RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8183
(223 letters)
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 47.4 bits (113), Expect = 1e-08
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 22 YKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKC 54
+ C P C K+F+ +L+ H + H + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 28.1 bits (63), Expect = 0.078
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 13 RRTHTGDKPYKC 24
+ H+ + Y C
Sbjct: 23 MKLHSDTRDYIC 34
Score = 26.2 bits (58), Expect = 0.36
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 82 THICQY--CGKSYTQETYLSKHMQKH 105
+ C CGKS+ + +L +HM+ H
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLH 26
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.4 bits (108), Expect = 6e-08
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
RTH+G+KPY+C C F+Q ++ H T+
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN 35
Score = 31.1 bits (71), Expect = 0.008
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 44 RCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
R H +KPY+C C+ F + HI +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 30.7 bits (70), Expect = 0.010
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K + C C +TQ + H+ +
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQK 31
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 45.1 bits (106), Expect = 1e-07
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
DK Y C+ C K+F+ S H H +PY C C K F + L+ H+ H
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 40.4 bits (94), Expect = 5e-06
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 49 DKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
DK Y C C K F ++ H+ H + C CGK + + +L HM+ H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIH 53
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.9 bits (104), Expect = 2e-07
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDKPY 52
RTHTG+KPY C H C K F Q L H + + D +
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRY-HDPNF 36
Score = 32.0 bits (73), Expect = 0.004
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 44 RCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSK 78
R H +KPY C+ C K F + L H ++ D
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 30.0 bits (68), Expect = 0.019
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K + C +C K++ Q+ L H +++
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRY 31
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 43.4 bits (103), Expect = 3e-07
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 17 TGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQT-DKPYKCN 55
+ KPY C+ C K FS+ +L H + T ++P+KC
Sbjct: 1 SVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 31.9 bits (73), Expect = 0.004
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 8 LTMEIRRTHTGDKPYKC 24
L I++ HT ++P+KC
Sbjct: 21 LNGHIKQVHTSERPHKC 37
Score = 31.5 bits (72), Expect = 0.006
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K +ICQ CGK +++ +L+ H+++
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQV 28
Score = 28.8 bits (65), Expect = 0.051
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 48 TDKPYKCNSCYKCFVDETALLEHI 71
KPY C SC K F L HI
Sbjct: 2 VGKPYICQSCGKGFSRPDHLNGHI 25
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 43.1 bits (102), Expect = 4e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
D+PY C HPGC KAF + +L H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 26.9 bits (60), Expect = 0.24
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKHAERS 109
+ + C + C K++ + L +H + H E++
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 23.1 bits (50), Expect = 5.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 49 DKPYKCN--SCYKCFVDETALLEHIPKH 74
D+PY C+ C K FV L+ H H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 42.2 bits (100), Expect = 7e-07
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
H+G+KPY C C KAFS+ S L H R H
Sbjct: 2 HSGEKPYGCVE--CGKAFSRSSILVQHQRVH 30
Score = 30.7 bits (70), Expect = 0.010
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K + C CGK++++ + L +H + H
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVH 30
Score = 29.9 bits (68), Expect = 0.020
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 46 HQTDKPYKCNSCYKCFVDETALLEHIPKH 74
H +KPY C C K F + L++H H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVH 30
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 41.9 bits (99), Expect = 8e-07
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
KP+KC GC K++S+L NL++H R H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 26.9 bits (60), Expect = 0.19
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKH 105
K H C + C KSY++ L H++ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
Score = 23.8 bits (52), Expect = 2.4
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 50 KPYKCN--SCYKCFVDETALLEHIPKH 74
KP+KC C K + L H+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 41.9 bits (99), Expect = 9e-07
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+PY C C + FS+ ++L H R H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 25.7 bits (57), Expect = 0.49
Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKH 105
+ + C C + +++ L++H++ H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
Score = 23.4 bits (51), Expect = 3.9
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 50 KPYKCN--SCYKCFVDETALLEHIPKH 74
+PY C SC + F L HI H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 41.2 bits (97), Expect = 1e-06
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
KP++C GC K FS NL++H R H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 25.0 bits (55), Expect = 1.0
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKH 105
K C + CGK ++ + L H++ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
Score = 23.1 bits (50), Expect = 5.0
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 50 KPYKCN--SCYKCFVDETALLEHIPKH 74
KP++C C K F + L H+ H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 41.2 bits (97), Expect = 2e-06
