BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8183
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 13  RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
           +RTHTG+KPY C  P C K+FSQL++L++H R H  +KPYKC  C K F  E  L  H  
Sbjct: 97  QRTHTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR 154

Query: 73  KHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
            H   K  K   C  CGKS+++   L+ H + H
Sbjct: 155 THTGEKPYK---CPECGKSFSRRDALNVHQRTH 184



 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 13  RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
           +RTHTG+KPYKC  P C K+FSQ +NL++H R H  +KPY C  C K F     L  H  
Sbjct: 69  QRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126

Query: 73  KHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHAERSDKRPPIIG 117
            H   K  K   C  CGKS+++E  L  H + H      + P  G
Sbjct: 127 THTGEKPYK---CPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168



 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 10  MEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLE 69
            E +RTHTG+KPYKC  P C K+FS   +L  H R H  +KPYKC  C K F     L  
Sbjct: 38  AEHQRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRA 95

Query: 70  HIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHAERSDKRPPIIGIPRAALENPH 127
           H   H      K + C  CGKS++Q  +L  H + H      + P  G   +  +N H
Sbjct: 96  HQRTHTGE---KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150



 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 18  GDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDS 77
           G+KPY C  P C K+FS+  +L  H R H  +KPYKC  C K F D+  L  H   H   
Sbjct: 18  GEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75

Query: 78  KHLKTHICQYCGKSYTQETYLSKHMQKH 105
           K  K   C  CGKS++Q   L  H + H
Sbjct: 76  KPYK---CPECGKSFSQRANLRAHQRTH 100



 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 13  RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
           +RTHTG+KPYKC  P C K+FS+  NL +H R H  +KPYKC  C K F    AL  H  
Sbjct: 125 QRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182

Query: 73  KHKDSK 78
            H   K
Sbjct: 183 THTGKK 188


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           +KPYKC  P C K+FSQ SNLQ H R H  +KPYKC  C K F   + L +H   H   K
Sbjct: 2   EKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAER 108
             K   C  CGKS+++  +LS+H + H  +
Sbjct: 60  PYK---CPECGKSFSRSDHLSRHQRTHQNK 86



 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
          +RTHTG+KPYKC  P C K+FSQ S+LQ H R H  +KPYKC  C K F     L  H  
Sbjct: 24 QRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQR 81

Query: 73 KHKDSK 78
           H++ K
Sbjct: 82 THQNKK 87


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 7/100 (7%)

Query: 8   LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDET 65
           L + +RR HTG+KP+KC   GC K++S+L NL++H R H  +KPY C    C K F + +
Sbjct: 55  LVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113

Query: 66  ALLEHIPKHKDSKHLKTHICQY--CGKSYTQETYLSKHMQ 103
              +H  +++   + K ++C+   C K YT  + L KH++
Sbjct: 114 DRAKH--QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151



 Score = 30.4 bits (67), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)

Query: 16  HTGDKPYKCRHPGC---VKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEH 70
           H   K + C   GC   ++ F     L  H R H  +KP+KC    C K +     L  H
Sbjct: 29  HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88

Query: 71  IPKHKDSKHLKTHICQY--CGKSYTQETYLSKHMQKHAERSDKRPPIIGIP 119
           +  H      K ++C++  C K+++  +  +KH  +    S+++P +  +P
Sbjct: 89  LRSHTGE---KPYMCEHEGCSKAFSNASDRAKHQNR--THSNEKPYVCKLP 134


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query: 10  MEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETAL 67
           +E RR H       C +PGC K +++ S+L++H R H  +KPYKC    C   F     L
Sbjct: 10  LEKRRIHY------CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63

Query: 68  LEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
             H  KH  +K  +   C  C +S+++  +L+ HM++H
Sbjct: 64  TRHYRKHTGAKPFQ---CGVCNRSFSRSDHLALHMKRH 98



 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 14  RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
           RTHTG+KPYKC   GC   F++   L  H R H   KP++C  C + F     L  H+ +
Sbjct: 38  RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

Query: 74  HKD 76
           H++
Sbjct: 98  HQN 100


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 15  THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIP 72
            HTG+KP++C   GC K FS   NL++H R H  D+PY C  + C K F   T L  HI 
Sbjct: 56  VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115

Query: 73  KHKDSK 78
            H  +K
Sbjct: 116 THAKAK 121



 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 14  RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
           R HTGD+PY C   GC K F+Q +NL+SH   H   K
Sbjct: 85  RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121



 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 29  CVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKHKDSKHLKTHICQ 86
           C KAF + S L+ H   H  +KP++C    C K F  +  L  H+  H      + ++C 
Sbjct: 40  CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD---RPYVCP 96

Query: 87  Y--CGKSYTQETYLSKHMQKHAE 107
           +  C K + Q T L  H+  HA+
Sbjct: 97  FDGCNKKFAQSTNLKSHILTHAK 119



 Score = 33.1 bits (74), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 56  SCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
            C K F D +A+ +H+  H      + H+C  CGK++ + + L +H   H
Sbjct: 12  GCTKMFRDNSAMRKHLHTHGP----RVHVCAECGKAFVESSKLKRHQLVH 57


