RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8183
(223 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 89.0 bits (222), Expect = 2e-23
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
+ P+KC C K FS+ L++H RCH KPYKC +C D ++L +H+ H
Sbjct: 2 SSGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 75 KDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
D + K CQ C + + L+ H++ H
Sbjct: 60 SDERPFK---CQICPYASRNSSQLTVHLRSH 87
Score = 72.5 bits (179), Expect = 5e-17
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
R HTG KPYKC+ C A + S+L H R H ++P+KC C + + L H
Sbjct: 28 MRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 60.9 bits (149), Expect = 1e-12
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
R H+ ++P+KC+ C A S L H R H D
Sbjct: 56 LRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGDSGPSS 95
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 89.1 bits (222), Expect = 3e-23
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
R HTG+KPY+C C + FS+ L+ H R H KP++C +C + F L H
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Query: 74 HKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
H K C K + + L +H H
Sbjct: 89 HTGEKPFSCRWPS-CQKKFARSDELVRHHNMH 119
Score = 79.5 bits (197), Expect = 2e-19
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS--CYKCFVDETALLEHIPKH 74
+ +P+ C +PGC K + +LS+LQ HSR H +KPY+C+ C + F L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL------- 54
Query: 75 KDSKHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+H + H C+ C + +++ +L H + H
Sbjct: 55 --KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 56.4 bits (137), Expect = 9e-11
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
RTHTG+KP+ CR P C K F++ L H H
Sbjct: 86 TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 88.4 bits (220), Expect = 2e-22
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHI 71
R HTG+KP+KC GC K++S+L NL++H R H +KPY C C K F +
Sbjct: 60 RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF----SNASDR 115
Query: 72 PKHKDSKHL--KTHICQY--CGKSYTQETYLSKHMQKH 105
KH++ H K ++C+ C K YT + L KH++
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 59.1 bits (144), Expect = 2e-11
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
RTH+ +KPY C+ PGC K ++ S+L+ H +
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 59.1 bits (144), Expect = 2e-11
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSH---SRCHQTDKPYKCNSC-----YKCFVDETALLEHI 71
+ GC + F L H H K + C+ + F + L+ H+
Sbjct: 2 TDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 72 PKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
+H K K C KSY++ L H++ H
Sbjct: 60 RRHTGEKPHKCTFEG-CRKSYSRLENLKTHLRSH 92
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 82.5 bits (205), Expect = 7e-21
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHK 75
+G C C K F + +L H H +KPY C C F + + H+ H
Sbjct: 2 SSGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH- 58
Query: 76 DSKHLKTHICQYCGKSYTQETYLSKHMQK 104
D K +ICQ CGK +++ +L+ H+++
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 67.9 bits (167), Expect = 2e-15
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH--QTDKPYKCNSCYKCFVDETALLEH 70
+ +H+G+KPY C C F + + H R H KPY C SC K F L H
Sbjct: 27 KLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Query: 71 I 71
I
Sbjct: 85 I 85
Score = 28.2 bits (64), Expect = 0.72
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
C+ CGK + +L++H H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSH 30
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 82.1 bits (204), Expect = 1e-20
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
R K + C+ C + F++ NL H R H ++PY C+ C+K F + L +H
Sbjct: 9 RLPSKTKKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY 66
Query: 73 KHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
H K K CQ CGK + Q L+ H H
Sbjct: 67 IHSKEKPFK---CQECGKGFCQSRTLAVHKTLH 96
Score = 62.5 bits (153), Expect = 3e-13
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
R H+ +KP+KC+ C K F Q L H H S
Sbjct: 65 RYIHSKEKPFKCQE--CGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 49.7 bits (120), Expect = 2e-08
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 37 SNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQET 96
S +T K + C C + F LL H H D + C C K++ ++
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT---CDICHKAFRRQD 59
Query: 97 YLSKHMQKH 105
+L H H
Sbjct: 60 HLRDHRYIH 68
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 83.3 bits (207), Expect = 4e-20
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
G+KPY C C K+FS+ +L H R H +KPYKC C K F D+ L
Sbjct: 14 ALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDL------ 65
Query: 74 HKDSKHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
++H +TH C CGKS++Q L H + H
Sbjct: 66 ---TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 82.5 bits (205), Expect = 6e-20
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 17/99 (17%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
+RTHTG+KPY C C K+FSQL++L++H R H +KPYKC C K F E L
Sbjct: 97 QRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL----- 149
Query: 73 KHKDSKHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
H +TH C CGKS+++ L+ H + H
Sbjct: 150 ----HTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 80.6 bits (200), Expect = 3e-19
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
+RTHTG+KPYKC C K+FSQ +NL++H R H +KPY C C K F L H
Sbjct: 69 QRTHTGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 73 KHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
H K + C CGKS+++E L H + H
Sbjct: 127 THTGE---KPYKCPECGKSFSREDNLHTHQRTH 156
Score = 54.0 bits (131), Expect = 3e-09
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 32 AFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTH------IC 85
+ S+ + + +KPY C C K F L ++H +TH C
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHL---------AEHQRTHTGEKPYKC 52
Query: 86 QYCGKSYTQETYLSKHMQKH 105
CGKS++ + L++H + H
Sbjct: 53 PECGKSFSDKKDLTRHQRTH 72
Score = 50.5 bits (122), Expect = 4e-08
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
+RTHTG+KPYKC C K+FS+ L H R H K
Sbjct: 153 QRTHTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKKT 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 80.6 bits (200), Expect = 7e-20
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHK 75
+G +C C K F L+ H+R H +KP++C C KC+ + LLEH + +
Sbjct: 2 SSGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH--EAR 57
Query: 76 DSKHL--KTHICQYCGKSYTQETYLSKHMQKH 105
+ + + C C +++ + L HM H
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 80.6 bits (200), Expect = 7e-20
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQT---DKPYKCNSCYKCFVDETALLEH 70
R HTG+KP++C C K + + NL H + ++ + C+ C + F L H
Sbjct: 28 RKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Query: 71 IPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQK 104
+ H K C C + + Q+ L HM K
Sbjct: 86 MVSHTGEMPYK---CSSCSQQFMQKKDLQSHMIK 116
Score = 67.1 bits (165), Expect = 1e-14
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 10 MEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLE 69
+ ++ + C C + F + L+ H H + PYKC+SC + F+ + L
Sbjct: 55 EARNCMNRSEQVFTCSV--CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Query: 70 H 70
H
Sbjct: 113 H 113
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 82.3 bits (204), Expect = 9e-20
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHI 71
HTG+KP+ C+ GC K F+ L +L HS H +K + C+ C F + + +H
Sbjct: 35 CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Query: 72 PKHKDSKHLKTHICQY--CGKSYTQETYLSKHMQKH 105
+ + K ++C + CGK++ + L H H
Sbjct: 95 NRFHNIKI-CVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 78.8 bits (195), Expect = 2e-18
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHI 71
K Y C C A+++ LQ+H H +KP+ C C K F L
Sbjct: 5 ALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL---- 60
Query: 72 PKHKDSKHLKTH------IC--QYCGKSYTQETYLSKHMQKH 105
++H TH C C +T + + KH +
Sbjct: 61 -----TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 75.7 bits (187), Expect = 2e-17
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 13 RRTHTGDK--PYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALL 68
K Y C C KAF + + L+ H H PY+C C K F + L
Sbjct: 94 FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 153
Query: 69 EHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQK-HAE 107
