 25.1 1.4E+03 0.031 28.5 21.9 187 302-497 315-536 (877)
165 PF04826 Arm_2: Armadillo-like 24.8 5.5E+02 0.012 27.7 10.3 109 323-441 55-165 (254)
166 PF08713 DNA_alkylation: DNA a 24.7 1.7E+02 0.0037 29.8 6.3 69 368-441 119-187 (213)
167 PF11838 ERAP1_C: ERAP1-like C 24.5 9.1E+02 0.02 26.0 12.7 93 319-417 78-182 (324)
168 PF09759 Atx10homo_assoc: Spin 24.2 1.7E+02 0.0036 27.2 5.3 56 338-400 2-61 (102)
169 KOG1293|consensus 24.1 3.9E+02 0.0084 32.6 9.5 130 303-439 402-534 (678)
170 PF05536 Neurochondrin: Neuroc 24.0 1.3E+03 0.028 27.7 25.9 325 373-744 144-498 (543)
171 cd03561 VHS VHS domain family; 23.2 1.1E+02 0.0024 29.3 4.2 33 408-440 36-68 (133)
172 PF04286 DUF445: Protein of un 22.8 1E+03 0.022 26.1 15.7 200 595-802 38-246 (367)
173 PF05918 API5: Apoptosis inhib 22.8 1.4E+03 0.031 27.6 21.3 322 264-609 43-440 (556)
174 KOG2956|consensus 22.5 1.3E+03 0.029 27.2 16.0 153 364-527 324-490 (516)
175 smart00273 ENTH Epsin N-termin 22.4 2.8E+02 0.006 26.2 6.8 28 376-403 97-124 (127)
176 PF08631 SPO22: Meiosis protei 22.4 9.9E+02 0.021 25.7 17.8 166 628-803 58-233 (278)
177 KOG1104|consensus 22.2 1E+03 0.023 29.5 12.7 130 596-756 20-156 (759)
178 PF11841 DUF3361: Domain of un 21.2 5.6E+02 0.012 25.8 8.7 77 382-465 30-111 (160)
179 PF04826 Arm_2: Armadillo-like 21.1 3.8E+02 0.0082 28.9 8.2 112 322-442 12-128 (254)
180 smart00543 MIF4G Middle domain 20.7 8.2E+02 0.018 24.1 15.0 96 386-510 96-194 (200)
181 PF13764 E3_UbLigase_R4: E3 ub 20.6 9.4E+02 0.02 30.5 12.4 72 611-686 555-634 (802)
182 PF14726 RTTN_N: Rotatin, an a 20.5 4.5E+02 0.0098 24.2 7.3 65 674-754 32-96 (98)
183 PF14726 RTTN_N: Rotatin, an a 20.4 3.5E+02 0.0076 24.9 6.6 65 249-329 32-96 (98)
184 smart00185 ARM Armadillo/beta- 20.4 1.5E+02 0.0031 21.3 3.5 27 749-775 14-40 (41)
185 PF03405 FA_desaturase_2: Fatt 20.1 5.2E+02 0.011 29.1 9.1 101 694-803 176-302 (330)
No 1
>KOG0414|consensus
Probab=100.00 E-value=5.7e-78 Score=703.65 Aligned_cols=449 Identities=28% Similarity=0.444 Sum_probs=412.0
Q ss_pred CcceeeccCCchhhhhcCCCCCceecccCChhhhHHHHHHHHHHhcCCCCchhhhhhhHHHHhhhccCCccHHHHHHHHH
Q psy8182 3 GVLEFVIPSSKDELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYT 82 (827)
Q Consensus 3 ~~~~F~iP~~~~dL~~~~~~~~y~v~~~~~~~~i~~~L~~~~~~l~~~~~~~I~e~FD~l~sl~~~~~~l~~~~~~~l~~ 82 (827)
|+.+|+.|++..++...++..+|++.++.+..+++.++..+..+.+..+|.+++++||++||++++|.+++++.|+.+.
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~~~~~~~~~~~~~~~~d~ld~vysl~~~f~sl~~s~q~~~~- 79 (1251)
T KOG0414|consen 1 QDLQFLLPLSEYDLINSSGDPQYVVKEIFSAQELPVKLDEFDRSVRLMDPDFDLDHLDTVYSLLEDFESLAPSLQNWLS- 79 (1251)
T ss_pred CcchhhcCCCHHHHHhccCCHHHHHHhcccccccchhHHHHHhhhhhcCchhhHHHHHHHHHHHhchhhcCHHHHHHHH-
Confidence 5689999999999999988779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhhcCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Q psy8182 83 KLLLRSLKEFSSILDNFLSGDSLDEELQ-EKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNE 161 (827)
Q Consensus 83 d~l~s~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~lkm~~fll~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~ 161 (827)
+++.|.++.+...+...+........+. .+|+|+.||+.|+...++...+...........-+.+||+|+... ..
T Consensus 80 ~~l~s~lsvls~~~~~~~~~~~~~~~~~~~s~lna~km~~f~qi~v~~~~e~~~~s~~~~~~l~~~~k~kk~~~----n~ 155 (1251)
T KOG0414|consen 80 EFLRSNLSVLSADLDAILDSTACLFTDLSNSYLNALKMGPFLQILVTKLKENGVSSVRRDQNLNVSGKLKKQSG----NL 155 (1251)
T ss_pred HHHHHHHHhhccccccchhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhccchhhhhchhhhhhccccCccc----ch
Confidence 9999999999999999887654333333 889999999999999999888875532111111122444332211 22
Q ss_pred cccCcchHhHHHHHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcc
Q psy8182 162 KMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNH 241 (827)
Q Consensus 162 ~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~ 241 (827)
..+|+|+.+|++++..|.++|++++++||++++++|+|+++|++|||.++||+.+. |+.+++++||+|||.++|+|||
T Consensus 156 ~~~~~~e~~r~~~l~~i~~lLqinlskL~~~s~~~e~flsl~~~~~yrllEn~~~~--k~~~t~~ai~~ilg~s~k~~~~ 233 (1251)
T KOG0414|consen 156 ASGFNWEKQRNKLLCLIAQLLQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEHVN--KNSSTKDAIFRILGSSVKRYNQ 233 (1251)
T ss_pred hhccccccccchHHHHHHHHHHhhHHHhcCCChhHHHHHHHHHHHHHHHhcccccc--cchHHHHHHHHHHHHHHHHhhh
Confidence 44699999999999999999999999999999999999999999999999998755 9999999999999999999999
Q ss_pred ccchhhhHHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHH
Q psy8182 242 GISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVI 321 (827)
Q Consensus 242 ~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l 321 (827)
..+++++|+|+|+||||++++.|+++..+.++||+.+|++.|+|+|+..++++ +|++|+|+++.||++||+++|.+++
T Consensus 234 ~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~elS~~~P~l~~ 311 (1251)
T KOG0414|consen 234 CSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVELSERVPKLML 311 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhc--ccccchhhHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC
Q psy8182 322 PAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKA 401 (827)
Q Consensus 322 ~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~ 401 (827)
++|+.|++|||+|||+|||||+|+|||++.+.++++++++..++.|+.+++.|.||++|+|||||+||||+|.+||+.++
T Consensus 312 ~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 312 RQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhH----HHHhhhhhhh
Q psy8182 402 IPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQY----YVQAELTLEE 460 (827)
Q Consensus 402 iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~----~v~ev~~l~e 460 (827)
+|++++++|++.|+|||+|||++||||||||++++|.+|||+++++.+. |++++.++.+
T Consensus 392 ~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~ 454 (1251)
T KOG0414|consen 392 IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEE 454 (1251)
T ss_pred CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999998887777 7887777663
No 2
>KOG0414|consensus
Probab=100.00 E-value=8.2e-64 Score=585.03 Aligned_cols=370 Identities=26% Similarity=0.383 Sum_probs=340.3
Q ss_pred hhHHHHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy8182 448 TQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSG 527 (827)
Q Consensus 448 ~~~~v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~ 527 (827)
.+.+++++.+.++++.++.++..+.+.-+|.+++++||++||++++|.+++++.|..+. +++.+.++.++..++.+...
T Consensus 21 ~~~~~~~~~~~~e~~~k~~~~~~~~~~~~~~~~~d~ld~vysl~~~f~sl~~s~q~~~~-~~l~s~lsvls~~~~~~~~~ 99 (1251)
T KOG0414|consen 21 PQYVVKEIFSAQELPVKLDEFDRSVRLMDPDFDLDHLDTVYSLLEDFESLAPSLQNWLS-EFLRSNLSVLSADLDAILDS 99 (1251)
T ss_pred HHHHHHhcccccccchhHHHHHhhhhhcCchhhHHHHHHHHHHHhchhhcCHHHHHHHH-HHHHHHHHhhccccccchhh
Confidence 35569999999999999999999999999999999999999999999999999999999 99999999999999998887
Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHH
Q psy8182 528 DSLDEELQ-EKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQI 606 (827)
Q Consensus 528 ~~~~~~~~-~~~~~~lkm~~fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~ 606 (827)
......+. .+|+|++||+.|+...++...+...........-..+||+|+... +-..+|+|+.+|+++|..|.++
T Consensus 100 ~~~~~~~~~~s~lna~km~~f~qi~v~~~~e~~~~s~~~~~~l~~~~k~kk~~~----n~~~~~~~e~~r~~~l~~i~~l 175 (1251)
T KOG0414|consen 100 TACLFTDLSNSYLNALKMGPFLQILVTKLKENGVSSVRRDQNLNVSGKLKKQSG----NLASGFNWEKQRNKLLCLIAQL 175 (1251)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHHHHHhccchhhhhchhhhhhccccCccc----chhhccccccccchHHHHHHHH
Confidence 65433333 899999999999999999999876643333332233455433211 1244799999999999999999
Q ss_pred hccccccccCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcccch
Q psy8182 607 LKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVS 686 (827)
Q Consensus 607 L~l~l~~lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Ehl~~ 686 (827)
|++++++||.+++++|+|+++|++|||+++||+. +.|+.+++++||+|||.++|+|||..+++++|+|+|+||||++.
T Consensus 176 LqinlskL~~~s~~~e~flsl~~~~~yrllEn~~--~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~ 253 (1251)
T KOG0414|consen 176 LQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEH--VNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAV 253 (1251)
T ss_pred HHhhHHHhcCCChhHHHHHHHHHHHHHHHhcccc--cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhH
Q psy8182 687 PLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNC 766 (827)
Q Consensus 687 ~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~a 766 (827)
+.|++|+.+..+|++.+|++.|+|+|+..+|++ +|++|||+++.||++||+++|++++++|+.|++|||+|||+||||
T Consensus 254 ~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRna 331 (1251)
T KOG0414|consen 254 HVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNA 331 (1251)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhcccchhc--ccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 999999999999999999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHhhcCCC
Q psy8182 767 TLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQPN 826 (827)
Q Consensus 767 Vlev~g~ii~~~l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~lc~~~~ 826 (827)
|+|+|||+|.+.++++++++..|++|++|+++|.||++|+|||||+||||+|.+||+|+-
T Consensus 332 vlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 332 VLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999973
No 3
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=100.00 E-value=5e-59 Score=516.73 Aligned_cols=403 Identities=15% Similarity=0.186 Sum_probs=350.9
Q ss_pred HHHHHHHHHHhc-CCCCchhhhhhhHHHHhhhccCCccHHHHHHHHHHHHHhHHHHHHHHHHhhhcCC-CCCHHHHHHHH
Q psy8182 37 NERIKDCFEALD-NDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGD-SLDEELQEKYL 114 (827)
Q Consensus 37 ~~~L~~~~~~l~-~~~~~~I~e~FD~l~sl~~~~~~l~~~~~~~l~~d~l~s~~~~l~~~~~~~l~~~-~~~~~~~~~~~ 114 (827)
...++.+++.+- .....+-+|..+.++.++++|++++++++.++. |++.|+++.....+...+... +-..+++.
T Consensus 28 s~~ln~iid~l~v~~q~~~~~d~le~l~~lc~~f~~l~~~l~~~is-~L~ts~vs~~s~d~~~~vS~n~nftipQ~n--- 103 (1128)
T COG5098 28 SRELNVIIDQLAVSEQIDASPDSLEALIDLCHDFPHLQKELEILIS-KLKTSTVSDNSEDYNYLVSHNVNFTIPQCN--- 103 (1128)
T ss_pred hHHHHHHHHHHHhhccccCChHHHHHHHHHHhcchhhCHHHHHHHH-HHHHhhccchhHHHHHHHhcCCCCCCcccc---
Confidence 346666777661 233445557888899999999999999999999 999999999999999988764 22345554
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccCcchHhHHHHHHHHHHHhcchhhcccCCCc
Q psy8182 115 NVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPV 194 (827)
Q Consensus 115 ~~lkm~~fll~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~ 194 (827)
++-+.|+++-++..................|++|+..++ ..+|.=.+|.+..|..+..+++..+++.|.|++
T Consensus 104 --le~~g~~fqll~s~l~~~l~v~~s~sTn~~k~~kkndsa------n~~~~~~n~me~LL~~Iv~l~~~~ls~~~~Ts~ 175 (1128)
T COG5098 104 --LENKGRIFQLLKSKLNSPLEVAPSLSTNVSKLEKKNDSA------NVEKRDCNQMEDLLPKIVDLIRGCLSNSRETSE 175 (1128)
T ss_pred --ccchhhHHHHHHHhccChhhhhhhhhchhhhcCcCCCcc------ccccccchHHHHHHHHHHHHHHHHhhccccCcH
Confidence 555677776666555432211101111112666644322 222444599999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHHhh
Q psy8182 195 VEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNH 274 (827)
Q Consensus 195 ~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~ 274 (827)
+++-|+.+|++|.|.+||.+... |+.+.+..+++|+|.+|+.|||..+....++++|+||+|++.++||++..+..+|
T Consensus 176 e~d~fl~Lfl~p~~~llE~e~~~--kv~s~~~~~~rI~g~~v~~hnh~~~~~~~~~snl~yf~hls~~~aeli~~isde~ 253 (1128)
T COG5098 176 EMDKFLFLFLEPTKVLLERERDS--KVRSRLLECIRIYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISDEL 253 (1128)
T ss_pred HHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHHHHHhcchhHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHh
Confidence 99999999999999999999765 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q psy8182 275 GCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVY 354 (827)
Q Consensus 275 ~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~ 354 (827)
++.++.++|+++++..+|+ .+|.+|||.+|.||.+||++.|.+|++|+.++..+||+|||+||||++|+|||+|....
T Consensus 254 n~~~l~edi~~~l~~l~fn--~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~ 331 (1128)
T COG5098 254 NRCALKEDIPVLLKNLSFN--LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFK 331 (1128)
T ss_pred hhhhhhcccHHHHhhceee--cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 59999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 355 KREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 355 ~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
++++..++++++.+.+.++|.||+.|.|||||+||||++.++|+.+.+..+++++++++++|||+|||+.||||||+|++
T Consensus 332 ~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~S 411 (1128)
T COG5098 332 KDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCS 411 (1128)
T ss_pred cchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 88877889999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHhhCCCC----CCCChhHHHHhh
Q psy8182 435 TMIESNPFA----AKATTQYYVQAE 455 (827)
Q Consensus 435 ~ll~~nPf~----~~L~~~~~v~ev 455 (827)
++|.+|||+ ++|++..|++..
T Consensus 412 kLL~~HPF~~~h~~~l~~~~wek~L 436 (1128)
T COG5098 412 KLLMRHPFASEHGSQLRLTLWEKNL 436 (1128)
T ss_pred HHHhcCChhhhccchhhhHHHHhhc
Confidence 999999995 799999995443
No 4
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-50 Score=449.43 Aligned_cols=346 Identities=14% Similarity=0.149 Sum_probs=303.1
Q ss_pred hhhHhhhhhhcC-CCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCC-CCHHHHHHHH
Q psy8182 462 NERIKDCFEALD-NDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDS-LDEELQEKYL 539 (827)
Q Consensus 462 ~~~L~e~~~Al~-~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~~~-~~~~~~~~~~ 539 (827)
...++.+++.+. .+..++.|+.++.++.++++|.++++..+.++. +++.++++..+..+..+++.+. -..++++
T Consensus 28 s~~ln~iid~l~v~~q~~~~~d~le~l~~lc~~f~~l~~~l~~~is-~L~ts~vs~~s~d~~~~vS~n~nftipQ~n--- 103 (1128)
T COG5098 28 SRELNVIIDQLAVSEQIDASPDSLEALIDLCHDFPHLQKELEILIS-KLKTSTVSDNSEDYNYLVSHNVNFTIPQCN--- 103 (1128)
T ss_pred hHHHHHHHHHHHhhccccCChHHHHHHHHHHhcchhhCHHHHHHHH-HHHHhhccchhHHHHHHHhcCCCCCCcccc---
Confidence 444556664443 466777899999999999999999999999999 9999999999999999887653 3445554
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccch--hhhhhhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHHhccccccccCC
Q psy8182 540 NVVKMTLWVFTEFIINFETRLQKDYHKI--VIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDP 617 (827)
Q Consensus 540 ~~lkm~~fLl~~~~~~~e~~~~~~~~~~--~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~ 617 (827)
++-++|+++-++........ ..++ .-..||+|+...+ +-+|+-.+|.+..|..+.++++..+++.|.|
T Consensus 104 --le~~g~~fqll~s~l~~~l~--v~~s~sTn~~k~~kkndsa------n~~~~~~n~me~LL~~Iv~l~~~~ls~~~~T 173 (1128)
T COG5098 104 --LENKGRIFQLLKSKLNSPLE--VAPSLSTNVSKLEKKNDSA------NVEKRDCNQMEDLLPKIVDLIRGCLSNSRET 173 (1128)
T ss_pred --ccchhhHHHHHHHhccChhh--hhhhhhchhhhcCcCCCcc------ccccccchHHHHHHHHHHHHHHHHhhccccC
Confidence 55566666555554443221 1111 1123776644332 3346556999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcccchHHHHHHHHHHH
Q psy8182 618 PVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIR 697 (827)
Q Consensus 618 ~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Ehl~~~~Ae~v~~l~~ 697 (827)
++++|.|+.+|++|.|.+||.+. ..|+.+.+..+|+|+|.+|+.|||..+++..++++|+||+|++.+.||++..+..
T Consensus 174 s~e~d~fl~Lfl~p~~~llE~e~--~~kv~s~~~~~~rI~g~~v~~hnh~~~~~~~~~snl~yf~hls~~~aeli~~isd 251 (1128)
T COG5098 174 SEEMDKFLFLFLEPTKVLLERER--DSKVRSRLLECIRIYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISD 251 (1128)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhcchhHHHHHHhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhHHHHHHHHHHHH
Q psy8182 698 NHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLIN 777 (827)
Q Consensus 698 ~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ii~~ 777 (827)
+|++++++++|++++++.+|++ +|.+|||.+|.||++||+++|.+|++|+..+..+|||||||||||++|+|||+|.+
T Consensus 252 e~n~~~l~edi~~~l~~l~fn~--~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~ 329 (1128)
T COG5098 252 ELNRCALKEDIPVLLKNLSFNL--PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEH 329 (1128)
T ss_pred HhhhhhhhcccHHHHhhceeec--ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHhhcCC
Q psy8182 778 VYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQP 825 (827)
Q Consensus 778 ~l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~lc~~~ 825 (827)
..+.++..++++++.+.+.++|.||+.|.+||||+||||+|.|+||-|
T Consensus 330 ~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 330 FKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc
Confidence 999888899999999999999999999999999999999999999976
No 5
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=100.00 E-value=2.9e-35 Score=295.07 Aligned_cols=169 Identities=25% Similarity=0.481 Sum_probs=142.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccch-hhhhhhh
Q psy8182 497 IEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKD-YHKI-VIDAKAR 574 (827)
Q Consensus 497 l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~~~~~~~~~~~~~~~lkm~~fLl~~~~~~~e~~~~~~-~~~~-~~~~kg~ 574 (827)
||++.+.|++ |+|+++++.++..+...+++. .+.+++..|++++|||+||++|++..+|++++.. .++. ...++++
T Consensus 1 L~~~~~~~l~-dll~s~l~~l~~~~~~~l~~~-~~~~~~~~~r~aLkmy~yLl~~l~~~~e~~~~~~~~~~~~~~~~~~~ 78 (171)
T PF12922_consen 1 LSPSLKNQLL-DLLCSSLSNLSDSIQSLLESS-DDEDSRASHRNALKMYGYLLHWLLEALEKEASAKSSKSASKKSGKGK 78 (171)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCC
Confidence 6899999999 999999999999999999877 5678889999999999999999999999653211 1111 1111121
Q ss_pred hhhhhhhhhhcccccCcchhhHHHHHHHHHHHhccccccccCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHH
Q psy8182 575 KVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIF 654 (827)
Q Consensus 575 k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if 654 (827)
+++++. +....+.|+|++||+++|++|.++|++||+|||+|+++||+||+||+||||++||||+ ++|++++|++||
T Consensus 79 ~~~~~~--~~~~~~~~~w~~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~--~~K~~~ik~~if 154 (171)
T PF12922_consen 79 KKKKKK--KKKKEESWDWESQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPE--IVKNKSIKDAIF 154 (171)
T ss_pred CCCCCC--CCccccCCCcHHHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChH--hhccHHHHHHHH
Confidence 211111 2234678999999999999999999999999999999999999999999999999998 789999999999
Q ss_pred HHHHHHHHhhCcchhhH
Q psy8182 655 QIVGYLIKRYNHGISCT 671 (827)
Q Consensus 655 ~il~~~vk~y~h~~~~~ 671 (827)
+|||++||+|||++++|
T Consensus 155 ~il~~~vk~h~h~~~~q 171 (171)
T PF12922_consen 155 RILGTAVKKHNHALSAQ 171 (171)
T ss_pred HHHHHHHHHcccccccC
Confidence 99999999999999886
No 6
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=100.00 E-value=6.3e-35 Score=292.66 Aligned_cols=169 Identities=26% Similarity=0.486 Sum_probs=142.5
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhh-hhhh
Q psy8182 72 IEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKI-VID-AKAR 149 (827)
Q Consensus 72 l~~~~~~~l~~d~l~s~~~~l~~~~~~~l~~~~~~~~~~~~~~~~lkm~~fll~~~~~~~e~~~~~~~~~~-~~~-~kg~ 149 (827)
|++..+.|++ |+|+|+++.++.++...++++ .+.+++..|++++|||+||++|++..+|+++......+ ... ++++
T Consensus 1 L~~~~~~~l~-dll~s~l~~l~~~~~~~l~~~-~~~~~~~~~r~aLkmy~yLl~~l~~~~e~~~~~~~~~~~~~~~~~~~ 78 (171)
T PF12922_consen 1 LSPSLKNQLL-DLLCSSLSNLSDSIQSLLESS-DDEDSRASHRNALKMYGYLLHWLLEALEKEASAKSSKSASKKSGKGK 78 (171)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCC
Confidence 6889999999 999999999999999999886 57888999999999999999999999996532111111 111 1111
Q ss_pred hhhhhhhhhhcccccCcchHhHHHHHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHH
Q psy8182 150 KVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIF 229 (827)
Q Consensus 150 k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if 229 (827)
+++++ .++.+.+.|+|+++|+++|.+|.++|++||++||+|+++||+||+||+||||++||+|+++ |++++|+++|
T Consensus 79 ~~~~~--~~~~~~~~~~w~~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~--K~~~ik~~if 154 (171)
T PF12922_consen 79 KKKKK--KKKKKEESWDWESQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIV--KNKSIKDAIF 154 (171)
T ss_pred CCCCC--CCCccccCCCcHHHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhh--ccHHHHHHHH
Confidence 11111 1234567899999999999999999999999999999999999999999999999999875 9999999999
Q ss_pred HHHHHHHHHhccccchh
Q psy8182 230 QIVGYLIKRYNHGISCT 246 (827)
Q Consensus 230 ~il~~~vk~~~~~~~~~ 246 (827)
+|||++||+|||+.++|
T Consensus 155 ~il~~~vk~h~h~~~~q 171 (171)
T PF12922_consen 155 RILGTAVKKHNHALSAQ 171 (171)
T ss_pred HHHHHHHHHcccccccC
Confidence 99999999999999875
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.86 E-value=8.7e-06 Score=95.56 Aligned_cols=475 Identities=15% Similarity=0.174 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHH
Q psy8182 262 PLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNC 341 (827)
Q Consensus 262 ~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~a 341 (827)
.+..++......+|.+.+..++++-++ ++|-..-|=.-.|+..++...|.+++=-++.+.+-|.+++..+|+.
T Consensus 26 ~l~kli~~~~~G~~~~~~~~~vi~l~~-------s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~l 98 (526)
T PF01602_consen 26 ALKKLIYLMMLGYDISFLFMEVIKLIS-------SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGL 98 (526)
T ss_dssp HHHHHHHHHHTT---GSTHHHHHCTCS-------SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHH
Confidence 455666666666777777666666543 2566677777888999999999988778999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHH-HHHHHHhhcCC
Q psy8182 342 TLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLK-LLERAIGRLMD 420 (827)
Q Consensus 342 vle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~-v~~~av~RL~D 420 (827)
.+.+++++... +..+.++..+..-+.|.+||||.+|+-++.++.... |-. ... +.......|.|
T Consensus 99 AL~~l~~i~~~------------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~--p~~-~~~~~~~~l~~lL~d 163 (526)
T PF01602_consen 99 ALRTLSNIRTP------------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD--PDL-VEDELIPKLKQLLSD 163 (526)
T ss_dssp HHHHHHHH-SH------------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--HCC-HHGGHHHHHHHHTTH
T ss_pred HHhhhhhhccc------------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--HHH-HHHHHHHHHhhhccC
Confidence 99999998732 355778888888888999999999999999999852 221 112 67777888899
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCC-CChhHHHHhhhhh-hh----hhhhHhhhhhhcCCCCchhh--hhhhhhHHHhhh
Q psy8182 421 KSSNVVKYTVQLLKTMIESNPFAAK-ATTQYYVQAELTL-EE----FNERIKDCFEALDNDGPMFI--LENFDTLYSMLT 492 (827)
Q Consensus 421 KSs~VRk~Ai~Ll~~ll~~nPf~~~-L~~~~~v~ev~~l-~e----i~~~L~e~~~Al~~e~~~~i--~e~FD~lySll~ 492 (827)
++..|+.+|+.++..+ ..+|-... +.. .+.+..... .. +...+-.+...+.+..+... ...++.+..++.
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~ 241 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLIP-KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ 241 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHHH-HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhHH-HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh
Confidence 9999999999999998 44442111 111 111111100 11 11111122222223222222 223333333332
Q ss_pred ccccccHHHHHHHHHHHHHH------HHHHHHHhHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy8182 493 HFKSIEYKILHNVYTKLLLR------SLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHK 566 (827)
Q Consensus 493 ~~~~l~~~~~~~l~~~~l~~------~~s~l~~~l~~~~~~~~~~~~~~~~~~~~lkm~~fLl~~~~~~~e~~~~~~~~~ 566 (827)
+-++.+..... ..+.. ........+..++.+. +.. ++ |+....+...-... .+
T Consensus 242 ---s~~~~V~~e~~-~~i~~l~~~~~~~~~~~~~L~~lL~s~--~~n--------vr---~~~L~~L~~l~~~~----~~ 300 (526)
T PF01602_consen 242 ---SSSPSVVYEAI-RLIIKLSPSPELLQKAINPLIKLLSSS--DPN--------VR---YIALDSLSQLAQSN----PP 300 (526)
T ss_dssp ---HHHHHHHHHHH-HHHHHHSSSHHHHHHHHHHHHHHHTSS--SHH--------HH---HHHHHHHHHHCCHC----HH
T ss_pred ---ccccHHHHHHH-HHHHHhhcchHHHHhhHHHHHHHhhcc--cch--------he---hhHHHHHHHhhccc----ch
Confidence 11222222222 22211 0111111111122111 100 11 11111111110000 00
Q ss_pred hhhhhhhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHHhccccccccCCChhhHHHHHHHHHHHHHHh-ccccccccc
Q psy8182 567 IVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKII-EDPCIASVK 645 (827)
Q Consensus 567 ~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~y~lL-E~~~~~~~K 645 (827)
.. . ...-.- ...... +=..=|.++|+.+..+..-. .+-. +..-....+ +. .
T Consensus 301 ~v---~--~~~~~~--~~l~~~--~d~~Ir~~~l~lL~~l~~~~------------n~~~-Il~eL~~~l~~~------~ 352 (526)
T PF01602_consen 301 AV---F--NQSLIL--FFLLYD--DDPSIRKKALDLLYKLANES------------NVKE-ILDELLKYLSEL------S 352 (526)
T ss_dssp HH---G--THHHHH--HHHHCS--SSHHHHHHHHHHHHHH--HH------------HHHH-HHHHHHHHHHHC-------
T ss_pred hh---h--hhhhhh--heecCC--CChhHHHHHHHHHhhccccc------------chhh-HHHHHHHHHHhc------c
Confidence 00 0 000000 000000 11244778888888887621 1111 222222222 22 2
Q ss_pred hHHHHHHHHHHHHHHHHhhCcc-hhhHHHHHHHHhh-hcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCC
Q psy8182 646 HKELRVFIFQIVGYLIKRYNHG-ISCTVKIVQLLKN-CEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAG 723 (827)
Q Consensus 646 ~~~ir~~if~il~~~vk~y~h~-~~~~~~IiqlL~~-~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~D 723 (827)
...++..+.+.+|.++.+|.-. ..+-..+++++.. -++...-....+..+..+ ++++-+.++..+.+.-.. ..+
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~--~~~~~~~~l~~L~~~l~~--~~~ 428 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSN--NPELREKILKKLIELLED--ISS 428 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH--STTTHHHHHHHHHHHHTS--SSS
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhc--ChhhhHHHHHHHHHHHHH--hhH
Confidence 4568888888898888888443 4466777788874 366666666666666655 455566777777765433 355
Q ss_pred CcchhHHHHHHHHHHHHhHH--HHHhhHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Q psy8182 724 QDSSKMIAAFLNEVAAHGAE--YVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLD 801 (827)
Q Consensus 724 s~g~K~~s~FL~~Lae~~P~--lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ii~~~l~~~~~~e~~k~~rd~~ld~L~e 801 (827)
+..-+.+.=.+-|.++..|. .....+..+++.+-.|+..+|+.+++++..+... .+ ..+ .++.+++.+..
T Consensus 429 ~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~---~~-~~~----~~~~i~~~~~~ 500 (526)
T PF01602_consen 429 PEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKR---NP-ENE----VQNEILQFLLS 500 (526)
T ss_dssp HHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH---SC-STT----HHHHHHHHHHC
T ss_pred HHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh---CC-chh----hHHHHHHHHHH
Confidence 56678888888999999998 8888899999999999999999999999999853 11 111 12244444444
Q ss_pred hcC--cCChhhhhHHHHHHHHh
Q psy8182 802 HMH--DVHTFVRTKVSTEKKLE 821 (827)
Q Consensus 802 r~~--D~nayVRsKvlq~~~~l 821 (827)
=.. |.|+=||-||...|.-+
T Consensus 501 ~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 501 LATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHS-SSHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHH
Confidence 444 77999999998777543
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=98.71 E-value=0.00021 Score=86.99 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=117.6
Q ss_pred HHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy8182 271 IRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELL 350 (827)
Q Consensus 271 ~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii 350 (827)
...+|.+.+..+|++-++ ++|-.--|=+-.|+..+++..|.+.+=-++.|.+-+.+++-.+|..-+-+|+.|-
T Consensus 61 t~G~DvS~LF~dVvk~~~-------S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir 133 (746)
T PTZ00429 61 TMGRDVSYLFVDVVKLAP-------STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR 133 (746)
T ss_pred HCCCCchHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC
Confidence 334566777778887542 3577778888999999999999998889999999999999999999999999876
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHhhcCCCChHHHHH
Q psy8182 351 INVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK--AIPVAFTLKLLERAIGRLMDKSSNVVKY 428 (827)
Q Consensus 351 ~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~--~iP~~~~~~v~~~av~RL~DKSs~VRk~ 428 (827)
.. ...+.+...+..-+.|.+||||.+|.-+..+|.... .++... +......-|.|+++.|.-|
T Consensus 134 ~~------------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~---~~~~L~~LL~D~dp~Vv~n 198 (746)
T PTZ00429 134 VS------------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQD---FKKDLVELLNDNNPVVASN 198 (746)
T ss_pred cH------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccc---hHHHHHHHhcCCCccHHHH
Confidence 53 244566677777788999999999999999998743 233222 2223333489999999999
Q ss_pred HHHHHHHHHhhCC
Q psy8182 429 TVQLLKTMIESNP 441 (827)
Q Consensus 429 Ai~Ll~~ll~~nP 441 (827)
|+.+|..+-..+|
T Consensus 199 Al~aL~eI~~~~~ 211 (746)
T PTZ00429 199 AAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999988776
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.02 E-value=0.0097 Score=69.92 Aligned_cols=415 Identities=15% Similarity=0.153 Sum_probs=216.7
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCC
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIP 403 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP 403 (827)
...+++++.++++.+|.-+- +....+..++ +| ..--..+.|..-+.+.|+|+|+-||+++..++..
T Consensus 44 ~~~vi~l~~s~~~~~Krl~y-----l~l~~~~~~~-~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---- 109 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGY-----LYLSLYLHED-PE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP---- 109 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHH-----HHHHHHTTTS-HH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----
T ss_pred HHHHHHHhCCCCHHHHHHHH-----HHHHHHhhcc-hh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc----
Confidence 44667777888888876443 4333333332 11 2223455566667899999999999999999843
Q ss_pred hHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhh-hhhh-hhHhhhh---hhc-CCCCc
Q psy8182 404 VAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTL-EEFN-ERIKDCF---EAL-DNDGP 477 (827)
Q Consensus 404 ~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l-~ei~-~~L~e~~---~Al-~~e~~ 477 (827)
.....+......-|.|+++.|||+|+--+.++....|= .+... |.+....+ .+-+ .....+. ..+ .++..
T Consensus 110 -~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 110 -EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp -HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred -chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcch
Confidence 45567888888889999999999999999999998772 22222 42222222 1111 1111111 111 11111
Q ss_pred hhhhhhhhhHHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCHHHH--HHHH--------HHHHHHH
Q psy8182 478 MFILENFDTLYSMLTHF-KSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQ--EKYL--------NVVKMTL 546 (827)
Q Consensus 478 ~~i~e~FD~lySll~~~-~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~~~~~~~~~--~~~~--------~~lkm~~ 546 (827)
....+..++..+... +..++-.+.+++ .++.. +. ....... .... +.-.+..
T Consensus 186 --~~~~~~~~~~~L~~~l~~~~~~~q~~il-~~l~~-----------~~---~~~~~~~~~~~~i~~l~~~l~s~~~~V~ 248 (526)
T PF01602_consen 186 --YKSLIPKLIRILCQLLSDPDPWLQIKIL-RLLRR-----------YA---PMEPEDADKNRIIEPLLNLLQSSSPSVV 248 (526)
T ss_dssp --HTTHHHHHHHHHHHHHTCCSHHHHHHHH-HHHTT-----------ST---SSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHhhhcccccchHHHHHHH-HHHHh-----------cc---cCChhhhhHHHHHHHHHHHhhccccHHH
Confidence 012233333333322 444455555555 44421 00 0111111 0011 1111122
Q ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHHhccccccccCCChhhHHHHH
Q psy8182 547 WVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVN 626 (827)
Q Consensus 547 fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~ 626 (827)
|=...++....... .. ..+.-..=. ...... + .+-|--+|+++..+.+.. ..++.
T Consensus 249 ~e~~~~i~~l~~~~------~~-~~~~~~~L~----~lL~s~--~-~nvr~~~L~~L~~l~~~~-----------~~~v~ 303 (526)
T PF01602_consen 249 YEAIRLIIKLSPSP------EL-LQKAINPLI----KLLSSS--D-PNVRYIALDSLSQLAQSN-----------PPAVF 303 (526)
T ss_dssp HHHHHHHHHHSSSH------HH-HHHHHHHHH----HHHTSS--S-HHHHHHHHHHHHHHCCHC-----------HHHHG
T ss_pred HHHHHHHHHhhcch------HH-HHhhHHHHH----HHhhcc--c-chhehhHHHHHHHhhccc-----------chhhh
Confidence 22222222111000 00 000000000 000000 0 123445667766666643 12222
Q ss_pred HHHHHHHHHhc-cccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHH-HHhhh-c----ccchHHHHHHHHHHHhc
Q psy8182 627 MVANCCYKIIE-DPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQ-LLKNC-E----HLVSPLAQAVVMFIRNH 699 (827)
Q Consensus 627 l~~~~~y~lLE-~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~Iiq-lL~~~-E----hl~~~~Ae~v~~l~~~~ 699 (827)
........+. ++ +..+|....+++..++..-| +. .|++ +++|. + +.....+..+..+++.|
T Consensus 304 -~~~~~~~~l~~~~------d~~Ir~~~l~lL~~l~~~~n----~~-~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 304 -NQSLILFFLLYDD------DPSIRKKALDLLYKLANESN----VK-EILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp -THHHHHHHHHCSS------SHHHHHHHHHHHHHH--HHH----HH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhheecCCC------ChhHHHHHHHHHhhcccccc----hh-hHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 2333333443 22 36688888888887775422 22 2443 33333 1 23345556667777776
Q ss_pred CCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCC-CChhHHhHHHHHHHHHHHHh
Q psy8182 700 GCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEK-ESYLMRNCTLTIVTELLINV 778 (827)
Q Consensus 700 ~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~-Esy~lR~aVlev~g~ii~~~ 778 (827)
. .-.+..+.-+-+.-.. +.+ .-...+...+..+....|..--.-+..|..++++ ++-.++.+++=++|+-....
T Consensus 372 ~--~~~~~~v~~l~~ll~~--~~~-~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 372 P--PDAEWYVDTLLKLLEI--SGD-YVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp G--SSHHHHHHHHHHHHHC--TGG-GCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred C--chHHHHHHHHHHhhhh--ccc-cccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 2 2222233222222111 133 3455566667777788888877777777877764 66678888888888865432
Q ss_pred hccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHhhc
Q psy8182 779 YKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECW 823 (827)
Q Consensus 779 l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~lc~ 823 (827)
-. .. ....++..+.+++.+.++-||..+++.+.|+-.
T Consensus 447 ~~-------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 447 EN-------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFK 483 (526)
T ss_dssp TT-------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred cc-------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 22 12 667899999999999999999999999999854
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=97.63 E-value=0.35 Score=59.44 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHH
Q psy8182 328 LLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFT 407 (827)
Q Consensus 328 ~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~ 407 (827)
++.+.++.+.+|.-|--.+.+. .. ...|..- -..+.|..=+.|-|+++|+-||+++..|... ...