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 21  PYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHL 80
           P+KC    C K FS+   L++H RCH   KPYKC +C     D ++L +H+  H D +  
Sbjct: 8   PHKCE--VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65

Query: 81  KTHICQYCGKSYTQETYLSKHMQKHAERS 109
           K  IC Y  ++ +Q   L+ H++ H   S
Sbjct: 66  KCQICPYASRNSSQ---LTVHLRSHTGDS 91



 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          R HTG KPYKC+   C  A +  S+L  H R H  ++P+KC  C     + + L  H+  
Sbjct: 29 RCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86

Query: 74 H 74
          H
Sbjct: 87 H 87



 Score = 34.7 bits (78), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 51  PYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
           P+KC  C KCF  +  L  H+  H   K  K   C Y   +    + L+KH++ H   SD
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDY---AAADSSSLNKHLRIH---SD 61

Query: 111 KRP 113
           +RP
Sbjct: 62  ERP 64


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FSQ +NL +H R H   KP++C  C + F   T L +HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ +       +H + H  + D
Sbjct: 62  PF---ACDICGRKFATLHTRDRHTKIHLRQKD 90



 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 11/73 (15%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          R HTG KP++CR   C++ FSQ + L  H R H  +KP+ C+ C + F    A L     
Sbjct: 27 RIHTGQKPFQCR--ICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF----ATL----- 75

Query: 74 HKDSKHLKTHICQ 86
          H   +H K H+ Q
Sbjct: 76 HTRDRHTKIHLRQ 88


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FSQ +NL +H R H   KP++C  C + F  + +L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ +      ++H + H  + D
Sbjct: 62  PF---ACDICGRKFATLHTRTRHTKIHLRQKD 90



 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 11/73 (15%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          R HTG KP++CR   C++ FSQ ++L +H R H  +KP+ C+ C + F    A L     
Sbjct: 27 RIHTGQKPFQCR--ICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF----ATL----- 75

Query: 74 HKDSKHLKTHICQ 86
          H  ++H K H+ Q
Sbjct: 76 HTRTRHTKIHLRQ 88



 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          RTHTG+KP+ C    C + F+ L     H++ H   K
Sbjct: 55 RTHTGEKPFAC--DICGRKFATLHTRTRHTKIHLRQK 89


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 14  RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHI 71
           R HTG+KP+ C  PGC K F++  NL+ H R H  +KP+KC    C + F + +   +H+
Sbjct: 83  RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142

Query: 72  PKHKDSK 78
             H   K
Sbjct: 143 HVHTSDK 149



 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 13  RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
           +RTHTG+KP+KC   GC + F+  S+ + H   H +DK
Sbjct: 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149



 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 31  KAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIPKHKDSKHLKTHICQYC 88
           K+F     L +H R H  +KP+ C    C K F     L  H   H   K  K    + C
Sbjct: 70  KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF-EGC 128

Query: 89  GKSYTQETYLSKHMQKHAERSDKRPPIIG 117
            + +   +   KHM  H   SDK  P  G
Sbjct: 129 DRRFANSSDRKKHM--HVHTSDKSGPSSG 155


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 20  KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKHKDS 77
           +P+ C +PGC K + +LS+LQ HSR H  +KPY+C+   C + F     L  H  +H   
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG- 63

Query: 78  KHLKTHICQYCGKSYTQETYLSKHMQKHA 106
             +K   C+ C + +++  +L  H + H 
Sbjct: 64  --VKPFQCKTCQRKFSRSDHLKTHTRTHT 90



 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 14  RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
           R HTG+KPY+C    C + FS+   L+ H R H   KP++C +C + F     L  H   
Sbjct: 29  RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88

Query: 74  HKDSKHLKTHICQY--CGKSYTQETYLSKHMQKH 105
           H   K      C++  C K + +   L +H   H
Sbjct: 89  HTGEKPFS---CRWPSCQKKFARSDELVRHHNMH 119


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FS  SNL  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ + +     +H + H  + D
Sbjct: 62  PF---ACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 8  LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETAL 67
          LT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F      
Sbjct: 22 LTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78

Query: 68 LEHIPKH 74
            H   H
Sbjct: 79 KRHTKIH 85


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FSQ  +L  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ + +     +H + H  + D
Sbjct: 62  PF---ACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 8  LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETAL 67
          LT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F      
Sbjct: 22 LTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78

Query: 68 LEHIPKH 74
            H   H
Sbjct: 79 KRHTKIH 85



 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 8  LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          LT  IR THTG+KP+ C    C + F++    + H++ H   K
Sbjct: 50 LTTHIR-THTGEKPFAC--DICGRKFARSDERKRHTKIHLRQK 89


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 90

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          RTHTG+KPY C   GC   F++   L  H R H   +P++C  C + F     L  H+ +
Sbjct: 29 RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88

Query: 74 H 74
          H
Sbjct: 89 H 89



 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 24  CRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIPKHKDSKHLK 81
           C + GC K +++ S+L++H R H  +KPY C  + C   F     L  H  KH   +  +
Sbjct: 9   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68