H H K C + GK++T KH+ + H +
Sbjct: 154 RHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECHQD 190
Score = 36.8 bits (86), Expect = 0.002
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 42 HSRCHQTDKPYKCNS--CYKCFVDETALLEHIPKHKDSKHLKTHICQY--CGKSYTQETY 97
K Y C+ C + L H+ KH K C+ C K +T +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP---CKEEGCEKGFTSLHH 59
Query: 98 LSKHMQKH 105
L++H H
Sbjct: 60 LTRHSLTH 67
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 76.4 bits (189), Expect = 1e-18
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
+PY C C + FSQ +L H R H KP++C C + F L HI H K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 80 LKTHICQYCGKSYTQETYLSKHMQKH 105
C CG+ + + +H + H
Sbjct: 63 FA---CDICGRKFARSDERKRHTKIH 85
Score = 70.6 bits (174), Expect = 2e-16
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
R HTG KP++CR C++ FS+ +L +H R H +KP+ C+ C + F H
Sbjct: 27 RIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 75.3 bits (186), Expect = 3e-18
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 8 LTMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCF 61
L + H K + C P C K+F+ +L+ H + H + Y C
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 71.8 bits (177), Expect = 5e-17
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQT-DKPYKCN--SCYKCFVDETALLEHIP 72
+G C PGC + FS L H + K + C +C K F + L EH+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 73 KHKDSKHLKTHICQYCGKSY 92
H D++ +IC++ G S
Sbjct: 62 LHSDTRD---YICEFSGPSS 78
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 75.9 bits (188), Expect = 3e-18
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
+GDK Y C+ C K+F+ S H H +PY C C K F + L+ H+
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 74 HKDSKHLKTHICQYCGKSYTQETYLSKHM 102
H K + C C K + +H+
Sbjct: 60 HTGIKPYE---CNICAKRFMWRDSFHRHV 85
Score = 75.9 bits (188), Expect = 3e-18
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
H G +PY C C K F +L H + H KPY+CN C K F+ + H+
Sbjct: 29 MSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV- 85
Query: 73 KHKDSKHL--KTHICQYCGKSYTQETYLS 99
K++ ++ T+ + S
Sbjct: 86 ------TSCTKSYEAAKAEQNTTEASGPS 108
Score = 42.0 bits (100), Expect = 1e-05
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQS 41
R + K Y+ + ++ S S
Sbjct: 83 RHVTSCTKSYEAAK--AEQNTTEASGPSS 109
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 74.8 bits (185), Expect = 5e-18
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
RTHTG+KP+ C C + F++ + H P + + L +
Sbjct: 23 IRTHTGEKPFACDI--CGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEV- 78
Query: 73 KHKDSKHLKTH 83
LK
Sbjct: 79 -----ARLKKL 84
Score = 71.0 bits (175), Expect = 1e-16
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
KP++CR C++ FS+ +L +H R H +KP+ C+ C + F H H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ----H 55
Query: 80 LKTHICQYCGKSYTQETYLSKHMQ 103
+ + + ++ +L +
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVA 79
Score = 27.1 bits (61), Expect = 1.6
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 80 LKTHICQYCGKSYTQETYLSKHMQKH 105
+K C+ C +++++ +L+ H++ H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTH 26
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 73.3 bits (181), Expect = 1e-17
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
+ + P KC C + S + L+ H R H TD+P+KCN C + L +H+ K
Sbjct: 2 SSGSSGHPEKCSE--CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 74 H 74
Sbjct: 60 F 60
Score = 52.5 bits (127), Expect = 8e-10
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
R H D+P+KC + C Q SNL H + D
Sbjct: 30 RIHCTDRPFKCNY--CSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 29.0 bits (66), Expect = 0.21
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
C C S + + L H + H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIH 32
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 74.2 bits (183), Expect = 1e-17
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
RTHTG+KPYKC GC F++ L H R H KP++C C + F L
Sbjct: 37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL----- 91
Query: 73 KHKDSKHLKTH 83
+ H+K H
Sbjct: 92 ----ALHMKRH 98
Score = 70.0 bits (172), Expect = 5e-16
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKHKDS 77
+ + C +PGC K +++ S+L++H R H +KPYKC C F L H KH
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG- 72
Query: 78 KHLKTHICQYCGKSYTQETYLSKHMQKH 105
K C C +S+++ +L+ HM++H
Sbjct: 73 --AKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 47.2 bits (113), Expect = 1e-07
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQ 47
R HTG KP++C C ++FS+ +L H + HQ
Sbjct: 67 YRKHTGAKPFQC--GVCNRSFSRSDHLALHMKRHQ 99
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 72.3 bits (178), Expect = 4e-17
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
+HT PY+C H GC K FS S L+ H + H K +SC T L+H
Sbjct: 24 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH--- 80
Query: 74 HKDSKHLKTH 83
+ H
Sbjct: 81 -----VAECH 85
Score = 65.7 bits (161), Expect = 1e-14
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 22 YKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKHKDSKH 79
Y C C KAF + + L+ H H PY+C C K F + L H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 80 LKTHICQYCGKSYTQETYLSKHMQK 104
K C + GK++T KH+ +
Sbjct: 62 KKDDSCSFVGKTWTL---YLKHVAE 83
Score = 34.5 bits (80), Expect = 0.004
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSH-SRCH 46
+ H G K C + H + CH
Sbjct: 53 EKVHAGYPCKKD--DSCSFVGKTWTLYLKHVAECH 85
Score = 25.3 bits (56), Expect = 5.8
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 83 HICQY--CGKSYTQETYLSKHMQKH 105
++C + CGK++ + L H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH 26
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 71.8 bits (177), Expect = 7e-17
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
RTHTG+KPY C GC F++ L H R H +P++C C + F L
Sbjct: 28 RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL------ 81
Query: 74 HKDSKHLKTH 83
+ H+K H
Sbjct: 82 ---ALHMKRH 88
Score = 69.5 bits (171), Expect = 5e-16
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPK 73
T GC K +++ S+L++H R H +KPY C+ C F L H K
Sbjct: 2 RTATHTCDY--AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 74 HKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
H + CQ C +++++ +L+ HM++H
Sbjct: 60 HTG---HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 44.8 bits (107), Expect = 7e-07
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
R HTG +P++C+ C +AFS+ +L H + H
Sbjct: 57 YRKHTGHRPFQCQK--CDRAFSRSDHLALHMKRH 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 71.4 bits (176), Expect = 8e-17
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH----QTDKPYKCNSCYKCFVDETALLE 69
RTHTG+KPY C H C K F Q L H + + + C+ C K F +
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 70 HIPKHKDSKHLKTHICQYCGKSY 92
H ++ + G S
Sbjct: 66 HADNCAGPDGVE---GENSGPSS 85
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 38 NLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKD-SKHLKTHICQYCGKSYTQET 96
+ S R H +KPY C+ C K F + L H ++ D + +C CGK++T+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 97 YLSKHMQKH 105
+++H
Sbjct: 62 TMARHADNC 70
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 70.6 bits (174), Expect = 1e-16
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
DKPYKC C +F NL SH H +KPY+CN C F L H
Sbjct: 10 HMTHSDKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 54.0 bits (131), Expect = 2e-10
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
+ HTG+KPY+C C F++ +NL++H+R H +KPY
Sbjct: 37 KTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKPY 74
Score = 51.7 bits (125), Expect = 2e-09
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 37 SNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQET 96
+ HS +DKPYKC+ C F + L H H K + C CG + +
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYR---CNICGAQFNRPA 59
Query: 97 YLSKHMQKH 105
L H + H
Sbjct: 60 NLKTHTRIH 68
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 72.2 bits (178), Expect = 1e-16
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
+ C H GC K F S ++ H H + + C C K FV+ + L H H K
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 80 LKTHICQYCGKSYTQETYLSKHMQKH 105
+ CGK ++ + L H++ H
Sbjct: 63 FQCTFEG-CGKRFSLDFNLRTHVRIH 87
Score = 69.5 bits (171), Expect = 2e-15
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS--CYKCFVDETALLEHI 71
TH G + + C C KAF + S L+ H H +KP++C C K F + L