T Consensus 74 vk~~~S~d~elKKLvYLYL~~y-----a~-~~pelal----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~ 138 (746)
T PTZ00429 74 VKLAPSTDLELKKLVYLYVLST-----AR-LQPEKAL----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL 138 (746)
T ss_pred HHHhCCCCHHHHHHHHHHHHHH-----cc-cChHHHH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH
Confidence 3455667777776655444433 11 1111112 2244455566789999999999997776553 233
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 408 LKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 408 ~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
..+......-|.|+++.|||+|+--+.++...+|
T Consensus 139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 4566666777899999999999999999988888
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.31 E-value=0.0016 Score=65.93 Aligned_cols=94 Identities=22% Similarity=0.399 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q psy8182 336 YLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAI 415 (827)
Q Consensus 336 y~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av 415 (827)
-.+||.++-++|.+.... ....|.+++.|..++.|.+++||..|+.++++|..++.+.. +..++....
T Consensus 2 ~~vR~n~i~~l~DL~~r~----------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l 69 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY----------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV--KGQLFSRIL 69 (178)
T ss_pred HHHHHHHHHHHHHHHHhC----------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee--hhhhhHHHH
Confidence 368999999999999864 23678899999999999999999999999999999987664 345555555
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhh-CC
Q psy8182 416 GRLMDKSSNVVKYTVQLLKTMIES-NP 441 (827)
Q Consensus 416 ~RL~DKSs~VRk~Ai~Ll~~ll~~-nP 441 (827)
..|.|.+..||..|..++..+... +|
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999999887 44
No 12
>KOG1020|consensus
Probab=97.22 E-value=0.071 Score=67.48 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 367 RDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 367 rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
=|.++.++.-=..--.+-+|+|||+++..+++-..+-+.+ ..|...+.||+.|-|+.||-+|+-|+++++..||
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~-~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR-PDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC-HHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 3777777776666556789999999999999976544444 7899999999999999999999999999999888
No 13
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.87 E-value=0.023 Score=59.46 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=68.3
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChH
Q psy8182 326 ELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVA 405 (827)
Q Consensus 326 ~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~ 405 (827)
.+...+.+..-.+-...+++++.+.... . ......-+.++..|.+++-|.+.++|..|-+++..+++.-.. .
T Consensus 57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~-----~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~- 128 (228)
T PF12348_consen 57 AIIKQLSDLRSKVSKTACQLLSDLARQL-G-----SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-S- 128 (228)
T ss_dssp HHHH-S-HH---HHHHHHHHHHHHHHHH-G-----GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-h-----HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-H-
Confidence 3444444443444444455666555432 2 224556799999999999999999999999999999997331 1
Q ss_pred HHHHH-HHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 406 FTLKL-LERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 406 ~~~~v-~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
..+ ......-+.+|++.||..+++++..++..+|
T Consensus 129 --~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 129 --PKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp ---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 233 5666667899999999999999999999998
No 14
>KOG1020|consensus
Probab=96.76 E-value=3.1 Score=53.57 Aligned_cols=128 Identities=20% Similarity=0.360 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccc
Q psy8182 302 SKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDV 381 (827)
Q Consensus 302 ~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~ 381 (827)
.+-+..||..-.+.. ..+=+-+.+++..|+...-.+|.-.+-|+..|+... ..--.|-.+..-..-|++|.
T Consensus 797 a~li~~~la~~r~f~-~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D--------p~vL~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFS-QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD--------PSVLSRPDVQEAVHGRLNDS 867 (1692)
T ss_pred HHHHHHHHHhhhHHH-HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC--------hHhhcCHHHHHHHHHhhccc
Confidence 344444444433332 344566788889999999999999999999888752 11112233344455566666
Q ss_pred chhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 382 HTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 382 n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
++=||=.|+-+..+-+-.. | ....+.....+.|+.|-+..|||.||+.+..+=+.+|
T Consensus 868 sasVREAaldLvGrfvl~~--~-e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSI--P-ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hhHHHHHHHHHHhhhhhcc--H-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 6666666666666554421 2 2223444555556666666666666666666655555
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.42 E-value=0.049 Score=56.94 Aligned_cols=134 Identities=15% Similarity=0.187 Sum_probs=96.0
Q ss_pred CchhhhHHHHHHHHHHHHhHHHHHhhHHH----HHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy8182 298 GQDSSKMIAAFLNEVAAHGAEYVIPAMEE----LLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNV 373 (827)
Q Consensus 298 D~~g~k~~s~FL~~Lae~~P~l~l~~is~----l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~ 373 (827)
-++-.|+...++..|+...+.-+-+.+.. |++.+.+..-.+|.+..+++..|+...-- ...-++..
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~----------~~~~~~~~ 135 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY----------SPKILLEI 135 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc----------HHHHHHHH
Confidence 46677888888888888887776555544 44556788899999999999999875320 11334888
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhCCC-----CChH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 374 LLDHMHDVHTFVRTKVLQLFQRLVLDKA-----IPVA-FTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 374 L~er~~D~n~~vRskvLq~~~~L~~~~~-----iP~~-~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
+.....+.|+-+|..+++.+..+++... +... ....+.+....-|.|.++-||++|-+.+..+....|
T Consensus 136 l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 136 LSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999988644 1111 135789999999999999999999999999977766
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.01 E-value=0.043 Score=50.30 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=84.0
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQ-RDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI 402 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~-rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~i 402 (827)
+..|.++|...+..+|...+.+++++.... ++..... +.+.++.|.+-+.|.++-+|..++.++..|+....-
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGN------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCC------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 456777888888899999999999987531 1222222 348888888888999999999999999999997532
Q ss_pred ChHH-H-HHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q psy8182 403 PVAF-T-LKLLERAIGRLMDKSSNVVKYTVQLLKTMI 437 (827)
Q Consensus 403 P~~~-~-~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll 437 (827)
.... . .+++...++.|.|.+..||+.|+.+|..+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1121 2 357999999999999999999999998764
No 17
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.15 Score=62.01 Aligned_cols=152 Identities=14% Similarity=0.218 Sum_probs=121.8
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHH
Q psy8182 265 QAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLT 344 (827)
Q Consensus 265 e~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle 344 (827)
..+..|....|.+.|..+|+|.+. ++|..--|=+-.+|...|+.-|..++-.+..+++=|..++-.+|++.+-
T Consensus 42 ~iIa~M~~G~dmssLf~dViK~~~-------trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR 114 (757)
T COG5096 42 KIIAQMSLGEDMSSLFPDVIKNVA-------TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALR 114 (757)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 345555555667788889999885 2677788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHH--HHHHHHhhcCCCC
Q psy8182 345 IVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLK--LLERAIGRLMDKS 422 (827)
Q Consensus 345 ~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~--v~~~av~RL~DKS 422 (827)
.+|.|=. ++-.+.+++.+.+.+.|-|||||-.|.=++.+|.+.+ ....+. ....-..-+.|-+
T Consensus 115 ~ls~l~~------------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~d 179 (757)
T COG5096 115 TLSLLRV------------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSD 179 (757)
T ss_pred HHHhcCh------------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCC
Confidence 9995533 2456889999999999999999999999999999853 222222 3334444467999
Q ss_pred hHHHHHHHHHHHHHHh
Q psy8182 423 SNVVKYTVQLLKTMIE 438 (827)
Q Consensus 423 s~VRk~Ai~Ll~~ll~ 438 (827)
+.|-+||+.-|..+=.
T Consensus 180 P~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 180 PIVIANALASLAEIDP 195 (757)
T ss_pred chHHHHHHHHHHHhch
Confidence 9999999877765433
No 18
>KOG1060|consensus
Probab=95.63 E-value=0.097 Score=62.52 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=112.0
Q ss_pred CCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q psy8182 275 GCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVY 354 (827)
Q Consensus 275 ~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~ 354 (827)
|.+.+..+|++-++. +++.--|=+-.+|+..||..|++-+=.|+.+.+-|...+.-+|+.-+-+|..|=....
T Consensus 68 dvS~~Fp~VVKNVas-------kn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~I 140 (968)
T KOG1060|consen 68 DVSLLFPAVVKNVAS-------KNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMI 140 (968)
T ss_pred cHHHHHHHHHHHhhc-------cCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhH
Confidence 333445556666643 5666788999999999999999999999999999999999999999999987654432
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 355 KREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 355 ~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
- --++-.+.+=..|.++|||--|-.++.+|-..+ | ....++.++.--=|.|+|+.|-.+|+--..
T Consensus 141 a------------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~ 205 (968)
T KOG1060|consen 141 A------------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFE 205 (968)
T ss_pred H------------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 2 234555677789999999999999999999875 4 334688888889999999999999987665
No 19
>KOG1525|consensus
Probab=95.53 E-value=5 Score=51.99 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=108.6
Q ss_pred CCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q psy8182 297 AGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLD 376 (827)
Q Consensus 297 ~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~e 376 (827)
+-++-...+-..+-+|-.-.|.+++.-+..|..-|-+|.-..|--+++.+|.|+.... .... .+=+.++..-+-
T Consensus 234 ~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~--~~l~----~~~~~~~~~fl~ 307 (1266)
T KOG1525|consen 234 RQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD--SQLS----ETYDDLWSAFLG 307 (1266)
T ss_pred cccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch--hhhc----ccchHHHHHHHH
Confidence 4455667788899999999999999999999888999999999999999999997532 1112 234666777778
Q ss_pred hhcccchhHHHHHHHHHH-----------------HHHhCC--------------CCC-----hHHHHHHHHHHHhhcCC
Q psy8182 377 HMHDVHTFVRTKVLQLFQ-----------------RLVLDK--------------AIP-----VAFTLKLLERAIGRLMD 420 (827)
Q Consensus 377 r~~D~n~~vRskvLq~~~-----------------~L~~~~--------------~iP-----~~~~~~v~~~av~RL~D 420 (827)
|+.|.++=||-+.+|.-. .|++.. ..+ +.....++..+..|+.|
T Consensus 308 r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD 387 (1266)
T KOG1525|consen 308 RFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD 387 (1266)
T ss_pred HhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh
Confidence 889999988876665543 333211 111 11123488899999999
Q ss_pred CChHHHHHHHHHHHHHHhh----CCCCCCCCh
Q psy8182 421 KSSNVVKYTVQLLKTMIES----NPFAAKATT 448 (827)
Q Consensus 421 KSs~VRk~Ai~Ll~~ll~~----nPf~~~L~~ 448 (827)
|--.||+.||+=|+.+-.+ .+.|++.-.
T Consensus 388 Kk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t 419 (1266)
T KOG1525|consen 388 KKIKVRKQAMNGLAQLYKNVYCLRSAGGKEIT 419 (1266)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 9999999999999998775 566665443
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.41 E-value=0.081 Score=46.28 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=63.3
Q ss_pred HHHHHHhh-cCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC
Q psy8182 324 MEELLLNL-EKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI 402 (827)
Q Consensus 324 is~l~~~L-d~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~i 402 (827)
+..|++.| ++++..+|-.++.++|++= ....+..|.+.+.|-++.||..|+..+.++=+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 35678888 7888999999999999221 12557777777799999999999999998733
Q ss_pred ChHHHHHHHHHHHhhcCC-CChHHHHHHHHHHH
Q psy8182 403 PVAFTLKLLERAIGRLMD-KSSNVVKYTVQLLK 434 (827)
Q Consensus 403 P~~~~~~v~~~av~RL~D-KSs~VRk~Ai~Ll~ 434 (827)
.+........+.| .+..||..|++-|+
T Consensus 61 -----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2334444445544 66788999988663
No 21
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.26 E-value=0.11 Score=63.15 Aligned_cols=116 Identities=13% Similarity=0.252 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhH
Q psy8182 687 PLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNC 766 (827)
Q Consensus 687 ~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~a 766 (827)
.|=..++.|....|.+.+.-+|+|.+. ++|..--|=+=-+|...|+.-|..++-.+..+++-|..++=.+|++
T Consensus 39 AmK~iIa~M~~G~dmssLf~dViK~~~-------trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~ 111 (757)
T COG5096 39 AMKKIIAQMSLGEDMSSLFPDVIKNVA-------TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGF 111 (757)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 344556677777888899999999988 3777788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHh
Q psy8182 767 TLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLE 821 (827)
Q Consensus 767 Vlev~g~ii~~~l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~l 821 (827)
.+..+|-|=.. +-.+.+++.+.+++.|-|||||-.|.=...++
T Consensus 112 AlR~ls~l~~~------------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kl 154 (757)
T COG5096 112 ALRTLSLLRVK------------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKL 154 (757)
T ss_pred HHHHHHhcChH------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 99999876443 44578999999999999999999988777665
No 22
>KOG1241|consensus
Probab=95.13 E-value=11 Score=45.79 Aligned_cols=155 Identities=13% Similarity=0.184 Sum_probs=117.3
Q ss_pred chHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHH-hhcCCCchHHHHHHHHHHHHHHHHhhc
Q psy8182 278 SLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLL-NLEKESYLMRNCTLTIVTELLINVYKR 356 (827)
Q Consensus 278 ~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~-~Ld~esy~lR~avle~~g~ii~~~~~~ 356 (827)
.++..+|.-+...+.++.-.|=+..|+-+.=|.=+|+.+-+.|.+++=-++. ++.++++.=|-|-+-++|-++..
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g---- 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEG---- 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC----
Confidence 5777788888877777766777889999999999999999999987655555 79999999999999999987753
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy8182 357 EDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD---KAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLL 433 (827)
Q Consensus 357 ~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~---~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll 433 (827)
.+ .+..+..-.+.+.-++.=+.|.+-+||..+=.++.++++- .++|..+.+.++..-+.-|.|- +-|--|+---+
T Consensus 395 p~-~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf 472 (859)
T KOG1241|consen 395 PE-PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAF 472 (859)
T ss_pred Cc-hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHH
Confidence 21 1122334466667777777799999999999999999994 4788888888888888888886 34444443333
Q ss_pred HHHHh
Q psy8182 434 KTMIE 438 (827)
Q Consensus 434 ~~ll~ 438 (827)
..|.+
T Consensus 473 ~~Lae 477 (859)
T KOG1241|consen 473 ISLAE 477 (859)
T ss_pred HHHHH
Confidence 34333
No 23
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.13 E-value=0.61 Score=54.37 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=97.6
Q ss_pred CchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q psy8182 277 KSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKR 356 (827)
Q Consensus 277 ~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~ 356 (827)
+.+++.||+-+...-..++.+|+.|. ++|-+-+-.++..+++.--++|.-++++++-++-- .+.
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~---------------~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~e 124 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGE---------------ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV-VRE 124 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhh---------------HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cch
Confidence 44555555555443333444566653 34555566788899999999999999999965532 221
Q ss_pred CCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 357 EDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 357 ~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
= -..--+.+++.|.+|+.|--+-||--|+.++.++.+...=|..+...++...++ .|-|+-|||.|+--+.
T Consensus 125 I-----De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vq--nDPS~EVRr~allni~ 195 (885)
T COG5218 125 I-----DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQ--NDPSDEVRRLALLNIS 195 (885)
T ss_pred H-----HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--cCcHHHHHHHHHHHee
Confidence 0 123458899999999999999999999999999999777777776555555554 7999999999976554
No 24
>KOG1248|consensus
Probab=94.08 E-value=24 Score=45.02 Aligned_cols=247 Identities=15% Similarity=0.165 Sum_probs=156.6
Q ss_pred HHHHhcchhhcccC-----CCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHh---ccccc-----
Q psy8182 178 IHQILKSKINKLWD-----PPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRY---NHGIS----- 244 (827)
Q Consensus 178 l~~~L~l~l~~lw~-----~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~---~~~~~----- 244 (827)
+++.|+-.|+.|.+ |.-.++.|-.++--.+--++++| .+|..|++-|-+++..- .++-.
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~--------elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~ 561 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP--------ELRETICNSLRMLVEQNKPSSDAAENKEVL 561 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch--------HhHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 45555555555543 45567889888888888777554 77888888888888763 12111
Q ss_pred ---hhhhHHHHhhhccccc--H-HHH-----HHHHHHHH--hhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHH
Q psy8182 245 ---CTVKIVQLLKNCEHLV--S-PLA-----QAVVMFIR--NHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNE 311 (827)
Q Consensus 245 ---~~~~IiqlL~~~ehl~--~-~~A-----e~v~~l~~--~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~ 311 (827)
+.+-+--+..+|.--+ . +.. .+.....+ .-.+..++..+..-++.+... ..++..+.-...+|-.
T Consensus 562 s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~--~~~s~~~~~~~slLdl 639 (1176)
T KOG1248|consen 562 SNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASD--LDESVASFKTLSLLDL 639 (1176)
T ss_pred hhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhcc--chhhhhhHHHHHHHHH
Confidence 1122222333333222 1 111 11111111 113345666666666665543 3466677777888888
Q ss_pred HHHHhHHHHHhhHHHHH---HhhcCC-CchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHH
Q psy8182 312 VAAHGAEYVIPAMEELL---LNLEKE-SYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRT 387 (827)
Q Consensus 312 Lae~~P~l~l~~is~l~---~~Ld~e-sy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRs 387 (827)
+....|..--.+++.+. +.+++. +-.++.=.-.++++++.. ....--..+-.+.+++.|.+=+.++..++|.
T Consensus 640 ~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~----~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 640 LIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS----PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 88888877766666554 444543 666777667777776654 1111112345688999999999999999999
Q ss_pred HHHHHHHHHHhCCC-CChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q psy8182 388 KVLQLFQRLVLDKA-IPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIE 438 (827)
Q Consensus 388 kvLq~~~~L~~~~~-iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~ 438 (827)
..+.+|..|.+... --..+..+.+..++=.+.|-+.--|++|-++|..+..
T Consensus 716 ~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 99999999999532 3334445666666667799999999999999998875
No 25
>KOG1061|consensus
Probab=93.70 E-value=22 Score=43.35 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=120.7
Q ss_pred hCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q psy8182 274 HGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINV 353 (827)
Q Consensus 274 ~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~ 353 (827)
.|.+.|..++++-.+ ..|-.--|=+-.++..-|..-|..-+--+..++.=...++..+|.+-+..+|.+=..
T Consensus 45 ~DvSslF~dvvk~~~-------T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~- 116 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQ-------TRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD- 116 (734)
T ss_pred cchHhhhHHHHhhcc-------cCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-
Confidence 456677777777532 246566788889999999999999998999999999999999999999998855432
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy8182 354 YKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK---AIPVAFTLKLLERAIGRLMDKSSNVVKYTV 430 (827)
Q Consensus 354 ~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~---~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai 430 (827)
+-.+.+++-|.....|-+||||..|--...++-..+ +.+ .++...--+=+.|-++.|-=||+
T Consensus 117 -----------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~----~gl~~~L~~ll~D~~p~VVAnAl 181 (734)
T KOG1061|consen 117 -----------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED----SGLVDALKDLLSDSNPMVVANAL 181 (734)
T ss_pred -----------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc----cchhHHHHHHhcCCCchHHHHHH
Confidence 345788999999999999999999999988887753 223 33444444445599999999999
Q ss_pred HHHHHHHhhCC--CCCCCChhHH
Q psy8182 431 QLLKTMIESNP--FAAKATTQYY 451 (827)
Q Consensus 431 ~Ll~~ll~~nP--f~~~L~~~~~ 451 (827)
..|.-+.+.|| ....|+....
T Consensus 182 aaL~eI~e~~~~~~~~~l~~~~~ 204 (734)
T KOG1061|consen 182 AALSEIHESHPSVNLLELNPQLI 204 (734)
T ss_pred HHHHHHHHhCCCCCcccccHHHH
Confidence 99999999999 3344444433
No 26
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=93.56 E-value=20 Score=42.47 Aligned_cols=164 Identities=14% Similarity=0.107 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHHh---hCcchhh--------------HHHHHH-H---HhhhcccchHHHHHHHHHHHhcCCcch
Q psy8182 646 HKELRVFIFQIVGYLIKR---YNHGISC--------------TVKIVQ-L---LKNCEHLVSPLAQAVVMFIRNHGCKSL 704 (827)
Q Consensus 646 ~~~ir~~if~il~~~vk~---y~h~~~~--------------~~~Iiq-l---L~~~Ehl~~~~Ae~v~~l~~~~~~~~l 704 (827)
+..+|..|+.+||-.+.. +.+...+ ...-+| . ..-+.|.++.+++.+.-.....+-+.+
T Consensus 296 ~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI 375 (501)
T ss_pred CHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc
Confidence 567888888888766443 3333211 111112 1 234455555555544444444333333
Q ss_pred HHHHHHHHhcccCCCccCCCcchhHHH-HHHHHHHHHhHHHHHhhHHHHHhh---hCCCChhHHhHHHHHHHHHHHHhhc
Q psy8182 705 VREIVREISAMEDGNENAGQDSSKMIA-AFLNEVAAHGAEYVIPAMEELLLN---LEKESYLMRNCTLTIVTELLINVYK 780 (827)
Q Consensus 705 ~~eilreI~~~~~~d~~~Ds~g~K~~s-~FL~~Lae~~P~lvl~~~s~L~~~---Ld~Esy~lR~aVlev~g~ii~~~l~ 780 (827)
.. +....+ ..+...-|+.+ +=|-.|+.+.|.++.+.++++..+ |++|.=.+|-++-++++.|....-.
T Consensus 376 ~~------~~~~~~--~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 376 QD------SSSQSN--SSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred cc------ccccCC--CcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 00 111112 23444444443 568889999999999999988877 6789999999999999999986655
Q ss_pred cCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHH
Q psy8182 781 REDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKK 819 (827)
Q Consensus 781 ~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~ 819 (827)
..+ +.....+..+..++.+...+....||--|++-.-
T Consensus 448 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an 484 (501)
T PF13001_consen 448 LPD--DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN 484 (501)
T ss_pred ccc--chhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 443 2334556667778888888999999998887543
No 27
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.53 E-value=0.45 Score=43.09 Aligned_cols=72 Identities=26% Similarity=0.342 Sum_probs=65.3
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 370 YLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 370 ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
-|+...+-+.|--+-||+++|..+.+|++.+..|......++.+...-|+|.-+.|==|||+.|+.|...+|
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 355566677899999999999999999998887777789999999999999999999999999999999998
No 28
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.23 E-value=0.11 Score=40.04 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHH
Q psy8182 408 LKLLERAIGRLMDKSSNVVKYTVQLL 433 (827)
Q Consensus 408 ~~v~~~av~RL~DKSs~VRk~Ai~Ll 433 (827)
..+.....+||.|.|+.||++|++||
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 58899999999999999999999985
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.05 E-value=9.9 Score=45.03 Aligned_cols=198 Identities=12% Similarity=0.137 Sum_probs=119.9
Q ss_pred cHHHHHHHHHHHHHHHHHhccccc------hhhhHHHHhhhcccccH-HHHHHHHHHHHh-hCC-----CchHHHHHHHH
Q psy8182 221 HKELRVFIFQIVGYLIKRYNHGIS------CTVKIVQLLKNCEHLVS-PLAQAVVMFIRN-HGC-----KSLVREIVREI 287 (827)
Q Consensus 221 ~~~~r~~if~il~~~vk~~~~~~~------~~~~IiqlL~~~ehl~~-~~Ae~v~~l~~~-~~~-----~~l~~~ilreI 287 (827)
+..+|-.++.+++.+.+....... +-..++..|..-|-|.. -..|++..+++. +|. .+++..|...+
T Consensus 173 ~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l 252 (503)
T PF10508_consen 173 SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLL 252 (503)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHH
Confidence 456777888887777655332222 22345555666555553 344666666652 121 24555555555
Q ss_pred hccccCCCcCCc--hhh--hHHHHHHHHHHHHhHHHHHhhHH----HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCC-
Q psy8182 288 SAMEDGNENAGQ--DSS--KMIAAFLNEVAAHGAEYVIPAME----ELLLNLEKESYLMRNCTLTIVTELLINVYKRED- 358 (827)
Q Consensus 288 ~~~~~~d~~~D~--~g~--k~~s~FL~~Lae~~P~l~l~~is----~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~- 358 (827)
.... .|+ .+. =++-.|...++...|.-+..... .+...++++..++|.+.++++|.|=... .|-.
T Consensus 253 ~~~~-----~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~ 326 (503)
T PF10508_consen 253 QDSE-----EDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQL 326 (503)
T ss_pred hccc-----cCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHH
Confidence 4432 233 111 13336888888877777754333 4455678999999999999999664221 1110
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhhcCCCChH
Q psy8182 359 LSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI-PVAFTLKLLERAIGRLMDKSSN 424 (827)
Q Consensus 359 ~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~i-P~~~~~~v~~~av~RL~DKSs~ 424 (827)
+...........+...-+++..-.+=.|.++|+++..+...+.- +-.....+++.--+.+.++...
T Consensus 327 L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~ 393 (503)
T PF10508_consen 327 LLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLS 393 (503)
T ss_pred HHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchH
Confidence 10111234567788888888888888999999999999875542 4444456677766777776543
No 30
>KOG2025|consensus
Probab=92.75 E-value=0.67 Score=55.18 Aligned_cols=70 Identities=27% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q psy8182 368 DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK-AIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMI 437 (827)
Q Consensus 368 d~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~-~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll 437 (827)
+.+|..|.-=+--..--||-+++|++..|.+.+ -||-.-+.++.+....||.||-+.||..|+.-|+.+=
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 344444432222233469999999999999954 6999999999999999999999999999999999854
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.23 E-value=0.19 Score=43.86 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHhh-cccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8182 372 NVLLDHM-HDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 372 ~~L~er~-~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~l 436 (827)
+.|.+.+ .|.+++||..++.++.++.. ..+....+..+.|+++.||.+|+.-|..+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5566777 79999999999999884432 25666677777999999999999999865
No 32
>PRK09687 putative lyase; Provisional
Probab=92.08 E-value=6.1 Score=43.12 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=54.7
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChH
Q psy8182 326 ELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVA 405 (827)
Q Consensus 326 ~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~ 405 (827)
.+...+.+++..+|.+++.++|++ .+ ..-++.|..-+.|-+++||..|...+.++...
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~-----~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~------ 189 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI-----ND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD------ 189 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc-----CC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC------
Confidence 344555555666777777777632 11 22345555555678888888888887777211
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy8182 406 FTLKLLERAIGRLMDKSSNVVKYTVQLLKT 435 (827)
Q Consensus 406 ~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ 435 (827)
-..+....+..|.|....||+.|+.-|..
T Consensus 190 -~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 190 -NPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred -CHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 12455566677788888888888887765
No 33
>KOG1824|consensus
Probab=92.06 E-value=13 Score=46.16 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=88.3
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC
Q psy8182 322 PAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKA 401 (827)
Q Consensus 322 ~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~ 401 (827)
+-+..|.+|-+|.-=--||-|-||+|.++.- + =+.++-.|..+..--.||.|+-|+.+..-.+....
T Consensus 932 ~IW~lL~k~cE~~eegtR~vvAECLGkL~l~---e----------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p 998 (1233)
T KOG1824|consen 932 KIWALLFKHCECAEEGTRNVVAECLGKLVLI---E----------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP 998 (1233)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhHHhC---C----------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC
Confidence 4567888888874444499999999998853 1 16789999999999999999999999988888777
Q ss_pred CChHHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 402 IPVAFT-LKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 402 iP~~~~-~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
=|+.-. .+-..-..--++|---.|||.|++.+.+...|-|
T Consensus 999 ~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 999 QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence 666554 4566677777899999999999999999999888
No 34
>KOG0946|consensus
Probab=92.06 E-value=36 Score=41.77 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhHHHHH-hhHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHhhcC---CC--chH-------HHHHHHHH
Q psy8182 306 AAFLNEVAAHGAEYVI-PAMEELLLNLEK--ESYLMRNCTLTIVTELLINVYKRE---DL--SDE-------AKEQRDEY 370 (827)
Q Consensus 306 s~FL~~Lae~~P~l~l-~~is~l~~~Ld~--esy~lR~avle~~g~ii~~~~~~~---~~--~~~-------~~~~rd~l 370 (827)
.+=|-.+|....-.|. .-|..|++-|.. ..-.+=..+++.|.+++...=..+ +. .+. .=-++..+
T Consensus 44 ~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~ 123 (970)
T KOG0946|consen 44 VRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDN 123 (970)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchh
Confidence 3334444455544443 335566655543 233455678888887776421000 00 111 11245667
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHH--HHHHHHHHhh----cCCCChHHHHHHHHHHHHHHhhCCCCC
Q psy8182 371 LNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFT--LKLLERAIGR----LMDKSSNVVKYTVQLLKTMIESNPFAA 444 (827)
Q Consensus 371 l~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~--~~v~~~av~R----L~DKSs~VRk~Ai~Ll~~ll~~nPf~~ 444 (827)
+.+|.+-+--.+.|||--++|++..|...+ |..-+ ..+...++.+ |.|---.+|-.||-||..+...||-
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r--~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~-- 199 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCR--PTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS-- 199 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcC--CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch--
Confidence 777777777788999999999999998865 44333 3333444444 6677778999999999999999983
Q ss_pred CCChhHHHHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHH
Q psy8182 445 KATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYK 500 (827)
Q Consensus 445 ~L~~~~~v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~ 500 (827)
++++ .+....|+.++|+|+.-+.+++.
T Consensus 200 -------------IQKl----------------VAFENaFerLfsIIeeEGg~dGg 226 (970)
T KOG0946|consen 200 -------------IQKL----------------VAFENAFERLFSIIEEEGGLDGG 226 (970)
T ss_pred -------------HHHH----------------HHHHHHHHHHHHHHHhcCCCCCc
Confidence 1111 14467899999999988888875
No 35
>KOG2171|consensus
Probab=91.63 E-value=49 Score=42.19 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=121.0
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC-CCChH
Q psy8182 327 LLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK-AIPVA 405 (827)
Q Consensus 327 l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~-~iP~~ 405 (827)
|...+-...-++|..+-.++++|....+-. +=-.++..|..=.++.|+--|--|+-++..+.+-- .--..
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e---------~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPE---------KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhcccc---------chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 344455566999999999999988765432 55789999999999999999999999999988842 22223
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhhhhHhhhhh---------------
Q psy8182 406 FTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFE--------------- 470 (827)
Q Consensus 406 ~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~~~L~e~~~--------------- 470 (827)
+...+..+-..-+.|-|+.||=.|++-++++...++ -+.+.|.+..-.+..+-..+.+...
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~----~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE----NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc----cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 456889999999999999999999999999999998 3445554333333333333322221
Q ss_pred hcCCCCchhhhhhhhhHHHhh-h--ccccccHHHHHHHHHHHHHHHHHH
Q psy8182 471 ALDNDGPMFILENFDTLYSML-T--HFKSIEYKILHNVYTKLLLRSLKE 516 (827)
Q Consensus 471 Al~~e~~~~i~e~FD~lySll-~--~~~~l~~~~~~~l~~~~l~~~~s~ 516 (827)
.+....|..+..+|+.+.-+. . .-..++..+|+..+ +.|++..+.
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~AL-e~ivs~~e~ 279 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLAL-EFLVSLSEY 279 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH-HHHHHHHHh
Confidence 111223333444443332222 2 22477899999999 888877665
No 36
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.61 E-value=3.7 Score=44.36 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=115.8
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChH
Q psy8182 326 ELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVA 405 (827)
Q Consensus 326 ~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~ 405 (827)
.|-++|.+|.-..|.--++.+++++...-. +.+ .+++...+++-..+|+-|... +... ++.+..|+..+.+|..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~L---~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~ 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP-DFL---SRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPE 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH-hhc---cHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChh
Confidence 466789999999999999999999986422 112 245678899999999976555 5555 9999999998888888
Q ss_pred HHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhh-hhHhhhhhhcC-CCCchhhh
Q psy8182 406 FTLKLLERAIGR--LMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFN-ERIKDCFEALD-NDGPMFIL 481 (827)
Q Consensus 406 ~~~~v~~~av~R--L~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~-~~L~e~~~Al~-~e~~~~i~ 481 (827)
.-..+++..... .+-....+|....++|..++++|+= .+ +.+. .-+..+...+. ..||.++.
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~--~l------------~~~~~~fv~~~i~~~~gEkDPRnLl 142 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE--AL------------QSMGDDFVYGFIQLIDGEKDPRNLL 142 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH--HH------------HhchhHHHHHHHHHhccCCCHHHHH
Confidence 878888877764 4466778999999999999999761 11 2222 22233334443 67787888
Q ss_pred hhhhhHHHhhhccccccHHHHHHHH
Q psy8182 482 ENFDTLYSMLTHFKSIEYKILHNVY 506 (827)
Q Consensus 482 e~FD~lySll~~~~~l~~~~~~~l~ 506 (827)
-.|+-+.-++..|.- ......++
T Consensus 143 ~~F~l~~~i~~~~~~--~~~~e~lF 165 (262)
T PF14500_consen 143 LSFKLLKVILQEFDI--SEFAEDLF 165 (262)
T ss_pred HHHHHHHHHHHhccc--chhHHHHH
Confidence 888888888777773 44445555
No 37
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.38 E-value=1.2 Score=42.54 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHH------HHH-H--Hh-----hcCCCChHHHHHHHH
Q psy8182 366 QRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKL------LER-A--IG-----RLMDKSSNVVKYTVQ 431 (827)
Q Consensus 366 ~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v------~~~-a--v~-----RL~DKSs~VRk~Ai~ 431 (827)
.-..+.|.|..|+.|.++||..|+|+++..||+.|. ..++..+ +.. . .| +=.|-+..||..|-.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~--~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN--SDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC--HHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 446899999999999999999999999999999984 3332211 111 1 11 114566778888777
Q ss_pred HHHHHHh
Q psy8182 432 LLKTMIE 438 (827)
Q Consensus 432 Ll~~ll~ 438 (827)
++..+-.
T Consensus 113 l~~~if~ 119 (122)
T cd03572 113 LIKAIFS 119 (122)
T ss_pred HHHHHhc
Confidence 7776544
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.84 E-value=7.6 Score=49.36 Aligned_cols=121 Identities=16% Similarity=0.055 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHH-------HHHhhcCCCchHHHHHHHHH-----
Q psy8182 303 KMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELL-------INVYKREDLSDEAKEQRDEY----- 370 (827)
Q Consensus 303 k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii-------~~~~~~~~~~~~~~~~rd~l----- 370 (827)
...+..|.++.+..|. ...|...|++++..+|.+++++++.+- ...+.+++. +-.......+
T Consensus 670 ~~Aa~aL~~l~~~~~~-----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 670 RAAAEGLRELVEVLPP-----APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH-RVRIEAVRALVSVDD 743 (897)
T ss_pred HHHHHHHHHHHhccCc-----hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH-HHHHHHHHHHhcccC
Confidence 3444556666554332 246667788888899999999888642 111221110 0000000000
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8182 371 LNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 371 l~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~l 436 (827)
.+.|...+.|-++.||..+.+.+..+......+ ......-+.|..+.||..|+..|..+
T Consensus 744 ~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~-------~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 VESVAGAATDENREVRIAVAKGLATLGAGGAPA-------GDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHhccccchh-------HHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 123344555555555555555555554432211 11222334556666666666666553
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.83 E-value=4.1 Score=41.18 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccch
Q psy8182 304 MIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHT 383 (827)
Q Consensus 304 ~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~ 383 (827)
|.-.-+..|+.+.|.++-+.+..+...|.+++-.+|...+-++.+++...+ -+.+..++..+..-+.|-|+
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---------ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---------IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---------eeehhhhhHHHHHHHcCCCH
Confidence 555677889999999999999999999999999999999999999986432 34567776666777899999
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCC---------CChHHHHHHHHHHHHHHhh
Q psy8182 384 FVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMD---------KSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 384 ~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~D---------KSs~VRk~Ai~Ll~~ll~~ 439 (827)
=||+-|...|..+.... -|... ...+-..+.+|.+ .+.--|+.-+++|-.++.+
T Consensus 78 ~Ir~~A~~~~~e~~~~~-~~~~i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKR-NPNII-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred HHHHHHHHHHHHHHHhc-cchHH-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999998872 23222 2223333334443 4445566666666665543
No 40
>KOG1248|consensus
Probab=90.31 E-value=26 Score=44.65 Aligned_cols=171 Identities=16% Similarity=0.225 Sum_probs=119.1
Q ss_pred hhhHHHHhh--hcccccHHHHHHHHHHHHhhCCC--chHHHHHHHHh--ccccCCCcCCchhhhHHHHHHHHHHHHhHHH
Q psy8182 246 TVKIVQLLK--NCEHLVSPLAQAVVMFIRNHGCK--SLVREIVREIS--AMEDGNENAGQDSSKMIAAFLNEVAAHGAEY 319 (827)
Q Consensus 246 ~~~IiqlL~--~~ehl~~~~Ae~v~~l~~~~~~~--~l~~~ilreI~--~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l 319 (827)
-..|++++. +++..+.-++|.+..+ ++++.. +-.-++|-+|+ +....+ .+|. .+-++..|+..+++-
T Consensus 721 L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~-g~e~-~~~~lnefl~~Isag---- 793 (1176)
T KOG1248|consen 721 LKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDD-GNEP-ASAILNEFLSIISAG---- 793 (1176)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcc-cccc-hHHHHHHHHHHHHhh----
Confidence 345666555 2233335667777777 555433 66778888888 333221 2333 455666666665554
Q ss_pred HHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC
Q psy8182 320 VIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD 399 (827)
Q Consensus 320 ~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~ 399 (827)
|-+++..++++-+-+++.++...-.. .++ ..-..+++.+.-=+---++-+|..|+.....+|-.
T Consensus 794 -----------l~gd~~~~~as~Ivai~~il~e~~~~--ld~---~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 794 -----------LVGDSTRVVASDIVAITHILQEFKNI--LDD---ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred -----------hcccHHHHHHHHHHHHHHHHHHHhcc--ccH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 78899999999877788777653221 122 35677888888888889999999999999999986
Q ss_pred CCCChHH----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 400 KAIPVAF----TLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 400 ~~iP~~~----~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
+|... ...++.....=+.|++..||++.-.||.+|+..--
T Consensus 858 --~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 858 --FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred --CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 34333 45688888888999999999999999999999743
No 41
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.04 E-value=17 Score=41.28 Aligned_cols=219 Identities=11% Similarity=0.147 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccc--cchhhhHHHHhhhcccccHHHHHHHHHHHHhhC
Q psy8182 198 EFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHG--ISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHG 275 (827)
Q Consensus 198 ~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~--~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~ 275 (827)
.|+.-|...++.+|.+-.. ..|...+-...++.|+.++..-.|. +.....+-++. ||..-|.-.+=..-.|-|.
