Query psy8190
Match_columns 348
No_of_seqs 282 out of 2493
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:55:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15108 biotin synthase; Prov 100.0 9.9E-59 2.1E-63 433.0 37.1 322 24-345 2-323 (345)
2 COG0502 BioB Biotin synthase a 100.0 4.5E-59 9.8E-64 422.1 32.5 309 26-337 11-322 (335)
3 PLN02389 biotin synthase 100.0 2.2E-58 4.7E-63 433.2 37.1 321 15-335 33-355 (379)
4 PRK08444 hypothetical protein; 100.0 1.5E-54 3.3E-59 404.0 30.7 308 22-339 6-345 (353)
5 PRK06256 biotin synthase; Vali 100.0 2.6E-53 5.7E-58 398.4 35.9 314 20-338 11-328 (336)
6 PRK05926 hypothetical protein; 100.0 9.6E-52 2.1E-56 387.6 30.6 323 4-340 7-368 (370)
7 TIGR03700 mena_SCO4494 putativ 100.0 7.5E-51 1.6E-55 382.3 30.2 308 22-339 4-346 (351)
8 PRK08508 biotin synthase; Prov 100.0 2.6E-50 5.6E-55 367.0 31.1 273 60-336 2-276 (279)
9 TIGR03551 F420_cofH 7,8-dideme 100.0 1E-49 2.2E-54 374.0 30.6 304 29-339 1-340 (343)
10 PRK07360 FO synthase subunit 2 100.0 1.1E-49 2.3E-54 376.6 30.0 312 21-339 12-362 (371)
11 PRK08445 hypothetical protein; 100.0 2E-49 4.2E-54 370.6 30.7 303 27-339 2-340 (348)
12 PRK09240 thiH thiamine biosynt 100.0 2.6E-49 5.7E-54 373.7 28.9 313 18-338 25-363 (371)
13 KOG2900|consensus 100.0 3.3E-50 7.1E-55 341.8 20.2 317 21-337 40-360 (380)
14 TIGR03699 mena_SCO4550 menaqui 100.0 5.6E-49 1.2E-53 369.4 30.1 306 27-339 1-335 (340)
15 PRK05927 hypothetical protein; 100.0 4.2E-49 9E-54 367.5 28.4 307 25-339 3-341 (350)
16 PRK07094 biotin synthase; Prov 100.0 3.7E-47 8.1E-52 355.0 35.0 272 29-308 1-279 (323)
17 TIGR00433 bioB biotin syntheta 100.0 1E-46 2.2E-51 348.1 35.1 292 38-332 2-296 (296)
18 TIGR02351 thiH thiazole biosyn 100.0 2E-47 4.4E-52 360.5 28.7 311 18-337 24-361 (366)
19 PRK09234 fbiC FO synthase; Rev 100.0 4.2E-46 9E-51 378.8 32.6 309 24-339 482-827 (843)
20 PRK09613 thiH thiamine biosynt 100.0 1.7E-45 3.7E-50 352.7 34.8 325 5-337 21-383 (469)
21 PRK09234 fbiC FO synthase; Rev 100.0 8.4E-45 1.8E-49 369.3 32.8 312 20-339 18-372 (843)
22 COG1060 ThiH Thiamine biosynth 100.0 4.9E-43 1.1E-47 326.4 28.9 314 20-339 12-358 (370)
23 TIGR00423 radical SAM domain p 100.0 2.7E-42 5.9E-47 319.5 26.6 271 62-339 1-304 (309)
24 TIGR03550 F420_cofG 7,8-dideme 100.0 2.9E-42 6.3E-47 320.5 25.4 264 67-339 7-302 (322)
25 PRK06267 hypothetical protein; 100.0 4E-40 8.6E-45 308.9 28.9 273 41-327 5-286 (350)
26 PRK06245 cofG FO synthase subu 100.0 9.5E-39 2.1E-43 299.6 27.9 273 59-340 5-307 (336)
27 PRK05904 coproporphyrinogen II 100.0 3.8E-30 8.3E-35 241.5 18.9 240 67-312 10-272 (353)
28 PRK07379 coproporphyrinogen II 100.0 2.8E-29 6.1E-34 240.0 19.4 236 69-312 14-288 (400)
29 PRK06294 coproporphyrinogen II 100.0 5.5E-29 1.2E-33 235.8 18.7 235 70-312 11-276 (370)
30 TIGR00539 hemN_rel putative ox 100.0 4.1E-29 8.8E-34 236.4 17.3 235 70-312 5-269 (360)
31 PRK09057 coproporphyrinogen II 100.0 5.3E-29 1.2E-33 236.8 17.9 232 69-308 8-272 (380)
32 PRK06582 coproporphyrinogen II 100.0 5.6E-29 1.2E-33 236.6 16.1 232 70-309 16-280 (390)
33 PRK08207 coproporphyrinogen II 100.0 9.6E-28 2.1E-32 233.1 24.8 247 23-277 116-393 (488)
34 PRK09058 coproporphyrinogen II 100.0 1.3E-28 2.9E-33 238.5 18.1 238 67-312 65-338 (449)
35 PRK12928 lipoyl synthase; Prov 100.0 1.5E-27 3.2E-32 217.3 22.4 229 31-271 28-268 (290)
36 PRK05799 coproporphyrinogen II 100.0 3.7E-28 7.9E-33 231.3 19.1 238 69-312 7-272 (374)
37 PRK08446 coproporphyrinogen II 100.0 1.5E-28 3.3E-33 231.2 14.8 233 71-312 6-263 (350)
38 PRK05628 coproporphyrinogen II 100.0 3.6E-28 7.8E-33 231.3 17.3 239 70-312 7-281 (375)
39 PRK08599 coproporphyrinogen II 100.0 8.3E-28 1.8E-32 229.0 18.1 235 72-312 8-273 (377)
40 PRK05660 HemN family oxidoredu 100.0 2.7E-27 5.9E-32 224.8 20.9 236 69-308 10-272 (378)
41 PRK08898 coproporphyrinogen II 100.0 1.4E-27 3E-32 228.1 17.5 232 69-308 23-286 (394)
42 PRK05481 lipoyl synthase; Prov 100.0 2.9E-26 6.3E-31 209.4 24.8 230 30-273 20-260 (289)
43 PRK08208 coproporphyrinogen II 99.9 1.6E-26 3.5E-31 223.1 19.2 251 50-310 29-307 (430)
44 COG0635 HemN Coproporphyrinoge 99.9 4.4E-26 9.5E-31 217.6 19.2 234 71-312 40-309 (416)
45 PTZ00413 lipoate synthase; Pro 99.9 3.1E-25 6.7E-30 203.2 23.2 192 72-272 156-358 (398)
46 TIGR00510 lipA lipoate synthas 99.9 4.9E-25 1.1E-29 201.1 23.1 197 68-272 67-272 (302)
47 TIGR01212 radical SAM protein, 99.9 3.2E-25 7E-30 204.2 21.6 222 49-279 6-254 (302)
48 TIGR03471 HpnJ hopanoid biosyn 99.9 2.6E-25 5.7E-30 217.7 21.2 183 66-256 198-385 (472)
49 TIGR01579 MiaB-like-C MiaB-lik 99.9 7.5E-25 1.6E-29 211.1 22.7 202 65-273 139-355 (414)
50 TIGR00538 hemN oxygen-independ 99.9 9.8E-25 2.1E-29 212.5 22.5 237 71-312 55-335 (455)
51 PRK13347 coproporphyrinogen II 99.9 1.2E-24 2.6E-29 211.5 22.2 237 70-311 55-335 (453)
52 TIGR02026 BchE magnesium-proto 99.9 7.9E-25 1.7E-29 215.1 20.2 180 67-256 196-385 (497)
53 PRK14331 (dimethylallyl)adenos 99.9 2E-24 4.4E-29 209.1 22.1 193 65-264 147-353 (437)
54 PRK08629 coproporphyrinogen II 99.9 3.4E-24 7.3E-29 206.2 22.2 236 68-312 55-314 (433)
55 PRK09249 coproporphyrinogen II 99.9 1.9E-24 4.1E-29 210.2 20.5 235 72-311 56-334 (453)
56 PRK14327 (dimethylallyl)adenos 99.9 2.5E-24 5.4E-29 209.9 21.3 188 64-258 212-413 (509)
57 COG1856 Uncharacterized homolo 99.9 6.5E-24 1.4E-28 178.3 19.8 234 67-308 13-251 (275)
58 PLN02428 lipoic acid synthase 99.9 1.7E-23 3.7E-28 193.0 24.4 198 67-273 105-311 (349)
59 TIGR00089 RNA modification enz 99.9 4.7E-24 1E-28 206.5 21.3 194 65-265 140-348 (429)
60 PRK14325 (dimethylallyl)adenos 99.9 9.2E-24 2E-28 205.2 23.0 198 66-270 149-363 (444)
61 TIGR01125 MiaB-like tRNA modif 99.9 1E-23 2.2E-28 204.0 23.2 193 66-265 137-344 (430)
62 PRK14332 (dimethylallyl)adenos 99.9 1E-23 2.2E-28 204.0 23.1 193 65-264 155-360 (449)
63 PRK14329 (dimethylallyl)adenos 99.9 1.3E-23 2.9E-28 204.5 23.7 193 65-264 169-382 (467)
64 PRK14340 (dimethylallyl)adenos 99.9 1.2E-23 2.6E-28 203.5 22.5 191 65-262 150-355 (445)
65 PRK14339 (dimethylallyl)adenos 99.9 1.1E-23 2.3E-28 202.7 22.1 195 64-265 127-339 (420)
66 PRK14335 (dimethylallyl)adenos 99.9 1.7E-23 3.7E-28 203.2 23.1 194 65-265 153-367 (455)
67 TIGR01574 miaB-methiolase tRNA 99.9 1.6E-23 3.6E-28 202.8 21.5 187 65-258 146-348 (438)
68 PRK14328 (dimethylallyl)adenos 99.9 1.5E-23 3.1E-28 203.2 21.1 195 65-266 148-357 (439)
69 PRK14336 (dimethylallyl)adenos 99.9 2.6E-23 5.7E-28 199.9 22.6 193 64-263 124-332 (418)
70 PRK14326 (dimethylallyl)adenos 99.9 3E-23 6.4E-28 203.2 23.1 187 65-258 158-358 (502)
71 PRK14338 (dimethylallyl)adenos 99.9 4E-23 8.6E-28 200.9 23.6 187 65-258 156-356 (459)
72 PRK14330 (dimethylallyl)adenos 99.9 2.4E-23 5.1E-28 201.6 21.8 185 65-256 141-339 (434)
73 PRK14334 (dimethylallyl)adenos 99.9 3.9E-23 8.6E-28 200.2 22.7 195 64-265 138-346 (440)
74 TIGR01578 MiaB-like-B MiaB-lik 99.9 4.3E-23 9.4E-28 198.7 22.8 193 65-264 134-340 (420)
75 PRK14337 (dimethylallyl)adenos 99.9 7.1E-23 1.5E-27 198.6 23.0 195 64-265 148-358 (446)
76 PRK14333 (dimethylallyl)adenos 99.9 3.9E-23 8.4E-28 200.6 20.5 194 65-265 149-364 (448)
77 PRK14862 rimO ribosomal protei 99.9 1.8E-22 3.9E-27 195.3 23.6 196 66-269 141-359 (440)
78 smart00729 Elp3 Elongator prot 99.9 1.3E-22 2.8E-27 177.3 18.7 183 67-258 4-201 (216)
79 TIGR01211 ELP3 histone acetylt 99.9 1.6E-21 3.5E-26 189.8 25.5 213 61-278 65-335 (522)
80 TIGR01210 conserved hypothetic 99.9 1.6E-21 3.5E-26 180.3 22.2 208 57-274 8-244 (313)
81 COG0621 MiaB 2-methylthioadeni 99.9 2.3E-21 5.1E-26 183.4 18.5 187 64-257 144-345 (437)
82 COG1242 Predicted Fe-S oxidore 99.9 4.1E-20 9E-25 160.9 20.4 220 50-279 13-259 (312)
83 cd01335 Radical_SAM Radical SA 99.8 5.7E-19 1.2E-23 152.4 20.3 179 69-255 2-187 (204)
84 COG1243 ELP3 Histone acetyltra 99.8 5.5E-18 1.2E-22 157.0 20.5 217 59-278 62-327 (515)
85 TIGR02666 moaA molybdenum cofa 99.8 2.2E-17 4.8E-22 155.0 22.9 206 56-271 4-216 (334)
86 PRK13361 molybdenum cofactor b 99.8 2.7E-17 5.8E-22 153.9 22.4 205 56-272 8-218 (329)
87 COG1032 Fe-S oxidoreductase [E 99.8 3.5E-18 7.6E-23 168.3 16.9 186 65-262 199-409 (490)
88 PLN02951 Molybderin biosynthes 99.8 3.9E-17 8.4E-22 154.6 23.1 205 56-271 52-261 (373)
89 COG0320 LipA Lipoate synthase 99.8 4.3E-17 9.3E-22 141.8 20.2 192 72-273 77-277 (306)
90 PRK00955 hypothetical protein; 99.8 2.7E-17 5.9E-22 161.6 20.3 221 25-255 255-525 (620)
91 PRK01254 hypothetical protein; 99.8 2.2E-17 4.8E-22 161.2 19.1 221 26-256 337-608 (707)
92 PF04055 Radical_SAM: Radical 99.8 7.8E-18 1.7E-22 140.9 13.9 157 68-231 1-166 (166)
93 PRK00164 moaA molybdenum cofac 99.8 1.9E-16 4.1E-21 148.6 22.6 206 56-272 11-222 (331)
94 TIGR02668 moaA_archaeal probab 99.7 3.1E-16 6.8E-21 145.2 21.5 202 56-270 4-210 (302)
95 COG2896 MoaA Molybdenum cofact 99.7 1.6E-15 3.6E-20 137.8 21.6 205 56-271 5-214 (322)
96 PRK05301 pyrroloquinoline quin 99.7 9.3E-15 2E-19 139.6 23.7 175 64-249 16-194 (378)
97 smart00876 BATS Biotin and Thi 99.7 1.6E-16 3.6E-21 120.5 9.2 93 242-334 1-94 (94)
98 TIGR03822 AblA_like_2 lysine-2 99.7 1.2E-14 2.6E-19 135.2 22.3 197 65-280 89-298 (321)
99 PF06968 BATS: Biotin and Thia 99.7 1.1E-16 2.3E-21 121.2 6.8 92 243-334 2-93 (93)
100 TIGR01290 nifB nitrogenase cof 99.7 2.3E-14 5.1E-19 138.2 24.2 206 67-278 27-261 (442)
101 TIGR02493 PFLA pyruvate format 99.7 2.7E-14 5.9E-19 127.4 23.0 195 72-274 22-234 (235)
102 TIGR02109 PQQ_syn_pqqE coenzym 99.6 4.8E-14 1E-18 133.7 23.3 173 65-248 8-184 (358)
103 TIGR03470 HpnH hopanoid biosyn 99.6 8.9E-14 1.9E-18 129.3 23.9 219 41-272 4-225 (318)
104 PRK11145 pflA pyruvate formate 99.6 5.8E-13 1.3E-17 119.7 22.6 196 72-275 27-240 (246)
105 TIGR02495 NrdG2 anaerobic ribo 99.5 2.7E-12 5.8E-17 110.9 20.5 156 72-235 23-183 (191)
106 COG1031 Uncharacterized Fe-S o 99.5 1.7E-12 3.8E-17 120.4 18.9 202 47-257 167-414 (560)
107 PRK13762 tRNA-modifying enzyme 99.5 3.8E-12 8.3E-17 118.2 20.9 197 72-277 65-292 (322)
108 PRK14455 ribosomal RNA large s 99.5 1.2E-11 2.6E-16 116.3 24.4 189 72-274 116-324 (356)
109 PRK14456 ribosomal RNA large s 99.5 1.5E-11 3.3E-16 115.7 24.6 204 68-286 125-352 (368)
110 PRK14463 ribosomal RNA large s 99.5 2E-11 4.4E-16 114.3 23.9 204 68-286 107-324 (349)
111 COG2516 Biotin synthase-relate 99.5 1.4E-12 3.1E-17 116.3 15.2 203 72-282 38-258 (339)
112 PRK14460 ribosomal RNA large s 99.5 1.4E-11 3E-16 115.6 22.6 200 72-285 109-330 (354)
113 KOG2672|consensus 99.5 1.4E-12 3E-17 113.6 13.9 172 70-248 116-295 (360)
114 COG2100 Predicted Fe-S oxidore 99.4 1.2E-11 2.6E-16 110.2 18.7 202 67-272 108-324 (414)
115 COG4277 Predicted DNA-binding 99.4 2.2E-12 4.7E-17 113.7 13.7 196 72-271 61-280 (404)
116 PRK14469 ribosomal RNA large s 99.4 5.1E-11 1.1E-15 111.9 23.9 198 72-284 108-322 (343)
117 PRK14468 ribosomal RNA large s 99.4 6E-11 1.3E-15 111.0 23.3 200 72-285 100-319 (343)
118 TIGR00238 KamA family protein. 99.4 4.1E-11 8.8E-16 111.9 21.9 194 67-281 116-322 (331)
119 PRK14459 ribosomal RNA large s 99.4 1.2E-10 2.7E-15 109.2 24.5 192 72-274 128-346 (373)
120 TIGR03820 lys_2_3_AblA lysine- 99.4 9.2E-11 2E-15 111.2 22.7 193 67-279 111-315 (417)
121 PRK14467 ribosomal RNA large s 99.4 1.6E-10 3.6E-15 107.9 22.5 204 68-286 103-328 (348)
122 TIGR03821 AblA_like_1 lysine-2 99.4 9.6E-11 2.1E-15 108.9 20.5 192 68-280 100-304 (321)
123 TIGR00048 radical SAM enzyme, 99.4 3.1E-10 6.7E-15 106.7 24.1 188 72-274 112-320 (355)
124 PRK14462 ribosomal RNA large s 99.4 2.6E-10 5.6E-15 106.6 22.7 199 72-285 117-336 (356)
125 TIGR03278 methan_mark_10 putat 99.4 2.1E-10 4.5E-15 109.1 22.2 165 97-268 53-235 (404)
126 PRK14470 ribosomal RNA large s 99.4 2.9E-10 6.2E-15 105.9 22.7 187 72-273 104-306 (336)
127 PRK14466 ribosomal RNA large s 99.3 5.1E-10 1.1E-14 103.9 23.9 201 72-286 110-324 (345)
128 KOG4355|consensus 99.3 2.9E-11 6.2E-16 109.9 14.5 206 67-279 190-414 (547)
129 PRK13758 anaerobic sulfatase-m 99.3 2.7E-10 5.7E-15 108.6 22.0 172 72-249 12-198 (370)
130 COG1180 PflA Pyruvate-formate 99.3 5.8E-10 1.3E-14 100.5 21.8 194 72-275 42-240 (260)
131 PRK14457 ribosomal RNA large s 99.3 9.9E-10 2.2E-14 102.7 23.6 200 72-285 108-328 (345)
132 COG0535 Predicted Fe-S oxidore 99.3 7.1E-10 1.5E-14 104.4 22.3 176 63-250 18-199 (347)
133 PRK14454 ribosomal RNA large s 99.3 1.2E-09 2.7E-14 102.1 23.4 198 72-284 108-323 (342)
134 PRK13745 anaerobic sulfatase-m 99.3 1.3E-09 2.7E-14 105.3 22.4 179 65-249 14-206 (412)
135 COG0731 Fe-S oxidoreductases [ 99.2 1.2E-09 2.6E-14 98.5 18.1 166 74-247 33-213 (296)
136 PRK11194 ribosomal RNA large s 99.2 7.9E-09 1.7E-13 97.4 24.2 189 72-274 110-324 (372)
137 PRK14465 ribosomal RNA large s 99.2 1.4E-08 2.9E-13 94.6 24.4 201 72-286 112-328 (342)
138 COG1244 Predicted Fe-S oxidore 99.2 4E-09 8.8E-14 94.6 19.8 202 70-279 52-284 (358)
139 KOG2492|consensus 99.2 7E-10 1.5E-14 101.8 14.6 201 67-274 223-466 (552)
140 COG2108 Uncharacterized conser 99.1 1.4E-09 3E-14 97.5 14.8 190 67-274 31-242 (353)
141 PRK14453 chloramphenicol/florf 99.1 2.6E-08 5.5E-13 93.3 23.0 204 72-286 107-329 (347)
142 TIGR02494 PFLE_PFLC glycyl-rad 99.1 8E-09 1.7E-13 95.4 19.1 171 98-273 106-292 (295)
143 PRK14464 ribosomal RNA large s 99.1 2.6E-08 5.7E-13 92.6 21.3 201 72-286 103-316 (344)
144 COG0641 AslB Arylsulfatase reg 99.1 2.3E-08 5E-13 94.5 20.0 187 72-270 14-217 (378)
145 PRK14461 ribosomal RNA large s 99.0 8.2E-08 1.8E-12 89.5 22.0 192 72-274 114-339 (371)
146 PRK10076 pyruvate formate lyas 99.0 1.3E-07 2.8E-12 82.7 19.6 170 98-274 19-204 (213)
147 TIGR03365 Bsubt_queE 7-cyano-7 98.9 3.1E-07 6.7E-12 82.0 20.1 129 72-216 29-160 (238)
148 cd03174 DRE_TIM_metallolyase D 98.9 3.8E-07 8.3E-12 82.7 20.8 220 97-333 15-248 (265)
149 COG1533 SplB DNA repair photol 98.9 1.9E-07 4.2E-12 85.4 17.7 173 67-245 32-220 (297)
150 COG5014 Predicted Fe-S oxidore 98.8 2.2E-07 4.8E-12 76.0 12.9 147 68-217 44-196 (228)
151 KOG2535|consensus 98.8 6.8E-07 1.5E-11 80.8 17.0 131 148-278 226-365 (554)
152 COG1509 KamA Lysine 2,3-aminom 98.7 3E-06 6.5E-11 77.8 18.6 192 67-279 114-319 (369)
153 COG0820 Predicted Fe-S-cluster 98.7 3.1E-06 6.6E-11 78.1 18.5 173 72-254 108-300 (349)
154 KOG2876|consensus 98.6 9E-08 2E-12 83.5 5.2 190 68-269 15-212 (323)
155 TIGR03217 4OH_2_O_val_ald 4-hy 98.5 0.00012 2.5E-09 68.6 24.7 210 98-334 21-247 (333)
156 PF13353 Fer4_12: 4Fe-4S singl 98.4 5.4E-07 1.2E-11 73.4 6.7 92 72-167 12-106 (139)
157 PF00682 HMGL-like: HMGL-like 98.4 2.8E-05 6.2E-10 69.3 18.2 215 98-331 11-237 (237)
158 PRK08195 4-hyroxy-2-oxovalerat 98.4 0.00025 5.4E-09 66.5 24.4 209 98-334 22-248 (337)
159 TIGR02826 RNR_activ_nrdG3 anae 98.3 1E-05 2.2E-10 66.5 12.1 96 72-176 22-117 (147)
160 COG1313 PflX Uncharacterized F 98.3 4.5E-05 9.7E-10 68.0 16.6 191 73-275 126-327 (335)
161 cd07943 DRE_TIM_HOA 4-hydroxy- 98.3 0.001 2.2E-08 60.4 24.7 209 98-334 19-244 (263)
162 cd07939 DRE_TIM_NifV Streptomy 98.2 0.00061 1.3E-08 61.7 22.3 213 97-334 16-242 (259)
163 cd07944 DRE_TIM_HOA_like 4-hyd 98.2 0.0014 3E-08 59.5 23.5 205 98-330 17-238 (266)
164 cd07938 DRE_TIM_HMGL 3-hydroxy 98.2 0.00079 1.7E-08 61.4 22.0 218 97-334 16-258 (274)
165 COG1625 Fe-S oxidoreductase, r 98.2 5.8E-05 1.3E-09 70.7 14.3 200 73-283 35-253 (414)
166 PRK05692 hydroxymethylglutaryl 98.1 0.0013 2.9E-08 60.3 22.7 221 97-334 22-264 (287)
167 cd07940 DRE_TIM_IPMS 2-isoprop 98.1 0.0014 3.1E-08 59.5 22.8 214 98-331 17-245 (268)
168 PF13394 Fer4_14: 4Fe-4S singl 98.1 5.1E-06 1.1E-10 65.8 5.7 83 72-157 5-92 (119)
169 PLN02746 hydroxymethylglutaryl 98.1 0.0026 5.7E-08 59.6 23.5 221 97-334 64-306 (347)
170 cd07937 DRE_TIM_PC_TC_5S Pyruv 98.0 0.0017 3.8E-08 59.2 21.5 209 97-334 17-251 (275)
171 cd07948 DRE_TIM_HCS Saccharomy 98.0 0.0039 8.5E-08 56.4 23.3 210 97-331 18-240 (262)
172 TIGR02090 LEU1_arch isopropylm 98.0 0.0013 2.8E-08 62.5 20.8 215 97-334 18-244 (363)
173 TIGR02491 NrdG anaerobic ribon 98.0 8.9E-05 1.9E-09 61.6 11.1 86 73-161 23-111 (154)
174 PRK11858 aksA trans-homoaconit 98.0 0.0028 6E-08 60.6 22.6 214 97-334 22-248 (378)
175 TIGR02660 nifV_homocitr homoci 97.9 0.0036 7.8E-08 59.6 21.1 213 97-334 19-245 (365)
176 cd07945 DRE_TIM_CMS Leptospira 97.7 0.018 3.9E-07 52.7 22.7 219 97-334 15-251 (280)
177 cd07941 DRE_TIM_LeuA3 Desulfob 97.7 0.011 2.3E-07 54.0 21.2 214 97-333 16-254 (273)
178 PRK00915 2-isopropylmalate syn 97.7 0.0078 1.7E-07 59.8 21.0 214 97-330 22-251 (513)
179 PRK11121 nrdG anaerobic ribonu 97.7 0.00067 1.4E-08 56.3 11.3 88 67-159 20-111 (154)
180 PRK12330 oxaloacetate decarbox 97.7 0.014 3.1E-07 57.3 21.7 211 98-334 24-259 (499)
181 PRK14041 oxaloacetate decarbox 97.6 0.019 4.2E-07 56.0 22.3 209 98-334 22-255 (467)
182 PRK09389 (R)-citramalate synth 97.6 0.015 3.3E-07 57.4 21.7 213 97-334 20-246 (488)
183 COG0602 NrdG Organic radical a 97.6 0.00032 6.9E-09 61.4 8.3 87 68-159 25-113 (212)
184 PRK08091 ribulose-phosphate 3- 97.5 0.033 7.2E-07 49.1 20.4 183 98-313 22-211 (228)
185 PRK12331 oxaloacetate decarbox 97.5 0.028 6.1E-07 54.8 21.9 209 98-334 23-256 (448)
186 TIGR01108 oadA oxaloacetate de 97.5 0.024 5.2E-07 57.1 21.5 211 98-334 18-251 (582)
187 PRK12581 oxaloacetate decarbox 97.5 0.021 4.6E-07 55.6 20.3 211 98-334 32-265 (468)
188 PRK09282 pyruvate carboxylase 97.5 0.031 6.8E-07 56.4 22.0 211 98-334 23-256 (592)
189 PRK08745 ribulose-phosphate 3- 97.4 0.075 1.6E-06 46.8 20.5 195 99-329 14-217 (223)
190 PRK08005 epimerase; Validated 97.4 0.077 1.7E-06 46.3 20.1 182 98-313 10-195 (210)
191 PRK14040 oxaloacetate decarbox 97.3 0.07 1.5E-06 53.9 21.4 208 98-334 24-257 (593)
192 PRK14057 epimerase; Provisiona 97.2 0.065 1.4E-06 47.9 18.7 202 98-333 29-247 (254)
193 COG1964 Predicted Fe-S oxidore 97.2 0.015 3.1E-07 55.3 14.9 139 82-234 78-228 (475)
194 TIGR00973 leuA_bact 2-isopropy 97.2 0.053 1.1E-06 53.7 19.2 210 98-329 20-247 (494)
195 PRK14042 pyruvate carboxylase 97.1 0.094 2E-06 52.8 20.7 211 98-334 23-256 (596)
196 TIGR00977 LeuA_rel 2-isopropyl 97.1 0.14 3E-06 51.1 21.7 193 97-306 19-227 (526)
197 PRK12344 putative alpha-isopro 97.1 0.11 2.5E-06 51.7 21.1 213 97-333 23-260 (524)
198 PRK08883 ribulose-phosphate 3- 97.1 0.14 3E-06 45.1 19.2 182 98-313 9-199 (220)
199 PRK09722 allulose-6-phosphate 97.1 0.18 3.8E-06 44.7 19.6 179 99-311 13-199 (229)
200 PLN03228 methylthioalkylmalate 97.0 0.22 4.8E-06 49.2 21.8 212 97-330 102-341 (503)
201 TIGR03128 RuMP_HxlA 3-hexulose 96.9 0.19 4.2E-06 43.5 18.8 177 98-312 9-189 (206)
202 COG0036 Rpe Pentose-5-phosphat 96.9 0.19 4.2E-06 43.7 17.7 184 99-315 14-203 (220)
203 COG0119 LeuA Isopropylmalate/h 96.9 0.13 2.8E-06 49.6 18.3 191 97-306 20-220 (409)
204 TIGR03279 cyano_FeS_chp putati 96.8 0.036 7.7E-07 53.2 13.9 120 152-272 122-249 (433)
205 PTZ00170 D-ribulose-5-phosphat 96.8 0.25 5.5E-06 43.7 18.5 184 98-312 16-204 (228)
206 COG5016 Pyruvate/oxaloacetate 96.8 0.056 1.2E-06 50.8 14.6 185 98-306 25-228 (472)
207 PRK11613 folP dihydropteroate 96.8 0.16 3.5E-06 46.3 17.6 155 61-234 14-207 (282)
208 PLN02321 2-isopropylmalate syn 96.7 0.41 8.9E-06 48.6 21.4 220 97-331 104-343 (632)
209 TIGR00735 hisF imidazoleglycer 96.6 0.35 7.5E-06 43.6 18.5 201 99-334 31-253 (254)
210 TIGR00970 leuA_yeast 2-isoprop 96.5 0.66 1.4E-05 46.8 21.3 226 97-334 44-296 (564)
211 KOG3111|consensus 96.5 0.43 9.3E-06 40.5 18.8 195 99-329 15-215 (224)
212 PRK07535 methyltetrahydrofolat 96.5 0.19 4.2E-06 45.4 15.9 191 97-309 21-228 (261)
213 PF00834 Ribul_P_3_epim: Ribul 96.4 0.018 3.9E-07 50.0 8.4 180 99-312 10-197 (201)
214 PRK14847 hypothetical protein; 96.4 0.86 1.9E-05 42.6 20.5 221 97-334 50-299 (333)
215 PF05853 DUF849: Prokaryotic p 96.2 0.56 1.2E-05 42.7 17.2 223 97-336 22-262 (272)
216 cd07947 DRE_TIM_Re_CS Clostrid 95.8 1.5 3.1E-05 40.2 21.2 222 98-334 18-263 (279)
217 PRK12999 pyruvate carboxylase; 95.8 1.9 4.1E-05 47.3 21.8 211 98-334 552-793 (1146)
218 PRK13753 dihydropteroate synth 95.7 0.99 2.1E-05 41.1 16.5 134 98-234 22-197 (279)
219 TIGR01496 DHPS dihydropteroate 95.6 0.82 1.8E-05 41.2 15.8 74 98-173 20-100 (257)
220 cd00739 DHPS DHPS subgroup of 95.5 0.52 1.1E-05 42.5 13.9 135 98-234 21-194 (257)
221 cd04731 HisF The cyclase subun 95.4 1.8 3.9E-05 38.5 17.7 201 102-329 28-242 (243)
222 PRK14024 phosphoribosyl isomer 95.3 1.9 4.1E-05 38.4 16.9 127 103-247 34-169 (241)
223 PLN02334 ribulose-phosphate 3- 95.0 1.9 4E-05 38.2 15.7 186 99-313 18-206 (229)
224 TIGR00736 nifR3_rel_arch TIM-b 94.9 2.6 5.7E-05 37.3 18.9 182 105-310 33-221 (231)
225 cd01299 Met_dep_hydrolase_A Me 94.8 0.75 1.6E-05 43.1 13.4 84 97-182 116-207 (342)
226 cd00423 Pterin_binding Pterin 94.7 2.1 4.6E-05 38.6 15.5 74 98-173 21-101 (258)
227 PLN02617 imidazole glycerol ph 94.7 4.1 8.9E-05 40.8 18.7 222 99-334 265-536 (538)
228 COG0107 HisF Imidazoleglycerol 94.7 0.18 3.9E-06 44.0 7.9 217 99-334 28-253 (256)
229 PRK15452 putative protease; Pr 94.5 0.88 1.9E-05 44.4 13.3 84 156-244 11-96 (443)
230 cd04732 HisA HisA. Phosphorib 94.5 2.7 5.9E-05 37.0 15.6 184 102-311 30-221 (234)
231 PRK13307 bifunctional formalde 94.4 2 4.4E-05 41.1 15.2 165 136-335 214-383 (391)
232 cd02810 DHOD_DHPD_FMN Dihydroo 94.4 3.9 8.5E-05 37.4 17.3 173 130-310 80-273 (289)
233 PRK13585 1-(5-phosphoribosyl)- 94.3 3.2 6.8E-05 36.9 15.7 184 103-312 34-225 (241)
234 cd00331 IGPS Indole-3-glycerol 94.2 3.5 7.5E-05 36.0 19.2 175 98-312 28-204 (217)
235 TIGR00007 phosphoribosylformim 94.2 3.6 7.9E-05 36.2 17.8 179 103-310 30-219 (230)
236 TIGR00284 dihydropteroate synt 94.2 1.3 2.9E-05 43.7 13.9 125 101-233 165-305 (499)
237 PF03102 NeuB: NeuB family; I 94.0 4 8.8E-05 36.4 15.5 143 131-306 54-198 (241)
238 COG0826 Collagenase and relate 93.9 2.4 5.2E-05 40.0 14.4 143 157-330 15-159 (347)
239 PRK00748 1-(5-phosphoribosyl)- 93.9 4.3 9.3E-05 35.8 16.6 182 102-310 31-221 (233)
240 cd04740 DHOD_1B_like Dihydroor 93.8 5.3 0.00011 36.7 19.1 192 132-335 74-289 (296)
241 TIGR01769 GGGP geranylgeranylg 93.8 2.8 6E-05 36.4 13.7 105 56-175 100-205 (205)
242 PRK02083 imidazole glycerol ph 93.8 4.7 0.0001 36.1 18.5 206 99-334 31-251 (253)
243 TIGR03849 arch_ComA phosphosul 93.7 3.1 6.7E-05 36.9 13.8 128 99-243 10-153 (237)
244 TIGR03572 WbuZ glycosyl amidat 93.6 4.8 0.0001 35.5 16.1 180 104-310 33-228 (232)
245 TIGR01303 IMP_DH_rel_1 IMP deh 93.3 1 2.3E-05 44.3 11.5 129 101-246 224-359 (475)
246 PRK00043 thiE thiamine-phospha 93.2 5.1 0.00011 34.6 17.7 165 102-312 22-191 (212)
247 TIGR01163 rpe ribulose-phospha 93.2 5.1 0.00011 34.5 18.3 181 98-312 8-196 (210)
248 cd07942 DRE_TIM_LeuA Mycobacte 93.0 7.1 0.00015 35.8 23.7 222 97-333 19-267 (284)
249 PRK07565 dihydroorotate dehydr 92.9 8.2 0.00018 36.2 16.9 192 131-334 85-297 (334)
250 COG2876 AroA 3-deoxy-D-arabino 92.9 4.6 0.0001 36.2 13.5 181 99-310 57-250 (286)
251 COG2513 PrpB PEP phosphonomuta 92.8 7.4 0.00016 35.4 16.0 154 150-309 20-186 (289)
252 TIGR01235 pyruv_carbox pyruvat 92.8 16 0.00034 40.3 20.2 208 98-333 550-790 (1143)
253 TIGR01182 eda Entner-Doudoroff 92.6 6.3 0.00014 34.2 17.5 165 96-313 15-180 (204)
254 PRK07807 inosine 5-monophospha 92.4 1.5 3.3E-05 43.3 11.1 120 101-229 226-350 (479)
255 PF00478 IMPDH: IMP dehydrogen 92.3 1.4 3.1E-05 41.4 10.3 117 104-229 110-231 (352)
256 COG0106 HisA Phosphoribosylfor 92.3 7.7 0.00017 34.4 15.2 177 104-310 34-222 (241)
257 PRK03739 2-isopropylmalate syn 92.0 15 0.00032 37.1 21.4 220 97-333 48-296 (552)
258 cd04726 KGPDC_HPS 3-Keto-L-gul 91.8 7.7 0.00017 33.2 15.6 176 98-312 10-189 (202)
259 PRK11572 copper homeostasis pr 91.4 6.3 0.00014 35.2 12.9 112 99-227 71-187 (248)
260 KOG2550|consensus 91.3 1.1 2.4E-05 42.5 8.2 115 105-228 254-373 (503)
261 TIGR01768 GGGP-family geranylg 91.2 9.8 0.00021 33.5 15.1 178 104-310 17-209 (223)
262 PRK14114 1-(5-phosphoribosyl)- 91.1 1.4 3.1E-05 39.3 8.7 82 102-185 31-114 (241)
263 TIGR01304 IMP_DH_rel_2 IMP deh 91.0 8.6 0.00019 36.6 14.2 165 130-312 116-287 (369)
264 PRK05096 guanosine 5'-monophos 90.9 3.1 6.6E-05 38.8 10.7 113 107-228 113-232 (346)
265 PRK13587 1-(5-phosphoribosyl)- 90.9 1.5 3.2E-05 39.0 8.5 180 99-310 32-222 (234)
266 PRK07028 bifunctional hexulose 90.9 17 0.00036 35.5 16.7 179 97-313 12-194 (430)
267 cd00740 MeTr MeTr subgroup of 90.9 12 0.00025 33.7 16.1 196 97-308 22-237 (252)
268 PF05913 DUF871: Bacterial pro 90.7 0.7 1.5E-05 43.7 6.6 79 99-177 12-98 (357)
269 PF00809 Pterin_bind: Pterin b 90.5 2.6 5.5E-05 36.8 9.5 74 98-173 16-97 (210)
270 TIGR03279 cyano_FeS_chp putati 90.5 1.6 3.5E-05 42.1 8.8 68 159-235 168-253 (433)
271 cd02911 arch_FMN Archeal FMN-b 90.4 12 0.00027 33.1 18.2 124 106-243 40-171 (233)
272 PF10113 Fibrillarin_2: Fibril 90.3 5.4 0.00012 38.0 11.8 105 190-309 203-307 (505)
273 PRK13586 1-(5-phosphoribosyl)- 90.3 2.1 4.4E-05 38.1 8.9 176 102-310 31-219 (232)
274 PRK06552 keto-hydroxyglutarate 90.3 12 0.00025 32.8 16.1 162 97-312 21-186 (213)
275 cd00003 PNPsynthase Pyridoxine 90.3 0.62 1.3E-05 40.9 5.3 116 100-224 72-196 (234)
276 PRK09490 metH B12-dependent me 90.2 24 0.00052 39.0 18.2 197 98-308 381-600 (1229)
277 KOG2367|consensus 90.2 19 0.00042 35.0 18.9 191 97-306 75-280 (560)
278 PRK12737 gatY tagatose-bisphos 90.1 9.3 0.0002 35.0 13.2 126 106-245 89-233 (284)
279 PF02679 ComA: (2R)-phospho-3- 90.0 2.6 5.7E-05 37.5 9.2 130 98-243 22-166 (244)
280 PF04476 DUF556: Protein of un 90.0 8.7 0.00019 33.9 12.1 133 100-249 66-213 (235)
281 PRK08649 inosine 5-monophospha 89.7 18 0.00038 34.6 15.1 164 130-313 115-289 (368)
282 PRK13397 3-deoxy-7-phosphohept 89.6 15 0.00032 33.0 21.2 205 98-330 26-247 (250)
283 TIGR01305 GMP_reduct_1 guanosi 89.5 5.3 0.00011 37.3 11.0 114 106-228 111-231 (343)
284 PRK09195 gatY tagatose-bisphos 89.4 12 0.00025 34.4 13.1 124 107-244 90-232 (284)
285 cd01321 ADGF Adenosine deamina 89.2 5.3 0.00011 37.7 11.2 88 131-235 177-277 (345)
286 COG2185 Sbm Methylmalonyl-CoA 89.1 3.4 7.5E-05 33.5 8.4 73 98-178 50-124 (143)
287 PRK13125 trpA tryptophan synth 89.1 16 0.00035 32.6 21.0 182 99-312 16-217 (244)
288 PRK05718 keto-hydroxyglutarate 89.0 15 0.00032 32.1 14.4 162 96-310 22-184 (212)
289 PRK07709 fructose-bisphosphate 88.9 13 0.00029 34.0 13.2 122 109-244 95-233 (285)
290 COG0800 Eda 2-keto-3-deoxy-6-p 88.9 6.8 0.00015 34.0 10.5 114 96-245 20-134 (211)
291 TIGR00737 nifR3_yhdG putative 88.8 12 0.00027 34.7 13.3 151 146-309 62-222 (319)
292 PF00977 His_biosynth: Histidi 88.8 1.1 2.4E-05 39.7 6.0 182 98-310 29-221 (229)
293 PRK06015 keto-hydroxyglutarate 88.6 15 0.00033 31.7 16.1 164 96-312 11-175 (201)
294 COG5016 Pyruvate/oxaloacetate 88.5 9.1 0.0002 36.5 11.8 101 94-208 91-201 (472)
295 PRK12330 oxaloacetate decarbox 88.4 28 0.00062 34.5 17.8 166 98-279 152-337 (499)
296 cd00959 DeoC 2-deoxyribose-5-p 88.3 3.9 8.5E-05 35.4 9.1 74 98-173 128-201 (203)
297 PF01081 Aldolase: KDPG and KH 88.3 10 0.00022 32.7 11.3 163 97-312 16-179 (196)
298 PRK01033 imidazole glycerol ph 88.3 19 0.00041 32.4 17.8 181 104-310 33-227 (258)
299 PRK07998 gatY putative fructos 88.2 11 0.00023 34.6 12.0 121 109-244 92-229 (283)
300 PTZ00124 adenosine deaminase; 88.0 8.7 0.00019 36.5 11.8 87 133-235 206-301 (362)
301 PF03740 PdxJ: Pyridoxal phosp 87.9 1.6 3.5E-05 38.6 6.3 116 100-222 73-200 (239)
302 PRK07114 keto-hydroxyglutarate 87.9 13 0.00029 32.7 12.0 169 96-312 22-191 (222)
303 COG1816 Add Adenosine deaminas 87.8 5.4 0.00012 37.5 10.0 81 96-178 148-232 (345)
304 PRK08610 fructose-bisphosphate 87.8 19 0.00041 33.0 13.4 122 109-244 95-233 (286)
305 COG3589 Uncharacterized conser 87.5 24 0.00053 32.8 15.1 77 100-178 15-101 (360)
306 cd04724 Tryptophan_synthase_al 87.5 20 0.00044 31.9 17.9 183 99-311 12-217 (242)
307 TIGR00126 deoC deoxyribose-pho 87.4 3.6 7.9E-05 35.9 8.3 74 98-173 129-202 (211)
308 PRK12738 kbaY tagatose-bisphos 87.3 16 0.00035 33.5 12.7 123 108-244 91-232 (286)
309 PRK00507 deoxyribose-phosphate 87.2 5.7 0.00012 35.0 9.4 85 98-186 133-217 (221)
310 TIGR03217 4OH_2_O_val_ald 4-hy 87.2 3.2 7E-05 39.0 8.3 57 102-162 115-175 (333)
311 TIGR01858 tag_bisphos_ald clas 87.0 18 0.0004 33.0 12.8 124 107-244 88-230 (282)
312 PLN02591 tryptophan synthase 86.9 17 0.00037 32.6 12.4 79 97-175 114-218 (250)
313 PRK12857 fructose-1,6-bisphosp 86.8 22 0.00049 32.5 13.3 123 108-244 91-232 (284)
314 TIGR01768 GGGP-family geranylg 86.7 6.3 0.00014 34.7 9.3 74 98-175 132-208 (223)
315 PRK05265 pyridoxine 5'-phospha 86.7 2.7 5.9E-05 37.1 7.0 117 100-226 75-200 (239)
316 COG3142 CutC Uncharacterized p 86.7 16 0.00035 32.1 11.5 115 100-228 72-189 (241)
317 PRK13398 3-deoxy-7-phosphohept 86.6 25 0.00054 31.9 22.3 185 99-312 39-234 (266)
318 PF10566 Glyco_hydro_97: Glyco 86.4 13 0.00028 33.8 11.4 107 98-213 29-157 (273)
319 cd00452 KDPG_aldolase KDPG and 86.2 20 0.00044 30.5 17.0 163 96-312 11-174 (190)
320 PRK06806 fructose-bisphosphate 86.1 27 0.00059 31.9 19.4 189 98-307 26-228 (281)
321 TIGR00559 pdxJ pyridoxine 5'-p 86.1 2.8 6E-05 37.0 6.7 116 100-224 72-196 (237)
322 PF01729 QRPTase_C: Quinolinat 86.0 2.5 5.5E-05 35.5 6.3 62 107-176 93-156 (169)
323 cd02801 DUS_like_FMN Dihydrour 85.9 23 0.0005 30.9 15.8 98 146-246 54-160 (231)
324 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.9 5.4 0.00012 36.3 8.9 59 100-160 117-179 (275)
325 PRK11815 tRNA-dihydrouridine s 85.9 22 0.00048 33.3 13.3 97 147-245 65-172 (333)
326 PRK08185 hypothetical protein; 85.8 23 0.0005 32.4 12.8 119 108-244 85-228 (283)
327 PRK07259 dihydroorotate dehydr 85.8 29 0.00062 31.9 16.2 191 132-334 76-291 (301)
328 cd00947 TBP_aldolase_IIB Tagat 85.7 21 0.00045 32.6 12.4 128 99-244 81-226 (276)
329 cd02812 PcrB_like PcrB_like pr 85.6 7.2 0.00016 34.2 9.1 71 98-175 132-204 (219)
330 cd04739 DHOD_like Dihydroorota 85.3 32 0.0007 32.1 17.5 192 131-335 83-296 (325)
331 PLN02495 oxidoreductase, actin 85.2 37 0.00079 32.6 18.5 196 131-335 96-329 (385)
332 PRK04128 1-(5-phosphoribosyl)- 84.8 4.8 0.0001 35.6 7.8 80 99-184 31-112 (228)
333 cd00958 DhnA Class I fructose- 84.8 20 0.00043 31.6 11.9 125 99-247 74-217 (235)
334 COG0106 HisA Phosphoribosylfor 84.8 6.8 0.00015 34.7 8.5 96 95-200 141-239 (241)
335 TIGR03572 WbuZ glycosyl amidat 84.6 3.9 8.6E-05 36.1 7.3 72 102-175 154-227 (232)
336 PRK00507 deoxyribose-phosphate 84.4 28 0.0006 30.6 18.6 177 98-306 19-205 (221)
337 PF01207 Dus: Dihydrouridine s 84.4 7.9 0.00017 35.9 9.4 83 164-248 75-162 (309)
338 TIGR02320 PEP_mutase phosphoen 84.4 33 0.00072 31.4 18.0 201 114-332 38-263 (285)
339 PRK05848 nicotinate-nucleotide 84.4 7.3 0.00016 35.5 8.9 64 106-177 194-259 (273)
340 PRK05581 ribulose-phosphate 3- 84.2 27 0.00058 30.3 17.2 183 98-313 13-202 (220)
341 PRK13396 3-deoxy-7-phosphohept 84.1 38 0.00083 32.0 19.4 186 98-312 112-309 (352)
342 PRK08195 4-hyroxy-2-oxovalerat 84.0 4.4 9.6E-05 38.1 7.6 57 102-162 116-176 (337)
343 TIGR00167 cbbA ketose-bisphosp 83.7 27 0.00058 32.1 12.3 124 107-244 93-236 (288)
344 PLN02446 (5-phosphoribosyl)-5- 83.5 5.4 0.00012 36.0 7.5 68 102-175 44-111 (262)
345 PRK05692 hydroxymethylglutaryl 83.3 34 0.00073 31.4 12.9 105 98-209 152-264 (287)
346 PF01116 F_bP_aldolase: Fructo 83.1 29 0.00062 31.9 12.3 122 109-244 91-235 (287)
347 PRK12331 oxaloacetate decarbox 83.1 30 0.00066 33.9 13.1 67 104-175 99-174 (448)
348 TIGR00007 phosphoribosylformim 82.9 7.7 0.00017 34.1 8.4 67 105-175 149-218 (230)
349 cd04723 HisA_HisF Phosphoribos 82.8 5.7 0.00012 35.2 7.5 74 102-178 36-110 (233)
350 PRK12595 bifunctional 3-deoxy- 82.8 44 0.00096 31.7 20.8 184 99-312 130-325 (360)
351 PF02126 PTE: Phosphotriestera 82.8 14 0.0003 34.4 10.2 132 97-242 99-253 (308)
352 PRK02227 hypothetical protein; 82.7 30 0.00065 30.7 11.7 152 100-271 66-232 (238)
353 cd03174 DRE_TIM_metallolyase D 82.6 24 0.00052 31.5 11.7 92 104-204 77-186 (265)
354 PTZ00314 inosine-5'-monophosph 82.6 23 0.00049 35.3 12.3 119 102-229 241-364 (495)
355 COG0159 TrpA Tryptophan syntha 82.3 11 0.00024 34.0 9.0 50 159-208 35-94 (265)
356 cd02803 OYE_like_FMN_family Ol 82.2 10 0.00022 35.3 9.3 77 99-175 226-311 (327)
357 PF00977 His_biosynth: Histidi 82.2 10 0.00023 33.4 8.9 71 98-175 147-220 (229)
358 TIGR01361 DAHP_synth_Bsub phos 82.2 38 0.00083 30.6 18.5 185 99-312 37-232 (260)
359 TIGR03569 NeuB_NnaB N-acetylne 82.1 45 0.00097 31.3 17.2 142 133-306 76-220 (329)
360 COG0854 PdxJ Pyridoxal phospha 82.1 5 0.00011 34.9 6.4 124 99-229 72-208 (243)
361 CHL00200 trpA tryptophan synth 81.8 18 0.00039 32.8 10.3 79 97-175 127-231 (263)
362 TIGR01430 aden_deam adenosine 81.7 19 0.00041 33.5 11.0 20 197-216 224-247 (324)
363 smart00642 Aamy Alpha-amylase 81.7 4 8.7E-05 34.1 5.8 30 190-219 67-97 (166)
364 TIGR01334 modD putative molybd 81.5 10 0.00022 34.6 8.7 67 105-178 199-266 (277)
365 TIGR00742 yjbN tRNA dihydrouri 81.5 46 0.001 31.0 14.4 85 162-248 74-165 (318)
366 PF01208 URO-D: Uroporphyrinog 81.3 23 0.00049 33.1 11.4 70 105-176 186-264 (343)
367 TIGR01463 mtaA_cmuA methyltran 81.1 40 0.00087 31.5 13.0 72 103-175 182-262 (340)
368 TIGR02320 PEP_mutase phosphoen 81.1 7.6 0.00016 35.6 7.8 14 25-38 57-70 (285)
369 PRK10415 tRNA-dihydrouridine s 81.0 13 0.00027 34.8 9.4 84 102-186 150-237 (321)
370 TIGR03586 PseI pseudaminic aci 80.9 49 0.0011 31.0 19.1 176 99-306 15-219 (327)
371 PF04551 GcpE: GcpE protein; 80.7 28 0.00062 32.7 11.3 113 97-217 27-142 (359)
372 PRK10550 tRNA-dihydrouridine s 80.5 20 0.00042 33.4 10.4 98 101-200 148-254 (312)
373 TIGR00640 acid_CoA_mut_C methy 80.4 13 0.00028 29.8 8.1 69 98-173 40-110 (132)
374 PRK12581 oxaloacetate decarbox 80.2 36 0.00078 33.5 12.4 113 100-217 103-242 (468)
375 TIGR01303 IMP_DH_rel_1 IMP deh 80.1 58 0.0013 32.3 14.0 131 155-311 224-359 (475)
376 PRK13585 1-(5-phosphoribosyl)- 80.1 13 0.00028 33.0 8.8 69 104-175 152-222 (241)
377 TIGR01037 pyrD_sub1_fam dihydr 80.1 48 0.0011 30.4 17.6 194 132-336 75-293 (300)
378 cd00331 IGPS Indole-3-glycerol 80.0 15 0.00032 32.0 9.0 64 108-175 135-201 (217)
379 TIGR01302 IMP_dehydrog inosine 79.9 21 0.00046 35.0 11.0 131 101-246 223-358 (450)
380 PRK05286 dihydroorotate dehydr 79.9 55 0.0012 30.9 15.7 168 132-309 124-318 (344)
381 PRK06843 inosine 5-monophospha 79.7 31 0.00066 33.3 11.6 128 101-243 152-284 (404)
382 COG1809 (2R)-phospho-3-sulfola 79.5 24 0.00052 30.9 9.6 106 115-235 44-166 (258)
383 PRK14042 pyruvate carboxylase 79.4 12 0.00026 38.0 9.2 164 98-279 151-334 (596)
384 PF03932 CutC: CutC family; I 79.3 4.7 0.0001 34.9 5.5 72 99-173 70-145 (201)
385 PRK07428 nicotinate-nucleotide 79.2 13 0.00029 34.0 8.7 65 106-178 208-274 (288)
386 TIGR02129 hisA_euk phosphoribo 79.1 12 0.00027 33.6 8.2 65 104-176 41-105 (253)
387 PRK13523 NADPH dehydrogenase N 78.9 10 0.00023 35.6 8.2 78 98-175 224-305 (337)
388 cd02911 arch_FMN Archeal FMN-b 78.9 16 0.00034 32.4 8.9 80 101-186 152-231 (233)
389 TIGR00737 nifR3_yhdG putative 78.9 24 0.00053 32.7 10.6 84 102-186 148-235 (319)
390 TIGR01859 fruc_bis_ald_ fructo 78.9 52 0.0011 30.1 13.7 118 104-229 87-221 (282)
391 PRK04326 methionine synthase; 78.8 56 0.0012 30.4 15.3 147 102-270 162-316 (330)
392 COG1646 Predicted phosphate-bi 78.8 46 0.001 29.4 13.6 195 101-330 28-240 (240)