Sbjct: 28 HTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL---- 80
Query: 72 PKHKDSKHLKTH------ICQY--CGKSYTQETYLSKHMQKH 105
H++ H +C + C K + Q T L H+ H
Sbjct: 81 -----RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 62.9 bits (154), Expect = 3e-13
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYK 53
R HTGD+PY C GC K F+Q +NL+SH H K +
Sbjct: 85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 28.6 bits (65), Expect = 0.84
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKHAER 108
+T C + C K + + + KH+ H R
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPR 33
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 71.9 bits (177), Expect = 3e-16
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN 55
+RTHTG+KP+KC GC + F+ S+ + H H +DK +
Sbjct: 112 KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 70.8 bits (174), Expect = 8e-16
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 29/92 (31%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPK 73
R HTG+KP+ C PGC K F++ NL+ H R H +KP+KC
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF----------------- 125
Query: 74 HKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
+ C + + + KHM H
Sbjct: 126 ------------EGCDRRFANSSDRKKHMHVH 145
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 69.5 bits (171), Expect = 3e-16
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 12 IRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSR--CHQTDKPYKCNSCYKCFVDETALLE 69
+ T G+ Y+C+ C + ++ +SN H + K Y C C+K F + +
Sbjct: 1 MEFTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58
Query: 70 HIPKH 74
H+
Sbjct: 59 HVKII 63
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 69.0 bits (170), Expect = 6e-16
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
+ YKC C K+FS S+L H R H +KPYKC+ C K F+ + L+ H
Sbjct: 10 EWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 55.9 bits (136), Expect = 4e-11
Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYK 53
RRTHTG+KPYKC C KAF Q S+L H R H P
Sbjct: 38 RRTHTGEKPYKCDE--CGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 47.4 bits (114), Expect = 8e-08
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 35 QLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQ 94
+ + + YKC+ C K F + L +H H K K C CGK++ Q
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYK---CDECGKAFIQ 58
Query: 95 ETYLSKHMQKH 105
++L H + H
Sbjct: 59 RSHLIGHHRVH 69
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 68.7 bits (169), Expect = 7e-16
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
H+G+KPY C C KAFS+ S L H R H +KPYKC C K F + L+ H
Sbjct: 6 SGIHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 52.1 bits (126), Expect = 1e-09
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
+R HTG+KPYKC C KAFSQ S L +H R H +
Sbjct: 34 QRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSGPSS 71
Score = 44.8 bits (107), Expect = 6e-07
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 39 LQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYL 98
S H +KPY C C K F + L++H H K K C CGK+++Q + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYK---CLECGKAFSQNSGL 58
Query: 99 SKHMQKH 105
H + H
Sbjct: 59 INHQRIH 65
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 68.3 bits (168), Expect = 1e-15
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH--QTDKPYKCNSCYKCFVDETALLEH 70
RTH+G+KPY+C C F+Q ++ H + + C C ++ L H
Sbjct: 7 GRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Query: 71 I 71
+
Sbjct: 65 L 65
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 38 NLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETY 97
+ S R H +KPY+C C+ F + HI + ++++ C +C +++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH-TENVAKFHCPHCDTVIARKSD 60
Query: 98 LSKHMQKH 105
L H++K
Sbjct: 61 LGVHLRKQ 68
Score = 47.9 bits (115), Expect = 4e-08
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 13 RRTHTG--DKPYKCRHPGCVKAFSQLSNLQSHSRCHQT-DKPY 52
+ C H C ++ S+L H R + P
Sbjct: 35 ILQKHTENVAKFHCPH--CDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 25.6 bits (57), Expect = 4.0
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 8 LTMEIRRTHTGDKPY 22
L + +R+ H+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 68.2 bits (168), Expect = 1e-15
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
H+ +PY C++ C K F Q S+++ H+ H +KP+KC C K F + L+ H
Sbjct: 21 LLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Query: 73 KH 74
KH
Sbjct: 79 KH 80
Score = 61.7 bits (151), Expect = 3e-13
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 22 YKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLK 81
+ C+ C K+F + S L +H H +PY C C K F ++ + KH
Sbjct: 2 FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDM---------KKHTF 50
Query: 82 TH------ICQYCGKSYTQETYLSKHMQKH 105
H CQ CGK+++Q + L H +KH
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 63.5 bits (155), Expect = 4e-14
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP+ C PGC FS+ L H R H KP +S
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 30.0 bits (68), Expect = 0.065
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 41 SHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKH 74
S +KP+ C C F L H H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-13
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G+K YKC C K FSQ S+LQ+H R H +KP +S
Sbjct: 4 GSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +K YKC+ C K F + L H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 2e-13
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G+K +KCR C FSQ S+L+ H H +KP +S
Sbjct: 5 SSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 36.4 bits (85), Expect = 4e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +K +KC C CF ++L H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 28.3 bits (64), Expect = 0.25
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 13 RRTHTGDKPYKC 24
+ H G+KP
Sbjct: 32 QNVHVGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 61.4 bits (150), Expect = 2e-13
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 12 IRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRC-HQTDKPYKCNSCYKCF 61
+ + KPY C+ C K FS+ +L H + H +++P+KC
Sbjct: 3 SGSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 38.7 bits (91), Expect = 5e-05
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 8 LTMEIRRTHTGDKPYKCRHPGCVKAFSQ 35
L I++ HT ++P+KC+ V S
Sbjct: 28 LNGHIKQVHTSERPHKCQV--WVSGPSS 53
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/65 (23%), Positives = 16/65 (24%), Gaps = 24/65 (36%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHI-----------CQYCG 89
S KPY C SC K F HL HI CQ
Sbjct: 2 SSGSSGSVGKPYICQSCGKGF-------------SRPDHLNGHIKQVHTSERPHKCQVWV 48
Query: 90 KSYTQ 94
+
Sbjct: 49 SGPSS 53
Score = 28.7 bits (65), Expect = 0.21
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQK 104
K +ICQ CGK +++ +L+ H+++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQ 34
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 61.9 bits (151), Expect = 3e-13
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
+PY C C + FS+ L H R H KP++C C + F + +H+
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF----SRSDHL- 65
Query: 73 KHKDSKHLKTH 83
+ H++TH
Sbjct: 66 ----TTHIRTH 72
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-13
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K ++ NL H + H ++P +S
Sbjct: 4 GSSGTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC C K + + L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 61.6 bits (150), Expect = 3e-13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEH 70
+ + + + C HPGC K + + S+L++H+R H +KP+ C+ C + F L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 71 IPKH 74
H
Sbjct: 69 RRTH 72
Score = 33.1 bits (76), Expect = 0.008
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 37 SNLQSHSRCHQTDKPYKCN--SCYKCFVDETALLEHIPKHKDSKHLKTHICQY--CGKSY 92
S + + C+ C K + + L H H K C + C + +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE---KPFSCSWKGCERRF 59
Query: 93 TQETYLSKHMQKH 105
+ LS+H + H
Sbjct: 60 ARSDELSRHRRTH 72
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-13
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C KAF++ S L H + H ++ +S
Sbjct: 5 SSGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC+ C K F ++ L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K+F S+L H R H +KP +S