T Consensus 133 ~~l~~fv~~vw~lL~~~~~-~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii---e~VI~Pnl~~~e~D~ElfE 208 (370)
T PF08506_consen 133 PFLPTFVQAVWNLLTKISQ-QPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII---EKVIFPNLCLREEDEELFE 208 (370)
T ss_dssp HHHHHHHHHHHHHHTC--S-SGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH---HHTHHHHHS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh-cccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH---HHhccCccCCCHHHHHHHc
Confidence 5788899999999987543 4455666666777777665543332 22222222222 2333222111111111111
Q ss_pred CCchHHHHHHHHhccccCCCcCCc-hhhhHHHHHHHHHHHHhHHHHHhhHHHHH-Hhhc------CCCchHHHHHHHHHH
Q psy8182 276 CKSLVREIVREISAMEDGNENAGQ-DSSKMIAAFLNEVAAHGAEYVIPAMEELL-LNLE------KESYLMRNCTLTIVT 347 (827)
Q Consensus 276 ~~~l~~~ilreI~~~~~~d~~~D~-~g~k~~s~FL~~Lae~~P~l~l~~is~l~-~~Ld------~esy~lR~avle~~g 347 (827)
.+. .|-+|. ++. ..|. +.-++-..||..|++..++.+.+.+...+ .+|. +..+.-.-+.+-.+|
T Consensus 209 ddP--~EYIrr----d~e--~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 209 DDP--EEYIRR----DLE--GSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HSH--HHHHHH----HSC--SS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred cCH--HHHHHh----hcc--ccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 111 133333 332 1343 44567788999999999999988876444 4455 455677777777777
Q ss_pred HHHHHHhhcCCC-ch-HHHHHHHHHHHH-----HHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCC
Q psy8182 348 ELLINVYKREDL-SD-EAKEQRDEYLNV-----LLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMD 420 (827)
Q Consensus 348 ~ii~~~~~~~~~-~~-~~~~~rd~ll~~-----L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~D 420 (827)
-+-.+..+...+ .+ +.--....||.. |. =--..+|+.|+.|+......-.. +|......++...+.-|.+
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~--l~~~~l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ--LPKEQLLQIFPLLVNHLQS 357 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG--S-HHHHHHHHHHHHHHTTS
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHhCC
Confidence 665543222111 11 111123333332 22 11267899999999998777665 8999999999999999999
Q ss_pred CChHHHHHHHH
Q psy8182 421 KSSNVVKYTVQ 431 (827)
Q Consensus 421 KSs~VRk~Ai~ 431 (827)
.+..|+-.|--
T Consensus 358 ~~~vv~tyAA~ 368 (370)
T PF08506_consen 358 SSYVVHTYAAI 368 (370)
T ss_dssp S-HHHHHHHHH
T ss_pred CCcchhhhhhh
Confidence 99999988753
No 42
>PRK09687 putative lyase; Provisional
Probab=89.74 E-value=1.9 Score=47.02 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=68.2
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHh-hcccchhHHHHHHHHHHHHHhCCCCCh
Q psy8182 326 ELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDH-MHDVHTFVRTKVLQLFQRLVLDKAIPV 404 (827)
Q Consensus 326 ~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er-~~D~n~~vRskvLq~~~~L~~~~~iP~ 404 (827)
.+..++.+++...|...+.++|.+-. .+ ..++..+..|.+- ..|..+.||.-|+.++.+++.....|.
T Consensus 58 ~l~~ll~~~d~~vR~~A~~aLg~lg~-----~~------~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~ 126 (280)
T PRK09687 58 LAIELCSSKNPIERDIGADILSQLGM-----AK------RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS 126 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCC-----Cc------cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc
Confidence 45566778888888888888887421 11 0134566666665 588899999999999999987766553
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 405 AFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 405 ~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
..+++....-+.|++..||+.|+.-|.
T Consensus 127 ---~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 127 ---PKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred ---hHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 335555566688889999999888885
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.71 E-value=36 Score=40.34 Aligned_cols=208 Identities=14% Similarity=0.173 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHHhhC
Q psy8182 196 EEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHG 275 (827)
Q Consensus 196 ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~ 275 (827)
..+-+.+.+++..++++.... ..+...+...+....++ .+. .+.......|.+.-+-++- .+..+ .
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~-----~~l~~~~~~~L~~gL~h-~~~-~Vr~l~l~~l~~~~~~~~~---~~~~~----~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSP-----DSLLPQYQPFLQRGLTH-PSP-KVRRLALKQLGRIARHSEG---AAQLL----V 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHHhcC-CCH-HHHHHHHHHHHHHhcCCHH---HHHHh----c
Confidence 444467777777777775532 23333333444333332 111 2222222223222222221 11111 3
Q ss_pred CCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHH--HHh--hHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy8182 276 CKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEY--VIP--AMEELLLNLEKESYLMRNCTLTIVTELLI 351 (827)
Q Consensus 276 ~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l--~l~--~is~l~~~Ld~esy~lR~avle~~g~ii~ 351 (827)
...+...|+..++. .|....+..+..|.+++...+.. +++ .+..|.+.+..++=.+|+-|.+++.++-.
T Consensus 117 ~~~l~~~i~~~L~~-------~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 117 DNELLPLIIQCLRD-------PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred CccHHHHHHHHHcC-------CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 34566667776632 57778889999999998765544 211 15667777777777899999998887753
Q ss_pred HHhhcCCCchHHHHH--HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHH----HHHHHHHHHhhcCCCChHH
Q psy8182 352 NVYKREDLSDEAKEQ--RDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAF----TLKLLERAIGRLMDKSSNV 425 (827)
Q Consensus 352 ~~~~~~~~~~~~~~~--rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~----~~~v~~~av~RL~DKSs~V 425 (827)
. +++.-+. -.++++.|+.-+.|-=..||.-|+.++..|++. |.+. ..+++......|.|-+..-
T Consensus 190 ~-------S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~---~~g~~yL~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 190 H-------SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET---PHGLQYLEQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred c-------CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC---hhHHHHHHhCCHHHHHHHHHhccccCC
Confidence 2 1221121 236999999999988889999999999999994 3222 1234444444444443333
Q ss_pred HHHHHHHHH
Q psy8182 426 VKYTVQLLK 434 (827)
Q Consensus 426 Rk~Ai~Ll~ 434 (827)
|-+++-+.+
T Consensus 260 ~~~~~~l~g 268 (503)
T PF10508_consen 260 RLSSLLLPG 268 (503)
T ss_pred cccchhhhh
Confidence 444444333
No 44
>KOG2160|consensus
Probab=89.48 E-value=1.5 Score=48.60 Aligned_cols=101 Identities=16% Similarity=0.294 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy8182 364 KEQRDEYLNVLLDHMHDV-HTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPF 442 (827)
Q Consensus 364 ~~~rd~ll~~L~er~~D~-n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf 442 (827)
-+.+...||.|+++++|+ |||- |+..+.++ .+.+=|++..+.||..|...+++...|||+
T Consensus 97 le~ke~ald~Le~lve~iDnAnd----------l~~~ggl~---------~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~ 157 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNAND----------LISLGGLV---------PLLGYLENSDAELRELAARVIGTAVQNNPK 157 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHh----------HhhccCHH---------HHHHHhcCCcHHHHHHHHHHHHHHHhcCHH
Confidence 457789999999999886 5553 66554322 234478999999999999999999999997
Q ss_pred CCCCChhHHHHhhhhhhhhhhhHhhhhhhcCCCCchhh-hhhhhhHHHhhhccc
Q psy8182 443 AAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFI-LENFDTLYSMLTHFK 495 (827)
Q Consensus 443 ~~~L~~~~~v~ev~~l~ei~~~L~e~~~Al~~e~~~~i-~e~FD~lySll~~~~ 495 (827)
. .+++.... .+......++.+++... ...+-.++|+|+++.
T Consensus 158 ~--------Qe~v~E~~----~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 158 S--------QEQVIELG----ALSKLLKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred H--------HHHHHHcc----cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 3 12222222 44555566666666655 788888999999875
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.47 E-value=3.8 Score=37.43 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHh
Q psy8182 338 MRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD-KAIPVAFTLKLLERAIG 416 (827)
Q Consensus 338 lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~-~~iP~~~~~~v~~~av~ 416 (827)
-|++-+-+++.+-+..- ....+..+.++..+..=+.|.++=||.-|.+.+..++.. +.--+.++.++......
T Consensus 2 ~R~ggli~Laa~ai~l~------~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~k 75 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALG------KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCK 75 (97)
T ss_pred chhHHHHHHHHHHHHch------HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777665432 225678899999999999999999999999999999883 22223477999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHH
Q psy8182 417 RLMDKSSNVVKYTVQLLKTMI 437 (827)
Q Consensus 417 RL~DKSs~VRk~Ai~Ll~~ll 437 (827)
.+.|-...||..| .+|..+|
T Consensus 76 l~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 76 LSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHcCCchhHHHHH-HHHHHHh
Confidence 9999999999988 6776665
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.14 E-value=0.55 Score=42.81 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC-CCChHHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 368 DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK-AIPVAFT-LKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 368 d~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~-~iP~~~~-~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
.+.+..|.+-+.|.++++|..++.++..++... ....... .++++....-|.|..+.||++|+..|+.+....|
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 456777888888899999999999999999863 2222222 3677788888999999999999999999987665
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.31 E-value=7.3 Score=35.62 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcc
Q psy8182 301 SSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHD 380 (827)
Q Consensus 301 g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D 380 (827)
|.-.++..-+.|.+..+..+-.-+..++..++.+...+|=+..|++.+|... .++ ..-..-+.+|+.|...+.|
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~-----~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-ARG-----EILPYFNEIFDALCKLSAD 79 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHcC
Confidence 4445566666666666677766777888889999999999999999999854 332 2234679999999999999
Q ss_pred cchhHHHHHHHHHHHHH
Q psy8182 381 VHTFVRTKVLQLFQRLV 397 (827)
Q Consensus 381 ~n~~vRskvLq~~~~L~ 397 (827)
.++-||+.| ..+-+|.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999999998 5555554
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.38 E-value=0.65 Score=37.19 Aligned_cols=54 Identities=20% Similarity=0.147 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8182 383 TFVRTKVLQLFQRLVLDK-AIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 383 ~~vRskvLq~~~~L~~~~-~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~l 436 (827)
+-||..|+.++..+++.. .....+...++...+..|+|.+..||.+|..-|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999877643 223335678999999999999999999999877653
No 49
>KOG2171|consensus
Probab=86.50 E-value=1.1e+02 Score=39.25 Aligned_cols=299 Identities=17% Similarity=0.190 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHH
Q psy8182 171 LSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIV 250 (827)
Q Consensus 171 r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~Ii 250 (827)
-..+++++..++...-.-+ -.+++=+...+..+..|.+ .+.++|..+.++|..+++. .-.+.
T Consensus 223 a~~~l~~l~El~e~~pk~l-------~~~l~~ii~~~l~Ia~n~~----l~~~~R~~ALe~ivs~~e~-------Ap~~~ 284 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKLL-------RPHLSQIIQFSLEIAKNKE----LENSIRHLALEFLVSLSEY-------APAMC 284 (1075)
T ss_pred HHHHHHHHHHHHhhchHHH-------HHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHHHh-------hHHHh
Confidence 4567777777776543222 2345667788889999886 5689999999999888874 11111
Q ss_pred HHhhhcccccHHH-HHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCC-chhhhHHHHHHHHHHHHhH-HHHHhh-HHH
Q psy8182 251 QLLKNCEHLVSPL-AQAVVMFIRNHGCKSLVREIVREISAMEDGNENAG-QDSSKMIAAFLNEVAAHGA-EYVIPA-MEE 326 (827)
Q Consensus 251 qlL~~~ehl~~~~-Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D-~~g~k~~s~FL~~Lae~~P-~l~l~~-is~ 326 (827)
...+- +..++ ..++.++.+.-+. .|-++-+-.| -.| ....+.--.-|-.||-..| +.|++. +..
T Consensus 285 k~~~~---~~~~lv~~~l~~mte~~~D--------~ew~~~d~~d-ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~ 352 (1075)
T KOG2171|consen 285 KKLAL---LGHTLVPVLLAMMTEEEDD--------DEWSNEDDLD-EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEA 352 (1075)
T ss_pred hhchh---hhccHHHHHHHhcCCcccc--------hhhccccccc-cccccCcHHHHHHHHHHHHhcCChhhehHHHHHH
Confidence 11111 12122 2233333333222 1112211111 122 2233334455667776665 666554 567
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC--CCCCh
Q psy8182 327 LLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD--KAIPV 404 (827)
Q Consensus 327 l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~--~~iP~ 404 (827)
+-.+|.++....|.|.+-+++-+. ++..+..+...+.+++...-=+.|-+|=||..|+.++..+-.. .-+-.
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~------EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIA------EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH------cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 777899999999999999999654 3445667789999999999999999999999999999998874 12333
Q ss_pred HHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhhCCCCCCCC--hhHHHH-hhhhhh-----hhhhhHhhhhhhcCCC
Q psy8182 405 AFTLKLLERAIGRLMDK-SSNVVKYTVQLLKTMIESNPFAAKAT--TQYYVQ-AELTLE-----EFNERIKDCFEALDND 475 (827)
Q Consensus 405 ~~~~~v~~~av~RL~DK-Ss~VRk~Ai~Ll~~ll~~nPf~~~L~--~~~~v~-ev~~l~-----ei~~~L~e~~~Al~~e 475 (827)
.+...+...-+.-+.|- ++-|-..|-.-+-.+.+.+|.. .|. ++.+++ -..-+. .+....-..+.++...
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 33344444455555553 3367788888888888998853 221 122232 222222 2222222222222111
Q ss_pred CchhhhhhhhhHHHhhhcccccc-----HHHHHHHH
Q psy8182 476 GPMFILENFDTLYSMLTHFKSIE-----YKILHNVY 506 (827)
Q Consensus 476 ~~~~i~e~FD~lySll~~~~~l~-----~~~~~~l~ 506 (827)
.-..+..+||++.-++++|-.-. ...|.|..
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgktm 541 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTM 541 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHH
Confidence 11124568888888888874332 33555665
No 50
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=85.97 E-value=73 Score=37.92 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHH--hhCCCchHHHHHHHHhccccCCCcCCch
Q psy8182 223 ELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIR--NHGCKSLVREIVREISAMEDGNENAGQD 300 (827)
Q Consensus 223 ~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~--~~~~~~l~~~ilreI~~~~~~d~~~D~~ 300 (827)
..|=+..+||--+.-.|-|-..+++.=+..|-.-++=.-.+=....++.+ +-...+|+.-|..-+..++ .
T Consensus 318 ~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~S--------D 389 (898)
T COG5240 318 VLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMS--------D 389 (898)
T ss_pred HHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhc--------c
Confidence 45566677777777777777777776666555444444322222333332 1123344444444443333 1
Q ss_pred hhhHH-HHHHHHHHHHhHHHHHhhHHHHHHh-hcCCCchHHHHHHHHHHHHHHHHhhcCC-----Cc------h-HH---
Q psy8182 301 SSKMI-AAFLNEVAAHGAEYVIPAMEELLLN-LEKESYLMRNCTLTIVTELLINVYKRED-----LS------D-EA--- 363 (827)
Q Consensus 301 g~k~~-s~FL~~Lae~~P~l~l~~is~l~~~-Ld~esy~lR~avle~~g~ii~~~~~~~~-----~~------~-~~--- 363 (827)
|.|-+ -.=+..|+-+.|+--..-+..|..- ++.--|...++.++++..++...=.+.+ ++ + ++
T Consensus 390 ~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~v 469 (898)
T COG5240 390 GFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITV 469 (898)
T ss_pred CceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHH
Confidence 22221 1235567777887766666666665 3445599999999999999986522111 11 1 00
Q ss_pred ------------HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy8182 364 ------------KEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQ 431 (827)
Q Consensus 364 ------------~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~ 431 (827)
...--.+.-.+..|+.=.|+.|||.|+|++.+..-+..=|.. .+.+-.+--+.|+|+---||..|--
T Consensus 470 rIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 470 RILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS-PQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred HHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc-HHHHHHHHHHHhhcccHHHHHHHHH
Confidence 011245666677888889999999999999998765433332 3556666677799999999999988
Q ss_pred HHHHHHhh
Q psy8182 432 LLKTMIES 439 (827)
Q Consensus 432 Ll~~ll~~ 439 (827)
++..+=..
T Consensus 549 ~l~~~~~~ 556 (898)
T COG5240 549 LLRNMRLS 556 (898)
T ss_pred HHHhhhhh
Confidence 77765443
No 51
>KOG0211|consensus
Probab=85.77 E-value=15 Score=45.48 Aligned_cols=165 Identities=17% Similarity=0.085 Sum_probs=116.1
Q ss_pred HHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhH--HHHHhhHHHHHHhhcCCCchHHHHHHH
Q psy8182 267 VVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGA--EYVIPAMEELLLNLEKESYLMRNCTLT 344 (827)
Q Consensus 267 v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P--~l~l~~is~l~~~Ld~esy~lR~avle 344 (827)
+..+..+.+ ..++.+-+.+++...-.| +...-.+.++.++.++++..- -....-+..++......+|..|.+++-
T Consensus 503 ip~la~q~~-~~~~~~~~~~l~~~~l~d--~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 503 IPQLALQLG-VEFFDEKLAELLRTWLPD--HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHhhh-hHHhhHHHHHHHHhhhhh--hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 333333433 345555566666655442 566777788888888877765 333444555555555568999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChH
Q psy8182 345 IVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSN 424 (827)
Q Consensus 345 ~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~ 424 (827)
++..+.. ++.. .-+...|+..+.+=..|-.|.||-+|...+.++.-.=..|. +...|..+...=..|-...
T Consensus 580 si~~la~-v~g~-------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~-~~~~v~pll~~L~~d~~~d 650 (759)
T KOG0211|consen 580 SIHELAE-VLGQ-------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV-RDEEVLPLLETLSSDQELD 650 (759)
T ss_pred HHHHHHH-Hhcc-------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH-HHHHHHHHHHHhccCcccc
Confidence 9995554 4443 24778899999999999999999999999999987544454 4466666666666699999
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q psy8182 425 VVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 425 VRk~Ai~Ll~~ll~~nPf~ 443 (827)
||=.|++-++.+...-=+.
T Consensus 651 vr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 651 VRYRAILAFGSIELSRLES 669 (759)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 9999998888776654443
No 52
>KOG1949|consensus
Probab=85.49 E-value=25 Score=42.56 Aligned_cols=181 Identities=17% Similarity=0.156 Sum_probs=113.8
Q ss_pred hccccchhhhHHHHhhhccccc---HHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHH---
Q psy8182 239 YNHGISCTVKIVQLLKNCEHLV---SPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEV--- 312 (827)
Q Consensus 239 ~~~~~~~~~~IiqlL~~~ehl~---~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~L--- 312 (827)
|.|...+.+++-.-|-||-|-- .-+.+++..+.+-. +-|.+ . +.++..--|-+..+.++
T Consensus 140 ha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~--------l~R~L---~----a~Ns~VrsnAa~lf~~~fP~ 204 (1005)
T KOG1949|consen 140 HAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPI--------LWRGL---K----ARNSEVRSNAALLFVEAFPI 204 (1005)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH--------HHHhh---c----cCchhhhhhHHHHHHHhccC
Confidence 5666666667666777766633 44455666655521 12211 0 11222222222222222
Q ss_pred ------HHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH-hhcccchhH
Q psy8182 313 ------AAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLD-HMHDVHTFV 385 (827)
Q Consensus 313 ------ae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~e-r~~D~n~~v 385 (827)
+|-.-+++-+|.-.+.++|.++.-.+|.--++-+..++...-.-= -+...-.++..+.+ =.+|..+=|
T Consensus 205 ~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i-----P~~i~~~ll~kI~d~~a~dt~s~V 279 (1005)
T KOG1949|consen 205 RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI-----PPTILIDLLKKITDELAFDTSSDV 279 (1005)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhhhccchhe
Confidence 466778899999999999999999999977766666665432100 01223333333333 348999999
Q ss_pred HHHHHHHHHHHHhCCCCChHH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q psy8182 386 RTKVLQLFQRLVLDKAIPVAF--TLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 386 RskvLq~~~~L~~~~~iP~~~--~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~ 443 (827)
|..|...+..+..+ |..+ ...++....-.|.|+|.-||=+++++|.. |.++.|.
T Consensus 280 R~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~-ik~vra~ 335 (1005)
T KOG1949|consen 280 RCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK-IKAVRAA 335 (1005)
T ss_pred ehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHH-HHhhhhh
Confidence 99999999999987 4433 34566655556999999999999999987 5666653
No 53
>KOG2259|consensus
Probab=85.41 E-value=1.8 Score=51.26 Aligned_cols=96 Identities=24% Similarity=0.290 Sum_probs=79.6
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChH
Q psy8182 326 ELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVA 405 (827)
Q Consensus 326 ~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~ 405 (827)
.++--|+.|-|.+|.|.|..++.+... +.. --..-||.|.+=|+|--.-||-+++..++.|.... .
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~s---sP~-------FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l----~ 442 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATS---SPG-------FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL----A 442 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcC---CCC-------cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh----e
Confidence 344558899999999999999988753 222 34678999999999999999999999999999983 3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy8182 406 FTLKLLERAIGRLMDKSSNVVKYTVQLLKT 435 (827)
Q Consensus 406 ~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ 435 (827)
.+..-+....+.|+|.|..||-++-.||+.
T Consensus 443 i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 443 IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456677888899999999999998887764
No 54
>KOG1060|consensus
Probab=85.35 E-value=3.2 Score=50.26 Aligned_cols=123 Identities=15% Similarity=0.275 Sum_probs=91.1
Q ss_pred HHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhHHHHHHHH
Q psy8182 694 MFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTE 773 (827)
Q Consensus 694 ~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ 773 (827)
+++...|...+.-.|++-++ ++++.--|=+=.+|++.||.-|++-+=.|+.+++-|-..+.-+|+.-+-||.-
T Consensus 62 ~iA~G~dvS~~Fp~VVKNVa-------skn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSs 134 (968)
T KOG1060|consen 62 LIAKGKDVSLLFPAVVKNVA-------SKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSS 134 (968)
T ss_pred HHhcCCcHHHHHHHHHHHhh-------ccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHh
Confidence 33333444444556777776 46677789999999999999999999999999999999999999999988876
Q ss_pred HHHHh--------hcc--CCCChH---------------HHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHhhc
Q psy8182 774 LLINV--------YKR--EDLSDE---------------AKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECW 823 (827)
Q Consensus 774 ii~~~--------l~~--~~~~e~---------------~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~lc~ 823 (827)
|=+.. .+. .|.+.- -..+.+++.|++.+=+-|-.|-|=..|+-.+.-+|-
T Consensus 135 IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 135 IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 53322 111 111110 034567888888888889999998888888888884
No 55
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.03 E-value=11 Score=44.48 Aligned_cols=77 Identities=25% Similarity=0.236 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q psy8182 361 DEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD-KAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMI 437 (827)
Q Consensus 361 ~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~-~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll 437 (827)
+++..-.+++|..+..-+--.---||.+++|++..+++. +-|--.-++.+.+....|+-|+-+.||+.|+..|+.+=
T Consensus 83 peg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 83 PEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred hhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344566677777777666556667999999999999984 44556678999999999999999999999999998754
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.87 E-value=3 Score=52.98 Aligned_cols=101 Identities=15% Similarity=0.047 Sum_probs=63.3
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHH----------HHHhhcCCCchHHH--------HHH--HHHHHHHHHhhcccchh
Q psy8182 325 EELLLNLEKESYLMRNCTLTIVTELL----------INVYKREDLSDEAK--------EQR--DEYLNVLLDHMHDVHTF 384 (827)
Q Consensus 325 s~l~~~Ld~esy~lR~avle~~g~ii----------~~~~~~~~~~~~~~--------~~r--d~ll~~L~er~~D~n~~ 384 (827)
..|...++.++..+|.++.+++|.+= ...+++++ ..-+ +.. ......|..=+.|-++.
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~ 822 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPD--PLVRAAALAALAELGCPPDDVAAATAALRASAWQ 822 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCC--HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChH
Confidence 45678899999999999999998752 11122211 1111 000 12234455555677777
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8182 385 VRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 385 vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~l 436 (827)
||..|++.+.++-... .+...+..|.|++..||+.|+.-|..+
T Consensus 823 VR~~Aa~aL~~l~~~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 823 VRQGAARALAGAAADV---------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHhccccc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 8887777776553322 224556677888889999998888774
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=83.79 E-value=4 Score=47.02 Aligned_cols=84 Identities=17% Similarity=0.002 Sum_probs=63.4
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCCh
Q psy8182 325 EELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPV 404 (827)
Q Consensus 325 s~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~ 404 (827)
..|...|++++-.+|.++++++|..- .+ . ...|..-+.|-++|||..++.++..|....++|.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~------~~-------~----~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~ 182 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR------HD-------P----GPALEAALTHEDALVRAAALRALGELPRRLSEST 182 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc------cC-------h----HHHHHHHhcCCCHHHHHHHHHHHHhhccccchHH
Confidence 46778888888889999999999711 11 1 1233333459999999999999999998888875
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 405 AFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 405 ~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
+. .-+.|.+..||+.|+-=+.
T Consensus 183 -----L~----~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 183 -----LR----LYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred -----HH----HHHcCCCHHHHHHHHHHHH
Confidence 11 1199999999999997663
No 58
>KOG2038|consensus
Probab=83.18 E-value=60 Score=39.82 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy8182 363 AKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPF 442 (827)
Q Consensus 363 ~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf 442 (827)
.+.--.+|++.|++=.+|-=.+||.++|.+...|..++ |..- ..++.+.|..|-|+..-+--+|--||..|+..||-
T Consensus 298 LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~k--PEqE-~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 298 LKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNK--PEQE-NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCC--cHHH-HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 34555899999999999999999999999999888874 7544 78899999999999999999999999999999995
Q ss_pred C
Q psy8182 443 A 443 (827)
Q Consensus 443 ~ 443 (827)
+
T Consensus 375 M 375 (988)
T KOG2038|consen 375 M 375 (988)
T ss_pred c
Confidence 4
No 59
>KOG1824|consensus
Probab=82.78 E-value=1.4e+02 Score=37.63 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=146.0
Q ss_pred HHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHh
Q psy8182 174 GLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLL 253 (827)
Q Consensus 174 ~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL 253 (827)
+..=|..=||-|.-.| .+|.|.. +.++..++||+. +.++.....+.+|.++.+-++. --..|+..|
T Consensus 25 AtsDLm~eLqkdsi~L-----d~dSe~k-vv~~lLklL~D~------ngEVQnlAVKClg~lvsKvke~--~le~~ve~L 90 (1233)
T KOG1824|consen 25 ATSDLMTELQKDSIKL-----DDDSERK-VVKMLLKLLEDK------NGEVQNLAVKCLGPLVSKVKED--QLETIVENL 90 (1233)
T ss_pred hHHHHHHHHHhhhhhc-----cccchhH-HHHHHHHHHhcc------CcHHHHHHHHHHHHHHhhchHH--HHHHHHHHH
Confidence 3344444455443332 3344443 578899999876 4678888888899888775433 112344443
Q ss_pred hhc-----ccccHHHHHHHHHHHHhhC---CCchHHHHHHHHhccccCCC--cCCchhh-----hHHHHHHHHHHHHhHH
Q psy8182 254 KNC-----EHLVSPLAQAVVMFIRNHG---CKSLVREIVREISAMEDGNE--NAGQDSS-----KMIAAFLNEVAAHGAE 318 (827)
Q Consensus 254 ~~~-----ehl~~~~Ae~v~~l~~~~~---~~~l~~~ilreI~~~~~~d~--~~D~~g~-----k~~s~FL~~Lae~~P~ 318 (827)
... |.+-.--+=.+....-+-. .+.++.-|...|-.+--... ..|..|. ...+..+.+++...|.
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~ 170 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN 170 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc
Confidence 211 1111000111111111111 11222222222222111100 1233433 4577889999999999
Q ss_pred HHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q psy8182 319 YVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVL 398 (827)
Q Consensus 319 l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~ 398 (827)
-=..-+..++++|.+.--.+|+-.+.++|.+.... ..+-+..-.+.+++-|--| +.++=+|+ -+|++..+|.
T Consensus 171 fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-----~~~ly~~li~~Ll~~L~~~--~q~~~~rt-~Iq~l~~i~r 242 (1233)
T KOG1824|consen 171 FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-----NRDLYVELIEHLLKGLSNR--TQMSATRT-YIQCLAAICR 242 (1233)
T ss_pred hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccCCC--CchHHHHH-HHHHHHHHHH
Confidence 55666788899999999999999999999988753 2345667778888888877 77777887 4789999998
Q ss_pred CCC-CChHHHHHHHHHHHhhc---CCCChHHHHHHHHHHHHHHhhCC
Q psy8182 399 DKA-IPVAFTLKLLERAIGRL---MDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 399 ~~~-iP~~~~~~v~~~av~RL---~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
... -.=.+...++.+.+.=. +-----.|-..+|-|..||..+|
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 521 11122234444444433 33334689999999999999999
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.53 E-value=1.1e+02 Score=35.31 Aligned_cols=360 Identities=13% Similarity=0.160 Sum_probs=184.6
Q ss_pred HHHhhcccch---hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhhCCCCCCCChh
Q psy8182 374 LLDHMHDVHT---FVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMD-KSSNVVKYTVQLLKTMIESNPFAAKATTQ 449 (827)
Q Consensus 374 L~er~~D~n~---~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~D-KSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~ 449 (827)
|.+..-|..+ --+-++|.++..+|..+.+...-..+++...-..... .++-....+++-|..+++++.=..+-...
T Consensus 4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~ 83 (415)
T PF12460_consen 4 LLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDN 83 (415)
T ss_pred HHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchH
Confidence 3444444444 4567899999999998655433333333332222221 15566777888888888877633312222
Q ss_pred HH-HHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy8182 450 YY-VQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHF-KSIEYKILHNVYTKLLLRSLKEFSSILDNFLSG 527 (827)
Q Consensus 450 ~~-v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~-~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~ 527 (827)
.| -++....+=+ +-+..+...+.. ...++++.+-.++... ..++...+.+++ +-+...+- ...-...
T Consensus 84 ~~y~~~~lv~~l~----~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-~~~~~lf~-----~~~~~~~ 152 (415)
T PF12460_consen 84 SWYFHRILVPRLF----ELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEIL-DELYSLFL-----SPKSFSP 152 (415)
T ss_pred HHHHHhHHHHHHH----HHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHc-----cccccCC
Confidence 23 2222222222 222222211111 3345555555555444 567777777777 54432222 0000000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhh-hhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHH
Q psy8182 528 DSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDA-KARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQI 606 (827)
Q Consensus 528 ~~~~~~~~~~~~~~lkm~~fLl~~~~~~~e~~~~~~~~~~~~~~-kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~ 606 (827)
-..+... -...-+.++.++..++.+..+... .+....- +.--.-.. ... + ...|..+++++.-+
T Consensus 153 ~~~~~~~---~~~~~~~~~~l~~~il~~l~~~~~---~~~~~~ll~~l~~~~~-------~~~-~-~~~~~~~~~~la~L 217 (415)
T PF12460_consen 153 FQPSSST---ISEQQSRLVILFSAILCSLRKDVS---LPDLEELLQSLLNLAL-------SSE-D-EFSRLAALQLLASL 217 (415)
T ss_pred CCccccc---cccccccHHHHHHHHHHcCCcccC---ccCHHHHHHHHHHHHH-------cCC-C-hHHHHHHHHHHHHH
Confidence 0000000 001233466666676766654331 0000000 00000000 000 1 34455666666555
Q ss_pred hccccccccCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHH-----HHHHHhhCcchhhHHHHHHHHhhh
Q psy8182 607 LKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIV-----GYLIKRYNHGISCTVKIVQLLKNC 681 (827)
Q Consensus 607 L~l~l~~lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il-----~~~vk~y~h~~~~~~~IiqlL~~~ 681 (827)
. .| |.....=++|++.+.... .+. ...+.+...+.++ |+.++.|..+.....+++++|..
T Consensus 218 v----NK-~~~~~~l~~~l~~~~~~~----~~~-----~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~- 282 (415)
T PF12460_consen 218 V----NK-WPDDDDLDEFLDSLLQSI----SSS-----EDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS- 282 (415)
T ss_pred H----cC-CCChhhHHHHHHHHHhhh----ccc-----CCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-
Confidence 4 35 666655556666555544 111 2233444444444 55555577777888999998876
Q ss_pred cccchHHHHHHHHHHHhcC--------------C-cchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHH-H
Q psy8182 682 EHLVSPLAQAVVMFIRNHG--------------C-KSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEY-V 745 (827)
Q Consensus 682 Ehl~~~~Ae~v~~l~~~~~--------------~-~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~l-v 745 (827)
+.+....|++..++..+.+ | -.+...++..+.+..-+ +.|. .--+|-.=|.-+-+.+|+- +
T Consensus 283 ~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~--~~~~-~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE--ADDE-IKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh--cChh-hHHHHHHHHHHHHhhCCHHHH
Confidence 6667889999888887743 1 25667777777654322 1222 2223444444555566654 4
Q ss_pred HhhHHHHHh----hhCCCChhHHhHHHHHHHHHHHH
Q psy8182 746 IPAMEELLL----NLEKESYLMRNCTLTIVTELLIN 777 (827)
Q Consensus 746 l~~~s~L~~----~Ld~Esy~lR~aVlev~g~ii~~ 777 (827)
++++..|+| -|+.++-.+|.+.++++-.++.+
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 556555554 48999999999999999998863
No 61
>KOG0213|consensus
Probab=81.33 E-value=1.4e+02 Score=36.65 Aligned_cols=434 Identities=15% Similarity=0.220 Sum_probs=246.4
Q ss_pred HHHHHHHHHhhCCCc-----hHHHHHHHHhccccCCC--cCCchh---------------hhHHHHHHHHHHHHhHHHH-
Q psy8182 264 AQAVVMFIRNHGCKS-----LVREIVREISAMEDGNE--NAGQDS---------------SKMIAAFLNEVAAHGAEYV- 320 (827)
Q Consensus 264 Ae~v~~l~~~~~~~~-----l~~~ilreI~~~~~~d~--~~D~~g---------------~k~~s~FL~~Lae~~P~l~- 320 (827)
-|....+..+|+.|. ++=.+++.+|.++.-+- -++... -|||.....--.+.+-++-
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~ 714 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS 714 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc
Confidence 366778889999885 44467777777665431 111111 1222222222222222222
Q ss_pred HhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-
Q psy8182 321 IPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDE-AKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVL- 398 (827)
Q Consensus 321 l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~-~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~- 398 (827)
-+-++-++.-|-+|+-.-|.-+.+.+..++... -..+.++. ...-.|+++..++|-..+.+ | -|..|.-.+.
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l-g~~diderleE~lidgil~Afqeqtt~d~--v---ml~gfg~V~~~ 788 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL-GAADIDERLEERLIDGILYAFQEQTTEDS--V---MLLGFGTVVNA 788 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHhcccchh--h---hhhhHHHHHHH
Confidence 234677777788899999999999999998753 33333443 34567999999988876655 2 2333333333
Q ss_pred --CCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhhhhHhhhhhhcCCCC
Q psy8182 399 --DKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDG 476 (827)
Q Consensus 399 --~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~~~L~e~~~Al~~e~ 476 (827)
.++.| +..++..-..-||..||+.||-.|..|++.+..- +. -|+|..-+..+...|- +.+..+.
T Consensus 789 lg~r~kp--ylpqi~stiL~rLnnksa~vRqqaadlis~la~V------lk---tc~ee~~m~~lGvvLy---Eylgeey 854 (1172)
T KOG0213|consen 789 LGGRVKP--YLPQICSTILWRLNNKSAKVRQQAADLISSLAKV------LK---TCGEEKLMGHLGVVLY---EYLGEEY 854 (1172)
T ss_pred Hhhcccc--chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH------HH---hccHHHHHHHhhHHHH---HhcCccc
Confidence 33444 5678999999999999999999999999876321 00 0344444444443333 3333344
Q ss_pred chhhhhhhhhHHHhhh--ccccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy8182 477 PMFILENFDTLYSMLT--HFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFII 554 (827)
Q Consensus 477 ~~~i~e~FD~lySll~--~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~~~~~~~~~~~~~~~lkm~~fLl~~~~~ 554 (827)
|.....++..++++.- ++.+..+-++ ++|- .+.. -.++.|...-+ .+.
T Consensus 855 pEvLgsILgAikaI~nvigm~km~pPi~-----dllP--------rltP---------ILknrheKVqe-n~I------- 904 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTPPIK-----DLLP--------RLTP---------ILKNRHEKVQE-NCI------- 904 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChh-----hhcc--------cchH---------hhhhhHHHHHH-HHH-------
Confidence 4333333333333321 1222221111 1110 0001 11122222111 111
Q ss_pred HHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHHhccccccccCCChhhHHHHH--HHHHHH
Q psy8182 555 NFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVN--MVANCC 632 (827)
Q Consensus 555 ~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~--l~~~~~ 632 (827)
+++..+...- | +|++ =+.|.|
T Consensus 905 ----------------------------------------------dLvg~Iadrg------p-----E~v~aREWMRIc 927 (1172)
T KOG0213|consen 905 ----------------------------------------------DLVGTIADRG------P-----EYVSAREWMRIC 927 (1172)
T ss_pred ----------------------------------------------HHHHHHHhcC------c-----ccCCHHHHHHHH
Confidence 1111111000 0 0121 157899
Q ss_pred HHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcc-cchHHHHHHHHHHHhcCCcchHHHHHHH
Q psy8182 633 YKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEH-LVSPLAQAVVMFIRNHGCKSLVREIVRE 711 (827)
Q Consensus 633 y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Eh-l~~~~Ae~v~~l~~~~~~~~l~~eilre 711 (827)
|-|+|.= ...+|++|.+...-+|...|--|-. .+-..++.+|.-.|- .-..-+=++.+.++-.+.-++.--++.|
T Consensus 928 feLlelL---kahkK~iRRaa~nTfG~IakaIGPq-dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmne 1003 (1172)
T KOG0213|consen 928 FELLELL---KAHKKEIRRAAVNTFGYIAKAIGPQ-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNE 1003 (1172)
T ss_pred HHHHHHH---HHHHHHHHHHHHhhhhHHHHhcCHH-HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhh
Confidence 9999987 3478889999888888777664422 233445555554442 2222223345555655555555555555
Q ss_pred HhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhccCCCChHHHHH
Q psy8182 712 ISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQ 791 (827)
Q Consensus 712 I~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ii~~~l~~~~~~e~~k~~ 791 (827)
--- |+ ..--..--|+.|=|+.-..+.+-+.+.....+|-+-|-.+--.=|.--..++.+|...+.-. .+ ...