393 TIGR00676 fadh2 5,10-methylene 78.7 52 0.0011 29.9 12.5 106 98-217 70-192 (272)
394 cd00381 IMPDH IMPDH: The catal 78.6 50 0.0011 30.9 12.6 126 102-243 94-225 (325)
395 cd07943 DRE_TIM_HOA 4-hydroxy- 78.4 18 0.00039 32.6 9.3 60 101-164 112-175 (263)
396 PRK09196 fructose-1,6-bisphosp 78.4 30 0.00064 32.7 10.8 79 107-185 91-203 (347)
397 cd07939 DRE_TIM_NifV Streptomy 78.3 9.5 0.00021 34.3 7.5 65 98-165 103-174 (259)
398 PRK15452 putative protease; Pr 78.3 14 0.00031 36.1 9.1 69 107-175 16-96 (443)
399 PRK08385 nicotinate-nucleotide 78.2 16 0.00036 33.3 8.9 64 107-178 195-262 (278)
400 PF00218 IGPS: Indole-3-glycer 78.2 52 0.0011 29.6 14.5 171 104-314 71-243 (254)
401 TIGR03249 KdgD 5-dehydro-4-deo 78.2 19 0.00042 33.1 9.6 104 97-209 22-133 (296)
402 PF02581 TMP-TENI: Thiamine mo 78.0 41 0.00088 28.3 13.2 160 100-307 11-175 (180)
403 PF00682 HMGL-like: HMGL-like 78.0 6.4 0.00014 34.8 6.2 56 103-161 110-168 (237)
404 PLN02746 hydroxymethylglutaryl 77.9 64 0.0014 30.5 14.7 78 98-178 194-276 (347)
405 TIGR01919 hisA-trpF 1-(5-phosp 77.6 15 0.00033 32.7 8.5 178 99-310 32-226 (243)
406 TIGR02082 metH 5-methyltetrahy 77.6 1.2E+02 0.0027 33.7 17.0 197 98-308 365-584 (1178)
407 PRK04169 geranylgeranylglycery 77.5 30 0.00065 30.7 10.1 74 98-175 137-213 (232)
408 TIGR00736 nifR3_rel_arch TIM-b 77.4 17 0.00037 32.2 8.6 71 101-175 148-220 (231)
409 PRK14041 oxaloacetate decarbox 77.3 24 0.00053 34.7 10.4 76 98-177 150-230 (467)
410 cd04734 OYE_like_3_FMN Old yel 77.2 19 0.0004 34.0 9.3 89 99-187 226-329 (343)
411 PRK07084 fructose-bisphosphate 77.1 50 0.0011 30.8 11.8 77 107-184 101-193 (321)
412 cd04733 OYE_like_2_FMN Old yel 77.0 21 0.00046 33.5 9.7 77 99-175 234-322 (338)
413 COG3623 SgaU Putative L-xylulo 77.0 16 0.00035 32.2 7.9 56 152-209 15-70 (287)
414 cd00429 RPE Ribulose-5-phospha 77.0 46 0.001 28.4 17.7 183 98-313 9-198 (211)
415 PRK06801 hypothetical protein; 76.9 60 0.0013 29.8 13.0 118 104-229 87-224 (286)
416 cd02801 DUS_like_FMN Dihydrour 76.9 8.5 0.00018 33.7 6.7 85 101-186 138-226 (231)
417 PF01136 Peptidase_U32: Peptid 76.8 19 0.00041 31.6 8.9 65 101-178 2-70 (233)
418 cd04731 HisF The cyclase subun 76.8 9.7 0.00021 33.8 7.1 73 99-175 147-223 (243)
419 cd02932 OYE_YqiM_FMN Old yello 76.8 15 0.00032 34.5 8.6 77 99-175 239-320 (336)
420 cd00408 DHDPS-like Dihydrodipi 76.5 28 0.00061 31.5 10.2 111 97-216 14-133 (281)
421 PRK07329 hypothetical protein; 76.4 23 0.0005 31.6 9.3 70 133-210 165-243 (246)
422 TIGR02146 LysS_fung_arch homoc 76.3 67 0.0014 29.9 21.8 189 98-306 17-212 (344)
423 PRK07896 nicotinate-nucleotide 76.2 19 0.00042 33.0 8.8 66 106-178 211-277 (289)
424 COG0352 ThiE Thiamine monophos 75.9 53 0.0012 28.6 16.0 153 104-307 24-184 (211)
425 TIGR00677 fadh2_euk methylenet 75.9 59 0.0013 29.7 12.0 106 98-217 71-196 (281)
426 cd00945 Aldolase_Class_I Class 75.8 46 0.001 27.9 20.8 178 99-308 11-200 (201)
427 COG2100 Predicted Fe-S oxidore 75.8 50 0.0011 30.8 11.1 121 130-275 141-283 (414)
428 PRK06096 molybdenum transport 75.7 19 0.00041 33.0 8.6 66 105-178 200-267 (284)
429 cd00537 MTHFR Methylenetetrahy 75.5 63 0.0014 29.2 12.9 106 98-217 70-195 (274)
430 cd00453 FTBP_aldolase_II Fruct 75.4 68 0.0015 30.1 12.1 120 107-227 103-261 (340)
431 cd02811 IDI-2_FMN Isopentenyl- 75.3 72 0.0016 29.8 16.8 157 137-310 101-285 (326)
432 PRK08207 coproporphyrinogen II 75.2 70 0.0015 31.8 13.1 102 98-213 232-357 (488)
433 COG2513 PrpB PEP phosphonomuta 75.2 12 0.00025 34.2 6.9 70 101-177 166-236 (289)
434 PF13714 PEP_mutase: Phosphoen 75.1 20 0.00043 31.9 8.4 67 100-176 154-220 (238)
435 PRK03620 5-dehydro-4-deoxygluc 75.1 26 0.00057 32.3 9.6 105 97-210 24-136 (303)
436 TIGR00262 trpA tryptophan synt 75.0 63 0.0014 29.0 20.8 185 99-312 22-230 (256)
437 cd04732 HisA HisA. Phosphorib 75.0 14 0.0003 32.5 7.5 68 104-175 149-219 (234)
438 cd00377 ICL_PEPM Members of th 75.0 61 0.0013 28.9 15.2 174 153-335 14-200 (243)
439 PRK00694 4-hydroxy-3-methylbut 74.8 85 0.0018 31.7 13.2 131 97-234 41-226 (606)
440 cd00443 ADA_AMPD Adenosine/AMP 74.7 35 0.00076 31.5 10.4 89 131-235 151-245 (305)
441 KOG2584|consensus 74.7 28 0.0006 33.6 9.5 61 111-171 156-218 (522)
442 cd00950 DHDPS Dihydrodipicolin 74.7 18 0.00039 32.9 8.4 97 129-234 17-124 (284)
443 TIGR00222 panB 3-methyl-2-oxob 74.7 65 0.0014 29.2 11.6 112 109-235 30-170 (263)
444 PF07745 Glyco_hydro_53: Glyco 74.6 39 0.00085 31.7 10.6 158 109-278 32-230 (332)
445 PF01116 F_bP_aldolase: Fructo 74.6 70 0.0015 29.4 13.8 189 98-306 25-232 (287)
446 PF07745 Glyco_hydro_53: Glyco 74.5 6.6 0.00014 36.8 5.5 115 156-281 25-172 (332)
447 TIGR01858 tag_bisphos_ald clas 74.5 70 0.0015 29.3 13.3 138 97-244 23-173 (282)
448 PRK08673 3-deoxy-7-phosphohept 74.3 78 0.0017 29.8 20.8 185 99-312 105-300 (335)
449 cd00952 CHBPH_aldolase Trans-o 73.9 30 0.00066 32.0 9.7 77 98-175 26-110 (309)
450 PRK08318 dihydropyrimidine deh 73.9 90 0.0019 30.3 18.4 193 132-333 83-310 (420)
451 PRK04147 N-acetylneuraminate l 73.8 36 0.00078 31.2 10.2 109 97-214 20-138 (293)
452 PRK00278 trpC indole-3-glycero 73.8 68 0.0015 28.9 19.2 171 102-313 71-244 (260)
453 PRK14040 oxaloacetate decarbox 73.8 65 0.0014 32.9 12.6 112 103-219 99-236 (593)
454 cd07944 DRE_TIM_HOA_like 4-hyd 73.7 39 0.00085 30.5 10.2 109 98-219 106-221 (266)
455 PF05913 DUF871: Bacterial pro 73.6 7.5 0.00016 36.9 5.6 91 110-212 85-175 (357)
456 PF00128 Alpha-amylase: Alpha 73.3 5 0.00011 36.4 4.4 70 159-228 8-88 (316)
457 PLN03033 2-dehydro-3-deoxyphos 73.2 74 0.0016 29.0 19.1 184 99-311 28-242 (290)
458 PF06180 CbiK: Cobalt chelatas 73.1 17 0.00037 32.9 7.6 146 98-252 58-211 (262)
459 PRK07107 inosine 5-monophospha 73.1 51 0.0011 32.9 11.6 76 98-178 238-315 (502)
460 PF00701 DHDPS: Dihydrodipicol 73.1 30 0.00064 31.6 9.4 127 97-234 18-154 (289)
461 PRK09441 cytoplasmic alpha-amy 73.0 8.5 0.00018 38.1 6.2 28 191-218 79-107 (479)
462 cd00950 DHDPS Dihydrodipicolin 72.9 34 0.00074 31.1 9.8 111 97-216 17-136 (284)
463 PRK11858 aksA trans-homoaconit 72.8 51 0.0011 31.6 11.2 64 98-164 109-179 (378)
464 PRK09282 pyruvate carboxylase 72.8 1.2E+02 0.0025 31.1 14.2 76 98-177 151-231 (592)
465 PF01884 PcrB: PcrB family; I 72.7 26 0.00056 31.0 8.4 102 59-175 108-211 (230)
466 PRK06978 nicotinate-nucleotide 72.6 24 0.00053 32.4 8.5 65 105-178 216-280 (294)
467 COG2896 MoaA Molybdenum cofact 72.5 64 0.0014 30.1 11.2 110 98-218 74-192 (322)
468 cd02071 MM_CoA_mut_B12_BD meth 72.4 34 0.00073 26.8 8.4 69 98-173 37-107 (122)
469 PRK01033 imidazole glycerol ph 72.3 28 0.00061 31.3 8.9 69 104-175 155-226 (258)
470 TIGR02668 moaA_archaeal probab 72.3 79 0.0017 28.9 13.8 90 105-210 75-181 (302)
471 PRK13399 fructose-1,6-bisphosp 72.3 89 0.0019 29.5 13.0 78 107-184 91-202 (347)
472 cd07945 DRE_TIM_CMS Leptospira 72.0 32 0.0007 31.4 9.3 111 98-219 108-229 (280)
473 PRK03170 dihydrodipicolinate s 72.0 79 0.0017 28.8 15.5 110 97-215 18-136 (292)
474 PF09587 PGA_cap: Bacterial ca 72.0 46 0.001 29.6 10.2 136 156-309 63-223 (250)
475 TIGR02090 LEU1_arch isopropylm 71.9 42 0.00091 31.9 10.4 67 98-167 105-178 (363)
476 TIGR01769 GGGP geranylgeranylg 71.7 67 0.0015 27.9 17.9 178 101-309 11-205 (205)
477 PRK12737 gatY tagatose-bisphos 71.7 82 0.0018 28.9 14.2 188 98-306 26-229 (284)
478 PRK09016 quinolinate phosphori 71.6 25 0.00054 32.4 8.3 65 105-178 219-283 (296)
479 PLN00196 alpha-amylase; Provis 71.5 10 0.00023 36.9 6.2 30 190-219 89-119 (428)
480 PRK13587 1-(5-phosphoribosyl)- 71.5 28 0.00062 30.8 8.6 72 98-175 148-221 (234)
481 PRK02506 dihydroorotate dehydr 71.4 87 0.0019 29.0 14.7 197 131-336 75-301 (310)
482 PRK01254 hypothetical protein; 71.1 91 0.002 32.2 12.7 108 100-210 467-590 (707)
483 PRK12290 thiE thiamine-phospha 71.1 1.1E+02 0.0023 29.9 16.9 157 106-306 222-389 (437)
484 PF00962 A_deaminase: Adenosin 71.0 26 0.00056 32.6 8.7 62 114-178 164-227 (331)
485 PRK09358 adenosine deaminase; 70.9 67 0.0015 30.0 11.5 73 131-217 180-258 (340)
486 COG0269 SgbH 3-hexulose-6-phos 70.8 72 0.0016 27.9 12.0 96 106-212 72-170 (217)
487 PLN03228 methylthioalkylmalate 70.6 56 0.0012 32.6 11.2 65 98-164 202-273 (503)
488 PRK02261 methylaspartate mutas 70.6 19 0.0004 29.1 6.6 109 107-233 24-135 (137)
489 cd04740 DHOD_1B_like Dihydroor 70.6 79 0.0017 28.9 11.7 110 190-307 72-184 (296)
490 cd00953 KDG_aldolase KDG (2-ke 70.5 85 0.0018 28.5 15.3 109 97-214 16-129 (279)
491 cd02931 ER_like_FMN Enoate red 70.3 33 0.00072 32.8 9.4 93 98-190 249-352 (382)
492 TIGR00126 deoC deoxyribose-pho 70.3 74 0.0016 27.8 18.6 175 98-306 15-201 (211)
493 PRK05458 guanosine 5'-monophos 70.0 97 0.0021 29.0 12.3 128 102-245 97-231 (326)
494 COG0413 PanB Ketopantoate hydr 70.0 38 0.00083 30.4 8.8 51 98-157 90-141 (268)
495 TIGR02456 treS_nterm trehalose 70.0 14 0.0003 37.2 7.0 42 185-226 67-110 (539)
496 PRK06559 nicotinate-nucleotide 69.9 31 0.00067 31.7 8.5 65 105-178 208-272 (290)
497 TIGR00620 sporelyase spore pho 69.9 44 0.00096 28.8 9.0 101 134-235 11-116 (199)
498 PRK07709 fructose-bisphosphate 69.8 91 0.002 28.6 13.4 137 97-243 25-175 (285)
499 PRK15447 putative protease; Pr 69.7 12 0.00025 34.7 5.9 50 158-213 18-68 (301)
500 cd04738 DHOD_2_like Dihydrooro 69.6 97 0.0021 28.9 17.2 169 132-309 114-309 (327)
No 1
>PRK15108 biotin synthase; Provisional
Probab=100.00 E-value=9.9e-59 Score=433.05 Aligned_cols=322 Identities=55% Similarity=0.962 Sum_probs=294.5
Q ss_pred ccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHH
Q psy8190 24 SQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESV 103 (348)
Q Consensus 24 ~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 103 (348)
+-+++||++|++.|++.|+.+|++.|+++|+++|.++.|+++.++++.|++|+.+|.||++++.+....+.+..++++||
T Consensus 2 ~~~~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI 81 (345)
T PRK15108 2 AHRPRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQV 81 (345)
T ss_pred CccCCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHH
Confidence 34679999999999988999999999999999995578999999998899999999999999754334445556999999
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
++.++.+.+.|+++|++++++..|+..+.+++.++++.+++.++.++++.|.++++.++.|+++|++++++++||+++.|
T Consensus 82 ~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f 161 (345)
T PRK15108 82 LESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFY 161 (345)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhc
Confidence 99999999999999999877656656678999999999998888889999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHH
Q psy8190 184 GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPL 263 (348)
Q Consensus 184 ~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~ 263 (348)
..+++++++++|+++++.++++|+.+++++|+|+|||.+|+++++..++++++.+++|++++|+|.+||||++.++.++.
T Consensus 162 ~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~ 241 (345)
T PRK15108 162 GNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAF 241 (345)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999954378999999999999999988889999
Q ss_pred HHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchhhhhHHhh
Q psy8190 264 EFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMKN 343 (348)
Q Consensus 264 ~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~~~~~~~~ 343 (348)
+.++++|++|+++|+..+++++||..++.+.++.+|.+|||++|.|++++|+.|.+.+++.+||+++||+|++|+-.--+
T Consensus 242 e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~~~~ 321 (345)
T PRK15108 242 DFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGD 321 (345)
T ss_pred HHHHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCcccccccccc
Confidence 99999999999999999999999988888899999999999999999877888999999999999999999999976555
Q ss_pred hh
Q psy8190 344 NI 345 (348)
Q Consensus 344 ~~ 345 (348)
|.
T Consensus 322 ~~ 323 (345)
T PRK15108 322 NE 323 (345)
T ss_pred hh
Confidence 43
No 2
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-59 Score=422.08 Aligned_cols=309 Identities=54% Similarity=0.883 Sum_probs=287.9
Q ss_pred CCCCCHHHHHHhhcCChH--HHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHH
Q psy8190 26 SLIWKLDEVINLFNLPFN--DLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESV 103 (348)
Q Consensus 26 ~~~ls~~e~~~Ll~~~~~--~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 103 (348)
+..||.+|++.|++.|.. .|+.+|..+|++ |+|+.|.++.+|+++|..||.+|.||++++++..+...|..+++++|
T Consensus 11 ~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~-~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeI 89 (335)
T COG0502 11 GERWTLDEALALLDLPDEDELLFEAAQKHRLH-FDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEI 89 (335)
T ss_pred cCCcCHHHHHHHHcCCcchHHHHHHHHHHHHh-cCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHH
Confidence 578999999999998654 477777777655 55999999999999888889999999999987666667777999999
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
++.|+.+++.|+.+++++.+|.+ ...+.+++.++++.++ ..+++++++.|.++++.++.|+++|++++++++||+++.
T Consensus 90 le~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~ 168 (335)
T COG0502 90 LEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEF 168 (335)
T ss_pred HHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHHH
Confidence 99999999999999999888776 5678999999999999 579999999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCH
Q psy8190 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 262 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~ 262 (348)
|+.|+++|++++++++++.++++|+.+|++.|+|+|||.+|+++++..|+++.+ |++|+++.|+|.|||||++.++.++
T Consensus 169 y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~ 247 (335)
T COG0502 169 YENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDP 247 (335)
T ss_pred HcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCCH
Confidence 999999999999999999999999999999999999999999999999999986 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchhh
Q psy8190 263 LEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 263 ~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~~ 337 (348)
.+.++++|++|+++|+..|++++||+.+.+..+..++.+|||++++|+.++|+.|+..+++.++++++|++|...
T Consensus 248 ~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~ 322 (335)
T COG0502 248 FEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELL 322 (335)
T ss_pred HHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCcccc
Confidence 999999999999999999999999999999999999999999999999777899988999999999999998854
No 3
>PLN02389 biotin synthase
Probab=100.00 E-value=2.2e-58 Score=433.21 Aligned_cols=321 Identities=49% Similarity=0.849 Sum_probs=290.9
Q ss_pred HHHhhhhhcccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCcc
Q psy8190 15 IKKNNAISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITA 94 (348)
Q Consensus 15 ~~~~~~~~~~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~ 94 (348)
...+..+.......+|.+|++.|+..|+.+|+..|+++++++|.|++|+++++++++|++|+.+|.||+|++.++.+.+.
T Consensus 33 ~~~~~~~~~~~~~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~ 112 (379)
T PLN02389 33 IAAERAIREGPRNDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKA 112 (379)
T ss_pred ccccccccccccCCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcc
Confidence 33344445556778999999999977899999999999988886679999999999999999999999999865555556
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy8190 95 TKILSIESVITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
|..+++++|++.++.+.+.|+++|++++++. ...+...+++.++++.+++.+++++++.|.+++|.++.|++||++++
T Consensus 113 ~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~ 192 (379)
T PLN02389 113 QKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAY 192 (379)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 7679999999999999999999999975321 22224578999999999988899999999999999999999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
++++||+++.|+.+++++++++|+++++.++++|+++++++|+|+|||.+|+++++.++++++..++++++++|+|.|||
T Consensus 193 ~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GT 272 (379)
T PLN02389 193 NHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGT 272 (379)
T ss_pred EeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCC
Confidence 99999998999999999999999999999999999999999999999999999999999999533899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCC
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 332 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~ 332 (348)
||++.+++++++.++++|++|+++|+..+++++||..++.+.++.+|.+|||++|.|+|++|+.|++.++|.+||+++||
T Consensus 273 pL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~ 352 (379)
T PLN02389 273 PLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGL 352 (379)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCC
Confidence 99998899999999999999999999999999999888888899999999999999998789999999999999999999
Q ss_pred Cch
Q psy8190 333 NTR 335 (348)
Q Consensus 333 ~p~ 335 (348)
+|.
T Consensus 353 ~~~ 355 (379)
T PLN02389 353 IPK 355 (379)
T ss_pred Ccc
Confidence 987
No 4
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-54 Score=404.01 Aligned_cols=308 Identities=16% Similarity=0.213 Sum_probs=275.7
Q ss_pred hcccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEE--EEEEeecCCCCCCCCcCCCCCCCCCCCccccccC
Q psy8190 22 SSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILS 99 (348)
Q Consensus 22 ~~~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~ 99 (348)
+...++++|.+|++.|++.++.+|+..|+++|++++ |++|+++ .+|++ ||.|+.+|.||+|++.++.. .+|. ++
T Consensus 6 kv~~g~~ls~eeal~Ll~~dl~~L~~~A~~vR~~~~-G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~~~-~~y~-ls 81 (353)
T PRK08444 6 KLENNERLNQEEAVKLYDLDLFTLGKYADKKRTKLH-GKKVYFNVNRHINP-TNICADVCKFCAFSAHRKNP-NPYT-MS 81 (353)
T ss_pred HHhcCCCCCHHHHHHHhhcCHHHHHHHHHHHHHHhc-CCEEEEEecCCccc-ccccccCCccCCCccCCCCC-cccc-CC
Confidence 346789999999999998889999999999998888 9999999 56777 99999999999999865433 5685 89
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHHH
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKK 166 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~ 166 (348)
+|||++.++++.+.|+++|+|+||. +| ..+++++.++++.|++. ++++++ +.|...+|.++.|++
T Consensus 82 ~eeI~~~a~~a~~~G~~ei~iv~G~-~p-~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lke 159 (353)
T PRK08444 82 HEEILEIVKNSVKRGIKEVHIVSAH-NP-NYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE 159 (353)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccC-CC-CCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999884 44 34789999999999984 678886 678889999999999
Q ss_pred hCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 167 VGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 167 aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
||++++++ +.|+ ++++++.|+|+| +.++|++.++.+|++|+++++++|||+|||.+|+++++..+++++ .++++|
T Consensus 160 AGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq--~~t~gf 237 (353)
T PRK08444 160 YGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ--DKTGGF 237 (353)
T ss_pred hCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc--cccCCc
Confidence 99999999 6999 899999999987 558889999999999999999999999999999999999999999 899999
Q ss_pred cccccc----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccccchhhHHHHHHhCccee---eeCCeeccC
Q psy8190 244 NNLVQI----KGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTT 315 (348)
Q Consensus 244 ~~l~P~----~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~ 315 (348)
+.|+|. +|||+.+.+++++.++++++|++|++||+. +|+++| ..++.+..+.+|.+||||+ +.++++...
T Consensus 238 ~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w--~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ 315 (353)
T PRK08444 238 NAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIPHIKAYW--ATLTLNLALVAQEFGANDLDGTIEKESIQSA 315 (353)
T ss_pred eEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc--ccCcHHHHHHHHhcCCccCccccccccchhh
Confidence 999999 899999888899999999999999999995 788775 7788899999999999999 556777777
Q ss_pred CCC------CchHHHHHHHHcCCCchhhhh
Q psy8190 316 DNT------KTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 316 ~g~------~~~~~~~~i~~~G~~p~~~~~ 339 (348)
+|+ +.+++.++|+++||+|++|+-
T Consensus 316 ag~~~~~~~~~~~l~~~i~~~g~~p~~R~t 345 (353)
T PRK08444 316 AGAKSANGLSLEDFIFLIKDSGFIPVERDS 345 (353)
T ss_pred ccCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 762 347899999999999999974
No 5
>PRK06256 biotin synthase; Validated
Probab=100.00 E-value=2.6e-53 Score=398.39 Aligned_cols=314 Identities=35% Similarity=0.600 Sum_probs=282.3
Q ss_pred hhhcccCCCCCHHHHHHhhcC---ChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCcccc
Q psy8190 20 AISSSQSLIWKLDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATK 96 (348)
Q Consensus 20 ~~~~~~~~~ls~~e~~~Ll~~---~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~ 96 (348)
+.+...++.+|++|++.||+. ++.+|+..|+++|+++| |+.|.++++++++|++|+++|.||+++..+......|+
T Consensus 11 ~~~~~~g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~ 89 (336)
T PRK06256 11 ARKLLEGEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFC-GKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYA 89 (336)
T ss_pred HHHHHcCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhC-CCeEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceec
Confidence 344567899999999999985 36889999999988777 89999999999889999999999999986543334576
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++++|+++++.+.+.|+.+++|++++..|...+.+++.++++.+++ .++.++++.|.++++.++.|+++|++++.++
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecC
Confidence 789999999999999999999988766555554556799999999987 4678888999999999999999999999999
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy8190 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+||++++|+.+++++++++++++++.++++|+.+++++|+|+|||.+++.+++.++++++ ++.+++++|+|.||||++
T Consensus 170 lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l~P~pGT~l~ 247 (336)
T PRK06256 170 LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLE 247 (336)
T ss_pred CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeecccccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCch
Q psy8190 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTR 335 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~ 335 (348)
+.+++++.+++++++++|+++|+..|++++||+....+.+..+| +|||+++.|+| +|+.|.+.+++.+||+++|++|.
T Consensus 248 ~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~-lt~~g~~~~~d~~~~~~~g~~~~ 325 (336)
T PRK06256 248 NHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNY-LTTVGQPATADLDMIEDLGFEIE 325 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCc-ccCCCCChHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999999999654567788888 89999999997 58999999999999999999985
Q ss_pred hhh
Q psy8190 336 NIK 338 (348)
Q Consensus 336 ~~~ 338 (348)
...
T Consensus 326 ~~~ 328 (336)
T PRK06256 326 LDA 328 (336)
T ss_pred cCc
Confidence 443
No 6
>PRK05926 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-52 Score=387.55 Aligned_cols=323 Identities=15% Similarity=0.151 Sum_probs=272.1
Q ss_pred cccccccccchHHHhhhhhcccCCCCCHHHHHHhhcC----ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCC
Q psy8190 4 KIIQSSKESNSIKKNNAISSSQSLIWKLDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTED 78 (348)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~Ll~~----~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~ 78 (348)
+||.+.+.+.. -+.+...+++||++|++.|++. ++.+|+..|+++|++++ |+.|+++++++++ ||.|+.+
T Consensus 7 ~~~~~~~~~~~----~~~kv~~g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~-G~~V~~~~~~nin~Tn~C~~d 81 (370)
T PRK05926 7 RILPKSSWLKT----LFDDYLSGARLSEEDALQLLLLTDAEDQRALWSFADLIRANRV-GDTVYYSSTLYLYPTNFCQFN 81 (370)
T ss_pred ccccccHHHHH----HHHHHHcCCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc-CCeEEEEEeeeeecCCCCCCC
Confidence 56666443322 2233467899999999999843 46889999999998887 9999999998885 9999999
Q ss_pred CCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEec---
Q psy8190 79 CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTL--- 153 (348)
Q Consensus 79 C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~--- 153 (348)
|.||+|++.. .....| .+++|||++.++++ +.|+++|+|+|| .+| ..+.+++.++++.|++. +++++...
T Consensus 82 C~FCaf~~~~-~~~~~~-~ls~eeI~~~a~~a-~~G~~ei~iv~G-~~p-~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~E 156 (370)
T PRK05926 82 CTFCSFYAKP-GDPKGW-FYTPDQLVQSIKEN-PSPITETHIVAG-CFP-SCNLAYYEELFSKIKQNFPDLHIKALTAIE 156 (370)
T ss_pred CCccccccCC-CCcccc-cCCHHHHHHHHHHH-hcCCCEEEEEeC-cCC-CCCHHHHHHHHHHHHHhCCCeeEEECCHHH
Confidence 9999988753 222344 59999999999988 689999999987 555 46889999999999985 56666432
Q ss_pred --------CCCCHHHHHHHHHhCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHH
Q psy8190 154 --------GMLNENQAYRLKKVGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRD 222 (348)
Q Consensus 154 --------g~l~~e~l~~Lk~aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e 222 (348)
+..++|.++.|++||++++++ |.|+ .+++++.++|++ +.++|+++++.+|++|+++++++|||+|||.+
T Consensus 157 i~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~e 236 (370)
T PRK05926 157 YAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPE 236 (370)
T ss_pred HHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHH
Confidence 346688899999999999998 5999 799999999854 88999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeeecccccc----cCCCCCCC----CCCCCHHHHHHHHHHHHHHCCC-Cceeccccccccchh
Q psy8190 223 QRAELIFQLANLNPYPESVPINNLVQ----IKGTPLYG----SSILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGET 293 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P----~~gT~l~~----~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~ 293 (348)
|+++++..|++++ +++++|..|+| .++||++. .+..+..+.++++|++|++||+ .+|+++| ..++.+
T Consensus 237 drv~~l~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w--~~~G~~ 312 (370)
T PRK05926 237 DIVTHMSKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW--NYLGIE 312 (370)
T ss_pred HHHHHHHHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc--hhcCHH
Confidence 9999999999999 89999999999 67899864 3357889999999999999998 5788886 778888
Q ss_pred hHHHHHHhCccee---eeCCeeccCCCCC------chHHHHHHHHcCCCchhhhhH
Q psy8190 294 TQAFCFLAGANSI---FYGDKLLTTDNTK------TNDDSKLLKKLGINTRNIKIK 340 (348)
Q Consensus 294 ~~~~~l~~GAn~~---~~~~~~~~~~g~~------~~~~~~~i~~~G~~p~~~~~~ 340 (348)
..+.+|.+||||+ +.++++...+|.. .+++.++|+++|++|++|+-|
T Consensus 313 ~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~rd~~ 368 (370)
T PRK05926 313 VALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCLTNSK 368 (370)
T ss_pred HHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCceecCCC
Confidence 9999999999999 4566666666632 368899999999999999976
No 7
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=100.00 E-value=7.5e-51 Score=382.33 Aligned_cols=308 Identities=16% Similarity=0.233 Sum_probs=268.2
Q ss_pred hcccCCCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEE--EEEEeecCCCCCCCCcCCCCCCCCCCCcccccc
Q psy8190 22 SSSQSLIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKIL 98 (348)
Q Consensus 22 ~~~~~~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~--~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~ 98 (348)
+...++++|++|++.||+. ++.+|+..|+++|++++ |+.|+++ .+++. |++|+++|.||+|++.+.. ...|. +
T Consensus 4 ~~~~~~~ls~~e~~~L~~~~~~~~L~~~A~~vr~~~~-g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~~y~-l 79 (351)
T TIGR03700 4 KVEAGQRLSFEDGLFLYASDDLLTLGELAALVRERKH-GDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PGAYA-M 79 (351)
T ss_pred HHhCCCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHhc-CCeEEEeccCCccc-ccccccCCccCceeCCCCC-cccCC-C
Confidence 3467889999999999964 68999999999998877 9999999 56776 9999999999999986433 24675 8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHH
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLK 165 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk 165 (348)
++|||++.++.+.+.|+++|+|++| ..| ..+.+++.++++.|++. ++++++ +.|..++|.++.|+
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~G-~~p-~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVGG-LHP-NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecC-CCC-CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999987 445 45789999999999985 455554 25778889999999
Q ss_pred HhCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeee
Q psy8190 166 KVGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 166 ~aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+||++++.+ ++|+ ++++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+++++++..+++++ +++.+
T Consensus 158 eAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~--~~~~~ 235 (351)
T TIGR03700 158 EAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ--DETGG 235 (351)
T ss_pred HcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh--HhhCC
Confidence 999999985 8999 899999999976 678999999999999999999999999999999999999999999 78899
Q ss_pred ccccccc----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCccee---eeCCee
Q psy8190 243 INNLVQI----KGTPLYGS--SILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 243 ~~~l~P~----~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
|+.|+|. +||||.+. +++++.+.++++|++|+++|+ .+|+++| ..++++..+.+|.+||||+ +.++++
T Consensus 236 f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w--~~~~~~~~~~~L~~Gand~ggt~~~e~v 313 (351)
T TIGR03700 236 FQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYW--VMLGLKLAQVALAFGVNDLDGTVVEEKI 313 (351)
T ss_pred ceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc--cccCHHHHHHHHhcCCCCCCccCcccee
Confidence 9999998 59999876 789999999999999999999 6888885 6667888999999999998 445666
Q ss_pred ccCCCC------CchHHHHHHHHcCCCchhhhh
Q psy8190 313 LTTDNT------KTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 313 ~~~~g~------~~~~~~~~i~~~G~~p~~~~~ 339 (348)
...+|. +.+++.++|+++|++|++|+-
T Consensus 314 ~~~~g~~~~~~~~~~~l~~~i~~~g~~p~~r~~ 346 (351)
T TIGR03700 314 GHDAGAKSPQALSKDELVRLIRDAGRVPVERDT 346 (351)
T ss_pred eccccCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 555552 247899999999999999974
No 8
>PRK08508 biotin synthase; Provisional
Probab=100.00 E-value=2.6e-50 Score=366.97 Aligned_cols=273 Identities=36% Similarity=0.586 Sum_probs=249.3
Q ss_pred CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHH
Q psy8190 60 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMI 139 (348)
Q Consensus 60 ~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~ 139 (348)
|+|.+|++++++|++|+.+|.||++++.+....+.|+.+++|+|++.++++.+.|+.+|++++++..+.....+++.+++
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~ 81 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAA 81 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHH
Confidence 67999999999999999999999999866545567877899999999999999999999986544444456789999999
Q ss_pred HHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 140 CEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 140 ~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+.+++. ++.++++.|.+++|.++.|+++|++++++++||++++|+.+++++++++++++++.++++|+++++++|+|+
T Consensus 82 ~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl 161 (279)
T PRK08508 82 KAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL 161 (279)
T ss_pred HHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec
Confidence 999975 567778999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHH
Q psy8190 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAF 297 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~ 297 (348)
|||.+|+++++.++++++ ++++++++|.|.||||+.. +++++++.++++|++|+++|+..|++++||+.+..+.+..
T Consensus 162 GEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~ 238 (279)
T PRK08508 162 GESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238 (279)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHH
Confidence 999999999999999999 8999999999999999975 5689999999999999999999999999996555567889
Q ss_pred HHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchh
Q psy8190 298 CFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336 (348)
Q Consensus 298 ~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~ 336 (348)
+|.+|||+++.|+| +|+.|++.++|.+||+++|++|..
T Consensus 239 ~~~~g~n~~~~g~~-lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 239 IFEAGANAIVIGDY-LTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred HHhcCCcceeecCc-ccCCCCChHHHHHHHHHcCCCcCc
Confidence 99999999999996 599999999999999999999863
No 9
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00 E-value=1e-49 Score=374.05 Aligned_cols=304 Identities=20% Similarity=0.301 Sum_probs=260.6
Q ss_pred CCHHHHHHhhcC--ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHH
Q psy8190 29 WKLDEVINLFNL--PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 105 (348)
Q Consensus 29 ls~~e~~~Ll~~--~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 105 (348)
||++|++.||+. ++.+|++.|+.+|++++ |++|+++.+..++ |++|+++|.||+++... .....|. +++|+|++
T Consensus 1 ls~~e~~~ll~~~~~~~~L~~~A~~ir~~~~-g~~v~~~~~~~i~~T~~C~~~C~FC~~~~~~-~~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRRDIV-GDTVTYVVNRNINFTNVCYGGCGFCAFRKRK-GDADAYL-LSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHHhc-CCeEEEEeeeccccccccccCCccCCCccCC-CCCCccc-CCHHHHHH
Confidence 689999999964 57899999999988877 9999987655554 99999999999998753 2334575 89999999
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHHHhCCCee
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+++.+.+.|+++|+|+||. .| ..+.+++.++++.|++. ++++++ +.|.+++|.++.||+||++++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~-~p-~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i 155 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGI-HP-DLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHHCCCCEEEEEeCC-CC-CCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccc
Confidence 9999999999999999773 33 45789999999999985 566654 468889999999999999999
Q ss_pred ec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 173 NH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.. +.|+ ++++++.+++++ ++++|+++++.++++|+++++++|+|++||.+|+++++.++++++ ++..+|..|+|.
T Consensus 156 ~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~iP~ 233 (343)
T TIGR03551 156 PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFVPL 233 (343)
T ss_pred cCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEEec
Confidence 84 6788 689999999975 999999999999999999999999999999999999999999999 788889999986
Q ss_pred C----CCCCCCC----CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---eeCCeeccCCCC
Q psy8190 250 K----GTPLYGS----SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTTDNT 318 (348)
Q Consensus 250 ~----gT~l~~~----~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~ 318 (348)
| |||+++. +++++++.++++|++|+++|+..++++++|.++++..++.+|.+|||++ +.++++...+|.