Sbjct: 4 GSSGTGEKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC+ C+K F ++L H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C KAF S+L H H +KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F ++L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-13
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C KAF SNL +H H +KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 4e-13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F +L +H H +KP +S
Sbjct: 4 GSSGTGEKPYKCEE--CGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC C K F+ L H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 5e-13
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP+KC C K+F S L HS H +KP +S
Sbjct: 4 GSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+KC+ C K F + L H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-13
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN 55
+ +G+KPY C C K FSQ S L +H R H +KP +
Sbjct: 4 GSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY CN C K F ++ L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-13
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ + +KPYKC C K +++ NL H R H +K +S
Sbjct: 4 GSSGSVEKPYKCED--CGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC C K + L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY C C KAF+ SNL H + H KP +S
Sbjct: 4 GSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY C C K F + L++H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 25.9 bits (58), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K +IC CGK++T + L KH + H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-13
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+K Y C+ C K+FS+ L H R H +KP +S
Sbjct: 4 GSSGTGEKLYNCKE--CGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +K Y C C K F LL+H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG KPY C C KAFS S+L +H H +KP +S
Sbjct: 4 GSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPY CN C K F ++L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-13
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY C C KAF S LQ H R H +KP +S
Sbjct: 4 GSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY C C K F+ ++ L EH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-13
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C KAFSQ S L H R H +KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 7e-13
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KP+KC C K F+Q S L SH R H +KP +S
Sbjct: 4 GSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+KC C K F + L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-13
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C KAF+Q +NL H R H +KP +S
Sbjct: 4 GSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C C K F + L +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG++PY C C KAF+ SNL H + H +KP +S
Sbjct: 4 GSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++PY C C K F D + L++H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 26.3 bits (59), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
+ +IC CGK++T + L KH + H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 59.9 bits (146), Expect = 7e-13
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN 55
+ TG KP++C H C K+F NL +H R H +K +
Sbjct: 5 SSGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KP++C C K F + L+ H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 8e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN 55
+ TG +PY+C C KAF S+L H R H +KP +
Sbjct: 4 GSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +PY+C C K F +++L+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 25.6 bits (57), Expect = 2.6
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 78 KHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ C CGK++ ++ L H + H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 9e-13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G K +KC C K F+Q S+L H R H +KP +S
Sbjct: 4 GSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 6e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S K +KCN C K F ++L H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 9e-13
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K+F+ S L+ H +CH ++ +S
Sbjct: 5 SSGTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 36.0 bits (84), Expect = 5e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC+ C K F ++ L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 59.5 bits (145), Expect = 9e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN 55
+ TG+KPY C+ C K+F S L H R H +KP +
Sbjct: 4 GSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY C C K F + LL+H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G PYKC C K+FS L H R H +KP +S
Sbjct: 4 GSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 36.4 bits (85), Expect = 4e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S PYKC+ C K F + LL H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KP+KC+ C KAF Q +L SH R H +KP +S
Sbjct: 5 SSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 33.2 bits (77), Expect = 0.004
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+KC C K F L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG KPY+C C KAFSQ S L H R H +KP +S
Sbjct: 4 GSSGTGGKPYQCNE--CGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPY+CN C K F + L H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY C C K+F Q S+L H R H +KP +S
Sbjct: 4 GSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY CN C K F+ ++ L H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C KAFS ++L H R H +KP +S
Sbjct: 4 GSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C+ C K F +L +H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 61.3 bits (148), Expect = 1e-12
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSH--SRCHQTDKPYKCNSCYKCFVDETALLEH 70
TG ++C+ C A+ L L H H D ++ ++ +
Sbjct: 11 GSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 71 IPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHA 106
+ K C YCG S+ LS HM K
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 28.2 bits (62), Expect = 0.92
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKHAERSDK 111
C+ C +Y L+ HM + D
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDD 48
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F+Q S+L H H +KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KPYKC C K F+Q S+L +H R H +KP +S
Sbjct: 4 GSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP++C C KAF+ SNL H R H +KP +S
Sbjct: 5 SSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP++C+ C K F ++ L+ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-12
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F+Q S+L +H R H KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 1e-12
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C KAF+ SNL +H + H +KP +S
Sbjct: 4 GSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C C K F D + L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-12
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG KPYKC C K F+Q S+L H H +KP +S
Sbjct: 4 GSSGTGKKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-12
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KP++C C K F+Q S+L SH R H +KP +S
Sbjct: 4 GSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP++C C K F + L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-12
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C KAFS +L H R H KP +S
Sbjct: 4 GSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C+ C K F +L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KPYKC C K + + +L H R H +K +S
Sbjct: 5 SSGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC C K + L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCN 55
+ TG+KPY+C+ C KAF+Q ++L H + H +KP +
Sbjct: 4 GSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.006
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C C K F + L +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 27.1 bits (61), Expect = 0.79
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 78 KHLKTHI------CQYCGKSYTQETYLSKHMQKH 105
+ C+ C K++TQ+ +L++H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG KPY C C K FS S L H R H KP +S
Sbjct: 5 SSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPY C+ C K F ++ L+ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 25.2 bits (56), Expect = 3.3
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 78 KHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ C C K+++ ++ L H + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KP+KC C K F S SH R H +KP +S
