RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8182
(827 letters)
>gnl|CDD|221856 pfam12922, Cnd1_N, non-SMC mitotic condensation complex subunit 1,
N-term. The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
This is the conserved N-terminus of the subunit 1.
Length = 169
Score = 93.1 bits (232), Expect = 7e-22
Identities = 30/170 (17%), Positives = 70/170 (41%), Gaps = 6/170 (3%)
Query: 73 EYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFE 132
+ + LL SL ++ + L + + + N ++M ++ + E
Sbjct: 2 SSSVKSKL-LDLLSSSLSVLAASITALLEAGDDQDSIS-SHKNALEMYGYLLQWLLEALE 59
Query: 133 TRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDP 192
+K A K K + A K W W+ L I ++L+ +++L+
Sbjct: 60 KA-EKSAAAAPARAGKGKKKRKKAKKAVVA-SWKWEAQRERALELIAKVLQLDLSRLFGT 117
Query: 193 PVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHG 242
+ F+++ Y ++E+ A +K+K ++ IF+++G +K++
Sbjct: 118 TPERDTFISLFTRPIYLLLENE--ARLKNKSIKDAIFKVLGIAVKKHGQA 165
Score = 93.1 bits (232), Expect = 7e-22
Identities = 30/170 (17%), Positives = 70/170 (41%), Gaps = 6/170 (3%)
Query: 498 EYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQEKYLNVVKMTLWVFTEFIINFE 557
+ + LL SL ++ + L + + + N ++M ++ + E
Sbjct: 2 SSSVKSKL-LDLLSSSLSVLAASITALLEAGDDQDSIS-SHKNALEMYGYLLQWLLEALE 59
Query: 558 TRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHLSNGLNSIHQILKSKINKLWDP 617
+K A K K + A K W W+ L I ++L+ +++L+
Sbjct: 60 KA-EKSAAAAPARAGKGKKKRKKAKKAVVA-SWKWEAQRERALELIAKVLQLDLSRLFGT 117
Query: 618 PVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQIVGYLIKRYNHG 667
+ F+++ Y ++E+ A +K+K ++ IF+++G +K++
Sbjct: 118 TPERDTFISLFTRPIYLLLENE--ARLKNKSIKDAIFKVLGIAVKKHGQA 165
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 90.0 bits (223), Expect = 2e-18
Identities = 51/282 (18%), Positives = 122/282 (43%), Gaps = 6/282 (2%)
Query: 164 QWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKE 223
+ + + L I +++ ++ + ++F+ + ++E K +
Sbjct: 145 EKRDCNQMEDLLPKIVDLIRGCLSNSRETSEEMDKFLFLFLEPTKVLLERE--RDSKVRS 202
Query: 224 LRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREI 283
+ +I G ++ +NH I L HL +A+ + +L +I
Sbjct: 203 RLLECIRIYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISDELNRCALKEDI 262
Query: 284 VREISAME-DGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCT 342
+ + + + +G K I+ FLN+++ ++ E L+ ES+ +R C
Sbjct: 263 PVLLKNLSFNLPDLSG---PKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF 319
Query: 343 LTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLDKAI 402
L I L+ + K + + K++ ++ + +L++ + D + + RTK LQ+ +++ +
Sbjct: 320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379
Query: 403 PVAFTLKLLERAIGRLMDKSSNVVKYTVQLLKTMIESNPFAA 444
V +++ RL D+SS V + ++L ++ +PFA+
Sbjct: 380 TVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFAS 421
Score = 64.2 bits (156), Expect = 2e-10
Identities = 38/227 (16%), Positives = 93/227 (40%), Gaps = 6/227 (2%)
Query: 589 QWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKE 648
+ + + L I +++ ++ + ++F+ + ++E K +
Sbjct: 145 EKRDCNQMEDLLPKIVDLIRGCLSNSRETSEEMDKFLFLFLEPTKVLLERE--RDSKVRS 202
Query: 649 LRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREI 708
+ +I G ++ +NH I L HL +A+ + +L +I
Sbjct: 203 RLLECIRIYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISDELNRCALKEDI 262
Query: 709 VREISAME-DGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCT 767
+ + + + +G K I+ FLN+++ ++ E L+ ES+ +R C
Sbjct: 263 PVLLKNLSFNLPDLSG---PKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF 319
Query: 768 LTIVTELLINVYKREDLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKV 814
L I L+ + K + + K++ ++ + +L++ + D + + RTK
Sbjct: 320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKA 366
>gnl|CDD|152123 pfam11687, DUF3284, Domain of unknown function (DUF3284). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 120
Score = 30.0 bits (68), Expect = 2.1
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 200 VNMVANCCYKIIEDPCIASVK-HKELRVFIFQIVGY-LIKRYNHGISCTVKIVQLLKN 255
+N+ A + + +A +K + + GY K++ +G TVKI + N
Sbjct: 7 LNVPAKDFFDKLIKSALADIKQATGKELTRASLQGYEYQKQFGNGRRATVKITEYEPN 64
Score = 30.0 bits (68), Expect = 2.1
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 625 VNMVANCCYKIIEDPCIASVK-HKELRVFIFQIVGY-LIKRYNHGISCTVKIVQLLKN 680
+N+ A + + +A +K + + GY K++ +G TVKI + N
Sbjct: 7 LNVPAKDFFDKLIKSALADIKQATGKELTRASLQGYEYQKQFGNGRRATVKITEYEPN 64
>gnl|CDD|152490 pfam12055, DUF3536, Domain of unknown function (DUF3536). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and archaea. This domain is
typically between 274 to 285 amino acids in length. This
domain is found associated with pfam03065.