T Consensus 1004 Yrt--Pe-~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~--g~---eda 1075 (1172)
T KOG0213|consen 1004 YRT--PE-ANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT--GC---EDA 1075 (1172)
T ss_pred ccC--ch-hHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc--Cc---HHH
Confidence 321 21 12334556999999999999999999999999999988888888877777777666543221 11 233
Q ss_pred HHHHHHHHHHhcCcCChhhhhHHHH
Q psy8182 792 RDEYLNVLLDHMHDVHTFVRTKVST 816 (827)
Q Consensus 792 rd~~ld~L~er~~D~nayVRsKvlq 816 (827)
--.+|+++---++|-+|.|=-.+.-
T Consensus 1076 ~iHLLN~iWpNIle~sPhviqa~~e 1100 (1172)
T KOG0213|consen 1076 LIHLLNLIWPNILETSPHVIQAFDE 1100 (1172)
T ss_pred HHHHHHHhhhhhcCCChHHHHHHHH
Confidence 4568888889999999987655543
No 62
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.58 E-value=3 Score=29.54 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=16.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHh
Q psy8182 412 ERAIGRLMDKSSNVVKYTVQLLKTMIE 438 (827)
Q Consensus 412 ~~av~RL~DKSs~VRk~Ai~Ll~~ll~ 438 (827)
.....-++|.+..||.+|+.-|..+.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 344556677777777777777776654
No 63
>KOG0413|consensus
Probab=80.35 E-value=13 Score=46.24 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHh---HHHHHhhHHHHHHhhc-CCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhh
Q psy8182 303 KMIAAFLNEVAAHG---AEYVIPAMEELLLNLE-KESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHM 378 (827)
Q Consensus 303 k~~s~FL~~Lae~~---P~l~l~~is~l~~~Ld-~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~ 378 (827)
+=+|.=.+-||+.| -++--+-|..|.+.|+ |+...+||.+|=+||.+-+.. ....|.++-.+..++
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----------Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----------TAMTDRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----------HHHHHHhhHHHHHHh
Confidence 33444445555543 3444457788888888 799999999999999887753 346799999999999
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-CCCCCCCChhHHHHhhhh
Q psy8182 379 HDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES-NPFAAKATTQYYVQAELT 457 (827)
Q Consensus 379 ~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~-nPf~~~L~~~~~v~ev~~ 457 (827)
.|-.++||-.++-.+++|.+.+-+ ++...+.=.-+-.|-|-+.-+|+-|==+++.+|.. +| .+-...||+-++.
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~v--Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P---~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIV--KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP---NFFPLNFVEYIIA 1090 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhh--hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHH
Confidence 999999999999999999997632 34455555666778899999999999999988874 66 3344556777776
Q ss_pred hhhh
Q psy8182 458 LEEF 461 (827)
Q Consensus 458 l~ei 461 (827)
+.+-
T Consensus 1091 ln~~ 1094 (1529)
T KOG0413|consen 1091 LNQA 1094 (1529)
T ss_pred HHHH
Confidence 6554
No 64
>KOG1240|consensus
Probab=80.06 E-value=84 Score=40.55 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=143.0
Q ss_pred hhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHH----HHHHHHHHHHHHhcc--ccchhhhHHHHhhhc---
Q psy8182 186 INKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRV----FIFQIVGYLIKRYNH--GISCTVKIVQLLKNC--- 256 (827)
Q Consensus 186 l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~----~if~il~~~vk~~~~--~~~~~~~IiqlL~~~--- 256 (827)
|=+...+-..+|.-+..++=...+++++|. +.+|. .+.++|+ .|+.... +.-++--|+=.|+++
T Consensus 446 Ll~~lS~~i~de~~LDRVlPY~v~l~~Ds~------a~Vra~Al~Tlt~~L~-~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 446 LLQELSTYIDDEVKLDRVLPYFVHLLMDSE------ADVRATALETLTELLA-LVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHhhhcchHHHHhhhHHHHHHHhcCch------HHHHHHHHHHHHHHHh-hccCCCcccchhhHhhhhhhhHhhhcc
Confidence 444567777888999999999999999995 23444 4445543 3444332 222333333322221
Q ss_pred ---ccccHHHHHHHHHHHHh-hCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhc
Q psy8182 257 ---EHLVSPLAQAVVMFIRN-HGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLE 332 (827)
Q Consensus 257 ---ehl~~~~Ae~v~~l~~~-~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld 332 (827)
+|+=-..|..+..+++. |..-.++ --+|..+...+. ..++.+--++-.-+..|-.-+-+. +..+|.
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~-q~~~~~g~~n~~--nset~~~~~~~~~~~~L~~~V~~~-------v~sLls 588 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELT-QELRQAGMLNDP--NSETAPEQNYNTELQALHHTVEQM-------VSSLLS 588 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHH-HHHHhcccccCc--ccccccccccchHHHHHHHHHHHH-------HHHHHc
Confidence 12223455666666553 1111111 112222222322 233555555555555443333222 234455
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcCCC-----------chHHHH--------------------HHHHHHHHHHHhhccc
Q psy8182 333 KESYLMRNCTLTIVTELLINVYKREDL-----------SDEAKE--------------------QRDEYLNVLLDHMHDV 381 (827)
Q Consensus 333 ~esy~lR~avle~~g~ii~~~~~~~~~-----------~~~~~~--------------------~rd~ll~~L~er~~D~ 381 (827)
.+.-.+|.|++|.++.+-.-.=+.... .|+-.. .-+-++=+|+.=+-|-
T Consensus 589 d~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 589 DSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred CCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCc
Confidence 555678888888877665432221110 111111 2255667788889999
Q ss_pred chhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 382 HTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 382 n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
-.+|=.+||+.+.-||+.+-+-+....++++.+.-=|---+.-||+.++.++.+....
T Consensus 669 EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 669 EEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred chhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999888888889999998889999999999999999987654
No 65
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=78.72 E-value=3.6 Score=29.13 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELLI 351 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii~ 351 (827)
+..+++.+.++++.+|.+.++++|++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999875
No 66
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.47 E-value=9.3 Score=39.05 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 367 RDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI-PVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 367 rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~i-P~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
.+.+++.+.+-..+.++-||..|++++.-+..+|-+ |..-...+++ =.-|..+.+|+.|.+++..+-+.||
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA----L~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA----LETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh----hhCCCChHHHHHHHHHHHHHHHHhH
Confidence 467899999999999999999999999999999954 4433344444 4467899999999999999999998
No 67
>KOG4653|consensus
Probab=76.80 E-value=53 Score=40.77 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=83.3
Q ss_pred CchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCC-c---hHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy8182 298 GQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKES-Y---LMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNV 373 (827)
Q Consensus 298 D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~es-y---~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~ 373 (827)
|+=.-=|+=.=++.|++..|+-|++-+ ..+.+|++ . -+|--|=|++++++... | |=..+.++.+++.
T Consensus 781 dsyvyLnaI~gv~~Lcevy~e~il~dL---~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~--G----el~~~y~~~Li~t 851 (982)
T KOG4653|consen 781 DSYVYLNAIRGVVSLCEVYPEDILPDL---SEEYLSEKKKLQTDYRLKVGEAILKVAQAL--G----ELVFKYKAVLINT 851 (982)
T ss_pred CceeeHHHHHHHHHHHHhcchhhHHHH---HHHHHhcccCCCccceehHHHHHHHHHHHh--c----cHHHHHHHHHHHH
Confidence 444455566667788999999988654 44444433 1 24444448888777642 2 2223344555555
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhhC
Q psy8182 374 LLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVA-FTLKLLERAIGRL-MDKSSNVVKYTVQLLKTMIESN 440 (827)
Q Consensus 374 L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~-~~~~v~~~av~RL-~DKSs~VRk~Ai~Ll~~ll~~n 440 (827)
-.-=+.|---=-|.-.+-.+..||...+.-.. +.++++...+.=. -|.|.+|||+|++|+..+|..-
T Consensus 852 fl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 852 FLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 55445554444599999999999996553322 3344444332211 2999999999999999988643
No 68
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.42 E-value=1.3e+02 Score=33.56 Aligned_cols=172 Identities=12% Similarity=0.147 Sum_probs=102.4
Q ss_pred HHHHhhcCCC-chHHHHHHHHHHHHHHHHhhcCCCchH----HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-C
Q psy8182 326 ELLLNLEKES-YLMRNCTLTIVTELLINVYKREDLSDE----AKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVL-D 399 (827)
Q Consensus 326 ~l~~~Ld~es-y~lR~avle~~g~ii~~~~~~~~~~~~----~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~-~ 399 (827)
..-.+.++.+ ..+=..+.++++.++..........+. .+.-.+.-+..|.--+....+....-+|+++..++. .
T Consensus 8 ~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~~~~~~~~g~~l~~~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~ 87 (330)
T PF11707_consen 8 QIWSYAAQVNNHSLLSLVSSVLALLLKKLSSDLSFQSYGLELIRSILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFD 87 (330)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccC
Confidence 3444455433 245566666666666544332221111 111122224455555555556666788999998888 6
Q ss_pred CC-CChHH-------HHHHHHHHHhhcCCCCh---------HHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhh
Q psy8182 400 KA-IPVAF-------TLKLLERAIGRLMDKSS---------NVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFN 462 (827)
Q Consensus 400 ~~-iP~~~-------~~~v~~~av~RL~DKSs---------~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~ 462 (827)
+. .-... ...+..++..|-.++.. .||.++|+++-+++..-|. ....+++..+.+
T Consensus 88 ~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~-------~~~~~lL~~~~~- 159 (330)
T PF11707_consen 88 GGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDP-------ELKRDLLSQKKL- 159 (330)
T ss_pred CHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCH-------HHHHHHHHcCch-
Confidence 51 11111 12344444444433322 9999999999999987652 223344444443
Q ss_pred hhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHH
Q psy8182 463 ERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYT 507 (827)
Q Consensus 463 ~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~ 507 (827)
+..++..+..+.+..+..+++++..-+-.-..++...|-+++.
T Consensus 160 --~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn 202 (330)
T PF11707_consen 160 --MSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN 202 (330)
T ss_pred --HHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC
Confidence 5777777866666677899999998777777999999999993
No 69
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.39 E-value=1.6e+02 Score=33.89 Aligned_cols=174 Identities=16% Similarity=0.249 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHH--HHhhHHHHHHhh-cCCCchHH
Q psy8182 263 LAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEY--VIPAMEELLLNL-EKESYLMR 339 (827)
Q Consensus 263 ~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l--~l~~is~l~~~L-d~esy~lR 339 (827)
.+..+..+..+...+. ..++++++-....+ ..+......++..+.-|..+.|.- +-.-+..+...+ ..+.-..|
T Consensus 171 ~~~il~~l~~~~~~~~-~~~ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~ 247 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPD-LEELLQSLLNLALS--SEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELR 247 (415)
T ss_pred HHHHHHcCCcccCccC-HHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchh
Confidence 3444555555555443 23466666665555 355666777888888888885443 333344444444 45667778
Q ss_pred HHHHHHHHHHHHHHhhcCCC-------------------------------c-hH---------HH---HHH--HHHHHH
Q psy8182 340 NCTLTIVTELLINVYKREDL-------------------------------S-DE---------AK---EQR--DEYLNV 373 (827)
Q Consensus 340 ~avle~~g~ii~~~~~~~~~-------------------------------~-~~---------~~---~~r--d~ll~~ 373 (827)
...+++++-+......+.+. + +. -| +|| ..++-.
T Consensus 248 ~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 248 PQALEILIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 78888877666654332110 1 11 01 233 445556
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhCCCCChHH----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 374 LLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAF----TLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 374 L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~----~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
|.+.+.+.+.-.|..-|.++..|... +|..- ...++.+.+..|.=-+..||.++++.|..++..+|
T Consensus 328 L~~~~~~~~~~~k~~yL~ALs~ll~~--vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNYLTALSHLLKN--VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHhhcChhhHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 77777777777889999999999984 66443 46788888999877777899999999999999886
No 70
>KOG2023|consensus
Probab=75.04 E-value=38 Score=40.82 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=91.2
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC--
Q psy8182 323 AMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK-- 400 (827)
Q Consensus 323 ~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~-- 400 (827)
.|..+++++.++|-.||.--+.|+-..|.. . ++..-...|.|++.|..+..|.++-||..|=+.+..|.|-+
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~--~----~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIII--Q----TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeec--C----cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 456778899999999999999998877753 1 23344578999999999999999999999999999999943
Q ss_pred -CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 401 -AIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 401 -~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
.+| +...+++--..|-+|-.-.|-=.|..+..++ ..+|
T Consensus 249 kl~p--hl~~IveyML~~tqd~dE~VALEACEFwla~-aeqp 287 (885)
T KOG2023|consen 249 KLVP--HLDNIVEYMLQRTQDVDENVALEACEFWLAL-AEQP 287 (885)
T ss_pred hccc--chHHHHHHHHHHccCcchhHHHHHHHHHHHH-hcCc
Confidence 444 5789999999999999999999999988874 3444
No 71
>KOG2140|consensus
Probab=73.17 E-value=82 Score=37.12 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcccchHHHHHHHHHHHhcCCcchHHHHHHHH---hcccCCCccCCCc
Q psy8182 649 LRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREI---SAMEDGNENAGQD 725 (827)
Q Consensus 649 ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI---~~~~~~d~~~Ds~ 725 (827)
+++.|-.++..-|-+ |-++- .-+|||.=..-.-..+..|.+++++..+ .|++++-+|+++ ..+.|+ .+|-.
T Consensus 180 i~~ii~eLfqeNiir-gRgl~-crsv~~aq~asp~ft~vyaALvAviNsk--fP~IgElLlkrLilqf~r~f~--RnDk~ 253 (739)
T KOG2140|consen 180 IQEIIRELFQENIIR-GRGLL-CRSVMQAQAASPGFTPVYAALVAVINSK--FPQIGELLLKRLILQFKRSFR--RNDKV 253 (739)
T ss_pred HHHHHHHHHHHHHHh-ccchh-HHHHHHHHhcCCCCcHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhc--ccchH
Confidence 555555555444433 34432 3455554444444566677777777654 689999999998 446787 69999
Q ss_pred chhHHHHHHHHHHHHhHH---HHHhhHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhcc
Q psy8182 726 SSKMIAAFLNEVAAHGAE---YVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKR 781 (827)
Q Consensus 726 g~K~~s~FL~~Lae~~P~---lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ii~~~l~~ 781 (827)
.-=|.+.|+..|-..--. +.+..|.+|+.-=-+.|..+=.|++..||-.+..+...
T Consensus 254 ~c~~~~kfiahLinq~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 254 SCLNASKFIAHLINQQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChH
Confidence 999999999888654322 23344444444444589999999999999999887654
No 72
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=72.58 E-value=1.2e+02 Score=33.19 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=70.9
Q ss_pred HHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchH----HHHHHHHHHHHHHHhhcccchhH
Q psy8182 310 NEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDE----AKEQRDEYLNVLLDHMHDVHTFV 385 (827)
Q Consensus 310 ~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~----~~~~rd~ll~~L~er~~D~n~~v 385 (827)
.-.+-..++....++..+...+..+...+|...+.++.+++.. +.-+..+.. .......+++++..-+.+.++-+
T Consensus 52 Gl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~-~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 130 (298)
T PF12719_consen 52 GLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT-HGIDIFDSESDNDESVDSKSLLKILTKFLDSENPEL 130 (298)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCchhccchhccCccchHhHHHHHHHHHHhcCCHHH
Confidence 3344555677777888888888888999999999999999984 322221111 22456778888888887789999
Q ss_pred HHHHHHHHHHHHhCCCCCh
Q psy8182 386 RTKVLQLFQRLVLDKAIPV 404 (827)
Q Consensus 386 RskvLq~~~~L~~~~~iP~ 404 (827)
|+.|.+.+.||.-.+.++-
T Consensus 131 ~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 131 QAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred HHHHHHHHHHHHhcCCCCc
Confidence 9999999999998877765
No 73
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=72.54 E-value=3.7 Score=39.15 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCcCChhhhhHHHHHHHHhhcCC
Q psy8182 792 RDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQP 825 (827)
Q Consensus 792 rd~~ld~L~er~~D~nayVRsKvlq~~~~lc~~~ 825 (827)
-..+.|.|..|+.|.+++|.-|+|.++..+|+.-
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 4688999999999999999999999999999863
No 74
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=71.43 E-value=14 Score=42.59 Aligned_cols=87 Identities=13% Similarity=-0.042 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCC
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIP 403 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP 403 (827)
+..|+..|++..-.+|-++.+.+|.+=. ......|..-+-|-+++||.-++-.+...-.. |
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~---~ 148 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD---P 148 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC---h
Confidence 6788889999888899999999995321 33444555555789999999999776652211 3
Q ss_pred hHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8182 404 VAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 404 ~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~l 436 (827)
. ..+..-|.|.++.||..|+..|..+
T Consensus 149 ~-------~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 149 G-------PALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred H-------HHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 2 2333346799999999999999874
No 75
>KOG2023|consensus
Probab=71.34 E-value=2.5e+02 Score=34.32 Aligned_cols=130 Identities=20% Similarity=0.253 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHhh-HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcc
Q psy8182 302 SKMIAAFLNEVAAHGAEYVIPA-MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHD 380 (827)
Q Consensus 302 ~k~~s~FL~~Lae~~P~l~l~~-is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D 380 (827)
-|.=|.+|-=||.-.|.-+++. +..|-.+|.+|.+.+|-|-+=++|.|-..-.++= -.-.-.++-.|.+-+.|
T Consensus 372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~------~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF------VPHLPELIPFLLSLLDD 445 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc------ccchHHHHHHHHHHhcc
Confidence 3667889999999999888776 5566677999999999999999998876654431 11223677788888899
Q ss_pred cchhHHHHHH---HHHHH-HHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 381 VHTFVRTKVL---QLFQR-LVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 381 ~n~~vRskvL---q~~~~-L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
..|-||+-+= .=+.+ +++.. +-.++..+++-..+|+.|+.--|--+|+.-++++-+.
T Consensus 446 KkplVRsITCWTLsRys~wv~~~~--~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 446 KKPLVRSITCWTLSRYSKWVVQDS--RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred CccceeeeeeeeHhhhhhhHhcCC--hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 9999998542 22222 22332 5567789999999999999999999999999987665
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=71.13 E-value=1.6e+02 Score=35.18 Aligned_cols=150 Identities=17% Similarity=0.266 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHH--------------hhcCCCchH-----
Q psy8182 302 SKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINV--------------YKREDLSDE----- 362 (827)
Q Consensus 302 ~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~--------------~~~~~~~~~----- 362 (827)
+|+++.|-.+= ..|..+-+-++.|..+|.+.....|=+.+-++..+-... .++++.+-.
T Consensus 285 Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAIT 362 (898)
T COG5240 285 ARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAIT 362 (898)
T ss_pred HHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHH
Confidence 45555443332 358888888999999999999999999988888775431 111111000
Q ss_pred ------HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHH
Q psy8182 363 ------AKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSN-VVKYTVQLLKT 435 (827)
Q Consensus 363 ------~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~-VRk~Ai~Ll~~ 435 (827)
-.++.|++...+..-+||++---.--|+.++..||-. +| +.+..++.--+..|.|+... -.|+++--++.
T Consensus 363 tLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~--Fp-~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 363 TLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL--FP-SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred HHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhh--Cc-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1468899999999999999988888888888888876 55 45577777788888887765 56677888999
Q ss_pred HHhhCCCCCCCChhHHHHhhh
Q psy8182 436 MIESNPFAAKATTQYYVQAEL 456 (827)
Q Consensus 436 ll~~nPf~~~L~~~~~v~ev~ 456 (827)
++.+-|=+..+-++.+|+.+.
T Consensus 440 ~~~~~p~skEraLe~LC~fIE 460 (898)
T COG5240 440 AMENDPDSKERALEVLCTFIE 460 (898)
T ss_pred HHhhCchHHHHHHHHHHHHHh
Confidence 999999887888888766554
No 77
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=70.76 E-value=72 Score=37.85 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=82.3
Q ss_pred CchhhhHH-HHHHHHHHHHhHHHHHhhHHHHHHhhc---CCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy8182 298 GQDSSKMI-AAFLNEVAAHGAEYVIPAMEELLLNLE---KESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNV 373 (827)
Q Consensus 298 D~~g~k~~-s~FL~~Lae~~P~l~l~~is~l~~~Ld---~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~ 373 (827)
+....|+. -+=|..|+.+.|.++.+.++.+..+++ +|.-.+|-++-|+++.++.......+ +.....+..+..+
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~--~~~~~~~~~~~~l 463 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD--DEDEQKRLLLELL 463 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHH
Confidence 34444443 467899999999999999988888755 68899999999999999987544332 2234566777778
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhCCCCChHH
Q psy8182 374 LLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAF 406 (827)
Q Consensus 374 L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~ 406 (827)
+.+...+....||.-|++--..+.--.-+|-++
T Consensus 464 ~~~~~~~~~~~~R~~avk~an~~fpf~d~~aR~ 496 (501)
T PF13001_consen 464 LLSYIQSEVRSCRYAAVKYANACFPFSDVPARY 496 (501)
T ss_pred HHhhccchhHHHHHHHHHHHHHhCCccchHHHH
Confidence 888889999999999999988877766666433
No 78
>KOG2149|consensus
Probab=70.30 E-value=11 Score=42.75 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhC
Q psy8182 366 QRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPV-AFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESN 440 (827)
Q Consensus 366 ~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~-~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~n 440 (827)
+|.--++-|.-++.=.|+-||.-||+.+.++.-.+..-+ .+...++.....+..|.+++||..++||+..++...
T Consensus 55 ~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~ 130 (393)
T KOG2149|consen 55 KKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPA 130 (393)
T ss_pred cccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhc
Confidence 455567777888888999999999999999999843323 356788899999999999999999999999977654
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=69.83 E-value=15 Score=29.23 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q psy8182 337 LMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRL 396 (827)
Q Consensus 337 ~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L 396 (827)
.+|.+.+-++|++.. ...+..+.....++..|...+.|-++.||..|...+.+|
T Consensus 2 ~vR~~A~~aLg~l~~------~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAE------GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTT------TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhc------ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578888999998321 122334567889999999999999999999999887654
No 80
>KOG0413|consensus
Probab=69.73 E-value=3.2e+02 Score=34.88 Aligned_cols=397 Identities=14% Similarity=0.103 Sum_probs=194.0
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCC-CCCCh
Q psy8182 370 YLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA-AKATT 448 (827)
Q Consensus 370 ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~-~~L~~ 448 (827)
.|-+|.+-.+|--.=||.++.+.+++|.-....-.......+...+.-++|--+.|--.|..||-+++.-|-.. ..|.-
T Consensus 617 ~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW 696 (1529)
T KOG0413|consen 617 VLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAW 696 (1529)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHH
Confidence 38889999999999999999999999998764433445567777788899999999999999999988764432 34433
Q ss_pred hHH--HHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHhhh-h
Q psy8182 449 QYY--VQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNF-L 525 (827)
Q Consensus 449 ~~~--v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~-~ 525 (827)
..+ ++-+...++--...-..|.-..--.+..+.+.-+. .+..++++. | -. ++.++-+...+ +
T Consensus 697 ~LL~~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~~~h-----sG~E~~~~a-----W-m~----~s~~~~q~~~~d~ 761 (1529)
T KOG0413|consen 697 TLLDTIESVTNHSQYLMSTLHDWVREKKVKRTVMDSMKQH-----SGSEKLDGA-----W-MV----FSQLCVQFEQVDF 761 (1529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcc-----cCcccCcch-----H-HH----HHHHHhcccccce
Confidence 322 33222222222222333422222222222111110 122333332 1 01 12222222220 0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcchhh-HHHHHHHHH
Q psy8182 526 SGDSLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFH-LSNGLNSIH 604 (827)
Q Consensus 526 ~~~~~~~~~~~~~~~~lkm~~fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~-r~~~L~~l~ 604 (827)
.-.-.+.++....-|...+...+++ -+..++... ++....+ -.+.-|.- =.-.++.|..+ ...+++.+.
T Consensus 762 S~~~~s~~~~s~~~N~~~~L~hI~~-~i~~i~~~l----~s~~vd~-~~~a~K~~----Ck~~~~~~s~e~~~~~~d~i~ 831 (1529)
T KOG0413|consen 762 SIETFSRVDLSRESNLVQYLIHIIE-NIKKIDDDL----KSDLVDT-LQGAFKDY----CKHPSSRSSYECLGKLMDGIG 831 (1529)
T ss_pred eeecccccccchhhhHHHHHHHHHH-HHHhhhhcc----cHHHHHH-HHHHHHHH----HcCCccccHHHHHHHHHHHHH
Confidence 0000222222223333444445555 344443222 2221111 00000000 00011345432 223333333
Q ss_pred HHhccccccccCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHH-HHHHHhhCcchhhH---------HHH
Q psy8182 605 QILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIV-GYLIKRYNHGISCT---------VKI 674 (827)
Q Consensus 605 ~~L~l~l~~lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il-~~~vk~y~h~~~~~---------~~I 674 (827)
++.. ...-.-|..+..++--|+..+-...- ..|++...+...+-+ -.+...|+-+++-. .++
T Consensus 832 ~~sl-------~~~e~~~~~iE~l~~~c~d~i~~~~~-~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~ar~~K~ 903 (1529)
T KOG0413|consen 832 DRSL-------HGKEFSDFGIETLLIKCFDTIVQSFE-MFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPHARLGKT 903 (1529)
T ss_pred HHHh-------hcccCchHHHhhHHHhccceehhHHh-hhhhhHHHhhcchhHHHHHHHHhhccccccceeccchhccce
Confidence 2221 11122233444444444433322221 123333333222222 11122344443211 111
Q ss_pred HHHHh-hhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCC-ccCCCcchhHHHHHHHHHHHHh---HHHHHhhH
Q psy8182 675 VQLLK-NCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGN-ENAGQDSSKMIAAFLNEVAAHG---AEYVIPAM 749 (827)
Q Consensus 675 iqlL~-~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d-~~~Ds~g~K~~s~FL~~Lae~~---P~lvl~~~ 749 (827)
+-+|. -.+..+. +. .+..++=. -|+-+..++. ...--.+++=+|.=.+-||+.| -++.=+-|
T Consensus 904 ~~lLv~s~~~gss---Da------~htp~tq~----se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcLah~~LaKr~~ 970 (1529)
T KOG0413|consen 904 LSLLVNSTENGSS---DA------PHTPPTQL----SEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCLAHDRLAKRLM 970 (1529)
T ss_pred eeeeeeeeccCCC---CC------CCCCccch----hhCcccCCCccccccccchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 11110 0111110 00 01111111 1332222221 0112344566666677777766 34555689
Q ss_pred HHHHhhhC-CCChhHHhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHhh
Q psy8182 750 EELLLNLE-KESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLEC 822 (827)
Q Consensus 750 s~L~~~Ld-~Esy~lR~aVlev~g~ii~~~l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~lc 822 (827)
..|++.|+ |+...+||-||=+||++-+ .+....|.|+-.+-.++.|-.++||-.++-.+.+|.
T Consensus 971 P~lvkeLe~~~~~aiRnNiV~am~D~C~----------~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 971 PMLVKELEYNTAHAIRNNIVLAMGDICS----------SYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLL 1034 (1529)
T ss_pred HHHHHHHHhhhHHHHhcceeeeehhhHH----------HHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 99999998 9999999999999998765 356778999999999999999999999998888875
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=69.36 E-value=1.2e+02 Score=33.33 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhc-CCCchHHHHHHHHHHHHH
Q psy8182 301 SSKMIAAFLNEVAAHGAEYVIPAMEELLLNLE-KESYLMRNCTLTIVTELL 350 (827)
Q Consensus 301 g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld-~esy~lR~avle~~g~ii 350 (827)
..|..+.+ -|++.-+..-++ .|+.+|. ++++.+|.....++|.+-
T Consensus 89 ~vr~~a~~--aLg~~~~~~a~~---~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 89 RVRDAAAD--ALGELGDPEAVP---PLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHH--HHHccCChhHHH---HHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 55666665 555555333222 3444455 577888888888777653
No 82
>KOG2011|consensus
Probab=68.49 E-value=1.7e+02 Score=37.60 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHhhcccchhHHHHHHHHHHHHHhCCCCChHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 375 LDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTL-KLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 375 ~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~-~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
.-|.+|+-|-.|+--+|-+..=|.. .|--+.. ..++-.+=-|.||++.||+..++-|..|.++
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~--yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKS--YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHh--ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4589999999999999887666665 6866653 4677778889999999999999999999998
No 83
>KOG1967|consensus
Probab=67.55 E-value=78 Score=39.68 Aligned_cols=178 Identities=24% Similarity=0.267 Sum_probs=116.0
Q ss_pred hccccchhhhHHHHhhhcccccHHHHHHHHHHHH-------hhC------------CCchHHHHHHHHhccccCCCcCCc
Q psy8182 239 YNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIR-------NHG------------CKSLVREIVREISAMEDGNENAGQ 299 (827)
Q Consensus 239 ~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~-------~~~------------~~~l~~~ilreI~~~~~~d~~~D~ 299 (827)
|-.+....-+++.+|.- +.+.++.|.+...+.. .++ ..+++..+++-|. . .+.
T Consensus 810 ~~~s~~ia~klld~Ls~-~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t------~~~ 881 (1030)
T KOG1967|consen 810 HPESSEIAEKLLDLLSG-PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-T------APG 881 (1030)
T ss_pred CcccchHHHHHHHhcCC-ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-c------CCc
Confidence 34445566678887776 4444566666554433 111 2244555555443 1 122
Q ss_pred hhhhHHHHHHHHHHHHhHHHH-HhhHHHHHHh----hcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy8182 300 DSSKMIAAFLNEVAAHGAEYV-IPAMEELLLN----LEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVL 374 (827)
Q Consensus 300 ~g~k~~s~FL~~Lae~~P~l~-l~~is~l~~~----Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L 374 (827)
..--+|=+-|..+=.+.|+-+ +|++..|+++ |+.+.-..|-+.++++--.+... +.+. .+.-+.++-.|
T Consensus 882 ~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~---~tL~---t~~~~Tlvp~l 955 (1030)
T KOG1967|consen 882 SQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES---ETLQ---TEHLSTLVPYL 955 (1030)
T ss_pred cchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc---cccc---hHHHhHHHHHH
Confidence 223356667777777888765 6777666555 78899999999999988766532 1111 23446666666
Q ss_pred HH--hhcccc-hhHHHHHHHHHHHHHhCCCCChH----HHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy8182 375 LD--HMHDVH-TFVRTKVLQLFQRLVLDKAIPVA----FTLKLLERAIGRLMDKSSNVVKYTVQL 432 (827)
Q Consensus 375 ~e--r~~D~n-~~vRskvLq~~~~L~~~~~iP~~----~~~~v~~~av~RL~DKSs~VRk~Ai~L 432 (827)
.. +=+|-| .-||=-|||++.-|-+- .|.+ ++..|++..+--|.||--.|||.|+.-
T Consensus 956 Lsls~~~~n~~~~VR~~ALqcL~aL~~~--~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 956 LSLSSDNDNNMMVVREDALQCLNALTRR--LPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhcCCCCCcchhHHHHHHHHHHHHHhcc--CCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 54 445554 78999999999999982 2433 467899999999999999999999863
No 84
>KOG1242|consensus
Probab=67.54 E-value=92 Score=37.26 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccc
Q psy8182 303 KMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVH 382 (827)
Q Consensus 303 k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n 382 (827)
+.+......+....+..++ ..+.++++...|..|...--.++-++... ....-.-..|++.|.+-+.|.+
T Consensus 118 ~~l~~~~~~~~~~~~~~~l---~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-------~i~~~~~~~~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 118 TCLPPLVVLSKGLSGEYVL---ELLLELLTSTKIAERAGAAYGLAGLVNGL-------GIESLKEFGFLDNLSKAIIDKK 187 (569)
T ss_pred HHhhhHHHHhhccCHHHHH---HHHHHHhccccHHHHhhhhHHHHHHHcCc-------HHhhhhhhhHHHHHHHHhcccc
Confidence 3334444444444444444 45667778888888877666555444321 1112344789999999999999
Q ss_pred hhHHH-HHHHHHHHHHh-CCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh-CCCCC
Q psy8182 383 TFVRT-KVLQLFQRLVL-DKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES-NPFAA 444 (827)
Q Consensus 383 ~~vRs-kvLq~~~~L~~-~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~-nPf~~ 444 (827)
+|-|- -+++.+...|. .+.--..+...++-.+....-||..-||.+|..-.++++.. +|||-
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 99988 59999999998 45433445678999999999999999999999999999885 66873
No 85
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.15 E-value=27 Score=32.49 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHH---HHHHHHHHh----hc--CCCChHHHHHHHHHHHHH
Q psy8182 368 DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFT---LKLLERAIG----RL--MDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 368 d~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~---~~v~~~av~----RL--~DKSs~VRk~Ai~Ll~~l 436 (827)
....+.|..|+.+.|+.+--|||.++..|+.++.-|.... ..++.-.+. .. .|.+..||+.+.+|+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999986553331 112221111 11 356889999999998763
No 86
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=65.02 E-value=55 Score=30.10 Aligned_cols=75 Identities=21% Similarity=0.196 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHHHHhh
Q psy8182 365 EQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSS---NVVKYTVQLLKTMIES 439 (827)
Q Consensus 365 ~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs---~VRk~Ai~Ll~~ll~~ 439 (827)
.+...+...+....+|.+.=.|-.+.+++.+||+.+.+.......-.....+.++|.+. .+..+.-++++.++..
T Consensus 32 ~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~~ 109 (113)
T smart00544 32 EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLISD 109 (113)
T ss_pred cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHHc
Confidence 36778888999999998877789999999999999988888888888889999999876 5777777777777654
No 87
>COG2733 Predicted membrane protein [Function unknown]
Probab=65.00 E-value=76 Score=36.11 Aligned_cols=135 Identities=12% Similarity=0.161 Sum_probs=88.8
Q ss_pred HHHHHHHHHhh--cccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCC
Q psy8182 368 DEYLNVLLDHM--HDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAK 445 (827)
Q Consensus 368 d~ll~~L~er~--~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~ 445 (827)
+.++|.+..+. -+.+..+|.-+=++..++.+.+. | .+ ....++.=+.||+ ++.++..++..++. .| .++
T Consensus 182 q~l~D~~~~~L~r~~~~~~v~~~i~~~i~r~~~ee~-p-~f---~~~~~~~~v~~~~--I~~a~~~~~D~v~~-~p-~h~ 252 (415)
T COG2733 182 QALLDKLIDRLIRWLLNDKVREFIAAVIVRYLEEEH-P-LF---APIIIVSLVGKRD--ISDAVNSFLDEVRR-DP-DHK 252 (415)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-c-cc---hhhhhHHHHhhch--HHHHHHHHHHHHHh-Cc-Ccc
Confidence 56666666665 46778888888889999988642 4 12 2223344455555 99999999999888 55 344
Q ss_pred CChhHH------HHhhhhhhhhhhhHhhhhhhcCCCCc--hhhhhhhhhH-HHhhhccccccHHHHHHHHHHHHHH
Q psy8182 446 ATTQYY------VQAELTLEEFNERIKDCFEALDNDGP--MFILENFDTL-YSMLTHFKSIEYKILHNVYTKLLLR 512 (827)
Q Consensus 446 L~~~~~------v~ev~~l~ei~~~L~e~~~Al~~e~~--~~i~e~FD~l-ySll~~~~~l~~~~~~~l~~~~l~~ 512 (827)
++.+.- +..++.-+++..+.+++...+...+. .+..+.+.++ -.+...+.+=++..+..+. ..+.+
T Consensus 253 ~rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~~~~~~~~i~~~~~~~w~~~~~~l~~D~e~~~s~l~~~l~-~~~~~ 327 (415)
T COG2733 253 MRKDFDRFLFDLIDDLYHDPGMAARAEAIKSYLKEDEAIATAAGDMWTSLSEWLKEDYESEDSMLRKRLA-RAVQS 327 (415)
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH-HHHHH
Confidence 444432 66666667788888888866632222 2457777777 4555666777777888887 66543
No 88
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=63.23 E-value=74 Score=35.32 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHhCCC--------------CChHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 369 EYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKA--------------IPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 369 ~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~--------------iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
.|+..|..-+. .||.+|.-||.-+.+-..... +|.. -.-+++.-..-|+|.+.+|+|+++-||.
T Consensus 173 ~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~Llv~al~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 173 YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD-PGLLVRALCACLEDENILVQRGFLDLLL 250 (307)
T ss_pred HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC-ccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34444444444 578889999998877665432 2221 2457778888899999999999999985
Q ss_pred HHHhhCCCC
Q psy8182 435 TMIESNPFA 443 (827)
Q Consensus 435 ~ll~~nPf~ 443 (827)
. +=|..
T Consensus 251 ~---~~PL~ 256 (307)
T PF04118_consen 251 S---HFPLD 256 (307)
T ss_pred H---hCCCC
Confidence 4 55654
No 89
>KOG0213|consensus
Probab=62.30 E-value=1.8e+02 Score=35.96 Aligned_cols=216 Identities=14% Similarity=0.207 Sum_probs=141.9
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccc-cHHHHHHHHHHHHhhCCCchHH
Q psy8182 203 VANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHL-VSPLAQAVVMFIRNHGCKSLVR 281 (827)
Q Consensus 203 ~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl-~~~~Ae~v~~l~~~~~~~~l~~ 281 (827)
..|+||.+||.=. .-++++|.+..+-+|-..|--|-. .+-..++.+|.-.|-= -..-+=++...+|-++.=++..
T Consensus 923 WMRIcfeLlelLk---ahkK~iRRaa~nTfG~IakaIGPq-dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLP 998 (1172)
T KOG0213|consen 923 WMRICFELLELLK---AHKKEIRRAAVNTFGYIAKAIGPQ-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLP 998 (1172)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHhcCHH-HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhH
Confidence 5688999998662 356788888777777766654422 1334455555433321 1111123344455555557777
Q ss_pred HHHHHHhccccCCCcCC-chhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCc
Q psy8182 282 EIVREISAMEDGNENAG-QDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLS 360 (827)
Q Consensus 282 ~ilreI~~~~~~d~~~D-~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~ 360 (827)
.++.|- ..|+ .+- ....|+.|-|+.-..+..-+.+..-..+|-+-|-.+--.=|.--..++.+|......-. +
T Consensus 999 almneY--rtPe--~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g--~ 1072 (1172)
T KOG0213|consen 999 ALMNEY--RTPE--ANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTG--C 1072 (1172)
T ss_pred HHHhhc--cCch--hHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcC--c
Confidence 777763 1222 233 34469999999999999999998877788887877777888887777777776533221 1
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8182 361 DEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 361 ~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~l 436 (827)
...--.+++.+.--+.|-+|+| +|.|..=+|.=+.-++- +.++.-...-|---+..|||.=-+.+..+
T Consensus 1073 ---eda~iHLLN~iWpNIle~sPhv----iqa~~e~~eg~r~~Lg~-~~~~~Y~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1073 ---EDALIHLLNLIWPNILETSPHV----IQAFDEAMEGLRVALGP-QAMLKYCLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred ---HHHHHHHHHHhhhhhcCCChHH----HHHHHHHHHHHHHHhch-HHHHHHHHHhccCcHHHHHHHHHHHHHhH
Confidence 2355789999999999999987 55555555532222222 56777788888999999999877766543
No 90
>KOG2259|consensus
Probab=61.60 E-value=40 Score=40.60 Aligned_cols=97 Identities=22% Similarity=0.127 Sum_probs=68.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q psy8182 334 ESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLER 413 (827)
Q Consensus 334 esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~ 413 (827)
.|--.|++.+...+.+=. ..+. ...-|....+.|..=++|.-+-||+.|+..+..|-+--.+|. .....