Sbjct: 5 SSGSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 35.2 bits (82), Expect = 8e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+KC C K F + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 2e-12
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+ P+ C C K F+ +NL H + H ++P +S
Sbjct: 4 GSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + P+ C+ C K F +T L+ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KPY C + C KAF + L H R H +KP +S
Sbjct: 5 SSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY C+ C K F L+ H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 25.9 bits (58), Expect = 2.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 78 KHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ +C YCGK++ L +H + H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F S L H R H +KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 2e-12
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F+Q S+L H H +KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC+ C KAF S+L H H ++P +S
Sbjct: 4 GSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC C K F + L++H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C KAFS S+L +H H KP +S
Sbjct: 5 SSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+CN C K F ++L H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP KC C KAF S L H R H DK +S
Sbjct: 4 GSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP KC C K F ++ L+ H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 26.4 bits (59), Expect = 1.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C CGK++ ++ L H + H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C KAF S+ H R H +P +S
Sbjct: 4 GSSGTGEKPYKCME--CGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 36.0 bits (84), Expect = 4e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC C K F D ++ +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP+KC C K+++Q +L H R H +KP +S
Sbjct: 4 GSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+KC C K + L +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C K+F++ S L H + H +KP +S
Sbjct: 5 SSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.005
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C+ C K F ++ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 26.0 bits (58), Expect = 2.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 78 KHLKTHI------CQYCGKSYTQETYLSKHMQKH 105
+ C CGKS+T+++ L H Q H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 58.7 bits (143), Expect = 2e-12
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+K YKC C K FS+ S L H + H +KP +S
Sbjct: 4 GSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +K YKCN C K F + L +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F+Q S+L H R H KP +S
Sbjct: 4 GSSGTGEKPYKCNE--CGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKCN C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.3 bits (142), Expect = 3e-12
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+ TG+KPY+C C KAF+ SNL H R H +
Sbjct: 5 SSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.004
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+CN C K F ++ L+ H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPYKC C K F + S+L H H +KP +S
Sbjct: 4 GSSGTGEKPYKCHE--CGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 33.2 bits (77), Expect = 0.004
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC+ C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C+ C KAFSQ ++L H R H +KP +S
Sbjct: 4 GSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C C K F T L++H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+KPYKC C KAF + ++L H R H +P +S
Sbjct: 4 GSSGSGEKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 33.2 bits (77), Expect = 0.004
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPYKC+ C K F T L EH
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G++P+KC C K F + S+L H R H +K +S
Sbjct: 4 GSSGSGERPFKCNE--CGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++P+KCN C K F + L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+ PY+C C KAFS+ L SH R H +KP +S
Sbjct: 5 SSGTGENPYECHE--CGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.008
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + PY+C+ C K F + L+ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG++ Y+C C KAF Q S L H R H+ +KP +S
Sbjct: 4 GSSGTGERHYECSE--CGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++ Y+C+ C K F+ ++ L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 3e-12
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG++P+KC C K+F Q ++L H R H +KP +S
Sbjct: 4 GSSGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++P+KCN C K F+ L++H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 4e-12
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G KPY+C+ C K F Q+ +L H R H ++ +S
Sbjct: 4 GSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 32.5 bits (75), Expect = 0.007
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPY+C C K F+ L +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 26.7 bits (60), Expect = 0.79
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K + C+ C K++ Q +L++H + H
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 4e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP+ C C KAFS L H R H +KP +S
Sbjct: 4 GSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+ C C K F D L +H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 57.9 bits (141), Expect = 4e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP+KC C K FS+ S L H + H +KP +S
Sbjct: 4 GSSGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+KC C K F +AL H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 59.0 bits (143), Expect = 4e-12
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH---QTDKPYKCNSCYKCFVDETALLEHIP 72
+G +C C Q ++L H R H + C C K F ++ H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 73 KHKDSKHLKTHICQYCGKS 91
K + L + G S
Sbjct: 60 KSHPALLLAP--QESSGPS 76
Score = 42.8 bits (101), Expect = 3e-06
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 5/48 (10%)
Query: 13 RRTHT---GDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSC 57
+R H + C C K F + ++ +H
Sbjct: 27 QRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 5e-12
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG++ Y+C C KAF++ S L H R H +KP +S
Sbjct: 4 GSSGTGERHYECSE--CGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++ Y+C+ C K F ++ L+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 25.5 bits (57), Expect = 2.1
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 78 KHLKTHI------CQYCGKSYTQETYLSKHMQKH 105
+ C CGK++ +++ L H + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 6e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP++CR C K+FS S L H R H + P +S
Sbjct: 4 GSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP++C C K F + L+ H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 6e-12
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G+KPY C C KAFS S L H R H +KP +S
Sbjct: 4 GSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY C+ C K F ++ L+ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 57.5 bits (140), Expect = 7e-12
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
+ + C C +AF++ +L+ H R H +KPY C C + F L+ H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 44.0 bits (105), Expect = 7e-07
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSR 44
R+HT +KPY C C +AF++ L H++
Sbjct: 22 YRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQ 51
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 7e-12
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG K ++C C KAF++ S L H + H +KP +S
Sbjct: 4 GSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.004
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S K ++C C K F ++ L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 9e-12
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G+KPY+C C K+FS L H H +KP +S
Sbjct: 4 GSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + +KPY+C+ C K F L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 56.7 bits (138), Expect = 1e-11
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP++C C K+FS S L +H R H +KP +S
Sbjct: 5 SSGTGEKPFECAE--CGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 33.2 bits (77), Expect = 0.004
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP++C C K F + L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 25.5 bits (57), Expect = 2.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 78 KHLKTHI------CQYCGKSYTQETYLSKHMQKH 105