T Consensus 234 ~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~ 313 (343)
T TIGR03551 234 PFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGA 313 (343)
T ss_pred cccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceecccccccCC
Confidence 6 9999742 4579999999999999999997666666678888887899999999998 345566555543
Q ss_pred C------chHHHHHHHHcCCCchhhhh
Q psy8190 319 K------TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 319 ~------~~~~~~~i~~~G~~p~~~~~ 339 (348)
. .+++.++|+++||+|++|+-
T Consensus 314 ~~~~~~~~~~~~~~i~~~g~~~~~r~~ 340 (343)
T TIGR03551 314 SHGEYLSPEELEAIIEDAGRIPKQRTT 340 (343)
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeecCC
Confidence 3 47999999999999999973
No 10
>PRK07360 FO synthase subunit 2; Reviewed
Probab=100.00 E-value=1.1e-49 Score=376.61 Aligned_cols=312 Identities=17% Similarity=0.267 Sum_probs=266.3
Q ss_pred hhcccCCCCCHHHHHHhhcC-C---hHHHHHHHHHHHHhhcCCCceEEEEE--EEeecCCCCCCCCcCCCCCCCCCCCcc
Q psy8190 21 ISSSQSLIWKLDEVINLFNL-P---FNDLLFRAQKVHRKYFDANEIELAVL--LSIKTGGCTEDCGYCPQSTHYNTEITA 94 (348)
Q Consensus 21 ~~~~~~~~ls~~e~~~Ll~~-~---~~~l~~~A~~~~~~~~~g~~v~~~~~--i~i~t~~C~~~C~fC~~~~~~~~~~~~ 94 (348)
.+...++++|++|++.||+. + +.+|+..|+++|+++| |++|+++.+ +++ |+.|+.+|.||+|++.. ....+
T Consensus 12 ~~~~~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~~~~~~~i~~-Tn~C~~~C~fC~~~~~~-~~~~~ 88 (371)
T PRK07360 12 ERARKGKDLSKEDALELLETTEPRRIFEILELADRLRKEQV-GDTVTYVVNRNINF-TNICEGHCGFCAFRRDE-GDHGA 88 (371)
T ss_pred HHHhcCCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-CCeEEEEeccCccc-chhhhcCCccCCcccCC-CCCCC
Confidence 34467899999999999976 3 6789999999998888 899998654 555 99999999999999863 34567
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHH
Q psy8190 95 TKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQA 161 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l 161 (348)
|. +++|||++.++.+.+.|+++|+|+|| ..|.....+++.++++.+++. ++.+++ +.|..+++.+
T Consensus 89 y~-ls~eeI~~~a~~a~~~G~~~i~l~~G-~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l 166 (371)
T PRK07360 89 FW-LTIAEILEKAAEAVKRGATEVCIQGG-LHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVL 166 (371)
T ss_pred ee-CCHHHHHHHHHHHHhCCCCEEEEccC-CCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHH
Confidence 85 89999999999999999999999977 556544589999999999974 566664 4688899999
Q ss_pred HHHHHhCCCeeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCC
Q psy8190 162 YRLKKVGLDYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 162 ~~Lk~aG~~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~ 238 (348)
+.|++||++++.- +.|. ++++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++++.++++++ +
T Consensus 167 ~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~--~ 244 (371)
T PRK07360 167 KALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQ--Q 244 (371)
T ss_pred HHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhc--h
Confidence 9999999999972 3444 467777888865 999999999999999999999999999999999999999999999 8
Q ss_pred Ceeeccccccc----CCCCCCCCC----CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---e
Q psy8190 239 ESVPINNLVQI----KGTPLYGSS----ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---F 307 (348)
Q Consensus 239 ~~i~~~~l~P~----~gT~l~~~~----~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~ 307 (348)
++.+|..|+|. +|||+++.. ++++.+.++++|++|+++|+..++++++|..++....+.+|.+|||++ +
T Consensus 245 ~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l~~Gan~~~~~~ 324 (371)
T PRK07360 245 ETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVALNCGANDLGGTL 324 (371)
T ss_pred hhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHHhcCCccCcCcC
Confidence 89999999985 499998643 357888899999999999996666667777787777888999999999 7
Q ss_pred eCCeeccCCC------CCchHHHHHHHHcCCCchhhhh
Q psy8190 308 YGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 308 ~~~~~~~~~g------~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
.++++.+.+| .+.+++.++|+++||+|++|+-
T Consensus 325 ~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~~~r~~ 362 (371)
T PRK07360 325 MEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRDT 362 (371)
T ss_pred cccceecccCCCCCCCCCHHHHHHHHHHcCCceeeecC
Confidence 7888766565 3568999999999999999974
No 11
>PRK08445 hypothetical protein; Provisional
Probab=100.00 E-value=2e-49 Score=370.55 Aligned_cols=303 Identities=17% Similarity=0.266 Sum_probs=255.3
Q ss_pred CCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEE---EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHH
Q psy8190 27 LIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAV---LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIES 102 (348)
Q Consensus 27 ~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~---~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 102 (348)
++||++|++.||+. |+.+|+..|+++|++++ |+.|.+++ +|++ |++|+++|.||+|++.++.. ..| .+++++
T Consensus 2 ~~ls~~e~l~Ll~~~~l~~L~~~A~~vr~~~~-g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~ee 77 (348)
T PRK08445 2 KRLSKEEALDLIKNAPLKELGEMALERKQELH-PEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEE 77 (348)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHH
Confidence 58999999999964 78999999999998888 67776544 4666 99999999999999865433 677 589999
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE----------ecCCCC-HHHHHHHHHhCC
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL----------TLGMLN-ENQAYRLKKVGL 169 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~----------~~g~l~-~e~l~~Lk~aG~ 169 (348)
|++.++++.+.|.++|+++||. + +..+.+++.++++.|++. .+.++. +.+.++ +|.++.|++||+
T Consensus 78 I~~~~~~a~~~g~~~i~~~gg~-~-~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl 155 (348)
T PRK08445 78 IDKKIEELLAIGGTQILFQGGV-H-PKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGL 155 (348)
T ss_pred HHHHHHHHHHcCCCEEEEecCC-C-CCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 9999999999999999999873 3 357899999999999985 355542 223344 899999999999
Q ss_pred Ceee-ccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 170 DYYN-HNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 170 ~~i~-~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+++. .|+|+ ++++++.+++ +.+.++|+++++.+|++|+++++++|+|++||.+++++++..+++++ +++.+|..|
T Consensus 156 ~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~f 233 (348)
T PRK08445 156 SSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRAF 233 (348)
T ss_pred CCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeEE
Confidence 9997 58999 7999999977 56999999999999999999999999999999999999999999999 666554444
Q ss_pred c----ccCCCCCCCC----CCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCccee---eeCCeecc
Q psy8190 247 V----QIKGTPLYGS----SILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLT 314 (348)
Q Consensus 247 ~----P~~gT~l~~~----~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~ 314 (348)
+ +.+|||++.. +++++++.++++|++|+++|+ .+|+++ |..++...++.+|.+||||+ +.++++..
T Consensus 234 i~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~--~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~ 311 (348)
T PRK08445 234 ILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSS--WVTQGSYIGQLALLFGANDLGSTMMEENVVK 311 (348)
T ss_pred eccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCC--CcccCHHHHHHHHhcCCccCccccccccchh
Confidence 3 3399999853 468999999999999999999 566655 46788888899999999999 55677777
Q ss_pred CCCCC----chHHHHHHHHcCCCchhhhh
Q psy8190 315 TDNTK----TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 315 ~~g~~----~~~~~~~i~~~G~~p~~~~~ 339 (348)
.+|.+ .+++.++|+++||+|++|+-
T Consensus 312 ~ag~~~~~~~~~~~~~i~~~g~~p~~r~t 340 (348)
T PRK08445 312 AAGASFRMNQAEMIELIKDIGEIPAKRNT 340 (348)
T ss_pred ccCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 77754 37889999999999999984
No 12
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=2.6e-49 Score=373.69 Aligned_cols=313 Identities=21% Similarity=0.281 Sum_probs=271.3
Q ss_pred hhhhhcccCCCCCHHHHHHhhcC----ChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCc
Q psy8190 18 NNAISSSQSLIWKLDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEIT 93 (348)
Q Consensus 18 ~~~~~~~~~~~ls~~e~~~Ll~~----~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 93 (348)
..+.+...++.||++|++.||+. ++.+|+..|+++|+++| |++|++++++++ |++|+++|.||+|+..+.. .
T Consensus 25 ~~~~~il~g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~~--~ 100 (371)
T PRK09240 25 ADVERALNKDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRF-GNTISLYTPLYL-SNYCANDCTYCGFSMSNKI--K 100 (371)
T ss_pred HHHHHHHhcCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHc-CCEEEEEeceEE-cccccCcCCcCCCCCCCCC--c
Confidence 34455577899999999999985 26788999999999888 899999999999 9999999999999876432 3
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy8190 94 ATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++ .++++||+++++.+.+.|+++|+|+|| .+|...+.+++.++++.+++....++++.+.++.+.++.|+++|+++++
T Consensus 101 ~~-~ls~eEI~~~a~~~~~~Gv~~i~lvgG-e~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 101 RK-TLDEEEIEREMAAIKKLGFEHILLLTG-EHEAKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGVT 178 (371)
T ss_pred cc-cCCHHHHHHHHHHHHhCCCCEEEEeeC-CCCCCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEEE
Confidence 43 689999999999999999999999997 5666678999999999999764456677889999999999999999999
Q ss_pred ccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCC----CCCeeecc
Q psy8190 174 HNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNP----YPESVPIN 244 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~----~~~~i~~~ 244 (348)
+++|| +++.|+.+++ +|++++++++++.++++|+. +++++|+|+||+.+|+.+++..+++|+. ...+|+|+
T Consensus 179 i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 258 (371)
T PRK09240 179 VYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFP 258 (371)
T ss_pred EEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecC
Confidence 99999 7999999974 78999999999999999995 9999999999999999999999998872 12479999
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchh---hHHHHHHhCcceeeeCCeecc-C----
Q psy8190 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGET---TQAFCFLAGANSIFYGDKLLT-T---- 315 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~-~l~~~---~~~~~l~~GAn~~~~~~~~~~-~---- 315 (348)
.|.|.+| |+.+.+++++.+++++++++|+++|+..|++++|++ .+++. .+...+.+| |+.+.|+|..+ .
T Consensus 259 ~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~y~~~~~~~~q 336 (371)
T PRK09240 259 RLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGGYADDHKELEQ 336 (371)
T ss_pred ccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCCcCCCCCCcCC
Confidence 9999999 999888999999999999999999999999999984 44332 234566775 88888997643 2
Q ss_pred ----CCCCchHHHHHHHHcCCCchhhh
Q psy8190 316 ----DNTKTNDDSKLLKKLGINTRNIK 338 (348)
Q Consensus 316 ----~g~~~~~~~~~i~~~G~~p~~~~ 338 (348)
+|++.+++.+||+++||+|+..+
T Consensus 337 f~~~~~r~~~~~~~~i~~~g~~~~~~~ 363 (371)
T PRK09240 337 FEISDDRSVEEVAAALRAKGLQPVWKD 363 (371)
T ss_pred ccCCCCCCHHHHHHHHHHCCCeeccch
Confidence 68999999999999999997654
No 13
>KOG2900|consensus
Probab=100.00 E-value=3.3e-50 Score=341.79 Aligned_cols=317 Identities=49% Similarity=0.854 Sum_probs=293.8
Q ss_pred hhcccCCCCCHHHHHHhhcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCH
Q psy8190 21 ISSSQSLIWKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSI 100 (348)
Q Consensus 21 ~~~~~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ 100 (348)
..-.+...+|++|+.++++.|+.+|...|+.+.|++++..+|..|.+++|+|+||..+|+||++++.++.+++.-+.+..
T Consensus 40 ~~~~prn~Wtr~eik~iYdtPLldL~f~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~ 119 (380)
T KOG2900|consen 40 SLDEPRNSWTRSEIKEIYDTPLLDLTFAAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKV 119 (380)
T ss_pred hccCCcccccHHHHHHHhcchHHHHHHHHHHHHhhhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhH
Confidence 33356888999999999999999999999999999998999999999999999999999999999988888777778899
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCc--ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++++++++.++..|-.+||++..+.+... ..+.++.++++.++..++++|+..|.++++..+.||+||+..++++++|
T Consensus 120 DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDT 199 (380)
T KOG2900|consen 120 DEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDT 199 (380)
T ss_pred HHHHHHHHHHHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccc
Confidence 99999999999999999999988654422 3567889999999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC--
Q psy8190 179 SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-- 256 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-- 256 (348)
+.|.|.++-...+++++++++..++++|+++|++.|+|+||..+|.+-.+..|..+..+|++++++.++|.+|||+.+
T Consensus 200 SREyYskvItTRtYDdRL~Ti~nvr~aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~ 279 (380)
T KOG2900|consen 200 SREYYSKVITTRTYDDRLQTIKNVREAGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEK 279 (380)
T ss_pred hhhhhcccceecchHHHHHHHHHHHHhcceecccccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhh
Confidence 999999999999999999999999999999999999999999999999999999998889999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCchh
Q psy8190 257 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRN 336 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~~ 336 (348)
..++..++++++++.+|+++|++.|++++||..+....+.+++.+|||+++.|+..+|+..-.-+++..|+...|++|.+
T Consensus 280 ~k~l~i~e~lR~IaTARIvMPKaiiRlaAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~ 359 (380)
T KOG2900|consen 280 SKKLQIDEILRTIATARIVMPKAIIRLAAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPME 359 (380)
T ss_pred cccccHHHHHHHHhhhheechHHHHHHhccccccchhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCc
Confidence 56788999999999999999999999999998888888899999999999999998888877889999999999999976
Q ss_pred h
Q psy8190 337 I 337 (348)
Q Consensus 337 ~ 337 (348)
-
T Consensus 360 ~ 360 (380)
T KOG2900|consen 360 A 360 (380)
T ss_pred c
Confidence 3
No 14
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=100.00 E-value=5.6e-49 Score=369.37 Aligned_cols=306 Identities=17% Similarity=0.250 Sum_probs=262.3
Q ss_pred CCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy8190 27 LIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 27 ~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
+++|++|++.||+. ++.+|+..|+++|+++|.|++|+++.+.+++ |++|+.+|.||++++... ....| .+++++|+
T Consensus 1 ~~l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~~-~~~~~-~ls~eei~ 78 (340)
T TIGR03699 1 ERLSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAPG-HPEGY-VLSVEEIL 78 (340)
T ss_pred CCCCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCCC-Ccccc-CCCHHHHH
Confidence 47999999999975 6899999999998877658999988765555 999999999999876432 11234 58999999
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEE-----------EEecCCCCHHHHHHHHHhCCCe
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LET-----------CLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i-----------~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
+.++.+.+.|+++|+|+||. .| ..+.+++.++++.+++.+ +++ +.+.|.++++.++.|+++|+++
T Consensus 79 ~~~~~~~~~G~~~i~l~gG~-~p-~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~ 156 (340)
T TIGR03699 79 QKIEELVAYGGTQILLQGGV-NP-DLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDS 156 (340)
T ss_pred HHHHHHHHcCCcEEEEecCC-CC-CCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCc
Confidence 99999999999999999873 33 467889999999999754 332 1245666799999999999999
Q ss_pred eec-cCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 172 YNH-NLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 172 i~~-g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.+ ++|+ ++++++.+++. .++++|+++++.++++|+++++++|+|+|||.+++++++.++++++ ++.++|..|+|
T Consensus 157 ~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~fIP 234 (340)
T TIGR03699 157 IPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAFIP 234 (340)
T ss_pred CCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEe
Confidence 995 7999 79999999875 5999999999999999999999999999999999999999999999 78877777777
Q ss_pred c----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---eeCCeeccCCCCCc-
Q psy8190 249 I----KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTTDNTKT- 320 (348)
Q Consensus 249 ~----~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~- 320 (348)
. +||||++.+++++++.++++|++|+++|+ .+++++||..++.+.++.+|.+|||++ +..+.+++++|.+.
T Consensus 235 ~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~ 313 (340)
T TIGR03699 235 WTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGATHR 313 (340)
T ss_pred ecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCCCC
Confidence 4 79999988889999999999999999998 667777888888788899999999993 44456778888887
Q ss_pred ---hHHHHHHHHcCCCchhhhh
Q psy8190 321 ---NDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 321 ---~~~~~~i~~~G~~p~~~~~ 339 (348)
+++.++|+++|++|++|+-
T Consensus 314 ~~~~~~~~~i~~~g~~~~~r~~ 335 (340)
T TIGR03699 314 ASREEIIRIIREAGFIPAQRDT 335 (340)
T ss_pred CCHHHHHHHHHHcCCCeeeecC
Confidence 9999999999999999973
No 15
>PRK05927 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-49 Score=367.53 Aligned_cols=307 Identities=17% Similarity=0.189 Sum_probs=261.5
Q ss_pred cCCCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHH
Q psy8190 25 QSLIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIES 102 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 102 (348)
.+++||++|++.|++. |+.+|+..|+++|+++|.|+.|+++.+.+++ ||.|+.+|.||+|++..+. ..+| .++++|
T Consensus 3 ~~~~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~Tn~C~~~C~fCaf~~~~~~-~~~y-~ls~ee 80 (350)
T PRK05927 3 LPARISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPHS-SDAY-LLSFDE 80 (350)
T ss_pred CccCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCccchhhhcCCccCCccCCCCC-cccc-ccCHHH
Confidence 4789999999999964 7899999999999887757999977665555 9999999999999985433 3567 599999
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEE-----------EEecCCCCHHHHHHHHHhCC
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLET-----------CLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i-----------~~~~g~l~~e~l~~Lk~aG~ 169 (348)
+++.++++.+.|+++|+|+|| .+| ..+.+++.++++.|++. ++.+ +.+.|.+++|.++.|++||+
T Consensus 81 i~~~a~~~~~~G~~~i~i~gG-~~p-~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl 158 (350)
T PRK05927 81 FRSLMQRYVSAGVKTVLLQGG-VHP-QLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQ 158 (350)
T ss_pred HHHHHHHHHHCCCCEEEEeCC-CCC-CCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCc
Confidence 999999999999999999977 555 47899999999999974 3543 33589999999999999999
Q ss_pred Ceeec-cCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 170 DYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 170 ~~i~~-g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+++.. ++|+ ++++.+.++|.+ +.++|+++++.||++|+++++++|||+|||.+|+++++..+++++ .+...|..|
T Consensus 159 ~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~~f 236 (350)
T PRK05927 159 RTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFYSF 236 (350)
T ss_pred ccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCeeee
Confidence 99998 8999 678888888766 689999999999999999999999999999999999999999999 455678888
Q ss_pred ccc----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCc-eeccccccccchhhHHHHHHhCcceee---eCCeeccCC
Q psy8190 247 VQI----KGTPLYGS--SILDPLEFIRTIAVARITMPTSR-IRMSAGRKEMGETTQAFCFLAGANSIF---YGDKLLTTD 316 (348)
Q Consensus 247 ~P~----~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~~~-i~~s~g~~~l~~~~~~~~l~~GAn~~~---~~~~~~~~~ 316 (348)
+|. ++||++.. +++++++.++++|++|+++|+.. ++.+ |..++.+..+.+|.+||||+. ..+++.+.+
T Consensus 237 Ip~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~i~~~--w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~a 314 (350)
T PRK05927 237 IPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDHIAAS--WFGEGKEEGAKGLHYGADDFGGTILDESVHKCT 314 (350)
T ss_pred eecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCcccCC--ccccCHHHHHHHHhCCCccccCCCccceeeccC
Confidence 886 78999754 26999999999999999999854 4444 566778888999999999993 445666666
Q ss_pred CCC----chHHHHHHHHcCCCchhhhh
Q psy8190 317 NTK----TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 317 g~~----~~~~~~~i~~~G~~p~~~~~ 339 (348)
|.+ .+++.++|+++||+|++|+-
T Consensus 315 g~~~~~~~~~l~~~i~~~G~~~~~R~~ 341 (350)
T PRK05927 315 GWDLQSSEEEICAMILSEGFIPVERNT 341 (350)
T ss_pred CCCCcCCHHHHHHHHHHcCCCeeeecC
Confidence 655 47889999999999999974
No 16
>PRK07094 biotin synthase; Provisional
Probab=100.00 E-value=3.7e-47 Score=354.97 Aligned_cols=272 Identities=23% Similarity=0.366 Sum_probs=247.7
Q ss_pred CCHHHHHHhhcCC-h---HHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy8190 29 WKLDEVINLFNLP-F---NDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 29 ls~~e~~~Ll~~~-~---~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
||++|++.||+.+ . .+|++.|+.+|++++ |++|++++++++ |++|+++|.||+++..+ ....+|+ +++++++
T Consensus 1 ~t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~ 76 (323)
T PRK07094 1 LTRDEILELLSNDDEEELKYLFKAADEVRKKYV-GDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEIL 76 (323)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHH
Confidence 6899999999863 2 359999999998888 899999999999 99999999999998753 2234664 7999999
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHH
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKL 182 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~ 182 (348)
++++.+.+.|++.|+|+||. ++ ..+.+++.++++.+++ .++.+++++|.++++.++.|+++|++++.+|+|| ++++
T Consensus 77 ~~~~~~~~~g~~~i~l~gG~-~~-~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 77 ECAKKAYELGYRTIVLQSGE-DP-YYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred HHHHHHHHCCCCEEEEecCC-CC-CCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 99999999999999999873 33 3467899999999998 5788888999999999999999999999999999 7999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCC
Q psy8190 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILD 261 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~ 261 (348)
++.+++++++++++++++.++++|+.+++++|+|+ |||.+++.++++++++++ ++.+++++|+|.||||+++.++++
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~~ 232 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGS 232 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCCC
Confidence 99999999999999999999999999999999999 999999999999999999 899999999999999999988899
Q ss_pred HHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeee
Q psy8190 262 PLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 262 ~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
.++.+++++++|+++|+.+|+.+++|..+++..++.+|.+|||++|.
T Consensus 233 ~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 233 LELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred HHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecC
Confidence 99999999999999999999888788888888889999999999975
No 17
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=100.00 E-value=1e-46 Score=348.13 Aligned_cols=292 Identities=50% Similarity=0.876 Sum_probs=253.0
Q ss_pred hcCChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCE
Q psy8190 38 FNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATR 117 (348)
Q Consensus 38 l~~~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~ 117 (348)
++.|+.+|++.|++++++.|.|+.|+++++++++|++|+++|.||+++..+......++.+++++++++++.+.+.|+++
T Consensus 2 ~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 81 (296)
T TIGR00433 2 FETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATR 81 (296)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCE
Confidence 44478899999999999877799999999999889999999999999876432223445689999999999988899999
Q ss_pred EEEeccCCCCCccc-HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHH
Q psy8190 118 FCMGAAWRELKDRD-LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRL 196 (348)
Q Consensus 118 i~l~gg~~~~~~~~-~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~ 196 (348)
|++++++..+.... .+++.++.+.+++.++.+.++.|.+++|.++.|+++|++++.+++|+++++++.+++++++++++
T Consensus 82 ~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~ 161 (296)
T TIGR00433 82 FCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRV 161 (296)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHH
Confidence 87755434443322 44556666666667888888999999999999999999999999997799999999999999999
Q ss_pred HHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q psy8190 197 NTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITM 276 (348)
Q Consensus 197 ~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~l 276 (348)
++++.++++|+.+++++|+|++||.+++.++++++.+++ ++.+++++++|.||||+++.++++.++++++++.+|+++
T Consensus 162 ~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~l 239 (296)
T TIGR00433 162 DTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARIIM 239 (296)
T ss_pred HHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999998 899999999999999999988999999999999999999
Q ss_pred CCCceecccccc-ccchhhHHHHHHhCcceeeeCCeeccCCCCCch-HHHHHHHHcCC
Q psy8190 277 PTSRIRMSAGRK-EMGETTQAFCFLAGANSIFYGDKLLTTDNTKTN-DDSKLLKKLGI 332 (348)
Q Consensus 277 p~~~i~~s~g~~-~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~-~~~~~i~~~G~ 332 (348)
|+..|++++++. .++...++.++.+|||.++.|+|+ |+.|++.. ++.+|++++||
T Consensus 240 p~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~-~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 240 PKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYL-TTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred CcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcc-cCCCCCCcHHHHHHHHHcCC
Confidence 999999887764 555444455999999999999865 88888876 99999999996
No 18
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=100.00 E-value=2e-47 Score=360.53 Aligned_cols=311 Identities=20% Similarity=0.263 Sum_probs=266.8
Q ss_pred hhhhhcccCCCCCHHHHHHhhcCC----hHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCc
Q psy8190 18 NNAISSSQSLIWKLDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEIT 93 (348)
Q Consensus 18 ~~~~~~~~~~~ls~~e~~~Ll~~~----~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 93 (348)
..+.+...++.||++|++.|++.+ +.+|+..|+++|+++| |++|+++.++++ |+.|+++|.||+|+..+. ..
T Consensus 24 ~~~~~~l~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~~~--~~ 99 (366)
T TIGR02351 24 ADVERALNKRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRF-GNTISLFTPLYL-SNYCSNKCVYCGFSMSNK--IK 99 (366)
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHc-CCEEEEEeeeeE-CccccCCCCcCCCCCCCC--Cc
Confidence 344555678999999999999762 6789999999998888 899999999998 999999999999987542 34
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy8190 94 ATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++ .++++||.+.++.+.+.|+++|+++|| ++|...+.+++.++++.+++....++++.+.++.+.++.|+++|+++++
T Consensus 100 ~~-~Ls~eEI~~~a~~~~~~Gv~~i~lvgG-e~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 100 RK-KLNEEEIEREIEAIKKSGFKEILLVTG-ESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVT 177 (366)
T ss_pred cC-cCCHHHHHHHHHHHHhCCCCEEEEeeC-CCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEE
Confidence 44 589999999999999999999999976 5666678999999999999864445556678999999999999999999
Q ss_pred ccCCC-CHHHHhccC---CCCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCC----CCCeeecc
Q psy8190 174 HNLDT-SPKLYGDII---STRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNP----YPESVPIN 244 (348)
Q Consensus 174 ~g~et-~~e~l~~i~---~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~----~~~~i~~~ 244 (348)
+++|| +++.|+.++ +.|++++++++++.++++|+. +++++|+|+|++.++..+++..++.|+. ...+|+++
T Consensus 178 i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 257 (366)
T TIGR02351 178 VYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVP 257 (366)
T ss_pred EEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 99999 699999988 678999999999999999997 9999999999999999998888888873 12689999
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccch---hhHHHHHHhCcceeeeCCeeccCCC---
Q psy8190 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGE---TTQAFCFLAGANSIFYGDKLLTTDN--- 317 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~-~l~~---~~~~~~l~~GAn~~~~~~~~~~~~g--- 317 (348)
.+.|.+| |+....+.++.+.+++++++|+++|+..|++++|++ .+++ ..+...+.+ +|+.+.|+|. ++.|
T Consensus 258 ~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~y~-~~~~~~~ 334 (366)
T TIGR02351 258 RLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGGYS-SEKKGLE 334 (366)
T ss_pred ccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeecc-CcccCCCCcC-CCCCCcC
Confidence 9999999 998888999999999999999999999999999883 4432 233334566 7887888855 6666
Q ss_pred -------CCchHHHHHHHHcCCCchhh
Q psy8190 318 -------TKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 318 -------~~~~~~~~~i~~~G~~p~~~ 337 (348)
++.+++.+||+++||+|+-.
T Consensus 335 qf~~~d~r~~~~~~~~i~~~g~~~~~~ 361 (366)
T TIGR02351 335 QFEISDERSVAEVEEDLRSKGLQPVWK 361 (366)
T ss_pred cccCCCCCCHHHHHHHHHHCCCeeccc
Confidence 78899999999999999743
No 19
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=4.2e-46 Score=378.79 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=265.1
Q ss_pred ccCCCCCHHHHHHhhcC---ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccC
Q psy8190 24 SQSLIWKLDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILS 99 (348)
Q Consensus 24 ~~~~~ls~~e~~~Ll~~---~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~ 99 (348)
..|++||.+|++.||+. ++.+|+..|+++|++++ |+.|+++.+.+++ ||.|+.+|.||+|++.. .....|. ++
T Consensus 482 ~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~-G~~Vt~vvn~~In~TN~C~~~C~FCafs~~~-~~~~~y~-Ls 558 (843)
T PRK09234 482 RDPAGLTDDEALALFTADGPALEAVCRLADDLRRDVV-GDDVTYVVNRNINFTNICYTGCRFCAFAQRK-TDADAYT-LS 558 (843)
T ss_pred hcCCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhc-CCeEEEEEeeceecCCCCCCCCcccccccCC-CCCCccc-CC
Confidence 46889999999999974 57899999999998887 9999987766655 99999999999999863 3446785 89
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-----------ecCCCCHHHHHHHHH
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKK 166 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~ 166 (348)
++||++.++++.+.|+++|+|+|| .+| ..+.+++.++++.||+. ++++++ +.|...+|.++.|++
T Consensus 559 ~eeI~~~a~ea~~~G~tev~i~gG-~~p-~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~Lke 636 (843)
T PRK09234 559 LDEVADRAWEAWVAGATEVCMQGG-IHP-ELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALRE 636 (843)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecC-CCC-CcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999999987 555 46789999999999985 566653 357888999999999
Q ss_pred hCCCeeecc-CCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 167 VGLDYYNHN-LDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 167 aG~~~i~~g-~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
||+++++.+ -|. ++++.+.++|++ +.++|+++++.+|++|+++++++|||++||.+|+++++..+++++ .+..+|
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq--~~tgGf 714 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQ--DRTGGF 714 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcC--cccCCe
Confidence 999999974 444 578888899855 899999999999999999999999999999999999999999999 788888
Q ss_pred ccccc----cCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee---eeCCee
Q psy8190 244 NNLVQ----IKGTPLY----GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 244 ~~l~P----~~gT~l~----~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
..|+| .++||++ ..+.++..+.++++|++|++||+..+++.++|.+++...++.+|.+||||+ ++++++
T Consensus 715 ~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~GaNDlgGtl~ee~i 794 (843)
T PRK09234 715 TEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGGANDLGGTLMEETI 794 (843)
T ss_pred eeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcCCcCccccccccee
Confidence 88888 5788885 236699999999999999999975545556678998888899999999999 556777
Q ss_pred ccCCCCC------chHHHHHHHHcCCCchhhhh
Q psy8190 313 LTTDNTK------TNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 313 ~~~~g~~------~~~~~~~i~~~G~~p~~~~~ 339 (348)
...+|+. .+++.++|+++||+|++|+-
T Consensus 795 ~~~aG~~~~~~~~~~~l~~~i~~aG~~p~~R~t 827 (843)
T PRK09234 795 SRMAGSEHGSAKTVAELEAIAEGAGRPARQRTT 827 (843)
T ss_pred eeccCCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 7666654 37889999999999999974
No 20
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=1.7e-45 Score=352.70 Aligned_cols=325 Identities=18% Similarity=0.311 Sum_probs=274.9
Q ss_pred ccccccccchHHHhhhhhc-ccCCCCCHHHHHHhhcCC----hHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCCCCC
Q psy8190 5 IIQSSKESNSIKKNNAISS-SQSLIWKLDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDC 79 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~ls~~e~~~Ll~~~----~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C 79 (348)
+|..++...+.+.+.+.+. ..+++||++|++.||+.+ +.+|+..|+++++++| |++|.+++++++ ||.|+++|
T Consensus 21 ~l~~~~~~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~-Gn~I~lfapLyi-SN~C~n~C 98 (469)
T PRK09613 21 LLEKAKNPDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIY-GNRIVLFAPLYI-SNYCVNNC 98 (469)
T ss_pred HHHhccCCCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHc-CCEEEEEEeccc-cCCCCCCC
Confidence 4555565666655555444 578999999999999862 5789999999998888 999999999999 99999999
Q ss_pred CcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----C--cEEEEec
Q psy8190 80 GYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----G--LETCLTL 153 (348)
Q Consensus 80 ~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~--~~i~~~~ 153 (348)
.||+|++.. ....+| .+++|||+++++.+.+.|+++|+|++| ++|+..+.+++.++++.|++. + ..++++.
T Consensus 99 ~YCgfs~~n-~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsG-e~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~ini 175 (469)
T PRK09613 99 VYCGFRRSN-KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAG-EDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNI 175 (469)
T ss_pred ccCCCccCC-CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeC-CCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEe
Confidence 999999864 345667 589999999999999999999999977 566677899999999999973 2 3688899
Q ss_pred CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHH
Q psy8190 154 GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 154 g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l 228 (348)
|.++.+.++.|+++|++++.+.+|| ++++|+.+++ +|++++++++++.++++|+. |++++|+|+|++.+|.+.++
T Consensus 176 g~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~ 255 (469)
T PRK09613 176 APTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLL 255 (469)
T ss_pred ecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHH
Confidence 9999999999999999999999999 8999999875 58999999999999999997 99999999999999999999
Q ss_pred HHHHhcCC----CCCeeecccccccCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCc
Q psy8190 229 FQLANLNP----YPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGA 303 (348)
Q Consensus 229 ~~l~~l~~----~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GA 303 (348)
..++.|+. .|++|+++.|.|.+||||.+.+ +++++++++++|++|+++|...|.+|+ |+. +.+....+..|+
T Consensus 256 ~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lSt-RE~--~~~r~~~~~~gv 332 (469)
T PRK09613 256 MHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILST-RES--AELRREVLELGV 332 (469)
T ss_pred HHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeec-CCC--HHHHHHHHhhcc
Confidence 88888821 2788999999999999997665 589999999999999999999999886 544 556777888898
Q ss_pred ceeeeCCe------ec-----------cCCCCCchHHHHHHHHcCCCchhh
Q psy8190 304 NSIFYGDK------LL-----------TTDNTKTNDDSKLLKKLGINTRNI 337 (348)
Q Consensus 304 n~~~~~~~------~~-----------~~~g~~~~~~~~~i~~~G~~p~~~ 337 (348)
..+..|.+ .. ..+.++.+++.+.|.+.||.|+-+
T Consensus 333 t~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p~~c 383 (469)
T PRK09613 333 SQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIPSFC 383 (469)
T ss_pred eeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 88854422 11 123455579999999999999754
No 21
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=8.4e-45 Score=369.28 Aligned_cols=312 Identities=23% Similarity=0.285 Sum_probs=266.7
Q ss_pred hhhcccCCCCCHHHHHHhhcC---ChHHHHHHHHHHHHhhcCCC-----ceEEEEEEEee-cCCCCCCCCcCCCCCCCCC
Q psy8190 20 AISSSQSLIWKLDEVINLFNL---PFNDLLFRAQKVHRKYFDAN-----EIELAVLLSIK-TGGCTEDCGYCPQSTHYNT 90 (348)
Q Consensus 20 ~~~~~~~~~ls~~e~~~Ll~~---~~~~l~~~A~~~~~~~~~g~-----~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~ 90 (348)
+.+...|++||.+|++.|++. ++.+|+..|+++|+++| |+ .|+|+..++++ ||.|.++|.||+|++..+.
T Consensus 18 l~k~~~g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~~-G~~~~~~~Vty~~n~~In~Tn~C~~~C~YCaF~~~~~~ 96 (843)
T PRK09234 18 LRRARDGVTLDVDEAAVLLTARGDDLADLCASAARVRDAGL-GAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVPGK 96 (843)
T ss_pred HHHHHcCCCCCHHHHHHHhcCCCccHHHHHHHHHHHHHHHc-CCcccCceEEEEeEEEecCCCCCCCCCCcCCCccCCCC
Confidence 344567999999999999853 57899999999999888 88 99999755555 9999999999999986432
Q ss_pred CCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---------------cHHHHHHHHHHHHh-cCcEEEEecC
Q psy8190 91 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---------------DLDNIENMICEVKK-IGLETCLTLG 154 (348)
Q Consensus 91 ~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---------------~~~~~~~l~~~i~~-~~~~i~~~~g 154 (348)
...| .+++|||++.++++.+.|+++++|++| ..|... .++++.++++.+++ .++..++|+|
T Consensus 97 -~~~~-~ls~eEIl~~a~~~~~~G~~e~l~t~G-~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G 173 (843)
T PRK09234 97 -LEAA-YLSPDEVLDIARAGAAAGCKEALFTLG-DRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPG 173 (843)
T ss_pred -Cccc-cCCHHHHHHHHHHHHHCCCCEEEEecC-CCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeC
Confidence 3445 599999999999999999999999998 455421 47999999999997 5888899999
Q ss_pred CCCHHHHHHHHHhCCCeeeccCCC-CHHHHh------ccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHH
Q psy8190 155 MLNENQAYRLKKVGLDYYNHNLDT-SPKLYG------DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAEL 227 (348)
Q Consensus 155 ~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~------~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~ 227 (348)
.++.+.++.|+++|++ +.+.+|| ++++|. .++|++.+++|+++++.++++|+++++++|||+|||.+|++++
T Consensus 174 ~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~GiGEt~edRve~ 252 (843)
T PRK09234 174 VMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAES 252 (843)
T ss_pred CCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEECCCCHHHHHHH
Confidence 9999999999999997 7889999 788874 4567788999999999999999999999999999999999999
Q ss_pred HHHHHhcCC---CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHHHhCc
Q psy8190 228 IFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGA 303 (348)
Q Consensus 228 l~~l~~l~~---~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GA 303 (348)
+..++++++ +++++.+++|.|.|||||.+.++++++++++++|++|++||+ .+|+++| ..++.+..+.+|.+||
T Consensus 253 L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~~~Iqa~~--~l~g~~~~~~~L~~Ga 330 (843)
T PRK09234 253 LFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPKMRIQAPP--NLVSGDECAALLGAGI 330 (843)
T ss_pred HHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceeeCcc--ccCCHHHHHHHHhcCC
Confidence 999999974 578899999999999999999999999999999999999976 5888876 5556777889999999
Q ss_pred ceeeeCCeeccC-------CCCCchHHHHHHHHcCCCchhhhh
Q psy8190 304 NSIFYGDKLLTT-------DNTKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 304 n~~~~~~~~~~~-------~g~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
||+ +|....+. ..++.+++.++++++||+|++|+-
T Consensus 331 nD~-GG~~~~~~d~~~p~~~~~~~~~l~~~~~~aG~~~~eR~t 372 (843)
T PRK09234 331 DDW-GGVSPLTPDHVNPERPWPQLDELAAVTAEAGFTLVERLT 372 (843)
T ss_pred Ccc-cchhhhHhhccCccCCCCCHHHHHHHHHHcCCCcccccC
Confidence 998 33222222 233458999999999999999974
No 22
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=4.9e-43 Score=326.42 Aligned_cols=314 Identities=19% Similarity=0.212 Sum_probs=258.3
Q ss_pred hhhcccCCCCCHHHHHHhhcC-ChHHHHHHHHHHHHhhcCCCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccc
Q psy8190 20 AISSSQSLIWKLDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKI 97 (348)
Q Consensus 20 ~~~~~~~~~ls~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~ 97 (348)
+.++.+++++|++|++.|++. +...|...|+.+|+....|+.|+|..+++++ ||.|.++|.||+|++.. ...++| .
T Consensus 12 ~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~-~~~~~y-~ 89 (370)
T COG1060 12 VEKALNGERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKP-GDPKAY-T 89 (370)
T ss_pred HHHHhccCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCcchhhcCCCCccccccCC-CCcccc-c
Confidence 455678999999999999986 5788999999998555558999999887777 99999999999999975 333677 5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE------------ecC-CCCHHHHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL------------TLG-MLNENQAYRL 164 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~------------~~g-~l~~e~l~~L 164 (348)
++++||.++++++.+.|+++++|+|| .+| ....+++.++++.+++....+++ +.+ ...+|.+++|
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG-~~p-~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~L 167 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGG-EHP-ELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRL 167 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecC-cCC-CcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHH
Confidence 99999999999999999999999999 455 45678999999999984223221 233 4445669999
Q ss_pred HHhCCCeeeccCCC--CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCC---CC
Q psy8190 165 KKVGLDYYNHNLDT--SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YP 238 (348)
Q Consensus 165 k~aG~~~i~~g~et--~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~---~~ 238 (348)
|+||++.+..+..+ ++++.+.+++ +.+++.|+++++.|+++|++.+++++||++|+.+|+++|+..++++|+ +.
T Consensus 168 k~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~ 247 (370)
T COG1060 168 KEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGF 247 (370)
T ss_pred HHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999987666 3666667775 459999999999999999999999999999999999999999999986 45
Q ss_pred CeeecccccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC-C-ceeccccccccchhhHHHHHHhCccee---eeCCee
Q psy8190 239 ESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAVARITMPT-S-RIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 239 ~~i~~~~l~P~~gT-~l~~~~~~~~~~~~~~~a~~R~~lp~-~-~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
.++.+.+|.|.+++ +....++++..++++++|++|+++++ . +++.+ |.+++....+.++.+||||+ ++.+++
T Consensus 248 ~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~--w~~~g~~~~~~~l~~GanD~ggt~~~E~v 325 (370)
T COG1060 248 QEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQAS--WLRDGVILAQAALLSGANDLGGTGYEEKV 325 (370)
T ss_pred EEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCc--ccccchHHHHHHHHhCcccCcCCCccccc
Confidence 56666777777777 66666789999999999999999995 3 35555 46777777899999999999 333555
Q ss_pred ccCCC------CCchHHHHHHHHcCCCchhhhh
Q psy8190 313 LTTDN------TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 313 ~~~~g------~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
.+.+| ++.+++.++|+++||+|++|+-
T Consensus 326 ~~~a~~~~~~~~~~eel~~~i~~aG~~p~~Rdt 358 (370)
T COG1060 326 NPAAGAFSGDWRSVEELAALIKEAGRIPVERDT 358 (370)
T ss_pred ccccccccCCCCCHHHHHHHHHHcCCCeeeecc
Confidence 55555 3458999999999999999974
No 23
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=100.00 E-value=2.7e-42 Score=319.50 Aligned_cols=271 Identities=18% Similarity=0.330 Sum_probs=225.7
Q ss_pred eEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHH
Q psy8190 62 IELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 62 v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
|+|..+++++ |++|+++|.||+++..+.. .+.| .+++|+|++.++.+.+.|+++|+|+|| ..+ ..+.+++.++++
T Consensus 1 ~~~~~n~~i~~T~~C~~~C~FC~~~~~~~~-~~~~-~ls~eeI~~~~~~~~~~G~~~i~l~gg-~~~-~~~~~~~~~i~~ 76 (309)
T TIGR00423 1 VTFVVNRNINFTNICVGKCKFCAFRAREKD-KDAY-VLSLEEILEKVKEAVAKGATEVCIQGG-LNP-QLDIEYYEELFR 76 (309)
T ss_pred CEEeceeeecCccccccCCccCCCccCCCC-CCcc-cCCHHHHHHHHHHHHHCCCCEEEEecC-CCC-CCCHHHHHHHHH
Confidence 3555555555 9999999999999986432 2345 589999999999999999999999977 344 457889999999
Q ss_pred HHHhc--CcEEEE-----------ecCCCCHHHHHHHHHhCCCeee-ccCCC-CHHHHhccCCCC-CHHHHHHHHHHHHH
Q psy8190 141 EVKKI--GLETCL-----------TLGMLNENQAYRLKKVGLDYYN-HNLDT-SPKLYGDIISTR-DYENRLNTLKNVRN 204 (348)
Q Consensus 141 ~i~~~--~~~i~~-----------~~g~l~~e~l~~Lk~aG~~~i~-~g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~ 204 (348)
.|++. ++.++. +.|.+++|.++.|++||++++. .++|+ ++++++.+++++ +.++|+++++.+++
T Consensus 77 ~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~ 156 (309)
T TIGR00423 77 AIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 156 (309)
T ss_pred HHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 99985 355542 3466779999999999999997 59999 799999998755 99999999999999
Q ss_pred cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc----CCCC-CCCC--CCCCHHHHHHHHHHHHHHCC
Q psy8190 205 VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI----KGTP-LYGS--SILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 205 ~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~----~gT~-l~~~--~~~~~~~~~~~~a~~R~~lp 277 (348)
+|+++++++|+|++||.+|+++++..+++++ ++..+|+.|+|. +||| +... +++++.+.++++|++|+++|
T Consensus 157 ~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 157 LGIPTTATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred cCCCceeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 788888888884 5888 7654 78999999999999999999
Q ss_pred CCceeccccccccchhhHHHHHHhCccee---eeCCeeccCCC------CCchHHHHHHHHcCCCchhhhh
Q psy8190 278 TSRIRMSAGRKEMGETTQAFCFLAGANSI---FYGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 278 ~~~i~~s~g~~~l~~~~~~~~l~~GAn~~---~~~~~~~~~~g------~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
+. .++.++|.+++++.++.+|.+|||++ +.++++.+.+| .+.+++.++|+++||+|++|+-
T Consensus 235 ~~-~~i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~ 304 (309)
T TIGR00423 235 NI-RNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDT 304 (309)
T ss_pred CC-ccceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCC
Confidence 52 22444567888888899999999998 44566766654 2347999999999999999973
No 24
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=100.00 E-value=2.9e-42 Score=320.50 Aligned_cols=264 Identities=23% Similarity=0.368 Sum_probs=220.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---------------c
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---------------D 131 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---------------~ 131 (348)
+|++ ||+|+.+|.||+|+.... ....| .+++++|+++++.+.+.|+++++++|| .+|... .
T Consensus 7 ~i~~-tn~C~~~C~fCaf~~~~g-~~~~~-~l~~eeI~~~a~~~~~~G~~ei~l~~G-~~p~~~~~~~~~~l~~~~~~~~ 82 (322)
T TIGR03550 7 FIPL-TRLCRNRCGYCTFRRPPG-ELEAA-LLSPEEVLEILRKGAAAGCTEALFTFG-EKPEERYPEAREWLAEMGYDST 82 (322)
T ss_pred Eecc-ccCcCCCCccCCccccCC-Ccccc-cCCHHHHHHHHHHHHHCCCCEEEEecC-CCccccHHHHHHHHHhcCCccH
Confidence 4566 999999999999998642 22344 599999999999999999999999988 445321 2
Q ss_pred HHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhcc----CCCCCHHHHHHHHHHHHHc
Q psy8190 132 LDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDI----ISTRDYENRLNTLKNVRNV 205 (348)
Q Consensus 132 ~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i----~~~~~~~~~~~~i~~~~~~ 205 (348)
.+++.++++.+++. ++..++++|.++++.++.|+++|++ +.+++|| ++.+++.+ ++++++++|+++++.++++
T Consensus 83 ~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~ 161 (322)
T TIGR03550 83 LEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRL 161 (322)
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 47888888988864 7778899999999999999999986 5888999 57765544 4556789999999999999
Q ss_pred CCeeeEeEeeecCCCHHHHHHHHHHHHhcCC---CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cce
Q psy8190 206 GINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRI 281 (348)
Q Consensus 206 G~~i~~~~i~Glget~e~~~~~l~~l~~l~~---~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i 281 (348)
|+++++++|||+|||.+|+++++..++++++ ++..+.+.+|.|.||||+++.++++..+.++++|++|+++|+ .+|
T Consensus 162 Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I 241 (322)
T TIGR03550 162 KIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISI 241 (322)
T ss_pred CCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCee
Confidence 9999999999999999999999999999984 346777899999999999988889999999999999999975 688
Q ss_pred eccccccccchhhHHHHHHhCccee-----eeCCeeccCCC--CCchHHHHHHHHcCCCchhhhh
Q psy8190 282 RMSAGRKEMGETTQAFCFLAGANSI-----FYGDKLLTTDN--TKTNDDSKLLKKLGINTRNIKI 339 (348)
Q Consensus 282 ~~s~g~~~l~~~~~~~~l~~GAn~~-----~~~~~~~~~~g--~~~~~~~~~i~~~G~~p~~~~~ 339 (348)
+++| +++...++.+|.+||||+ +.+++. ++.+ .+.+++.++|+++||+|++|+-
T Consensus 242 ~~~~---~l~~~~~~~~L~~Gand~~gt~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~p~~R~t 302 (322)
T TIGR03550 242 QVPP---NLNREDYRLLLDAGIDDWGGVSPVTPDHV-NPEAPWPEIDELARATEEAGFTLKERLP 302 (322)
T ss_pred ecCC---ccChHHHHHHHhcCCccccCcccCchhhc-CCCCCCCCHHHHHHHHHHcCCCcccccC
Confidence 8885 555546899999999995 334544 3234 4578999999999999999975
No 25
>PRK06267 hypothetical protein; Provisional
Probab=100.00 E-value=4e-40 Score=308.91 Aligned_cols=273 Identities=18% Similarity=0.274 Sum_probs=230.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEEEEEeecCCCC--CCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhCCCCE
Q psy8190 41 PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCT--EDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSDGATR 117 (348)
Q Consensus 41 ~~~~l~~~A~~~~~~~~~g~~v~~~~~i~i~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~G~~~ 117 (348)
|+.+|++.|+++|+++| |++|++++++++ |++|+ ++|.||++++..+. ..+.+..+++++|+++++.+.+.|++.