T Consensus 170 ~s~~~~~~~~~~~~~lg~--~~ss-----~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~----~~Y~~ 238 (823)
T KOG2259|consen 170 SSTGNRLLLYCFHLPLGV--SPSS-----LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK----ACYSR 238 (823)
T ss_pred ccccchHHHHHHhhhccc--CCCc-----ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccH----HHHHH
Confidence 344556655555554332 1111 122345555557777899999999999999999988444554 45667
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 414 AIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 414 av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
|+.-+.|--..|||+|+||+.-.=..+|
T Consensus 239 A~~~lsD~~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 239 AVKHLSDDYEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhcCC
Confidence 7888999999999999999998777777
No 91
>KOG2160|consensus
Probab=61.52 E-value=41 Score=37.68 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=77.9
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhh-cccchhHHHHHHHHHHHHHhCCCC
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHM-HDVHTFVRTKVLQLFQRLVLDKAI 402 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~-~D~n~~vRskvLq~~~~L~~~~~i 402 (827)
+..++.++++.+-++|-.-..++|..+..--+.++ .---..++..|...+ .|-+-.||+|||-.+..|+.++.-
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe-----~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQE-----QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHH-----HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH
Confidence 44566689999999999999999988865322211 001122444444443 788888999999999999997632
Q ss_pred ChHHHHHH--HHHHHhhcCC--CChHHHHHHHHHHHHHHhhCCCC
Q psy8182 403 PVAFTLKL--LERAIGRLMD--KSSNVVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 403 P~~~~~~v--~~~av~RL~D--KSs~VRk~Ai~Ll~~ll~~nPf~ 443 (827)
-...+.++ +..-..-|++ ++...++.|+-|++.++..++.-
T Consensus 201 g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 201 GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 22222211 3333444666 78888999999999999999863
No 92
>KOG2933|consensus
Probab=60.17 E-value=80 Score=34.92 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHH----HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcc
Q psy8182 305 IAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCT----LTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHD 380 (827)
Q Consensus 305 ~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~av----le~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D 380 (827)
.-.|+..|++--|..+.+++..++-.+=.+-=.+|.+| +.+++.|+... ++.....-|.++-.|.-|.-+
T Consensus 108 gLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l------n~~i~~~ld~lv~~Ll~ka~~ 181 (334)
T KOG2933|consen 108 GLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL------NNSIDQELDDLVTQLLHKASQ 181 (334)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhcc
Confidence 34577889999999998888877777666666677766 55677777643 223334778899999999999
Q ss_pred cchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy8182 381 VHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQL 432 (827)
Q Consensus 381 ~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~L 432 (827)
-|.|||.-|..++..++.. +-|..-...+... +.-....||.+|...
T Consensus 182 dnrFvreda~kAL~aMV~~-vtp~~~L~~L~~~----~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 182 DNRFVREDAEKALVAMVNH-VTPQKLLRKLIPI----LQHSNPRVRAKAALC 228 (334)
T ss_pred cchHHHHHHHHHHHHHHhc-cChHHHHHHHHHH----Hhhhchhhhhhhhcc
Confidence 9999999999999999985 3343333333333 677788899888643
No 93
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=59.94 E-value=2.6e+02 Score=33.85 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=133.2
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhccc-ccHHHHHHHHHHHHhhCCCchHH
Q psy8182 203 VANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEH-LVSPLAQAVVMFIRNHGCKSLVR 281 (827)
Q Consensus 203 ~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~eh-l~~~~Ae~v~~l~~~~~~~~l~~ 281 (827)
..|+||.+++.=. ..++++|.....-+|-..+--|-. .+-..++..|.-.|- .-..-+=++...++-++.=++..
T Consensus 728 WMRIcfeLvd~Lk---s~nKeiRR~A~~tfG~Is~aiGPq-dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP 803 (975)
T COG5181 728 WMRICFELVDSLK---SWNKEIRRNATETFGCISRAIGPQ-DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLP 803 (975)
T ss_pred HHHHHHHHHHHHH---HhhHHHHHhhhhhhhhHHhhcCHH-HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHH
Confidence 5688888887652 256788877766665555443311 122334444443331 11111123334444445446666
Q ss_pred HHHHHHhccccCCCcCCc-hhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCc
Q psy8182 282 EIVREISAMEDGNENAGQ-DSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLS 360 (827)
Q Consensus 282 ~ilreI~~~~~~d~~~D~-~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~ 360 (827)
.++.+- ...+ .+-. ...|+.|-|+....+.+-+.+.....+|-+-|-.+--.=|..-..++.+++... ....
T Consensus 804 ~lm~dY---~TPe-~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc---~gtg 876 (975)
T COG5181 804 TLMSDY---ETPE-ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC---PGTG 876 (975)
T ss_pred HHHhcc---cCch-hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC---CCcc
Confidence 666542 2222 2333 346999999999999999999877777777787777777877777766666432 1111
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8182 361 DEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLK 434 (827)
Q Consensus 361 ~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~ 434 (827)
+ ...--.++++|.--++|-+|+|=-.+......+.. ++.. +.++.-...-|---|+.|||.=-....
T Consensus 877 ~--eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~--~lg~---g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 877 D--EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT--VLGS---GAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred c--HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH--Hhcc---HHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 1 22445789999999999999986666665555543 2221 456777888899999999998665554
No 94
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=59.88 E-value=1e+02 Score=42.54 Aligned_cols=140 Identities=8% Similarity=0.118 Sum_probs=104.1
Q ss_pred CchhhhHHHHHHHHHHHHhHHH-----HHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHH--HHHHHHH
Q psy8182 298 GQDSSKMIAAFLNEVAAHGAEY-----VIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEA--KEQRDEY 370 (827)
Q Consensus 298 D~~g~k~~s~FL~~Lae~~P~l-----~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~--~~~rd~l 370 (827)
+..+-|.-+..|..++.-.|.. .-.-+..++.+|.+.....|...-.+++++.... .+++ .-...+.
T Consensus 622 s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~------~~~q~~~~v~~Ga 695 (2102)
T PLN03200 622 KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI------KENRKVSYAAEDA 695 (2102)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC------CHHHHHHHHHcCC
Confidence 3445566666777777666553 2234677888899999999999999999887521 1222 2245667
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q psy8182 371 LNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAF-TLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 371 l~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~-~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~ 443 (827)
+..|.+-+.+.+.=++..++..+..|+..+-.-... ....+...++=|++.+.-+|++|...|..|...+|-.
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 888888888999999999999999999974211111 2456788888899999999999999999999999843
No 95
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=59.26 E-value=11 Score=29.01 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHH
Q psy8182 368 DEYLNVLLDHMHDVHTFVRTKVLQLF 393 (827)
Q Consensus 368 d~ll~~L~er~~D~n~~vRskvLq~~ 393 (827)
..+.+.+..|+.|.+|-||..|++++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 48999999999999999999999863
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=58.69 E-value=37 Score=37.52 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=49.8
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCC
Q psy8182 323 AMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI 402 (827)
Q Consensus 323 ~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~i 402 (827)
.+..+...++++++.+|...+.++|++=. ...-..+...|.. |.|.|||..+...+.++-+.+++
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~------------~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a~ 139 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELGD------------PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERAL 139 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCC------------hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhhh
Confidence 44567788889999999999997775432 1234555555555 99999999999999999998764
Q ss_pred C
Q psy8182 403 P 403 (827)
Q Consensus 403 P 403 (827)
+
T Consensus 140 ~ 140 (335)
T COG1413 140 D 140 (335)
T ss_pred H
Confidence 4
No 97
>KOG1078|consensus
Probab=57.74 E-value=4.6e+02 Score=32.73 Aligned_cols=127 Identities=12% Similarity=0.134 Sum_probs=89.9
Q ss_pred HHHHHHHhHHHHHhhHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHhhcCCC-----c----hH-H--HH----------
Q psy8182 309 LNEVAAHGAEYVIPAMEELLLNLEKE-SYLMRNCTLTIVTELLINVYKREDL-----S----DE-A--KE---------- 365 (827)
Q Consensus 309 L~~Lae~~P~l~l~~is~l~~~Ld~e-sy~lR~avle~~g~ii~~~~~~~~~-----~----~~-~--~~---------- 365 (827)
+..|+.+.|+.-.-.|+.|...|-.| .|.--+++++++-.+|.......+. + |. + ..
T Consensus 378 i~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~E 457 (865)
T KOG1078|consen 378 IRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKE 457 (865)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 34566777777666677777665444 4999999999999999864332110 0 00 0 00
Q ss_pred -----HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q psy8182 366 -----QRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIE 438 (827)
Q Consensus 366 -----~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~ 438 (827)
.=..+.-...-|++=.|+.||+.|++++.++--+.-.| +..|..+-.+.+.|+--.||-.|--.|..+..
T Consensus 458 gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l---~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 458 GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL---LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc---cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 11345566677888899999999999999998443333 35677777888999999999999988888773
No 98
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=57.49 E-value=3.7e+02 Score=31.48 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHhhhccCCccHHHHHHHHHHHHHhHHHHHHHHHH--h--hhcC--CCCCHHHHHH
Q psy8182 39 RIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILD--N--FLSG--DSLDEELQEK 112 (827)
Q Consensus 39 ~L~~~~~~l~~~~~~~I~e~FD~l~sl~~~~~~l~~~~~~~l~~d~l~s~~~~l~~~~~--~--~l~~--~~~~~~~~~~ 112 (827)
+++++.+.+..-....|++.+....+++.+ .-|..+|.-.+ .+|..++..-..... . ++.. .....++...
T Consensus 10 a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~--~~p~e~R~~~~-~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~ 86 (464)
T PF11864_consen 10 AAEELCESIQKYPLSSIEEIWYAAKDLIDP--NQPSEARRAAL-ELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDL 86 (464)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhhcCC--CCCHHHHHHHH-HHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHH
Confidence 445555555444556677777777777755 34556677666 666655554322100 0 0000 0011122222
Q ss_pred HHHH---------------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccCc-chHhHHHHHH
Q psy8182 113 YLNV---------------VKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWD-WDFHLSNGLN 176 (827)
Q Consensus 113 ~~~~---------------lkm~~fll~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~-W~~~r~~~L~ 176 (827)
.+++ .++.-+|..|+....+.... +..+.+|.+... ..+....+ =.......+.
T Consensus 87 ~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~-------~r~~~~~~~~~~---~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 87 RLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARS-------ARRKAKKSSSSK---SKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred HHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHH-------HHHHhhcccccc---ccccccccchhhhHHHHHH
Confidence 2222 34556788888766643221 000111110000 00000001 1245667778
Q ss_pred HHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccc
Q psy8182 177 SIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGIS 244 (827)
Q Consensus 177 ~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~ 244 (827)
.+.+++..+- ...+|+++..+.+.+..+.-+. -+......+++++.+.|. ||+...
T Consensus 157 ~l~nviKfn~------~~l~e~~i~~lv~~i~~iC~~T-----s~~~di~~~L~vldaii~-y~~iP~ 212 (464)
T PF11864_consen 157 FLVNVIKFNF------NYLDEDEISSLVDQICTICKST-----SSEDDIEACLSVLDAIIT-YGDIPS 212 (464)
T ss_pred HHHHHHhcCC------CCCCHHHHHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHH-cCcCCh
Confidence 8888877554 4457788887777777775433 345666788888877766 888654
No 99
>KOG1820|consensus
Probab=57.28 E-value=2.3e+02 Score=35.67 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHhh----HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy8182 300 DSSKMIAAFLNEVAAHGAEYVIPA----MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLL 375 (827)
Q Consensus 300 ~g~k~~s~FL~~Lae~~P~l~l~~----is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~ 375 (827)
....+-+.-|..+|...+..+.+. .+.|++-+..--=.+|-+++.++-.+... ..-+.+++...
T Consensus 310 ~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------------~~l~~~~~~I~ 377 (815)
T KOG1820|consen 310 NVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------------TPLSKMSEAIL 377 (815)
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------------ccHHHHHHHHH
Confidence 334444444555555544444333 22333333333445666666665544431 13467888888
Q ss_pred HhhcccchhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q psy8182 376 DHMHDVHTFVRTKVLQLFQRLVLDK---AIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 376 er~~D~n~~vRskvLq~~~~L~~~~---~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~ 443 (827)
+..-+.||=.|.-....+.+.+... ..|..-...++...+....|+..-||++|..-+..++..|=.+
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 8899999999999999988888843 3566667899999999999999999999999999999887653
No 100
>KOG1241|consensus
Probab=57.13 E-value=1.8e+02 Score=35.94 Aligned_cols=116 Identities=10% Similarity=0.138 Sum_probs=91.8
Q ss_pred chHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHh-hhCCCChhHHhHHHHHHHHHHHHhhcc
Q psy8182 703 SLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLL-NLEKESYLMRNCTLTIVTELLINVYKR 781 (827)
Q Consensus 703 ~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~-~Ld~Esy~lR~aVlev~g~ii~~~l~~ 781 (827)
.++-.+|.-+..-+.++.-.|=+..|+-+.=|.=+|+.+-+-|++++=-++. ++.+++..=|-|-+=++|-+.. +
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~----g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE----G 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc----C
Confidence 4566666666665666667788899999999999999999999998777776 7999999999998888887764 2
Q ss_pred CCCChH-HHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHhhcC
Q psy8182 782 EDLSDE-AKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLECWQ 824 (827)
Q Consensus 782 ~~~~e~-~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~lc~~ 824 (827)
.++. .+....+-+.-++.=..|.+=+||.-+=.++.++||-
T Consensus 395 --p~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 395 --PEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred --CchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 2333 3445566677777777799999999999999999984
No 101
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=56.94 E-value=24 Score=31.00 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=55.5
Q ss_pred hCcchhhHHHHHHHHhhhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHH
Q psy8182 664 YNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVA 738 (827)
Q Consensus 664 y~h~~~~~~~IiqlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~La 738 (827)
|.+...+-..|++.++.|+.+.+|+.|.+..+ ..+++.-|+=-|+..+++..-+- --..| =+.|..|..||
T Consensus 6 hsnP~~vf~~il~Qie~YdNli~~vVe~~ky~-t~l~~DvL~~~ll~~L~~~~r~~--~k~dg-~~~s~Wlq~La 76 (77)
T PF11732_consen 6 HSNPLIVFDVILSQIESYDNLIEPVVESLKYF-TDLGYDVLTFCLLERLSNPGRSR--LKDDG-TNISQWLQSLA 76 (77)
T ss_pred ccCcHHHHHHHHHHHHHhhhhHHHHHHHHhhc-chhhHHHHHHHHHHHHhcccchh--cCcCC-CCHHHHHHHHh
Confidence 77888888999999999999999999998777 77888888888999998533221 11223 67888888776
No 102
>KOG1991|consensus
Probab=54.85 E-value=5.7e+02 Score=32.74 Aligned_cols=254 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred ccchhhhHHHHhhhccccc------HHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhh--hHHHHHHHHHH
Q psy8182 242 GISCTVKIVQLLKNCEHLV------SPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSS--KMIAAFLNEVA 313 (827)
Q Consensus 242 ~~~~~~~IiqlL~~~ehl~------~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~--k~~s~FL~~La 313 (827)
++|+-.+|..+|.-.|..+ +++.--+....-+-+...+.+|++.=+....+. +++-++. .=+-..+.-+-
T Consensus 615 A~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~--~~~Isp~mW~ll~li~e~~~ 692 (1010)
T KOG1991|consen 615 ASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL--SKEISPIMWGLLELILEVFQ 692 (1010)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh--hcccCHHHHHHHHHHHHHHh
Q ss_pred HHhHHHHHhhHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q psy8182 314 AHGAEYVIPAMEELLLN--LEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQ 391 (827)
Q Consensus 314 e~~P~l~l~~is~l~~~--Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq 391 (827)
+-.-..+-..|-.|-.+ .+..+..=+---+++|-+|+...+++++.+|+.-..--.+++.+.
T Consensus 693 ~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii---------------- 756 (1010)
T KOG1991|consen 693 DDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVII---------------- 756 (1010)
T ss_pred hhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhhhhHhhhh
Q psy8182 392 LFQRLVLDKAIPVAFTLKLLERAIGRLMD--KSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERIKDCF 469 (827)
Q Consensus 392 ~~~~L~~~~~iP~~~~~~v~~~av~RL~D--KSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~~~L~e~~ 469 (827)
|-..| .+-.+....+++|++||.+ +++..|.-++++...-+-.|| .+++..+.+.-....=..--.....
T Consensus 757 ----L~~kg-~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP---~ltL~iLe~~~~~~~ff~~wf~~~~ 828 (1010)
T KOG1991|consen 757 ----LNCKG-LLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNP---KLTLGILENQGFLNNFFTLWFQFIN 828 (1010)
T ss_pred ----HHhcC-cHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCc---HHHHHHHHHcCCcccHHHHHHHHHH
Q ss_pred hhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy8182 470 EALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDN 523 (827)
Q Consensus 470 ~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~ 523 (827)
.-.+..+..---=-.-++.++- ..+.++..+..++. ..+...+.+|...+..
T Consensus 829 ~~~~~HDkKlcvL~l~tli~l~-~~~~~~~e~l~~l~-~~lv~L~~~Lp~ala~ 880 (1010)
T KOG1991|consen 829 QFKKVHDKKLCVLGLLTLISLG-QDPQLPSEVLGQLG-PALVELLLSLPEALAE 880 (1010)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc-ccCCchHHHHHHHH-HHHHHHHHHHHHHHHH
No 103
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=52.72 E-value=1.6e+02 Score=29.44 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=51.5
Q ss_pred CCCcchhHHHHHHHHHHH---HhHHHHHhhHHHHHhhhCC-------CChhHHhHHHHHHHHHHHHhhccCCCChHHHHH
Q psy8182 722 AGQDSSKMIAAFLNEVAA---HGAEYVIPAMEELLLNLEK-------ESYLMRNCTLTIVTELLINVYKREDLSDEAKEQ 791 (827)
Q Consensus 722 ~Ds~g~K~~s~FL~~Lae---~~P~lvl~~~s~L~~~Ld~-------Esy~lR~aVlev~g~ii~~~l~~~~~~e~~k~~ 791 (827)
.+-.-.++..+||.+|-. ..+..++.-+..++..+.. .+..+=+.+++.||.-+.. +..+..
T Consensus 91 ~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~--------~~~~~~ 162 (200)
T smart00543 91 SDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLER--------EKSPKL 162 (200)
T ss_pred HhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcC--------cccHHH
Confidence 344567889999988654 3456788878888877655 2333444566667666643 334566
Q ss_pred HHHHHHHHHHhcCcC
Q psy8182 792 RDEYLNVLLDHMHDV 806 (827)
Q Consensus 792 rd~~ld~L~er~~D~ 806 (827)
-+.+++.++.-+.+.
T Consensus 163 ~~~~l~~l~~~~~~~ 177 (200)
T smart00543 163 LDEILERLQDYLLKK 177 (200)
T ss_pred HHHHHHHHHHHHhcc
Confidence 788888888888765
No 104
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=52.51 E-value=24 Score=32.64 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHhHHHHHHHHHHHHhhccCCCChHHHHH--HHHHHHHHHHhc--CcCChhhhhHHHHHHHHhhcCC
Q psy8182 763 MRNCTLTIVTELLINVYKREDLSDEAKEQ--RDEYLNVLLDHM--HDVHTFVRTKVSTEKKLECWQP 825 (827)
Q Consensus 763 lR~aVlev~g~ii~~~l~~~~~~e~~k~~--rd~~ld~L~er~--~D~nayVRsKvlq~~~~lc~~~ 825 (827)
+|..+|.++||+.- ++ .+.+... .++ +..+..+. -|-|||.|=.++=..+-||+.|
T Consensus 2 ~K~~lvrlianl~~---~~---~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 2 FKRDLVRLIANLCY---KN---KEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred cHHHHHHHHHHHHh---CC---HHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 57889999999984 22 2223332 345 44554444 4899999999999999999987
No 105
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=52.13 E-value=74 Score=29.13 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChH---HHHHHHHHHHHHHhh
Q psy8182 365 EQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSN---VVKYTVQLLKTMIES 439 (827)
Q Consensus 365 ~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~---VRk~Ai~Ll~~ll~~ 439 (827)
.+...+...+.+..+|.+.=.|-.+.+++.+|+..+.++......-.......++|-..- .-.+--+++..++..
T Consensus 32 ~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~ 109 (113)
T PF02847_consen 32 SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIAD 109 (113)
T ss_dssp GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHHc
Confidence 456778888888888888888999999999999999999888887777777788777655 555666666665543
No 106
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=51.10 E-value=4.7e+02 Score=30.68 Aligned_cols=207 Identities=12% Similarity=0.113 Sum_probs=108.6
Q ss_pred chhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhh
Q psy8182 382 HTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDK-SSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEE 460 (827)
Q Consensus 382 n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DK-Ss~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~e 460 (827)
+--.|.+++.-+.+.+..- |+.-...+=..+-.=+..+ +..+|+.|.+||.+++...=-.....+..+-+.+
T Consensus 3 ~l~~R~~a~~~l~~~i~~~--~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I----- 75 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKY--PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI----- 75 (464)
T ss_pred CHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH-----
Confidence 3446777777777766653 4455566666666666655 5679999999999988765431222222222222
Q ss_pred hhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCHHHHHHHHH
Q psy8182 461 FNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLN 540 (827)
Q Consensus 461 i~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~~~~~~~~~~~~~~ 540 (827)
-.+..+ +.|+ .+-+++ ..| ..-|..+.. -
T Consensus 76 -----------~~~~~~----~d~~---------------~~l~aL-~~L----T~~Grdi~~----------------~ 104 (464)
T PF11864_consen 76 -----------SDPSND----DDFD---------------LRLEAL-IAL----TDNGRDIDF----------------F 104 (464)
T ss_pred -----------hcCCCc----hhHH---------------HHHHHH-HHH----HcCCcCchh----------------c
Confidence 011111 1121 112222 111 111111111 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcc-hhhHHHHHHHHHHHhccccccccCCCh
Q psy8182 541 VVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDW-DFHLSNGLNSIHQILKSKINKLWDPPV 619 (827)
Q Consensus 541 ~lkm~~fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W-~~~r~~~L~~l~~~L~l~l~~lw~~~~ 619 (827)
..++.-+|..|+....+..... +.. .+|+++.+.+. ....+- ...-...+..+.++++.+ ...
T Consensus 105 ~~~i~~~L~~wl~~~~~~~~~~--r~~--~~~~~~~~~~~------~~~~~~~~~~l~~ll~~l~nviKfn------~~~ 168 (464)
T PF11864_consen 105 EYEIGPFLLSWLEPSYQAARSA--RRK--AKKSSSSKSKG------LSNLDNEESNLSDLLQFLVNVIKFN------FNY 168 (464)
T ss_pred ccchHHHHHHHHHHHHHHHHHH--HHH--hhccccccccc------cccccchhhhHHHHHHHHHHHHhcC------CCC
Confidence 1346667788877777532210 000 00111111100 000011 245678888999888865 556
Q ss_pred hhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcch
Q psy8182 620 VEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGI 668 (827)
Q Consensus 620 ~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~ 668 (827)
.+|+++..+.+.+..+.=+. -+......+++++...|. ||+.-
T Consensus 169 l~e~~i~~lv~~i~~iC~~T-----s~~~di~~~L~vldaii~-y~~iP 211 (464)
T PF11864_consen 169 LDEDEISSLVDQICTICKST-----SSEDDIEACLSVLDAIIT-YGDIP 211 (464)
T ss_pred CCHHHHHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHHHH-cCcCC
Confidence 67777887777777765444 245566888888887765 77774
No 107
>KOG0368|consensus
Probab=51.07 E-value=5.7e+02 Score=34.40 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=114.4
Q ss_pred CChhhHHHHHHHHHHHHHHhcccccc------------ccchHHHHHHHHHHHHHHHHhhCcchh--hHHHHHHHHh---
Q psy8182 617 PPVVEEEFVNMVANCCYKIIEDPCIA------------SVKHKELRVFIFQIVGYLIKRYNHGIS--CTVKIVQLLK--- 679 (827)
Q Consensus 617 ~~~~ee~Fi~l~~~~~y~lLE~~~~~------------~~K~~~ir~~if~il~~~vk~y~h~~~--~~~~IiqlL~--- 679 (827)
|+..++.+.+++.+..-..-+=|.=. +.+....-....+=|.-++++|.-+.. ...-+.++|.
T Consensus 838 p~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl 917 (2196)
T KOG0368|consen 838 PPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYL 917 (2196)
T ss_pred ChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 67788888888877776544333200 012222222223334556777755543 2333335554
Q ss_pred ----hhcccchHHHHHHHHHHHhcCC------------------cchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHH
Q psy8182 680 ----NCEHLVSPLAQAVVMFIRNHGC------------------KSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEV 737 (827)
Q Consensus 680 ----~~Ehl~~~~Ae~v~~l~~~~~~------------------~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~L 737 (827)
+|+.--..-.+.+..+.+++.. +.|+-.||.+++. .+++-+-.|..-|.+|
T Consensus 918 ~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l~~-------~s~~~~~~f~~iL~~l 990 (2196)
T KOG0368|consen 918 EVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQLKP-------PSSKVSDEFRDILRKL 990 (2196)
T ss_pred HHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHhcC-------CCCCCCHHHHHHHHHH
Confidence 4443334555667777776642 2344444544442 4667777888888888
Q ss_pred HHHhHHHHHhhHHHHHhh--hCCCChhHHhHHHHHHHHHHHHhhccC---CCChHHHHHHH---HHHHHHHHhcCcCChh
Q psy8182 738 AAHGAEYVIPAMEELLLN--LEKESYLMRNCTLTIVTELLINVYKRE---DLSDEAKEQRD---EYLNVLLDHMHDVHTF 809 (827)
Q Consensus 738 ae~~P~lvl~~~s~L~~~--Ld~Esy~lR~aVlev~g~ii~~~l~~~---~~~e~~k~~rd---~~ld~L~er~~D~nay 809 (827)
+++..+. .+.+++.... +-+.||..|+.-+|-+-..=+...-.+ -..+..++-.| .-||.|.+=|.-.++-
T Consensus 991 ~~L~~~~-~~eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~lidS~~~v~dvL~~fF~H~d~~ 1069 (2196)
T KOG0368|consen 991 TELNHTN-TSEVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKELIDSNLSVFDVLPGFFYHSDPT 1069 (2196)
T ss_pred Hhhccch-HHHHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHhhccchhhHHHHHHHhhccccHH
Confidence 8887652 2333333332 445999999998885544333221111 12333444443 4789999999999999
Q ss_pred hhhHHHHHHHH
Q psy8182 810 VRTKVSTEKKL 820 (827)
Q Consensus 810 VRsKvlq~~~~ 820 (827)
|++.+++++.+
T Consensus 1070 v~~~alevYv~ 1080 (2196)
T KOG0368|consen 1070 VSSAALEVYVR 1080 (2196)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 108
>KOG2140|consensus
Probab=49.36 E-value=2e+02 Score=34.19 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=71.9
Q ss_pred hhHHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHh---ccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhh
Q psy8182 247 VKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREIS---AMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPA 323 (827)
Q Consensus 247 ~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~---~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~ 323 (827)
-+|||.=-.-....+..|.+++.+.. +.|++++-+++++- .+.|+ .+|-..--|++.|+..|-...-.-=+-.
T Consensus 201 rsv~~aq~asp~ft~vyaALvAviNs--kfP~IgElLlkrLilqf~r~f~--RnDk~~c~~~~kfiahLinq~VahEIv~ 276 (739)
T KOG2140|consen 201 RSVMQAQAASPGFTPVYAALVAVINS--KFPQIGELLLKRLILQFKRSFR--RNDKVSCLNASKFIAHLINQQVAHEIVA 276 (739)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHcc--CCchHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444444566777888888776 45889999998873 34566 6788888999999988765433221112
Q ss_pred HHHHHHhhc---CCCchHHHHHHHHHHHHHHHHhh
Q psy8182 324 MEELLLNLE---KESYLMRNCTLTIVTELLINVYK 355 (827)
Q Consensus 324 is~l~~~Ld---~esy~lR~avle~~g~ii~~~~~ 355 (827)
+..|.-+|+ +.|..+=.|++..||-.+..+..
T Consensus 277 Leil~lLLe~PTddSvevaI~flkecGakL~~VSp 311 (739)
T KOG2140|consen 277 LEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSP 311 (739)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhCh
Confidence 333444455 48899999999999988876643
No 109
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=49.20 E-value=2.7e+02 Score=27.45 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=67.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhCCC-CChHH-HH
Q psy8182 332 EKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDV-HTFVRTKVLQLFQRLVLDKA-IPVAF-TL 408 (827)
Q Consensus 332 d~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~-n~~vRskvLq~~~~L~~~~~-iP~~~-~~ 408 (827)
++.-+..+.+++|..|+++-..-++.+ .+...+.+...+..+.++-... ++.+=++.-.++..+-+++. ..+.. ..
T Consensus 39 ~~~~~~~~~~~le~y~ei~~~aWk~a~-~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~ 117 (152)
T PF12422_consen 39 KCQIPQVSKSVLELYGEILFRAWKKAS-KDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLL 117 (152)
T ss_pred HHHcccccHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHH
Confidence 333488899999999999988877652 2333345555666666666555 66666777777777777761 11111 12
Q ss_pred HHHHHH-HhhcCCCChHHHHHHHHHHHH
Q psy8182 409 KLLERA-IGRLMDKSSNVVKYTVQLLKT 435 (827)
Q Consensus 409 ~v~~~a-v~RL~DKSs~VRk~Ai~Ll~~ 435 (827)
++.+-. -+.|+-..+.||.||..++..
T Consensus 118 rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 118 RLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 222222 244888999999999998854
No 110
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.35 E-value=1.5e+02 Score=32.25 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHh-HHHHHhhHHHHHHhhcCCCchHH
Q psy8182 261 SPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHG-AEYVIPAMEELLLNLEKESYLMR 339 (827)
Q Consensus 261 ~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~-P~l~l~~is~l~~~Ld~esy~lR 339 (827)
.-.|+.+..++++.+.++|+ .|+.-.+...+.+ .-.=.+....-+.+.. |+.-...++.|+.+|+|..-.+|
T Consensus 133 ~~~A~~La~~a~~~~~~~La-~il~~ya~~~fr~------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 133 IEIAEALAQVAEAQGLPNLA-RILSSYAKGRFRD------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHhcCCCC------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 46788888889999999887 5666666655431 1112233344455655 88878889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8182 340 NCTLTIVTELLINV 353 (827)
Q Consensus 340 ~avle~~g~ii~~~ 353 (827)
..+++++-.++..+
T Consensus 206 ~~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 206 RKTLQILKVLLPHV 219 (262)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999888764
No 111
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=47.40 E-value=3e+02 Score=27.40 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhh-
Q psy8182 364 KEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK--AIPVAFTLKLLERAIGRLMD-KSSNVVKYTVQLLKTMIES- 439 (827)
Q Consensus 364 ~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~--~iP~~~~~~v~~~av~RL~D-KSs~VRk~Ai~Ll~~ll~~- 439 (827)
+...+.+...+...+.+.++|.|-..+.+..-+|+.+ -+-.+.....++....-|+. -+..+.+.|+..|+.++..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5567888888888899999999999999999999986 23334445566666666655 4457899999999999864
Q ss_pred CCCCCCCChhHHHHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccc
Q psy8182 440 NPFAAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSI 497 (827)
Q Consensus 440 nPf~~~L~~~~~v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l 497 (827)
.+| +.| .+|+..+. ++.-+..+..-+.+ ........+.+..++.++.+.
T Consensus 100 ~~~-p~l-----~Rei~tp~-l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 100 RGK-PTL-----TREIATPN-LPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred cCC-Cch-----HHHHhhcc-HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 332 333 33443322 44444444433322 334567888888888877655
No 112
>KOG2025|consensus
Probab=47.38 E-value=6.5e+02 Score=31.24 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=87.0
Q ss_pred hhhhHHHHHHHHHHHHhHH------HHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy8182 300 DSSKMIAAFLNEVAAHGAE------YVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNV 373 (827)
Q Consensus 300 ~g~k~~s~FL~~Lae~~P~------l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~ 373 (827)
+.|..+-.|+.++-+-.|. ++-+-+..++...++..-++|--|+++++-++-... +.+| .-=|.+.+.
T Consensus 57 si~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~---eidd---~vfn~l~e~ 130 (892)
T KOG2025|consen 57 SIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA---EIDD---DVFNKLNEK 130 (892)
T ss_pred CcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc---ccCH---HHHHHHHHH
Confidence 3344444555555554442 566667888999999999999999999986654111 1111 245788888
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q psy8182 374 LLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKT 435 (827)
Q Consensus 374 L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ 435 (827)
|..|+.|.-|-||--|+-++.++-+...=|.-....+....++ .|-|+-|||+|+.-+..
T Consensus 131 l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~liq--nDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 131 LLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLIQ--NDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh--cCCcHHHHHHHHHhhcc
Confidence 9999999999999999999999996422222222222222222 79999999999866643
No 113
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=46.91 E-value=1.2e+02 Score=30.11 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=58.5
Q ss_pred cCCCcchhHHHHHHHHHHHH---hHHHHHhhHHHHHhhhCC--------CChhHHhHHHHHHHHHHHHhhccCCCChHHH
Q psy8182 721 NAGQDSSKMIAAFLNEVAAH---GAEYVIPAMEELLLNLEK--------ESYLMRNCTLTIVTELLINVYKREDLSDEAK 789 (827)
Q Consensus 721 ~~Ds~g~K~~s~FL~~Lae~---~P~lvl~~~s~L~~~Ld~--------Esy~lR~aVlev~g~ii~~~l~~~~~~e~~k 789 (827)
..+..-.++...|+.+|=.. .++.++.-+..++..... ++..+=|.++..||.-+. .++..+
T Consensus 97 ~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~-------~~~~~~ 169 (209)
T PF02854_consen 97 QSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLE-------NSEESP 169 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHH-------HCHHHH
T ss_pred HHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHh-------cCCCch
Confidence 34566788899999998775 688888888888888766 445555667777887776 345567
Q ss_pred HHHHHHHHHHHHhcCc
Q psy8182 790 EQRDEYLNVLLDHMHD 805 (827)
Q Consensus 790 ~~rd~~ld~L~er~~D 805 (827)
+.-+.||+.++.-...
T Consensus 170 ~~l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 170 KALDEIFERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7888999998888776
No 114
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=45.51 E-value=1.9e+02 Score=31.34 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=50.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHH-------HHhhhhhhhhhhhHhhhhh--hcCCCCchhhhhhhhhH
Q psy8182 417 RLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYY-------VQAELTLEEFNERIKDCFE--ALDNDGPMFILENFDTL 487 (827)
Q Consensus 417 RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~-------v~ev~~l~ei~~~L~e~~~--Al~~e~~~~i~e~FD~l 487 (827)
-|-|-...+|.+|+.+|+..|..=| ...|+.++. ........-+...+..+.. .+..=.+....+....+
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp-~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLP-PDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCC-HhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHH
Confidence 4555566666677777776666666 233444333 2222222222222222211 11110111123333333
Q ss_pred HHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHh
Q psy8182 488 YSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILD 522 (827)
Q Consensus 488 ySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~ 522 (827)
++-+ +..+++.+.|..++ .++...+++....+.
T Consensus 86 ~~~~-~~q~~~q~~R~~~~-~ll~~l~~~~~~~l~ 118 (262)
T PF14500_consen 86 FQNV-DVQSLPQSTRYAVY-QLLDSLLENHREALQ 118 (262)
T ss_pred HHhC-ChhhhhHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 3322 34678888899888 888777777665553
No 115
>KOG3687|consensus
Probab=45.50 E-value=4.4e+02 Score=33.71 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=70.4
Q ss_pred HHHHhh--cccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh-----hcCCCChHHHHHHHHHHHHHHhh---CCC
Q psy8182 373 VLLDHM--HDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIG-----RLMDKSSNVVKYTVQLLKTMIES---NPF 442 (827)
Q Consensus 373 ~L~er~--~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~-----RL~DKSs~VRk~Ai~Ll~~ll~~---nPf 442 (827)
.|.+|+ .|.++-||-|++-++..+...+.=- +-.+++..++- ---||+..||+.+-++|..+... |.|
T Consensus 432 ~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~--yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~ 509 (1697)
T KOG3687|consen 432 ALMERFFRSESRGAVRIKVLDVLSFVLLINRQF--YEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHF 509 (1697)
T ss_pred HHHHHHHHhcccceEEEeeHHHHHHHHhhhhhh--hHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcc
Confidence 344444 2788999999999988877643111 11233333332 24699999999999999998875 223
Q ss_pred CCCCChhHHHHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccc----cccHHHHHHHHHHHH
Q psy8182 443 AAKATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFK----SIEYKILHNVYTKLL 510 (827)
Q Consensus 443 ~~~L~~~~~v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~----~l~~~~~~~l~~~~l 510 (827)
..-|+.-+- -......-++.|+|..-++-. ..+.++.+..-.+++-+. .+|.....|++ ..+
T Consensus 510 ~~lldi~EA--~~~rs~s~~~~l~e~~~~~~~---a~~~dI~~aVlgll~~~A~kl~~lP~~ha~~v~-~~l 575 (1697)
T KOG3687|consen 510 NSLLDIIEA--VMARSLSPPPELEERDVAAYS---ASLEDIKTAVLGLLVILATKLYTLPASHATRVY-EML 575 (1697)
T ss_pred hhHHHHHHH--HHhcccCCCcchhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHhccCchHHHHHHH-HHH
Confidence 222222111 111112223344444422211 123444444444454444 37777777777 665
No 116
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.56 E-value=1.6e+02 Score=32.01 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHh-HHHHHhhHHHHHhhhCCCChhHH
Q psy8182 686 SPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHG-AEYVIPAMEELLLNLEKESYLMR 764 (827)
Q Consensus 686 ~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~-P~lvl~~~s~L~~~Ld~Esy~lR 764 (827)
.-.|+.+..++++.+.++|+ .|++-.+...|.+ .-.=.+....-+.+.. |+.-...++.|+..|+|..--+|
T Consensus 133 ~~~A~~La~~a~~~~~~~La-~il~~ya~~~fr~------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 133 IEIAEALAQVAEAQGLPNLA-RILSSYAKGRFRD------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHhcCCCC------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 46788888899999999987 7778777666531 1111233334455665 89999999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q psy8182 765 NCTLTIVTELLINV 778 (827)
Q Consensus 765 ~aVlev~g~ii~~~ 778 (827)
..+++++--++..+
T Consensus 206 ~~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 206 RKTLQILKVLLPHV 219 (262)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998764
No 117
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=3.1e+02 Score=32.62 Aligned_cols=76 Identities=26% Similarity=0.280 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy8182 364 KEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPF 442 (827)
Q Consensus 364 ~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf 442 (827)
+.-|..++++|+.--+|---|||++++...-+|.+.+ |... ..++.+-+..|-||-.-|--.|=-+|-+|=..||=
T Consensus 186 k~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~--peqe-~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~ 261 (821)
T COG5593 186 KNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEAR--PEQE-VNLLHLFINKLGDKRDKVSSKASYVILKLELLHPG 261 (821)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC--hHHH-HHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCc
Confidence 4567888899999999999999999999999999874 7544 78999999999999999998998899998889994
No 118
>KOG1820|consensus
Probab=43.12 E-value=2.4e+02 Score=35.55 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=88.0
Q ss_pred HHHHhhHH-HHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q psy8182 318 EYVIPAME-ELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRL 396 (827)
Q Consensus 318 ~l~l~~is-~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L 396 (827)
.-+++++. .+...+-++-+..|+..+|.+..++...- .+ ..+.--+-+.-.+.-|.-|.|..|=..++|.+..|
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~----~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~i 322 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KE----IVKGYTGLLGILLKIRLKDANINVVMLAAQILELI 322 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cc----cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 33444443 34444778899999999999998887643 11 01111234445556677999999999999999999
Q ss_pred HhCCC-CChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 397 VLDKA-IPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 397 ~~~~~-iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
+..-. --..+...+......|+.||-+.||-.+...+.+++..+|
T Consensus 323 a~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~ 368 (815)
T KOG1820|consen 323 AKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP 368 (815)
T ss_pred HHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc
Confidence 99543 3344456788999999999999999999999999988555
No 119
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=42.92 E-value=38 Score=34.28 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhh-CCCCCCCChhHHHHh
Q psy8182 386 RTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRL-MDKSSNVVKYTVQLLKTMIES-NPFAAKATTQYYVQA 454 (827)
Q Consensus 386 RskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL-~DKSs~VRk~Ai~Ll~~ll~~-nPf~~~L~~~~~v~e 454 (827)
|..|++.|.+|++.+.|---....+...|..|. +++-+ =+||+++|+.+|.. ++ ...+..++.+.