+ C CGKS++ + L+ H + H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 1e-11
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KP++C+ C FS +L H R H+ P +S
Sbjct: 5 SSGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 31.4 bits (72), Expect = 0.019
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
S +KP++C C F +L +H+ H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 27.9 bits (63), Expect = 0.36
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 79 HLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ C+ CG +++ L KH++ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 1e-11
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ G++ ++C C K F Q SN H R H +KP +S
Sbjct: 4 GSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++ ++C+ C K F+ + ++H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 27.1 bits (61), Expect = 0.69
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 78 KHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ C CGK + Q + +H + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.7 bits (138), Expect = 1e-11
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+ TG KPY C C KAF S L H+R H +
Sbjct: 5 SSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.004
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPY CN C K F ++ L+ H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 1e-11
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY+C C K+F + S L H R H + P +S
Sbjct: 5 SSGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+C+ C K F+ ++ L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 1e-11
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ TG+KPY C C KAF ++L H R H + +S
Sbjct: 4 GSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 32.5 bits (75), Expect = 0.008
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY CN C K FV L +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 26.7 bits (60), Expect = 0.84
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 78 KHLKTHI------CQYCGKSYTQETYLSKHMQKH 105
+ C CGK++ +L++H++ H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 56.0 bits (136), Expect = 2e-11
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+G+ PY+C C KAF++ L SH R H +
Sbjct: 2 SSGSSGENPYECSE--CGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.0 bits (66), Expect = 0.12
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 43 SRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + PY+C+ C K F + L+ H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH 29
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 55.2 bits (134), Expect = 4e-11
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+G+KP+ C C KAFS S L H + H +KP +S
Sbjct: 3 SGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 31.4 bits (72), Expect = 0.023
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 43 SRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KP+ C+ C K F ++ LL H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 27.5 bits (62), Expect = 0.53
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C C K+++ ++YL H Q H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTH 33
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.2 bits (134), Expect = 4e-11
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
+ G+KPYKC C F Q+++L++H H P
Sbjct: 3 SGSSGGEKPYKCET--CGARFVQVAHLRAHVLIHTGSGPS 40
Score = 32.5 bits (75), Expect = 0.007
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 42 HSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
S +KPYKC +C FV L H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 55.2 bits (134), Expect = 5e-11
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+ +G+KPY+C C KAF S L H R H
Sbjct: 5 SSGSGEKPYECNE--CGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY+CN C K F+ ++ L+ H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 54.9 bits (133), Expect = 5e-11
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRC-HQTDKPYKCNS 56
+ TG KPY+C C KAF Q ++L H R H +KP +S
Sbjct: 4 GSSGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 36.0 bits (84), Expect = 5e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S KPY+C C K F+ T+L+ H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 54.4 bits (132), Expect = 7e-11
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
+ G+KPY C C F L L+SH R H P
Sbjct: 4 GSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.3 bits (72), Expect = 0.022
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
S +KPY C C F L H+ H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 29.0 bits (66), Expect = 0.14
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 79 HLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ C+ CG + L H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 1e-10
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G++PY C C K F + S+L H + H +K +S
Sbjct: 5 SSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 32.5 bits (75), Expect = 0.008
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S ++PY CN C K F + L+EH
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 53.0 bits (128), Expect = 3e-10
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
+ G+KPY+C C KAFSQ +L H R H P
Sbjct: 3 SGSSGGEKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.9 bits (81), Expect = 0.001
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 42 HSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
S +KPY+C+ C K F + +L+ HI H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 4e-10
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+ TG+ PY+C C K FS+ L SH + H
Sbjct: 4 GSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.1 bits (74), Expect = 0.009
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + PY+C C K F + L+ H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 25.5 bits (57), Expect = 2.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
+ C CGK ++++ L H + H
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.2 bits (126), Expect = 5e-10
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ + K ++C C + F+ S+L H R H +KP +S
Sbjct: 4 GSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + K ++C+ C + F ++ L +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 27.9 bits (63), Expect = 0.32
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K+H C CG+ +T +++L++H + H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.9 bits (120), Expect = 4e-09
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNS 56
+ +G+K + C C K F +S L+ H R H +K +S
Sbjct: 4 GSSGSGEKSHTCDE--CGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 33.7 bits (78), Expect = 0.003
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +K + C+ C K F +AL H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 26.4 bits (59), Expect = 1.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K+H C CGK++ + L H + H
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.1 bits (118), Expect = 8e-09
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
+G + Y+C+ C K+F Q +L H R H P
Sbjct: 3 SGSSGQRVYECQE--CGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.1 bits (66), Expect = 0.11
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 43 SRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + Y+C C K F + +L H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 25.2 bits (56), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 85 CQYCGKSYTQETYLSKHMQKH 105
CQ CGKS+ Q+ L+ H + H
Sbjct: 13 CQECGKSFRQKGSLTLHERIH 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 47.7 bits (113), Expect = 5e-08
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 37 SNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQET 96
+ + H D+ KC+ C F+ + L KT +C+ C K QE
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR----------KTPMCEKCRKDSCQEA 53
Query: 97 YLSKHMQKHAERSDKRP 113
L+K + + P
Sbjct: 54 ALNKDEGNESGKKTSGP 70
Score = 47.3 bits (112), Expect = 8e-08
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP 72
++ H GD+ KC C F + S L K C C K E AL +
Sbjct: 10 QKIHLGDRSQKCSK--CGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEG 60
Query: 73 KHKDSK 78
K
Sbjct: 61 NESGKK 66
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 46.5 bits (111), Expect = 6e-08
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYK 53
+ G+ PY C C K+F+Q +L H R P