Query: 82  THICQYCGKSYTQETYLSKHMQKH 105
              CQ C +++++  +L+ HM++H
Sbjct: 69  ---CQKCDRAFSRSDHLALHMKRH 89


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 89

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          RTHTG+KPY C   GC   F++   L  H R H   +P++C  C + F     L  H+ +
Sbjct: 28 RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

Query: 74 H 74
          H
Sbjct: 88 H 88



 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 24  CRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIPKHKDSKHLK 81
           C + GC K +++ S+L++H R H  +KPY C  + C   F     L  H  KH   +  +
Sbjct: 8   CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67

Query: 82  THICQYCGKSYTQETYLSKHMQKH 105
              CQ C +++++  +L+ HM++H
Sbjct: 68  ---CQKCDRAFSRSDHLALHMKRH 88


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FS+ ++L  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ + +     +H + H  + D
Sbjct: 62  PF---ACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 7  ELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETA 66
          +LT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F     
Sbjct: 21 DLTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77

Query: 67 LLEHIPKH 74
             H   H
Sbjct: 78 RKRHTKIH 85


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 5/97 (5%)

Query: 16  HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS--CYKCFVDETALLEHIPK 73
           HTG+KP+ C+  GC K F+ L +L  HS  H  +K + C+S  C   F  +  + +H  +
Sbjct: 37  HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96

Query: 74  HKDSKHLKTHICQY--CGKSYTQETYLSKHMQKHAER 108
             + K +  ++C +  CGK++ +   L  H   H ++
Sbjct: 97  FHNIK-ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132



 Score = 31.6 bits (70), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 15  THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK- 73
           +HT   PY+C H GC K FS  S L+ H + H      K +SC       T  L+H+ + 
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187

Query: 74  HKD 76
           H+D
Sbjct: 188 HQD 190



 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSH 42
          THTG+K + C   GC   F+  +N++ H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKH 93


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FS+ + L  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ + +     +H + H  + D
Sbjct: 62  PF---ACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 7  ELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETA 66
          ELT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F     
Sbjct: 21 ELTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77

Query: 67 LLEHIPKH 74
             H   H
Sbjct: 78 RKRHTKIH 85



 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 8  LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          LT  IR THTG+KP+ C    C + F++    + H++ H   K
Sbjct: 50 LTTHIR-THTGEKPFAC--DICGRKFARSDERKRHTKIHLRQK 89


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FS+   L  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
                 C  CG+ + +     +H + H  + D
Sbjct: 62  PF---ACDICGRKFARSDERKRHTKIHLRQKD 90



 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 7  ELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETA 66
          ELT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F     
Sbjct: 21 ELTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77

Query: 67 LLEHIPKH 74
             H   H
Sbjct: 78 RKRHTKIH 85


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Zinc Finger Protein 24
          Length = 72

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
          +KPY C    C KAFS+ S L  H R H  +KPYKC  C K F   + L+ H
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61



 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 8  LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTD 49
          + ++ +R HTG+KPYKC    C KAFSQ S L +H R H + 
Sbjct: 29 ILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSG 68



 Score = 37.0 bits (84), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 49  DKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
           +KPY C  C K F   + L++H   H   K  K   C  CGK+++Q + L  H + H
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK---CLECGKAFSQNSGLINHQRIH 65


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domain Of Zinc Finger Protein 435
          Length = 77

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDS 77
          + YKC    C K+FS  S+L  H R H  +KPYKC+ C K F+  + L+ H   H  S
Sbjct: 17 RRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72



 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          RRTHTG+KPYKC    C KAF Q S+L  H R H    P
Sbjct: 38 RRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 33.5 bits (75), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 50  KPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHA 106
           + YKC+ C K F   + L +H   H   K  K   C  CGK++ Q ++L  H + H 
Sbjct: 17  RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK---CDECGKAFIQRSHLIGHHRVHT 70


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 29  CVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYC 88
           C + F++  NL  H R H  ++PY C+ C+K F  +  L +H   H   K  K   CQ C
Sbjct: 23  CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK---CQEC 79

Query: 89  GKSYTQETYLSKHMQKHAERS 109
           GK + Q   L+ H   H + S
Sbjct: 80  GKGFCQSRTLAVHKTLHMQTS 100



 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          RTHT ++PY C    C KAF +  +L+ H   H  +KP+KC  C K F     L  H   
Sbjct: 38 RTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95

Query: 74 H 74
          H
Sbjct: 96 H 96



 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 77  SKHLKTHICQYCGKSYTQETYLSKHMQKHAERSDKRPPIIGIPRAALEN 125
           SK  K  IC++CG+ +T+   L  H + H   +D+RP    I   A   
Sbjct: 12  SKTKKEFICKFCGRHFTKSYNLLIHERTH---TDERPYTCDICHKAFRR 57


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
          Length = 87

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 7  ELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETA 66
          ELT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F     
Sbjct: 20 ELTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 76