T Consensus 18 k~~vi~~W~eiv~~~~i~av~~~~Fi~~aa~~f~q~~q~--~~Na~~~I~~il~~k~~--~~iT~~Df~~F 84 (181)
T PF11422_consen 18 KRNVISIWEEIVQNHGIFAVSLDFFIKKAANRFKQPSQS--LKNAIQVIQYILTPKNT--NVITIPDFYKF 84 (181)
T ss_dssp HHHHHHHHHHHHSSSS--EEEHHHHHHHHHHHHS-TTS---HHHHHHHHHHHS--SS---SEEEHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeeHHHHHHHHHHHhcccccc--ccchHHHHHHHHcCCCC--ceeeHHHHHHH
Confidence 789999999999977655444566788888998 66544 48899999988764 34 35555565443
No 120
>KOG0915|consensus
Probab=42.61 E-value=1e+03 Score=32.19 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHH
Q psy8182 671 TVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAME 750 (827)
Q Consensus 671 ~~~IiqlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s 750 (827)
+..-++.++.--.=+.||=|.+..+...-|+..| ++++-++++.--.. --...-=++|.|++-|+.++|.-|-|.-.
T Consensus 1200 e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vL-eelip~l~el~R~s--Vgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSPMMETINKCINYIDISVL-EELIPRLTELVRGS--VGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhcc--CCCCcchhHHHHHHHHHHHhccccCcchh
Confidence 3444455555555567888888888777666555 56666666653331 12222236899999999999999988876
Q ss_pred HHHhh----hCCCChhHHhHHHHHHHHHHH
Q psy8182 751 ELLLN----LEKESYLMRNCTLTIVTELLI 776 (827)
Q Consensus 751 ~L~~~----Ld~Esy~lR~aVlev~g~ii~ 776 (827)
.|+.. +-+-+=+.|.+.=-+||.++.
T Consensus 1277 Kll~al~~g~~dRNesv~kafAsAmG~L~k 1306 (1702)
T KOG0915|consen 1277 KLLRALFPGAKDRNESVRKAFASAMGYLAK 1306 (1702)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHh
Confidence 66655 456777888888888888875
No 121
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=41.34 E-value=6e+02 Score=29.11 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q psy8182 336 YLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAI 415 (827)
Q Consensus 336 y~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av 415 (827)
=.+|..+++++.+=... +++ ..-...-.+.-.|+..|.+|..=.+.+. ...+++. + ...+++.++
T Consensus 202 ~~l~~~il~~i~~~fl~-~~~-~~p~p~l~~vL~fl~~Ll~~~~~~~~~~-------~~~~~~~---~---lp~lL~c~~ 266 (373)
T PF14911_consen 202 EELRKFILQVIRSNFLE-FKG-SAPPPRLASVLAFLQQLLKRLQRQNENQ-------ILTLLRL---V---LPSLLECLM 266 (373)
T ss_pred hHHHHHHHHHHHHHHhc-CCC-CCCCCcHHHHHHHHHHHHHhcCcccchh-------HHHHHHH---h---hHHHHHHHh
Confidence 35677777766655443 222 1122334556667777777754111111 0011111 1 123444443
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhCCCC
Q psy8182 416 GRLMDKSSNVVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 416 ~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~ 443 (827)
-- |-...|||.|..++..++.+--|+
T Consensus 267 ~v--~e~~~~k~~a~e~l~~mv~~~~~~ 292 (373)
T PF14911_consen 267 LV--NEEPQVKKLATELLQYMVESCQVG 292 (373)
T ss_pred hc--CCCcchhHHHHHHHHHHHHccccc
Confidence 22 445799999999999988766554
No 122
>KOG1078|consensus
Probab=41.05 E-value=6.7e+02 Score=31.40 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc-----CCC----chH-------------
Q psy8182 305 IAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKR-----EDL----SDE------------- 362 (827)
Q Consensus 305 ~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~-----~~~----~~~------------- 362 (827)
.+.=++.|....|+.+.|-++.|..+|++..-.+|.|-+-++-++-...-.. -++ +|.
T Consensus 265 aArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLL 344 (865)
T KOG1078|consen 265 AARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLL 344 (865)
T ss_pred HHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHH
Confidence 3455677888899999999999999999999999999998888765442110 010 111
Q ss_pred ---HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHH-HHHHHHHHHHHHh
Q psy8182 363 ---AKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNV-VKYTVQLLKTMIE 438 (827)
Q Consensus 363 ---~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~V-Rk~Ai~Ll~~ll~ 438 (827)
.....+++...+--=++|++-=----|++....||.. .|..+ ..++.-..+-|.+++..= -|+.+.-+..+++
T Consensus 345 KTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~--fp~k~-~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie 421 (865)
T KOG1078|consen 345 KTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK--FPRKH-TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIE 421 (865)
T ss_pred HhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh--ccHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 1346677777777777777766555678888888876 56544 556666666666665544 4556688999999
Q ss_pred hCCCCCCCChhHHHHhhhh
Q psy8182 439 SNPFAAKATTQYYVQAELT 457 (827)
Q Consensus 439 ~nPf~~~L~~~~~v~ev~~ 457 (827)
.||=+....++.+|+....
T Consensus 422 ~~pdsKe~~L~~LCefIED 440 (865)
T KOG1078|consen 422 ENPDSKERGLEHLCEFIED 440 (865)
T ss_pred hCcchhhHHHHHHHHHHHh
Confidence 9998877777878766543
No 123
>KOG0212|consensus
Probab=40.73 E-value=3.6e+02 Score=32.42 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCC-h---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh---h
Q psy8182 367 RDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIP-V---AFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIE---S 439 (827)
Q Consensus 367 rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP-~---~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~---~ 439 (827)
.+.|.-+|-||+++.|||+|--++.- .+..+. +| . ++...+..---.-|.|-|--||.-+=.+|+.+|. +
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~W-l~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSW-LYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHH-HHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999988864 444443 34 2 2334566666677999999999988888877765 5
Q ss_pred CCC
Q psy8182 440 NPF 442 (827)
Q Consensus 440 nPf 442 (827)
.|=
T Consensus 242 ~P~ 244 (675)
T KOG0212|consen 242 SPS 244 (675)
T ss_pred Ccc
Confidence 663
No 124
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=40.38 E-value=7.7e+02 Score=30.12 Aligned_cols=243 Identities=11% Similarity=0.134 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCc--chhhHHHHHHHHHHHhccccccc
Q psy8182 537 KYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWD--WDFHLSNGLNSIHQILKSKINKL 614 (827)
Q Consensus 537 ~~~~~lkm~~fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~--W~~~r~~~L~~l~~~L~l~l~~l 614 (827)
-..+.+..|.+...|++...+.... .+ .+++.+-.- .......|. -+--.+.+++.+.-+.+.+
T Consensus 245 ~~~~~~~F~~~~~~wL~~~~~~~~~-------~~-~~~~~~~Pl--p~~~p~~f~~lPE~~iedi~d~~~f~~~~~---- 310 (629)
T PF10408_consen 245 FLSRCLQFYNFVAQWLLRLADPSNQ-------YP-ENKPPKLPL--PEEPPPQFAYLPEFFIEDIVDFLLFLRRFN---- 310 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT---------TT-S-S---S-S--S----TTGGGSBTHHHHHHHHHHHHHTTST----
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-------cc-ccCCcCCCC--CCCCChHHHhCCHHHHHHHHHHHHHHHHhc----
Confidence 3456778899999999987732110 00 000000000 000011121 1233788888887777764
Q ss_pred cCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhC-cchhhHHHHHHHHh-hhcccchHHHHHH
Q psy8182 615 WDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYN-HGISCTVKIVQLLK-NCEHLVSPLAQAV 692 (827)
Q Consensus 615 w~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~-h~~~~~~~IiqlL~-~~Ehl~~~~Ae~v 692 (827)
-.|......-+.-+...|-.+|.+|. ++||+.+|..+-++|-..+...+ ...+....++..-. .-+||.+.+-.+=
T Consensus 311 ~~~~~l~~~~~~~l~~f~i~fm~s~~--~ikNP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~y 388 (629)
T PF10408_consen 311 NSPDLLSSQDLDELVTFCITFMGSPE--YIKNPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFY 388 (629)
T ss_dssp T-TTTT-T-THHHHHHHHHHHHH-TT--S---HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHH
T ss_pred CChhhhhhhhHHHHHHHHHHHhCChh--hcCCHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHH
Confidence 34555566667778888889999998 89999999999999998777765 22222222322111 2344444333332
Q ss_pred HHHH---------HhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhH
Q psy8182 693 VMFI---------RNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLM 763 (827)
Q Consensus 693 ~~l~---------~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~l 763 (827)
.... ++|++.-=+..|++.+=... .+..=+.++|+..|...++=+..|+.-. .|-+
T Consensus 389 idvE~Tg~~~qfydKFn~R~~i~~il~~lw~~~------------~~r~~~~~~~~~~~~~F~rFvn~liND~---~~ll 453 (629)
T PF10408_consen 389 IDVEKTGASTQFYDKFNIRYHISQILKYLWKNP------------EYREQFIKEAKENPPLFVRFVNMLINDT---TFLL 453 (629)
T ss_dssp HHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHSHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHhcCCCccchhcccchhhHHHHHHHHcCCH------------HHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHH
Confidence 2111 13445555667777765221 2333456666667777777776666531 1211
Q ss_pred HhHHHHHHHHHHHHhhccC------CCChHHHHHHHHHHHHHHHhcCcCChhhh
Q psy8182 764 RNCTLTIVTELLINVYKRE------DLSDEAKEQRDEYLNVLLDHMHDVHTFVR 811 (827)
Q Consensus 764 R~aVlev~g~ii~~~l~~~------~~~e~~k~~rd~~ld~L~er~~D~nayVR 811 (827)
=- .++-+++|=.-....+ .++++.++++...++..+-+..-.+.+.+
T Consensus 454 DE-~l~~L~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~ 506 (629)
T PF10408_consen 454 DE-SLSKLKEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLAN 506 (629)
T ss_dssp HH-HHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1344444433222111 23344566677777777666554444443
No 125
>KOG1061|consensus
Probab=40.31 E-value=42 Score=41.03 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=79.2
Q ss_pred hcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhHHHHHHHHHHHH
Q psy8182 698 NHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLIN 777 (827)
Q Consensus 698 ~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ii~~ 777 (827)
.+|..+|..++++-.+ .+|-.--|=+=.+|..-|..-|..-+-.+..+++-...++-++|.+-+..+|.+=+.
T Consensus 44 G~DvSslF~dvvk~~~-------T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~ 116 (734)
T KOG1061|consen 44 GKDVSSLFPDVVKCMQ-------TRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD 116 (734)
T ss_pred CcchHhhhHHHHhhcc-------cCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh
Confidence 3566677777776544 355566678888999999999999999999999999999999999998887755332
Q ss_pred hhccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHh
Q psy8182 778 VYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKLE 821 (827)
Q Consensus 778 ~l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~l 821 (827)
+-.+.+++-|..+..|.+||||..|--.+.++
T Consensus 117 ------------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl 148 (734)
T KOG1061|consen 117 ------------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL 148 (734)
T ss_pred ------------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 33456677777777777777777766655554
No 126
>KOG1058|consensus
Probab=39.37 E-value=8.7e+02 Score=30.42 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 381 VHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 381 ~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
=|-|+|.-+|..+.+|-|. .....++..+...|+-+-+.|||||+--+-++-.+
T Consensus 111 PNEyiRG~TLRFLckLkE~-----ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 111 PNEYIRGSTLRFLCKLKEP-----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred chHhhcchhhhhhhhcCcH-----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 5889999999998888775 34567888889999999999999999777665554
No 127
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.02 E-value=1.1e+02 Score=28.92 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhh---cccchhHHHHHHHHHHHHHhCCCCChHHHHHHHH--HHH---h-------hcCCCChHHHHHH
Q psy8182 365 EQRDEYLNVLLDHM---HDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLE--RAI---G-------RLMDKSSNVVKYT 429 (827)
Q Consensus 365 ~~rd~ll~~L~er~---~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~--~av---~-------RL~DKSs~VRk~A 429 (827)
.....+++.|..|+ ...+.-+-.|||+++..|+.+|. ..+...+-. ..+ . +=.|.+..||+.|
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~--~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS--ERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS---HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHH
Confidence 46678899999998 67777788899999999999883 222221110 011 1 2246777899999
Q ss_pred HHHHHHH
Q psy8182 430 VQLLKTM 436 (827)
Q Consensus 430 i~Ll~~l 436 (827)
-+++.-|
T Consensus 113 ~~i~~lL 119 (125)
T PF01417_consen 113 KEILELL 119 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888654
No 128
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=38.28 E-value=50 Score=28.99 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=52.7
Q ss_pred hccccchhhhHHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHH
Q psy8182 239 YNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVA 313 (827)
Q Consensus 239 ~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~La 313 (827)
|.+-..+-..+++-++.|+.+.++++|.+-.+ ..+++.-|+=-|+..+++..-+ .--..| -++|..|..||
T Consensus 6 hsnP~~vf~~il~Qie~YdNli~~vVe~~ky~-t~l~~DvL~~~ll~~L~~~~r~--~~k~dg-~~~s~Wlq~La 76 (77)
T PF11732_consen 6 HSNPLIVFDVILSQIESYDNLIEPVVESLKYF-TDLGYDVLTFCLLERLSNPGRS--RLKDDG-TNISQWLQSLA 76 (77)
T ss_pred ccCcHHHHHHHHHHHHHhhhhHHHHHHHHhhc-chhhHHHHHHHHHHHHhcccch--hcCcCC-CCHHHHHHHHh
Confidence 55556667789999999999999999988666 6678887887888888753332 122233 68888888887
No 129
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.14 E-value=2.6e+02 Score=33.74 Aligned_cols=190 Identities=15% Similarity=0.158 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCc--
Q psy8182 222 KELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQ-- 299 (827)
Q Consensus 222 ~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~-- 299 (827)
...|..+.++++.+=+. .+..-|.+++...+--..-.++++..+.. ....-..++|+++-.........+.
T Consensus 378 ~~~r~~~lDal~~aGT~-----~av~~i~~~I~~~~~~~~ea~~~l~~l~~--~~~~Pt~e~l~~l~~L~~~~~~~~~~~ 450 (618)
T PF01347_consen 378 EQARKIFLDALPQAGTN-----PAVKFIKDLIKSKKLTDDEAAQLLASLPF--HVRRPTEELLKELFELAKSPKVKNSPY 450 (618)
T ss_dssp HHHHHHHHHHHHHH-SH-----HHHHHHHHHHHTT-S-HHHHHHHHHHHHH--T-----HHHHHHHHHHHT-HHHHT-HH
T ss_pred HHHHHHHHHHHHHcCCH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHhCccccCChh
Confidence 45566666666443221 23345666666544444444444444433 2224445666655443322101111
Q ss_pred ---hhhhHHHHHHHHHHHH----------hHHHHHhhHHHHHHhh----cCCCchHHHHHHHHHHHHHHHHhhcCCCchH
Q psy8182 300 ---DSSKMIAAFLNEVAAH----------GAEYVIPAMEELLLNL----EKESYLMRNCTLTIVTELLINVYKREDLSDE 362 (827)
Q Consensus 300 ---~g~k~~s~FL~~Lae~----------~P~l~l~~is~l~~~L----d~esy~lR~avle~~g~ii~~~~~~~~~~~~ 362 (827)
++.=+++..+-+.... .+.+.-+-+..|.++| +.++..-+...|.++||+=.
T Consensus 451 l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------- 519 (618)
T PF01347_consen 451 LRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------
Confidence 1223444444443333 1111112222333333 34455667777777777621
Q ss_pred HHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 363 AKEQRDEYLNVLLDHMH---DVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 363 ~~~~rd~ll~~L~er~~---D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
...++.|..-+. +...++|..|++++.++... .|...+..++.+-..+=+| +-||=+|..+ |+.+
T Consensus 520 -----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--~~~~v~~~l~~I~~n~~e~--~EvRiaA~~~---lm~~ 587 (618)
T PF01347_consen 520 -----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--CPEKVREILLPIFMNTTED--PEVRIAAYLI---LMRC 587 (618)
T ss_dssp -----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---HHHHHHHHHHHHH-TTS---HHHHHHHHHH---HHHT
T ss_pred -----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--CcHHHHHHHHHHhcCCCCC--hhHHHHHHHH---HHhc
Confidence 123333444343 55999999999999988554 3655555566665555443 4599888654 4788
Q ss_pred CC
Q psy8182 440 NP 441 (827)
Q Consensus 440 nP 441 (827)
||
T Consensus 588 ~P 589 (618)
T PF01347_consen 588 NP 589 (618)
T ss_dssp --
T ss_pred CC
Confidence 88
No 130
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=37.80 E-value=3.4e+02 Score=28.67 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHhccc-cCCCcCCchhhhHHHH-HHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHH
Q psy8182 263 LAQAVVMFIRNHGCKSLVREIVREISAME-DGNENAGQDSSKMIAA-FLNEVAAHGAEYVIPAMEELLLNLEKESYLMRN 340 (827)
Q Consensus 263 ~Ae~v~~l~~~~~~~~l~~~ilreI~~~~-~~d~~~D~~g~k~~s~-FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~ 340 (827)
+|..+.-+.+.... -+.+++.-|++.- .. +...+++.|. +|..|.+.----+.+-...+.+.| ++.-|-
T Consensus 104 ~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~----~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l---~~~~rp 174 (234)
T PF12530_consen 104 IAASIRDICCSRPD--HGVDLLPLLSGCLNQS----CDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL---SLDYRP 174 (234)
T ss_pred HHHHHHHHHHhChh--hHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc---CCccch
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccc-------hhHHHHHHHHH
Q psy8182 341 CTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVH-------TFVRTKVLQLF 393 (827)
Q Consensus 341 avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n-------~~vRskvLq~~ 393 (827)
.|+..+.+++.-+-.+.-..+++.+....++..|.+...... ++||..|+..+
T Consensus 175 ~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~al 234 (234)
T PF12530_consen 175 LVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEAL 234 (234)
T ss_pred HHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhcC
No 131
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.64 E-value=1.5e+02 Score=27.45 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=52.1
Q ss_pred HHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhccCCCC
Q psy8182 706 REIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLS 785 (827)
Q Consensus 706 ~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~aVlev~g~ii~~~l~~~~~~ 785 (827)
...+.||+..-.. ....+...+.....+|....|+.+++.+.+|=-. +.=||+-+.....
T Consensus 18 ~~~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l------------vkN~g~~f~~~i~----- 77 (115)
T cd00197 18 WPLIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC------------VKNCGERFHQEVA----- 77 (115)
T ss_pred HHHHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH------------HHHccHHHHHHHH-----
Confidence 4567777776532 2223344445555677888888998888766432 2333433332222
Q ss_pred hHHHHHHHHHHHHHH------HhcCcCChhhhhHHHHHHHHh
Q psy8182 786 DEAKEQRDEYLNVLL------DHMHDVHTFVRTKVSTEKKLE 821 (827)
Q Consensus 786 e~~k~~rd~~ld~L~------er~~D~nayVRsKvlq~~~~l 821 (827)
+..|+..|. ..-.|.+..||.|++++....
T Consensus 78 ------~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 78 ------SNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred ------HhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 233444442 123478999999999987654
No 132
>KOG1949|consensus
Probab=36.63 E-value=2.1e+02 Score=35.12 Aligned_cols=166 Identities=13% Similarity=0.150 Sum_probs=106.2
Q ss_pred CchhhhHHHHHHHHHHHHhHHHHHhh-HHHHHHhhcC-CCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy8182 298 GQDSSKMIAAFLNEVAAHGAEYVIPA-MEELLLNLEK-ESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLL 375 (827)
Q Consensus 298 D~~g~k~~s~FL~~Lae~~P~l~l~~-is~l~~~Ld~-esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~ 375 (827)
-+.|.+.++.-..+.=+..|..++.. |.-+..-+.- .+-.+|++|++.+..|.-....- -.-..+|-.|-
T Consensus 237 RS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh--------~~le~~Lpal~ 308 (1005)
T KOG1949|consen 237 RSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH--------PLLEQLLPALR 308 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch--------hHHHHHHHhcc
Confidence 46788899999999999999887543 4444444332 33499999999999887543221 12233444444
Q ss_pred HhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHH-HHHHHHHHHHHHhhCCCCCCCChhHHHHh
Q psy8182 376 DHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNV-VKYTVQLLKTMIESNPFAAKATTQYYVQA 454 (827)
Q Consensus 376 er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~V-Rk~Ai~Ll~~ll~~nPf~~~L~~~~~v~e 454 (827)
--++|.+.=||..+.|++.+|-.-+++..-. .--+..+..||+--+.-| ||-++-++-.++--| + ..+.|++.
T Consensus 309 ~~l~D~se~VRvA~vd~ll~ik~vra~~f~~-I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~----k-~ee~~c~R 382 (1005)
T KOG1949|consen 309 YSLHDNSEKVRVAFVDMLLKIKAVRAAKFWK-ICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN----K-PEEVWCER 382 (1005)
T ss_pred hhhhccchhHHHHHHHHHHHHHhhhhhhhhc-cccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC----C-cHHHHHHH
Confidence 4569999999999999999998877654211 122455777777655555 444444444433222 2 77888888
Q ss_pred hhhhhhhhhhH-hhhhhhcCCCCc
Q psy8182 455 ELTLEEFNERI-KDCFEALDNDGP 477 (827)
Q Consensus 455 v~~l~ei~~~L-~e~~~Al~~e~~ 477 (827)
...+=+.+..- ..+..-+.|-..
T Consensus 383 c~tlv~~n~~A~~rf~~~l~~~~~ 406 (1005)
T KOG1949|consen 383 CVTLVQMNHAAARRFYQYLHEHTA 406 (1005)
T ss_pred HHHHHccCHHHHHHHHHHhcccch
Confidence 88877765433 444444444443
No 133
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=35.98 E-value=8.9e+02 Score=29.57 Aligned_cols=344 Identities=13% Similarity=0.181 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccCc-c-hHhHHHHHHHHHHHhcchhhcc
Q psy8182 112 KYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWD-W-DFHLSNGLNSIHQILKSKINKL 189 (827)
Q Consensus 112 ~~~~~lkm~~fll~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~-W-~~~r~~~L~~l~~~L~l~l~~l 189 (827)
-..+.+..|.+...|++...+.... .+. +++.+-.- .......|. . +--.+.+++.+.-+.+.+
T Consensus 245 ~~~~~~~F~~~~~~wL~~~~~~~~~-------~~~-~~~~~~Pl--p~~~p~~f~~lPE~~iedi~d~~~f~~~~~---- 310 (629)
T PF10408_consen 245 FLSRCLQFYNFVAQWLLRLADPSNQ-------YPE-NKPPKLPL--PEEPPPQFAYLPEFFIEDIVDFLLFLRRFN---- 310 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT---------TTS--S---S-S--S----TTGGGSBTHHHHHHHHHHHHHTTST----
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-------ccc-cCCcCCCC--CCCCChHHHhCCHHHHHHHHHHHHHHHHhc----
Confidence 3566788889999999877732110 000 00000000 000112231 1 233777777777776664
Q ss_pred cCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhc-cccchhhhHHHHhhhcccccHHHHHHHH
Q psy8182 190 WDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYN-HGISCTVKIVQLLKNCEHLVSPLAQAVV 268 (827)
Q Consensus 190 w~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~-~~~~~~~~IiqlL~~~ehl~~~~Ae~v~ 268 (827)
-.|......-+.-++..|-.+|.+|..+ |+..+|..+-++|-..+...+ ...+.... .+..+++..+.++..+.
T Consensus 311 ~~~~~l~~~~~~~l~~f~i~fm~s~~~i--kNP~LraklvevL~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~sLm 385 (629)
T PF10408_consen 311 NSPDLLSSQDLDELVTFCITFMGSPEYI--KNPHLRAKLVEVLFSLLPPDRDGRRGVLGS---LFESHPLAQEHLVPSLM 385 (629)
T ss_dssp T-TTTT-T-THHHHHHHHHHHHH-TTS-----HHHHHHHHHHHHHCCS--TTS---TTHH---HHHH-HHHHCCHHHHHH
T ss_pred CChhhhhhhhHHHHHHHHHHHhCChhhc--CCHHHHHHHHHHHHHhcCcccccccccHHH---HHHcCHHHHHHHHHHHH
Confidence 2344445555666777788899999855 999999999999977666555 22222222 33333444444444444
Q ss_pred HHHHh-------------hCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCC
Q psy8182 269 MFIRN-------------HGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKES 335 (827)
Q Consensus 269 ~l~~~-------------~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~es 335 (827)
.+.-+ |++..=+..|++.+=.. ..+..=+.++|+..|..+++=+..|+.- -.
T Consensus 386 ~~yidvE~Tg~~~qfydKFn~R~~i~~il~~lw~~------------~~~r~~~~~~~~~~~~~F~rFvn~liND---~~ 450 (629)
T PF10408_consen 386 KFYIDVEKTGASTQFYDKFNIRYHISQILKYLWKN------------PEYREQFIKEAKENPPLFVRFVNMLIND---TT 450 (629)
T ss_dssp HHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHSHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHhcCCCccchhcccchhhHHHHHHHHcCC------------HHHHHHHHHHHHhhhHHHHHHHHHHHHH---HH
Confidence 33332 22222334444444211 1222335566666777776666555432 11
Q ss_pred chHHHHHHHHHHHHHHHHhhcCC------CchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHH-H
Q psy8182 336 YLMRNCTLTIVTELLINVYKRED------LSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFT-L 408 (827)
Q Consensus 336 y~lR~avle~~g~ii~~~~~~~~------~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~-~ 408 (827)
|-+=. .++.+++|=......++ .+++.++++...++..+.+..-...+.+ ..+.++..|.+. +|..+. .
T Consensus 451 ~llDE-~l~~L~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~-~t~~~l~~lt~~--~~~~Fl~~ 526 (629)
T PF10408_consen 451 FLLDE-SLSKLKEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLAN-ETLKMLNYLTSE--IPEPFLRP 526 (629)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---GGGGCSH
T ss_pred HHHHH-HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh--CchhhhhH
Confidence 21111 23444443322221111 2344567788888888888877777775 467777777775 555552 2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhhhhH----------hhhhhhcCCCCch
Q psy8182 409 KLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERI----------KDCFEALDNDGPM 478 (827)
Q Consensus 409 ~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~~~L----------~e~~~Al~~e~~~ 478 (827)
.++...++-|. = .|..|+ -|=..+|....-.+---.++++-..| ++++.|+..++..
T Consensus 527 elv~RlA~MLn-------~----~L~~L~--Gpk~~~LkVk~~~~y~F~P~~ll~~i~~iy~~l~~~~~F~~ava~D~Rs 593 (629)
T PF10408_consen 527 ELVDRLAAMLN-------Y----NLDQLV--GPKCSELKVKNPEKYGFDPKELLSQIVDIYLNLSDSDKFVQAVANDGRS 593 (629)
T ss_dssp HHHHHHHHHHH-------H----HHHHHH--SHHHHT---SSGGGGT--HHHHHHHHHHHHHHCTT-HHHHHHHHH-TTT
T ss_pred HHHHHHHHHHH-------H----HHHHHc--CCchhcccCCChhhcCCcHHHHHHHHHHHHhhcCCchHHHHHHHhCCCC
Confidence 33332222211 0 011111 11111233333333333444444433 5577787777777
Q ss_pred hhhhhhhhHHHhhhccccccHHHHHHHH
Q psy8182 479 FILENFDTLYSMLTHFKSIEYKILHNVY 506 (827)
Q Consensus 479 ~i~e~FD~lySll~~~~~l~~~~~~~l~ 506 (827)
+-++.|+...++++...-+++....+.-
T Consensus 594 y~~~lf~~a~~~l~~~~l~~~~~i~~f~ 621 (629)
T PF10408_consen 594 YSPELFEKAVRILRRIGLKSEDEIEKFE 621 (629)
T ss_dssp --HHHHHHHHHHHTTSTSSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8899999999999998877777655544
No 134
>KOG4653|consensus
Probab=35.76 E-value=5.5e+02 Score=32.45 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 369 EYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDK-AIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 369 ~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~-~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
.-++.-.+-+||--+-+|+-+|+.+.++.+++ .-|+-...+|+.++..-|+|+-+.|==|||+.+..|-+-.|
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~ 800 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP 800 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc
Confidence 34566666788999999999999999999965 44555567999999999999999999999999888877654
No 135
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.91 E-value=82 Score=34.73 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhcCCCchHH----HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHH--
Q psy8182 333 KESYLMRNCTLTIVTELLINVYKREDLSDEA----KEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAF-- 406 (827)
Q Consensus 333 ~esy~lR~avle~~g~ii~~~~~~~~~~~~~----~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~-- 406 (827)
+..-.....|+..+++|+...- ...+-. +......+..+..+..=-..|+.-++..+++.|...+.-+...
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~---~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~ 144 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDP---SRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV 144 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SS---SSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH
Confidence 4556666777777777665321 111111 1011114444444443348999999999999999976544332
Q ss_pred ---HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy8182 407 ---TLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPF 442 (827)
Q Consensus 407 ---~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf 442 (827)
...++......+...++.+..-|++.|..++...+|
T Consensus 145 ~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~ 183 (312)
T PF03224_consen 145 KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY 183 (312)
T ss_dssp HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence 345555555666666777888999999998876665
No 136
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.84 E-value=64 Score=23.99 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=24.8
Q ss_pred HHHHHhhhCCCChhHHhHHHHHHHHHH
Q psy8182 749 MEELLLNLEKESYLMRNCTLTIVTELL 775 (827)
Q Consensus 749 ~s~L~~~Ld~Esy~lR~aVlev~g~ii 775 (827)
+..|+++|.+++..+|...+.++|||-
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 778899999999999999999999984
No 137
>KOG2956|consensus
Probab=33.60 E-value=8.6e+02 Score=28.70 Aligned_cols=189 Identities=10% Similarity=0.182 Sum_probs=100.8
Q ss_pred HhHHHHHHHHHHHhcchhhcccCCCcchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcccc--chh
Q psy8182 169 FHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGI--SCT 246 (827)
Q Consensus 169 ~~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~--~~~ 246 (827)
+++..++..|..++.-.-..+| |.+..-+.-.+|..|-+. ++..+|...+++|.-+.+.-.-.+ ++.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvW------eq~f~~iL~~l~EvL~d~-----~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVW------EQHFAEILLLLLEVLSDS-----EDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHH------HHHHHHHHHHHHHHHccc-----hhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 4455566666666666666666 333444444455555443 577888899999988776522111 222
Q ss_pred hhHHHHhhhcccc----cHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHH--HHHHHHHHhHHHH
Q psy8182 247 VKIVQLLKNCEHL----VSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAA--FLNEVAAHGAEYV 320 (827)
Q Consensus 247 ~~IiqlL~~~ehl----~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~--FL~~Lae~~P~l~ 320 (827)
..|...|...-.. ....+|.+......++.-+=+.-|-.-|-. ..-|++++. .+.+|-+..+.--
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt---------~D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT---------ADEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc---------CcchHHHHHHHHHHHHHhhcCHHH
Confidence 3444444322211 122334444444445444333222222211 112343333 3566665555432
Q ss_pred H-----hhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHH---HHHHHHHHHHHHHhh
Q psy8182 321 I-----PAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEA---KEQRDEYLNVLLDHM 378 (827)
Q Consensus 321 l-----~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~---~~~rd~ll~~L~er~ 378 (827)
+ .-+..+++-+||.|=++|+++|=|+..|+..+= .++..... ....-.++++=..|.
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG-~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG-MEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh-HHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 2 224567778999999999999999999998651 12222221 134455666666665
No 138
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=33.44 E-value=3.5e+02 Score=27.01 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=64.7
Q ss_pred hHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q psy8182 279 LVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKRED 358 (827)
Q Consensus 279 l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~ 358 (827)
...+|+.++.++-... .++ ..-.|..-|..+....|-.|+.+.+.+...||.=+|.=.......+.-+.- ..+-+
T Consensus 52 ~r~~Ile~l~~rI~~~--s~~-~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~P-Li~~s- 126 (158)
T PF14676_consen 52 IRSEILEQLLNRIVTK--SSS-PSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLP-LIKFS- 126 (158)
T ss_dssp GHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHH-HHTT--
T ss_pred HHHHHHHHHHHHHHhc--Ccc-chhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcC-
Confidence 3345555555544431 222 234689999999999999999999999999998655444444444443333 22221
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q psy8182 359 LSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLF 393 (827)
Q Consensus 359 ~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~ 393 (827)
..-||.++-.|--.+.-.-.-+|.-|+..+
T Consensus 127 -----~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 127 -----PSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp -----HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 357899998888888777777777776654
No 139
>KOG1077|consensus
Probab=33.32 E-value=1e+03 Score=29.56 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHH---HHHHHHHHHHh-
Q psy8182 198 EFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSP---LAQAVVMFIRN- 273 (827)
Q Consensus 198 ~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~---~Ae~v~~l~~~- 273 (827)
+|..-|..=++++|=+++.+ -.||+ .+...+..+++.++.+.++ ....++++.++
T Consensus 142 e~~ea~~~DI~KlLvS~~~~----------------~~vkq-----kaALclL~L~r~spDl~~~~~W~~riv~LL~D~~ 200 (938)
T KOG1077|consen 142 EMAEAFADDIPKLLVSGSSM----------------DYVKQ-----KAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQH 200 (938)
T ss_pred hHHHHhhhhhHHHHhCCcch----------------HHHHH-----HHHHHHHHHHhcCccccChhhHHHHHHHHhCccc
Q ss_pred hCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHH-------------hHHHHHhhHHHHHHhhcCCCchHHH
Q psy8182 274 HGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAH-------------GAEYVIPAMEELLLNLEKESYLMRN 340 (827)
Q Consensus 274 ~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~-------------~P~l~l~~is~l~~~Ld~esy~lR~ 340 (827)
++...-+..++.-|+.+.+. +.-+.-++.+++..--.... +|=+..+-+..|..+=--|--.-|-
T Consensus 201 ~gv~ta~~sLi~~lvk~~p~--~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~ 278 (938)
T KOG1077|consen 201 MGVVTAATSLIEALVKKNPE--SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA 278 (938)
T ss_pred cceeeehHHHHHHHHHcCCH--HHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH
Q ss_pred HHHHHHHHHHHHHh---hcCCC-------------------chHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh
Q psy8182 341 CTLTIVTELLINVY---KREDL-------------------SDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVL 398 (827)
Q Consensus 341 avle~~g~ii~~~~---~~~~~-------------------~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~ 398 (827)
.+.||+-.|+.+.= +..+. -|+..+...+.-+.|-.=+-+.-+..|.-+|....+||.
T Consensus 279 ~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s 358 (938)
T KOG1077|consen 279 RLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLAS 358 (938)
T ss_pred HHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHh
Q ss_pred -CCCCChHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q psy8182 399 -DKAIPVAFTLKLLERAIGRLM-DKSSNVVKYTVQLLKTM 436 (827)
Q Consensus 399 -~~~iP~~~~~~v~~~av~RL~-DKSs~VRk~Ai~Ll~~l 436 (827)
..++-.-+.+ .+.++..|. +|-+.|||.|+-||=++
T Consensus 359 s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 359 SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHH
No 140
>KOG1242|consensus
Probab=33.00 E-value=9.6e+02 Score=29.03 Aligned_cols=378 Identities=16% Similarity=0.144 Sum_probs=186.2
Q ss_pred HHHHHhhHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q psy8182 317 AEYVIPAMEELLLNLEKE-SYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQR 395 (827)
Q Consensus 317 P~l~l~~is~l~~~Ld~e-sy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~ 395 (827)
-+.+..-+...-+.|++. .|.|||+++--.|-+-.. +.+.+ .....+.+.|.+-.--.++|||..+..++..