T Consensus 5 ~~~~L~~~A~~ir~~~f-G~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~ 82 (350)
T PRK06267 5 EILENSIKAFKLTEKHH-GNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKL 82 (350)
T ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCE
Confidence 57889999999999888 999999999998 99999 99999999985321 112344689999999999999999998
Q ss_pred EEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHH
Q psy8190 118 FCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENR 195 (348)
Q Consensus 118 i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~ 195 (348)
++++|| ..+ ..+.+.++++.++.. +..++++.|.++.+.+..++.+|+ .+++|| ++++++.++++++++++
T Consensus 83 ~~lsgG-~~~---~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~ 155 (350)
T PRK06267 83 EFISGG-YGY---TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKI 155 (350)
T ss_pred EEEecC-CCC---CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHH
Confidence 888877 333 346677777777653 456778899999988888877776 358999 69999999999999999
Q ss_pred HHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8190 196 LNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 196 ~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
+++++.++++|+.+++++|+|+||+.+|+.++++++++++ ++.+++++|+|.||||+.+.++++++++++++|++|++
T Consensus 156 ~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~ 233 (350)
T PRK06267 156 KEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLN 233 (350)
T ss_pred HHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCCCceeccccccccchhhHHHHHHhCccee----eeCCeeccCCCCCchHHHHHH
Q psy8190 276 MPTSRIRMSAGRKEMGETTQAFCFLAGANSI----FYGDKLLTTDNTKTNDDSKLL 327 (348)
Q Consensus 276 lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~----~~~~~~~~~~g~~~~~~~~~i 327 (348)
+|+..| .+++|.......+. ++.+|||++ +.|.| +|+.|++.+++++.-
T Consensus 234 lP~~~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~y-lt~~g~~~~~~~~~~ 286 (350)
T PRK06267 234 FPKIKI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSMY-GTKEGKRVENEIRWT 286 (350)
T ss_pred CCCCCc-chhhHhHhcchhhH-HhhcCcceeeccchhccC-cccCCCCHHHHHHHh
Confidence 999888 44556433334445 677999999 66774 588898887765543
No 26
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=100.00 E-value=9.5e-39 Score=299.60 Aligned_cols=273 Identities=22% Similarity=0.321 Sum_probs=220.6
Q ss_pred CCceEEEEEEEee-cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-c-----
Q psy8190 59 ANEIELAVLLSIK-TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR-D----- 131 (348)
Q Consensus 59 g~~v~~~~~i~i~-t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-~----- 131 (348)
|+.|+|..+.+++ ||+|+.+|.||+|+.... .++.+++|+|+++++++.+.|+++|+|+||. +|... +
T Consensus 5 ~~~vt~~~~~~i~~Tn~C~~~C~fC~~~~~~~----~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~-~p~~~~~~~~~~ 79 (336)
T PRK06245 5 SKIVTYSRNVFIPLTYECRNRCGYCTFRRDPG----QPSLLSPEEVKEILRRGADAGCTEALFTFGE-VPDESYERIKEQ 79 (336)
T ss_pred CCeeEeecceeeeccccccCCCccCCCcCCCC----ccCcCCHHHHHHHHHHHHHCCCCEEEEecCC-CCccchhhhhhh
Confidence 8899998766555 999999999999987432 2235899999999999999999999999983 33221 1
Q ss_pred -----HHHHHHHHHH----HHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhcc---CCCCCHHHHHHH
Q psy8190 132 -----LDNIENMICE----VKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDI---ISTRDYENRLNT 198 (348)
Q Consensus 132 -----~~~~~~l~~~----i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i---~~~~~~~~~~~~ 198 (348)
...+.++++. +.+.+...+++++.++++.++.|+++|+. +.+.+|| ++.+++.+ ++++++++++++
T Consensus 80 ~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~ 158 (336)
T PRK06245 80 LAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLET 158 (336)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHH
Confidence 1223333433 33345666789999999999999999864 6777899 67887544 677899999999
Q ss_pred HHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCC---CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8190 199 LKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 199 i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~---~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
++.+++.|+++++++|+|+|||.+++.+++..++++++ +++.+.+++|+|.+|||+...++++.++.+++++++|++
T Consensus 159 i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~ 238 (336)
T PRK06245 159 IENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLI 238 (336)
T ss_pred HHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999974 257889999999999999888889999999999999999
Q ss_pred CCC-CceeccccccccchhhHHHHHHhCccee-----eeCCeeccC-CCCCchHHHHHHHHcCCCchhhhhH
Q psy8190 276 MPT-SRIRMSAGRKEMGETTQAFCFLAGANSI-----FYGDKLLTT-DNTKTNDDSKLLKKLGINTRNIKIK 340 (348)
Q Consensus 276 lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~-----~~~~~~~~~-~g~~~~~~~~~i~~~G~~p~~~~~~ 340 (348)
+|+ ..|+++ + +++...++.+|.+|||++ ..++++.+. .+++.+++.++|+++|++|++|+--
T Consensus 239 l~~~i~i~~~--~-~~~~~~~~~~L~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~~ 307 (336)
T PRK06245 239 LPPDISIQVP--P-NLNRDTGLLLLDAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAGWPLKERLPV 307 (336)
T ss_pred CCCCceEecC--C-ccchHHHHHHHhcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcCCCcccccCc
Confidence 976 345544 3 677777888999999999 334555332 2456799999999999999999854
No 27
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.97 E-value=3.8e-30 Score=241.52 Aligned_cols=240 Identities=11% Similarity=0.115 Sum_probs=191.9
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCC-CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.|.| |+|+.+|.||+|.+..... ...|.....+++..+++......+++|+|+|| +|+..+.+.+.++++.+++.
T Consensus 10 YiHi--PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGG--TPs~L~~~~l~~ll~~i~~~ 85 (353)
T PRK05904 10 YIHI--PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGG--TPNCLNDQLLDILLSTIKPY 85 (353)
T ss_pred EEEe--CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCC--ccccCCHHHHHHHHHHHHHh
Confidence 3555 9999999999998742211 22344345566666665443345788999988 57778889999999988863
Q ss_pred -----CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec-
Q psy8190 146 -----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL- 217 (348)
Q Consensus 146 -----~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl- 217 (348)
.+.+.++|..+++|.++.|+++|+++|++|+|| ++++++.+++.++.++..++++.++++|+. +++++|+|+
T Consensus 86 ~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 86 VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred cCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 344556899999999999999999999999999 799999999999999999999999999996 999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCc-----ee-cc--cc--
Q psy8190 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVARITMPTSR-----IR-MS--AG-- 286 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a~~R~~lp~~~-----i~-~s--~g-- 286 (348)
|||.+++.++++++.+++ |++++++.+.|.|||+++... .++++...+++..++..+.+.. |. .+ +|
T Consensus 166 gqt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~ 243 (353)
T PRK05904 166 ILKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYI 243 (353)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCcc
Confidence 999999999999999999 999999999999999998753 3677788889988888876532 21 11 12
Q ss_pred -ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 287 -RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 287 -~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+||+. ....++++++||.+.+.+.++
T Consensus 244 ~~hn~~yw~~~~ylg~G~gA~s~~~~~r~ 272 (353)
T PRK05904 244 SKHNLAYWRTKDWAAIGWGAHGFENNIEY 272 (353)
T ss_pred ccchHhHhCCCCEEEEcCCcCcccCCeEE
Confidence 23332 346788999999999766555
No 28
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.97 E-value=2.8e-29 Score=239.97 Aligned_cols=236 Identities=16% Similarity=0.218 Sum_probs=187.5
Q ss_pred EeecCCCCCCCCcCCCCCCCCCC---------CccccccCHHHHHHHHHHHHh--CCCCEEEEeccCCCCCcccHHHHHH
Q psy8190 69 SIKTGGCTEDCGYCPQSTHYNTE---------ITATKILSIESVITAAQKAKS--DGATRFCMGAAWRELKDRDLDNIEN 137 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~---------~~~~~~~~~eei~~~~~~~~~--~G~~~i~l~gg~~~~~~~~~~~~~~ 137 (348)
++.-++|+.+|.||+|+...... ..+| .+.+.++++.... .++++|+|+|| +|+..+.+.+.+
T Consensus 14 YiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~~~~i~~iy~GGG--Tps~l~~~~l~~ 87 (400)
T PRK07379 14 YIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEY----VEVLCQEIAITPSFGQPLQTVFFGGG--TPSLLSVEQLER 87 (400)
T ss_pred EEEeccccCcCCCCCCccccccccccccccchHHHH----HHHHHHHHHHhhccCCceeEEEECCC--ccccCCHHHHHH
Confidence 34459999999999997532111 0112 3455665554322 35788999988 566678899999
Q ss_pred HHHHHHhc-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-
Q psy8190 138 MICEVKKI-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN- 208 (348)
Q Consensus 138 l~~~i~~~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~- 208 (348)
+++.+++. +.+ +.++|+.++.+.++.|+++|++++++|+|| ++++++.+++.|+.++..++++.++++|+.
T Consensus 88 ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~ 167 (400)
T PRK07379 88 ILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIEN 167 (400)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 99998863 234 446789999999999999999999999999 899999999999999999999999999997
Q ss_pred eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc-
Q psy8190 209 ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR- 280 (348)
Q Consensus 209 i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~- 280 (348)
+++++|+|+ |||.+++.++++.+.+++ |++|+++.|.|.||||++.. .+++.++..+++..++..|....
T Consensus 168 v~~dlI~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy 245 (400)
T PRK07379 168 FSLDLISGLPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY 245 (400)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 899999999 999999999999999999 99999999999999998752 45788999999999998886642
Q ss_pred ee--cc----cc---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 281 IR--MS----AG---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 281 i~--~s----~g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+ ++ +| +||+. ....++|+++||.+.+.+.++
T Consensus 246 ~~yeisnfa~~g~~~~hn~~yw~~~~ylG~G~gA~s~~~~~r~ 288 (400)
T PRK07379 246 EHYEISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRF 288 (400)
T ss_pred ceeeeeheECCChHHHHHHHHhcCCcEEEEcCCcceecCCEEE
Confidence 11 11 22 34332 345688999999998766544
No 29
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=5.5e-29 Score=235.79 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=184.1
Q ss_pred eecCCCCCCCCcCCCCCCCCC--CCccccccCHHHHHHH-HHHHH----hCCCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy8190 70 IKTGGCTEDCGYCPQSTHYNT--EITATKILSIESVITA-AQKAK----SDGATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~--~~~~~~~~~~eei~~~-~~~~~----~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
+.-++|+.+|.||+|.+.... .+.+| .+.++++ ++... ...++.|+|+|| +|+..+.+.+.++++.+
T Consensus 11 iHIPFC~~~C~yC~f~~~~~~~~~~~~y----~~~l~~E~~~~~~~~~~~~~i~~iy~GGG--TPs~l~~~~l~~ll~~i 84 (370)
T PRK06294 11 IHIPFCTKKCHYCSFYTIPYKEESVSLY----CNAVLKEGLKKLAPLRCSHFIDTVFFGGG--TPSLVPPALIQDILKTL 84 (370)
T ss_pred EEeCCccCcCCCCcCcccCCCccCHHHH----HHHHHHHHHHHhhhhccCCceeEEEECCC--ccccCCHHHHHHHHHHH
Confidence 334999999999999874211 11123 2333333 22221 134778999888 57778889999999999
Q ss_pred Hhc---CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec
Q psy8190 143 KKI---GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL 217 (348)
Q Consensus 143 ~~~---~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl 217 (348)
++. .+.+.++|+.++++.++.|+++|++++++|+|| ++++++.++|.|+.++..++++.++++|+. +++++|+|+
T Consensus 85 ~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~Gl 164 (370)
T PRK06294 85 EAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGL 164 (370)
T ss_pred HhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 763 455567899999999999999999999999999 899999999999999999999999999995 999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc---eecc---
Q psy8190 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR---IRMS--- 284 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~---i~~s--- 284 (348)
|||.+++.++++.+.+++ |++++++++.|.||||++.. ..++.++...++..++..|.... ..++
T Consensus 165 Pgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeis~fa 242 (370)
T PRK06294 165 PTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTRYELASYA 242 (370)
T ss_pred CCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCeeeeeeee
Confidence 999999999999999999 99999999999999998752 24677888899999888776532 1111
Q ss_pred -cc---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 285 -AG---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 -~g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+| +||+. ....+.|+++||.+.+.|.++
T Consensus 243 ~~~~~~~hN~~yw~~~~~lg~G~gA~s~~~~~r~ 276 (370)
T PRK06294 243 KPQAQSKHNTYYWTDRPFLGLGVSASQYLHGIRS 276 (370)
T ss_pred CCCchhhhhhhhccCCCEEEEcCCcceecCCEEE
Confidence 21 24322 345678999999998766544
No 30
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.96 E-value=4.1e-29 Score=236.37 Aligned_cols=235 Identities=15% Similarity=0.171 Sum_probs=183.0
Q ss_pred eecCCCCCCCCcCCCCCCCCCC--CccccccCHHHHHHHHHHH-HhCC---CCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy8190 70 IKTGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKA-KSDG---ATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~-~~~G---~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
+.-|+|+.+|.||+|++..... ...| .+.+.++++.. ...| +..|+|+|| +|+..+.+.+.++++.++
T Consensus 5 iHiPFC~~~C~yC~f~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~v~~i~~GGG--tPs~l~~~~l~~ll~~i~ 78 (360)
T TIGR00539 5 IHIPFCENKCGYCDFNSYENKSGPKEEY----TQALCQDLKHALSQTDQEPLESIFIGGG--TPNTLSVEAFERLFESIY 78 (360)
T ss_pred EEeCCCcCcCCCCCCcccCcCccCHHHH----HHHHHHHHHHHHHhcCCCcccEEEeCCC--chhcCCHHHHHHHHHHHH
Confidence 3349999999999998752211 1223 34444444332 2233 788999988 466667788888888886
Q ss_pred hc-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEe
Q psy8190 144 KI-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGI 214 (348)
Q Consensus 144 ~~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i 214 (348)
+. +.+ +.++|+.++++.++.|+++|+++|++|+|| ++++++.+++.|++++..++++.++++|+ .+++++|
T Consensus 79 ~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 79 QHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred HhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEecc
Confidence 42 334 456789999999999999999999999999 79999999999999999999999999999 5899999
Q ss_pred eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCce-e--cc----
Q psy8190 215 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS--SILDPLEFIRTIAVARITMPTSRI-R--MS---- 284 (348)
Q Consensus 215 ~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~~~i-~--~s---- 284 (348)
+|+ |||.+++.++++++.+++ +++++++++.|.||||++.. ..++.++..+++..++..+..... + ++
T Consensus 159 ~GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~ 236 (360)
T TIGR00539 159 YGLPLQTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQYEVSNYAK 236 (360)
T ss_pred CCCCCCCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCceeehhhhcC
Confidence 999 999999999999999999 99999999999999999864 357788889999988887765321 1 11
Q ss_pred cc---cccc--chhhHHHHHHhCcceeeeCCee
Q psy8190 285 AG---RKEM--GETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 ~g---~~~l--~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+| +||. ....++.++++||.+.+.+.++
T Consensus 237 ~~~~~~hn~~yw~~~~~lg~G~~A~s~~~~~~~ 269 (360)
T TIGR00539 237 AGYQVKHNLAYWGAKDYLGCGAGAHGCVANERF 269 (360)
T ss_pred CCHHHHHHHHhcCCCCEEEEcCCccccCCCeEE
Confidence 22 2332 2445688999999998766544
No 31
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=5.3e-29 Score=236.83 Aligned_cols=232 Identities=10% Similarity=0.138 Sum_probs=186.6
Q ss_pred EeecCCCCCCCCcCCCCCCCCCCC--ccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy8190 69 SIKTGGCTEDCGYCPQSTHYNTEI--TATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~~--~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
++.-|+|+.+|.||+|++...... .+| .+.+.++++...+ ..+.+|+|+|| +|+..+.+.+.++++.+
T Consensus 8 YiHIPFC~~kC~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~i~tiy~GGG--TPs~l~~~~L~~ll~~i 81 (380)
T PRK09057 8 YVHWPFCLAKCPYCDFNSHVRHAIDQARF----AAAFLRELATEAARTGPRTLTSIFFGGG--TPSLMQPETVAALLDAI 81 (380)
T ss_pred EEEeCCcCCcCCCCCCcccCcCcCCHHHH----HHHHHHHHHHHHHHcCCCCcCeEEeCCC--ccccCCHHHHHHHHHHH
Confidence 334599999999999987532111 123 4566666554332 35788999988 57778889999999999
Q ss_pred Hhc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe
Q psy8190 143 KKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 214 (348)
Q Consensus 143 ~~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i 214 (348)
++. .+.+.++|+.++.+.++.|+++|++++++|+|| ++++++.++|.|+.++..++++.+++++..+++++|
T Consensus 82 ~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli 161 (380)
T PRK09057 82 ARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLI 161 (380)
T ss_pred HHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEee
Confidence 872 244567899999999999999999999999999 899999999999999999999999999889999999
Q ss_pred eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCce-e--cc
Q psy8190 215 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTSRI-R--MS 284 (348)
Q Consensus 215 ~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~~~i-~--~s 284 (348)
+|+ |||.+++.+++..+.+++ |++++++++.|.||||++. ...++.++..+++..++.+|..... + ++
T Consensus 162 ~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s 239 (380)
T PRK09057 162 YARPGQTLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEIS 239 (380)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhH
Confidence 999 999999999999999998 9999999999999999875 2357888899999999988865422 1 11
Q ss_pred ----cc---ccccc--hhhHHHHHHhCcceeee
Q psy8190 285 ----AG---RKEMG--ETTQAFCFLAGANSIFY 308 (348)
Q Consensus 285 ----~g---~~~l~--~~~~~~~l~~GAn~~~~ 308 (348)
+| +||+. ....+.|+++||.+.+.
T Consensus 240 ~~a~~g~~~~hn~~yw~~~~~lG~G~gA~s~~~ 272 (380)
T PRK09057 240 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLT 272 (380)
T ss_pred HHcCCCchhhhHHHHhCCCCEEEEcCCcccccc
Confidence 22 23322 44577899999999863
No 32
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=5.6e-29 Score=236.65 Aligned_cols=232 Identities=13% Similarity=0.155 Sum_probs=184.3
Q ss_pred eecCCCCCCCCcCCCCCCCCCC--CccccccCHHHHHHHHHHHH----hCCCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy8190 70 IKTGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKAK----SDGATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~----~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
+.-|+|+.+|.||+|.+..... ...| .+.+.++++... ...+++|+|+|| +|+..+.+.+.++++.++
T Consensus 16 iHiPFC~~~C~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~i~tiy~GGG--TPs~l~~~~l~~ll~~i~ 89 (390)
T PRK06582 16 IHWPFCLSKCPYCDFNSHVASTIDHNQW----LKSYEKEIEYFKDIIQNKYIKSIFFGGG--TPSLMNPVIVEGIINKIS 89 (390)
T ss_pred EEeCCCcCcCCCCCCeeccCCCCCHHHH----HHHHHHHHHHHHHHccCCceeEEEECCC--ccccCCHHHHHHHHHHHH
Confidence 3349999999999998753221 1233 233444443322 234788999988 577778889999999888
Q ss_pred hc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee
Q psy8190 144 KI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII 215 (348)
Q Consensus 144 ~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~ 215 (348)
+. .+.+.++|+.++.+.++.|+++|++|+++|+|| ++++++.++|.|+.++..++++.+++++..+++++|+
T Consensus 90 ~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~ 169 (390)
T PRK06582 90 NLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIY 169 (390)
T ss_pred HhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeec
Confidence 62 244556899999999999999999999999999 7999999999999999999999999997789999999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCc-----ee-
Q psy8190 216 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTSR-----IR- 282 (348)
Q Consensus 216 Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~~~-----i~- 282 (348)
|+ |||.+++.++++.+.+++ |++|+++++.+.|||||+. ...++.++..+++..++..|.... |.
T Consensus 170 GlPgqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~yeis~ 247 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISN 247 (390)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCceeecee
Confidence 99 999999999999999998 9999999999999999974 246788999999999998876532 21
Q ss_pred cc-cc---ccccc--hhhHHHHHHhCcceeeeC
Q psy8190 283 MS-AG---RKEMG--ETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 283 ~s-~g---~~~l~--~~~~~~~l~~GAn~~~~~ 309 (348)
.+ +| +||+. ....+.|+++||.+.+.+
T Consensus 248 fa~~g~~~~hn~~yw~~~~~lg~G~gA~s~~~~ 280 (390)
T PRK06582 248 YAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIE 280 (390)
T ss_pred eeCCChhhhhHHHHhcCCcEEEECCCeeecccC
Confidence 11 22 24322 345678999999998653
No 33
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=9.6e-28 Score=233.14 Aligned_cols=247 Identities=19% Similarity=0.215 Sum_probs=187.0
Q ss_pred cccCCCCCHHHHHHhhcCC------hHHHHHHHHHHHHhhcC---CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCc
Q psy8190 23 SSQSLIWKLDEVINLFNLP------FNDLLFRAQKVHRKYFD---ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEIT 93 (348)
Q Consensus 23 ~~~~~~ls~~e~~~Ll~~~------~~~l~~~A~~~~~~~~~---g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~ 93 (348)
....+++|.+|+.+.|..+ -.+|+...+...+.... .+.+ . +++.-++||.+|.||+|++.......
T Consensus 116 ~~~~~g~~~~~~~~~~~~~y~~~~~k~~l~~~~~~~~~~~~~~~~~~~~--s--LYihIPFC~~~C~YCsf~s~~~~~~~ 191 (488)
T PRK08207 116 KLLDEGLSKEEIHKELKEEYLISEEKAKLLLEIAKRELSFLLYRDKNEV--S--IYIGIPFCPTRCLYCSFPSYPIKGYK 191 (488)
T ss_pred HHHHcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccCCCCce--E--EEEecCCCCCcCCCCCCccccCCCCc
Confidence 3456788999998876532 23455444444444442 2323 2 33434999999999999875211101
Q ss_pred cccccCHHHHHHHHHHHH----h--CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----Cc-EEEE---ecCCCCH
Q psy8190 94 ATKILSIESVITAAQKAK----S--DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GL-ETCL---TLGMLNE 158 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~----~--~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~-~i~~---~~g~l~~ 158 (348)
.....-.+.++++++... . .++..|+|+|| +|+..+.+.+.++++.+++. ++ ++++ +|+.+++
T Consensus 192 ~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGG--TPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~ 269 (488)
T PRK08207 192 GLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGG--TPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITE 269 (488)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCC--CccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCH
Confidence 100012344455544432 1 24678999988 46667788899999888753 22 5554 5668999
Q ss_pred HHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEeeec-CCCHHHHHHHHHHHHhcC
Q psy8190 159 NQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL-SESRDQRAELIFQLANLN 235 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i~Gl-get~e~~~~~l~~l~~l~ 235 (348)
+.++.|+++|++++++|+|| ++++++.+++.|+++++.++++.++++|+ .+++++|+|+ |||.+++.++++++.+++
T Consensus 270 e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~ 349 (488)
T PRK08207 270 EKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLN 349 (488)
T ss_pred HHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999 79999999999999999999999999999 7999999999 999999999999999999
Q ss_pred CCCCeeecccccccCCCCCCC----CCCCCHHHHHHHHHHHHHHCC
Q psy8190 236 PYPESVPINNLVQIKGTPLYG----SSILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 236 ~~~~~i~~~~l~P~~gT~l~~----~~~~~~~~~~~~~a~~R~~lp 277 (348)
|++++++.+.|.|||+++. ...++.++..+|+..++..+.
T Consensus 350 --pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~ 393 (488)
T PRK08207 350 --PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAK 393 (488)
T ss_pred --cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999974 245788889999999887654
No 34
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=1.3e-28 Score=238.49 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=188.2
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHH
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
.|+| ++|+.+|.||+|...... ........+.++++++...+ ..++.|+|+|| +|+..+.+.+.++++
T Consensus 65 YiHI--PFC~~~C~yC~f~~~~~~--~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGG--TPs~L~~~~l~~ll~ 138 (449)
T PRK09058 65 YIHI--PFCRTHCTFCGFFQNAWN--PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGG--TPTALSAEDLARLIT 138 (449)
T ss_pred EEEe--CCcCCcCCCCCCcCcCCc--hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCC--ccccCCHHHHHHHHH
Confidence 3455 999999999998764211 11112345677777665443 24778999988 577778899999999
Q ss_pred HHHhc-----CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC-CeeeE
Q psy8190 141 EVKKI-----GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICC 211 (348)
Q Consensus 141 ~i~~~-----~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G-~~i~~ 211 (348)
.+++. ++++ .+++..+++|.++.|+++|++++++|+|| ++++++.++|.|+.+++.++++.++++| ..+++
T Consensus 139 ~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~ 218 (449)
T PRK09058 139 ALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVC 218 (449)
T ss_pred HHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEE
Confidence 99873 3344 45688999999999999999999999999 8999999999999999999999999999 57999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCC-CHHHHHHHHHHHHHHCCCCc-ee
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSIL-DPLEFIRTIAVARITMPTSR-IR 282 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~-~~~~~~~~~a~~R~~lp~~~-i~ 282 (348)
++|||+ |||.+++.++++++.+++ +++++++.|.|.|||+++. .+++ +.++..+|+..++..|.... .+
T Consensus 219 DlI~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~ 296 (449)
T PRK09058 219 DLIFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQ 296 (449)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 999999 999999999999999999 9999999999999999875 2345 88999999999999887642 22
Q ss_pred --cc----cc----ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 283 --MS----AG----RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 283 --~s----~g----~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ ++ ++|.. ....++++++||.+.+.|.++
T Consensus 297 yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~ 338 (449)
T PRK09058 297 LSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGYSY 338 (449)
T ss_pred EeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCEEE
Confidence 11 22 23321 345677899999998765444
No 35
>PRK12928 lipoyl synthase; Provisional
Probab=99.96 E-value=1.5e-27 Score=217.32 Aligned_cols=229 Identities=18% Similarity=0.267 Sum_probs=185.9
Q ss_pred HHHHHHhhcC-ChHHHHHHHHHHHHhhcC-CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHH
Q psy8190 31 LDEVINLFNL-PFNDLLFRAQKVHRKYFD-ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 108 (348)
Q Consensus 31 ~~e~~~Ll~~-~~~~l~~~A~~~~~~~~~-g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~ 108 (348)
..++..|+.. ++..+.+.|+..+...++ ++.+++. .+ |++|+.+|+||+++.. . ++ .++++++++.++
T Consensus 28 ~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~tfv---~i-s~gC~~~C~FCa~~~g--~---~~-~~~~eei~~~a~ 97 (290)
T PRK12928 28 LETVQRLVKQRRLHTICEEARCPNRGECYAQGTATFL---IM-GSICTRRCAFCQVDKG--R---PM-PLDPDEPERVAE 97 (290)
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCcccccCCCCEEEEE---Ee-cccccCcCCCCCccCC--C---CC-CCCHHHHHHHHH
Confidence 6778888865 799999999998776553 5656554 44 9999999999999872 1 34 389999999999
Q ss_pred HHHhCCCCEEEEeccCCCC-CcccHHHHHHHHHHHHhc--CcEEEE-ecCCC--CHHHHHHHHHhCCCeeeccCCCCHHH
Q psy8190 109 KAKSDGATRFCMGAAWREL-KDRDLDNIENMICEVKKI--GLETCL-TLGML--NENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~-~~~~~~~~~~l~~~i~~~--~~~i~~-~~g~l--~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
.+...|+++|+|+|+..+. +..+.+++.++++.|++. ++.+.+ ++..+ ..+.++.|+++|.+.+.+++||++++
T Consensus 98 ~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~v 177 (290)
T PRK12928 98 AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRL 177 (290)
T ss_pred HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHH
Confidence 9999999999999874321 224467899999999985 344443 34444 57889999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcC--CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc--cCCCCCCCCC
Q psy8190 183 YGDIISTRDYENRLNTLKNVRNVG--INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ--IKGTPLYGSS 258 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P--~~gT~l~~~~ 258 (348)
++.|+++++++++++.++.+++.| +.+++++|+|+|||.+|+.++++++++++ ++.+++++|.+ ....|...+-
T Consensus 178 l~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~~~~ 255 (290)
T PRK12928 178 QKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQRYW 255 (290)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCceeecc
Confidence 999999999999999999999999 99999999999999999999999999999 99999988765 3456666655
Q ss_pred CCCHHHHHHHHHH
Q psy8190 259 ILDPLEFIRTIAV 271 (348)
Q Consensus 259 ~~~~~~~~~~~a~ 271 (348)
.|...+.++.++.
T Consensus 256 ~~~~f~~~~~~~~ 268 (290)
T PRK12928 256 TPEEFEALGQIAR 268 (290)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555554
No 36
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=3.7e-28 Score=231.29 Aligned_cols=238 Identities=21% Similarity=0.297 Sum_probs=185.3
Q ss_pred EeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--
Q psy8190 69 SIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-- 145 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-- 145 (348)
+++-++|+.+|.||+++...... ......++.++++++.... .+++.|+|+|| +|+..+.+.+..+++.++..
T Consensus 7 YiHiPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGG--tps~l~~~~l~~L~~~i~~~~~ 82 (374)
T PRK05799 7 YIHIPFCKQKCLYCDFPSYSGKE--DLMMEYIKALSKEIRNSTKNKKIKSIFIGGG--TPTYLSLEALEILKETIKKLNK 82 (374)
T ss_pred EEEeCCccCCCCCCCCCcccCCc--chHHHHHHHHHHHHHhhcCCCceeEEEECCC--cccCCCHHHHHHHHHHHHhCCC
Confidence 33449999999999998753221 1211236777777765432 35788999888 45555667777777777653
Q ss_pred --CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec-C
Q psy8190 146 --GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-S 218 (348)
Q Consensus 146 --~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl-g 218 (348)
++++ .++++.++++.++.|+++|++++++|+|| ++++++.+++.|+.++..++++.++++|+. +++++|+|+ |
T Consensus 83 ~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 83 KEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred CCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 2344 46788999999999999999999999999 799999999999999999999999999995 899999999 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCc-ee--cc----c
Q psy8190 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTSR-IR--MS----A 285 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~~~-i~--~s----~ 285 (348)
||.+++.++++++.+++ +++++++.+.|.||||++. ...++.++...++..++..|.... .+ ++ +
T Consensus 163 qt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~ye~~~fa~~ 240 (374)
T PRK05799 163 QTLEDWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISNFAKP 240 (374)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCcEEeeeeeECC
Confidence 99999999999999998 9999999999999999864 245788889999999988876542 12 11 2
Q ss_pred c---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 286 G---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 286 g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
| +||+. ....+.|+++||.+.+.|.++
T Consensus 241 ~~~~~hn~~yw~~~~~~g~G~gA~s~~~~~~~ 272 (374)
T PRK05799 241 GKECRHNLVYWDLEEYIGCGAGAHSYVNGKRY 272 (374)
T ss_pred CcchhhHHHHhcCCCEEEEcCCccccCCCEEE
Confidence 2 23321 234577899999998765443
No 37
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=1.5e-28 Score=231.22 Aligned_cols=233 Identities=12% Similarity=0.146 Sum_probs=178.1
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-
Q psy8190 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 71 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~- 145 (348)
.-|+|+.+|.||+|++..... ......++.++++++...+ .++..|+|+|| +|+..+.+.+.++++.+++.
T Consensus 6 HiPFC~~~C~yC~f~~~~~~~--~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGG--TPs~l~~~~l~~ll~~i~~~~ 81 (350)
T PRK08446 6 HIPFCESKCGYCAFNSYENKH--DLKKEYMQALCLDLKFELEQFTDEKIESVFIGGG--TPSTVSAKFYEPIFEIISPYL 81 (350)
T ss_pred EeCCccCcCCCCCCcCcCCCc--ccHHHHHHHHHHHHHHHHhhccCCceeEEEECCC--ccccCCHHHHHHHHHHHHHhc
Confidence 349999999999998752111 1111245666666654322 36888999988 46667888888888888762
Q ss_pred --CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEeeec-C
Q psy8190 146 --GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL-S 218 (348)
Q Consensus 146 --~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i~Gl-g 218 (348)
+.+ +.++|+.++++.++.|+++|++++++|+|| ++++++.++|.|+.++..++++.++++|+ .+++++|+|+ |
T Consensus 82 ~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 82 SKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 334 456788999999999999999999999999 79999999999999999999999999999 4899999999 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCc-ee--c---ccc---c
Q psy8190 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS--ILDPLEFIRTIAVARITMPTSR-IR--M---SAG---R 287 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~--~~~~~~~~~~~a~~R~~lp~~~-i~--~---s~g---~ 287 (348)
||.+++.++++++.+++ |++++++.+.|.||||++... .++.+ +++..+...+.... .+ + +.| +
T Consensus 162 qt~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~~~~~~~~~~---~~~~~~~~~l~~~Gy~~yeis~fa~~~~~~ 236 (350)
T PRK08446 162 DNKKLLKEELKLAKELP--INHLSAYSLTIEENTPFFEKNHKKKDDE---NLAKFFIEQLEELGFKQYEISNFGKNYQCK 236 (350)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEeccceecCCChhHHhhhcCCCHH---HHHHHHHHHHHHCCCcEEEeehhhCcchhh
Confidence 99999999999999999 999999999999999997632 23333 35556665554432 11 1 111 2
Q ss_pred cccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 288 KEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 288 ~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
||+. ....+.|+++||.+.+.+.++
T Consensus 237 hn~~yw~~~~~lg~G~gA~s~~~~~~~ 263 (350)
T PRK08446 237 HNLGYWQGKDYLGCGAGAVGFVANKRF 263 (350)
T ss_pred hHHHHhCCCCEEEEcCCcccccCCeEE
Confidence 4432 345678999999998765443
No 38
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.96 E-value=3.6e-28 Score=231.26 Aligned_cols=239 Identities=16% Similarity=0.211 Sum_probs=185.7
Q ss_pred eecCCCCCCCCcCCCCCCCCCCCc--cccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy8190 70 IKTGGCTEDCGYCPQSTHYNTEIT--ATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~~~--~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
+.-++|+.+|.||+|++....... .....-.+.+.++++...+ ..++.|+|+|| +|+..+.+.+.++++.
T Consensus 7 iHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGG--TPs~l~~~~l~~ll~~ 84 (375)
T PRK05628 7 VHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGG--TPSLLGAEGLARVLDA 84 (375)
T ss_pred EEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCC--ccccCCHHHHHHHHHH
Confidence 334999999999999764321100 0001125667777665443 23678999888 5666778889999988
Q ss_pred HHhc-----CcEEE--EecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEe
Q psy8190 142 VKKI-----GLETC--LTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCG 212 (348)
Q Consensus 142 i~~~-----~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~ 212 (348)
+++. +++++ ++++.++++.++.|+++|+++|++|+|| ++++++.+++.++.++..++++.++++|+. ++.+
T Consensus 85 i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~d 164 (375)
T PRK05628 85 VRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLD 164 (375)
T ss_pred HHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 8762 23444 5788999999999999999999999999 899999999999999999999999999997 9999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc---ee
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR---IR 282 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~---i~ 282 (348)
+|+|+ |||.+++.++++++.+++ |+++.++++.+.||||++.. +.++.++...++..++.++.... ..
T Consensus 165 li~GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~~ye 242 (375)
T PRK05628 165 LIYGTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDWYE 242 (375)
T ss_pred EeccCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCCeee
Confidence 99999 999999999999999999 99999999999999999752 35677778889998888775532 11
Q ss_pred cc----cc---ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 283 MS----AG---RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 283 ~s----~g---~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ +| +||+. ....+.++++||.+.+.|.++
T Consensus 243 ~s~fa~~~~~~~hn~~yw~~~~~lg~G~gA~s~~~~~~~ 281 (375)
T PRK05628 243 VSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGGVRW 281 (375)
T ss_pred eccccCCCcccccchhhcCCCCEEEEccCcccccCCEEE
Confidence 11 11 24432 345778999999998766443
No 39
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.96 E-value=8.3e-28 Score=228.99 Aligned_cols=235 Identities=15% Similarity=0.186 Sum_probs=183.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--- 145 (348)
-++|+.+|.||+|++..... ......++.++++++.+... +++.|+|+|| +|+..+.+.+.++++.+++.
T Consensus 8 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGG--tpt~l~~~~l~~ll~~i~~~~~~ 83 (377)
T PRK08599 8 IPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGG--TPTALSAEQLERLLTAIHRNLPL 83 (377)
T ss_pred eCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCC--CcccCCHHHHHHHHHHHHHhCCC
Confidence 48999999999998742111 11123467777777655443 5777888877 45556778999999988873
Q ss_pred ----CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeec-C
Q psy8190 146 ----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-S 218 (348)
Q Consensus 146 ----~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Gl-g 218 (348)
.+.+.++++.++.+.++.|+++|++++++|+|| ++++++.++++++.+++.++++.++++|+. ++.++|+|+ |
T Consensus 84 ~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPg 163 (377)
T PRK08599 84 SGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPG 163 (377)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCC
Confidence 133456888999999999999999999999999 799999999999999999999999999996 789999999 9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCc-ee--cc----c
Q psy8190 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPTSR-IR--MS----A 285 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~~~~~~~~~a~~R~~lp~~~-i~--~s----~ 285 (348)
||.+++.++++++.+++ +++++++++.|.|||+++.. +.++.+...+++..+...+.... .+ ++ +
T Consensus 164 qt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~~~~~~~fa~~ 241 (377)
T PRK08599 164 QTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEISNFAKP 241 (377)
T ss_pred CCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCcEeeeeeeeCC
Confidence 99999999999999999 99999999999999998742 34677788888888887775432 12 11 2
Q ss_pred cc---ccc--chhhHHHHHHhCcceeeeCCee
Q psy8190 286 GR---KEM--GETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 286 g~---~~l--~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|. ||. .....+.++++||.+.+.+.++
T Consensus 242 ~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~~~ 273 (377)
T PRK08599 242 GFESRHNLTYWNNEEYYGFGAGASGYVNGVRY 273 (377)
T ss_pred ChHHHHHHHHhcCCcEEEEccCcccccCCEEE
Confidence 21 222 1345677899999998755443
No 40
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.95 E-value=2.7e-27 Score=224.84 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=182.5
Q ss_pred EeecCCCCCCCCcCCCCCCCCCC---CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 69 SIKTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
++.-++|+.+|.||+|.+..... ..+|.....+||...+......++.+|+|+|| +|+..+.+.+.++++.+++.
T Consensus 10 YiHiPFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGG--tPs~l~~~~l~~ll~~l~~~ 87 (378)
T PRK05660 10 YIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGG--TPSLFSAEAIQRLLDGVRAR 87 (378)
T ss_pred EEEeCCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCC--ccccCCHHHHHHHHHHHHHh
Confidence 33349999999999998742111 11233223333332222222246889999988 56677889999999999872
Q ss_pred -----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeee
Q psy8190 146 -----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIG 216 (348)
Q Consensus 146 -----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~G 216 (348)
+.+ +.++|+.++.+.++.|+++|+++|++|+|| ++++++.+++.|+.++.+++++.++++|+. +++++|+|
T Consensus 88 ~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~G 167 (378)
T PRK05660 88 LPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHG 167 (378)
T ss_pred CCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC
Confidence 334 456789999999999999999999999999 799999999999999999999999999995 79999999
Q ss_pred c-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCc-ee--cc----cc
Q psy8190 217 L-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS--SILDPLEFIRTIAVARITMPTSR-IR--MS----AG 286 (348)
Q Consensus 217 l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~--~~~~~~~~~~~~a~~R~~lp~~~-i~--~s----~g 286 (348)
+ |||.+++.++++.+.+++ |++++++++.|.|||+++.. ..++.++...++..+...|.... .+ ++ +|
T Consensus 168 lpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa~~~ 245 (378)
T PRK05660 168 LPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYAKPG 245 (378)
T ss_pred CCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccccCCC
Confidence 9 999999999999999999 99999999999999999864 34677888999999988876542 11 11 22
Q ss_pred ---ccccc--hhhHHHHHHhCcceeee
Q psy8190 287 ---RKEMG--ETTQAFCFLAGANSIFY 308 (348)
Q Consensus 287 ---~~~l~--~~~~~~~l~~GAn~~~~ 308 (348)
+||.. ....+.++++||.+.+.
T Consensus 246 ~~~~hn~~~w~~~~~lg~G~gA~s~~~ 272 (378)
T PRK05660 246 YQCQHNLNYWRFGDYLGIGCGAHGKLT 272 (378)
T ss_pred hhHHHHHHHhcCCCEEEEcCCcccccc
Confidence 23321 23457788999988763
No 41
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.95 E-value=1.4e-27 Score=228.06 Aligned_cols=232 Identities=10% Similarity=0.146 Sum_probs=183.3
Q ss_pred EeecCCCCCCCCcCCCCCCCCCC-----CccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHH
Q psy8190 69 SIKTGGCTEDCGYCPQSTHYNTE-----ITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMI 139 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~-----~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~ 139 (348)
++.-|+|+.+|.||+|++..... ..+| .+.+.++++.... ..+++|+|+|| +|+..+.+.+.+++
T Consensus 23 YiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y----~~~l~~ei~~~~~~~~~~~i~siy~GGG--TPs~L~~~~L~~ll 96 (394)
T PRK08898 23 YVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAY----LDALRADLEQALPLVWGRQVHTVFIGGG--TPSLLSAAGLDRLL 96 (394)
T ss_pred EEEeCCccCcCCCCCCcccccCCCCccCHHHH----HHHHHHHHHHHHHhccCCceeEEEECCC--CcCCCCHHHHHHHH
Confidence 33459999999999998753221 1123 4666666654322 24778999988 57778889999999
Q ss_pred HHHHhc-------CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE
Q psy8190 140 CEVKKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 140 ~~i~~~-------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
+.+++. .+.+.++|+.++.+.++.|+++|++++++|+|| ++++++.+++.|+.++..++++.+++.+..+++
T Consensus 97 ~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~ 176 (394)
T PRK08898 97 SDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNL 176 (394)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 999863 234456789999999999999999999999999 899999999999999999999999998778999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCc-----ee-
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS--ILDPLEFIRTIAVARITMPTSR-----IR- 282 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~--~~~~~~~~~~~a~~R~~lp~~~-----i~- 282 (348)
++|+|+ |||.+++.++++.+.+++ |++|+++.|.|.||||++... .++.+...+++..+...|.... +.
T Consensus 177 dlI~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~~~ 254 (394)
T PRK08898 177 DLMYALPGQTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYAHYEVSA 254 (394)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCchhcccc
Confidence 999999 999999999999999999 999999999999999998643 4677788889888888775432 11
Q ss_pred cc-cc---ccccc--hhhHHHHHHhCcceeee
Q psy8190 283 MS-AG---RKEMG--ETTQAFCFLAGANSIFY 308 (348)
Q Consensus 283 ~s-~g---~~~l~--~~~~~~~l~~GAn~~~~ 308 (348)
.+ +| +||.. ....+.|+++||.+.+.
T Consensus 255 fa~~~~~~~hn~~~w~~~~~lg~G~gA~s~l~ 286 (394)
T PRK08898 255 YAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLS 286 (394)
T ss_pred ccCCCccchhHHHHhCCCCEEEECCCeeeeec
Confidence 11 22 23221 23456789999998864
No 42
>PRK05481 lipoyl synthase; Provisional
Probab=99.95 E-value=2.9e-26 Score=209.44 Aligned_cols=230 Identities=20% Similarity=0.270 Sum_probs=182.2
Q ss_pred CHHHHHHhhcC-ChHHHHHHHHHHHH--hhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHH
Q psy8190 30 KLDEVINLFNL-PFNDLLFRAQKVHR--KYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITA 106 (348)
Q Consensus 30 s~~e~~~Ll~~-~~~~l~~~A~~~~~--~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 106 (348)
...|++.|+.. |+..|++.|+.+++ .+. |+.+++. .+ |++|+++|+||.++... . +.+++++|+++
T Consensus 20 ~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~-~~~~~fi---~i-s~GC~~~C~FC~i~~~r--~----~s~~~eeI~~e 88 (289)
T PRK05481 20 EYTEIKKLLRELGLHTVCEEASCPNIGECWS-RGTATFM---IL-GDICTRRCPFCDVATGR--P----LPLDPDEPERV 88 (289)
T ss_pred hHHHHHHHHHhCChHHHHHhhCCCcchhccC-CCeEEEE---Ee-cccccCCCCCceeCCCC--C----CCCCHHHHHHH
Confidence 47889999874 89999999999977 444 6666554 46 99999999999998742 1 23789999999
Q ss_pred HHHHHhCCCCEEEEeccCCCC-CcccHHHHHHHHHHHHhc--CcEEEEe-cC-CCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy8190 107 AQKAKSDGATRFCMGAAWREL-KDRDLDNIENMICEVKKI--GLETCLT-LG-MLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~-~~~~~~~~~~l~~~i~~~--~~~i~~~-~g-~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
++.+.+.|+++|+|+||..+. +....+++.++++.|++. ++.+.+- +. ....+.+..|+++|.+.+.+++|++++
T Consensus 89 a~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~ 168 (289)
T PRK05481 89 AEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPR 168 (289)
T ss_pred HHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHH
Confidence 999999999999999984321 122457899999999873 3444332 22 234589999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-CCCCCC
Q psy8190 182 LYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLYGSS 258 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-~l~~~~ 258 (348)
+++.|+++++++++++.++.++++ |+.+++++|+|+|||.+|+.+++.++++++ ++.+.+++|.| |.- .+.-..
T Consensus 169 vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~-pa~k~~~v~~ 245 (289)
T PRK05481 169 LYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ-PSRKHLPVER 245 (289)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC-CccccCCCCC
Confidence 999999999999999999999999 999999999999999999999999999999 99999999998 332 221112
Q ss_pred CCCHHHHHHHHHHHH
Q psy8190 259 ILDPLEFIRTIAVAR 273 (348)
Q Consensus 259 ~~~~~~~~~~~a~~R 273 (348)
....++...+..++.
T Consensus 246 ~~k~~r~~~l~~~~~ 260 (289)
T PRK05481 246 YVTPEEFDEYKEIAL 260 (289)
T ss_pred cCCHHHHHHHHHHHH
Confidence 244444444444444
No 43
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.95 E-value=1.6e-26 Score=223.10 Aligned_cols=251 Identities=14% Similarity=0.156 Sum_probs=191.5
Q ss_pred HHHHHhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC----CCCEEEEeccCC
Q psy8190 50 QKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----GATRFCMGAAWR 125 (348)
Q Consensus 50 ~~~~~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----G~~~i~l~gg~~ 125 (348)
.++....+ +..+.+ .|+| ++|+.+|.||++....... ........+.++++++...+. .+..++|+||
T Consensus 29 ~~~~~~~~-~~~~~l--YvHI--PFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGG-- 100 (430)
T PRK08208 29 SEVWEREY-EDALSL--YIHI--PFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGG-- 100 (430)
T ss_pred HHHhccCC-CCceEE--EEEe--CCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCC--
Confidence 44444444 454433 3444 9999999999988753211 111112356677776654422 3678899877
Q ss_pred CCCcccHHHHHHHHHHHHhc------CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHH
Q psy8190 126 ELKDRDLDNIENMICEVKKI------GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRL 196 (348)
Q Consensus 126 ~~~~~~~~~~~~l~~~i~~~------~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~ 196 (348)
+|+..+.+.+.++++.+++. ++++ .+++..++++.++.|+++|+++|++|+|| ++++++.++++++.++..
T Consensus 101 TPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~ 180 (430)
T PRK08208 101 TPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVH 180 (430)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHH
Confidence 46667788888888888752 2334 46788999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHcCCe-eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 197 NTLKNVRNVGIN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 197 ~~i~~~~~~G~~-i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
++++.++++|+. +++++|+|+ |||.+++.++++++.+++ +++++++++.|.|||+++....++.++..+|+..++.