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+PY C GC K F+Q +NL+SH H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 26.5 bits (59), Expect = 0.25
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKHA 106
+ ++C + C K + Q T L H+ HA
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 41.2 bits (97), Expect = 2e-06
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+P+ C C K F++ LQ H R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 26.5 bits (59), Expect = 0.27
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKH 105
+ +C + CGK +T+ L +H + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.0 bits (50), Expect = 4.7
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 50 KPYKCNS--CYKCFVDETALLEHIPKH 74
+P+ C C K F L H H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 40.9 bits (96), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 RTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
R TG KP++C C ++FS+ +L H + H
Sbjct: 4 RGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 33.2 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 42 HSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
+R KP++C C + F L H +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.0 bits (60), Expect = 0.19
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C C +S+++ +L+ H ++H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 38.4 bits (89), Expect = 3e-05
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 9 TMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
+++ DK ++C PGC K F + N++SH + H D+
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 23.0 bits (49), Expect = 8.5
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 67 LLEHIPKHKDSKHLKTHICQYCGKSYTQETYLSKHMQKH 105
++ K K + C K++ + + H+Q H
Sbjct: 6 SIDKYVKEMPDKTFECLFPG-CTKTFKRRYNIRSHIQTH 43
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 37.4 bits (87), Expect = 4e-05
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 13 RRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+ YKC G +FS S+L H R H
Sbjct: 4 EWQQRERRRYKCDECGK--SFSHSSDLSKHRRTH 35
Score = 29.4 bits (66), Expect = 0.036
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 42 HSRCHQTDKPYKCNSCYKCFVDETALLEHIPKH 74
+ + YKC+ C K F + L +H H
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 24.0 bits (52), Expect = 2.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
+ + C CGKS++ + LSKH + H
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTH 35
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 36.3 bits (84), Expect = 1e-04
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 16 HTGDKPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+G +P+ CR C+ AF+ +N H + H
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVH 30
Score = 28.2 bits (63), Expect = 0.092
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKHAE 107
+ +C+ C ++T + ++H++ H +
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 27.0 bits (60), Expect = 0.20
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 46 HQTDKPYKCNSCYKCFVDETALLEHIPKHKDS 77
+P+ C C F + H+ H D+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 34.9 bits (81), Expect = 3e-04
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
KP++CR C++ FS+ +L +H R H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTH 26
Score = 29.9 bits (68), Expect = 0.015
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C+ C +++++ +L+ H++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 28.0 bits (63), Expect = 0.077
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKH 74
KP++C C + F L HI H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 34.5 bits (80), Expect = 4e-04
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
+ + C C +AF++ +L+ H R H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSH 25
Score = 30.7 bits (70), Expect = 0.008
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
++ +C+ C +++ ++ +L +H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.0 bits (63), Expect = 0.097
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKH 74
+ + C C + F + L H H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 34.1 bits (79), Expect = 6e-04
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
KPYKC C KAFSQ S L +H R H
Sbjct: 1 KPYKCLE--CGKAFSQNSGLINHQRIH 25
Score = 27.9 bits (63), Expect = 0.088
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 50 KPYKCNSCYKCFVDETALLEH 70
KPYKC C K F + L+ H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
Score = 26.4 bits (59), Expect = 0.26
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K + C CGK+++Q + L H + H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 33.0 bits (75), Expect = 0.002
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHS-RCHQTD 49
KPY C H GC KAFS S+ H R H +
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 31
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 32.3 bits (74), Expect = 0.002
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCHQTDK 50
K + C C K F + +L H + HQ K
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQNKK 29
Score = 29.6 bits (67), Expect = 0.023
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
K C C K + + +LSKH++ H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
Score = 26.5 bits (59), Expect = 0.27
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKH 74
K + C C K F+ L +HI H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 29.3 bits (65), Expect = 0.059
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 9 TMEIRRTHTGDKPYKCRHPGCVKAFSQLSNLQSHSRC-HQTDKP 51
++E ++ +PY+C H GC AF+ NL H + H++D P
Sbjct: 8 SLEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP 51
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 28.5 bits (63), Expect = 0.066
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 21 PYKCRHPGCVKAFSQLSNLQSHSRCH 46
PY+C H GC K FS S L+ H + H
Sbjct: 3 PYECPHEGCDKRFSLPSRLKRHEKVH 28
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.3 bits (63), Expect = 0.069
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
KPY C+ PGC K ++ S+L+ H +