T Consensus 50 ~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~-~~~~d------~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~ 122 (569)
T KOG1242|consen 50 DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFH-LQIVD------PRPISIIEILLEELDTPSKSVQRAVSTCLPP 122 (569)
T ss_pred HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHh-ccccC------cchhHHHHHHHHhcCCCcHHHHHHHHHHhhh
Confidence 333333344445556654 589999999888854433 33222 2346677778888888999999999999988
Q ss_pred HHh-CCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHH---------HHhhhhhhhhhhhH
Q psy8182 396 LVL-DKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYY---------VQAELTLEEFNERI 465 (827)
Q Consensus 396 L~~-~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~---------v~ev~~l~ei~~~L 465 (827)
+.- ....+.......+..-.+ .+|.+. |+.|..=+..++.+++- -.+....+ -++-..-++ ..+
T Consensus 123 ~~~~~~~~~~~~~l~~l~~ll~--~~~~~~-~~~aa~~~ag~v~g~~i-~~~~~~~~l~~l~~ai~dk~~~~~re--~~~ 196 (569)
T KOG1242|consen 123 LVVLSKGLSGEYVLELLLELLT--STKIAE-RAGAAYGLAGLVNGLGI-ESLKEFGFLDNLSKAIIDKKSALNRE--AAL 196 (569)
T ss_pred HHHHhhccCHHHHHHHHHHHhc--cccHHH-HhhhhHHHHHHHcCcHH-hhhhhhhHHHHHHHHhcccchhhcHH--HHH
Confidence 776 334554444443333333 445444 55555555665655542 11111111 111111111 111
Q ss_pred hhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCHHHHHHHHHHHHHH
Q psy8182 466 KDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMT 545 (827)
Q Consensus 466 ~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~~~~~~~~~~~~~~~~~~~~lkm~ 545 (827)
-.+..+...-++..=|-+-..+++++..|+...+.+|.... +-.....+. ..+++--
T Consensus 197 ~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~-~a~kai~~~----------------------~~~~aVK 253 (569)
T KOG1242|consen 197 LAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAV-EAAKAIMRC----------------------LSAYAVK 253 (569)
T ss_pred HHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHH-HHHHHHHHh----------------------cCcchhh
Confidence 11111111222322344556667777777777777777665 433211111 1111111
Q ss_pred HHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcchhhHHHHHHHHHHHhccccccccCC-ChhhHHH
Q psy8182 546 LWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDP-PVVEEEF 624 (827)
Q Consensus 546 ~fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r~~~L~~l~~~L~l~l~~lw~~-~~~ee~F 624 (827)
.+|.. .+...+...= |.|. .+.+-.+....-=..|....+..+...+ .+.+|.| +-+++.+
T Consensus 254 ~llps-ll~~l~~~kW----------rtK~----aslellg~m~~~ap~qLs~~lp~iiP~l---sevl~DT~~evr~a~ 315 (569)
T KOG1242|consen 254 LLLPS-LLGSLLEAKW----------RTKM----ASLELLGAMADCAPKQLSLCLPDLIPVL---SEVLWDTKPEVRKAG 315 (569)
T ss_pred Hhhhh-hHHHHHHHhh----------hhHH----HHHHHHHHHHHhchHHHHHHHhHhhHHH---HHHHccCCHHHHHHH
Confidence 11111 1111110000 0000 0000000000000122333333333222 3567888 6688999
Q ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcccchHHHHHHHHHHHhcCCcch
Q psy8182 625 VNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSL 704 (827)
Q Consensus 625 i~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l 704 (827)
+.++++.|- .++||. |..++=+++.-++|...-...=++.|-.......- +-++|
T Consensus 316 ~~~l~~~~s-vidN~d------------I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V------------~~psL 370 (569)
T KOG1242|consen 316 IETLLKFGS-VIDNPD------------IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEV------------DAPSL 370 (569)
T ss_pred HHHHHHHHH-hhccHH------------HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeee------------cchhH
Confidence 999998874 345553 44455556666667663333333333222222211 12333
Q ss_pred HHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHh--HHHHHhhHHHHHhhhCCCChhH----HhHHHHHHHHHHHH
Q psy8182 705 VREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHG--AEYVIPAMEELLLNLEKESYLM----RNCTLTIVTELLIN 777 (827)
Q Consensus 705 ~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~--P~lvl~~~s~L~~~Ld~Esy~l----R~aVlev~g~ii~~ 777 (827)
.||-.|-+...++ +++.--|.-+.-.--++.+. |.-+.+-+..|++-|++-.++- |--.--++|-++..
T Consensus 371 --almvpiL~R~l~e--Rst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 371 --ALMVPILKRGLAE--RSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred --HHHHHHHHHHHhh--ccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 2333444444443 44444477777777888888 8888888888888888777766 54444455555543
No 141
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=32.94 E-value=7.1e+02 Score=27.54 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHH--HHhHHHHHhhHHHHHHhh-c-CCCchHHHHHHHHHHHHHHHHhhcCCCchHHH---HHHHHHHHH
Q psy8182 301 SSKMIAAFLNEVA--AHGAEYVIPAMEELLLNL-E-KESYLMRNCTLTIVTELLINVYKREDLSDEAK---EQRDEYLNV 373 (827)
Q Consensus 301 g~k~~s~FL~~La--e~~P~l~l~~is~l~~~L-d-~esy~lR~avle~~g~ii~~~~~~~~~~~~~~---~~rd~ll~~ 373 (827)
+.|-++.+...|. +-...++-.-...|.+.+ | +.+...|.+++.++|- +.. +.+.+ .+... +..+.+|..
T Consensus 106 A~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai-~~f-v~~~d-~~~~~~~~~~le~if~~ 182 (309)
T PF05004_consen 106 AARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAI-CTF-VGGSD-EEETEELMESLESIFLL 182 (309)
T ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHH-HHH-hhcCC-hhHHHHHHHHHHHHHHH
Confidence 4466666666654 444555544444555553 3 3567899999999994 332 33333 22222 344444443
Q ss_pred HHHhhccc---------chhHHHHHHHHHHHHHhCCCCChHHHH----HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhC
Q psy8182 374 LLDHMHDV---------HTFVRTKVLQLFQRLVLDKAIPVAFTL----KLLERAIGRLMDKSSNVVKYTVQLLKTMIESN 440 (827)
Q Consensus 374 L~er~~D~---------n~~vRskvLq~~~~L~~~~~iP~~~~~----~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~n 440 (827)
..-. -|- ++=+.+.||+.|.=|... +|..... ..+..-+.-|+-....||.+|=.-|.-+-+-.
T Consensus 183 ~~~~-~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~--~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 183 SILK-SDGNAPVVAAEDDAALVAAALSAWALLLTT--LPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HhcC-cCCCcccccCCCccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3322 222 256899999999999864 4553333 34445555677788999999988887766654
Q ss_pred C
Q psy8182 441 P 441 (827)
Q Consensus 441 P 441 (827)
.
T Consensus 260 ~ 260 (309)
T PF05004_consen 260 R 260 (309)
T ss_pred h
Confidence 4
No 142
>KOG0368|consensus
Probab=32.06 E-value=1.4e+03 Score=31.04 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=106.4
Q ss_pred CCcchhHHHHHHHHHHHHHhcccccc------------ccccHHHHHHHHHHHHHHHHHhccccchh--hhHHHHhh---
Q psy8182 192 PPVVEEEFVNMVANCCYKIIEDPCIA------------SVKHKELRVFIFQIVGYLIKRYNHGISCT--VKIVQLLK--- 254 (827)
Q Consensus 192 ~~~~ee~Fi~l~~~~~~~lLE~~~~~------------~~K~~~~r~~if~il~~~vk~~~~~~~~~--~~IiqlL~--- 254 (827)
|+..++.+-+++.+.+-..-+-|.-. +.+....-....+=|.-++++|.-+...- .-+.++|.
T Consensus 838 p~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl 917 (2196)
T KOG0368|consen 838 PPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYL 917 (2196)
T ss_pred ChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 55566777777766665443333100 11222222223333455667775554332 22344543
Q ss_pred ----hcccccHHHHHHHHHHHHhhCC------------------CchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHH
Q psy8182 255 ----NCEHLVSPLAQAVVMFIRNHGC------------------KSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEV 312 (827)
Q Consensus 255 ----~~ehl~~~~Ae~v~~l~~~~~~------------------~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~L 312 (827)
+|+.--.+-++.+..+.+++.. +.|+-.||.+++. .+++-+-.|..-|.+|
T Consensus 918 ~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l~~-------~s~~~~~~f~~iL~~l 990 (2196)
T KOG0368|consen 918 EVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQLKP-------PSSKVSDEFRDILRKL 990 (2196)
T ss_pred HHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHhcC-------CCCCCCHHHHHHHHHH
Confidence 3442233445566666665542 1455555555543 2556666777777788
Q ss_pred HHHhHHHHHhhHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhhcCC---CchHHHHH---HHHHHHHHHHhhcccchh
Q psy8182 313 AAHGAEYVIPAMEELLLN--LEKESYLMRNCTLTIVTELLINVYKRED---LSDEAKEQ---RDEYLNVLLDHMHDVHTF 384 (827)
Q Consensus 313 ae~~P~l~l~~is~l~~~--Ld~esy~lR~avle~~g~ii~~~~~~~~---~~~~~~~~---rd~ll~~L~er~~D~n~~ 384 (827)
+++....- ..+++.... +-+.||..|+.-+|.+-..=+...-.+- ..+..++- --..||.|..=|.-.++-
T Consensus 991 ~~L~~~~~-~eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~lidS~~~v~dvL~~fF~H~d~~ 1069 (2196)
T KOG0368|consen 991 TELNHTNT-SEVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKELIDSNLSVFDVLPGFFYHSDPT 1069 (2196)
T ss_pred HhhccchH-HHHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHhhccchhhHHHHHHHhhccccHH
Confidence 87765522 233333332 4469999999999866544332211110 11222222 235788888888888999
Q ss_pred HHHHHHHHHHH
Q psy8182 385 VRTKVLQLFQR 395 (827)
Q Consensus 385 vRskvLq~~~~ 395 (827)
|++.|++++.+
T Consensus 1070 v~~~alevYv~ 1080 (2196)
T KOG0368|consen 1070 VSSAALEVYVR 1080 (2196)
T ss_pred HHHHHHHHHHH
Confidence 99999999877
No 143
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=32.06 E-value=7.9e+02 Score=27.76 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=102.8
Q ss_pred HHHHHHHHhhCcchhhHHHHHHHHhhh-----cccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhH
Q psy8182 655 QIVGYLIKRYNHGISCTVKIVQLLKNC-----EHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKM 729 (827)
Q Consensus 655 ~il~~~vk~y~h~~~~~~~IiqlL~~~-----Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~ 729 (827)
+|++.+++-. ...+.+.+|..-|..- -|+..|+-++-..+.+.-....-+.++++-|+.-..+ -+++|.|.
T Consensus 133 ~Ii~~L~~~~-~~~~l~~~i~~tL~~gi~~~p~~~~~PfLrAalvfce~s~~~~~v~~li~~Va~~~~s---l~~~~G~~ 208 (337)
T PF12030_consen 133 SIIKRLLRAS-PDAGLQDSIFKTLEEGIRGQPAQLCDPFLRAALVFCERSPDADRVQDLIRHVAKQVRS---LQNAEGRA 208 (337)
T ss_pred HHHHHHHhCC-cccchHHHHHHHHHcccccCchhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc---cccCCcHh
Confidence 5566655442 1123445555444321 3345566677777777777777788888888875433 45568888
Q ss_pred HHHHHHHHHHH-----------hHHHHHhhHHHHHhh-hCCCChhHHhHHHHHHHHHHHHhhccCCCChHH-------HH
Q psy8182 730 IAAFLNEVAAH-----------GAEYVIPAMEELLLN-LEKESYLMRNCTLTIVTELLINVYKREDLSDEA-------KE 790 (827)
Q Consensus 730 ~s~FL~~Lae~-----------~P~lvl~~~s~L~~~-Ld~Esy~lR~aVlev~g~ii~~~l~~~~~~e~~-------k~ 790 (827)
|=.|+..+-.. .+..++.++..=.|. |.-.-=.+|+.+.+-+.+++-..-.++..+|.. |+
T Consensus 209 fL~Ff~~ll~~~n~~~~~~~~~~~~~~le~ip~WAP~LL~y~d~~VR~~Te~fL~~~lF~~~~~~~~~d~~~~~~~~~R~ 288 (337)
T PF12030_consen 209 FLDFFRGLLNLRNERIGEDRAWFLSLVLERIPDWAPGLLGYPDRSVRNGTEDFLQELLFSKEAEDDDEDTRQRYREIARQ 288 (337)
T ss_pred HHHHHHHHHhCcCccccccHHHHHHHHHHcccccchHhhCCCchhHHHHHHHHHHHHhCCCCccccChHHHHHHHHHHHH
Confidence 98898877521 233455555554554 444444899999999999877544333332221 22
Q ss_pred HHHHHHHHHHHhcCcC-ChhhhhHHHHHHHHhhc
Q psy8182 791 QRDEYLNVLLDHMHDV-HTFVRTKVSTEKKLECW 823 (827)
Q Consensus 791 ~rd~~ld~L~er~~D~-nayVRsKvlq~~~~lc~ 823 (827)
--...++.|.+++.-- ++-|..++...+.++.+
T Consensus 289 Lg~~Cl~yLr~~yv~~~~~~v~~~~~~~i~~VI~ 322 (337)
T PF12030_consen 289 LGQACLEYLRDTYVRRRRAQVERRTVESILRVIE 322 (337)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 2378899999998875 56687777776666544
No 144
>PHA00438 hypothetical protein
Probab=32.00 E-value=74 Score=27.84 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=48.1
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcccchHHHHHHHHHH
Q psy8182 629 ANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFI 696 (827)
Q Consensus 629 ~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Ehl~~~~Ae~v~~l~ 696 (827)
.+|+-+++|||. ..+.+-.+..+.|.+ +||.++-.++-.+..|+..-+.-+++|.|+.-+.
T Consensus 2 l~pI~~~l~np~----DiPdvpraa~eyLqv---rfNasYl~~sG~i~~lR~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 2 LTPIKHLLENPN----DIPDVPRAAAEYLQV---RFNASYLEQSGEIRLLRQAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred cchHHHHhcCCc----ccccccHHHHHHHHH---HHhHHHHHHhhhHHHHHHcCCcHHHHHHHHHHHH
Confidence 468889999997 455566666666553 7899999999999999997777779999987663
No 145
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=31.88 E-value=1.9e+02 Score=27.76 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHH-------HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 369 EYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAF-------TLKLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 369 ~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~-------~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
.-...|..|+..-||.|.-.||-+|.-++.+..-|... ...+..++-.+ .-....||+.++.++...=..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 44567788888899999999999999999886555422 22333333332 124678999999999876554
No 146
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=31.88 E-value=1.8e+02 Score=29.64 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q psy8182 318 EYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLV 397 (827)
Q Consensus 318 ~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~ 397 (827)
.++-+-+..+++..-++...+|.+.+++++-++.+-+..+. ..+-.|..=.-|-|+++|.+|.+++..|.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~----------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK----------QCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH----------HHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 45666777888888889999999999999999987776653 45666666678999999999999999999
Q ss_pred hCC
Q psy8182 398 LDK 400 (827)
Q Consensus 398 ~~~ 400 (827)
+..
T Consensus 74 eK~ 76 (187)
T PF12830_consen 74 EKH 76 (187)
T ss_pred HHh
Confidence 863
No 147
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=31.00 E-value=1.4e+02 Score=26.19 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=47.7
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHHHHHHHhhhcccchHHHHHHHHHHH
Q psy8182 629 ANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIR 697 (827)
Q Consensus 629 ~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~IiqlL~~~Ehl~~~~Ae~v~~l~~ 697 (827)
.+|+-++++||. ..+.+-.+.-+.|. -+||+++..++-++..|+.--+.=.+++.|+.-+.-
T Consensus 2 L~~I~h~l~np~----DiP~ipra~aeyLq---vrfN~~yl~~sG~i~~lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 2 LKPIQHLLDNPD----DIPDIPRAAAEYLQ---VRFNAAYLMASGIISALRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred cchHHHHhcCCc----ccCCccHHHHHHHH---HHhcHHHHHHhhhHHHHHHccccHHHHHHHHHHHHH
Confidence 468889999997 45556666666655 368999999999999999877766788888776643
No 148
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=30.93 E-value=1.1e+03 Score=29.22 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHHhhC-----CC----chHHHHHHHH
Q psy8182 226 VFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHG-----CK----SLVREIVREI 287 (827)
Q Consensus 226 ~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~-----~~----~l~~~ilreI 287 (827)
.++-++|+.+- |+|..-+.-.+-++|++ -+-++.+|-++.++...+. .+ ..++..+++|
T Consensus 199 ~w~~rLL~lL~--~~~Psi~~~~~~~lL~~-A~~~~~l~lli~L~~~~~~~~~~~~~~l~~~vle~~l~~i 266 (696)
T PF14838_consen 199 QWAHRLLCLLS--SQHPSIAIEAISYLLTK-AQNPEHLALLIRLYAGLSVVNFPSLPGLFPAVLEQCLRQI 266 (696)
T ss_pred HHHHHHHHHHh--cCCCchHHHHHHHHHHh-cCCHHHHHHHHHHHhcccCCccccccchHHHHHHHHHHHH
Confidence 35667777666 88887777778888887 7778888888888888776 22 4445555555
No 149
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.68 E-value=3.2e+02 Score=33.06 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=59.2
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCC
Q psy8182 372 NVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTL-KLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAA 444 (827)
Q Consensus 372 ~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~-~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~ 444 (827)
-.+..|.+|+.+-.|+-+++.+..=|.. +|--++. ..++--+..|.|-++.||+-..+.|-.|..++|+.+
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~l--vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d 349 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGL--VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD 349 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhc--chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch
Confidence 3567899999999999988887766654 6755542 366778889999999999999999999999999977
No 150
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=30.31 E-value=3.2e+02 Score=25.75 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHhCCCC--ChHH---HHHHHHHHH-----hhcCCCChHHHHHHHHHH
Q psy8182 365 EQRDEYLNVLLDHMHDV-HTFVRTKVLQLFQRLVLDKAI--PVAF---TLKLLERAI-----GRLMDKSSNVVKYTVQLL 433 (827)
Q Consensus 365 ~~rd~ll~~L~er~~D~-n~~vRskvLq~~~~L~~~~~i--P~~~---~~~v~~~av-----~RL~DKSs~VRk~Ai~Ll 433 (827)
.....+...|..|+.|. |.-+=.|+|.++.+|+.+|.- .... ...+..+.- ..-.|.+..||+.|-.|.
T Consensus 35 ~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~ 114 (127)
T smart00273 35 SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEALRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLL 114 (127)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHH
Confidence 35567778888899888 777778999999999998842 1111 112222221 234677889999998888
Q ss_pred HHHH
Q psy8182 434 KTMI 437 (827)
Q Consensus 434 ~~ll 437 (827)
..+-
T Consensus 115 ~~l~ 118 (127)
T smart00273 115 ERLE 118 (127)
T ss_pred HHHc
Confidence 7654
No 151
>KOG1525|consensus
Probab=29.67 E-value=1.2e+03 Score=31.11 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=85.3
Q ss_pred cchHHHHHHHHhcccCCCc------------cCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhhhCCCChhHHhHHHH
Q psy8182 702 KSLVREIVREISAMEDGNE------------NAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLT 769 (827)
Q Consensus 702 ~~l~~eilreI~~~~~~d~------------~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~Ld~Esy~lR~aVle 769 (827)
..|++.++++.+.....+. ++=++-...|-.-+-+|-.-+|.+++.-+..|-.-|-+|.=-.|--+++
T Consensus 202 ~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~ 281 (1266)
T KOG1525|consen 202 DKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVK 281 (1266)
T ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3677777777766533221 2455666778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHH
Q psy8182 770 IVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVSTEKKL 820 (827)
Q Consensus 770 v~g~ii~~~l~~~~~~e~~k~~rd~~ld~L~er~~D~nayVRsKvlq~~~~ 820 (827)
..|.|+.+... .+++.+ +..+..-.-||.|.++=||-+.+|.-..
T Consensus 282 lvg~~~~~~~~--~l~~~~----~~~~~~fl~r~~D~~~~vR~~~v~~~~~ 326 (1266)
T KOG1525|consen 282 LVGRMFSDKDS--QLSETY----DDLWSAFLGRFNDISVEVRMECVESIKQ 326 (1266)
T ss_pred HHHHHHhcchh--hhcccc----hHHHHHHHHHhccCChhhhhhHHHHhHH
Confidence 99999975322 233333 4445555679999999999998886554
No 152
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.25 E-value=83 Score=23.36 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELL 350 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii 350 (827)
+..|+++|.+++..+|...+.+++||-
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 778999999999999999999999974
No 153
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=29.20 E-value=2.2e+02 Score=27.29 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcccchhHH--HHHHHHHHHHHhCCC--CChHHHHH--HHHHHH------hhcCCCChHHHHHHHHHH
Q psy8182 366 QRDEYLNVLLDHMHDVHTFVR--TKVLQLFQRLVLDKA--IPVAFTLK--LLERAI------GRLMDKSSNVVKYTVQLL 433 (827)
Q Consensus 366 ~rd~ll~~L~er~~D~n~~vR--skvLq~~~~L~~~~~--iP~~~~~~--v~~~av------~RL~DKSs~VRk~Ai~Ll 433 (827)
.-..+.+.|..|+.|..-.-| .|+|+++..|+.+|. +....+.. +++... .+=.|....||+.|-+++
T Consensus 34 ~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~ 113 (123)
T cd03571 34 EFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEIL 113 (123)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHHH
Confidence 346677888888888855554 589999999999883 11111111 111110 122478899999999987
Q ss_pred HH
Q psy8182 434 KT 435 (827)
Q Consensus 434 ~~ 435 (827)
.-
T Consensus 114 ~L 115 (123)
T cd03571 114 EL 115 (123)
T ss_pred HH
Confidence 64
No 154
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=28.87 E-value=6e+02 Score=25.38 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=59.8
Q ss_pred HHHHHhhcCCC-chHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCC
Q psy8182 325 EELLLNLEKES-YLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIP 403 (827)
Q Consensus 325 s~l~~~Ld~es-y~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP 403 (827)
..+....++++ |..|.|++..+. .+.. +...+.+|+.+....+|-..|||-.+=-++..+...
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~-~~~~-----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~---- 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLR-LIKK-----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK---- 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH-HHHh-----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----
Confidence 57777888877 555555544433 3332 124689999999999999999999998888777765
Q ss_pred hHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy8182 404 VAFTLKLLERAIGRLMDKSSNVVKYTVQ 431 (827)
Q Consensus 404 ~~~~~~v~~~av~RL~DKSs~VRk~Ai~ 431 (827)
....+.+.+-..-.+.+....|.|++
T Consensus 172 --~~~~v~~~l~~~~~~~~~~t~r~a~~ 197 (197)
T cd06561 172 --DPERVIAFLEKNGLSMPRLTLRYAIE 197 (197)
T ss_pred --CHHHHHHHHHHHHHhCChHHHHHHcC
Confidence 22444555544444556677777653
No 155
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.94 E-value=2.3e+02 Score=30.54 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHH
Q psy8182 342 TLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTL 408 (827)
Q Consensus 342 vle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~ 408 (827)
+-|.++.++..+..| ..+.+.+.+.++ +.+.|||+.|+.++..++..+.++-....
T Consensus 97 ~tE~l~~ilasv~~G---------~~~~L~~li~~~--~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 97 ITEDLPRILASVGDG---------DIEPLKELIEDP--DADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred hHhHHHHHHHHHhCC---------CHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 445555555544433 235666666654 67899999999999999999977755443
No 156
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.92 E-value=3e+02 Score=27.56 Aligned_cols=66 Identities=23% Similarity=0.177 Sum_probs=56.6
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 372 NVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 372 ~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
+.+.+=..|-|.|+|..++.++...... ......+++.+-.-+.|..-.|||+.--.|..+-.++|
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 7888888999999999999999998877 23456777778888889999999999999999888876
No 157
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=27.84 E-value=1.5e+03 Score=29.82 Aligned_cols=256 Identities=12% Similarity=0.101 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHhcchhhcccCCCcchhHHHH----HHHHHHHHHhcccccc-ccccHHHHHHHHHHHHHHHHHhccccc
Q psy8182 170 HLSNGLNSIHQILKSKINKLWDPPVVEEEFVN----MVANCCYKIIEDPCIA-SVKHKELRVFIFQIVGYLIKRYNHGIS 244 (827)
Q Consensus 170 ~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~----l~~~~~~~lLE~~~~~-~~K~~~~r~~if~il~~~vk~~~~~~~ 244 (827)
.++++-..+.+++++=.+.+|++...++..+. -|++=..+.|++++.. +-.-+.+|-+++.++...+......
T Consensus 258 Rrd~LR~ev~hVl~llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~-- 335 (1120)
T PF14228_consen 258 RRDRLRTEVTHVLRLLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKA-- 335 (1120)
T ss_pred hhhhHHHHHHHHHHHHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 34554466888888877788877777777655 3455555666655532 1123355555555443333322111
Q ss_pred hhhhHHHHhhhcc-cccHHHHHHHHHHHHhhCCC---chHHHHHHHHhcc----ccCCCcCCchhhhHHHHHHHHHHHHh
Q psy8182 245 CTVKIVQLLKNCE-HLVSPLAQAVVMFIRNHGCK---SLVREIVREISAM----EDGNENAGQDSSKMIAAFLNEVAAHG 316 (827)
Q Consensus 245 ~~~~IiqlL~~~e-hl~~~~Ae~v~~l~~~~~~~---~l~~~ilreI~~~----~~~d~~~D~~g~k~~s~FL~~Lae~~ 316 (827)
.. +.+. |+ .-+-| .++..|...++.. .-..+.-||+.+. ... .+|+...+++.+-+.+=.+..
T Consensus 336 -~s---e~fp-fe~RkslF--~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r--~kd~~~~~~~~~~Ie~~~~~L 406 (1120)
T PF14228_consen 336 -KS---EWFP-FEARKSLF--NLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQR--EKDSRERATAEMEIEEQKRNL 406 (1120)
T ss_pred -hh---hcCC-HHHHHHHH--HHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhh--hccchhhhHHHHHHHHHHHHH
Confidence 11 1111 11 00111 2233333322111 0112344444221 211 467777777777777655555
Q ss_pred HHHHHhhHHHHH--HhhcCCCchHHHHHHHHHHHHHHHHhh--------------------cCCC-----chH-------
Q psy8182 317 AEYVIPAMEELL--LNLEKESYLMRNCTLTIVTELLINVYK--------------------REDL-----SDE------- 362 (827)
Q Consensus 317 P~l~l~~is~l~--~~Ld~esy~lR~avle~~g~ii~~~~~--------------------~~~~-----~~~------- 362 (827)
-..-+.-|+.|. +.+|.....+---++..|.-|+..... |++. -|.
T Consensus 407 ~~aAl~AMAaLc~GPif~~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1120)
T PF14228_consen 407 RTAALSAMAALCGGPIFDDNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHAR 486 (1120)
T ss_pred HHHHHHHHHHHhcCCccccchhcccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHH
Confidence 555556666655 335544445544555555555543111 0000 000
Q ss_pred ---HH--------HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy8182 363 ---AK--------EQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQ 431 (827)
Q Consensus 363 ---~~--------~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~ 431 (827)
.+ .+ ..+++...+|.+-.++-|-.--..++.+++-..-.|.-...+++.++.=-+-|.+.-||..|++
T Consensus 487 ~~lgr~AL~nLL~~N-~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~q 565 (1120)
T PF14228_consen 487 HSLGRRALKNLLEHN-PDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQ 565 (1120)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHH
Confidence 00 11 2367777788887777776666677788876555553344689999999999999999999999
Q ss_pred HHHHHH
Q psy8182 432 LLKTMI 437 (827)
Q Consensus 432 Ll~~ll 437 (827)
||..+=
T Consensus 566 LL~~Le 571 (1120)
T PF14228_consen 566 LLRALE 571 (1120)
T ss_pred HHHHHH
Confidence 999853
No 158
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=27.24 E-value=9.3e+02 Score=27.09 Aligned_cols=188 Identities=18% Similarity=0.207 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHHhhCCCc---hHHHHHHHHhccccCCCcC
Q psy8182 221 HKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKS---LVREIVREISAMEDGNENA 297 (827)
Q Consensus 221 ~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~---l~~~ilreI~~~~~~d~~~ 297 (827)
.-+.|..+..|++.++++..-+-...+ ++- +....-+.+..+...|+.+. ..+.+|||-.+-+
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~--v~y------l~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e------ 154 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPT--VDY------LERHRPEILDILLRGYENPDIALNCGDMLRECIKHE------ 154 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HH--HHH------HHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH------
T ss_pred CCcccccHHHHHHHHHhhccCCCCCch--HHH------HHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH------
Confidence 346777888888888876422211011 222 22222357777888887764 4678999865433
Q ss_pred CchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHHHH
Q psy8182 298 GQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDE-AKEQRDEYLNVLLD 376 (827)
Q Consensus 298 D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~-~~~~rd~ll~~L~e 376 (827)
.+++++-. . +++..+..+.++.++.+=......+-+++... + ....+ -...=|.|++....
T Consensus 155 ------~l~~~iL~----~-----~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k--~~~a~fl~~n~d~ff~~~~~ 216 (335)
T PF08569_consen 155 ------SLAKIILY----S-----ECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-K--KLVAEFLSNNYDRFFQKYNK 216 (335)
T ss_dssp ------HHHHHHHT----S-----GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHTHHHHHHHHHH
T ss_pred ------HHHHHHhC----c-----HHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-H--HHHHHHHHHHHHHHHHHHHH
Confidence 23333332 1 14555778889999999888888888877641 1 11111 23345777775554
Q ss_pred hhcccchhHHHHHHHHHHHHHhCCCCCh--HHH---HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 377 HMHDVHTFVRTKVLQLFQRLVLDKAIPV--AFT---LKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 377 r~~D~n~~vRskvLq~~~~L~~~~~iP~--~~~---~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
=+.-.|-.+|-.+|+.+..|...++--. .++ ..-+.+...=|.|||-.+|=.|-..+.-++.+ |
T Consensus 217 Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p 285 (335)
T PF08569_consen 217 LLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-P 285 (335)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--S
T ss_pred HccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-C
Confidence 4555666779999999999998753221 112 35677778889999999999999999988775 6
No 159
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=27.13 E-value=1.9e+02 Score=33.94 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=88.7
Q ss_pred chHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHhhc
Q psy8182 278 SLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKES-YLMRNCTLTIVTELLINVYKR 356 (827)
Q Consensus 278 ~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~es-y~lR~avle~~g~ii~~~~~~ 356 (827)
+|+-.++..+....+.. .-...--|.++.++..+-++.|.++...-..|+..+.+-+ ..=|.-+-.-+.-+|-. |.+
T Consensus 262 ~L~pvlleRs~~Lfp~~-~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGE-y~s 339 (459)
T PF14764_consen 262 QLLPVLLERSDALFPIP-QYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGE-YLS 339 (459)
T ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhc-ccc
Confidence 55556666666555432 3345567899999999999999999998888888888532 33333333333333322 333
Q ss_pred CCCchH-HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy8182 357 EDLSDE-AKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIP--VAFTLKLLERAIGRLMDKSSNVVKYTVQLL 433 (827)
Q Consensus 357 ~~~~~~-~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP--~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll 433 (827)
...+.. -.++...||+.|+-=...++...| ......| -.+...++-.+.-.|.-++.-+.=.|.-.|
T Consensus 340 ~~~d~rct~~~i~~~fE~LE~llyE~~~~~~----------~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~pRv~l~L 409 (459)
T PF14764_consen 340 VSYDRRCTVEQINEFFEALEALLYEVTQSRR----------DPSASRPSSQPRLMTVLMTALAKLASRSQDLIPRVSLCL 409 (459)
T ss_pred cccCCccCHHHHHHHHHHHHHHHHHHhhccc----------cccccCCCCchhHHHHHHHHHHHHHHhCHhhhHHHHHHH
Confidence 322211 257889999999987777777665 1111111 112223333344455555555555667778
Q ss_pred HHHHh
Q psy8182 434 KTMIE 438 (827)
Q Consensus 434 ~~ll~ 438 (827)
+|+-.
T Consensus 410 sK~~~ 414 (459)
T PF14764_consen 410 SKMRT 414 (459)
T ss_pred HHHHH
Confidence 87655
No 160
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=26.81 E-value=6.2e+02 Score=24.93 Aligned_cols=98 Identities=12% Similarity=0.198 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhhhh
Q psy8182 386 RTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSS-NVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNER 464 (827)
Q Consensus 386 RskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs-~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~~~ 464 (827)
+.-.+..+..|+..+.++......++........+... .---..+..+..+|.+- ...
T Consensus 103 ~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~---------------------G~~ 161 (209)
T PF02854_consen 103 RRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTC---------------------GKK 161 (209)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHH---------------------HHH
T ss_pred HhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHH---------------------HHH
Confidence 34456677788888888987777777777777666432 11112333333333221 111
Q ss_pred HhhhhhhcCCCCchhhhhhhhhHHHhhhcc--ccccHHHHHHHHHHHH
Q psy8182 465 IKDCFEALDNDGPMFILENFDTLYSMLTHF--KSIEYKILHNVYTKLL 510 (827)
Q Consensus 465 L~e~~~Al~~e~~~~i~e~FD~lySll~~~--~~l~~~~~~~l~~~~l 510 (827)
++ -.++.+....+.|+.+..+...- ..+++..|..+- +++
T Consensus 162 l~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~-~l~ 203 (209)
T PF02854_consen 162 LE-----NSEESPKALDEIFERLQKYANSKKDPNLSSRIRFMLE-DLI 203 (209)
T ss_dssp HH-----HCHHHHHHHHHHHHHHHHHHHHCHSSSSSHHHHHHHH-HHH
T ss_pred Hh-----cCCCchhHHHHHHHHHHHHHHhhcccCCCHHHHHHHH-HHH
Confidence 11 12444555667888888888776 888999988887 665
No 161
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=26.54 E-value=3.1e+02 Score=24.78 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhC
Q psy8182 324 MEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD 399 (827)
Q Consensus 324 is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq~~~~L~~~ 399 (827)
....+..|.++--++|-.-+..+..+|.+-. ......+.+++++.+.+.|--+||==.|+|.+..|++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4456677888889999999999999997532 23456799999999999999999999999999999986
No 162
>KOG0946|consensus
Probab=26.42 E-value=1.2e+03 Score=29.36 Aligned_cols=189 Identities=17% Similarity=0.251 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCC----CcCC
Q psy8182 223 ELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGN----ENAG 298 (827)
Q Consensus 223 ~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d----~~~D 298 (827)
+-|....+-|....++|--..+++ -|-.++..+...|..+.++.-+|.-++.....| ...|
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~---------------Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQ---------------GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---------------ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 334444455555566665443333 233466666777777777777777666655443 1234
Q ss_pred chhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH------HH
Q psy8182 299 QDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEY------LN 372 (827)
Q Consensus 299 ~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~l------l~ 372 (827)
++-.-.++.-+.+.=-+.|. +|++|+++++.-.|.+|-.-++.+..++... +. +.++.+ +.
T Consensus 103 s~qsdd~g~~iae~fik~qd----~I~lll~~~e~~DF~VR~~aIqLlsalls~r--~~-------e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQD----NITLLLQSLEEFDFHVRLYAIQLLSALLSCR--PT-------ELQDALLVSPMGIS 169 (970)
T ss_pred chhhhHHHHHHHHHHHcCch----hHHHHHHHHHhhchhhhhHHHHHHHHHHhcC--CH-------HHHHHHHHCchhHH
Confidence 55556666666555444443 4789999999999999999999999988642 11 112222 23
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcC--------CCChHHHHHHHHHHHHHHhhCC
Q psy8182 373 VLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLM--------DKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 373 ~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~--------DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
.|.+=++|..--+|.-+|=++..|+..+ |--...-+.+-|-.||- =.+++|---++.||-.+|.+|-
T Consensus 170 ~lmdlL~DsrE~IRNe~iLlL~eL~k~n--~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 170 KLMDLLRDSREPIRNEAILLLSELVKDN--SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HHHHHHhhhhhhhchhHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 3445567888889999999998888854 11111223334445542 2356899999999999999876
No 163
>KOG1240|consensus
Probab=25.45 E-value=7.7e+02 Score=32.48 Aligned_cols=174 Identities=17% Similarity=0.240 Sum_probs=110.3
Q ss_pred hhcccCCC------cchhHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhccccchhhhHHHHhhhcccc
Q psy8182 186 INKLWDPP------VVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHL 259 (827)
Q Consensus 186 l~~lw~~~------~~ee~Fi~l~~~~~~~lLE~~~~~~~K~~~~r~~if~il~~~vk~~~~~~~~~~~IiqlL~~~ehl 259 (827)
...+|.+. .+++++.-+|.-.+...+ .++|..+.|.....+|..+.+. ....++|=..|.|+=|+
T Consensus 400 ~~q~~~~~~~~~~~~~~~~ga~l~vs~lts~I-----R~lk~~~tK~~ALeLl~~lS~~----i~de~~LDRVlPY~v~l 470 (1431)
T KOG1240|consen 400 EKQLWTARSSPNIKDPKEEGAVLFVSVLTSCI-----RALKTIQTKLAALELLQELSTY----IDDEVKLDRVLPYFVHL 470 (1431)
T ss_pred HHhcccccCCcccCCccccceeeeHHHHHHHH-----HhhhcchhHHHHHHHHHHHhhh----cchHHHHhhhHHHHHHH
Confidence 45567632 356666666666555555 2447888899999888776664 55667777788888888
Q ss_pred cH-----HHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCC
Q psy8182 260 VS-----PLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKE 334 (827)
Q Consensus 260 ~~-----~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~e 334 (827)
.. .=|.++..+. ++|--+-.+.+.| |...|..++|.++.|.. |+.
T Consensus 471 ~~Ds~a~Vra~Al~Tlt----------~~L~~Vr~~~~~d------------------aniF~eYlfP~L~~l~~--d~~ 520 (1431)
T KOG1240|consen 471 LMDSEADVRATALETLT----------ELLALVRDIPPSD------------------ANIFPEYLFPHLNHLLN--DSS 520 (1431)
T ss_pred hcCchHHHHHHHHHHHH----------HHHhhccCCCccc------------------chhhHhhhhhhhHhhhc--cCc
Confidence 72 1122222222 2232222222221 34568888888876643 546
Q ss_pred CchHHHHHHHHHHHHHHHHhh--------------cCCC-----chHHHHHHHHHHHHHHHhh----cccchhHHHHHHH
Q psy8182 335 SYLMRNCTLTIVTELLINVYK--------------REDL-----SDEAKEQRDEYLNVLLDHM----HDVHTFVRTKVLQ 391 (827)
Q Consensus 335 sy~lR~avle~~g~ii~~~~~--------------~~~~-----~~~~~~~rd~ll~~L~er~----~D~n~~vRskvLq 391 (827)
.-.+|-|.-++++.+-..++. ++.. +.++...+++|.+..++++ .|-.++||-.-||
T Consensus 521 ~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle 600 (1431)
T KOG1240|consen 521 AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLE 600 (1431)
T ss_pred cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 677899998888887766543 0000 1234456777777766664 7999999999999
Q ss_pred HHHHHHh
Q psy8182 392 LFQRLVL 398 (827)
Q Consensus 392 ~~~~L~~ 398 (827)
.+..||-
T Consensus 601 ~i~~LC~ 607 (1431)
T KOG1240|consen 601 SIIPLCV 607 (1431)
T ss_pred HHHHHHH
Confidence 9999985
No 164
>KOG1059|consensus
Probab=25.08 E-value=1.4e+03 Score=28.50 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=95.9
Q ss_pred hhHHHH-HHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHH-------------HhhcCCCchHHHHHH
Q psy8182 302 SKMIAA-FLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLIN-------------VYKREDLSDEAKEQR 367 (827)
Q Consensus 302 ~k~~s~-FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~-------------~~~~~~~~~~~~~~r 367 (827)
-|-++. -+.+++..-|+.|..|-..+++.||..--.+|---++.+-.||.+ +.+.+. ..-|
T Consensus 315 LKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~-----t~yr 389 (877)
T KOG1059|consen 315 LKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEG-----TNYR 389 (877)
T ss_pred HHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-----hhHH
Confidence 344433 357889999999999999999999987777887666665555532 111111 2344
Q ss_pred HHHHHHHHHhhcccchhH--HH--HHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q psy8182 368 DEYLNVLLDHMHDVHTFV--RT--KVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA 443 (827)
Q Consensus 368 d~ll~~L~er~~D~n~~v--Rs--kvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~ 443 (827)
|.++..+.+=. -.+.|- -- .=|.++..| -.+|-.+.....+.=+.-+.=|=..+|.-++.-++.+|.+--+.