T Consensus 181 ~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~ 258 (430)
T PRK08208 181 QALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARD 258 (430)
T ss_pred HHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHH
Confidence 999999999996 689999999 999999999999999999 9999999999999999998777788999999999998
Q ss_pred HCCCCc-ee--cc----ccc---cccc---hhhHHHHHHhCcceeeeCC
Q psy8190 275 TMPTSR-IR--MS----AGR---KEMG---ETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 275 ~lp~~~-i~--~s----~g~---~~l~---~~~~~~~l~~GAn~~~~~~ 310 (348)
.|.... .+ ++ .+. ++.. ...+++|+++||.+.+.+.
T Consensus 259 ~L~~~Gy~~yei~~far~~~~~~~~~~~~~~~~~~lG~G~gA~s~~~~~ 307 (430)
T PRK08208 259 LLLEAGYTQTSMRMFRRNDAPDKGAPAYSCQTDGMLGLGCGARSYTGNL 307 (430)
T ss_pred HHHHcCCeEEeecceecCCcccCCCCccccCCCCEEEecCCeeecCCCC
Confidence 876542 11 11 111 1111 2356789999999987553
No 44
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.94 E-value=4.4e-26 Score=217.63 Aligned_cols=234 Identities=16% Similarity=0.265 Sum_probs=186.3
Q ss_pred ecCCCCCCCCcCCCCCCCCCC---CccccccCHHHHHHHHHHHHhC-----CCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy8190 71 KTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKSD-----GATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 71 ~t~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~-----G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
.-++|...|.||+|++..... ...| .+-+.++++..... .+++|+|+|| +|+....+.+..++..+
T Consensus 40 HiPFC~~~C~YC~fn~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~v~ti~~GGG--TPslL~~~~l~~ll~~l 113 (416)
T COG0635 40 HIPFCVSKCPYCDFNSHVTKRGQPVDEY----LDALLEEIELVAALLGGQREVKTIYFGGG--TPSLLSPEQLERLLKAL 113 (416)
T ss_pred EcccccccCCCCCCeeeccCCCChHHHH----HHHHHHHHHHHHhhcCCCCeEEEEEECCC--ccccCCHHHHHHHHHHH
Confidence 349999999999999854322 1224 23444444433322 3778999988 57788889999999888
Q ss_pred Hhc------CcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEe
Q psy8190 143 KKI------GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCG 212 (348)
Q Consensus 143 ~~~------~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~ 212 (348)
++. +.++ .++|+.++.+.++.|+++|++|+|+|+|| ++++++.++|.|+.++..++++.+++.|+ .++.+
T Consensus 114 ~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~D 193 (416)
T COG0635 114 RELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINID 193 (416)
T ss_pred HHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 753 1444 45899999999999999999999999999 89999999999999999999999999999 69999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCce---ec
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-----SILDPLEFIRTIAVARITMPTSRI---RM 283 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~-----~~~~~~~~~~~~a~~R~~lp~~~i---~~ 283 (348)
+|||+ +||.+++.++++.+.+++ |++++++.|.-.|+|++... ..|+.++.++++..+...+...+. .+
T Consensus 194 LIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yei 271 (416)
T COG0635 194 LIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEI 271 (416)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEee
Confidence 99999 999999999999999999 99999999999999998753 257888889999998887765432 12
Q ss_pred c-----cc--ccccc--hhhHHHHHHhCcceeeeCCee
Q psy8190 284 S-----AG--RKEMG--ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 284 s-----~g--~~~l~--~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+ ++ +||+. ....++++++||.+.+.+.++
T Consensus 272 snfa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~~~~ 309 (416)
T COG0635 272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRIGGTRY 309 (416)
T ss_pred chhcCcchHHHhhhccccCCCeEEECCCceeeeccEEE
Confidence 1 11 34443 334778999999998766443
No 45
>PTZ00413 lipoate synthase; Provisional
Probab=99.94 E-value=3.1e-25 Score=203.18 Aligned_cols=192 Identities=18% Similarity=0.250 Sum_probs=160.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhc--CcE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~--~~~ 148 (348)
++.|+.+|.||+++... . + ..++++|+.+.++.+.+.|++.++++++.. ++++...+.+.+.++.|++. ++.
T Consensus 156 G~~CTr~C~FCaqstg~-~---p-~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~ 230 (398)
T PTZ00413 156 GDHCTRGCRFCSVKTSR-K---P-PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELL 230 (398)
T ss_pred CCCCCCCCCCCCCCCCC-C---C-CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCe
Confidence 89999999999998632 1 1 347999999999999999999887877743 34556789999999999984 688
Q ss_pred EEEecCCC--CHHHHHHHHHhCCCeeeccCCCCHHHHhccCC-CCCHHHHHHHHHHHHHc---CCeeeEeEeeecCCCHH
Q psy8190 149 TCLTLGML--NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNV---GINICCGGIIGLSESRD 222 (348)
Q Consensus 149 i~~~~g~l--~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~---G~~i~~~~i~Glget~e 222 (348)
+++..|.+ +.+.++.|++||++++++++||++++|..|++ .++|++.+++++.+++. |+.+++++|+|+|||.+
T Consensus 231 IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~e 310 (398)
T PTZ00413 231 LEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEE 310 (398)
T ss_pred EEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHH
Confidence 99999966 89999999999999999999999999999995 68999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeeec-ccccccCC-CCCCCCCCCCHHHHHHHHHHH
Q psy8190 223 QRAELIFQLANLNPYPESVPI-NNLVQIKG-TPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~-~~l~P~~g-T~l~~~~~~~~~~~~~~~a~~ 272 (348)
|+++++..|++++ ++.++| +.|.|.+. -|...+ .+++++..+-..+
T Consensus 311 Evie~m~dLrelG--VDivtIGQYL~Ps~~h~~V~~y--v~P~~F~~~~~~a 358 (398)
T PTZ00413 311 EVRQTLRDLRTAG--VSAVTLGQYLQPTKTRLKVSRY--AHPKEFEMWEEEA 358 (398)
T ss_pred HHHHHHHHHHHcC--CcEEeeccccCCCcccCCceec--cCHHHHHHHHHHH
Confidence 9999999999999 999999 56677542 334333 3444443333333
No 46
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.94 E-value=4.9e-25 Score=201.08 Aligned_cols=197 Identities=17% Similarity=0.245 Sum_probs=164.2
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCC-CCcccHHHHHHHHHHHHhc-
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~-~~~~~~~~~~~l~~~i~~~- 145 (348)
+.+ +++|+.+|+||+++... + +.+ .+++++.++++.+.+.|+++|+|+|+..+ ......+.+.++++.|++.
T Consensus 67 m~i-~~gC~~~C~FC~v~~~r--g--~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~ 140 (302)
T TIGR00510 67 MIL-GDICTRRCPFCDVAHGR--N--PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKL 140 (302)
T ss_pred Eec-CcCcCCCCCcCCccCCC--C--CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcC
Confidence 456 99999999999997532 1 111 46899999999999999999999987432 2223467899999999984
Q ss_pred -CcEEEEecCC--CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCC
Q psy8190 146 -GLETCLTLGM--LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLSES 220 (348)
Q Consensus 146 -~~~i~~~~g~--l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget 220 (348)
++.+.+.... -+.+.++.|+++|.+.+.+++||++++|+.++++++++++++.++.+++. |+.+++++|+|+|||
T Consensus 141 p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGET 220 (302)
T TIGR00510 141 PNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGET 220 (302)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCC
Confidence 4455443221 26789999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeecccc-cc-cCCCCCCCCCCCCHHHHHHHHHHH
Q psy8190 221 RDQRAELIFQLANLNPYPESVPINNL-VQ-IKGTPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~~~~~~i~~~~l-~P-~~gT~l~~~~~~~~~~~~~~~a~~ 272 (348)
.+|+.++++++++++ ++.+.+..| .| .+++|+..+..|+..+.++.++..
T Consensus 221 eee~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~ 272 (302)
T TIGR00510 221 NEEIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALE 272 (302)
T ss_pred HHHHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 999999999999999 899988665 56 578999888888888888887765
No 47
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.94 E-value=3.2e-25 Score=204.22 Aligned_cols=222 Identities=18% Similarity=0.251 Sum_probs=171.8
Q ss_pred HHHHHHhhcCCCceEEEEEEEeecCCCCC--------CCCcCCCCCCCCCCCc--cccccCHHHHH-HHHHHHHhCCCCE
Q psy8190 49 AQKVHRKYFDANEIELAVLLSIKTGGCTE--------DCGYCPQSTHYNTEIT--ATKILSIESVI-TAAQKAKSDGATR 117 (348)
Q Consensus 49 A~~~~~~~~~g~~v~~~~~i~i~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~~~eei~-~~~~~~~~~G~~~ 117 (348)
..++ +++| |.+|+-. .++. +-.||+ .|.||+........ . ..+..++++-+ +..+.....+...
T Consensus 6 ~~~~-~~~~-g~~v~k~-~~~~-g~~cpnrdg~~~~~gC~FC~~~~~~~~~-~~~~~~~~~i~~qi~~~~~~~~~~~~~~ 80 (302)
T TIGR01212 6 GDYL-KERY-GQKVFKI-TLHG-GFSCPNRDGTKGRGGCTFCNDASRPIFA-DEYTQARIPIKEQIKKQMKKYKKDKKFI 80 (302)
T ss_pred HHHH-HHHc-CCceEEe-ecCC-CCCCCCCCCCCCCCCcccCCCCCCcccc-ccccccCCCHHHHHHHHHHHhhccCEEE
Confidence 3455 4568 8888754 4566 899998 69999976632111 0 01123433333 3333333333333
Q ss_pred EEEeccCCCCCcccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHHHH---HhCC-CeeeccCCC-CHHHHhccCC
Q psy8190 118 FCMGAAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLK---KVGL-DYYNHNLDT-SPKLYGDIIS 188 (348)
Q Consensus 118 i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~Lk---~aG~-~~i~~g~et-~~e~l~~i~~ 188 (348)
++|+|| +++..+.+.+.++++.+.+. ++.+.+++..++++.++.|+ ++|+ .++++|+|| ++++++.+++
T Consensus 81 iyf~gg--t~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 81 AYFQAY--TNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR 158 (302)
T ss_pred EEEECC--CcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC
Confidence 789888 46677899999999999874 33445578889997766665 5699 579999999 7999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC------CCCC
Q psy8190 189 TRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILD 261 (348)
Q Consensus 189 ~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~------~~~~ 261 (348)
+|+.+++.++++.++++|+.+++++|+|+ |||.+++.++++++.+++ ++.+.++++.|.||||+++. .+++
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~ 236 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLS 236 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999 999999999999999999 99999999999999999763 6788
Q ss_pred HHHHHHHHHHHHHHCCCC
Q psy8190 262 PLEFIRTIAVARITMPTS 279 (348)
Q Consensus 262 ~~~~~~~~a~~R~~lp~~ 279 (348)
.+++++.+..+...+|..
T Consensus 237 ~~e~~~~~~~~l~~l~~~ 254 (302)
T TIGR01212 237 LEEYISLACDFLEHLPPE 254 (302)
T ss_pred HHHHHHHHHHHHHhCCcC
Confidence 899888888887777763
No 48
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.94 E-value=2.6e-25 Score=217.75 Aligned_cols=183 Identities=19% Similarity=0.273 Sum_probs=158.5
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy8190 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
..+.. |+|||++|.||+++..... ..|+.++++.|+++++.+.+. |++.|+|.++.. ..+.+++.++++.++
T Consensus 198 ~~i~t-sRGCp~~C~FC~~~~~~~g--~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f---~~~~~~~~~l~~~l~ 271 (472)
T TIGR03471 198 ISLYT-GRGCPSKCTFCLWPQTVGG--HRYRTRSAESVIEEVKYALENFPEVREFFFDDDTF---TDDKPRAEEIARKLG 271 (472)
T ss_pred EEEEe-cCCCCCCCCCCCCCccCCC--CceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCC---CCCHHHHHHHHHHHh
Confidence 34566 9999999999997653211 356678999999999988764 789999977632 245678899999998
Q ss_pred hcCcEEEEec-CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCC
Q psy8190 144 KIGLETCLTL-GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SES 220 (348)
Q Consensus 144 ~~~~~i~~~~-g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get 220 (348)
+.++.+.++. ..++++.++.|+++|++++.+|+|| ++++++.++++++.++..++++.++++|+.+..++|+|+ |||
T Consensus 272 ~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget 351 (472)
T TIGR03471 272 PLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGET 351 (472)
T ss_pred hcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCC
Confidence 8777665543 3589999999999999999999999 899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy8190 221 RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.+++.++++++.+++ ++.+.++.+.|.||||+++
T Consensus 352 ~e~~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 352 RETIRKTIDFAKELN--PHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred HHHHHHHHHHHHhcC--CCceeeeecccCCCcHHHH
Confidence 999999999999998 8999999999999999875
No 49
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.94 E-value=7.5e-25 Score=211.12 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=164.9
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~~ 141 (348)
...+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|........+ ..++.++++.
T Consensus 139 ~~~i~i-srGCp~~CsfC~~~~~~g----~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~ 213 (414)
T TIGR01579 139 RAFIKV-QDGCNFFCSYCIIPFARG----RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQ 213 (414)
T ss_pred EEEEEe-ccCcCCCCCCCceeeecC----CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHH
Confidence 345777 999999999999776432 45568999999999999999999999987532211111 2467888888
Q ss_pred HHhc-Cc-EEE---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH--cCCeeeE
Q psy8190 142 VKKI-GL-ETC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICC 211 (348)
Q Consensus 142 i~~~-~~-~i~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~--~G~~i~~ 211 (348)
+.+. ++ .+. +++..++++.++.|+++| +..+.+|+|| ++++++.++++++.+++.++++.+++ .|+.+++
T Consensus 214 l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~ 293 (414)
T TIGR01579 214 ILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGT 293 (414)
T ss_pred HhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeee
Confidence 8764 33 233 346678999999999987 7899999999 89999999999999999999999999 8999999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHHHHH
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVAR 273 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a~~R 273 (348)
++|+|+ |||.+++.++++++.+++ ++.+.+++|.|.||||++..+ ..+.....+-....+
T Consensus 294 ~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~ 355 (414)
T TIGR01579 294 DIIVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLK 355 (414)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHH
Confidence 999999 999999999999999998 899999999999999999865 466655544444433
No 50
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.93 E-value=9.8e-25 Score=212.46 Aligned_cols=237 Identities=12% Similarity=0.179 Sum_probs=181.2
Q ss_pred ecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 71 KTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 71 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.-++|+.+|.||+++...... .......++.++++++.... .++..|+|+|| +|+..+.+++.++++.+++.
T Consensus 55 HiPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGG--tP~~l~~~~l~~ll~~i~~~ 131 (455)
T TIGR00538 55 HIPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGG--TPTYLSPEQISRLMKLIREN 131 (455)
T ss_pred EeCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCC--CcCCCCHHHHHHHHHHHHHh
Confidence 349999999999998743211 12222246777777765432 36888999988 45556788999999999863
Q ss_pred -----C--cEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeee
Q psy8190 146 -----G--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIG 216 (348)
Q Consensus 146 -----~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~G 216 (348)
+ +.+.++++.++++.++.|+++|+++|++|+|| ++++++.+++.++.++..++++.++++|+. ++.++|+|
T Consensus 132 ~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~G 211 (455)
T TIGR00538 132 FPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYG 211 (455)
T ss_pred CCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEee
Confidence 3 34456788999999999999999999999999 799999999999999999999999999995 89999999
Q ss_pred c-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-CCC----CCCCCCHHHHHHHHHHHHHHCCCCc-ee--cc---
Q psy8190 217 L-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLY----GSSILDPLEFIRTIAVARITMPTSR-IR--MS--- 284 (348)
Q Consensus 217 l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-~l~----~~~~~~~~~~~~~~a~~R~~lp~~~-i~--~s--- 284 (348)
+ |||.+++.++++++.+++ +++++++.+.+.|++ +.. ....+++++..+++..+...+.... .+ ++
T Consensus 212 lPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~~~~~~~fa 289 (455)
T TIGR00538 212 LPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQFIGMDHFA 289 (455)
T ss_pred CCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCEEEecccee
Confidence 9 999999999999999999 999999999776653 222 2345788899999988887665432 22 11
Q ss_pred -cc-------------ccccc----hhhHHHHHHhCcceeeeCCee
Q psy8190 285 -AG-------------RKEMG----ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 285 -~g-------------~~~l~----~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ +++++ ...++.|+++||.+.+.|.++
T Consensus 290 ~~~~~~~~~~~~~~l~~~~~~y~~~~~~~~lG~G~gA~s~~~~~~~ 335 (455)
T TIGR00538 290 KPDDELAVAQRKGELHRNFQGYTTQKDTDLLGFGVTSISMLGDCYA 335 (455)
T ss_pred CCChHHHHHHhhCcceeccccccCCCCCcEEEeCcceeeCCCCeeE
Confidence 11 11111 134678899999998765443
No 51
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=1.2e-24 Score=211.50 Aligned_cols=237 Identities=14% Similarity=0.206 Sum_probs=177.8
Q ss_pred eecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy8190 70 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
+.-++|+.+|.||++.+......... ..-.+.++++++...+ .++..|+|+|| +|+..+.+++.++++.+++
T Consensus 55 vHIPfC~~~C~yC~~~~~~~~~~~~~-~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGG--TPs~l~~~~l~~ll~~i~~ 131 (453)
T PRK13347 55 LHVPFCRSLCWFCGCNTIITQRDAPV-EAYVAALIREIRLVAASLPQRRRVSQLHWGGG--TPTILNPDQFERLMAALRD 131 (453)
T ss_pred EEeCCccccCCCCCCcCcCccccchH-HHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCc--ccccCCHHHHHHHHHHHHH
Confidence 33489999999999886421110010 0124555666554332 25778999988 4666778999999999987
Q ss_pred c-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEee
Q psy8190 145 I-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGII 215 (348)
Q Consensus 145 ~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~ 215 (348)
. +.+ +.++++.++++.++.|+++|++++++|+|| ++++++.+++.++.++..++++.++++|+. +++++|+
T Consensus 132 ~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 132 AFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred hCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
Confidence 3 233 456788999999999999999999999999 799999999999999999999999999995 8999999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCc-eec--c--
Q psy8190 216 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-----LYGSSILDPLEFIRTIAVARITMPTSR-IRM--S-- 284 (348)
Q Consensus 216 Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~-----l~~~~~~~~~~~~~~~a~~R~~lp~~~-i~~--s-- 284 (348)
|+ |||.+++.++++++.+++ |+++.++.|...|++. ......|+.++..+++..+...|.... .+. +
T Consensus 212 GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~~~~~f 289 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPIGLDHF 289 (453)
T ss_pred eCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEEeccce
Confidence 99 999999999999999999 9999999887544422 122346788888999988887775432 121 1
Q ss_pred --c-------------cccccc----hhhHHHHHHhCcceeeeCCe
Q psy8190 285 --A-------------GRKEMG----ETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 285 --~-------------g~~~l~----~~~~~~~l~~GAn~~~~~~~ 311 (348)
+ .+++++ ....+.++++||.+.+.+.+
T Consensus 290 ar~~~~~~~a~~~g~l~r~~~~Y~~~~~~~~lGlG~gA~s~~~~~~ 335 (453)
T PRK13347 290 ALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGY 335 (453)
T ss_pred eCCCchhhHHHhcCcccccccccCCCCCCcEEEECcCceeCCCCce
Confidence 1 122221 23567788899988875544
No 52
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.93 E-value=7.9e-25 Score=215.08 Aligned_cols=180 Identities=12% Similarity=0.169 Sum_probs=155.5
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHH-hCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAK-SDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~-~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.++. |+|||++|.||+.+..+ .+|+.++++.|+++++.+. +.|++.|.|.+.. + ..+.+++.++++.+.+.
T Consensus 196 ~i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~--f-~~~~~~~~~l~~~l~~~ 267 (497)
T TIGR02026 196 VPNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE--P-TINRKKFQEFCEEIIAR 267 (497)
T ss_pred eeec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc--c-ccCHHHHHHHHHHHHhc
Confidence 3556 99999999999987643 3577789999999999876 4799999998762 2 23567899999998865
Q ss_pred C---cEEEEe--cCCC--CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 146 G---LETCLT--LGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 146 ~---~~i~~~--~g~l--~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+ +.+.++ +..+ +++.++.|+++|+.++++|+|| ++++++.++++++.++..++++.++++|+.+.+++|+|+
T Consensus 268 ~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 268 NPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred CCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 4 444433 3334 7899999999999999999999 899999999999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy8190 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
|||.+++.++++++.+++ ++.+.++.+.|.||||+++
T Consensus 348 P~et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 348 ENETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred CCCCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHHH
Confidence 999999999999999999 9999999999999999864
No 53
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=2e-24 Score=209.09 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=159.0
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccH--HHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDL--DNIENMICEV 142 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~--~~~~~l~~~i 142 (348)
++.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|.....+..+. ..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~--g--~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTR--G--KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 456777 99999999999988643 2 345579999999999999999999999876332222111 2467777777
Q ss_pred Hhc-C---cEEE-EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q psy8190 143 KKI-G---LETC-LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 212 (348)
Q Consensus 143 ~~~-~---~~i~-~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~ 212 (348)
.+. + +.+. .++..++++.++.|+++ |+..+++|+|| ++++++.++++++.+++.++++.++++ |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 653 3 2332 24567899999999998 59999999999 899999999999999999999999998 9999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHH
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLE 264 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~ 264 (348)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+ ..+.++
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 99999 999999999999999999 899999999999999998865 344433
No 54
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=3.4e-24 Score=206.24 Aligned_cols=236 Identities=12% Similarity=0.094 Sum_probs=175.8
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC--CCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG--ATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G--~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
+++.-++|+.+|.||+|++..... .... .-.+.+.++++...+.| +..|+|+|| +|+.. .+.+.++++.+++.
T Consensus 55 LYvHIPFC~~~C~yC~f~~~~~~~-~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGG--TPs~l-~~~L~~ll~~i~~~ 129 (433)
T PRK08629 55 LYAHVPFCHTLCPYCSFHRFYFKE-DKAR-AYFISLRKEMEMVKELGYDFESMYVGGG--TTTIL-EDELAKTLELAKKL 129 (433)
T ss_pred EEEEeCCccCcCCCCCCcCcCCCc-chHH-HHHHHHHHHHHHHHhcCCceEEEEECCC--ccccC-HHHHHHHHHHHHHh
Confidence 344459999999999998742111 1111 12577777777665544 677999888 35544 57888888888763
Q ss_pred ----CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHH---HHHHHHHHHcCCeeeEeEeeec
Q psy8190 146 ----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENR---LNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 146 ----~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~---~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
.+.+.++|+.++++.++.|+++ ++++++|+|| ++++++.++|.|+.... ++.++.+++.+..+++++|+|+
T Consensus 130 f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~Gl 208 (433)
T PRK08629 130 FSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNF 208 (433)
T ss_pred CCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccC
Confidence 3445578999999999999999 9999999999 89999999999977555 4444444444446899999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCceecc------cc-
Q psy8190 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG---SSILDPLEFIRTIAVARITMPTSRIRMS------AG- 286 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~---~~~~~~~~~~~~~a~~R~~lp~~~i~~s------~g- 286 (348)
|||.+++.++++++.+++ |++++++++.+.|+|+... .+.++.+...+++..++..+.. ..+.+ .+
T Consensus 209 PgqT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~G-y~~~s~~~f~~~~~ 285 (433)
T PRK08629 209 PGQTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFGQ-YNQLSAWAFSKKND 285 (433)
T ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHCC-CeEecccccCCCCc
Confidence 999999999999999999 9999999999999998542 2356777888899999888873 22222 11
Q ss_pred cccc---chhhHHHHHHhCcceeeeCCee
Q psy8190 287 RKEM---GETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 287 ~~~l---~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.++. ....++.|+++||.+.+.|.++
T Consensus 286 ~~~~~y~~~~~~ylGlG~gA~s~~~~~~~ 314 (433)
T PRK08629 286 EGFDEYVIDYDEYLGVGSGSFSFLDGTLY 314 (433)
T ss_pred hhhceeeccCCeEEEEcCCeeEecCCeEE
Confidence 1111 1345678999999998766544
No 55
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.93 E-value=1.9e-24 Score=210.25 Aligned_cols=235 Identities=11% Similarity=0.157 Sum_probs=178.0
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~- 145 (348)
-++|+.+|.||++....... .......++.++++++...+ .++..|+|+|| +|+..+.+.+.++++.+++.
T Consensus 56 IPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGG--tPs~l~~~~l~~ll~~l~~~~ 132 (453)
T PRK09249 56 IPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGG--TPTFLSPEQLRRLMALLREHF 132 (453)
T ss_pred eCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCc--ccccCCHHHHHHHHHHHHHhC
Confidence 49999999999988643211 11111234566666654332 35788999888 46666789999999998863
Q ss_pred ----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eeeEeEeeec
Q psy8190 146 ----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL 217 (348)
Q Consensus 146 ----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~~~~i~Gl 217 (348)
+.+ +.+++..++++.++.|+++|++++++|+|| ++++++.+++.++.++..++++.++++|+ .+++++|+|+
T Consensus 133 ~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl 212 (453)
T PRK09249 133 NFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGL 212 (453)
T ss_pred CCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 234 456788999999999999999999999999 79999999999999999999999999999 7999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC-----CCCCCCHHHHHHHHHHHHHHCCCCc-eec--c----
Q psy8190 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-----GSSILDPLEFIRTIAVARITMPTSR-IRM--S---- 284 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~-----~~~~~~~~~~~~~~a~~R~~lp~~~-i~~--s---- 284 (348)
|||.+++.++++++.+++ +++++++.+.+.|++... ....++.++..+++..+...+.... .+. +
T Consensus 213 Pgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ye~s~far 290 (453)
T PRK09249 213 PKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQYIGMDHFAL 290 (453)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCEEEeccceeC
Confidence 999999999999999999 999999999866554211 2235788888999988887765532 222 1
Q ss_pred cc------cccc---------c--hhhHHHHHHhCcceeeeCCe
Q psy8190 285 AG------RKEM---------G--ETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 285 ~g------~~~l---------~--~~~~~~~l~~GAn~~~~~~~ 311 (348)
++ .|+. . ....+.++++||.+.+.|.+
T Consensus 291 ~~~~~~~~~~n~~~~~~~~~y~~~~~~~~iglG~gA~s~~~~~~ 334 (453)
T PRK09249 291 PDDELAIAQREGTLHRNFQGYTTDGDCDLIGLGVSAISRIGDGY 334 (453)
T ss_pred CCchHHHHHHhCccccccceeccCCCCeEEEECcCcccCCCCee
Confidence 11 0110 0 02356789999999865543
No 56
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.93 E-value=2.5e-24 Score=209.88 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=158.3
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc----HHHHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----LDNIENMI 139 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~----~~~~~~l~ 139 (348)
..+.+.+ +.|||+.|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+..+ ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~r--G--~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTR--G--KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccC--C--CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 4567888 99999999999987643 2 34568999999999999999999999988643322211 12467888
Q ss_pred HHHHhcCc---EEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeee
Q psy8190 140 CEVKKIGL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 210 (348)
Q Consensus 140 ~~i~~~~~---~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~ 210 (348)
+.+.+.++ .+. .++..++++.++.|+++| +.++++|+|| ++++++.++++++.++++++++.++++ |+.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 88876543 232 357789999999999999 7899999999 899999999999999999999999998 67888
Q ss_pred EeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy8190 211 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 211 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~ 413 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMK 413 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCc
Confidence 9999999 999999999999999998 899999999999999998654
No 57
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.92 E-value=6.5e-24 Score=178.32 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=194.9
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~ 145 (348)
.|++++++|..+|.+|+-.-.+ .+ ...+.++++..+.++.+.|...+.++||-.+-...++..+.+.++++++ .
T Consensus 13 sISVTG~yC~lnC~HCg~~~L~--~M---i~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~ 87 (275)
T COG1856 13 SISVTGAYCSLNCPHCGRHYLE--HM---IKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERT 87 (275)
T ss_pred eEEEeccceEecChHHHHHHHH--Hh---cccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhh
Confidence 4566699999999999944321 11 1234578888888899999999999998544345678899999999998 5
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHH
Q psy8190 146 GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQ 223 (348)
Q Consensus 146 ~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~ 223 (348)
++.+.++.|.++++.++.|+++++|.+++.+=+++++.+++-+ .++.+++++.++.+++.|+++..++++|+ +-..+.
T Consensus 88 ~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~ 167 (275)
T COG1856 88 GLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHG 167 (275)
T ss_pred CeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccc
Confidence 9999999999999999999999999999988887777776644 67999999999999999999999999999 666666
Q ss_pred HHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc--ccchhhHHHHHHh
Q psy8190 224 RAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK--EMGETTQAFCFLA 301 (348)
Q Consensus 224 ~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~--~l~~~~~~~~l~~ 301 (348)
-.+.++.+.+.. +|.+.+..|+|.|||.|.+.++|+++|..+.+..||..+|+ .+.+...|+ ....+++..+..+
T Consensus 168 e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~ 244 (275)
T COG1856 168 EFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLA 244 (275)
T ss_pred hHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHc
Confidence 678889999888 99999999999999999999999999999999999999999 444332221 2235678889999
Q ss_pred Ccceeee
Q psy8190 302 GANSIFY 308 (348)
Q Consensus 302 GAn~~~~ 308 (348)
|+|.+..
T Consensus 245 gVd~It~ 251 (275)
T COG1856 245 GVDRITF 251 (275)
T ss_pred CCceeec
Confidence 9999943
No 58
>PLN02428 lipoic acid synthase
Probab=99.92 E-value=1.7e-23 Score=193.04 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=155.9
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~ 145 (348)
.+-+ +++|+.+|.||+++... .+++ ..++++.+.++.+.+.|+++++|+++.. +.++...+++.++++.|++.
T Consensus 105 ~mil-g~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~ 178 (349)
T PLN02428 105 IMIL-GDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQL 178 (349)
T ss_pred EEEe-cCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHh
Confidence 3455 99999999999998632 1233 5688888888888889999999988843 22456788999999999985
Q ss_pred --CcEEEE-ecCCC-CHHHHHHHHHhCCCeeeccCCCCHHHHhccC-CCCCHHHHHHHHHHHHHc--CCeeeEeEeeecC
Q psy8190 146 --GLETCL-TLGML-NENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRNV--GINICCGGIIGLS 218 (348)
Q Consensus 146 --~~~i~~-~~g~l-~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glg 218 (348)
.+.+++ .++.+ +++.++.|+++|++.+.+++||++++++.|+ +.+++++++++++.+++. |+.+++++|+|+|
T Consensus 179 ~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLG 258 (349)
T PLN02428 179 KPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLG 258 (349)
T ss_pred CCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecC
Confidence 345554 34443 8999999999999999999999999999999 688999999999999999 9999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccc-cccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8190 219 ESRDQRAELIFQLANLNPYPESVPINNL-VQIKGTPLYGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l-~P~~gT~l~~~~~~~~~~~~~~~a~~R 273 (348)
||.+|+.++++++++++ ++.+.+..| .|.+-+ +.-..-.+++++..+-.++.
T Consensus 259 ET~Edv~e~l~~Lrelg--vd~vtigqyL~Ps~~h-~~v~~~v~p~~f~~~~~~~~ 311 (349)
T PLN02428 259 ETDEEVVQTMEDLRAAG--VDVVTFGQYLRPTKRH-LPVKEYVTPEKFEFWREYGE 311 (349)
T ss_pred CCHHHHHHHHHHHHHcC--CCEEeeccccCCCcce-eeeecccCHHHHHHHHHHHH
Confidence 99999999999999999 999999655 443211 11122345555544444444
No 59
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.92 E-value=4.7e-24 Score=206.50 Aligned_cols=194 Identities=14% Similarity=0.195 Sum_probs=160.6
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~~ 141 (348)
+..+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|........+ ...+.++++.
T Consensus 140 ~~~i~~-srGC~~~CsfC~~~~~~g----~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 214 (429)
T TIGR00089 140 RAFLKI-QEGCDKFCTYCIVPYARG----RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRE 214 (429)
T ss_pred EEEEEH-HhCcCCCCCcCceecccC----CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHH
Confidence 345677 999999999999876432 45568999999999999999999999987532221111 1357888888
Q ss_pred HHhc-Cc-EEEE---ecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC--CeeeE
Q psy8190 142 VKKI-GL-ETCL---TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG--INICC 211 (348)
Q Consensus 142 i~~~-~~-~i~~---~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~ 211 (348)
+++. +. .+.+ ++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.++++| +.+.+
T Consensus 215 l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~ 294 (429)
T TIGR00089 215 LSKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITT 294 (429)
T ss_pred HhcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEe
Confidence 8764 33 2332 46678999999999995 9999999999 8999999999999999999999999998 88999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+..
T Consensus 295 ~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~ 348 (429)
T TIGR00089 295 DIIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVK 348 (429)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHH
Confidence 999999 999999999999999998 899999999999999999765 4554443
No 60
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=9.2e-24 Score=205.15 Aligned_cols=198 Identities=11% Similarity=0.167 Sum_probs=161.1
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-c----ccHHHHHHHHH
Q psy8190 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-D----RDLDNIENMIC 140 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-~----~~~~~~~~l~~ 140 (348)
..+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+ . .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~G----~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTRG----EEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCcccC----CcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 45667 999999999999876432 22247999999999999999999999987632221 1 11246788888
Q ss_pred HHHhc-Cc---EEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeee
Q psy8190 141 EVKKI-GL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 210 (348)
Q Consensus 141 ~i~~~-~~---~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~ 210 (348)
.+.+. ++ .+. .++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 88763 33 332 246678999999999985 8999999999 899999999999999999999999997 78899
Q ss_pred EeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHHH
Q psy8190 211 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIA 270 (348)
Q Consensus 211 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~a 270 (348)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+...+...
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 363 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQ 363 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHH
Confidence 9999999 999999999999999998 899999999999999999865 455554443333
No 61
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.92 E-value=1e-23 Score=204.03 Aligned_cols=193 Identities=15% Similarity=0.203 Sum_probs=159.3
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHHH
Q psy8190 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEV 142 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~i 142 (348)
+.+.+ ++|||++|+||..+..+ + +++.+++++|+++++.+.+.|+++|.|.+....... ...+++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~--G--~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIR--G--KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeeccc--C--CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 45777 99999999999987643 2 355689999999999999999999988764221111 1235788888888
Q ss_pred HhcC-cEE-E---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q psy8190 143 KKIG-LET-C---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 212 (348)
Q Consensus 143 ~~~~-~~i-~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~ 212 (348)
.+.+ +.+ . +++..++++.++.|+++| +..+.+|+|| ++++++.++++++.+++.++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 8754 332 1 346678999999999995 7899999999 899999999999999999999999998 5678899
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||+++..+ ..+.++.
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~ 344 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVK 344 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHH
Confidence 99999 999999999999999998 899999999999999998764 3554443
No 62
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1e-23 Score=203.95 Aligned_cols=193 Identities=11% Similarity=0.160 Sum_probs=158.7
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+......+.++++.+.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~ 229 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYTR--G--RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLD 229 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhc
Confidence 456777 99999999999987542 2 345689999999999999999999999887443333333457777777754
Q ss_pred c-C---cEEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEe
Q psy8190 145 I-G---LETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGI 214 (348)
Q Consensus 145 ~-~---~~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i 214 (348)
. + +.+. .++..++++.++.|+++| +..+.+++|| ++++++.++++++.+++.++++.++++ |+.+.+++|
T Consensus 230 ~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~I 309 (449)
T PRK14332 230 ETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDII 309 (449)
T ss_pred CCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 3 2 2222 246678999999999998 8999999999 899999999999999999999999997 678889999
Q ss_pred eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC-CCC-CCCHHH
Q psy8190 215 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSS-ILDPLE 264 (348)
Q Consensus 215 ~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~-~~~-~~~~~~ 264 (348)
+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||.+ ..+ .++.++
T Consensus 310 vGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 999 999999999999999999 999999999999999997 443 344443
No 63
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.3e-23 Score=204.45 Aligned_cols=193 Identities=11% Similarity=0.121 Sum_probs=157.2
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc--------cHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR--------DLDNIE 136 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~--------~~~~~~ 136 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.... ....+.
T Consensus 169 ~a~i~i-srGCp~~CsFC~ip~~~--G--~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~ 243 (467)
T PRK14329 169 SAFVSI-MRGCDNMCTFCVVPFTR--G--RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFA 243 (467)
T ss_pred EEEEEe-ccCcccCCCCCcccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHH
Confidence 346777 99999999999987643 2 3456899999999999999999999888742111111 123577
Q ss_pred HHHHHHHhc--CcEEE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--C
Q psy8190 137 NMICEVKKI--GLETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--G 206 (348)
Q Consensus 137 ~l~~~i~~~--~~~i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G 206 (348)
++++.+.+. +..+. .++..++++.++.|+++ |+.++++|+|| ++++++.++++++.++..++++.++++ |
T Consensus 244 ~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~ 323 (467)
T PRK14329 244 QLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPD 323 (467)
T ss_pred HHHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 888877653 33333 34677899999999997 89999999999 899999999999999999999999997 5
Q ss_pred CeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CC-CCCHHH
Q psy8190 207 INICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SS-ILDPLE 264 (348)
Q Consensus 207 ~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~-~~~~~~ 264 (348)
+.+++++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++. .+ ..+.+.
T Consensus 324 ~~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~~~~~~v~~~~ 382 (467)
T PRK14329 324 CGISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAARKLEDDVPEEV 382 (467)
T ss_pred CEEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhhhCCCCCCHHH
Confidence 77899999999 999999999999999998 8999999999999999985 43 344433
No 64
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=203.49 Aligned_cols=191 Identities=10% Similarity=0.158 Sum_probs=158.4
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc--cHHHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR--DLDNIENMICEV 142 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~--~~~~~~~l~~~i 142 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+.. ....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFTR--G--RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCccccc--C--CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 356778 99999999999987542 2 3556899999999999999999999998774322111 113467777777
Q ss_pred Hhc--CcEEEE---ecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEe
Q psy8190 143 KKI--GLETCL---TLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 212 (348)
Q Consensus 143 ~~~--~~~i~~---~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~ 212 (348)
.+. +..+.+ ++..++++.++.|+++ |+..+.+|+|| ++++++.++++++.++..++++.+++. |+.+.++
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 652 333332 4667899999999997 79999999999 899999999999999999999999998 9999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CC-CCCH
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SS-ILDP 262 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~-~~~~ 262 (348)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++. .+ ..+.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 99999 999999999999999999 8999999999999999985 43 3453
No 65
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=202.70 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=158.6
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc------HHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD------LDNIEN 137 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~------~~~~~~ 137 (348)
.++.+.+ ++|||++|+||..+...+. .+.+++++|+++++.+.+.|+++|.|.|.....+..+ ...+.+
T Consensus 127 ~~a~i~i-srGC~~~CsFC~ip~~rG~----~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~ 201 (420)
T PRK14339 127 YKSLVNI-SIGCDKKCTYCIVPHTRGK----EISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSD 201 (420)
T ss_pred eEEEEEe-cCCCCCCCCcCCcccccCC----CCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHH
Confidence 3567888 9999999999998865322 2236999999999999999999999988633221111 124778
Q ss_pred HHHHHHhc-CcE-EE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CC
Q psy8190 138 MICEVKKI-GLE-TC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GI 207 (348)
Q Consensus 138 l~~~i~~~-~~~-i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~ 207 (348)
+++.+.+. ++. +. +++..++++.++.|+++ |+..+.+|+|| ++++++.++++++.++..++++.++++ |+
T Consensus 202 Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i 281 (420)
T PRK14339 202 LLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEV 281 (420)
T ss_pred HHHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCC
Confidence 88777652 432 22 34557889999999998 68999999999 899999999999999999999999997 78
Q ss_pred eeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy8190 208 NICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 208 ~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+..
T Consensus 282 ~i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~k 339 (420)
T PRK14339 282 SISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEVA 339 (420)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHHH
Confidence 8999999999 999999999999999998 888999999999999988764 4554433
No 66
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.7e-23 Score=203.20 Aligned_cols=194 Identities=10% Similarity=0.155 Sum_probs=158.6
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-c----HHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR-D----LDNIENMI 139 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-~----~~~~~~l~ 139 (348)
++.+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+.. + ...+.+++
T Consensus 153 ~~~i~I-~rGC~~~CsfC~~p~~rG----~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll 227 (455)
T PRK14335 153 QSFIPI-MNGCNNFCSYCIVPYVRG----REISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLL 227 (455)
T ss_pred eEEEEh-hcCCCCCCCCCCcccCCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHH
Confidence 345677 899999999999876432 2335799999999999999999999998863322110 1 12467777
Q ss_pred HHHHh-----cCcEE----EEecCCCCHHHHHHHHH--hCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--
Q psy8190 140 CEVKK-----IGLET----CLTLGMLNENQAYRLKK--VGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV-- 205 (348)
Q Consensus 140 ~~i~~-----~~~~i----~~~~g~l~~e~l~~Lk~--aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~-- 205 (348)
+.+.+ .++.+ .+++..++++.++.|++ +|+..+.+++|| ++++++.++++++.+++.++++.+++.
T Consensus 228 ~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~p 307 (455)
T PRK14335 228 RHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIP 307 (455)
T ss_pred HHHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 77631 23332 24677889999999998 489999999999 899999999999999999999999998
Q ss_pred CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy8190 206 GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 206 G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
|+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+ ..+.+..
T Consensus 308 gi~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~k 367 (455)
T PRK14335 308 NVALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEVK 367 (455)
T ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHHH
Confidence 999999999999 999999999999999999 899999999999999999865 4555443
No 67
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.92 E-value=1.6e-23 Score=202.81 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=156.5
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-cc----cHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-DR----DLDNIENMI 139 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-~~----~~~~~~~l~ 139 (348)
.+.+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|+|+|...+.+ .. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~G----~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTRG----DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeecC----CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 456777 999999999999875432 23457999999999999999999999987532222 11 123577788
Q ss_pred HHHHh-cCcE-EE---EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCee
Q psy8190 140 CEVKK-IGLE-TC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 209 (348)
Q Consensus 140 ~~i~~-~~~~-i~---~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i 209 (348)
+.+.+ .++. +. +++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.++++ |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 88765 2432 22 356788999999999999 9999999999 899999999999999999999999997 7888
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy8190 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~ 348 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMP 348 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCC
Confidence 99999999 999999999999999998 899999999999999999865
No 68
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=1.5e-23 Score=203.25 Aligned_cols=195 Identities=14% Similarity=0.180 Sum_probs=158.3
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~~ 141 (348)
.+.+.+ ++|||++|+||..+...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+..+ ...+.++++.
T Consensus 148 ~~~i~i-~rGC~~~CsfC~~p~~~g----~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 222 (439)
T PRK14328 148 KAFVTI-MYGCNNFCTYCIVPYVRG----RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRR 222 (439)
T ss_pred EEEEEH-HhCcCCCCCCCCcccccC----CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHH
Confidence 346777 999999999999886432 23457999999999999999999999988643222111 1246677777
Q ss_pred HHhc-C---cEE-EEecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy8190 142 VKKI-G---LET-CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~---~~i-~~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+.+. + +.+ ..++..++++.++.|+++| +.++++|+|| ++++++.++++++.+++.++++.+++. |+.+.+
T Consensus 223 l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~ 302 (439)
T PRK14328 223 VNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITT 302 (439)
T ss_pred HHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 7652 3 222 2357788999999999996 8999999999 899999999999999999999999997 678899
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHH
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFI 266 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~ 266 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+...
T Consensus 303 d~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 357 (439)
T PRK14328 303 DIIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPEDVKH 357 (439)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHHHHH
Confidence 999999 999999999999999998 899999999999999999763 44544333
No 69
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2.6e-23 Score=199.86 Aligned_cols=193 Identities=11% Similarity=0.157 Sum_probs=159.2
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---HHHHHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMIC 140 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~---~~~~~~l~~ 140 (348)
..+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|+|...+.+..+ ...+.++++
T Consensus 124 ~~a~i~i-~rGC~~~CsFC~ip~~r--G--~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~ 198 (418)
T PRK14336 124 VSANVTI-MQGCDNFCTYCVVPYRR--G--REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLS 198 (418)
T ss_pred eEEEEEe-ccCCCCCCccCCccccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHH
Confidence 3456788 99999999999987542 2 34568999999999999999999999988743322221 245788888
Q ss_pred HHHhc-C-cEEE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeee
Q psy8190 141 EVKKI-G-LETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 210 (348)
Q Consensus 141 ~i~~~-~-~~i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~ 210 (348)
.+.+. + ..+. .++..++++.++.|+++ |+..+.+|+|| ++++++.++++++.+++.++++.++++ |+.+.
T Consensus 199 ~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~ 278 (418)
T PRK14336 199 ALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQ 278 (418)
T ss_pred HHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 88763 2 2333 24667889999999995 59999999999 899999999999999999999999998 99999
Q ss_pred EeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-C-CCCCHH
Q psy8190 211 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-S-SILDPL 263 (348)
Q Consensus 211 ~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~-~~~~~~ 263 (348)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++. . ...+.+
T Consensus 279 ~d~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~ 332 (418)
T PRK14336 279 TDLIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVI 332 (418)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHH
Confidence 9999999 999999999999999998 8999999999999999984 4 334443
No 70
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=3e-23 Score=203.25 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=156.0
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~ 141 (348)
.+.+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|...+.+. .+...+.++++.
T Consensus 158 ~a~v~i-srGCp~~CsFC~ip~~rG----~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~ 232 (502)
T PRK14326 158 AAWVSI-SVGCNNTCTFCIVPSLRG----KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRA 232 (502)
T ss_pred eEEEEE-ccCCCCCCccCceeccCC----CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHH
Confidence 356778 999999999999887542 234579999999999999999999999876332211 233467777777
Q ss_pred HHhc-Cc---EEE-EecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy8190 142 VKKI-GL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~~---~i~-~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+... ++ .+. .++..+++|.++.|+++| +..+.+|+|| ++++++.++++++.+++.++++.+++. |+.+++
T Consensus 233 l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~ 312 (502)
T PRK14326 233 CGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITT 312 (502)
T ss_pred HHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 6643 32 332 346678999999999997 8999999999 899999999999999999999999996 788999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+
T Consensus 313 ~~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 313 DIIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 999999 999999999999999998 888999999999999998764
No 71
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=4e-23 Score=200.88 Aligned_cols=187 Identities=13% Similarity=0.202 Sum_probs=157.5
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---cHHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~~~l~~~ 141 (348)
...+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+.. ..+.+.++++.
T Consensus 156 ~~~i~I-~rGC~~~CsfC~~p~~~--G--~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 156 TVHVPI-IYGCNMSCSYCVIPLRR--G--RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred EEEEEc-ccCCCCCCCcCCeeccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 445778 89999999999987642 2 3345799999999999999999999998853222111 23568888888
Q ss_pred HHhc-Cc---EE-EEecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy8190 142 VKKI-GL---ET-CLTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~~---~i-~~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+.+. ++ .+ +.++..++++.++.|+++ |+.++++|+|| ++++++.++++++.+++.++++.+++. |+.+.+
T Consensus 231 l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~ 310 (459)
T PRK14338 231 VHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTT 310 (459)
T ss_pred HHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 8873 43 33 236778999999999995 58999999999 899999999999999999999999998 788999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+
T Consensus 311 d~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 311 DIIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhCc
Confidence 999999 999999999999999998 899999999999999998753
No 72
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.92 E-value=2.4e-23 Score=201.60 Aligned_cols=185 Identities=15% Similarity=0.212 Sum_probs=152.9
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc---cHHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICE 141 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~~~l~~~ 141 (348)
++.+.+ ++|||++|.||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+.. ....+.++++.