Length = 285
Score = 30.5 bits (69), Expect = 3.4
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 367 RDEYLNVLLD-HMHDVHTFVRTKVLQLFQRLVLDKAIPVAFTLKLLE 412
RDEY+ V+LD ++ F+ R LD V LKLLE
Sbjct: 39 RDEYIEVILDRSPENLEAFLARH-----ARRPLDAEEKVRA-LKLLE 79
>gnl|CDD|193547 cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacylase 1-like protein
2-like, amidohydrolase subfamily. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2;
amidohydrolase)-like subfamily. This group contains many
uncharacterized proteins predicted as amidohydrolases,
including gene products of abgA and abgB that catalyze
the cleavage of p-aminobenzoyl-glutamate, a folate
catabolite in Escherichia coli , to p-aminobenzoate and
glutamate. p-Aminobenzoyl-glutamate utilization is
catalyzed by the abg region gene product, AbgT.
Aminoacylase 1 (ACY1) proteins are a class of zinc
binding homodimeric enzymes involved in hydrolysis of
N-acetylated proteins. N-terminal acetylation of
proteins is a widespread and highly conserved process
that is involved in the protection and stability of
proteins. Several types of aminoacylases can be
distinguished on the basis of substrate specificity.
ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino
acids (except L-aspartate), especially
N-acetyl-methionine and acetyl-glutamate into L-amino
acids and an acyl group. However, ACY1 can also catalyze
the reverse reaction, the synthesis of acetylated amino
acids. ACY1 may also play a role in xenobiotic
bioactivation as well as the inter-organ processing of
amino acid-conjugated xenobiotic derivatives
(S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 29.4 bits (67), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 444 AKATTQYYVQAEL--TLEEFNERIKDCFEA 471
A ++YV+A LEE E++K+C E
Sbjct: 220 DYAEAEFYVRAATRKYLEELVEKVKNCAEG 249
>gnl|CDD|193508 cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2,
amidohydrolase family. Peptidase M20 family,
Aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)
subfamily. This group contains many uncharacterized
proteins predicted as amidohydrolases, including gene
products of abgA and abgB that catalyze the cleavage of
p-aminobenzoyl-glutamate, a folate catabolite in
Escherichia coli, to p-aminobenzoate and glutamate.
p-Aminobenzoyl-glutamate utilization is catalyzed by the
abg region gene product, AbgT. Aminoacylase 1 (ACY1)
proteins are a class of zinc binding homodimeric enzymes
involved in hydrolysis of N-acetylated proteins.
N-terminal acetylation of proteins is a widespread and
highly conserved process that is involved in the
protection and stability of proteins. Several types of
aminoacylases can be distinguished on the basis of
substrate specificity. ACY1 breaks down cytosolic
aliphatic N-acyl-alpha-amino acids (except L-aspartate),
especially N-acetyl-methionine and acetyl-glutamate into
L-amino acids and an acyl group. However, ACY1 can also
catalyze the reverse reaction, the synthesis of
acetylated amino acids. ACY1 may also play a role in
xenobiotic bioactivation as well as the inter-organ
processing of amino acid-conjugated xenobiotic
derivatives (S-substituted-N-acetyl-L-cysteine).
Length = 358
Score = 29.0 bits (66), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 444 AKATTQYYVQAE--LTLEEFNERIKDCFEA 471
A +YYV+A LEE ER+K C E
Sbjct: 222 DYAEVEYYVRAPTREYLEELVERVKKCAEG 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,352,848
Number of extensions: 4321798
Number of successful extensions: 4256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4250
Number of HSP's successfully gapped: 59
Length of query: 827
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 722
Effective length of database: 6,280,432
Effective search space: 4534471904
Effective search space used: 4534471904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.0 bits)