T Consensus 390 dell~~II~iC-S~snY~~ItdFEWYlsVlveL---a~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~ 465 (877)
T KOG1059|consen 390 DELLTRIISIC-SQSNYQYITDFEWYLSVLVEL---ARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLA 465 (877)
T ss_pred HHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHH---HhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhc
Confidence 44444444322 122221 00 112222222 23333333222222222222234567888998888877732222
Q ss_pred ----------CCCChhHH--HHhhhhhhhhhhhHhhhhhh---cCCCCchh--hhhhhhhHHHhhhccccc
Q psy8182 444 ----------AKATTQYY--VQAELTLEEFNERIKDCFEA---LDNDGPMF--ILENFDTLYSMLTHFKSI 497 (827)
Q Consensus 444 ----------~~L~~~~~--v~ev~~l~ei~~~L~e~~~A---l~~e~~~~--i~e~FD~lySll~~~~~l 497 (827)
.-|...-| -+....+++-...|+..... +-|..+.. +..++-.|.+++-.+...
T Consensus 466 ~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~ 536 (877)
T KOG1059|consen 466 GSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEET 536 (877)
T ss_pred cchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 13555667 34444445554444444422 22444443 355666666666555444
No 165
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=24.79 E-value=5.5e+02 Score=27.68 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=71.6
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcc--cchhHHHHHHHHHHHHHhCC
Q psy8182 323 AMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHD--VHTFVRTKVLQLFQRLVLDK 400 (827)
Q Consensus 323 ~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D--~n~~vRskvLq~~~~L~~~~ 400 (827)
-++.+...|++++.++|.-.+.++.|+=. +.+...+...++..+.+.+.. .|+.+.-.+|++++.|.-.+
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~--------~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~ 126 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSV--------NDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN 126 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCC--------ChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc
Confidence 46788999999999999877787776532 122334556677777776643 58899999999999986432
Q ss_pred CCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 401 AIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 401 ~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
-.= ......+....+=|.--+..+|-+++++|.. |..||
T Consensus 127 ~~~-~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n-LS~np 165 (254)
T PF04826_consen 127 DYH-HMLANYIPDLLSLLSSGSEKTKVQVLKVLVN-LSENP 165 (254)
T ss_pred chh-hhHHhhHHHHHHHHHcCChHHHHHHHHHHHH-hccCH
Confidence 110 0011122222344666678888889988877 45555
No 166
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=24.66 E-value=1.7e+02 Score=29.78 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCC
Q psy8182 368 DEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNP 441 (827)
Q Consensus 368 d~ll~~L~er~~D~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nP 441 (827)
..+.+.+.+-+.|-|.|+|-.++.++...... .....++..+...+.|..-.|||+.=-.|..+-.+||
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 56788899999999999999999998777776 4557888888889999999999999999988777766
No 167
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.53 E-value=9.1e+02 Score=26.03 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=60.6
Q ss_pred HHHhhHHHHHHhhc--CCCc-h-HHHHHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q psy8182 319 YVIPAMEELLLNLE--KESY-L-MRNCTLTIVTELLINVYKRED---LSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQ 391 (827)
Q Consensus 319 l~l~~is~l~~~Ld--~esy-~-lR~avle~~g~ii~~~~~~~~---~~~~~~~~rd~ll~~L~er~~D~n~~vRskvLq 391 (827)
.++..++.+...+. .+.+ . +|.-+...++.++..+ .-+. .+......|..++..+. -++-|...+.+
T Consensus 78 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~~~~~~~~~~lr~~~~~~a~-----~~~~~~~~a~~ 151 (324)
T PF11838_consen 78 TALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERL-GWDPRPGEDHNDRLLRALLLSLAC-----GDPECVAEARE 151 (324)
T ss_dssp HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH---SSSS--SCHHHHHHHHHHHHHHH-----T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCCCcccccHHHHHHHHHHHHHhc-----cchhHHHHHHH
Confidence 34566666665554 3333 3 7777777777777765 3332 23334566777777777 78888999999
Q ss_pred HHHHHHhC--C---CCChHHHHHHHHHHHhh
Q psy8182 392 LFQRLVLD--K---AIPVAFTLKLLERAIGR 417 (827)
Q Consensus 392 ~~~~L~~~--~---~iP~~~~~~v~~~av~R 417 (827)
.+....+. + .+|...+..+...+++.
T Consensus 152 ~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~ 182 (324)
T PF11838_consen 152 LFKAWLDGNDSPESSIPPDLRWAVYCAGVRN 182 (324)
T ss_dssp HHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 99999984 4 78988888888777766
No 168
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=24.22 E-value=1.7e+02 Score=27.18 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHH--HHHHHHHHHHH--hhcccchhHHHHHHHHHHHHHhCC
Q psy8182 338 MRNCTLTIVTELLINVYKREDLSDEAKE--QRDEYLNVLLD--HMHDVHTFVRTKVLQLFQRLVLDK 400 (827)
Q Consensus 338 lR~avle~~g~ii~~~~~~~~~~~~~~~--~rd~ll~~L~e--r~~D~n~~vRskvLq~~~~L~~~~ 400 (827)
+|..+|.++|++.- +.. +.+.. ..++ +..++. ++-|-|||.|=.|+=++..||+.+
T Consensus 2 ~K~~lvrlianl~~---~~~---~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 2 FKRDLVRLIANLCY---KNK---EVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred cHHHHHHHHHHHHh---CCH---HHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 57889999999883 322 22222 2244 333333 557899999999999999999975
No 169
>KOG1293|consensus
Probab=24.12 E-value=3.9e+02 Score=32.61 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhcccc
Q psy8182 303 KMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVH 382 (827)
Q Consensus 303 k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd~ll~~L~er~~D~n 382 (827)
|++++-...|..- |+-. .-+..|+++|-.++-.+-.+++.++.|+|..... -..+=-+.+.+|.|++-+-|.-
T Consensus 402 ~s~srsV~aL~tg-~~~~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~-----~kskfl~~ngId~l~s~~~~~~ 474 (678)
T KOG1293|consen 402 KSFSRSVSALRTG-LKRN-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSN-----LKSKFLRNNGIDILESMLTDPD 474 (678)
T ss_pred HHHHHHHHHHHcC-Cccc-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhccc-----HHHHHHHcCcHHHHHHHhcCCC
Confidence 5666666666555 4433 3466778888888888999999999999986521 2234468999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCChHH--H-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhh
Q psy8182 383 TFVRTKVLQLFQRLVLDKAIPVAF--T-LKLLERAIGRLMDKSSNVVKYTVQLLKTMIES 439 (827)
Q Consensus 383 ~~vRskvLq~~~~L~~~~~iP~~~--~-~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~ 439 (827)
+.+|.+++-++.+++=+--.-..+ . .--+...+.=.+|+---|--.+.|||..|.-+
T Consensus 475 ~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 475 FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999987543211111 1 11233445557899999999999999886643
No 170
>PF05536 Neurochondrin: Neurochondrin
Probab=23.99 E-value=1.3e+03 Score=27.71 Aligned_cols=325 Identities=13% Similarity=0.195 Sum_probs=164.2
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHhCC---CCChH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCC--CC
Q psy8182 373 VLLDHMHDVHTFVRTKVLQLFQRLVLDK---AIPVA--FTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFA--AK 445 (827)
Q Consensus 373 ~L~er~~D~n~~vRskvLq~~~~L~~~~---~iP~~--~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~--~~ 445 (827)
.|.+-+.. +++..-.++++|..|+... .++.. ....+..........-...-+=.++.+|+.+|..-|.. ..
T Consensus 144 ~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~ 222 (543)
T PF05536_consen 144 ALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLES 222 (543)
T ss_pred HHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccccc
Confidence 44444443 9999999999999998842 23211 11233333333333333344556788999998887642 22
Q ss_pred CChhHHHHhhhhhhhhhhhHhhhh-hhcCCCCchhhhhhhhhHHHhhhcccc--c---cHHHHHHHHHHHHHHHHHHHHH
Q psy8182 446 ATTQYYVQAELTLEEFNERIKDCF-EALDNDGPMFILENFDTLYSMLTHFKS--I---EYKILHNVYTKLLLRSLKEFSS 519 (827)
Q Consensus 446 L~~~~~v~ev~~l~ei~~~L~e~~-~Al~~e~~~~i~e~FD~lySll~~~~~--l---~~~~~~~l~~~~l~~~~s~l~~ 519 (827)
..-..|... +...|..+. ....|+... ..+.-..++++.++. + +...-.+.+ .++ ++-...
T Consensus 223 ~~~~~W~~~------l~~gl~~iL~sr~~~~~R~---~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~-~Ll---v~l~~V 289 (543)
T PF05536_consen 223 PPSPKWLSD------LRKGLRDILQSRLTPSQRD---PALNLAASLLDLLGPEWLFADDKKSGKKFL-LLL---VNLACV 289 (543)
T ss_pred CChhhhHHH------HHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhChHhhcCCCCCCcccHH-HHH---HHHHHH
Confidence 333445222 222222222 111122221 223333334443331 1 111223444 344 355566
Q ss_pred hHhhhhcCC-C-CCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhcccccCcchhhH
Q psy8182 520 ILDNFLSGD-S-LDEELQEKYLNVVKMTLW-VFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHL 596 (827)
Q Consensus 520 ~l~~~~~~~-~-~~~~~~~~~~~~lkm~~f-Ll~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~~~~~W~~~r 596 (827)
++...+++. + .+.+....-.. .-.-+| ++..++...-.... +.+. ..+ .++.
T Consensus 290 Eir~~L~~L~~~~~~~~~~~~~~-~L~~cf~ilE~~I~~l~~~~~--~~~~---------------------~~~-~~~l 344 (543)
T PF05536_consen 290 EIRMSLEELLEQLNPEEYPEKQR-LLASCFSILEHFIGYLVRSLE--EESL---------------------DLD-PDTL 344 (543)
T ss_pred HHHHHhHHhhhcCCchhhHHHHH-HHHHHHHHHHHHHHHHHhccc--cccC---------------------CCC-HHHH
Confidence 666666551 1 11122111111 113344 34444443321110 0000 011 3445
Q ss_pred HHHHHHHHHHhccc---cccccCCChhhHHHHH-HHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhh--
Q psy8182 597 SNGLNSIHQILKSK---INKLWDPPVVEEEFVN-MVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISC-- 670 (827)
Q Consensus 597 ~~~L~~l~~~L~l~---l~~lw~~~~~ee~Fi~-l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~-- 670 (827)
.++.+.|...+..= |+..|....-+..|+= .+--.+.=|-|+|+ +.|..+.+++-..+.-|++...-
T Consensus 345 ~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~-------~lr~~v~~Ll~~ll~~~~~~~~~~~ 417 (543)
T PF05536_consen 345 LKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETS-------ALRKEVYGLLPFLLSLYRESFQEAE 417 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChH-------HHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 55555555555543 3445775544443554 44444556778884 38888899999999999888766
Q ss_pred -----HHHHH-HHHhhhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCc--chhHHHHHHHHHHHHhH
Q psy8182 671 -----TVKIV-QLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQD--SSKMIAAFLNEVAAHGA 742 (827)
Q Consensus 671 -----~~~Ii-qlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~--g~K~~s~FL~~Lae~~P 742 (827)
..-.+ =+|..++|++. -.++..++....+...+.+.+++-+.+....+-.+|.. +--..+.-|..++..-|
T Consensus 418 ~~~~~~~d~~r~lLPaL~~lt~-e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~e~ 496 (543)
T PF05536_consen 418 PAREGPLDFLRFLLPALCHLTA-EEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVTEP 496 (543)
T ss_pred cccccchhHHHHHHHHHhhhhc-cHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhccc
Confidence 33333 38888899884 45667778888888888888877666544332122222 22333444444555555
Q ss_pred HH
Q psy8182 743 EY 744 (827)
Q Consensus 743 ~l 744 (827)
+.
T Consensus 497 ~~ 498 (543)
T PF05536_consen 497 KM 498 (543)
T ss_pred cc
Confidence 44
No 171
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=23.23 E-value=1.1e+02 Score=29.34 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhC
Q psy8182 408 LKLLERAIGRLMDKSSNVVKYTVQLLKTMIESN 440 (827)
Q Consensus 408 ~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~n 440 (827)
...++....||..+++.|.-.|+.||-.++.|-
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNc 68 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNC 68 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 568888899999999999999999999999984
No 172
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=22.81 E-value=1e+03 Score=26.10 Aligned_cols=200 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhccccccccCCChhhHHHHHH-HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHh--hCcchhhH
Q psy8182 595 HLSNGLNSIHQILKSKINKLWDPPVVEEEFVNM-VANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKR--YNHGISCT 671 (827)
Q Consensus 595 ~r~~~L~~l~~~L~l~l~~lw~~~~~ee~Fi~l-~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~--y~h~~~~~ 671 (827)
+|+++.+.+.++.+ ..|..+....+.+-+. |.+..-..+++|. ..+.+.....+++.-.+.+ .......-
T Consensus 38 ~r~~~~~~~~~~v~---~~ll~~~~i~~~l~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~i~~~i 110 (367)
T PF04286_consen 38 NRERIAESIGEMVE---NELLTPETIRRKLESEDFSERLIEWLQDPE----NREKLRRILAELLEEILEKIDQEKIAEFI 110 (367)
T ss_pred cHHHHHHHHHHHHH---HHCCCHHHHHHHHhcccHHHHHHHHHhchh----hhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHH-----HHHhHHHHH
Q psy8182 672 VKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEV-----AAHGAEYVI 746 (827)
Q Consensus 672 ~~IiqlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~L-----ae~~P~lvl 746 (827)
.+.++---.-.-+++..+..+..+.++.....+.+.++..+...-.++ .....=-+.+..|+.+. .+..-..+.
T Consensus 111 ~~~~~~~l~~~~~~~~~~~~l~~ll~~~~~~~l~~~il~~i~~~l~~~-e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~ 189 (367)
T PF04286_consen 111 EKNLRKKLSEIILAPLLQKLLRSLLEEEQHQKLLDRILEKIKEYLKSE-ETRERIRDLIEEFLEEYLGKSFLDKLAEKIQ 189 (367)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHhccchHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q ss_pred hhHHHHHhhhC-CCChhHHhHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHh
Q psy8182 747 PAMEELLLNLE-KESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDH 802 (827)
Q Consensus 747 ~~~s~L~~~Ld-~Esy~lR~aVlev~g~ii~~~l~~~~~~e~~k~~rd~~ld~L~er 802 (827)
..+..++.-+. .....+|....+.+...+..+.+++...+...+-.+..++.+..+
T Consensus 190 ~~l~~~l~~l~~~~~~~lr~~~~~~l~~~i~~L~~d~~~~~~i~~~~~~~l~~~~~~ 246 (367)
T PF04286_consen 190 DELDSLLEKLQEDPDHPLRQEIDQKLRELIERLLTDPELREKIEELKDKLLSELILE 246 (367)
T ss_pred HHHHHHHHHHHhCcccHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhhhhHHH
No 173
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.78 E-value=1.4e+03 Score=27.63 Aligned_cols=322 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHHHhhcCCCchHHHHHH
Q psy8182 264 AQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTL 343 (827)
Q Consensus 264 Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~~~Ld~esy~lR~avl 343 (827)
|.++..+.+.| |.|.++-+.-+=...-.| |..--+.-=.=|..++.-.|..+-+....|.++|..|.-.=+.+|=
T Consensus 43 aq~I~kffk~F--P~l~~~Ai~a~~DLcEDe---d~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~ 117 (556)
T PF05918_consen 43 AQFIPKFFKHF--PDLQEEAINAQLDLCEDE---DVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVK 117 (556)
T ss_dssp HHHHHHHHCC---GGGHHHHHHHHHHHHT-S---SHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHH
T ss_pred HHHHHHHHhhC--hhhHHHHHHHHHHHHhcc---cHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHH
Q ss_pred HHH------------HHHHHHHh---hcCCCchHHHHHHHHHHHHHHHhhc-----------ccchhHHHHHHHHHHH--
Q psy8182 344 TIV------------TELLINVY---KREDLSDEAKEQRDEYLNVLLDHMH-----------DVHTFVRTKVLQLFQR-- 395 (827)
Q Consensus 344 e~~------------g~ii~~~~---~~~~~~~~~~~~rd~ll~~L~er~~-----------D~n~~vRskvLq~~~~-- 395 (827)
.++ +.++.++. .+++ ..|+..+.-|.+++. +.--|++.....++.+
T Consensus 118 ~sL~~ll~~d~k~tL~~lf~~i~~~~~~de------~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT 191 (556)
T PF05918_consen 118 NSLMSLLKQDPKGTLTGLFSQIESSKSGDE------QVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVT 191 (556)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH---HS-H------HHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccCch------HHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhcc
Q ss_pred ---------HHhCCCC-----ChHHHHHHHHHHHhhcCCCChHHH---HHHH-HHHHHHHhhCCC-CCCCChhHH-----
Q psy8182 396 ---------LVLDKAI-----PVAFTLKLLERAIGRLMDKSSNVV---KYTV-QLLKTMIESNPF-AAKATTQYY----- 451 (827)
Q Consensus 396 ---------L~~~~~i-----P~~~~~~v~~~av~RL~DKSs~VR---k~Ai-~Ll~~ll~~nPf-~~~L~~~~~----- 451 (827)
+...=.+ |...++.+++++.+ ..|=...+. ...| +++..+...=|| ...-+...+
T Consensus 192 aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~e-Qa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~ 270 (556)
T PF05918_consen 192 AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEE-QADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMC 270 (556)
T ss_dssp HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHH-HHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHH-HhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHH
Q ss_pred ---------HHhhhhhhhhhhhHhhhhhhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHhHh
Q psy8182 452 ---------VQAELTLEEFNERIKDCFEALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILD 522 (827)
Q Consensus 452 ---------v~ev~~l~ei~~~L~e~~~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l~~~~s~l~~~l~ 522 (827)
+.+..+++-+..--+-.--+-..+....++.+|+.|..++- -..-.++...-.+ +-|.-++..|+...+
T Consensus 271 ~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP-~~~~~~~l~fs~v-EcLL~afh~La~k~p 348 (556)
T PF05918_consen 271 EKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP-SKKTEPKLQFSYV-ECLLYAFHQLARKSP 348 (556)
T ss_dssp HHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-----------HHHH-HHHHHHHHHHHTT-T
T ss_pred HHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC-CCCCCCcccchHh-hHHHHHHHHHhhhCc
Q ss_pred hhhcCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhhhhhhhhhhhccc
Q psy8182 523 NFLSGD---------------SLDEELQEKYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEK 587 (827)
Q Consensus 523 ~~~~~~---------------~~~~~~~~~~~~~lkm~~fLl~~~~~~~e~~~~~~~~~~~~~~kg~k~~~~~~~~~~~~ 587 (827)
..+... +.+.+..+..+..|-++.=+++..+.......++-.+.-.....++.+..-.
T Consensus 349 ~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikkl~~~l~~~~k~~~~~k~~k~~~~lk------- 421 (556)
T PF05918_consen 349 NSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKKLKQALSEHNKAMSAAKTDKTKAELK------- 421 (556)
T ss_dssp HHHH---------------------TTTHHHHHHHHHHHHHHHHHHHHHHHHH-----------TT--CCHHC-------
T ss_pred chhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccCCccchHHHH-------
Q ss_pred ccCcchhhHHHHHHHHHHHhcc
Q psy8182 588 MQWDWDFHLSNGLNSIHQILKS 609 (827)
Q Consensus 588 ~~~~W~~~r~~~L~~l~~~L~l 609 (827)
.=+.....+|.+..+++.+
T Consensus 422 ---~~~q~~~~aLkt~~NI~~l 440 (556)
T PF05918_consen 422 ---TEEQIKVTALKTTNNILAL 440 (556)
T ss_dssp ---SHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhHHHH
No 174
>KOG2956|consensus
Probab=22.52 E-value=1.3e+03 Score=27.23 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc----CCCChH-HHHHHHHHHHHHH
Q psy8182 364 KEQRDEYLNVLLDHMHD-VHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRL----MDKSSN-VVKYTVQLLKTMI 437 (827)
Q Consensus 364 ~~~rd~ll~~L~er~~D-~n~~vRskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL----~DKSs~-VRk~Ai~Ll~~ll 437 (827)
.+--+.+|..+.|=+-| .+.--|.-||.++.++|.+. | .+...=+++|+..+ .|---- ||=++--.++.+=
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q--~-~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ--P-ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc--h-HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 45567888889999999 77788888999999999974 3 23233333333332 222223 4444444455555
Q ss_pred hhCCCCCCCChhHH------HHhhhhhhhhhhhHhhhh-hhcCCCCchhhhhhhhhHHHhhhccccccHHHHHHHHHHHH
Q psy8182 438 ESNPFAAKATTQYY------VQAELTLEEFNERIKDCF-EALDNDGPMFILENFDTLYSMLTHFKSIEYKILHNVYTKLL 510 (827)
Q Consensus 438 ~~nPf~~~L~~~~~------v~ev~~l~ei~~~L~e~~-~Al~~e~~~~i~e~FD~lySll~~~~~l~~~~~~~l~~~~l 510 (827)
...|+..--++... -..+.-++.+..-.+++. +.+.+--+ |..--+++.|++-+..+|+-.+ +-|
T Consensus 401 s~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-------diaP~~iqay~S~SS~VRKtaV-fCL 472 (516)
T KOG2956|consen 401 SHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP-------DIAPCVIQAYDSTSSTVRKTAV-FCL 472 (516)
T ss_pred hhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh-------hhhhHHHHHhcCchHHhhhhHH-HhH
Confidence 56788653333333 112222222222222221 11211111 2233456678888899999888 888
Q ss_pred HHHHHHHH-HhHhhhhcC
Q psy8182 511 LRSLKEFS-SILDNFLSG 527 (827)
Q Consensus 511 ~~~~s~l~-~~l~~~~~~ 527 (827)
+-.++.++ ..+...++.
T Consensus 473 Vamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 473 VAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred HHHHHHHhHHhhhhHhhh
Confidence 87778888 666666644
No 175
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=22.39 E-value=2.8e+02 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=22.1
Q ss_pred HhhcccchhHHHHHHHHHHHHHhCCCCC
Q psy8182 376 DHMHDVHTFVRTKVLQLFQRLVLDKAIP 403 (827)
Q Consensus 376 er~~D~n~~vRskvLq~~~~L~~~~~iP 403 (827)
+.-.|.+++||.++-++..+|.+...++
T Consensus 97 ~~~~d~g~~VR~ya~~L~~~l~~~~~l~ 124 (127)
T smart00273 97 SRGKDQGANIRTYAKYLLERLEDDRRLK 124 (127)
T ss_pred CCCeeCcHHHHHHHHHHHHHHcCHHHHh
Confidence 4556788999999999999888765544
No 176
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=22.38 E-value=9.9e+02 Score=25.69 Aligned_cols=166 Identities=17% Similarity=0.280 Sum_probs=96.6
Q ss_pred HHHHHHHHhcccc-c--cccchHHHHHHHHHHHHHHHHhhCcchhh--HHHHHHHH-hhhcccchHHHHHHHHHHHhcCC
Q psy8182 628 VANCCYKIIEDPC-I--ASVKHKELRVFIFQIVGYLIKRYNHGISC--TVKIVQLL-KNCEHLVSPLAQAVVMFIRNHGC 701 (827)
Q Consensus 628 ~~~~~y~lLE~~~-~--~~~K~~~ir~~if~il~~~vk~y~h~~~~--~~~IiqlL-~~~Ehl~~~~Ae~v~~l~~~~~~ 701 (827)
+.+-+|.++|.|. . .......+|..+.+.|+.+-...|...+. ..+++..+ ..|.|-+++..=-+.++...+|.
T Consensus 58 wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 58 WLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred HHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 3444555554421 1 12344567777777777777665554433 34444444 33444444444446666667777
Q ss_pred cchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHh-hhCCCCh-hHHhHHHHHHHHHHHHhh
Q psy8182 702 KSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLL-NLEKESY-LMRNCTLTIVTELLINVY 779 (827)
Q Consensus 702 ~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~-~Ld~Esy-~lR~aVlev~g~ii~~~l 779 (827)
...-+++.|=|.+....+ .+-+.+-..+-++++.+|......+..++. ++++..= -+..+|++. ++ ..
T Consensus 138 ~~~~~~L~~mi~~~~~~e-----~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~---~~--~~ 207 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSE-----SNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTR---VL--LT 207 (278)
T ss_pred hHHHHHHHHHHHhccccc-----chHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHH---HH--HH
Confidence 777766666667666443 567888889999999999999999865554 4665533 444444432 11 12
Q ss_pred ccC-CCChH-HHHHHHHHHHHHHHhc
Q psy8182 780 KRE-DLSDE-AKEQRDEYLNVLLDHM 803 (827)
Q Consensus 780 ~~~-~~~e~-~k~~rd~~ld~L~er~ 803 (827)
++. +..+. .-+....|++.+...+
T Consensus 208 ~~~~~~~~~~~i~~l~~~~~~v~~~~ 233 (278)
T PF08631_consen 208 TQSKDLSSSEKIESLEELLSIVEHSL 233 (278)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHh
Confidence 222 22222 2466788888665533
No 177
>KOG1104|consensus
Probab=22.23 E-value=1e+03 Score=29.53 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcccccccc--CCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhhHHH
Q psy8182 596 LSNGLNSIHQILKSKINKLW--DPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISCTVK 673 (827)
Q Consensus 596 r~~~L~~l~~~L~l~l~~lw--~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~~~~ 673 (827)
|-.-.+.+.+-++-++.++= +.++.|+...+|+. ++++.. ...+..|.++|+.|+-.+=|-.++=+.
T Consensus 20 r~~~~e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~-----~l~~~~------~~~~~~iL~~L~~ca~~lP~K~~~yaT 88 (759)
T KOG1104|consen 20 RISPAETLEKRLESLIREVGEPSGSSVEDNLENLVA-----VLEADL------ENFKSKILDILNTCAVYLPEKITAYAT 88 (759)
T ss_pred cCCcHHHHHHHHHHHHHhhcCCCCCcHHHhHHHHHH-----HHHhhH------HHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 33445666666777777776 55777777766543 555553 228899999999999888777776666
Q ss_pred HHHHH--hhhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHH---HHhHHHHHhh
Q psy8182 674 IVQLL--KNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVA---AHGAEYVIPA 748 (827)
Q Consensus 674 IiqlL--~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~La---e~~P~lvl~~ 748 (827)
+|-+| ..|+... ++|..+..++. +..+ +.+=...|..-+||+-|+ -+.|..+++-
T Consensus 89 LvgllN~kn~~fg~----~~v~~~~~~~q---------------~sl~-~~~~n~ar~llrfL~dL~~~~vl~~~sli~l 148 (759)
T KOG1104|consen 89 LVGLLNLKNFNFGG----EFVEYMIEELQ---------------ESLK-SGNWNEARYLLRFLSDLSNCHVLQADSLINL 148 (759)
T ss_pred HHHHHhccchhhHH----HHHHHHHHHHH---------------HHhh-cCChHHHHHHHHHHHHHhcCCccChHHHHHH
Confidence 66644 4444333 44555555543 1111 455567888888988888 5667777776
Q ss_pred HHHHHhhh
Q psy8182 749 MEELLLNL 756 (827)
Q Consensus 749 ~s~L~~~L 756 (827)
...++..-
T Consensus 149 ~esl~~~~ 156 (759)
T KOG1104|consen 149 FESLLDAA 156 (759)
T ss_pred HHHHHHHH
Confidence 66666653
No 178
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=21.21 E-value=5.6e+02 Score=25.79 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHHHhCCC-----CChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhh
Q psy8182 382 HTFVRTKVLQLFQRLVLDKA-----IPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAEL 456 (827)
Q Consensus 382 n~~vRskvLq~~~~L~~~~~-----iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~ 456 (827)
.+-.=+.+|+++..|+|.|- +...+..+++..+-.+-.|. .|-+.|+..|-.++.+.|.. -.+|++..
T Consensus 30 ~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~--~i~q~sLaILEs~Vl~S~~l-----y~~V~~ev 102 (160)
T PF11841_consen 30 KGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA--SILQRSLAILESIVLNSPKL-----YQLVEQEV 102 (160)
T ss_pred hHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc--hHHHHHHHHHHHHHhCCHHH-----HHHHhccC
Confidence 34555789999999999874 45667788888888777765 46668999999999987753 23455555
Q ss_pred hhhhhhhhH
Q psy8182 457 TLEEFNERI 465 (827)
Q Consensus 457 ~l~ei~~~L 465 (827)
+.+.+-.-|
T Consensus 103 t~~~Li~hL 111 (160)
T PF11841_consen 103 TLESLIRHL 111 (160)
T ss_pred CHHHHHHHH
Confidence 555554333
No 179
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=21.08 E-value=3.8e+02 Score=28.91 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=77.6
Q ss_pred hhHHHHHHhhcC-CCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHH-HHHHHHHHhhcccchhHHHHHHHHHHHHHhC
Q psy8182 322 PAMEELLLNLEK-ESYLMRNCTLTIVTELLINVYKREDLSDEAKEQRD-EYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD 399 (827)
Q Consensus 322 ~~is~l~~~Ld~-esy~lR~avle~~g~ii~~~~~~~~~~~~~~~~rd-~ll~~L~er~~D~n~~vRskvLq~~~~L~~~ 399 (827)
.++..|+.+|++ +...++..++-++|+.-.. +.++.--|+ +-+.++..-+.|-++-||.+|++++..|...
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-------~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAF-------PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 456778888885 5688888888899986432 223344555 7788999999999999999999999988764
Q ss_pred C--CCC-hHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy8182 400 K--AIP-VAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPF 442 (827)
Q Consensus 400 ~--~iP-~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf 442 (827)
. ..- ..+..++.+.++.+ .-.+.|.-+++++|+.|=.++-|
T Consensus 85 ~en~~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~ 128 (254)
T PF04826_consen 85 DENQEQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDY 128 (254)
T ss_pred hhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcch
Confidence 2 111 12234566655553 23467778899999887544443
No 180
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=20.73 E-value=8.2e+02 Score=24.11 Aligned_cols=96 Identities=16% Similarity=0.289 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhhCCCCCCCChhHHHHhhhhhhhhhhhH
Q psy8182 386 RTKVLQLFQRLVLDKAIPVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAAKATTQYYVQAELTLEEFNERI 465 (827)
Q Consensus 386 RskvLq~~~~L~~~~~iP~~~~~~v~~~av~RL~DKSs~VRk~Ai~Ll~~ll~~nPf~~~L~~~~~v~ev~~l~ei~~~L 465 (827)
+...++.+..|...+.+|......++......+.+..+.-.-..+.++..+|.+
T Consensus 96 ~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~-------------------------- 149 (200)
T smart00543 96 RLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPT-------------------------- 149 (200)
T ss_pred HHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHH--------------------------
Confidence 345667777888888888776666666666555444322111233333333332
Q ss_pred hhhhhhcC-CCCchhhhhhhhhHHHhhhccc--cccHHHHHHHHHHHH
Q psy8182 466 KDCFEALD-NDGPMFILENFDTLYSMLTHFK--SIEYKILHNVYTKLL 510 (827)
Q Consensus 466 ~e~~~Al~-~e~~~~i~e~FD~lySll~~~~--~l~~~~~~~l~~~~l 510 (827)
+=..+. ++.+....+.|+.+.++.+.-. .+++..+..+- +++
T Consensus 150 --~G~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~-~l~ 194 (200)
T smart00543 150 --CGKDLEREKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLE-LLI 194 (200)
T ss_pred --hhHHHcCcccHHHHHHHHHHHHHHHhcccccCCChHHHHHHH-HHH
Confidence 222333 5666666777777777776654 56777777666 544
No 181
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=20.59 E-value=9.4e+02 Score=30.47 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=47.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhCcchhh--------HHHHHHHHhhhc
Q psy8182 611 INKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHGISC--------TVKIVQLLKNCE 682 (827)
Q Consensus 611 l~~lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~~~K~~~ir~~if~il~~~vk~y~h~~~~--------~~~IiqlL~~~E 682 (827)
|--||+|.+.+..|.+++-|.--.+-+-- .......+..+ .=++.++.|+-|..++ .-+=+|+|.|.=
T Consensus 555 i~Pl~gp~v~~s~~~~~l~r~~~~~~~~~---~~~~~~~~~~~-~Di~~Ll~Rfa~~~Sfs~d~gGGg~eSN~~llp~li 630 (802)
T PF13764_consen 555 ILPLWGPEVPESAYASALARHWTDLQEVG---GADGPRFRLLI-HDIKLLLLRFATGRSFSADSGGGGRESNMQLLPYLI 630 (802)
T ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHHhh---CCCCCchhhhH-HHHHHHHHHHHcCCCccccCCCCChhhhHHHHHHHH
Confidence 55689999999999998877765555433 22333444444 6667777776555432 456677777766
Q ss_pred ccch
Q psy8182 683 HLVS 686 (827)
Q Consensus 683 hl~~ 686 (827)
|++-
T Consensus 631 ~~~~ 634 (802)
T PF13764_consen 631 QLAL 634 (802)
T ss_pred HHHH
Confidence 6654
No 182
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=20.54 E-value=4.5e+02 Score=24.16 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHhhhcccchHHHHHHHHHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHH
Q psy8182 674 IVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELL 753 (827)
Q Consensus 674 IiqlL~~~Ehl~~~~Ae~v~~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~ 753 (827)
+.++|.-|.|-+.|+.+-|..+-..---..-+..++++|+. ..||.++-...+....+.+.-++
T Consensus 32 l~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~----------------~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 32 LKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGA----------------VRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccH----------------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 34788888888888888766555544333445566666653 34688888777777777776655
Q ss_pred h
Q psy8182 754 L 754 (827)
Q Consensus 754 ~ 754 (827)
+
T Consensus 96 ~ 96 (98)
T PF14726_consen 96 D 96 (98)
T ss_pred h
Confidence 4
No 183
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=20.38 E-value=3.5e+02 Score=24.88 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=41.6
Q ss_pred HHHHhhhcccccHHHHHHHHHHHHhhCCCchHHHHHHHHhccccCCCcCCchhhhHHHHHHHHHHHHhHHHHHhhHHHHH
Q psy8182 249 IVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELL 328 (827)
Q Consensus 249 IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilreI~~~~~~d~~~D~~g~k~~s~FL~~Lae~~P~l~l~~is~l~ 328 (827)
+.++|.-|.|-+.++.+-|..+-..---..-+..++++||. ..||.++-...+....+.+..++
T Consensus 32 l~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~----------------~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 32 LKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGA----------------VRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccH----------------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 55688888888888877776665543333344455555543 34677777777776666666554
Q ss_pred H
Q psy8182 329 L 329 (827)
Q Consensus 329 ~ 329 (827)
.
T Consensus 96 ~ 96 (98)
T PF14726_consen 96 D 96 (98)
T ss_pred h
Confidence 3
No 184
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=20.37 E-value=1.5e+02 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=23.5
Q ss_pred HHHHHhhhCCCChhHHhHHHHHHHHHH
Q psy8182 749 MEELLLNLEKESYLMRNCTLTIVTELL 775 (827)
Q Consensus 749 ~s~L~~~Ld~Esy~lR~aVlev~g~ii 775 (827)
+..|+++|.+++-.++...+.+++||.
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 677888888889999999999999874
No 185
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=20.05 E-value=5.2e+02 Score=29.06 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=59.7
Q ss_pred HHHHhcCCcchHHHHHHHHhcccCCCccCCCcchhHHHHHHHHHHHHhHHHHHhhHHHHHhh-hCCCC-----------h
Q psy8182 694 MFIRNHGCKSLVREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLN-LEKES-----------Y 761 (827)
Q Consensus 694 ~l~~~~~~~~l~~eilreI~~~~~~d~~~Ds~g~K~~s~FL~~Lae~~P~lvl~~~s~L~~~-Ld~Es-----------y 761 (827)
-++.+++.+.| ..|+..|+ +-|..=-+-|+.|+.++=+.-|.-++..+..++.. +.=.. |
T Consensus 176 ~~a~~~~DpvL-~~il~~IA-------~DE~rH~~fy~~iv~~~l~~dPd~t~~Ai~~vm~~~f~MPg~~m~dg~d~~lF 247 (330)
T PF03405_consen 176 RLAKQAGDPVL-AQILGRIA-------ADEARHEAFYRNIVEAYLELDPDGTMLAIADVMRNKFRMPGHLMPDGRDPDLF 247 (330)
T ss_dssp HHHHHTTSHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH----TTTT---SS-TTHH
T ss_pred HHHhhcCChHH-HHHHHHHH-------hhHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhccCcchhcccCcchHHH
Confidence 34445555554 46666666 34566677888899999999999888887777655 33222 3
Q ss_pred hHHhHHHHHHH--------HHHHHhh------ccCCCChHHHHHHHHHHHHHHHhc
Q psy8182 762 LMRNCTLTIVT--------ELLINVY------KREDLSDEAKEQRDEYLNVLLDHM 803 (827)
Q Consensus 762 ~lR~aVlev~g--------~ii~~~l------~~~~~~e~~k~~rd~~ld~L~er~ 803 (827)
.-+.+|++-.| +|+..++ +-++++++.++.|+ |+-.|-.|+
T Consensus 248 ~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard-~l~~l~~r~ 302 (330)
T PF03405_consen 248 ERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARD-YLCALPARL 302 (330)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHH-HHHhhHHHH
Confidence 43445554433 4444433 23577888888887 666666665
Done!