Query: 67 LLEHIPKH 74
             H   H
Sbjct: 77 RKRHTKIH 84



 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FS+   L  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKH 105
                 C  CG+ + +     +H + H
Sbjct: 61  PF---ACDICGRKFARSDERKRHTKIH 84


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
          Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 7  ELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETA 66
          ELT  IR  HTG KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F     
Sbjct: 21 ELTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77

Query: 67 LLEHIPKH 74
             H   H
Sbjct: 78 RKRHTKIH 85



 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 19  DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
           ++PY C    C + FS+   L  H R H   KP++C  C + F     L  HI  H   K
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61

Query: 79  HLKTHICQYCGKSYTQETYLSKHMQKH 105
                 C  CG+ + +     +H + H
Sbjct: 62  PF---ACDICGRKFARSDERKRHTKIH 85


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 29  CVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYC 88
           C K+F + S L +H   H   +PY C  C K F  ++ + +H   H      K H CQ C
Sbjct: 7   CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE---KPHKCQVC 63

Query: 89  GKSYTQETYLSKHMQKHA 106
           GK+++Q + L  H +KH 
Sbjct: 64  GKAFSQSSNLITHSRKHT 81



 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
          H+  +PY C++  C K F Q S+++ H+  H  +KP+KC  C K F   + L+ H  KH
Sbjct: 24 HSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80



 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 52  YKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHAERSDK 111
           + C  C K F   + L  H+  H D++    + CQYCGK + Q++ + KH   H      
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTR---PYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58

Query: 112 RPPIIG 117
           +  + G
Sbjct: 59  KCQVCG 64


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 29  CVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYC 88
           C K F  + +L  H   H  +KPY C  C   F  +  +  H+  H D    K +ICQ C
Sbjct: 13  CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH-DGSVGKPYICQSC 71

Query: 89  GKSYTQETYLSKHMQK 104
           GK +++  +L+ H+++
Sbjct: 72  GKGFSRPDHLNGHIKQ 87



 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQ--TDKPYKCNSCYKCFVDETALLEHI 71
          +H+G+KPY C  P C   F +   +  H R H     KPY C SC K F     L  HI
Sbjct: 29 SHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query: 27  PGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQ 86
           P C K F     L+ H+R H  +KP++C  C KC+  +  LLEH  ++  ++  +   C 
Sbjct: 11  PTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70

Query: 87  YCGKSYTQETYLSKHMQKHA 106
            C +++ +   L  HM  H 
Sbjct: 71  VCQETFRRRMELRLHMVSHT 90



 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 14  RTHTGDKPYKCRHPGCVKAFSQLSNLQSHS--RC-HQTDKPYKCNSCYKCFVDETALLEH 70
           R HTG+KP++C  P C K + +  NL  H    C +++++ + C+ C + F     L  H
Sbjct: 28  RKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85

Query: 71  IPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQK 104
           +  H      K   C  C + + Q+  L  HM K
Sbjct: 86  MVSHTGEMPYK---CSSCSQQFMQKKDLQSHMIK 116


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
          HTG+KP+ C+  GC K F+ L +L  HS  H  +K + C+S
Sbjct: 28 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68



 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 20  KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIPKHKDS 77
           K Y C    C  A+++   LQ+H   H  +KP+ C    C K F     L  H   H   
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61

Query: 78  KHLKTHICQYCGKSYTQETYLSKHMQK 104
           K+  T     C   +T +  + KH  +
Sbjct: 62  KNF-TCDSDGCDLRFTTKANMKKHFNR 87



 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSH 42
          THTG+K + C   GC   F+  +N++ H
Sbjct: 57 THTGEKNFTCDSDGCDLRFTTKANMKKH 84


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          DKPYKC    C  +F    NL SH   H  +KPY+CN C   F     L  H   H   K
Sbjct: 15 DKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72



 Score = 35.4 bits (80), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
           HTG+KPY+C    C   F++ +NL++H+R H  +KP
Sbjct: 39 VHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73



 Score = 31.6 bits (70), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 49  DKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHA 106
           DKPYKC+ C   F  +  L  H   H   K  +   C  CG  + +   L  H + H+
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYR---CNICGAQFNRPANLKTHTRIHS 69


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 41  SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHL-KTHICQYCGKSYTQETYLS 99
           S  R H  +KPY C+ C K F  +  L  H  ++ D   +    +C  CGK++T+   ++
Sbjct: 5   SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64

Query: 100 KHMQKHA 106
           +H    A
Sbjct: 65  RHADNCA 71



 Score = 35.4 bits (80), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSH-SRCHQTD---KPYKCNSCYKCFVDETALLE 69
          RTHTG+KPY C H  C K F Q   L  H  R H  +     + C+ C K F     +  
Sbjct: 8  RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 70 HI 71
          H 
Sbjct: 66 HA 67


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domains From Human Krueppel-Like Factor 10
          Length = 72

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKH 74
          + + C HPGC K + + S+L++H+R H  +KP+ C+   C + F     L  H   H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 36.6 bits (83), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
          RTHTG+KP+ C   GC + F++   L  H R H
Sbjct: 40 RTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 76  DSKHLKTHICQY--CGKSYTQETYLSKHMQKH 105
           DS  +++HIC +  CGK+Y + ++L  H + H
Sbjct: 11  DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 20  KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
           KP++CR   C++ FS+  +L +H R H  +KP+ C+ C + F    A  +   +H+D +H
Sbjct: 2   KPFQCR--ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF----ARSDERKRHRDIQH 55

