RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8182
         (827 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 31.7 bits (71), Expect = 0.37
 Identities = 42/376 (11%), Positives = 111/376 (29%), Gaps = 41/376 (10%)

Query: 52  PMFILENFDTLYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILDNFLSGDSLDEELQE 111
                     +  +L    +++           LLR  +    ++        +   L +
Sbjct: 133 REMAEAFAGEIPKILVAGDTMDSVKQSAALC--LLRLYRTSPDLVPMGDWTSRVVHLLND 190

Query: 112 KYLNVVKMTLWVFTEFIINFETRLQKDYHKIVIDAKARKVKVRAAIKHNEKMQWDWDFHL 171
           ++L VV     + T          +      V        ++   +        D+ ++ 
Sbjct: 191 QHLGVVTAATSLITTLAQKNPEEFKTSVSLAV-------SRLSRIVTSASTDLQDYTYYF 243

Query: 172 SNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASVKHKELRVFIFQI 231
                   ++L+        PP  +      +  C   I+          K         
Sbjct: 244 VPAPWLSVKLLRLLQC---YPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNA 300

Query: 232 VGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSLVREIVREISAME 291
           V +            + ++    +  +L+      +  F+++   ++ +R +  E     
Sbjct: 301 VLF----------EAISLIIHHDSEPNLLVRACNQLGQFLQHR--ETNLRYLALESMCTL 348

Query: 292 DGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMRNCTLTIVTELLI 351
             +E + +     I   +N +       V     +LL  +   S         IV E+L 
Sbjct: 349 ASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ-----QIVAEMLS 403

Query: 352 NV------YKRE------DLSDEAKEQRDEYLNVLLDHMHDVHTFVRTKVLQLFQRLVLD 399
            +       + E       L+++       Y++ +L+ +     +V  +V     ++V++
Sbjct: 404 YLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 463

Query: 400 KAIPVAFTLKLLERAI 415
           +     +  K +  A+
Sbjct: 464 RDDVQGYAAKTVFEAL 479



 Score = 31.7 bits (71), Expect = 0.41
 Identities = 27/324 (8%), Positives = 94/324 (29%), Gaps = 34/324 (10%)

Query: 160 NEKMQWDWDFHLSNGLNSIHQILKSKINKLWDPPVVEEEFVNMVANCCYKIIEDPCIASV 219
              +       ++   + I  + +    +      +    ++ +       ++D     V
Sbjct: 185 VHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFV 244

Query: 220 KHKELRVFIFQIVGYLIKRYNHGISCTVKIVQLLKNCEHLVSPLAQAVVMFIRNHGCKSL 279
               L V + +++       +  +    ++ + L+   +      ++  +   N    ++
Sbjct: 245 PAPWLSVKLLRLLQCYPPPEDPAVR--GRLTECLETILNKAQEPPKSKKVQHSNAKN-AV 301

Query: 280 VREIVREISAMEDGNENAGQDSSKMIAAFLNEVAAHGAEYVIPAMEELLLNLEKESYLMR 339
           + E +  I   +       +  +++   FL     +     + +M  L  +      +  
Sbjct: 302 LFEAISLIIHHDSEPNLLVRACNQLGQ-FLQHRETNLRYLALESMCTLASSEFSHEAVKT 360

Query: 340 NCTLTIVTEL-----LINVYKREDLSDEAKEQ-RDEYLNVLLDHMHDVHTFVRTKVLQLF 393
           +    I          +     + L          + +  +L ++      +R +++   
Sbjct: 361 HIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIV--- 417

Query: 394 QRLVLDKAIPVAFTLKLLERAIGRLMDK-SSNVVKYTVQLLKTMIESNPFAAKATTQYYV 452
                                +  L +K + +   Y   +L  +  +  + ++      +
Sbjct: 418 -------------------LKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVI 458

Query: 453 QAELTLEEFNER-IKDCFEALDND 475
           Q  +  ++      K  FEAL   
Sbjct: 459 QIVINRDDVQGYAAKTVFEALQAP 482


>d1kxpd2 a.126.1.1 (D:215-404) Vitamin D binding protein {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 190

 Score = 27.6 bits (61), Expect = 5.6
 Identities = 8/96 (8%), Positives = 21/96 (21%), Gaps = 17/96 (17%)

Query: 14  DELLEKQATTQYYVQAELTLEEFNERIKDCFEALDNDGPMFIL------------ENFDT 61
            +L +  +T     +     +   +    C   +       +                  
Sbjct: 69  VKLCDNLSTKNSKFEDCCQEKTAMDVFV-CTYFMPAAQLPELPDVELPTNKDVCDPGNTK 127

Query: 62  LYSMLTHFKSIEYKILHNVYTKLLLRSLKEFSSILD 97
           +    T     E     ++    L + L+     L 
Sbjct: 128 VMDKYTF----ELSRRTHLPEVFLSKVLEPTLKSLG 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,146,246
Number of extensions: 155005
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 33
Length of query: 827
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 734
Effective length of database: 1,130,706
Effective search space: 829938204
Effective search space used: 829938204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)