T Consensus 141 ~~~v~i-~rGC~~~CsFC~ip~~~--G--~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~ 215 (434)
T PRK14330 141 HAWVTI-IYGCNRFCTYCIVPYTR--G--REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEE 215 (434)
T ss_pred EEEEEc-ccCCCCCCCCCceECcC--C--CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHH
Confidence 345777 89999999999987543 2 3456899999999999999999999887753222111 12356677776
Q ss_pred HHhc-CcE-E---EEecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy8190 142 VKKI-GLE-T---CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 142 i~~~-~~~-i---~~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+.+. ++. + ..++..++++.++.|+++| +.++.+|+|| ++++++.++++++.+++.++++.+++. |+.+++
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~ 295 (434)
T PRK14330 216 ASKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISS 295 (434)
T ss_pred HHhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 6542 332 1 1245678999999999998 7899999999 899999999999999999999999996 788999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++
T Consensus 296 d~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 296 DIIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 999999 999999999999999999 9999999999999999987
No 73
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=3.9e-23 Score=200.15 Aligned_cols=195 Identities=14% Similarity=0.186 Sum_probs=155.0
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC---cccHHHHHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK---DRDLDNIENMIC 140 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~---~~~~~~~~~l~~ 140 (348)
..+.+.+ ++|||++|+||.++...+ +.+.+++++|+++++.+.+.|+++|.|+|...... ......+.++++
T Consensus 138 ~~~~l~i-srGC~~~CsfC~~p~~~g----~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~ 212 (440)
T PRK14334 138 LSAHLTI-MRGCNHHCTYCIVPTTRG----PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLR 212 (440)
T ss_pred eEEEEEe-ccCCCCCCcCCCcchhcC----CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHH
Confidence 3456777 999999999999886422 22247899999999999999999998876321100 001124556666
Q ss_pred HHHhcCc---EEE-EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC--eeeE
Q psy8190 141 EVKKIGL---ETC-LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI--NICC 211 (348)
Q Consensus 141 ~i~~~~~---~i~-~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~--~i~~ 211 (348)
.+.+.++ .+. .++..++++.++.|+++ |+.++++|+|| ++++++.++++++.+++.++++.++++|. .+++
T Consensus 213 ~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~ 292 (440)
T PRK14334 213 LVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLST 292 (440)
T ss_pred HHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 6655443 332 25678899999999995 59999999999 89999999999999999999999999975 4789
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC-CCCCHHHH
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-SILDPLEF 265 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~-~~~~~~~~ 265 (348)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++.. ...++++.
T Consensus 293 d~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 293 DIIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 999999 999999999999999999 99999999999999999764 34555443
No 74
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.91 E-value=4.3e-23 Score=198.72 Aligned_cols=193 Identities=14% Similarity=0.242 Sum_probs=153.1
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc-HHHHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD-LDNIENMICEVK 143 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~-~~~~~~l~~~i~ 143 (348)
.+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|.+...+..+ ...+.++++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~~--G--~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHAR--G--KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 457788 99999999999987542 2 35568999999999999999999999987532221111 124566666665
Q ss_pred hc--CcEEEE---ecC---CCCHHHHHHHHHhC-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeE
Q psy8190 144 KI--GLETCL---TLG---MLNENQAYRLKKVG-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 211 (348)
Q Consensus 144 ~~--~~~i~~---~~g---~l~~e~l~~Lk~aG-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~ 211 (348)
+. ...+.+ ++. .++++.++.++..| +..+.+|+|| ++++++.++++++.+++.++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 43 222322 232 34577777777655 5889999999 899999999999999999999999998 889999
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHH
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 264 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~ 264 (348)
++|+|+ |||.+++.++++++.+++ ++.+.+++|.|.||||++..+..+.+.
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~~ 340 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTNI 340 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHHH
Confidence 999999 999999999999999998 899999999999999999876655443
No 75
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=7.1e-23 Score=198.58 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=159.1
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc----HHHHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----LDNIENMI 139 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~----~~~~~~l~ 139 (348)
..+.+.+ ++|||++|+||..+... + +++.+++++|+++++.+.+.|+++|.|.|...+.+..+ ...+.+++
T Consensus 148 ~~a~v~i-~rGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll 222 (446)
T PRK14337 148 ASAFVNI-MQGCDNFCAYCIVPYTR--G--RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLL 222 (446)
T ss_pred cEEEEEe-ccCCCCCCcCCCcccCC--C--CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHH
Confidence 3456788 99999999999987532 2 34568999999999999999999999987532211111 13577777
Q ss_pred HHHHhc-Cc---EEE-EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCee
Q psy8190 140 CEVKKI-GL---ETC-LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 209 (348)
Q Consensus 140 ~~i~~~-~~---~i~-~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i 209 (348)
+.+.+. ++ .+. .++..++++.++.|++. |+.++.+|+|| ++++++.++++++.+++.++++.+++. |+.+
T Consensus 223 ~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i 302 (446)
T PRK14337 223 HKVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIAL 302 (446)
T ss_pred HHHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 777653 32 332 35778899999999984 68999999999 899999999999999999999999997 6889
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy8190 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
++++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||.+..+ ..+.+..
T Consensus 303 ~~d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~vk 358 (446)
T PRK14337 303 TTDLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEVK 358 (446)
T ss_pred EEeEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHHH
Confidence 99999999 999999999999999998 899999999999999998864 3555433
No 76
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.91 E-value=3.9e-23 Score=200.64 Aligned_cols=194 Identities=11% Similarity=0.192 Sum_probs=156.8
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC----------cccHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK----------DRDLDN 134 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~----------~~~~~~ 134 (348)
.+.+.+ +.|||++|+||.++...+ +++.+++++|+++++.+.+.|+++|.|.|...+.+ ......
T Consensus 149 ~a~i~i-~~GC~~~CsFC~ip~~rG----~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~ 223 (448)
T PRK14333 149 TAWVNV-IYGCNERCTYCVVPSVRG----KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHT 223 (448)
T ss_pred eEEEEh-hcCCCCCCCCCceecccC----CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCcccccccccc
Confidence 446677 999999999999886432 22347899999999999889999998876321111 011236
Q ss_pred HHHHHHHHHhc-Cc-EEE---EecCCCCHHHHHHHHHh--CCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc-
Q psy8190 135 IENMICEVKKI-GL-ETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV- 205 (348)
Q Consensus 135 ~~~l~~~i~~~-~~-~i~---~~~g~l~~e~l~~Lk~a--G~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~- 205 (348)
+.++++.+.+. ++ .+. .++..++++.++.|+++ |+.++.+|+|| ++++++.++++++.+++.++++.++++
T Consensus 224 l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~ 303 (448)
T PRK14333 224 LTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYM 303 (448)
T ss_pred HHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 78888877763 33 232 34667889999999986 58999999999 899999999999999999999999998
Q ss_pred -CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHH
Q psy8190 206 -GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEF 265 (348)
Q Consensus 206 -G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~ 265 (348)
|+.+++++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+..
T Consensus 304 p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~ 364 (448)
T PRK14333 304 PDASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEVK 364 (448)
T ss_pred CCcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHHH
Confidence 778999999999 999999999999999998 899999999999999998753 3444433
No 77
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.91 E-value=1.8e-22 Score=195.31 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=157.5
Q ss_pred EEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc-------------H
Q psy8190 66 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD-------------L 132 (348)
Q Consensus 66 ~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~-------------~ 132 (348)
+.+.+ ++|||++|+||..+..++ +++.+++++|+++++.+.+.|+++|.|.|.+.+.+..+ .
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~G----~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMRG----DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCcccccC----CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 45677 999999999999876532 34568999999999999999999998875422111101 3
Q ss_pred HHHHHHHHHHHhcCcEEEE---ecCCCCHHHHHHHHHhCCC--eeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc-
Q psy8190 133 DNIENMICEVKKIGLETCL---TLGMLNENQAYRLKKVGLD--YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV- 205 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~---~~g~l~~e~l~~Lk~aG~~--~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~- 205 (348)
.++.++++.+.+.++.+.+ .+..++++.++.|++ |.. .+.+++|| ++++++.+++++++++.++.++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999887663332 344567899999999 543 78889999 799999999999999999999999996
Q ss_pred -CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC-CCCHHHHHHHH
Q psy8190 206 -GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTI 269 (348)
Q Consensus 206 -G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~-~~~~~~~~~~~ 269 (348)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||....+ ..++++..+.+
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHH
Confidence 788889999999 999999999999999998 899999999999999986443 45655544433
No 78
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.90 E-value=1.3e-22 Score=177.34 Aligned_cols=183 Identities=22% Similarity=0.366 Sum_probs=152.2
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC-----CCEEEEeccCCCCCcccHHHHHHHHHH
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-----ATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
.+.+ |++|+.+|.||..+... . . ....+++++.++++.+.+.| +..++++||. +...+.+.+.++++.
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~--~~~~~~~~~~~~~~~ 76 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGT--PTLLSPEQLEELLEA 76 (216)
T ss_pred EEEe-cCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCC--CCCCCHHHHHHHHHH
Confidence 4566 99999999999988753 1 1 33578999999998886544 4667888873 333333457777777
Q ss_pred HHhc-----CcE--EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC-CeeeEe
Q psy8190 142 VKKI-----GLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCG 212 (348)
Q Consensus 142 i~~~-----~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G-~~i~~~ 212 (348)
+++. ... +.++.+.++++.++.|+++|++++.+++++ ++++++.++++.++++++++++.++++| +.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~ 156 (216)
T smart00729 77 IREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTD 156 (216)
T ss_pred HHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEe
Confidence 7764 233 345567899999999999999999999999 7999999999999999999999999999 899999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCC
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 258 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~ 258 (348)
+++|+ +++.+++.+.++++.+++ ++.+.++++.|.||||++..+
T Consensus 157 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 157 LIVGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 99999 799999999999999998 899999999999999998754
No 79
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.90 E-value=1.6e-21 Score=189.84 Aligned_cols=213 Identities=18% Similarity=0.277 Sum_probs=170.3
Q ss_pred ceEEEEEEEeecCCCC-CCCCcCCCCC-------CCCCC------CccccccCHHHHHHHHHHHHhCC--CCEE--EEec
Q psy8190 61 EIELAVLLSIKTGGCT-EDCGYCPQST-------HYNTE------ITATKILSIESVITAAQKAKSDG--ATRF--CMGA 122 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~-~~C~fC~~~~-------~~~~~------~~~~~~~~~eei~~~~~~~~~~G--~~~i--~l~g 122 (348)
.|.+.+++.- --.|| .+|.||.-.- .|... ..+++.-+..++...++++...| ++.| .|.|
T Consensus 65 gv~~v~vm~~-p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G 143 (522)
T TIGR01211 65 GVAVVAVMTS-PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG 143 (522)
T ss_pred CeEEEEEecC-CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC
Confidence 3555555443 56799 4799998521 12111 11344467789999999988876 4333 5666
Q ss_pred cCCCCCcccHHHHHHHHHHHHhc-----------------------------CcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy8190 123 AWRELKDRDLDNIENMICEVKKI-----------------------------GLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 123 g~~~~~~~~~~~~~~l~~~i~~~-----------------------------~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
| +++..+.++...+++.+.+. ++.+.++|..++++.++.|+++|+++|+
T Consensus 144 G--Tft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVs 221 (522)
T TIGR01211 144 G--TFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVE 221 (522)
T ss_pred C--CcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 6 34456777777766655431 2334467889999999999999999999
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHh---cCCCCCeeecccccc
Q psy8190 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLAN---LNPYPESVPINNLVQ 248 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~---l~~~~~~i~~~~l~P 248 (348)
+|+|| ++++++.++|+|+.++..++++.++++|+.++.++|+|+ |+|.++..++++.+.+ ++ |+.+.++++.+
T Consensus 222 lGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V 299 (522)
T TIGR01211 222 LGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLV 299 (522)
T ss_pred EECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEeccee
Confidence 99999 899999999999999999999999999999999999999 9999999999999874 87 99999999999
Q ss_pred cCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy8190 249 IKGTPLYG------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 249 ~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
.+||+|++ ..+++.++.+++++.+...+|.
T Consensus 300 ~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 300 TRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred eCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 99999974 5678999999999999999985
No 80
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.89 E-value=1.6e-21 Score=180.34 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=158.1
Q ss_pred cCCCceEEEEEEEeecCCCCC----CCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCC------EEEEeccCC
Q psy8190 57 FDANEIELAVLLSIKTGGCTE----DCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GAT------RFCMGAAWR 125 (348)
Q Consensus 57 ~~g~~v~~~~~i~i~t~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~------~i~l~gg~~ 125 (348)
+.|.......+|.. |+|||+ +|.||++.... ++..+++.+.++++.+.+. +.+ .++.+|+..
T Consensus 8 ~~~~~~~~~~~i~~-srGC~~~~~g~C~FC~~~~~~------~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~ 80 (313)
T TIGR01210 8 LRGFPGKSLTIILR-TRGCYWAREGGCYMCGYLADS------SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFL 80 (313)
T ss_pred cCCcccceEEEEEe-CCCCCCCCCCcCccCCCCCCC------CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcC
Confidence 33443444445566 999999 59999865421 2235889999998877643 322 234444444
Q ss_pred CCCcccHHHHHHHHHHHHhcC----cEEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHh-ccCCCCCHHHHHHH
Q psy8190 126 ELKDRDLDNIENMICEVKKIG----LETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYG-DIISTRDYENRLNT 198 (348)
Q Consensus 126 ~~~~~~~~~~~~l~~~i~~~~----~~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~-~i~~~~~~~~~~~~ 198 (348)
++...+.+.+.++++.+++.+ +.+.+++..+++|.++.|+++|++ +|++|+|| ++++++ .++++++.++..++
T Consensus 81 D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~a 160 (313)
T TIGR01210 81 DDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRA 160 (313)
T ss_pred CcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHH
Confidence 555566788889998888753 345567889999999999999998 89999999 899995 89999999999999
Q ss_pred HHHHHHcCCeeeEeEeeec-C----CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHH
Q psy8190 199 LKNVRNVGINICCGGIIGL-S----ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIR 267 (348)
Q Consensus 199 i~~~~~~G~~i~~~~i~Gl-g----et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~ 267 (348)
++.++++|+.+..++|+|+ + |+.+++.++++.+..++ ++++++++.|.|||+++. ..++..+..+.
T Consensus 161 i~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~---~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e 237 (313)
T TIGR01210 161 AELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT---DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAE 237 (313)
T ss_pred HHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC---CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999999999999998 6 45567777888888774 799999999999998753 34565556666
Q ss_pred HHHHHHH
Q psy8190 268 TIAVARI 274 (348)
Q Consensus 268 ~~a~~R~ 274 (348)
++..++.
T Consensus 238 ~l~e~~~ 244 (313)
T TIGR01210 238 VLKEAKK 244 (313)
T ss_pred HHHHHHh
Confidence 6555553
No 81
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.3e-21 Score=183.40 Aligned_cols=187 Identities=14% Similarity=0.250 Sum_probs=156.6
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccH----HHHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDL----DNIENMI 139 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~----~~~~~l~ 139 (348)
..+.+.| +.||++.|+||-.+.. ++ +.+.+++++|+++++.+.+.|+++|.|.|-..+.+..+. ..+.+++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~--RG--~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA--RG--KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred eEEEEEh-hcCcCCCCCeeeeecc--CC--CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHH
Confidence 4557788 9999999999998864 22 223478999999999999999999999987554444443 4588888
Q ss_pred HHHHhc-Cc-EEE---EecCCCCHHHHHHHHHh-C-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc--CCee
Q psy8190 140 CEVKKI-GL-ETC---LTLGMLNENQAYRLKKV-G-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 209 (348)
Q Consensus 140 ~~i~~~-~~-~i~---~~~g~l~~e~l~~Lk~a-G-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i 209 (348)
+.+.+. |. .+. .+|-.++++.++.+++. - +..+.+.+|| ++++|+.|+|+++.++.++.++.+++. ++.+
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceE
Confidence 888773 32 222 35778899999999985 3 5667889999 899999999999999999999999974 5789
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC
Q psy8190 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 257 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~ 257 (348)
++++|+|+ |||.||+.++++++++.+ ++.+.++.|.|.||||-+..
T Consensus 299 ~tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~ 345 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALM 345 (437)
T ss_pred eccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccC
Confidence 99999999 999999999999999999 99999999999999998854
No 82
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.86 E-value=4.1e-20 Score=160.85 Aligned_cols=220 Identities=20% Similarity=0.254 Sum_probs=172.4
Q ss_pred HHHHHhhcCCCceEEEEEEEeecCCCCC--------CCCcCCCCCCCCCCCccccccCH-HHHHHHHHHHHh-CC-CCE-
Q psy8190 50 QKVHRKYFDANEIELAVLLSIKTGGCTE--------DCGYCPQSTHYNTEITATKILSI-ESVITAAQKAKS-DG-ATR- 117 (348)
Q Consensus 50 ~~~~~~~~~g~~v~~~~~i~i~t~~C~~--------~C~fC~~~~~~~~~~~~~~~~~~-eei~~~~~~~~~-~G-~~~- 117 (348)
..+ ++.| |.+|+-. .+.. +-.||+ .|.||+..........+ ..+. +++.++++.+.+ .+ .+.
T Consensus 13 ~~l-r~~f-g~Kv~Kv-~ld~-GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~--~~~i~~Q~~~q~~~~~kK~~~~kyi 86 (312)
T COG1242 13 DYL-REKF-GEKVFKV-TLDG-GFSCPNRDGTIGRGGCTFCSVAGSGDFAGQP--KISIAEQFKEQAERMHKKWKRGKYI 86 (312)
T ss_pred HHH-HHHh-CCeeEEE-eccC-CCCCCCCCCcccCCceeeecCCCCCccccCc--ccCHHHHHHHHHHHHHHhhcCCcEE
Confidence 444 5568 8888764 4566 888998 49999876643222112 2344 455555554443 22 233
Q ss_pred EEEeccCCCCCcccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHHHHHhCC---CeeeccCCC-CHHHHhccCCC
Q psy8190 118 FCMGAAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLKKVGL---DYYNHNLDT-SPKLYGDIIST 189 (348)
Q Consensus 118 i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~Lk~aG~---~~i~~g~et-~~e~l~~i~~~ 189 (348)
++|+.. +.+..+.+.+.++.+..-.. |+.+.+.|..++++.++.|.+..= -++.+|+|| .+++++.|+|+
T Consensus 87 aYFQ~~--TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRg 164 (312)
T COG1242 87 AYFQAY--TNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRG 164 (312)
T ss_pred EEEecc--ccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcc
Confidence 588876 33567889999999766542 667777889999999998887732 346679999 69999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCH
Q psy8190 190 RDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDP 262 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~ 262 (348)
|+++.+.++++.+++.|+++|+++|+|| ||+.++.+++++.+..++ ++.|.+++++..+||||.. ....|.
T Consensus 165 Hd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~ 242 (312)
T COG1242 165 HDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLSL 242 (312)
T ss_pred cchHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceeccH
Confidence 9999999999999999999999999999 999999999999999999 9999999999999999964 457899
Q ss_pred HHHHHHHHHHHHHCCCC
Q psy8190 263 LEFIRTIAVARITMPTS 279 (348)
Q Consensus 263 ~~~~~~~a~~R~~lp~~ 279 (348)
+++..+++-+-..+|..
T Consensus 243 eeYv~~~~d~le~lpp~ 259 (312)
T COG1242 243 EEYVELVCDQLEHLPPE 259 (312)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999999887777763
No 83
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.83 E-value=5.7e-19 Score=152.38 Aligned_cols=179 Identities=25% Similarity=0.447 Sum_probs=142.8
Q ss_pred EeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--C
Q psy8190 69 SIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--G 146 (348)
Q Consensus 69 ~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~ 146 (348)
.+ +++|+++|.||......... ... ....+++...+......+...+.++|| + |... ..+.++++.+++. +
T Consensus 2 ~~-~~~C~~~C~fC~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~gg-e-p~~~--~~~~~~i~~~~~~~~~ 74 (204)
T cd01335 2 EL-TRGCNLNCGFCSNPASKGRG-PES-PPEIEEILDIVLEAKERGVEVVILTGG-E-PLLY--PELAELLRRLKKELPG 74 (204)
T ss_pred cc-CCccCCcCCCCCCCCCCCCC-ccc-cccHHHHHHHHHHHHhcCceEEEEeCC-c-CCcc--HhHHHHHHHHHhhCCC
Confidence 34 89999999999988754222 111 111145666666666678888888777 3 3222 2788888888876 6
Q ss_pred cEEEEe--cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccC-CCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCH
Q psy8190 147 LETCLT--LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII-STRDYENRLNTLKNVRNVGINICCGGIIGL-SESR 221 (348)
Q Consensus 147 ~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~-~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~ 221 (348)
+.+.+. ...++++.++.|+++|++++.+++|+ ++..++.++ +..++++++++++.+++.|+.+.+.+++|+ +++.
T Consensus 75 ~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 75 FEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred ceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChh
Confidence 666544 44558999999999999999999999 788999888 678999999999999999999999999999 7777
Q ss_pred HHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy8190 222 DQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 222 e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+++.++++.+.+... ++.+.+++|.|.||||++
T Consensus 155 ~~~~~~~~~l~~~~~-~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRS-PDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcC-cchhhhhhhcccCCCeee
Confidence 999999999988853 688999999999999998
No 84
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.80 E-value=5.5e-18 Score=157.01 Aligned_cols=217 Identities=15% Similarity=0.230 Sum_probs=164.1
Q ss_pred CCceEEEEEEEeecCCCCC-CCCcCCCCC------CCCCCC------ccccccCHHHHHHHHHHHHhCCCCE----EEEe
Q psy8190 59 ANEIELAVLLSIKTGGCTE-DCGYCPQST------HYNTEI------TATKILSIESVITAAQKAKSDGATR----FCMG 121 (348)
Q Consensus 59 g~~v~~~~~i~i~t~~C~~-~C~fC~~~~------~~~~~~------~~~~~~~~eei~~~~~~~~~~G~~~----i~l~ 121 (348)
...|.+.+++-- -.+||+ +|.||...- .+.... ...+.-+-.++...++++...|-.. +.|-
T Consensus 62 ~sgvaVVaVmt~-p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliim 140 (515)
T COG1243 62 ISGVAVVAVMTS-PHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 (515)
T ss_pred cccceEEEEecC-CCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 345665554433 789997 999999772 221100 0111235578888888888887432 3444
Q ss_pred ccCCCCCcccHHHHHHHHHHHHh-----------------------cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 122 AAWRELKDRDLDNIENMICEVKK-----------------------IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 122 gg~~~~~~~~~~~~~~l~~~i~~-----------------------~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
|| +. +..+.++-.++++.+.+ .++.+.+.|.-.+++.++.|++.|+++|.+|+||
T Consensus 141 GG-TF-ta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQS 218 (515)
T COG1243 141 GG-TF-TALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQS 218 (515)
T ss_pred cc-cc-cCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeee
Confidence 55 22 23444444444433322 1355666788899999999999999999999999
Q ss_pred -CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCC-CCCeeecccccccCCCCCC
Q psy8190 179 -SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNP-YPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 179 -~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~-~~~~i~~~~l~P~~gT~l~ 255 (348)
.++++++.+|+|+++++.++.+.++++|++++.++|.|| |.+.+--++++..+-+... .||.+.++|....+||+|+
T Consensus 219 iyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly 298 (515)
T COG1243 219 IYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELY 298 (515)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHH
Confidence 799999999999999999999999999999999999999 9998877777766666543 5899999999999999997
Q ss_pred C------CCCCCHHHHHHHHHHHHHHCCC
Q psy8190 256 G------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 256 ~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
+ +.+.+.++..++++.+..++|.
T Consensus 299 ~mwk~G~Ykpy~~EEaVeli~~i~~~~p~ 327 (515)
T COG1243 299 EMWKRGLYKPYTTEEAVELIVEIYRLEPK 327 (515)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5 5789999999999998888887
No 85
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.79 E-value=2.2e-17 Score=154.98 Aligned_cols=206 Identities=17% Similarity=0.273 Sum_probs=156.2
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. .+++ |+.|+.+|.||...............++.+++.+.++.+.+.|++.|.|+|| ++... ..+
T Consensus 4 ~~-gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGG-EPll~---~~l 76 (334)
T TIGR02666 4 RF-GRRIDYL-RISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGG-EPLLR---KDL 76 (334)
T ss_pred CC-CCccCeE-EEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECc-ccccc---CCH
Confidence 45 6777654 4677 9999999999987641110111233589999999999998999999999987 43322 357
Q ss_pred HHHHHHHHh-cCc-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCe-e
Q psy8190 136 ENMICEVKK-IGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGIN-I 209 (348)
Q Consensus 136 ~~l~~~i~~-~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~-i 209 (348)
.++++.+++ .++ .+.+ +.|.+..+.++.|+++|+++|.+++++ +++.++.+.+ +.++++++++++.++++|+. +
T Consensus 77 ~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v 156 (334)
T TIGR02666 77 VELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPV 156 (334)
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 777777776 355 5554 466777789999999999999999999 7999999985 57999999999999999996 8
Q ss_pred eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC-CCCCCCHHHHHHHHHH
Q psy8190 210 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSSILDPLEFIRTIAV 271 (348)
Q Consensus 210 ~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~-~~~~~~~~~~~~~~a~ 271 (348)
.+.+++..|.+.+++.+.++++++++ + .+.+..|+|..++.-+ .....+.+++++.++.
T Consensus 157 ~in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~ 216 (334)
T TIGR02666 157 KLNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQ 216 (334)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHh
Confidence 87765545889999999999999997 4 4677788888766432 2234566666666543
No 86
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.79 E-value=2.7e-17 Score=153.87 Aligned_cols=205 Identities=19% Similarity=0.255 Sum_probs=154.5
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. .+++ |+.|+.+|.||..... ........++.+|+.+.++.+.+.|++.|.|+|| ++.. ...+
T Consensus 8 ~~-gr~i~~l-~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGG-EPll---r~dl 78 (329)
T PRK13361 8 SF-GRTVTYL-RLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGG-EPLV---RRGC 78 (329)
T ss_pred CC-CCccCeE-EEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECc-CCCc---cccH
Confidence 45 6777644 4677 9999999999984421 1112233589999999999888899999999987 4332 2457
Q ss_pred HHHHHHHHhcC-c-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eee
Q psy8190 136 ENMICEVKKIG-L-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NIC 210 (348)
Q Consensus 136 ~~l~~~i~~~~-~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~ 210 (348)
.++++.+++.+ + .+.+ +.|.+..+.++.|+++|++++++++++ +++.|+.+++..+++++++.++.++++|+ .+.
T Consensus 79 ~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 79 DQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 78888887753 3 3432 346555678999999999999999999 79999999988899999999999999999 677
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC-CCCCCCCCHHHHHHHHHHH
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-LYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~-l~~~~~~~~~~~~~~~a~~ 272 (348)
...++--|++.+++.+.++++.+++ ++ +.+..++|..+.. ......++.+++.+.+...
T Consensus 159 in~v~~~g~N~~ei~~~~~~~~~~g--i~-~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~ 218 (329)
T PRK13361 159 LNAVILRGQNDDEVLDLVEFCRERG--LD-IAFIEEMPLGEIDERRRARHCSSDEVRAIIETR 218 (329)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcC--Ce-EEEEecccCCCccchhhccCcCHHHHHHHHHHh
Confidence 6655433899999999999999998 64 5577788875433 1223456777777766443
No 87
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.78 E-value=3.5e-18 Score=168.28 Aligned_cols=186 Identities=20% Similarity=0.318 Sum_probs=140.4
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEE-------EEeccCCCCCcccHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRF-------CMGAAWRELKDRDLDNIEN 137 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i-------~l~gg~~~~~~~~~~~~~~ 137 (348)
...+++ ++|||.+|.||+.+..+ .++.++++.++++++...+.|...+ ++.++ .. ...+...+
T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~-~~---~~~~~~~~ 268 (490)
T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGS-PA---LNDEKRFE 268 (490)
T ss_pred EEEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCC-cc---ccchhhcc
Confidence 356788 99999999999988753 2344678888888887766665553 22222 10 01122222
Q ss_pred HH-HHHHhcC------cEEEE---ecCCCC-HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHH-HHHHHHH
Q psy8190 138 MI-CEVKKIG------LETCL---TLGMLN-ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLN-TLKNVRN 204 (348)
Q Consensus 138 l~-~~i~~~~------~~i~~---~~g~l~-~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~-~i~~~~~ 204 (348)
.+ ..+.+.. +++.+ .+..++ ++.++.++++|..++.+|+|| ++++++.++++++.++..+ +++.+++
T Consensus 269 ~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~ 348 (490)
T COG1032 269 LLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKE 348 (490)
T ss_pred cchHHHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 22 2233221 23332 355777 889999999999999999999 8999999999999999995 9999999
Q ss_pred cCCeeeEeEeeec-CCCHHHHHHH---HHHHHhcCCCCC-eeecccccccCCCCCCCCCCCCH
Q psy8190 205 VGINICCGGIIGL-SESRDQRAEL---IFQLANLNPYPE-SVPINNLVQIKGTPLYGSSILDP 262 (348)
Q Consensus 205 ~G~~i~~~~i~Gl-get~e~~~~~---l~~l~~l~~~~~-~i~~~~l~P~~gT~l~~~~~~~~ 262 (348)
+|+.+..++|+|+ |||.+++..+ ++++.+++ +. .+.+++|+|.|||++++......
T Consensus 349 ~~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~--~~~~~~~~~~~p~p~t~~~~~~~~~~ 409 (490)
T COG1032 349 HGLRVKLYFIVGLPGETEEDVKETIELAKFIKKLG--PKLYVSPSPFVPLPGTPLQEMPKLEN 409 (490)
T ss_pred CCceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhC--ccceEEEeeeeCCCCCchhhcccccc
Confidence 9999999999999 9999999998 68888887 54 78999999999999988654333
No 88
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.78 E-value=3.9e-17 Score=154.64 Aligned_cols=205 Identities=17% Similarity=0.272 Sum_probs=156.3
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. -+++ |..|+.+|.||......... .....++.+++.+.++.+.+.|++.|.|+|| + |.. ...+
T Consensus 52 ~~-gr~~~~l-risv-T~~CNlrC~yC~~~~~~~~~-~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGG-E-Pll--r~dl 123 (373)
T PLN02951 52 SF-GRRHNYL-RISL-TERCNLRCQYCMPEEGVELT-PKSHLLSQDEIVRLAGLFVAAGVDKIRLTGG-E-PTL--RKDI 123 (373)
T ss_pred CC-CCcccEE-EEEE-cCCcCcCCCCCCCCcCCCCC-CccccCCHHHHHHHHHHHHHCCCCEEEEECC-C-Ccc--hhhH
Confidence 45 5655543 4677 99999999999865321111 1223489999999999888899999999987 4 322 2357
Q ss_pred HHHHHHHHhc-CcE-EEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eee
Q psy8190 136 ENMICEVKKI-GLE-TCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NIC 210 (348)
Q Consensus 136 ~~l~~~i~~~-~~~-i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~ 210 (348)
.++++.+++. ++. +.+ ++|.+..+.++.|+++|+++|.+++++ +++.|+.+.+.+.++.+++.++.++++|+ .+.
T Consensus 124 ~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vk 203 (373)
T PLN02951 124 EDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVK 203 (373)
T ss_pred HHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 8888888874 653 443 467666788999999999999999999 79999999887889999999999999998 466
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 271 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~ 271 (348)
..+.+-.|.+.+++.+.++++++.+ -.+.+..|+|..+++.......+.++.++.+..
T Consensus 204 in~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~ 261 (373)
T PLN02951 204 VNCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQ 261 (373)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHH
Confidence 6544333789999999999999986 467888899999887654445667777776654
No 89
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.78 E-value=4.3e-17 Score=141.79 Aligned_cols=192 Identities=22% Similarity=0.363 Sum_probs=152.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhcCc--E
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGL--E 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~~~--~ 148 (348)
+..|..+|.||+..... +- .++++|-.+.++....+|.+.|.|++-.. ++.+.....+.+.+++|++... .
T Consensus 77 G~~CTR~C~FC~V~~g~-----P~-~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~ 150 (306)
T COG0320 77 GDICTRRCRFCDVKTGR-----PN-PLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTT 150 (306)
T ss_pred cchhccCCCccccCCCC-----CC-CCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCce
Confidence 78999999999987631 11 37888999999888999999999987532 3445677899999999998643 3
Q ss_pred EEE-ecCC-CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcC--CeeeEeEeeecCCCHHHH
Q psy8190 149 TCL-TLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG--INICCGGIIGLSESRDQR 224 (348)
Q Consensus 149 i~~-~~g~-l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~~~i~Glget~e~~ 224 (348)
+.+ .+.. =..+.++.+.++|.+-+++++||.++++..++++.+|+.-++.++.+++.+ +.+.+++|+|||||.+++
T Consensus 151 iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev 230 (306)
T COG0320 151 IEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEV 230 (306)
T ss_pred EEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHH
Confidence 332 2221 256789999999999999999999999999999999999999999999998 778899999999999999
Q ss_pred HHHHHHHHhcCCCCCeeeccccc-ccC-CCCCCCCCCCCHHHHHHHHHHHH
Q psy8190 225 AELIFQLANLNPYPESVPINNLV-QIK-GTPLYGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 225 ~~~l~~l~~l~~~~~~i~~~~l~-P~~-gT~l~~~~~~~~~~~~~~~a~~R 273 (348)
.++++.|++.+ ++.+.+..|. |.. .-|... -.+++++..+-.++.
T Consensus 231 ~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~r--yv~PeeF~~~~~~a~ 277 (306)
T COG0320 231 IEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQR--YVTPEEFDELEEVAE 277 (306)
T ss_pred HHHHHHHHHcC--CCEEEeccccCCccccCCcee--ccCHHHHHHHHHHHH
Confidence 99999999999 9999987654 432 123322 345555555444444
No 90
>PRK00955 hypothetical protein; Provisional
Probab=99.77 E-value=2.7e-17 Score=161.61 Aligned_cols=221 Identities=13% Similarity=0.179 Sum_probs=155.4
Q ss_pred cCCCCCHHHHHHhhcCChHHHHHHHHHHHH--hhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHH
Q psy8190 25 QSLIWKLDEVINLFNLPFNDLLFRAQKVHR--KYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIES 102 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll~~~~~~l~~~A~~~~~--~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 102 (348)
+...||.+|...+++.|+....+....-.. ..+ +.|. ..|.+ ++||+..|+||..+.+.+. .++.+++++
T Consensus 255 p~~~l~~~e~d~~y~lpy~r~~hp~y~~~g~ipa~--~~i~--~sI~i-~RGC~g~CSFCaIp~~rGr---~~rSRs~es 326 (620)
T PRK00955 255 PAPPLTQEELDEVYDLPYTRTYHPSYEEKGGIPAI--EEVK--FSITS-HRGCFGGCSFCAITFHQGR---FIQSRSQES 326 (620)
T ss_pred CCCCCChhhhhhccCCCcccCcchhhccCCCCCce--eeEE--EEEEe-eCCCCCCCCCCCeecccCC---cceecCHHH
Confidence 355689999999999886544433332110 011 2333 34667 9999999999998875322 334589999
Q ss_pred HHHHHHHHHhC-CCCEEEE-eccCCCCC----------------------------cccHHHHHHHHHHHHhc-Cc-EEE
Q psy8190 103 VITAAQKAKSD-GATRFCM-GAAWRELK----------------------------DRDLDNIENMICEVKKI-GL-ETC 150 (348)
Q Consensus 103 i~~~~~~~~~~-G~~~i~l-~gg~~~~~----------------------------~~~~~~~~~l~~~i~~~-~~-~i~ 150 (348)
|+++++.+.+. |++.+.. .||.+... ..+...+.++++++++. ++ .+.
T Consensus 327 Iv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~ 406 (620)
T PRK00955 327 ILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVF 406 (620)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCCccccccccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCceEEE
Confidence 99999998876 7877631 33311100 01235789999999874 44 344
Q ss_pred EecC----C----CCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCCCC--HHHHHHH-HHHHHHcCCe--eeEeEee
Q psy8190 151 LTLG----M----LNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIISTRD--YENRLNT-LKNVRNVGIN--ICCGGII 215 (348)
Q Consensus 151 ~~~g----~----l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~~~--~~~~~~~-i~~~~~~G~~--i~~~~i~ 215 (348)
++.| . .+++.++.|.+.++. .+.+++|| ++++++.++++.. +++.++. .+.++++|+. +..++|+
T Consensus 407 isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIv 486 (620)
T PRK00955 407 IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMS 486 (620)
T ss_pred eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEE
Confidence 4433 2 234578888886544 68899999 8999999988631 2333333 3455678875 8899999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy8190 216 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 216 Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
|+ |||.+|+.++++++++++ ++.+.++.|.|.|||+-.
T Consensus 487 GfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~At 525 (620)
T PRK00955 487 SHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLST 525 (620)
T ss_pred ECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcchh
Confidence 99 999999999999999998 899999999999998754
No 91
>PRK01254 hypothetical protein; Provisional
Probab=99.77 E-value=2.2e-17 Score=161.15 Aligned_cols=221 Identities=15% Similarity=0.229 Sum_probs=163.1
Q ss_pred CCCCCHHHHHHhhcCChHHHHHHHHHHH-HhhcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHH
Q psy8190 26 SLIWKLDEVINLFNLPFNDLLFRAQKVH-RKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 104 (348)
Q Consensus 26 ~~~ls~~e~~~Ll~~~~~~l~~~A~~~~-~~~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 104 (348)
-..||.+|...++++|+....+-...-. -..+ +.+. ..|.+ ++||+.+|+||+.+.+.+. .++.+++++|+
T Consensus 337 ~~plt~~ElD~vy~LPy~R~~HP~Y~~~~ipA~--e~i~--~sV~i-~RGC~g~CSFCaI~~hqGr---~irSRS~esIL 408 (707)
T PRK01254 337 AIPLSTEEMDSVFALPYARVPHPAYGKARIPAY--DMIR--FSVNI-MRGCFGGCSFCSITEHEGR---IIQSRSEESII 408 (707)
T ss_pred cCCCCHHHHHHHhCCCcccccCcccccCCCCch--hheE--EEEEE-ccCCCCCCCccccccccCC---eeeeCCHHHHH
Confidence 4468999999999987543332222211 0111 2232 34667 9999999999998876422 24458999999
Q ss_pred HHHHHHHhC--CCCEEE--EeccCCCCCc---------------------------ccHHHHHHHHHHHHhc-Cc-EEEE
Q psy8190 105 TAAQKAKSD--GATRFC--MGAAWRELKD---------------------------RDLDNIENMICEVKKI-GL-ETCL 151 (348)
Q Consensus 105 ~~~~~~~~~--G~~~i~--l~gg~~~~~~---------------------------~~~~~~~~l~~~i~~~-~~-~i~~ 151 (348)
++++.+.+. |++.+. ++|-..+.+. .+...+.++++++++. ++ .+.+
T Consensus 409 ~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI 488 (707)
T PRK01254 409 NEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILI 488 (707)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEE
Confidence 999999863 999987 5554222211 1235789999999873 44 3443
Q ss_pred ecC---C---CCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCC--CCHHHHHHHHHHHHH-cCC--eeeEeEeeec-
Q psy8190 152 TLG---M---LNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST--RDYENRLNTLKNVRN-VGI--NICCGGIIGL- 217 (348)
Q Consensus 152 ~~g---~---l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~--~~~~~~~~~i~~~~~-~G~--~i~~~~i~Gl- 217 (348)
..| . .+++.++.|.+.++. .+.+.+|+ ++++|+.|+++ .+++++.+.++.+++ .|. .+..++|+|+
T Consensus 489 ~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhP 568 (707)
T PRK01254 489 ASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHP 568 (707)
T ss_pred EcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECC
Confidence 322 2 257899999988776 67889999 89999999986 688999999999876 564 5667999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccC---CCCCCC
Q psy8190 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIK---GTPLYG 256 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~---gT~l~~ 256 (348)
|+|.+|+.++++++++++ .+.-.++.|+|.| +|.|+.
T Consensus 569 GeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 569 GTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHHHh
Confidence 999999999999999998 7788889999999 888764
No 92
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.77 E-value=7.8e-18 Score=140.93 Aligned_cols=157 Identities=20% Similarity=0.365 Sum_probs=119.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh--
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-- 144 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-- 144 (348)
|++ +++|+++|.||..+..... .....++++++++.++.+ ...|+..+.++|| + |... ..+.+++..+.+
T Consensus 1 i~~-~~~C~~~C~fC~~~~~~~~--~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~g-e-p~~~--~~~~~~~~~~~~~~ 73 (166)
T PF04055_consen 1 IET-TRGCNLNCSFCYYPRSRRK--NKPREMSPEEILEEIKELKQDKGVKEIFFGGG-E-PTLH--PDFIELLELLRKIK 73 (166)
T ss_dssp EEE-ESEESS--TTTSTTTTCCT--CGCEECHHHHHHHHHHHHHHHTTHEEEEEESS-T-GGGS--CHHHHHHHHHHHCT
T ss_pred CEE-CcCcCccCCCCCCCccCCC--cccccCCHHHHHHHHHHHhHhcCCcEEEEeec-C-CCcc--hhHHHHHHHHHHhh
Confidence 355 8999999999998874111 223358999999999999 5778777788776 2 3221 233444444443
Q ss_pred -cCcEEEE--ecCCCCHHHHHHHHHhCCCeeeccCCC-CHH-HHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-C
Q psy8190 145 -IGLETCL--TLGMLNENQAYRLKKVGLDYYNHNLDT-SPK-LYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-S 218 (348)
Q Consensus 145 -~~~~i~~--~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e-~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-g 218 (348)
.+..+.+ +....+++.++.|+++|++++.++++| +++ +.+.+++++++++++++++.++++|+.....+|+|+ |
T Consensus 74 ~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~ 153 (166)
T PF04055_consen 74 KRGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPG 153 (166)
T ss_dssp CTTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTT
T ss_pred ccccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC
Confidence 2555543 444556999999999999999999999 788 888888889999999999999999998677778888 9
Q ss_pred CCHHHHHHHHHHH
Q psy8190 219 ESRDQRAELIFQL 231 (348)
Q Consensus 219 et~e~~~~~l~~l 231 (348)
+|.+++.++++++
T Consensus 154 ~~~~e~~~~~~~i 166 (166)
T PF04055_consen 154 ENDEEIEETIRFI 166 (166)
T ss_dssp TSHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcC
Confidence 9999999998875
No 93
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.76 E-value=1.9e-16 Score=148.56 Aligned_cols=206 Identities=18% Similarity=0.272 Sum_probs=154.7
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |+.+.+. .+++ |.+|+.+|.||....... .......++.+++.+.++.+.+.|++.|.|+|| ++... ..+
T Consensus 11 ~~-~r~~~~l-~i~v-T~~Cnl~C~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGG-EPll~---~~l 82 (331)
T PRK00164 11 RF-GRKFTYL-RISV-TDRCNFRCTYCMPEGYLP-FLPKEELLSLEEIERLVRAFVALGVRKVRLTGG-EPLLR---KDL 82 (331)
T ss_pred CC-CCccCeE-EEEE-cCCcCcCCCCCCCccCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEECC-CCcCc---cCH
Confidence 45 6777644 4677 999999999998654211 112334589999999999888889999999987 43322 457
Q ss_pred HHHHHHHHhc--CcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC-eee
Q psy8190 136 ENMICEVKKI--GLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NIC 210 (348)
Q Consensus 136 ~~l~~~i~~~--~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~-~i~ 210 (348)
.++++.+++. ...+.+ +.|.+..+.++.|+++|++++.+++++ +++.++.+++..++++++++++.++++|+ .+.
T Consensus 83 ~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~ 162 (331)
T PRK00164 83 EDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVK 162 (331)
T ss_pred HHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 7888888764 234443 346555678999999999999999999 79999999988999999999999999998 777
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC-CCCCCCCCHHHHHHHHHHH
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-LYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~-l~~~~~~~~~~~~~~~a~~ 272 (348)
..+++-.|.+.+++.+.++++++++ + .+.+..|+|.++.. +......+.+++.+.+...
T Consensus 163 i~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (331)
T PRK00164 163 VNAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAER 222 (331)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhc
Confidence 7654433888899999999999987 4 56777788876543 3333446677777766543
No 94
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.74 E-value=3.1e-16 Score=145.22 Aligned_cols=202 Identities=18% Similarity=0.268 Sum_probs=151.0
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+... .+++ |+.|+.+|.||...... . .....++.+++.+.++.+...|++.|.|+|| ++... ..+
T Consensus 4 ~~-gr~~~~l-~i~v-T~~CNl~C~yC~~~~~~-~--~~~~~ls~eei~~~i~~~~~~gi~~I~~tGG-EPll~---~~l 73 (302)
T TIGR02668 4 RF-GRPVTSL-RISV-TDRCNLSCFYCHMEGED-R--SGGNELSPEEIERIVRVASEFGVRKVKITGG-EPLLR---KDL 73 (302)
T ss_pred CC-CCccCeE-EEEE-cccccCCCCCCCccccC-C--CccCcCCHHHHHHHHHHHHHcCCCEEEEECc-ccccc---cCH
Confidence 35 6666554 5677 99999999999876421 1 1123589999999888888889999999987 43222 346
Q ss_pred HHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeE
Q psy8190 136 ENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICC 211 (348)
Q Consensus 136 ~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~ 211 (348)
.++++.+++.++ .+.+ +.|.+..+.++.|+++|+++|++++++ +++.++.+++..++++++++++.++++|+. +..
T Consensus 74 ~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i 153 (302)
T TIGR02668 74 IEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKL 153 (302)
T ss_pred HHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 778888887665 5554 356666788999999999999999999 799999998888999999999999999985 776
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-CCCCCCCCCHHHHHHHHH
Q psy8190 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIA 270 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-~l~~~~~~~~~~~~~~~a 270 (348)
.+++--|++.+++.+.++++++++ . .+.+..++|.... ..+.....+..++...+.
T Consensus 154 ~~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~ 210 (302)
T TIGR02668 154 NMVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELE 210 (302)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHH
Confidence 655433899999999999999987 4 4677777876532 122222345555554443
No 95
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.71 E-value=1.6e-15 Score=137.83 Aligned_cols=205 Identities=18% Similarity=0.317 Sum_probs=155.3
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.| |..+.+. -+++ |..|+++|.||-........ ++-..+++|||...++.+.+.|++.|-|+|| ++. -...+
T Consensus 5 ~~-gR~~~~L-RiSv-TdrCNfrC~YCm~eg~~~~~-~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGG-EPl---lR~dl 76 (322)
T COG2896 5 RF-GRPVRYL-RISV-TDRCNFRCTYCMPEGPLAFL-PKEELLSLEEIRRLVRAFAELGVEKVRLTGG-EPL---LRKDL 76 (322)
T ss_pred cc-CCEeceE-EEEE-ecCcCCcccccCCCCCcccC-cccccCCHHHHHHHHHHHHHcCcceEEEeCC-Cch---hhcCH
Confidence 35 5656544 3567 99999999999876522112 2212589999999999999999999999998 422 23567
Q ss_pred HHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeE
Q psy8190 136 ENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICC 211 (348)
Q Consensus 136 ~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~ 211 (348)
.++++.+++.++ ++.+ ++|.+.+..++.||+||+++|+++++| +++.|+.|.+...++++++.++.|.++|+. +..