Sbjct: 3 SGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 30.3 bits (69), Expect = 0.045
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
++C CGKS+TQ L+ H +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 30.3 bits (69), Expect = 0.050
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 42 HSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S + PY C C K F +L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.9 bits (107), Expect = 2e-07
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+ T K Y C C KAF+++ +L H + H
Sbjct: 5 SSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 32.2 bits (74), Expect = 0.009
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEH 70
S K Y CN C K F L H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 78 KHLKTH------ICQYCGKSYTQETYLSKHMQKH 105
+ C CGK++T+ +L++H + H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.6 bits (106), Expect = 4e-07
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+G+KPY C C + FS + L H + H
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 31.1 bits (71), Expect = 0.023
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 43 SRCHQTDKPYKCNSCYKCFVDETALLEH 70
S +KPY C C + F D L++H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 24.6 bits (54), Expect = 5.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K + C C ++++ L +H + H
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMH 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.6 bits (102), Expect = 1e-06
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 22 YKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
Y C C + S L+ H R H +PY C C F + L +H+ SK
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.5 bits (89), Expect = 7e-05
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
RTHT +PY C + C +F NL H + K
Sbjct: 22 RTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.8 bits (82), Expect = 8e-04
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 52 YKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKHA 106
Y C C + L +HI H D + C YC S+ + L+KHM+ A
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYH---CTYCNFSFKTKGNLTKHMKSKA 53
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 43.8 bits (102), Expect = 4e-06
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 14 RTHTGDKPYKC--RHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHI 71
T + + + S+ + + C C F +L +HI
Sbjct: 35 LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94
Query: 72 PKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
+ +K +C C K +T H+ K
Sbjct: 95 RYTEHTK-----VCPVCKKEFTSTDSALDHVCKK 123
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 42.3 bits (99), Expect = 8e-06
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 6 QELTMEIRRTHTG---DKPYKCRHPGCV---KAFSQLSNLQSHSRCHQTDKPYKC 54
EL + H G + C C K+F L +H R H +K
Sbjct: 39 HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 40.0 bits (93), Expect = 5e-05
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 46 HQTDKPYKCNSCYKCFVDETALLEHIPK-HKDSKHLKTHICQY-----CGKSYTQETYLS 99
+ SC + F L+ H+ H H+C + GKS+ + L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 100 KHMQKH 105
H++ H
Sbjct: 80 NHIRVH 85
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 39.2 bits (92), Expect = 3e-05
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
R TG KP++C C ++FS+ +L H + H
Sbjct: 4 RGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 30.8 bits (70), Expect = 0.030
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 42 HSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHI 84
+R KP++C C + F L + H K H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHL---------ALHRKRHM 35
Score = 26.9 bits (60), Expect = 0.68
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C C +S+++ +L+ H ++H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 39.5 bits (92), Expect = 3e-05
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSC 57
+ K C C K F + +L H H +KPY
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.9 bits (67), Expect = 0.076
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 72 PKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
+ K C+ CGK + +L++H H
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 28.4 bits (63), Expect = 0.31
Identities = 11/35 (31%), Positives = 12/35 (34%)
Query: 44 RCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
+T K C C K F D L H H K
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 24.5 bits (53), Expect = 6.3
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 13 RRTHTGDKPYKC 24
+ +H+G+KPY
Sbjct: 32 KLSHSGEKPYSS 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 39.1 bits (91), Expect = 4e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKP 51
+ G+ P+KC C + F+Q + L H R H
Sbjct: 6 SGAGENPFKCSK--CDRVFTQRNYLVQHERTHARKSG 40
Score = 33.7 bits (77), Expect = 0.003
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
S + P+KC+ C + F L++H H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 27.1 bits (60), Expect = 0.66
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 85 CQYCGKSYTQETYLSKHMQKHA 106
C C + +TQ YL +H + HA
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHA 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 38.9 bits (91), Expect = 4e-05
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
K + C GC K + + S+L++H R H ++
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.8 bits (70), Expect = 0.029
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 76 DSKHLKTHICQY--CGKSYTQETYLSKHMQKH 105
D K HIC CGK Y + ++L H++ H
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 38.3 bits (89), Expect = 7e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
DK ++C PGC K F + N++SH + H D+
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 7e-05
Identities = 34/203 (16%), Positives = 53/203 (26%), Gaps = 88/203 (43%)
Query: 45 CHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHIC---QYCGKSYTQE------ 95
+P+ S +AL + + + Q Y +E
Sbjct: 130 RIMAKRPFDKKS-------NSALFRAV----GEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 96 TY----------LSKHMQKHAERSDKRPPII--GIP-RAALENPHYWPKVSPDTANNLSM 142
TY ++ + + + + G+ LENP +PD
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS----NTPD------- 227
Query: 143 GLPHHQHHLNHHQAYLPYNTISFPGKVMQQSSGPNTPVSVAVSNSFPNQLISLHQIRNY- 201
+ YL IS P LI + Q+ +Y
Sbjct: 228 ------------KDYLLSIPISCP-------------------------LIGVIQLAHYV 250
Query: 202 --AHQPGSTLMPGE--HILAGLT 220
A G T PGE L G T
Sbjct: 251 VTAKLLGFT--PGELRSYLKGAT 271
Score = 37.3 bits (86), Expect = 0.003
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 49/118 (41%)
Query: 116 IGI------PRAALENPHYWPKVSPDTANN--------LSM-GLPHHQ--HHLNHHQAYL 158
IG+ P +L P + D+ N LS+ L Q ++N ++L
Sbjct: 306 IGVRCYEAYPNTSL-----PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 159 PYNTISFPGKVMQQSSGPNTPVSVAVSNSFPNQLI------SLH----QIRNYAHQPG 206
P V +++ N L+ SL+ +R G
Sbjct: 361 P----------------AGKQVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Score = 29.6 bits (66), Expect = 0.99
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 33/96 (34%)
Query: 140 LSMGLPHHQHHL------------------NHHQAYLP-YNTISFPGKVMQQSSGPNTPV 180
L + P H H L N +P Y+T F G ++ SG +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FDGSDLRVLSGSISER 478
Query: 181 SVAVSNSFPNQLISLHQIRNYAHQPGSTLMPGEHIL 216
V + +I L +T HIL
Sbjct: 479 IV-------DCIIRLP-----VKWETTTQFKATHIL 502
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.4 bits (85), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
+P+ C C K F++ LQ H R H +K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 35.4 bits (81), Expect = 5e-04
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQ 47
D+PY C HPGC KAF + +L H + HQ
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 36.8 bits (84), Expect = 8e-04
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 18 GDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDS 77
+ Y+CR C S L SH R + C C F EH K +
Sbjct: 13 NKEVYQCRL--CNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 78 KHLKTHICQYCGKSYTQETYLSKH 101
K C C +++ + +H
Sbjct: 69 KLT----CLECMRTFKSSFSIWRH 88
Score = 33.3 bits (75), Expect = 0.017
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSK 100
S + + + Y+C C H +++ +C YC + +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA-----VCPYCSLRFFSPELKQE 60
Query: 101 HMQKHAER 108
H K +
Sbjct: 61 HESKCEYK 68
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.6 bits (76), Expect = 0.011