Query: 80  ----LKTHICQYCGKSYTQETYLSKHMQKHAER 108
               L+  + +   K+Y  E  +++  +   ER
Sbjct: 56  ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
          Length = 73

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
          +PY C    C + FS+   L  H R H   KP++C  C + F     L  HI  H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72



 Score = 35.0 bits (79), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 5  GQELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
            ELT  IR  HTG KP++CR   C++ FS+  +L +H R H
Sbjct: 34 SDELTRHIR-IHTGQKPFQCR--ICMRNFSRSDHLTTHIRTH 72



 Score = 30.0 bits (66), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 50  KPYKC--NSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHA 106
           +PY C   SC + F     L  HI  H   K  +   C+ C +++++  +L+ H++ H 
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ---CRICMRNFSRSDHLTTHIRTHT 73


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 29 CVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
          C +AF++  +L+ H R H  +KPY C  C + F     L+ H  K
Sbjct: 8  CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52



 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 52  YKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQK 104
           + C  C + F  +  L  H   H + K    + C  C +++T+   L +H QK
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEK---PYPCGLCNRAFTRRDLLIRHAQK 52


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 37.0 bits (84), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKD 76
          ++P+ C    C K +   S L  H R H   +P  C  C KCF D++ +  H+  H++
Sbjct: 2  ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57



 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 48  TDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
           +++P+ CN C K + D + L  H   H      +   C  CGK +  ++ +++H++ H
Sbjct: 1   SERPFFCNFCGKTYRDASGLSRHRRAHLG---YRPRSCPECGKCFRDQSEVNRHLKVH 55


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 36.6 bits (83), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 17  TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKD 76
           +GDK Y C+   C K+F+  S    H   H   +PY C  C K F  +  L+ H+  H  
Sbjct: 6   SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62

Query: 77  SKHLKTHICQYCGKSYTQETYLSKHM 102
              +K + C  C K +       +H+
Sbjct: 63  ---IKPYECNICAKRFMWRDSFHRHV 85



 Score = 35.8 bits (81), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHI 71
          H G +PY C    C K F    +L  H + H   KPY+CN C K F+   +   H+
Sbjct: 32 HLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85



 Score = 26.9 bits (58), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 49  DKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
           DK Y C  C K F  ++    H+  H     L+ + C  CGK +  + +L  HM+ H
Sbjct: 8   DKLYPCQ-CGKSFTHKSQRDRHMSMHLG---LRPYGCGVCGKKFKMKHHLVGHMKIH 60


>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
          Length = 32

 Score = 36.2 bits (82), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQ 47
          D+PY C HPGC KAF +  +L  H + HQ
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 35.8 bits (81), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C KAFSQ S L  H R H  +KP
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP 40



 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L  H   H   K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 35.0 bits (79), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C KAF+Q +NL  H R H  +KP
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKP 40



 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY+C  C K F  +  L +H   H   K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39


>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
          Length = 47

 Score = 34.7 bits (78), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          DK ++C  PGC K F +  N++SH + H  D+
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 34.3 bits (77), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C+   C KAFSQ ++L  H R H  +KP
Sbjct: 10 EKPYECKE--CGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY+C  C K F   T L++H   H   K
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 33.9 bits (76), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          KPY+C    C KAFSQ S L  H R H  +KP
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKP 40



 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          KPY+CN C K F   + L  H   H   K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
          Zinc Finger Protein 32
          Length = 41

 Score = 33.5 bits (75), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +G+KPY+C+   C K+FSQ  +L  H R H    P
Sbjct: 6  SGEKPYQCKE--CGKSFSQRGSLAVHERLHTGSGP 38


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 33.1 bits (74), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 29  CVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYC 88
           C +++  L++L+ H   H  +K Y C  C K F       +H   H   +  +   C  C
Sbjct: 28  CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ---CLAC 84

Query: 89  GKSYTQETYLSKHMQ 103
           GKS+    ++S H++
Sbjct: 85  GKSFINYQFMSSHIK 99


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+KC    C K F+Q S L SH R H  +KP
Sbjct: 10 EKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKP 40


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K F+Q S+L +H R H  +KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L  H   H   K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C KAF+  SNL +H + H  +KP
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY+C  C K F D + L  H   H   K
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 32.3 bits (72), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 29 CVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
          C K F     L  H R H  +KPYKC  C      +T+L  H+ +H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55



 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSH 42
          RTHTG+KPYKC    C  A +Q ++L+ H
Sbjct: 25 RTHTGEKPYKC--EFCEYAAAQKTSLRYH 51


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 32.0 bits (71), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C    C K FSQ S L +H R H  +KP
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40



 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY CN C K F  ++ L  H   H   K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
          Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 32.0 bits (71), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK- 73
          +HT   PY+C H GC K FS  S L+ H + H      K +SC       T  L+H+ + 
Sbjct: 25 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 84