T Consensus 77 ~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 77 DEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 788888876432 3444 478899999999999999999999999 899999998766799999999999999994 777
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC-CCCCCHHHHHHHHHH
Q psy8190 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-SSILDPLEFIRTIAV 271 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~-~~~~~~~~~~~~~a~ 271 (348)
++.+=-|-+.+++.+.++++...+ + .+.|-.|+|.....-+. ....+..+..+.+..
T Consensus 157 N~Vv~kgvNd~ei~~l~e~~~~~~--~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 157 NTVLMKGVNDDEIEDLLEFAKERG--A-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcC--C-ceEEEEEeecCcccchhhhccccHHHHHHHHHh
Confidence 644422678899999999999997 3 67777888775422111 134667777777666
No 96
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.68 E-value=9.3e-15 Score=139.55 Aligned_cols=175 Identities=22% Similarity=0.334 Sum_probs=138.7
Q ss_pred EEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy8190 64 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 64 ~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
+...+++ |+.|+.+|.||........ ....++.+++.+.++++.+.|+..|.|+|| +.. . ...+.++++.++
T Consensus 16 ~~l~i~i-T~~CNl~C~~C~~~~~~~~---~~~~~~~e~~~~ii~~~~~~g~~~v~~~GG-EPl-l--~~~~~~il~~~~ 87 (378)
T PRK05301 16 LWLLAEL-TYRCPLQCPYCSNPLDLAR---HGAELSTEEWIRVLREARALGALQLHFSGG-EPL-L--RKDLEELVAHAR 87 (378)
T ss_pred eEEEEEe-cCccCcCCCCCCCcccccc---ccCCCCHHHHHHHHHHHHHcCCcEEEEECC-ccC-C--chhHHHHHHHHH
Confidence 4456788 9999999999986542211 123588999999999888899999999987 432 2 245789999998
Q ss_pred hcCcEEE--EecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCC
Q psy8190 144 KIGLETC--LTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSE 219 (348)
Q Consensus 144 ~~~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glge 219 (348)
+.++.+. +|...++++.++.|+++|++.|.+++++ +++.++.++... +++.++++++.+++.|+.+.+.+++ ..+
T Consensus 88 ~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~~ 166 (378)
T PRK05301 88 ELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HRH 166 (378)
T ss_pred HcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ecC
Confidence 8766543 3444689999999999999999999999 689999887754 8999999999999999987655432 278
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 220 SRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 220 t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+.+++.+.++++.+++ ++.+.+..+.|.
T Consensus 167 N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 167 NIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 8999999999999998 888887766553
No 97
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=99.68 E-value=1.6e-16 Score=120.52 Aligned_cols=93 Identities=51% Similarity=0.818 Sum_probs=83.9
Q ss_pred ecccccccCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc
Q psy8190 242 PINNLVQIKGTPLYGS-SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT 320 (348)
Q Consensus 242 ~~~~l~P~~gT~l~~~-~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~ 320 (348)
++++|+|.+||||++. +.++.++.++++|++|+++|++.|++++|++.+.++.+..++.+|||+++.|..++|+.|...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 4788999999999987 789999999999999999999999999998776677888889999999998875668888888
Q ss_pred hHHHHHHHHcCCCc
Q psy8190 321 NDDSKLLKKLGINT 334 (348)
Q Consensus 321 ~~~~~~i~~~G~~p 334 (348)
.++.++++++||+|
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 88889999999986
No 98
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.67 E-value=1.2e-14 Score=135.17 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=150.4
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
.+.+.+ |++|+.+|.||......... ....++.+++.+.++.+.+. |+..|.|+|| .|...+.+.+.++++.++
T Consensus 89 rvll~v-T~~C~~~Cr~C~r~~~~~~~--~~~~l~~~e~~~~i~~i~~~~~I~~VilSGG--DPl~~~~~~L~~ll~~l~ 163 (321)
T TIGR03822 89 RVLLKP-VHVCPVYCRFCFRREMVGPE--GLGVLSPAELDAAFAYIADHPEIWEVILTGG--DPLVLSPRRLGDIMARLA 163 (321)
T ss_pred EEEEEe-cCCCCCcCcCCCchhhcCCc--ccCcCCHHHHHHHHHHHHhCCCccEEEEeCC--CcccCCHHHHHHHHHHHH
Confidence 345667 99999999999865432211 11235778888888887754 8999999998 344445678999999988
Q ss_pred hcC-c---EEEE-----ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE-e
Q psy8190 144 KIG-L---ETCL-----TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC-G 212 (348)
Q Consensus 144 ~~~-~---~i~~-----~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~-~ 212 (348)
+.+ + .++. ++..++++.++.|+++|. .+.+++++ .++.+ .++..++++.++++|+.+.. .
T Consensus 164 ~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~ 234 (321)
T TIGR03822 164 AIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQS 234 (321)
T ss_pred hCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEe
Confidence 753 2 3332 345689999999999995 47888888 43322 37899999999999998754 3
Q ss_pred -EeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc
Q psy8190 213 -GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR 280 (348)
Q Consensus 213 -~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~ 280 (348)
++-|..++.+++.+.++++.+++ +....++.+.|.+||..+ ..+.++..+++..++-.++...
T Consensus 235 vLl~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g~~ 298 (321)
T TIGR03822 235 VLLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISGLA 298 (321)
T ss_pred eEeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCCCc
Confidence 33377999999999999999998 888889999999998655 3778889999999998888743
No 99
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=99.67 E-value=1.1e-16 Score=121.25 Aligned_cols=92 Identities=38% Similarity=0.624 Sum_probs=70.7
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchH
Q psy8190 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTND 322 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~ 322 (348)
++.|+|.+|||+++..++++++.+++++++|+++|++.|++++|+.....+.+..++.+|||+++.|+|+.+.+.++.++
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~~ 81 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVDE 81 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHHH
Confidence 45699999999999999999999999999999999999999999876555577899999999999999864444488999
Q ss_pred HHHHHHHcCCCc
Q psy8190 323 DSKLLKKLGINT 334 (348)
Q Consensus 323 ~~~~i~~~G~~p 334 (348)
+.++|+++||+|
T Consensus 82 d~~~i~~lG~~P 93 (93)
T PF06968_consen 82 DIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHTT-ES
T ss_pred HHHHHHHcCCCC
Confidence 999999999987
No 100
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.67 E-value=2.3e-14 Score=138.23 Aligned_cols=206 Identities=17% Similarity=0.267 Sum_probs=153.8
Q ss_pred EEEeecCCCCCCCCcCCCCCC-C---CCCCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHH
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTH-Y---NTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~-~---~~~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
.+.+ +++|+.+|.||..... . ..+. ..+.++++|+++.++..... ++..|.|.|.|++ ....+...+.++
T Consensus 27 ~~~v-t~~CNl~C~yC~~~~~~~~esrpg~-~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEP--Ll~~e~~~~~l~ 102 (442)
T TIGR01290 27 HLAV-APACNIQCNYCNRKYDCANESRPGV-VSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDP--LANIGKTFQTLE 102 (442)
T ss_pred EEec-CCCCCCcCcCCCCCCCCCcCCCCcc-ccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCc--ccCccccHHHHH
Confidence 4566 9999999999985321 1 1111 12358999999999877653 5677888883343 234566778888
Q ss_pred HHHhc--CcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccC----------CCC-----CHHHHHHHHHH
Q psy8190 141 EVKKI--GLETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII----------STR-----DYENRLNTLKN 201 (348)
Q Consensus 141 ~i~~~--~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~----------~~~-----~~~~~~~~i~~ 201 (348)
.+++. ++.++++ .|.+.++.++.|.++|++.|.+++.+ +++.++.|. ++. .++..++.++.
T Consensus 103 ~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~ 182 (442)
T TIGR01290 103 LVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEK 182 (442)
T ss_pred HHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHH
Confidence 88774 7888775 67777999999999999999999999 799988762 122 15667899999
Q ss_pred HHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC--CCCCC--CCCCCCHHHHHHHHHHHHHHCC
Q psy8190 202 VRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK--GTPLY--GSSILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 202 ~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~--gT~l~--~~~~~~~~~~~~~~a~~R~~lp 277 (348)
+.+.|+.+.+..++-.|.+.+++.+..+++++++ +..+.+.+|+|.| |+++. +.++++.+++.++...++..+|
T Consensus 183 l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 183 LTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred HHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 9999987654444333556689999999999998 7788899999888 88864 4577899988888887776665
Q ss_pred C
Q psy8190 278 T 278 (348)
Q Consensus 278 ~ 278 (348)
.
T Consensus 261 ~ 261 (442)
T TIGR01290 261 Q 261 (442)
T ss_pred h
Confidence 4
No 101
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.67 E-value=2.7e-14 Score=127.44 Aligned_cols=195 Identities=18% Similarity=0.256 Sum_probs=142.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC---CCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG---ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G---~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
+.+|+++|.||.....+.. .....++++++++.+..+.... ...|.|+|| + | ....+.+.++++.+++.++.
T Consensus 22 ~~gCnl~C~~C~~~~~~~~--~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GG-E-P-ll~~~~~~~li~~~~~~g~~ 96 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDL--KGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGG-E-P-LLQPEFLSELFKACKELGIH 96 (235)
T ss_pred ECCCCCcCCCCCChhhccC--CCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCc-c-c-ccCHHHHHHHHHHHHHCCCC
Confidence 7899999999986543322 1223479999998887765432 257889887 4 3 24556678999999987766
Q ss_pred EEE-ecCCCC--HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHH
Q psy8190 149 TCL-TLGMLN--ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRD 222 (348)
Q Consensus 149 i~~-~~g~l~--~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e 222 (348)
+.+ +.|.+. .+.+..+.+ .++.+.+++++ +++.++++++. +++..+++++.+++.|+.+...+++ |..++.+
T Consensus 97 ~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ 174 (235)
T TIGR02493 97 TCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEE 174 (235)
T ss_pred EEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHH
Confidence 554 455433 566666665 47889999999 78999888655 8899999999999999976555444 3356789
Q ss_pred HHHHHHHHHHhcCCCCCeeeccccccc---------CCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 223 QRAELIFQLANLNPYPESVPINNLVQI---------KGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P~---------~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
++.+.++++.+++. +..+.+.+|.|. +..++.+.++++.+++.+..++++.
T Consensus 175 ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 175 DIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred HHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999973 467777888774 2334556678888888888777763
No 102
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.64 E-value=4.8e-14 Score=133.70 Aligned_cols=173 Identities=21% Similarity=0.317 Sum_probs=135.6
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
...+++ |+.|+.+|.||........ ....++.+++.+.++++.+.|+..|.|+|| +.. . .+.+.++++.+++
T Consensus 8 ~l~iei-T~~CNl~C~~C~~~~~~~~---~~~~l~~e~~~~ii~~~~~~g~~~v~~~GG-EPl-l--~~~~~~ii~~~~~ 79 (358)
T TIGR02109 8 WLLAEL-THRCPLQCPYCSNPLELAR---RKAELTTEEWTDVLTQAAELGVLQLHFSGG-EPL-A--RPDLVELVAHARR 79 (358)
T ss_pred EEEEee-ccccCcCCCCCCCChhccc---ccCCCCHHHHHHHHHHHHhcCCcEEEEeCc-ccc-c--cccHHHHHHHHHH
Confidence 445778 9999999999986532111 123488999999999888899999999987 432 2 2357788888888
Q ss_pred cCcEEEE-ecC-CCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCC
Q psy8190 145 IGLETCL-TLG-MLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSES 220 (348)
Q Consensus 145 ~~~~i~~-~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget 220 (348)
.++.+.+ +.| .++++.++.|+++|++.|.+++++ .++.++++++. .+++..+++++.+++.|+.+.+.+.+ ..++
T Consensus 80 ~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~N 158 (358)
T TIGR02109 80 LGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRHN 158 (358)
T ss_pred cCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccCC
Confidence 7765443 344 689999999999999999999999 68999988764 47999999999999999987554332 2789
Q ss_pred HHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 221 RDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
.+++.+.++++.+++ ++.+.+..+.|
T Consensus 159 ~~~l~~~~~~~~~lg--~~~i~~~~~~~ 184 (358)
T TIGR02109 159 IDQIPEIIELAIELG--ADRVELATTQY 184 (358)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEEeeec
Confidence 999999999999998 88887765443
No 103
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.64 E-value=8.9e-14 Score=129.32 Aligned_cols=219 Identities=14% Similarity=0.187 Sum_probs=152.1
Q ss_pred ChHHHHHHHHHHHHhhcCC-CceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEE
Q psy8190 41 PFNDLLFRAQKVHRKYFDA-NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFC 119 (348)
Q Consensus 41 ~~~~l~~~A~~~~~~~~~g-~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~ 119 (348)
|+..-+..+.++-+++..| ++..+...+++ |..|+.+|.||....... .. ....++++++.+.++ +.|+..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~~-~~-~~~~ls~ee~~~~i~---e~g~~~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPA-EI-LKQRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCCC-cc-cccCCCHHHHHHHHH---HcCCCEEE
Confidence 4444444555554544433 33335556778 999999999998654321 11 112478998887654 46888899
Q ss_pred EeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccC-CCCCHHHHHH
Q psy8190 120 MGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLN 197 (348)
Q Consensus 120 l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~~~~~~~~~~ 197 (348)
|.|| ++... .++.++++.+++.+..+.+ +.|.+-.+.+..++++|...+++++++.++.++.+. +..+++..++
T Consensus 78 i~GG-EPLL~---pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~ 153 (318)
T TIGR03470 78 IPGG-EPLLH---PEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVE 153 (318)
T ss_pred EeCc-ccccc---ccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHH
Confidence 9887 53322 4578888888876655543 456666677899999999999999999667776664 4569999999
Q ss_pred HHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHH
Q psy8190 198 TLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 198 ~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~ 272 (348)
+++.+++.|+.+.+...+=-+++.+++.+.++++.+++ ++.+.+.+..|...++-.+ ..++.++..+.+...
T Consensus 154 ~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~~ 225 (318)
T TIGR03470 154 AIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFREV 225 (318)
T ss_pred HHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHHH
Confidence 99999999998766544323789999999999999998 8888888777765444322 234555655554443
No 104
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.58 E-value=5.8e-13 Score=119.73 Aligned_cols=196 Identities=13% Similarity=0.186 Sum_probs=141.9
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
+.+|+.+|.||..+..+... ..+.++++|+++++...... ....|.|+|| + | ....+.+.++++.+++.++.
T Consensus 27 ~~gCnl~C~~C~~~~~~~~~--~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGG-E-P-ll~~~~~~~l~~~~k~~g~~ 101 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTWDTH--GGKEVTVEELMKEVVTYRHFMNASGGGVTASGG-E-A-ILQAEFVRDWFRACKKEGIH 101 (246)
T ss_pred ECCCCCcCCCCCCHHHCCCC--CCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCc-c-H-hcCHHHHHHHHHHHHHcCCC
Confidence 69999999999965432211 12347999999888765432 3457888887 4 3 34667778999999988887
Q ss_pred EEEe-cCCCC--HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE--eEeeecCCCHH
Q psy8190 149 TCLT-LGMLN--ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESRD 222 (348)
Q Consensus 149 i~~~-~g~l~--~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~--~~i~Glget~e 222 (348)
+.+. .|.+. .+.++.+.+ .+|.+.+++++ +++.++.+.+. +.+..++.++.+++.|+++.. .++-|..++.+
T Consensus 102 i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd~~~ 179 (246)
T PRK11145 102 TCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDD 179 (246)
T ss_pred EEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHH
Confidence 7654 56553 477777766 47999999999 78888888654 557888999999999986554 44555567778
Q ss_pred HHHHHHHHHHhcCCCCCeeecccccccCCC---------CCCCCCCCCHHHHHHHHHHHHHH
Q psy8190 223 QRAELIFQLANLNPYPESVPINNLVQIKGT---------PLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 223 ~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT---------~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
++.+.++++..++. +..+.+.+|.|.++. ++.+.++++.+++.+...+++..
T Consensus 180 ei~~l~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 180 SAHRLGEFIKDMGN-IEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred HHHHHHHHHHhcCC-cceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 89999999988852 567778888876543 34456778888887777666643
No 105
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.52 E-value=2.7e-12 Score=110.91 Aligned_cols=156 Identities=16% Similarity=0.277 Sum_probs=112.0
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL 151 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 151 (348)
|++|+.+|.||..+.... ......++++++.+.++... ..++.|.|+|| + |. ...+ +.++++.+++.++.+.+
T Consensus 23 t~~Cnl~C~~C~~~~~~~--~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGG-E-Pl-l~~~-l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELID--REGSGEIEVEFLLEFLRSRQ-GLIDGVVITGG-E-PT-LQAG-LPDFLRKVRELGFEVKL 95 (191)
T ss_pred cCCCCCCCCCCCCccccC--CCCCCcCCHHHHHHHHHHhc-CCCCeEEEECC-c-cc-CcHh-HHHHHHHHHHCCCeEEE
Confidence 899999999998764211 12223478999999887652 23678999887 4 32 2333 88888888888877776
Q ss_pred ecCCCCHHHHHHHHHhC-CCeeeccCCCCHHHHhcc-CCCCCHH-HHHHHHHHHHHcCCeeeEeE--eeecCCCHHHHHH
Q psy8190 152 TLGMLNENQAYRLKKVG-LDYYNHNLDTSPKLYGDI-ISTRDYE-NRLNTLKNVRNVGINICCGG--IIGLSESRDQRAE 226 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG-~~~i~~g~et~~e~l~~i-~~~~~~~-~~~~~i~~~~~~G~~i~~~~--i~Glget~e~~~~ 226 (348)
......++.++.+.++| ++.+.+++++.++.+..+ +.+..++ +.+++++.+++.|+.+.... +-|... .+++.+
T Consensus 96 ~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~ei~~ 174 (191)
T TIGR02495 96 DTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLD-EEDLAE 174 (191)
T ss_pred EeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHHHHH
Confidence 54445788899999999 699999999865656555 4445665 89999999999998655443 334432 567888
Q ss_pred HHHHHHhcC
Q psy8190 227 LIFQLANLN 235 (348)
Q Consensus 227 ~l~~l~~l~ 235 (348)
.++++.+++
T Consensus 175 ~~~~l~~~~ 183 (191)
T TIGR02495 175 IATRIKENG 183 (191)
T ss_pred HHHHhccCC
Confidence 888887664
No 106
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.50 E-value=1.7e-12 Score=120.43 Aligned_cols=202 Identities=16% Similarity=0.256 Sum_probs=147.5
Q ss_pred HHHHHHHHhhcCCCce-EEEEEEEeecCCCCCC----CCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEe
Q psy8190 47 FRAQKVHRKYFDANEI-ELAVLLSIKTGGCTED----CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG 121 (348)
Q Consensus 47 ~~A~~~~~~~~~g~~v-~~~~~i~i~t~~C~~~----C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~ 121 (348)
...+.+.++|- |-- ++..-|+. .++|+.. |+||.-+.. +...+ +++|.|+++++.+++.|++.|.|+
T Consensus 167 ~~GA~vv~qHP--~yp~~vi~EiET-yRGC~r~~~ggCSFCtEp~~---g~~~~--R~~e~Vv~EVkaLY~~GvrhFRlG 238 (560)
T COG1031 167 PLGAEVVKQHP--NYPEYVICEIET-YRGCPRRVSGGCSFCTEPVR---GRPEF--RPPEDVVEEVKALYRAGVRHFRLG 238 (560)
T ss_pred hccchHHHhCC--CCcceEEEEEee-ccCCcccccCCCccccCcCc---CCccc--CCHHHHHHHHHHHHHhccceeeec
Confidence 33445555443 222 44456677 9999976 999997763 22233 699999999999999999887654
Q ss_pred --------cc----CCCCCcccHHHHHHHHHHHHhc--CcE-EE---EecCCC------CHHHHHHHHHhCC--Ceeecc
Q psy8190 122 --------AA----WRELKDRDLDNIENMICEVKKI--GLE-TC---LTLGML------NENQAYRLKKVGL--DYYNHN 175 (348)
Q Consensus 122 --------gg----~~~~~~~~~~~~~~l~~~i~~~--~~~-i~---~~~g~l------~~e~l~~Lk~aG~--~~i~~g 175 (348)
++ ++ .+..+.+.+.++++.++.. ++. ++ +||+.+ +++.++.+-+.|- |...+|
T Consensus 239 RQ~difsy~~~~~g~e-~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfG 317 (560)
T COG1031 239 RQADIFSYGADDNGGE-VPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFG 317 (560)
T ss_pred cccceeeecccccCCC-CCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeee
Confidence 11 12 2345688999999999974 332 22 345543 2356677777753 778999
Q ss_pred CCC-CHHHHhccCCCCCHHHHHHHHHHHHHcC-------Ce---eeEeEeeec-CCCHHHHHHHHHHHHhcCC---CCCe
Q psy8190 176 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-------IN---ICCGGIIGL-SESRDQRAELIFQLANLNP---YPES 240 (348)
Q Consensus 176 ~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G-------~~---i~~~~i~Gl-get~e~~~~~l~~l~~l~~---~~~~ 240 (348)
+|| ++.+.+.-+-.-+.++.+++++...+.| ++ ...++++|| |||.|.+.-..++|.++-+ .+..
T Consensus 318 lEsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRR 397 (560)
T COG1031 318 LESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRR 397 (560)
T ss_pred ccccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEE
Confidence 999 7888876655679999999999999865 32 367899999 9999999999999888642 3567
Q ss_pred eecccccccCCCCCCCC
Q psy8190 241 VPINNLVQIKGTPLYGS 257 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~ 257 (348)
|.+-..+++||||++..
T Consensus 398 INIRqV~~fpgT~~~~~ 414 (560)
T COG1031 398 INIRQVVVFPGTPMWER 414 (560)
T ss_pred eeeeeEeecCCCchhhh
Confidence 88889999999999864
No 107
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.50 E-value=3.8e-12 Score=118.17 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=141.5
Q ss_pred cCCCCCCCCcCCCCCCCCCC--CccccccCHHHHHHHHHHHHh---C---C--------------CCEEEEeccCCCCCc
Q psy8190 72 TGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKAKS---D---G--------------ATRFCMGAAWRELKD 129 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~~---~---G--------------~~~i~l~gg~~~~~~ 129 (348)
..+|+++|.||.-+..+... .......++++|++++..... . | .+.+.|+++|++ ..
T Consensus 65 ~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEP-lL 143 (322)
T PRK13762 65 VAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEP-TL 143 (322)
T ss_pred hHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccc-cc
Confidence 44599999999865533211 112335789999998865421 1 2 345777766553 22
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHHH
Q psy8190 130 RDLDNIENMICEVKKIGLETCLT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRN 204 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~~ 204 (348)
.+++.++++.+++.++.+.+. .|.+ ++.++.| +++++.+.+++++ +++.++.++++ .+++.++++++.+++
T Consensus 144 --~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~ 219 (322)
T PRK13762 144 --YPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPS 219 (322)
T ss_pred --hhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 247999999999988877654 5655 6888888 7899999999999 79999999753 589999999999999
Q ss_pred cCCeee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC--CCCCCCCCHHHHHHHHHHHHHHCC
Q psy8190 205 VGINIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP--LYGSSILDPLEFIRTIAVARITMP 277 (348)
Q Consensus 205 ~G~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~--l~~~~~~~~~~~~~~~a~~R~~lp 277 (348)
.|..+. ..++-|. +..+..+.++++++++ ++.+.+.+|+|..... +.....++.+++.++...++....
T Consensus 220 ~~~~~~ir~tlv~g~--Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~ 292 (322)
T PRK13762 220 KKTRTVIRITLVKGY--NMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTG 292 (322)
T ss_pred CCCCEEEEEEEECCc--CccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcC
Confidence 987654 4444454 4444447777888887 8999998888876543 233356888888888888776653
No 108
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.50 E-value=1.2e-11 Score=116.28 Aligned_cols=189 Identities=11% Similarity=0.178 Sum_probs=135.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~- 144 (348)
..||+.+|.||..+.. . ..+.++++||++++..... .|+..|.+.|+|++ ....+.+.++++.+++
T Consensus 116 qvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEP--Lln~~~v~~~l~~l~~~ 188 (356)
T PRK14455 116 QVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEP--FDNYDNVMDFLRIINDD 188 (356)
T ss_pred CCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccc--cCCHHHHHHHHHHHhcc
Confidence 6799999999987743 1 1235899999998875321 35778888775563 3457899999999986
Q ss_pred cCc-----EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeeeE--
Q psy8190 145 IGL-----ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICC-- 211 (348)
Q Consensus 145 ~~~-----~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~~-- 211 (348)
.++ +++++...+.+ .+..+.+.++. .+.+++.+ +++.++.+.+ ..+.++++++++.+.+ .|.++..
T Consensus 189 ~g~~~s~r~itvsT~G~~~-~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey 267 (356)
T PRK14455 189 KGLAIGARHITVSTSGIAP-KIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEY 267 (356)
T ss_pred cCcccCCCceEEEecCchH-hHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 466 66665433333 45566676653 35578999 7999987544 5688999999998765 4555554
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
-+|=|..++.+++.+..++++.++ ..|.+.++.|.++.++ .+++.+.+.++..+++.
T Consensus 268 ~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky---~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 268 ILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDY---VRTPKEDIFAFEDTLKK 324 (356)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCC---cCCCHHHHHHHHHHHHH
Confidence 445566999999999999999885 5788888888887654 34677777777666654
No 109
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.49 E-value=1.5e-11 Score=115.68 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=144.1
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH--------HhCCCCEEEEeccCCCCCcccHHHHHHHH
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA--------KSDGATRFCMGAAWRELKDRDLDNIENMI 139 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~--------~~~G~~~i~l~gg~~~~~~~~~~~~~~l~ 139 (348)
++. ..+|+.+|.||..... +.. +.++.+||+.++..+ ...+++.|+|.|-|++ ....+.+.+++
T Consensus 125 iSs-q~GCnl~C~FC~tg~~---g~~--rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEP--Lln~d~v~~~i 196 (368)
T PRK14456 125 ISS-QAGCALRCSFCATGQM---GFR--RNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEP--LLNTDNVFEAV 196 (368)
T ss_pred EEe-cCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCcc--ccCHHHHHHHH
Confidence 445 7899999999986542 212 248899999886432 2356889999883353 34556788888
Q ss_pred HHHHhcC----c---EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC----CCCHHHHHHHHH-HHHHc
Q psy8190 140 CEVKKIG----L---ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS----TRDYENRLNTLK-NVRNV 205 (348)
Q Consensus 140 ~~i~~~~----~---~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~----~~~~~~~~~~i~-~~~~~ 205 (348)
+.+++.+ + .++++...+.+ .++.|.++|++ ++.+++.+ +++.++.+.| ..+.++++++++ .+.+.
T Consensus 197 ~~l~~~~~~~~is~r~ItisT~Gl~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~ 275 (368)
T PRK14456 197 LTLSTRKYRFSISQRKITISTVGITP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKT 275 (368)
T ss_pred HHHhccccccCcCcCeeEEECCCChH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhc
Confidence 8887631 2 45555433544 47999999996 89999999 7999998853 458899999997 46777
Q ss_pred CCee--eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec
Q psy8190 206 GINI--CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM 283 (348)
Q Consensus 206 G~~i--~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~ 283 (348)
|..+ ..-+|-|+.++.+++.+.+++++.+. ..+.+-+|.|.++.++. +++.+.+.+...+.+..=-++.|+-
T Consensus 276 g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~---~~VnlIpyn~~~~~~~~---~ps~e~i~~F~~~L~~~Gi~vtvR~ 349 (368)
T PRK14456 276 GEPVTLVYMLLEGINDSPEDARKLIRFASRFF---CKINLIDYNSIVNIKFE---PVCSSTRERFRDRLLDAGLQVTVRK 349 (368)
T ss_pred CCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCC---CeeEEeeeccCCCCCCC---CCCHHHHHHHHHHHHHCCCcEEeeC
Confidence 8764 45566677899999999999999884 46777778887777653 5677777776666665322334444
Q ss_pred ccc
Q psy8190 284 SAG 286 (348)
Q Consensus 284 s~g 286 (348)
+.|
T Consensus 350 ~~G 352 (368)
T PRK14456 350 SYG 352 (368)
T ss_pred CCC
Confidence 443
No 110
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.47 E-value=2e-11 Score=114.31 Aligned_cols=204 Identities=17% Similarity=0.158 Sum_probs=141.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-I 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~ 145 (348)
|+. +.+|+.+|.||.... . +. .+.++++||++++..+.. .+++.|.|.|.|+ | ....+.+.+.++.+++ .
T Consensus 107 vSs-q~GC~~~C~FC~tg~-~--~~--~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GE-P-l~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 107 ISS-QVGCAMGCAFCLTGT-F--RL--TRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGE-P-LANLDNVIPALQILTDPD 178 (349)
T ss_pred EEe-cCCcCCCCccCCCCC-C--CC--CCCCCHHHHHHHHHHHHhcCCccEEEEecCCc-c-hhcHHHHHHHHHHhhccc
Confidence 455 899999999998553 2 21 235899999998877653 4789998888556 3 3467788888888875 4
Q ss_pred Cc-----EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccC---CCCCHHHHHHHHHHHHHc-CCeee--EeE
Q psy8190 146 GL-----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII---STRDYENRLNTLKNVRNV-GINIC--CGG 213 (348)
Q Consensus 146 ~~-----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~---~~~~~~~~~~~i~~~~~~-G~~i~--~~~ 213 (348)
++ +++++...+.+ .+..+.+..-..+.+++.+ +++.++.+. +..+.++.+++++...+. +-++. ..+
T Consensus 179 gl~~s~r~itVsTnGl~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvL 257 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVM 257 (349)
T ss_pred ccCcCCceEEEECCCchH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 55 56665433433 3444444432345578999 799999874 456889998888776553 44554 455
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8190 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
|-|..++.+++.+..++++.++ ..+.+-+|.|.+|. +..+|+.+.+.++..+.+..--.+.+|-+.|
T Consensus 258 I~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~---~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G 324 (349)
T PRK14463 258 IRGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGC---DFRSPTQEAIDRFHKYLLDKHVTVITRSSRG 324 (349)
T ss_pred eCCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCC---CCCCCCHHHHHHHHHHHHHCCceEEEeCCCC
Confidence 5567999999999999999985 47778888877764 3567788877777777665433344555543
No 111
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=116.29 Aligned_cols=203 Identities=18% Similarity=0.338 Sum_probs=150.6
Q ss_pred cCCCCCCCCcCCCCCCCCCC-------CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-
Q psy8190 72 TGGCTEDCGYCPQSTHYNTE-------ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK- 143 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~-------~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~- 143 (348)
-.+|..+|.||++.+..... ...|.....+++++....-. ..+++++++-- ..| ....++..+++.+.
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~i-~~p--~~~~d~~~i~~~~~~ 113 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQI-AYP--RALNDLKLILERLHI 113 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh-cccccccceee-ccc--cccchhhhhhhhhhh
Confidence 48999999999988732211 01233344566665433211 12677877654 122 34456777788877
Q ss_pred hcCcEEEEe--cCCCC-HHHHHHHHHhCCCeeeccCCC-CHHHHhccCC----CCCHHHHHHHHHHHHH-cC-CeeeEeE
Q psy8190 144 KIGLETCLT--LGMLN-ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS----TRDYENRLNTLKNVRN-VG-INICCGG 213 (348)
Q Consensus 144 ~~~~~i~~~--~g~l~-~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~----~~~~~~~~~~i~~~~~-~G-~~i~~~~ 213 (348)
..+.+++++ ....+ .+.+...++.|.+.+.++.+. ++++|+.+++ .|+++..++.++.+.+ .| -++.+++
T Consensus 114 ~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihl 193 (339)
T COG2516 114 RLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHL 193 (339)
T ss_pred ccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeE
Confidence 456666655 33233 899999999999999999999 7999998842 4799999999999887 46 5899999
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee
Q psy8190 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR 282 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~ 282 (348)
|+|+||++.++++++..++..+ -.+++..|.|..||.|.+..+++.+.+.++..+. .++.+..+.
T Consensus 194 iVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~-yli~~G~v~ 258 (339)
T COG2516 194 IVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVERYRKIQVAR-YLIGNGEVD 258 (339)
T ss_pred EeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHHHHHHHHHH-HHHhcCccc
Confidence 9999999999999999999997 5788899999999999999988888777765544 666664444
No 112
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.47 E-value=1.4e-11 Score=115.63 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=142.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH---H-hC--C---CCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA---K-SD--G---ATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~---~-~~--G---~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
..+|+.+|.||..... +. .+.++++||++++... . .. | ++.|.|.|+|++ ....+.+.++++.+
T Consensus 109 q~GC~~~C~FC~tg~~---g~--~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP--Lln~~~v~~~l~~l 181 (354)
T PRK14460 109 QVGCAMGCTFCSTGTM---GF--ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP--LLNLDEVMRSLRTL 181 (354)
T ss_pred CCCcCCCCccCCCCCC---CC--CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc--cCCHHHHHHHHHHH
Confidence 6799999999985532 11 2348999999998432 2 22 3 567878775563 34678888999888
Q ss_pred Hhc-Cc-----EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHH-HHcCCee--
Q psy8190 143 KKI-GL-----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNV-RNVGINI-- 209 (348)
Q Consensus 143 ~~~-~~-----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~-~~~G~~i-- 209 (348)
++. ++ +++++..-+ .+.++.|.++|+..+.+++.+ +++.++++.+. .+.++.+++++.. .+.|-++
T Consensus 182 ~~~~Gl~~~~r~itvsT~G~-~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~i 260 (354)
T PRK14460 182 NNEKGLNFSPRRITVSTCGI-EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTF 260 (354)
T ss_pred hhhhccCCCCCeEEEECCCC-hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 763 54 466653323 667889999999999999999 79999998764 4788888887754 4455444
Q ss_pred eEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy8190 210 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 210 ~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
..-+|-|+.++.+++.+..++++.++ ..|.+-+|+|.+|.++ .+++.+++.++..+++..=-++.+|-+.
T Consensus 261 ey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~~Gi~vtir~~~ 330 (354)
T PRK14460 261 EYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWSKGITAIIRKSK 330 (354)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 45666677999999999999999986 3688888888888875 4678887777766665532223344443
No 113
>KOG2672|consensus
Probab=99.46 E-value=1.4e-12 Score=113.61 Aligned_cols=172 Identities=22% Similarity=0.346 Sum_probs=137.3
Q ss_pred eecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcccHHHHHHHHHHHHhcCcE
Q psy8190 70 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGLE 148 (348)
Q Consensus 70 i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~-~~~~~~~~~~~~l~~~i~~~~~~ 148 (348)
+-+..|...|.||+.....++. -+++.|-.+.++.+.+.|+..|+|++-+. ++++...+.+.+.++.|+....+
T Consensus 116 lmGDTCTRGCRFCsVKTsR~Pp-----PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ 190 (360)
T KOG2672|consen 116 LMGDTCTRGCRFCSVKTSRNPP-----PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPE 190 (360)
T ss_pred eecCccccCcceeeeecCCCCc-----CCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcc
Confidence 3389999999999987742221 25566667777888899999999987532 34556788999999999986555
Q ss_pred EEE---ecCCC-CHHHHHHHHHhCCCeeeccCCCCHHHHhccCC-CCCHHHHHHHHHHHHHc--CCeeeEeEeeecCCCH
Q psy8190 149 TCL---TLGML-NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNV--GINICCGGIIGLSESR 221 (348)
Q Consensus 149 i~~---~~g~l-~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~-~~~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~ 221 (348)
+-+ .+... +-+.++.+...|+|.+-+++||.+++-..++. ..++.+-+..++.+++. ++-..+.+|.|+|||.
T Consensus 191 ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglgetd 270 (360)
T KOG2672|consen 191 ILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGETD 270 (360)
T ss_pred cchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCCH
Confidence 532 33322 34678999999999999999998888887764 45999999999999985 4556688999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 222 DQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 222 e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
|++..++..|++.+ ++.+.+..+++
T Consensus 271 eei~~tl~dLr~~~--vdv~t~gqym~ 295 (360)
T KOG2672|consen 271 EEIKQTLKDLRAAD--VDVVTFGQYMQ 295 (360)
T ss_pred HHHHHHHHHHHHcC--CcEEecccccC
Confidence 99999999999999 89999988874
No 114
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.44 E-value=1.2e-11 Score=110.23 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=141.2
Q ss_pred EEEee-cCCCCCCCCcCCCCCCC--CCCCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy8190 67 LLSIK-TGGCTEDCGYCPQSTHY--NTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 67 ~i~i~-t~~C~~~C~fC~~~~~~--~~~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
+|.+- |.+|+.+|.||+..... +.....| ..++|.+++..+...+. +.-+.++.|-|+ |. ....+.+++++
T Consensus 108 viqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy-~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGE-P~--lYP~l~~lVqa 183 (414)
T COG2100 108 VIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDY-VVDPEYLLEWFEKVARFKGKGLEAHLDGQGE-PL--LYPHLVDLVQA 183 (414)
T ss_pred EEEecCCccccceeEEEeccCCcccceeccce-EecHHHHHHHHHHHHhhhCCCeEEEecCCCC-Cc--cchhHHHHHHH
Confidence 34554 88999999999976532 1122345 46888888888776543 234578887665 32 23578888888
Q ss_pred HHhc-CcE---EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC--CCCHHHHHHHHHHHHHcCCeeeEeEe
Q psy8190 142 VKKI-GLE---TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGI 214 (348)
Q Consensus 142 i~~~-~~~---i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i 214 (348)
+++. ++. +..|.+.++++.++.|.+||+||+++++.+ +++.-+.+.. ..+.+.+++..+.+..+|+.+-..-+
T Consensus 184 lk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv 263 (414)
T COG2100 184 LKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPV 263 (414)
T ss_pred HhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeee
Confidence 8874 443 345677999999999999999999999999 7888887765 45889999999999999997654423
Q ss_pred eecCCCHHHHHHHHHHHHhcCC--CCCeeecccccccCC-CCCCCCCCCCHHHHHHHHHHH
Q psy8190 215 IGLSESRDQRAELIFQLANLNP--YPESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAVA 272 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~--~~~~i~~~~l~P~~g-T~l~~~~~~~~~~~~~~~a~~ 272 (348)
.=.|-+++++...+.++++++. +-.-+.++.|+|++- -.-....+.+-.++..++...
T Consensus 264 ~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrel 324 (414)
T COG2100 264 WLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLREL 324 (414)
T ss_pred ecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHH
Confidence 3226677889999999999874 223456788888752 111112345555666555544
No 115
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=99.44 E-value=2.2e-12 Score=113.66 Aligned_cols=196 Identities=12% Similarity=0.147 Sum_probs=139.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLET 149 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i 149 (348)
||+|-++|.||-..... +.++-+ ++++||+..--..+.. -+...++++|.-..++.+.+.+.+.++.++- .++.-
T Consensus 61 TN~CiyDC~YCINr~s~--~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LRle~~f~G 137 (404)
T COG4277 61 TNFCIYDCAYCINRSSN--DTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILRLEHKFRG 137 (404)
T ss_pred hhhHHHhhHHHhccccC--CCcccc-cCHHHHHHHHHHHHHHhhhhhheeccccccCcchHHHHHHHHHHHHhhccccCc
Confidence 89999999999876543 334443 8999999886665554 4667788877444445677777777777774 23332
Q ss_pred EEecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH---------------cCC-e--
Q psy8190 150 CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN---------------VGI-N-- 208 (348)
Q Consensus 150 ~~~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~---------------~G~-~-- 208 (348)
.++...++...-+..+++| +||+++++|. .+.-++.+.+.+++.+++..+.+++. .-+ +
T Consensus 138 YIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapaG 217 (404)
T COG4277 138 YIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAPAG 217 (404)
T ss_pred EEEEEecCCCCHHHHHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccccCCC
Confidence 3332222222233445555 5999999999 79999999999999999888887775 112 1
Q ss_pred eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy8190 209 ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 271 (348)
Q Consensus 209 i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~ 271 (348)
-++.+|+|. |+|.++++..-..+-.-- ....|.++.|.|.|+||+.....++.....+++..
T Consensus 218 QSTQmivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQA 280 (404)
T COG4277 218 QSTQMIVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQA 280 (404)
T ss_pred CceEEEEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHHH
Confidence 357899999 999999998887776543 26788999999999999876545555555555554
No 116
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=5.1e-11 Score=111.93 Aligned_cols=198 Identities=15% Similarity=0.165 Sum_probs=138.0
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh----
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKK---- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~---- 144 (348)
..||+.+|.||..... +.. +.++.+||++++..... .++..|.|.|-|++ ....+.+.++++.+++
T Consensus 108 q~GC~l~C~fC~tg~~---g~~--r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEP--Lln~d~v~~~i~~l~~~~~~ 180 (343)
T PRK14469 108 QVGCPVKCIFCATGQS---GFV--RNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEP--LLNYENVIKSIKILNHKKMK 180 (343)
T ss_pred cCCCCCcCcCCCCCCC---Ccc--ccCCHHHHHHHHHHHHHhccCCcCeEEEEccChh--hhhHHHHHHHHHHHhchhcc
Confidence 6999999999985431 111 34789999998865432 35788988883353 3456778888888864
Q ss_pred -cCc-EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeee--EeEe
Q psy8190 145 -IGL-ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINIC--CGGI 214 (348)
Q Consensus 145 -~~~-~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~--~~~i 214 (348)
.+. .++++..-+ .+.++.|.+.|++ ++.+++.+ +++.++.+.| ..+.+++++.++...+ .+.++. .-+|
T Consensus 181 ~~g~~~itisTnG~-~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI 259 (343)
T PRK14469 181 NIGIRRITISTVGI-PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILI 259 (343)
T ss_pred cCCCCeEEEECCCC-hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEE
Confidence 233 566654333 6788999999998 79999999 7888887653 5689999999987655 355544 4456
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc
Q psy8190 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS 284 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s 284 (348)
-|...+.+++.+..++++.++ ..|.+-+|.|.++ ...+++.+++.++..+++..--++.+|.+
T Consensus 260 ~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~gi~vtvr~~ 322 (343)
T PRK14469 260 KGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKNGIEAEIRRE 322 (343)
T ss_pred CCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 677888899999999998885 4577777777654 34567777777766666553223344433
No 117
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.42 E-value=6e-11 Score=110.98 Aligned_cols=200 Identities=13% Similarity=0.130 Sum_probs=138.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-C-----CCEEEEeccCCCCCcccHHHHHHHHHHHHh-
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-G-----ATRFCMGAAWRELKDRDLDNIENMICEVKK- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G-----~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~- 144 (348)
+.+|+.+|.||..... +.. +.++++||++++...... | ++.|.|.|.|++ ....+.+.+.++.+..
T Consensus 100 q~GC~l~C~fC~tg~~---g~~--r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEP--lln~~~v~~~i~~l~~~ 172 (343)
T PRK14468 100 MVGCPAGCAFCATGAM---GFG--RNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEP--LLNYENVLKAARIMLHP 172 (343)
T ss_pred cCCCCCcCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcc--ccCHHHHHHHHHHhccc
Confidence 7899999999986542 212 348999999988655432 2 567889885453 3467888888887743
Q ss_pred cCc-----EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHH-HHcCCee--eE
Q psy8190 145 IGL-----ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNV-RNVGINI--CC 211 (348)
Q Consensus 145 ~~~-----~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~-~~~G~~i--~~ 211 (348)
.++ .++++.--+ ...++.|.+.|++ .+.+++.+ +++.++++.| ..+.++.+++++.. ++.+.++ ..
T Consensus 173 ~g~~l~~r~itvST~G~-~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~iey 251 (343)
T PRK14468 173 QALAMSPRRVTLSTVGI-PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEY 251 (343)
T ss_pred ccccccCceEEEECCCC-hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 333 455553223 3577888898887 68889999 7999999875 34889999999754 4455554 45
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy8190 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
-+|=|..++.+++.+..++++.+. ..+.+-++.|.++. +..+++.+.+.++..+.+..=-...+|-+.
T Consensus 252 vLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~---~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~ 319 (343)
T PRK14468 252 TMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGS---PFQSSPRAQILAFADVLERRGVPVSVRWSR 319 (343)
T ss_pred EEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 556677899999999999999884 57777778876653 345678877777666655432223445443
No 118
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.42 E-value=4.1e-11 Score=111.91 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=140.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.+.+ |.+|+.+|.||....... . .. ..+.+++.+.++.+.+ .|+..|.|+|| + |.....+.+.++++.+++.
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~~-~--~~-~~~~~~~~~~i~~i~~~~~i~eV~lsGG-D-PLl~~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFPY-K--EN-PGNKKKWQKALDYIAEHPEIIEILISGG-D-PLMAKDHELEWLLKRLEEI 188 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcCC-C--CC-CccHHHHHHHHHHHHhCCCcCEEEEECC-c-cccCCHHHHHHHHHHHHhc
Confidence 4566 999999999998654211 1 11 1225677777777664 47999999998 3 4334445688888888763
Q ss_pred ----CcEEEEe-c----CCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeE
Q psy8190 146 ----GLETCLT-L----GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGG 213 (348)
Q Consensus 146 ----~~~i~~~-~----g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~ 213 (348)
.+.+++. + ..++++.++.|+++|+..+.+.... .+++ .++..++++.++++|+.+. +.+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecce
Confidence 3444432 2 2479999999999999888776554 3332 2678899999999999754 666
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCce
Q psy8190 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRI 281 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i 281 (348)
+-|...+.+++.+..+.+.+++ +....++.+.|.+|+. .-..+.++..+++...|-.+++..+
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~~---~f~~~~~~~~~i~~~l~~~~sG~~~ 322 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGAK---HFLVPDAEAAQIVKELARLTSGYLV 322 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCcc---cccCCHHHHHHHHHHHHhcCCCCcc
Confidence 6677888888999999999988 7777778888888873 3357888999999999988887443
No 119
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.41 E-value=1.2e-10 Score=109.16 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=139.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---C------C--CCEEEEeccCCCCCcccHHHHHHHHH
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---D------G--ATRFCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~------G--~~~i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
.-||+.+|.||+.+.. +. .+.++++||+.++..+.. . | ++.|.|.|-|++ ....+.+.++++
T Consensus 128 QvGC~m~C~FCatg~~---g~--~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEP--LlN~d~V~~~i~ 200 (373)
T PRK14459 128 QAGCGMACPFCATGQG---GL--TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEP--LANYKRVVAAVR 200 (373)
T ss_pred cCCCCCcCCCCCCCCC---CC--CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcc--hhhHHHHHHHHH
Confidence 7899999999985531 21 235899999999876542 1 1 566888773353 346788999999
Q ss_pred HHHh-----cCc---EEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHH-HcC
Q psy8190 141 EVKK-----IGL---ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVG 206 (348)
Q Consensus 141 ~i~~-----~~~---~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~-~~G 206 (348)
.+++ .++ +++++.--+. ..++.|.+.|++ ++.+++-+ +++.++.+-|. .+.++.+++++... +.|
T Consensus 201 ~l~~~~~~g~gis~r~ITvST~Gl~-~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 201 RITAPAPEGLGISARNVTVSTVGLV-PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred HHhCcccccCCccCCEEEEECcCch-hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 9986 345 6777643233 357888888886 78899999 79999988773 68899999966654 678
Q ss_pred Ceee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 207 INIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 207 ~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
..+. .-+|=|+..+.++..+..++++.+...+..|.+-+|.|.++.++ ..++.+...++..+.+.