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 37 SNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIP-KHKDSKHLKTHICQYCGKSYTQE 95
+ + + + + Y+C C D H+ +H + +++C C +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 96 TYLSKHMQKH 105
LS+H K+
Sbjct: 64 DALSEHNLKY 73
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 29.3 bits (65), Expect = 0.093
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
KPY C H C + F+ LQ H R H +K
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 1.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSK 78
KPY C C + F D AL H+ H K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.5 bits (73), Expect = 0.11
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
T + Y+C C +L +H H
Sbjct: 173 PTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
Score = 28.3 bits (62), Expect = 2.3
Identities = 9/49 (18%), Positives = 12/49 (24%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKHAERSDKRPPIIGIPRAALENPHYW 129
+ C C L H+ H + I R E W
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSW 227
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 29.9 bits (66), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 9 TMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRC-HQTDKPYKC 54
++E ++ +PY+C H GC AF+ NL H + H++D P
Sbjct: 15 SLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.20
Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 53/190 (27%)
Query: 70 HIPKHKDSKHLKTHICQY-------------CGKSY-TQETYLSKHMQKHAERSDKRPPI 115
++ + + L+ + + GK++ + LS +Q +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------- 182
Query: 116 IGIPRAALENPHYWPKV----SPDTA----NNLSMGLPHHQHHLNHHQAYLPYNTISFPG 167
I +W + SP+T L + + + H + + S
Sbjct: 183 -KI---------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 168 KV---MQQSSGPNT-----PV-SVAVSNSFPNQ---LI--SLHQIRNYAHQPGSTLMPGE 213
++ ++ N V + N+F L+ Q+ ++ +T + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 214 HILAGLTKDK 223
H LT D+
Sbjct: 293 HHSMTLTPDE 302
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 27.7 bits (62), Expect = 0.30
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
+ + C C +AF++ +L+ H R H +K
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.7 bits (61), Expect = 0.34
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQ 47
DKP+ C PGC + F+ +L H H+
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex
pyrophilus} SCOP: a.2.11.1 d.44.1.1
Length = 212
Score = 29.5 bits (67), Expect = 0.65
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 10/36 (27%)
Query: 122 ALENPHYWPKVSPDTANNLSMGLPHHQHHLNHHQAY 157
L+ P +S + + H H++ Y
Sbjct: 10 HLK-PQNLEGISNEQ-----IEP----HFEAHYKGY 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.7 bits (59), Expect = 0.73
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPK 73
K Y C C + F L+ H K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+G +P+ CR C+ AF+ +N H + H
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVH 30
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 1.5
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 39/117 (33%)
Query: 90 KSYTQETYLSKHMQKHAERSDKRPPIIGIPRAALENPHYWPKVSPDTANNLSMGLPHHQH 149
+Y+ E K ++ K PP+I I + LE +
Sbjct: 122 VNYSSEV---KENSVDSDDKAKVPPLIRIV-SGLELSDTKQ--------------KGKK- 162
Query: 150 HLNHHQAYL-----PYNTISFPGKVMQQSSGPNTPVSVAVSNSFPNQLISLHQIRNY 201
+L P+ I+ ++ P + + +N N + ++
Sbjct: 163 -------FLVIAYEPFENIAI--EL------PPNEILFSENNDMDNNNDGVDELNKK 204
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif,
alternative splicing, nuclear protein, phosphorylation,
repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2jx2_A
Length = 121
Score = 27.8 bits (62), Expect = 1.6
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 142 MGLPHHQHHLNHHQAYLPYNTISFPGKVMQQSSGPNTPVS 181
MG HH HH H +P + P + P
Sbjct: 1 MGSSHHHHH--HSSGLVPRGSHMGPFRRSDSFPERRAPRK 38
>2wh7_A HYLP2, hyaluronidase-phage associated; triple-stranded beta-helix,
hyaluronan lyase, phage tail fibre, hydrolase,
glycosidase; 1.60A {Streptococcus pyogenes} PDB: 2wb3_A
Length = 178
Score = 28.3 bits (62), Expect = 1.6
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 142 MGLPHHQHHLNHHQAYLPYNTISFPGKVMQQSSGPNTPVSVAVSNSFPN 190
MG HH HH H +P + + VM+Q + PN ++ ++++
Sbjct: 1 MGSSHHHHH--HSSGLVPRGSHNAVNIVMRQPTTPNFSSALNITSANEG 47
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.4 bits (55), Expect = 2.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K ++C+ CGK + Q + L+ H++ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.3 bits (52), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKH 74
KPY C C K FV + L HI H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 2.5
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 56 SCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKH-MQKHAER 108
SC C +E + KH ++ + C +CGK + H M H
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.1 bits (54), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 52 YKCNSCYKCFVDETALLEHIPKHKD 76
YKC C + FV+++AL H HK+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 25.3 bits (54), Expect = 3.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 43 SRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKH 79
S +KPY C C F + + H+ H S
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 38
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 3.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 85 CQYCGKSYTQETYLSKHMQKHAERSDKR 112
C C K + + +LSKH+ H ++R
Sbjct: 5 CPECPKRFMRSDHLSKHITLHELLGEER 32
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.1 bits (55), Expect = 3.3
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH-AERSDKR 112
+++ C +C + + L HM H +R+ R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 37
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 24.7 bits (53), Expect = 3.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C CGK++TQ + L H+++H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.2 bits (54), Expect = 4.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 41 SHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
S Q +K +KCN C K F L +H H
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.8 bits (53), Expect = 5.2
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 15 THTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+ +K +KC C K FS L H R H
Sbjct: 6 SGQKEKCFKCNK--CEKTFSCSKYLTQHERIH 35
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 4.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKHAE 107
KTH+C CGK + + L H H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.1 bits (59), Expect = 4.8
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 69 EHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQ--KHAERSDKRPPI 115
+ K C +C + + + H+ H + KR
Sbjct: 279 HSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNF 327
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 5.6
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 36 LSNLQSH-SRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
L L+ H C + KC C K F + L H +K
Sbjct: 38 LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 26.9 bits (58), Expect = 5.6
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 64 ETALLEHIPKHKDSKHLKTHICQ--YCGKSYTQETYLSKHMQ-KHAE 107
AL H+ K +D K+ + C C K + ++ KH++ KH E
Sbjct: 286 TEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTE 332
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 6.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSK 78
KPYKC C + L H+ KH K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (52), Expect = 7.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSKHLK 81
+K ++C C + F +L+EH H K+
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Geobacter metallireducens gs-15}
Length = 112
Score = 25.5 bits (56), Expect = 8.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 83 HICQYCGKSYTQE 95
IC YCG+ + E
Sbjct: 36 GICHYCGEIFPPE 48
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 24.4 bits (53), Expect = 8.1
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 73 KHKDSKHLKTHICQYCGKSYTQ 94
+DS + + C C ++T
Sbjct: 5 DERDSTNRASFKCPVCSSTFTD 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.417
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,371,447
Number of extensions: 188831
Number of successful extensions: 1631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1223
Number of HSP's successfully gapped: 527
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)