Query: 74 HKD 76
          H+D
Sbjct: 85 HQD 87



 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 22 YKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIPKHKDSKH 79
          Y C    C KAF + + L+ H   H    PY+C    C K F   + L  H   H     
Sbjct: 2  YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 80 LKTHICQYCGKSYT 93
           K   C + GK++T
Sbjct: 62 KKDDSCSFVGKTWT 75


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+KC+   C KAF Q  +L SH R H  +KP
Sbjct: 10 EKPFKCKE--CGKAFRQNIHLASHLRIHTGEKP 40


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
          The Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 32.0 bits (71), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALL 68
          +HT   PY+C H GC K FS  S L+ H + H      K +SC   FV +T  L
Sbjct: 25 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS--FVGKTWTL 76



 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 22 YKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC--NSCYKCFVDETALLEHIPKHKDSKH 79
          Y C    C KAF + + L+ H   H    PY+C    C K F   + L  H   H     
Sbjct: 2  YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 80 LKTHICQYCGKSYT 93
           K   C + GK++T
Sbjct: 62 KKDDSCSFVGKTWT 75


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 31.6 bits (70), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K F+Q S+L  H R H   KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP 40



 Score = 30.4 bits (67), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L  H   H   K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGK 39



 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 81  KTHICQYCGKSYTQETYLSKHMQKH 105
           K + C  CGK +TQ ++L++H + H
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRRVH 35


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C    C KAF   S LQ H R H  +KP
Sbjct: 10 EKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY C  C K F+ ++ L EH   H   K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP++C    C K F+Q S+L SH R H  +KP
Sbjct: 10 EKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKP 40


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 31.2 bits (69), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K F+Q S+L +H R H   KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKP 40



 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 49 DKPYKCNSCYKCFVDETALLEH 70
          +KPYKCN C K F   + L  H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANH 31


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 31.2 bits (69), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C KAF   SNL +H   H  +KP
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L  H   H   K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39


>pdb|1X3C|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 292
          Length = 73

 Score = 31.2 bits (69), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9  TMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRC-HQTDKP 51
          ++E    ++  +PY+C H GC  AF+   NL  H +  H++D P
Sbjct: 15 SLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP 58


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
          Zinc Finger Protein 32
          Length = 42

 Score = 30.8 bits (68), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDS 77
          +KPY+C+ C K F  + +L+ HI  H  S
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37



 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C KAFSQ  +L  H R H    P
Sbjct: 9  EKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGP 39


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
          Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 30.8 bits (68), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRC-HQTDKPYKCN--SCYKCFVDETALLEHIPK 73
          +G     C  PGC + FS    L  H +  H   K + C   +C K F  +  L EH+  
Sbjct: 3  SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62

Query: 74 HKDSKHLKTHICQYCGKS 91
          H D+   + +IC++ G S
Sbjct: 63 HSDT---RDYICEFSGPS 77



 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 6  QELTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
          Q L    +  H   K + C  P C K+F+   +L+ H + H   + Y C
Sbjct: 23 QYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.8 bits (68), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C+   C KAF+Q ++L  H + H  +KP
Sbjct: 10 EKPYECK--VCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY+C  C K F  +  L +H   H   K
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
          Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 30.8 bits (68), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+ C  PGC   FS+   L  H R H   KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.8 bits (68), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +K YKC    C K FSQ S+LQ+H R H  +KP
Sbjct: 10 EKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKP 40


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.8 bits (68), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKH 74
          ++PY CN C K F   + L+EH+ +H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
           Zinc Finger Protein 473
          Length = 42

 Score = 30.8 bits (68), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 81  KTHICQYCGKSYTQETYLSKHMQKHAERSD 110
           K ++CQ CGK++TQ + LS H + H   S 
Sbjct: 9   KPYVCQECGKAFTQSSCLSIHRRVHTGESG 38



 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTD 49
          +G+KPY C+   C KAF+Q S L  H R H  +
Sbjct: 6  SGEKPYVCQE--CGKAFTQSSCLSIHRRVHTGE 36


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 30.8 bits (68), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L+ H   H   K
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39



 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K F+Q S+L  H   H  +KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKP 40


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 30.8 bits (68), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP++C    C KAF+  SNL  H R H  +KP
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGEKP 40


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 30.0 bits (66), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   ++L  H   H   K
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39



 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C KAF   S+L  H   H  +KP
Sbjct: 10 EKPYKCNE--CGKAFRARSSLAIHQATHSGEKP 40


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L  H   H   K
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEK 39



 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K F+Q S+L  H   H  +KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 81  KTHICQYCGKSYTQETYLSKHMQKHA 106
           K +IC  CGKS+ Q+++L++H + H 
Sbjct: 11  KPYICNECGKSFIQKSHLNRHRRIHT 36



 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C    C K+F Q S+L  H R H  +KP
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 27.3 bits (59), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY CN C K F+ ++ L  H   H   K
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEK 39


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP++C    C K+FS  S L +H R H  +KP
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKP 40