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 24.4 bits (53), Expect = 1.7
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 81 KTHICQY--CGKSYTQETYLSKHMQKH 105
K ++C+ C K YT + L KH++
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 28.3 bits (63), Expect = 0.080
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 19 DKPYKCRHPGCVKAFSQLSNLQSHSRCHQ 47
DKP+ C PGC + F+ +L H H+
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.6 bits (58), Expect = 0.30
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 20 KPYKCRHPGCVKAFSQLSNLQSHSRCH 46
KP+ C+ GC K F+ L +L HS H
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTH 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.7 bits (56), Expect = 0.65
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
+ H+C CGK++ + + L +H H
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVH 25
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 25.4 bits (55), Expect = 0.70
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 51 PYKCNSCYKCFVDETALLEH 70
P++C C KC+ + LLEH
Sbjct: 1 PFECPKCGKCYFRKENLLEH 20
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 25.1 bits (54), Expect = 0.93
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 52 YKCNSCYKCFVDETALLEHIPKHKD 76
YKC C + FV+++AL H HK+
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHKN 25
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 25.1 bits (55), Expect = 0.98
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKH 105
+++ C +C + + L HM H
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVH 28
Score = 23.1 bits (50), Expect = 5.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKDSKHL 80
+ Y C+ C + F AL H+ H+ +
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDRAR 34
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 25.9 bits (57), Expect = 1.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 75 KDSKHLKTHICQYCGKSYTQ 94
+DS + + C C ++T
Sbjct: 7 RDSTNRASFKCPVCSSTFTD 26
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.4 bits (56), Expect = 1.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 14/54 (25%)
Query: 49 DKP----YKCNSCYKCFVDETALLEHI--PKHKDS-KHLKTHICQYCGKSYTQE 95
D P ++C +C + F+D T L H HK K L + Y+QE
Sbjct: 9 DLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV-------EPYSQE 55
Score = 23.9 bits (52), Expect = 6.4
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 76 DSKHLKTHICQYCGKSYTQETYLSKHMQ--KHAER 108
D H C C + + T L H + H +R
Sbjct: 9 DLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKR 43
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.1 bits (59), Expect = 1.5
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 97 YLSKHMQKHAERSDKRPPIIGI 118
+L K++ + E +K P I
Sbjct: 11 FLDKYIPEWFETGNKCPLFIFF 32
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 24.3 bits (52), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 21 PYKCRHPGCVKAFSQLSNLQSHSRCH 46
P+KC C K FS+ L++H RCH
Sbjct: 1 PHKC--EVCGKCFSRKDKLKTHMRCH 24
Score = 23.1 bits (49), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 83 HICQYCGKSYTQETYLSKHMQKH 105
H C+ CGK ++++ L HM+ H
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCH 24
Score = 22.3 bits (47), Expect = 8.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 51 PYKCNSCYKCFVDETALLEHIPKH 74
P+KC C KCF + L H+ H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 24.3 bits (53), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQK 104
K ++C++C K T L +HM+K
Sbjct: 6 KLYLCEFCLKYMKSRTILQQHMKK 29
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 26.4 bits (57), Expect = 2.4
Identities = 18/173 (10%), Positives = 42/173 (24%), Gaps = 5/173 (2%)
Query: 39 LQSHSRCHQTDKPYKCNSCYKCFVDETALLEHIPKHKDSKHLKTHICQYCGKSYTQETYL 98
L L+ + + LK G+ + L
Sbjct: 43 LALAKGELVPVGKEGYGGKTPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALAL 102
Query: 99 SKHMQKHAERSDKRPPIIGIPRAALENPHYWPKVSPDTANNLSMGLPHHQHHLNHHQAYL 158
+ E +G A P ++ A + +
Sbjct: 103 RRAGIPF-EVVPGVTSAVGALSAL-GLPLTHRGLARSFAVATGHDPALPLPRADTLVLLM 160
Query: 159 PYNTISFPGKVMQQSSGPNTPVSVAVSNSFPNQLI---SLHQIRNYAHQPGST 208
P +T+ + + + P TP+++ +P + + + + S
Sbjct: 161 PLHTLGGLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGLGEGLPSP 213
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 23.3 bits (50), Expect = 3.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 83 HICQYCGKSYTQETYLSKHMQKH 105
+IC+ CG + + L KH++ H
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTH 24
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.5 bits (50), Expect = 4.7
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 84 ICQYCGKSYTQETYLSKH 101
+C CGK++T+ +++H
Sbjct: 6 VCSKCGKTFTRRNTMARH 23
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 25.5 bits (56), Expect = 5.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 83 HICQYCGKSYTQETYLSKHMQKHAERSDKRPP 114
++C++C K T L +HM+K PP
Sbjct: 32 YLCEFCLKYMKSRTILQQHMKK---CGWFHPP 60
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.1 bits (49), Expect = 5.6
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 81 KTHICQYCGKSYTQETYLSKHMQKHAERSDKRP 113
K C+ CGK + +L++H H S ++P
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSH---SGEKP 33
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.2 bits (55), Expect = 6.2
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 83 HICQYCGKSYTQETYLSKHMQK 104
+I + + + + ++ +K
Sbjct: 35 YIDDFTLQYFGSKKQYERYRKK 56
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.8 bits (48), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 50 KPYKCNSCYKCFVDETALLEHIPKHKD 76
KPYKC +C D ++L +H+ H D
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHSD 28
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 22.8 bits (49), Expect = 7.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 51 PYKCNSCYKCFVDETALLEHIPK 73
PY C C + F L+ H K
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQK 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.417
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 827,582
Number of extensions: 36710
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 136
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)