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C KAFS  ++L  H R H  +KP
Sbjct: 10 EKPYECD--VCRKAFSHHASLTQHQRVHSGEKP 40


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          T +KP++C    C K+F Q S L SH   H  +KP
Sbjct: 8  TAEKPFRCDT--CDKSFRQRSALNSHRMIHTGEKP 40



 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KP++C++C K F   +AL  H   H   K
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C    C KAFS  S L  H R H  +KP
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY C+ C K F  ++ L+ H+  H   K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39



 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 81  KTHICQYCGKSYTQETYLSKHMQKHA 106
           K + C  CGK+++ ++YL  HM+ H+
Sbjct: 11  KPYGCSECGKAFSSKSYLIIHMRTHS 36


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
          +KPYKC+ C K F  ++ L  H   H   +H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          ++P+KCN C K F+    L++H   H   K
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEK 39



 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          ++P+KC    C K+F Q ++L  H R H  +KP
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP 40


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          T +KPYKC    C KAF   SNL +H   H  +K
Sbjct: 8  TKEKPYKCYE--CGKAFRTRSNLTTHQVIHTGEK 39


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          + PY+C    C KAFS+   L SH R H  +KP
Sbjct: 10 ENPYECHE--CGKAFSRKYQLISHQRTHAGEKP 40


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C KAFS  S+L +H   H   KP
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY+CN C K F   ++L  H   H   K
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          KPY C    C KAFS  S+L +H   H  +KP
Sbjct: 11 KPYMCNE--CGKAFSVYSSLTTHQVIHTGEKP 40


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 41  SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSK 100
           S  R H  +KPY+C  C+  F     +  HI + K ++++    C +C     +++ L  
Sbjct: 5   SSGRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDLGV 63

Query: 101 HMQK 104
           H++K
Sbjct: 64  HLRK 67


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 39 LQSHSRCHQTDKPYKCNSC 57
          L+ H R H TD+P+KCN C
Sbjct: 25 LRIHERIHCTDRPFKCNYC 43


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          KPYKCN C K F   + L  H   H   K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39



 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          KPYKC    C K F+Q S+L  H   H  +KP
Sbjct: 11 KPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40


>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
          Bklf
          Length = 35

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
          TG KP++C  P C ++FS+  +L  H + H
Sbjct: 3  TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
          +KPY+C    C KAF+  SNL  H R H
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTH 35



 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKH 74
          +KPY+CN C K F  ++ L+ H   H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKH 74
          +KPY+C+ C K F+  + L+ H   H
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTH 35


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY CN C K F  ++ L+ H   H   K
Sbjct: 8  EKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K F   S L  H R H  +KP
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPYKCN C K F   + L  H   H   K
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          +KPYKC    C K+F+  S L+ H +CH  ++
Sbjct: 10 EKPYKC--SDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +G KPY C    C KAF   S L  H R H  +KP
Sbjct: 6  SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 76  DSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
            S  +K + C  CGK++  ++YL  HM+ H
Sbjct: 4   GSSGVKPYGCSECGKAFRSKSYLIIHMRTH 33



 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          KPY C+ C K F  ++ L+ H+  H   K
Sbjct: 9  KPYGCSECGKAFRSKSYLIIHMRTHTGEK 37


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
          Human Zinc Finger Protein 224
          Length = 46

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+KC    C K FS+ S L  H + H  +KP
Sbjct: 10 EKPFKCVE--CGKGFSRRSALNVHHKLHTGEKP 40


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKH 74
          +KPY CN C K FV    L +H+  H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C    C KAF+  SNL  H + H   KP
Sbjct: 10 EKPYICAE--CGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 81  KTHICQYCGKSYTQETYLSKHMQKHAERSDKRP 113
           K +IC  CGK++T  + L KH + H ++    P
Sbjct: 11  KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          ++PY C    C KAF+  SNL  H + H  +KP
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          ++PY C  C K F D + L++H   H   K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39



 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 83  HICQYCGKSYTQETYLSKHMQKH 105
           +IC  CGK++T  + L KH + H
Sbjct: 13  YICTVCGKAFTDRSNLIKHQKIH 35


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 84  ICQYCGKSYTQETYLSKHMQKHA 106
           +C  CGK++ Q + LSKH + H+
Sbjct: 12  VCNECGKTFRQSSCLSKHQRIHS 34



 Score = 27.3 bits (59), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +G KP  C    C K F Q S L  H R H  +KP
Sbjct: 6  SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKP 38


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 28.5 bits (62), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKH 74
          +KPY+CN C K F+ ++ L+ H   H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C +  C KAF   + L  H R H  +KP
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C KAFS   +L  H R H   KP
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY C+   C K+F   S L  H R H  +KP
Sbjct: 10 EKPYNCKE--CGKSFRWASCLLKHQRVHSGEKP 40


>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
          Length = 30

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          KPY+C+ C + F D T+ + H+  H   K
Sbjct: 2  KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+KC    C K+++Q  +L  H R H  +KP
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP 40


>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 46

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
          +KP KC  C K F  ++ L+ H   H D KH
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKH 40


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +G+KP+ C    C KAFS  S L  H + H  +KP
Sbjct: 6  SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KP+ C+ C K F  ++ LL H   H + K
Sbjct: 8  EKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          KP++C H  C K+F    NL +H R H  +K
Sbjct: 11 KPFECTH--CGKSFRAKGNLVTHQRIHTGEK 39


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          +G+KPY C    C K FS  S L  H R H  +K
Sbjct: 6  SGEKPYGCNE--CGKDFSSKSYLIVHQRIHTGEK 37



 Score = 26.9 bits (58), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
          +KPY CN C K F  ++ L+ H   H   K
Sbjct: 8  EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 50 KPYKCNSCYKCFVDETALLEH 70
          KPY+C  C K F+  T+L+ H
Sbjct: 11 KPYECIECGKAFIQNTSLIRH 31


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          +KPYKC    C K +++  NL  H R H  +K
Sbjct: 10 EKPYKCED--CGKGYNRRLNLDMHQRVHMGEK 39


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C KAF + ++L  H R H   +P
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 49 DKPYKCNSCYKCFVDETALLEH 70
          +KPYKC+ C K F   T L EH
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEH 31


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          ++ Y+C    C KAF Q S L  H R H+ +KP
Sbjct: 10 ERHYECSE--CGKAFIQKSTLSMHQRIHRGEKP 40


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 80  LKTHICQYCGKSYTQETYLSKHMQKHAERSD 110
           +K ++C  CGK++  ++YL  H + H   S 
Sbjct: 10  MKPYVCNECGKAFRSKSYLIIHTRTHTGESG 40


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 42

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTD 49
          +G+ PY+C    C KAF++   L SH R H  +
Sbjct: 6  SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
          KPY+C+   C K F Q+ +L  H R H  ++
Sbjct: 11 KPYECKE--CRKTFIQIGHLNQHKRVHTGER 39


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 81  KTHICQYCGKSYTQETYLSKHMQKH 105
           K ++C+ CGK + Q + L+ H++ H
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHH 25


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+KC    C K F   S   SH R H  +KP
Sbjct: 10 EKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKP 40


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 27.3 bits (59), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDS 77
          +KPYKC +C   FV    L  H+  H  S
Sbjct: 9  EKPYKCETCGARFVQVAHLRAHVLIHTGS 37


>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2,
          Nmr, 20 Structures
          Length = 38

 Score = 27.3 bits (59), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQ 47
          DKP+ C  PGC + F+   +L  H   H+
Sbjct: 4  DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 27.3 bits (59), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 49 DKPYKCNSCYKCFVDETALLEH 70
          +KPYKC  C K F D ++  +H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQH 31



 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C KAF   S+   H R H   +P
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRP 40


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K+F   S+L  H R H  +KP
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +K YKC    C K FS+ S L  H + H  +KP
Sbjct: 10 EKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKP 40


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 27.3 bits (59), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +K +KCR   C   FSQ S+L+ H   H  +KP
Sbjct: 10 EKTWKCRE--CDMCFSQASSLRLHQNVHVGEKP 40


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 85  CQYCGKSYTQETYLSKHMQKHAERSDKRP 113
           C  CGK+++   +LSKH   HA  +   P
Sbjct: 15  CNECGKTFSHSAHLSKHQLIHAGENPSGP 43


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
          Length = 66

 Score = 27.3 bits (59), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 52  YKCNSCYKCFVDETALLEH-IPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQ 103
           Y+C  C + +   +    H +  HK  +++K + C +C K +T++  ++ H++
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHK--RNVKVYPCPFCFKEFTRKDNMTAHVK 61


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 49 DKPYKCNSCYKCFVDETALLEHIPKH 74
          +KPY C  C + F D   L++H   H
Sbjct: 8  EKPYSCAECKETFSDNNRLVQHQKMH 33


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 26.9 bits (58), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          K +KC    C K F+Q S+L  H R H  +KP
Sbjct: 11 KLFKCNE--CKKTFTQSSSLTVHQRIHTGEKP 40


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPYKC    C K ++   NL  H + H  ++P
Sbjct: 10 EKPYKCEK--CGKGYNSKFNLDMHQKVHTGERP 40


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 26.9 bits (58), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP+ C    C KAFS    L  H R H  +KP
Sbjct: 10 EKPFDCID--CGKAFSDHIGLNQHRRIHTGEKP 40


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
           Zinc Finger Protein 473
          Length = 44

 Score = 26.9 bits (58), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 85  CQYCGKSYTQETYLSKHMQKHAERS 109
           C  C + +TQ  YL +H + HA +S
Sbjct: 15  CSKCDRVFTQRNYLVQHERTHARKS 39


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 26.9 bits (58), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KP++CR   C K+FS  S L  H R H  + P
Sbjct: 10 EKPHECRE--CGKSFSFNSQLIVHQRIHTGENP 40


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 26.9 bits (58), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
          +KPY+C    C K+F++ S L  H + H  +KP
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,740,672
Number of Sequences: 62578
Number of extensions: 252447
Number of successful extensions: 1042
Number of sequences better than 100.0: 165
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 438
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)