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y---~~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW---TASPPEVEREFVRRLRA 346 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC---cCCCHHHHHHHHHHHHH
Confidence 7654 55666788999999999999988842235788889999888764 34666666666665554
No 120
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.40 E-value=9.2e-11 Score=111.19 Aligned_cols=193 Identities=12% Similarity=0.137 Sum_probs=141.8
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
.+.+ |+.|+..|.||....... .....++.+++.+.++.+.+ .+++.|.|+|| .|...+.+.+..+++.+++.
T Consensus 111 Ll~v-T~~C~~~CryC~R~~~~g---~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGG--DPLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 111 LFLV-SNTCAMYCRHCTRKRKVG---DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGG--DPLLLSDDYLDWILTELRAI 184 (417)
T ss_pred EEEE-cCCcCCCCcCCCCcccCC---cccccCCHHHHHHHHHHHHhcCCCCEEEEeCC--ccccCChHHHHHHHHHHhhc
Confidence 4566 999999999998665321 12234688999998888877 48999999998 34334445666667777764
Q ss_pred -C---cEEEEe-----cCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEe
Q psy8190 146 -G---LETCLT-----LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 214 (348)
Q Consensus 146 -~---~~i~~~-----~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i 214 (348)
+ +.+..+ +..++++.++.|++++...|.+.+.+.+|+ .++..++++.++++|+.+. +.++
T Consensus 185 phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsVLL 255 (417)
T TIGR03820 185 PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSVLL 255 (417)
T ss_pred CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeeceEE
Confidence 3 334444 456889999999999876665555554443 5889999999999999754 6667
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy8190 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 279 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~ 279 (348)
=|...+.+.+.+....+.+++ +.--.++..-|.+|+.-+ ..+.++-++++..+|-.++..
T Consensus 256 kGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~hF---rv~~~~g~~I~~~lr~~~sG~ 315 (417)
T TIGR03820 256 AGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSHF---RTPVGKGIEIIESLIGHTSGF 315 (417)
T ss_pred CCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCcccc---cCcHHHHHHHHHHHHHhCCCC
Confidence 788889999999999998887 444444555667776543 457788999999999888774
No 121
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.37 E-value=1.6e-10 Score=107.91 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=139.9
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh----CCCCEEEEeccCCCCCcccHHHHHHHHHHHH
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVK 143 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~ 143 (348)
|+. +.||+.+|.||+.+.. + -.+.++.+||++++..... .++..|.|.|-|++ ....+.+.++++.++
T Consensus 103 vSs-q~GC~l~C~FC~t~~~---G--~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEP--L~N~d~v~~~l~~l~ 174 (348)
T PRK14467 103 VSS-QVGCAVGCKFCATAKD---G--LIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEP--LANYENVRKAVQIMT 174 (348)
T ss_pred EEc-CCCCCCcCcCCCCCCC---C--CcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChh--hcCHHHHHHHHHHHc
Confidence 344 8999999999986642 2 1235899999999866543 25788888884453 457889999999997
Q ss_pred h-cCc-----EEEEec-CCCCHHHHHHHHHh----CCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHH-HcCC
Q psy8190 144 K-IGL-----ETCLTL-GMLNENQAYRLKKV----GLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVGI 207 (348)
Q Consensus 144 ~-~~~-----~i~~~~-g~l~~e~l~~Lk~a----G~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~-~~G~ 207 (348)
+ .++ +++++. |.. + .++.+... .+ .+.+++-+ +++.++++.|. ...++.+++++... +.|-
T Consensus 175 ~~~gl~~~~r~itvsT~G~~-~-~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~ 251 (348)
T PRK14467 175 SPWGLDLSKRRITISTSGII-H-QIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR 251 (348)
T ss_pred ChhccCcCCCcEEEECCCCh-h-HHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 6 566 677764 444 2 23444432 34 35578888 79999998874 47777777776543 5676
Q ss_pred eee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy8190 208 NIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 208 ~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
++. .-+|-|+..+.++..+..+++..+. ....|.+-+|.|.++.++ ++++.+++.+...+++..--...+|-+.
T Consensus 252 ~V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~gi~v~vR~~~ 327 (348)
T PRK14467 252 RIMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPY---ERPELERVYKFQKILWDNGISTFVRWSK 327 (348)
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 554 5556677889999999999999874 145788888888777654 6678877777666655532233455444
Q ss_pred c
Q psy8190 286 G 286 (348)
Q Consensus 286 g 286 (348)
|
T Consensus 328 G 328 (348)
T PRK14467 328 G 328 (348)
T ss_pred C
Confidence 3
No 122
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.37 E-value=9.6e-11 Score=108.88 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=135.8
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 145 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~- 145 (348)
+.+ |.+|+.+|.||.-.... .. +- ..+.+++.+.+..+.+ .+++.|.|+|| + |.......+.++++.+...
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~-~~--~~-~~~~~~~~~~i~~i~~~~~i~~VvltGG-E-PL~~~d~~L~~ll~~l~~i~ 172 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFP-YQ--EN-QPNKAQWKEALEYIAQHPEINEVILSGG-D-PLMAKDHRLDWLLNLLEQIP 172 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcC-CC--CC-CCCHHHHHHHHHHHHhcCCCCEEEEeCc-c-cccCCchHHHHHHHHHHhCC
Confidence 446 99999999999865421 11 11 2455666665666654 48999999997 3 3223334466777666542
Q ss_pred ---CcEEE-----EecCCCCHHHHHHHHHhCCCeee-ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEe
Q psy8190 146 ---GLETC-----LTLGMLNENQAYRLKKVGLDYYN-HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 214 (348)
Q Consensus 146 ---~~~i~-----~~~g~l~~e~l~~Lk~aG~~~i~-~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i 214 (348)
.+.++ +.+..++++.++.|+++|+..+. +.++..+|+. ++..++++.++++|+.+. +.++
T Consensus 173 ~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvll 243 (321)
T TIGR03821 173 HLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLL 243 (321)
T ss_pred CCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceee
Confidence 22222 23446889999999999987764 3565544443 457789999999999764 4445
Q ss_pred eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc
Q psy8190 215 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR 280 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~ 280 (348)
=|...+.+++.+..+.+.+++ +....++.+.|..|+.- -..+.++..+++..+|..++...
T Consensus 244 kgiNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~~---f~v~~~~~~~i~~~l~~~~sG~~ 304 (321)
T TIGR03821 244 RGVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAAH---FDVDDERARALMAELLARLPGYL 304 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCccc---ccCCHHHHHHHHHHHHHhCCCCc
Confidence 577789999999999999998 77778888888888652 35788999999999998887743
No 123
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.36 E-value=3.1e-10 Score=106.70 Aligned_cols=188 Identities=12% Similarity=0.177 Sum_probs=133.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh------CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~- 144 (348)
..||+.+|.||+.... +. .+.++.+|+++++..... .+++.|.|.|.|++ ....+.+.++++.+++
T Consensus 112 Q~GC~l~C~fC~t~~~---g~--~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEP--Lln~d~v~~~l~~l~~~ 184 (355)
T TIGR00048 112 QVGCALGCTFCATAKG---GF--NRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEP--LLNLNEVVKAMEIMNDD 184 (355)
T ss_pred CCCCCCcCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCch--hhCHHHHHHHHHHhhcc
Confidence 5789999999986542 11 134789999998755432 24677888875463 3467888888888875
Q ss_pred cC--c---EEEEe-cCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHH-HHHcCCeee--
Q psy8190 145 IG--L---ETCLT-LGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKN-VRNVGINIC-- 210 (348)
Q Consensus 145 ~~--~---~i~~~-~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~-~~~~G~~i~-- 210 (348)
.+ + +++++ .|.+ +.++.|.+.+++ .+.+++.+ +++.++++.+ ..+.++.+++++. +++.|.++.
T Consensus 185 ~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtie 262 (355)
T TIGR00048 185 FGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFE 262 (355)
T ss_pred cccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 33 3 56665 4544 568888888887 57788999 7899998765 3478999988875 466777654
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
..+|-|+.++.+++....++++.++ ..+.+-+|.|.++.++ .+++.+++.++....+.
T Consensus 263 yvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 263 YVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 5556677889999999999999885 3677777887776554 45677776666555544
No 124
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.36 E-value=2.6e-10 Score=106.63 Aligned_cols=199 Identities=15% Similarity=0.183 Sum_probs=140.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC------CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
--||+.+|.||..+.. + -.+.++++||++++...... .+..|.|.|+|++ ....+.+.++++.+++.
T Consensus 117 QvGC~~~C~FCatg~~---g--~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEP--L~N~d~v~~~l~~l~~~ 189 (356)
T PRK14462 117 QVGCKVGCAFCLTAKG---G--FVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEP--LDNLDNVSKAIKIFSEN 189 (356)
T ss_pred cccCCCCCccCCCCCC---C--CcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCccc--ccCHHHHHHHHHHhcCc
Confidence 5699999999976542 2 12358999999998755432 1456777666563 45789999999999984
Q ss_pred -CcE-----EEEec-CCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCC---CCCHHHHHHHHH-HHHHcCCee--e
Q psy8190 146 -GLE-----TCLTL-GMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLK-NVRNVGINI--C 210 (348)
Q Consensus 146 -~~~-----i~~~~-g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~-~~~~~G~~i--~ 210 (348)
++. ++++. |.. +.++.|.+.++ ..+.+++-+ +++.++++-| ....++.+++++ .+.+.|-++ .
T Consensus 190 ~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ie 267 (356)
T PRK14462 190 DGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFE 267 (356)
T ss_pred cCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 664 46654 444 36677877755 445567888 7899988876 246688999887 445667654 4
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
.-+|-|+..+.++.....++++.++ ..|.+-+|.|.++.++ ++|+.+.+.++..+++..--.+.|+-+.
T Consensus 268 yvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~~gi~vtvR~~~ 336 (356)
T PRK14462 268 YLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNSKGLLCTIRESK 336 (356)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 5667788999999999999999885 5888888888887764 5678887777666665532233455443
No 125
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.35 E-value=2.1e-10 Score=109.10 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=122.6
Q ss_pred ccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE--ec--CCCCHHHHHHHHHhCC
Q psy8190 97 ILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL--TL--GMLNENQAYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~--g~l~~e~l~~Lk~aG~ 169 (348)
.++++|+++++...... ....|.|+||++ |. ..+.+.++++.+++.++++++ +. +..+++.+++++++|+
T Consensus 53 ~~t~~evl~ev~~d~~~~~~~~ggVtisGGGe-pl--~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gl 129 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKVTISGGGD-VS--CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGV 129 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCEEEEECCcc-cc--cCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCC
Confidence 47899999999875542 356788888854 32 347899999999998777654 34 3558999999999999
Q ss_pred CeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 170 DYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 170 ~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+.+.+++.+ +++.++++......+.+++.++.+.+ ++.+. .-++-|+..+.+ ..++++++.+++ +..+.+.+|
T Consensus 130 d~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~ee-l~~ti~~L~~lg--~~~V~L~~y 205 (404)
T TIGR03278 130 REVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDV-LWKTCADLESWG--AKALILMRF 205 (404)
T ss_pred CEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHH-HHHHHHHHHHCC--CCEEEEEec
Confidence 999999999 79999987665566999999999998 45543 444555544434 469999999998 888888888
Q ss_pred cccCCC-------CCC-CCCCCCHHHHHHH
Q psy8190 247 VQIKGT-------PLY-GSSILDPLEFIRT 268 (348)
Q Consensus 247 ~P~~gT-------~l~-~~~~~~~~~~~~~ 268 (348)
.+.... ++. +..+.+.+++.++
T Consensus 206 ~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~ 235 (404)
T TIGR03278 206 ANTEEQGLILGNAPIIPGIKPHTVSEFKNI 235 (404)
T ss_pred ccccccccccCCcCcccCCCCCCHHHHHHH
Confidence 864322 121 2446677777766
No 126
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.35 E-value=2.9e-10 Score=105.88 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=134.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--- 145 (348)
..||+.+|.||..... +..+ .++..|+++++....+ ..++.|.|.|-|++ ....+.+.++++.+++.
T Consensus 104 q~GC~l~C~fC~tg~~---g~~r--~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEP--llN~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 104 QAGCALGCAFCATGKL---GLDR--SLRSWEIVAQLLAVRADSERPITGVVFMGQGEP--FLNYDEVLRAAYALCDPAGA 176 (336)
T ss_pred CCCcCCCCccccCCCC---CCCC--CCCHHHHHHHHHHHHHhcCCCCCEEEEEecCcc--ccCHHHHHHHHHHHhCcccc
Confidence 7889999999997652 1122 3688999988876543 24788888883353 34567788888888752
Q ss_pred ---CcEEEEecCCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHHHcCCee--eEeEee
Q psy8190 146 ---GLETCLTLGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRNVGINI--CCGGII 215 (348)
Q Consensus 146 ---~~~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~~~G~~i--~~~~i~ 215 (348)
+..++++...+.+ .++.|.+.|. +.+.+++.+ +++.++.+.|. .+.++.+++++...+.+.++ ...+|-
T Consensus 177 ~~~~~~ItVsTnG~~p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~ 255 (336)
T PRK14470 177 RIDGRRISISTAGVVP-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMIS 255 (336)
T ss_pred ccCCCceEEEecCChH-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEe
Confidence 4466665433333 4556666665 789999999 79999998764 58999999999988877654 455666
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8190 216 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 216 Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R 273 (348)
|...+.++..+..++++.+. ..+.+-+|.|.++ ...+++.+++.++..+.+
T Consensus 256 GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 256 GVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDALA 306 (336)
T ss_pred cccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHHH
Confidence 78888999999999998774 4666667777554 456778887777776663
No 127
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.35 E-value=5.1e-10 Score=103.89 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=139.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-Cc--
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GL-- 147 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~-- 147 (348)
.-||+.+|.||..... +..+ .++.+||+.++..+.. .++..|.|.|-|++. .+.+.+.+.++.+++. ++
T Consensus 110 QvGC~~~C~FC~Tg~~---g~~r--nLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~N~d~vi~al~~l~~~~g~~~ 182 (345)
T PRK14466 110 QVGCKMNCLFCMTGKQ---GFTG--NLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--DNLDEVLKALEILTAPYGYGW 182 (345)
T ss_pred CCCCCCCCCCCCCCCC---CCCC--CCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--ccHHHHHHHHHHHhhccccCc
Confidence 4599999999995542 2222 3899999999887643 258889888833532 4667778877777652 44
Q ss_pred ---EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHHH-cCCee--eEeEeeec
Q psy8190 148 ---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRN-VGINI--CCGGIIGL 217 (348)
Q Consensus 148 ---~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~~-~G~~i--~~~~i~Gl 217 (348)
.+++++-.+.+..-+.+.+.. ..+.+++-+ +++.++.+.|. .+.++.+++++...+ .|-.+ ...+|=|.
T Consensus 183 s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv 261 (345)
T PRK14466 183 SPKRITVSTVGLKKGLKRFLEESE-CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL 261 (345)
T ss_pred CCceEEEEcCCCchHHHHHhhccC-cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC
Confidence 666664334433333333333 466788888 79999988874 478999999887544 44444 45566678
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8190 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
..+.++..+..++++.+. ..|.+.+|.|.||.+ ..+++.+.+.++....+..--.+.+|-+.|
T Consensus 262 ND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~---~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G 324 (345)
T PRK14466 262 NDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVD---LEGSDMARMEAFRDYLTSHGVFTTIRASRG 324 (345)
T ss_pred CCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCC---CcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 899999999999998874 688999999998864 456778877777777665433445554443
No 128
>KOG4355|consensus
Probab=99.33 E-value=2.9e-11 Score=109.92 Aligned_cols=206 Identities=16% Similarity=0.219 Sum_probs=142.2
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHH-HHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLD-NIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~-~~~~l~~~i~~~ 145 (348)
+|.| ..+|-..|.||-... .+.....| +++++++.++...+.|+.+|++.+-++..+..+.. .+..++.++.+.
T Consensus 190 Ii~i-ntgclgaCtyckTkh-arg~l~sy---~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~ 264 (547)
T KOG4355|consen 190 IISI-NTGCLGACTYCKTKH-ARGLLASY---PKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEV 264 (547)
T ss_pred EEEe-ccccccccccccccc-cccccccC---CHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHh
Confidence 6778 789999999997532 22233344 69999999999999999999998765443333222 233444444332
Q ss_pred CcE-EEEecCCC-CHHHHHHHHHh-------CCCeee-ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH--cCCeeeEe
Q psy8190 146 GLE-TCLTLGML-NENQAYRLKKV-------GLDYYN-HNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCG 212 (348)
Q Consensus 146 ~~~-i~~~~g~l-~~e~l~~Lk~a-------G~~~i~-~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~--~G~~i~~~ 212 (348)
-.+ ..+..|.. .+-.++-|.++ .+-.+. +.+|| ++.++..+.+.....+....+..+.+ -|+.+-++
T Consensus 265 iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATD 344 (547)
T KOG4355|consen 265 IPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATD 344 (547)
T ss_pred cchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeee
Confidence 111 22233322 22223333332 333333 35899 79999999987766677777777777 58999999
Q ss_pred Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHH----HHHHHHHHHHCCCC
Q psy8190 213 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEF----IRTIAVARITMPTS 279 (348)
Q Consensus 213 ~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~----~~~~a~~R~~lp~~ 279 (348)
+|.|+ +||.||+.++++.+++.. ..++.++.|.|.||||-......+..+. ..+..++|.+-|..
T Consensus 345 iIcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~sy~pYt 414 (547)
T KOG4355|consen 345 IICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFRSYTPYT 414 (547)
T ss_pred eeecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999 999999999999999998 8899999999999999887766555444 44555666666653
No 129
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.33 E-value=2.7e-10 Score=108.63 Aligned_cols=172 Identities=12% Similarity=0.162 Sum_probs=117.9
Q ss_pred cCCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--
Q psy8190 72 TGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKKIG-- 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~-- 146 (348)
|..|+.+|.||........ ....+..++.+.+...++.+.+. +...|.|.|| + |...+.+.+.++++.+++.+
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GG-E-Pll~~~~~~~~~~~~~~~~~~~ 89 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGG-E-PTLAGLEFFEELMELQRKHNYK 89 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECC-c-cccCChHHHHHHHHHHHHhccC
Confidence 5899999999987642211 11122246777666666655543 3456888887 4 32333456667777776643
Q ss_pred -c----EEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC----CCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 147 -L----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 147 -~----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~----~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+ .+.+|.-.++++.++.|++.|+ .|.+++++.++.++..++ ..+++.++++++.+++.|+++.+.+.+.
T Consensus 90 ~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~- 167 (370)
T PRK13758 90 NLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVT- 167 (370)
T ss_pred CCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEEec-
Confidence 3 2333444788999999999997 899999997677777763 3589999999999999998766655554
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeccc-cccc
Q psy8190 218 SESRDQRAELIFQLANLNPYPESVPINN-LVQI 249 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~-l~P~ 249 (348)
..+.+++.+.++++.+++ +..+.+.+ +.|.
T Consensus 168 ~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~ 198 (370)
T PRK13758 168 SNTARHVNKIYKYFKEKD--FKFLQFINCLDPL 198 (370)
T ss_pred cccccCHHHHHHHHHHcC--CCeEeeeeccCcc
Confidence 345677788888888888 77766543 3443
No 130
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.8e-10 Score=100.53 Aligned_cols=194 Identities=19% Similarity=0.237 Sum_probs=137.0
Q ss_pred cCCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEE
Q psy8190 72 TGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 150 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~ 150 (348)
+.||+.+|.||..+..+.. ........+++++...+ ....+...|.++|| + | ....+++.++++..++.|+.+.
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~--~~~~~~~gvt~SGG-E-P-~~q~e~~~~~~~~ake~Gl~~~ 116 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKA--FYSESGGGVTFSGG-E-P-TLQAEFALDLLRAAKERGLHVA 116 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHh--hhcCCCCEEEEECC-c-c-hhhHHHHHHHHHHHHHCCCcEE
Confidence 6999999999997765431 11111223344443322 22336888999988 3 3 3578999999999999999887
Q ss_pred E-ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCee--eEeEeeecCCCHHHHHH
Q psy8190 151 L-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINI--CCGGIIGLSESRDQRAE 226 (348)
Q Consensus 151 ~-~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~~i~Glget~e~~~~ 226 (348)
+ +.|..+++.++.|.+. +|.+.+.+-. +++.|+.+... +.+.+++.++.+.+.|..+ ..-++-|...+.+++.+
T Consensus 117 l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~-~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~~ 194 (260)
T COG1180 117 LDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA-DNEPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIRE 194 (260)
T ss_pred EEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCC-CcHHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHHHHH
Confidence 6 5789999999999988 8999999999 78888888744 3499999999999999865 44555566778899999
Q ss_pred HHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8190 227 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 227 ~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~ 275 (348)
.++++.++.. ..-+.+.+|+|. -.+...++...+...+....++..
T Consensus 195 i~~~i~~~~~-~~p~~~l~fhp~--~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 195 LAEFIADLGP-EIPIHLLRFHPD--YKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred HHHHHHhcCC-cccEEEeccccC--ccccccCCCcHHHHHHhHhhhHHH
Confidence 9999998752 344555666543 333334444444555555666554
No 131
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.31 E-value=9.9e-10 Score=102.67 Aligned_cols=200 Identities=15% Similarity=0.193 Sum_probs=139.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCc
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL 147 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~ 147 (348)
-.||+.+|.||..... +..+ .++++||++++...... ++..|.|.|-|++ ....+.+.+.++.+++ .++
T Consensus 108 qvGC~~~C~FC~tg~~---g~~r--nlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEP--lln~~~v~~~i~~l~~~~~i 180 (345)
T PRK14457 108 QVGCPMACDFCATGKG---GLKR--SLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEP--LLNIDEVLAAIRCLNQDLGI 180 (345)
T ss_pred CCCCCCcCCcCCCCCC---CCcc--ccCHHHHHHHHHHHHHHhcCCCCEEEEEecCcc--ccCHHHHHHHHHHHhcccCC
Confidence 4599999999986542 2112 37999999998776542 5788888884453 3467888888888876 355
Q ss_pred ---EEEEecCCCCHHHHHHHHHhCC------C-eeeccCCC-CHHHHhccCC---CCCHHHHHHHHHH-HHHcCCee--e
Q psy8190 148 ---ETCLTLGMLNENQAYRLKKVGL------D-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKN-VRNVGINI--C 210 (348)
Q Consensus 148 ---~i~~~~g~l~~e~l~~Lk~aG~------~-~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~-~~~~G~~i--~ 210 (348)
.++++.--+ .+.++.|.+.++ + .+.+++-+ +++.++++.| ..+.++.+++++. +.+.|-++ .
T Consensus 181 ~~r~itvST~G~-~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ie 259 (345)
T PRK14457 181 GQRRITVSTVGV-PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFE 259 (345)
T ss_pred ccCceEEECCCc-hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 666654222 234777777762 3 47788888 7999998866 3467888877755 66777654 4
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA 285 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~ 285 (348)
.-+|-|+..+.++..+..++++.++ ..|.+-+|+|.++.++ .+++.+++.++..+++..=-...|+-+.
T Consensus 260 y~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~Gi~vtvR~~~ 328 (345)
T PRK14457 260 YILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQRGVAVSVRASR 328 (345)
T ss_pred EEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 6667788999999999999999985 3788888888877654 5678877777666665432223344443
No 132
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.29 E-value=7.1e-10 Score=104.44 Aligned_cols=176 Identities=20% Similarity=0.312 Sum_probs=133.6
Q ss_pred EEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCcccHHHHHHHHHH
Q psy8190 63 ELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-ATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 63 ~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
.....+++ |+.|+.+|.||....... .. ..++.++..+....+.+.| ...+.++|| + |... ..+.++++.
T Consensus 18 p~~~~~~~-t~~Cnl~C~~C~~~~~~~---~~-~el~~~~~~~~~~~~~~~g~~~~v~~~gG-E-Pll~--~d~~ei~~~ 88 (347)
T COG0535 18 PLVVGIEL-TNRCNLACKHCYAEAGKK---LP-GELSTEEDLRVIDELAELGEIPVVIFTGG-E-PLLR--PDLLEIVEY 88 (347)
T ss_pred CcEEEEee-ccccCCcCcccccccCCC---Cc-cccCHHHHHHHHHHHHHcCCeeEEEEeCC-C-cccc--ccHHHHHHH
Confidence 34445677 999999999998776421 12 2478888887777888888 777778777 3 3222 678888888
Q ss_pred HHhc-CcEEEEec-C-CCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC-CCCHHHHHHHHHHHHHcCCeeeEeEeee
Q psy8190 142 VKKI-GLETCLTL-G-MLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIG 216 (348)
Q Consensus 142 i~~~-~~~i~~~~-g-~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~-~~~~~~~~~~i~~~~~~G~~i~~~~i~G 216 (348)
+++. ++.+++++ | .++++.++.++++|++.+.+++++ .++.++.++. ...++..+++++.+++.|+.+.....+
T Consensus 89 ~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v- 167 (347)
T COG0535 89 ARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV- 167 (347)
T ss_pred HhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-
Confidence 8864 66666543 3 478899999999999999999999 6788777765 568999999999999999973332222
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 217 LSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 217 lget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
...+.+++.+.++.+.+++ ...+.+..++|..
T Consensus 168 ~~~n~~~l~~~~~~~~~~g--~~~~~~~~~~~~g 199 (347)
T COG0535 168 TKINYDELPEIADLAAELG--VDELNVFPLIPVG 199 (347)
T ss_pred ecCcHHHHHHHHHHHHHcC--CCEEEEEEEeecc
Confidence 1677888889999999998 7888888888764
No 133
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.29 E-value=1.2e-09 Score=102.06 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=135.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEE-EEeccCCCCCcccHHHHHHHHHHHHh-cC
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRF-CMGAAWRELKDRDLDNIENMICEVKK-IG 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i-~l~gg~~~~~~~~~~~~~~l~~~i~~-~~ 146 (348)
..||+.+|.||+.... + -.+.++++||++++...... .+..+ +++|| ++ ....+.+.++++.+++ .+
T Consensus 108 qvGC~~~C~FC~tg~~---G--~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggG-EP--Lln~d~v~~~l~~l~~~~g 179 (342)
T PRK14454 108 QVGCRMGCKFCASTIG---G--MVRNLTAGEMLDQILAAQNDIGERISNIVLMGSG-EP--LDNYENVMKFLKIVNSPYG 179 (342)
T ss_pred CCCCCCcCCcCCCCCC---C--CcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCc-hh--hcCHHHHHHHHHHHhcccc
Confidence 7899999999986532 2 12348999999998766542 24554 45555 53 4577899999999997 56
Q ss_pred c-----EEEEecCCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHH-HHHcCCeee--EeE
Q psy8190 147 L-----ETCLTLGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKN-VRNVGINIC--CGG 213 (348)
Q Consensus 147 ~-----~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~-~~~~G~~i~--~~~ 213 (348)
+ +++++.-.+.+. +..+.+.+. ..+.+++-+ +++.++.+.+. ...++.+++++. ..+.|.++. .-+
T Consensus 180 i~~~~r~itvsTsG~~p~-i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~L 258 (342)
T PRK14454 180 LNIGQRHITLSTCGIVPK-IYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYAL 258 (342)
T ss_pred cCcCCCceEEECcCChhH-HHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEe
Confidence 6 677764333333 566666542 236778888 78888888763 366777766654 556676654 556
Q ss_pred eeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc
Q psy8190 214 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS 284 (348)
Q Consensus 214 i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s 284 (348)
|-|+..+.++..+..++++.+. ..|.+-||.|.++.. ..+++.+++.++..+++..--+..++-+
T Consensus 259 I~gvNDs~eda~~La~llk~l~---~~VnLiPyn~~~~~~---~~~ps~e~l~~f~~~l~~~gi~v~iR~~ 323 (342)
T PRK14454 259 VKGVNDSKEDAKELGKLLKGML---CHVNLIPVNEVKENG---FKKSSKEKIKKFKNILKKNGIETTIRRE 323 (342)
T ss_pred ECCCCCCHHHHHHHHHHHhcCC---ceEEEEecCCCCCCC---CCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 6688899999999999998873 578888888877664 3567887777766666653333344433
No 134
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.26 E-value=1.3e-09 Score=105.28 Aligned_cols=179 Identities=11% Similarity=0.174 Sum_probs=122.3
Q ss_pred EEEEEeecCCCCCCCCcCCCCCCCCC-CCccccccCHHHHHHHHHHHHhC-CCCE--EEEeccCCCCCcccHHHHHHHHH
Q psy8190 65 AVLLSIKTGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD-GATR--FCMGAAWRELKDRDLDNIENMIC 140 (348)
Q Consensus 65 ~~~i~i~t~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~-G~~~--i~l~gg~~~~~~~~~~~~~~l~~ 140 (348)
...+...+..|+.+|.||........ .......++.+.+.+.++++.+. +... |.++|| + |...+...+.++++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-E-PlL~~~~~~~~~~~ 91 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-E-TLMRPLSFYKKALE 91 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-c-cCCCcHHHHHHHHH
Confidence 33445424799999999997542110 00112248898888888887653 5555 455776 4 33333344555554
Q ss_pred HHHh----cCcEEE--EecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC----CCCHHHHHHHHHHHHHcCCeee
Q psy8190 141 EVKK----IGLETC--LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINIC 210 (348)
Q Consensus 141 ~i~~----~~~~i~--~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~----~~~~~~~~~~i~~~~~~G~~i~ 210 (348)
.+++ .++.+. +|.-.++++.++.|+++|+ .|.+++++.+++++..++ ..+++.+++.++.+++.|+.++
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~ 170 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN 170 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE
Confidence 4332 344443 3444889999999999997 899999997677776653 2489999999999999998765
Q ss_pred EeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 211 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 211 ~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+...+. .++.++..+.++++.+++ +..+.+.+++|.
T Consensus 171 i~~vv~-~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~~ 206 (412)
T PRK13745 171 AMAVVN-DFNADYPLDFYHFFKELD--CHYIQFAPIVER 206 (412)
T ss_pred EEEEEc-CCccccHHHHHHHHHHcC--CCeEEEEeccCc
Confidence 433321 566777888888999998 889998888873
No 135
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.22 E-value=1.2e-09 Score=98.52 Aligned_cols=166 Identities=20% Similarity=0.258 Sum_probs=123.8
Q ss_pred CCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC------CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC-
Q psy8190 74 GCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVKKIG- 146 (348)
Q Consensus 74 ~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~- 146 (348)
.|.++|.||...........+-.....+.|.++.+.+... .++.+.|++.|+ |+.. .++-++++.+++.+
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GE-PTLy--~~L~elI~~~k~~g~ 109 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGE-PTLY--PNLGELIEEIKKRGK 109 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCC-cccc--cCHHHHHHHHHhcCC
Confidence 8999999999855322211122236788999888887655 467788888765 3322 57888888898876
Q ss_pred cE-EEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCC---CHHHHHHHHHHHHHc--CCe-eeEeEeeecC
Q psy8190 147 LE-TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR---DYENRLNTLKNVRNV--GIN-ICCGGIIGLS 218 (348)
Q Consensus 147 ~~-i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~---~~~~~~~~i~~~~~~--G~~-i~~~~i~Glg 218 (348)
.. +-+++|.+ ++.++.|. -.|.+++.+++ +++.|++|++++ +++.++++++.+++. |-. +.++++=|+.
T Consensus 110 ~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N 186 (296)
T COG0731 110 KTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGIN 186 (296)
T ss_pred ceEEEEeCCCh-HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecccc
Confidence 44 34577777 88888888 46999999999 799999999875 799999999999995 433 3455555666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy8190 219 ESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
.+.+++.+..+++.... |+.|.+..++
T Consensus 187 ~~~e~~~~~a~ll~~~~--Pd~velk~~~ 213 (296)
T COG0731 187 DDEEELEEYAELLERIN--PDFVELKTYM 213 (296)
T ss_pred CChHHHHHHHHHHHhcC--CCeEEEecCc
Confidence 66677888888888898 8988877655
No 136
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.21 E-value=7.9e-09 Score=97.37 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=129.5
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC----------CCCEEEEeccCCCCCcccHHHHHHHHHH
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----------GATRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----------G~~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
--||+.+|.||..+.. +.. +.++.+||++++...... +++.|++.|+|++ ....+.+.+.++.
T Consensus 110 QvGC~~~C~FC~t~~~---g~~--rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEP--L~N~d~v~~al~~ 182 (372)
T PRK11194 110 QVGCALECKFCSTAQQ---GFN--RNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP--LLNLNNVVPAMEI 182 (372)
T ss_pred CCCCCCcCCCCCCCCC---CCC--CcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCcc--ccCHHHHHHHHHH
Confidence 4899999999986642 222 348999999998654421 2667766665563 3567888888888
Q ss_pred HHh-cC--c---EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHH-HHcC----
Q psy8190 142 VKK-IG--L---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNV-RNVG---- 206 (348)
Q Consensus 142 i~~-~~--~---~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~-~~~G---- 206 (348)
+.+ .+ + +++++.--+.+ .++.|.+..--.+.+++-+ +++.++.+.|. ...++.+++++.. .+.|
T Consensus 183 l~~~~g~~i~~r~itVsTsG~~~-~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r 261 (372)
T PRK11194 183 MLDDFGFGLSKRRVTLSTSGVVP-ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG 261 (372)
T ss_pred HhhhhccCcCCCeEEEECCCCch-HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC
Confidence 875 33 3 67776433333 3556665542245556777 78999988763 3567777765443 4453
Q ss_pred -CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 207 -INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 207 -~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
+.+..-+|-|+..+.++..+..++++.+. ..|.+-+|+|.+|.++ ++++.+.+.++..+++.
T Consensus 262 rI~irypLIpGvNDs~e~a~~La~ll~~l~---~~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 262 RVTVEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLME 324 (372)
T ss_pred eEEEEEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 44567778888999999999999999885 4888888888887654 56777776666656554
No 137
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.19 E-value=1.4e-08 Score=94.62 Aligned_cols=201 Identities=15% Similarity=0.132 Sum_probs=135.1
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 145 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--- 145 (348)
-.||+.+|.||..... +.. +.++..||+.++..+.+ ..+..|.|-|-|++ ....+.+.+.++.+++.
T Consensus 112 QvGC~m~C~FC~tg~~---g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEP--L~N~d~V~~~~~~l~~~~~~ 184 (342)
T PRK14465 112 QIGCTLNCKFCATAKL---EFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEP--MHNYFNVIRAASILHDPDAF 184 (342)
T ss_pred cCCCCCCCCCCcCCCC---Ccc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcc--hhhHHHHHHHHHHHhChhhh
Confidence 5699999999987552 222 34789999998876654 24677777662353 35667888888877763
Q ss_pred ---CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHH-HcCCeee--EeEee
Q psy8190 146 ---GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVR-NVGINIC--CGGII 215 (348)
Q Consensus 146 ---~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~-~~G~~i~--~~~i~ 215 (348)
...++++.--+.+...+...+..-..+.+++.+ +++.+..+.| ..+.++.+++++... +.|-.+. .-+|-
T Consensus 185 ~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~ 264 (342)
T PRK14465 185 NLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIP 264 (342)
T ss_pred cCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEEC
Confidence 226777643333444333333433478888999 7999998865 467899999998554 6676655 44556
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8190 216 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 216 Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
|+..+.|++.+..++++.++ ..+.+-+|.|. + .+.++|+.+.+.++..+.+..--.+.+|-+.|
T Consensus 265 GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~~-~---~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G 328 (342)
T PRK14465 265 GVNMGRENANKLVKIARSLD---CKINVIPLNTE-F---FGWRRPTDDEVAEFIMLLEPAGVPILNRRSPG 328 (342)
T ss_pred CccCCHHHHHHHHHHHhhCC---CcEEEEccCCC-C---CCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 77889999999999999885 45666666662 3 45677888888777666554322234554443
No 138
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.19 E-value=4e-09 Score=94.55 Aligned_cols=202 Identities=15% Similarity=0.169 Sum_probs=146.0
Q ss_pred eecCCCC----CCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-C--CCE--EE-Ee-ccCCCCCcccHHHHHHH
Q psy8190 70 IKTGGCT----EDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-G--ATR--FC-MG-AAWRELKDRDLDNIENM 138 (348)
Q Consensus 70 i~t~~C~----~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G--~~~--i~-l~-gg~~~~~~~~~~~~~~l 138 (348)
+.|.||. ..|.+|++..... .. ..+.+++.++..++.+. . ..+ |. |+ |...++...+.+.-..+
T Consensus 52 LrT~GC~w~~~~gC~MCgY~~d~~----~~-~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~I 126 (358)
T COG1244 52 LRTRGCRWYREGGCYMCGYPADSA----GE-PVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYI 126 (358)
T ss_pred EecCCcceeccCCcceeccccccC----CC-CCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCChhhCCHHHHHHH
Confidence 3489997 3599999876421 22 26788888888776542 1 222 32 33 33334444566777788
Q ss_pred HHHHHhcC----cEEEEecCCCCHHHHHHHHHh--CC-CeeeccCCC-CHHHH-hccCCCCCHHHHHHHHHHHHHcCCee
Q psy8190 139 ICEVKKIG----LETCLTLGMLNENQAYRLKKV--GL-DYYNHNLDT-SPKLY-GDIISTRDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 139 ~~~i~~~~----~~i~~~~g~l~~e~l~~Lk~a--G~-~~i~~g~et-~~e~l-~~i~~~~~~~~~~~~i~~~~~~G~~i 209 (348)
++.+.+.+ +-+...+..+++|.++.+.+. |. ..|.+|+|| ++++. ..|+++.++++++++++.++++|+.+
T Consensus 127 l~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~v 206 (358)
T COG1244 127 LERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKV 206 (358)
T ss_pred HHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCce
Confidence 88888752 334556889999999999998 65 458899999 68877 46899999999999999999999999
Q ss_pred eEeEeeec-C----CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy8190 210 CCGGIIGL-S----ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 210 ~~~~i~Gl-g----et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
.+.+++=+ - |..+|...++. ...+..+.+++++-...+||-++. +.||=.+-...++..++...|.
T Consensus 207 ktYlllKP~FlSE~eAI~D~i~Si~---~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 207 KTYLLLKPPFLSEKEAIEDVISSIV---AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred eEEEEecccccChHHHHHHHHHHHH---HhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 99988865 2 23344555554 433348999999999999997642 3566677788888888888885
Q ss_pred C
Q psy8190 279 S 279 (348)
Q Consensus 279 ~ 279 (348)
.
T Consensus 284 ~ 284 (358)
T COG1244 284 L 284 (358)
T ss_pred C
Confidence 3
No 139
>KOG2492|consensus
Probab=99.17 E-value=7e-10 Score=101.78 Aligned_cols=201 Identities=13% Similarity=0.173 Sum_probs=150.4
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc---------------
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD--------------- 131 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~--------------- 131 (348)
.++| -+||.+-|+||-.+-. .+ +-+.++.+-|+++++.+.+.|+++|.+.|..-+.+...
T Consensus 223 FvSi-MRGCdNMCtyCiVpft--rG--reRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 223 FVSI-MRGCDNMCTYCIVPFT--RG--RERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred HHHH-HhccccccceEEEecc--CC--cccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 4556 7899999999997643 22 22347899999999999999999998876421110000
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEE-----ecCCCCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCH
Q psy8190 132 -----------LDNIENMICEVKKIGLETCL-----TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDY 192 (348)
Q Consensus 132 -----------~~~~~~l~~~i~~~~~~i~~-----~~g~l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~ 192 (348)
--.+..+++.+.....++.. +|...++|.++.+++.- ...+.+..|| +.++++.++|+.+.
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysr 377 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSR 377 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCCh
Confidence 01577788877765443332 36688899999998863 3455667899 79999999999999
Q ss_pred HHHHHHHHHHHH--cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC----C--CCCHH
Q psy8190 193 ENRLNTLKNVRN--VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS----S--ILDPL 263 (348)
Q Consensus 193 ~~~~~~i~~~~~--~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~----~--~~~~~ 263 (348)
+..++-....+. -|...++++|-|+ |||.+|-..++-.+++.+ -+.+..+.+.-..+|..+.. . ..-.+
T Consensus 378 eayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~ay~r~~ddvpeeVKnr 455 (552)
T KOG2492|consen 378 EAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRAYHRLKDDVPEEVKNR 455 (552)
T ss_pred HhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhc--cCeeeeEEeeecccchhhhhhcccccHHHHHH
Confidence 999999999998 4778899999999 999999999999999998 78888888877778876532 1 12334
Q ss_pred HHHHHHHHHHH
Q psy8190 264 EFIRTIAVARI 274 (348)
Q Consensus 264 ~~~~~~a~~R~ 274 (348)
....++.++|.
T Consensus 456 rl~~Li~~Fre 466 (552)
T KOG2492|consen 456 RLFELITFFRE 466 (552)
T ss_pred HHHHHHHHHHH
Confidence 45566666664
No 140
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=97.53 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=128.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCC-CC---CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHH
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYN-TE---ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV 142 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~-~~---~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i 142 (348)
.+.+ |+.||.+|.||..+..-. .+ ....+..+.+++..++....+.| +.++|| .| ...+++..++++.+
T Consensus 31 VlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGG--dP-l~~ieR~~~~ir~L 103 (353)
T COG2108 31 VLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGG--DP-LLEIERTVEYIRLL 103 (353)
T ss_pred EEEE-ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCC--Ch-HHHHHHHHHHHHHH
Confidence 3556 999999999999887321 11 12344577888888877665544 456777 33 45788999999999
Q ss_pred Hhc---CcEEEEe--cCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 143 KKI---GLETCLT--LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 143 ~~~---~~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
|+. ++++++- .-..+++.++.|.+||+|-|-+.+.. -.....+.+++.++.|++.|+.+..- |-.+
T Consensus 104 K~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~--------~~~~~~e~~i~~l~~A~~~g~dvG~E-iPai 174 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPR--------PGSKSSEKYIENLKIAKKYGMDVGVE-IPAI 174 (353)
T ss_pred HHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCC--------ccccccHHHHHHHHHHHHhCccceee-cCCC
Confidence 974 4666653 34789999999999999988754420 01246788999999999999998776 3344
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC-------CCC---C---CCCCCHHHHHHHHHHHHH
Q psy8190 218 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-------PLY---G---SSILDPLEFIRTIAVARI 274 (348)
Q Consensus 218 get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT-------~l~---~---~~~~~~~~~~~~~a~~R~ 274 (348)
-.-.+.+.+.+.++.+.+ .+.+.++.|--.... -+. + ....|.+..++.+..+-.
T Consensus 175 pg~e~~i~e~~~~~~~~~--~~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~~~~~ 242 (353)
T COG2108 175 PGEEEAILEFAKALDENG--LDFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLKWAEE 242 (353)
T ss_pred cchHHHHHHHHHHHHhcc--cceeeeeeeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHHHHhc
Confidence 222456778888888887 677777766432211 011 1 133566666777766653
No 141
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.12 E-value=2.6e-08 Score=93.32 Aligned_cols=204 Identities=13% Similarity=0.181 Sum_probs=133.3
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC--CCEEEEeccCCCCCcccHHHHHHHHHHHHhc---C
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG--ATRFCMGAAWRELKDRDLDNIENMICEVKKI---G 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G--~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~ 146 (348)
.-||+.+|.||..... +. .+.++.+||++++..+...| ++.|.|.|-|++. .. ..+.++++.+++. +
T Consensus 107 qvGC~~~C~FC~tg~~---g~--~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPL--ln-~~v~~~i~~l~~~~~~~ 178 (347)
T PRK14453 107 QCGCGFGCRFCATGSI---GL--KRNLTADEITDQLLYFYLNGHRLDSISFMGMGEAL--AN-PELFDALKILTDPNLFG 178 (347)
T ss_pred CCCcCCCCCCCCCCCC---CC--cccCCHHHHHHHHHHHHhcCCCcceEEEeecCCcc--CC-HHHHHHHHHHhcccccC
Confidence 6789999999987642 21 23489999999988766554 8888888833533 33 3577887777752 2
Q ss_pred cE---EEEe-cCCCCHHHHHHHHHh-CCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHH-HcCCe--eeEeEe
Q psy8190 147 LE---TCLT-LGMLNENQAYRLKKV-GLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVR-NVGIN--ICCGGI 214 (348)
Q Consensus 147 ~~---i~~~-~g~l~~e~l~~Lk~a-G~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~-~~G~~--i~~~~i 214 (348)
+. ++++ .|..+ .++.|.+. .-..+.+++-+ +++..+++.+ ....++.+++++... +.|.+ +..-+|
T Consensus 179 ~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI 256 (347)
T PRK14453 179 LSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIML 256 (347)
T ss_pred CCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeE
Confidence 22 5555 45443 23333333 12335557788 6777776655 346777777765543 46654 456777
Q ss_pred eecCCCHHHHHHHHHHHHhcCC--CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8190 215 IGLSESRDQRAELIFQLANLNP--YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 215 ~Glget~e~~~~~l~~l~~l~~--~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
-|+..+.+++.+.+++++.+.. .+..|.+-+|+|.++.+ .+..+++.+++.++..+.+..=-...+|-+.|
T Consensus 257 ~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~-~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 329 (347)
T PRK14453 257 EGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTP-FKFQSSSAGQIKQFCSTLKSAGISVTVRTQFG 329 (347)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCC-ccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 7888999999999999998731 14678888888887643 34567888888777777765422234554443
No 142
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.11 E-value=8e-09 Score=95.38 Aligned_cols=171 Identities=11% Similarity=0.149 Sum_probs=122.2
Q ss_pred cCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+.+++.+.+..... .+...|.|+|| + | ....+.+.++++.+++.++.+.+ +.|.+..+.+..+.+ .++.+.
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGG-E-P-ll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~-~~d~~~ 181 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGG-E-P-LLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLP-YVDLFL 181 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCc-c-h-hchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHh-hCCEEE
Confidence 467888877765432 23457889887 4 3 23556678999999988876655 456777777777776 478888
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE--eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~--~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
+++.+ +++.++.+.+ .+++..++.++.+.+.|..+.+ .++.|+..+.+++.+.++++.+++..+..+.+.+|.|.+
T Consensus 182 isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g 260 (295)
T TIGR02494 182 FDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLG 260 (295)
T ss_pred EeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCCchh
Confidence 88998 6888888764 4788999999999999976544 445566778899999999999986223577788888865
Q ss_pred CCCC---------CCCCCCCHHHHHHHHHHHH
Q psy8190 251 GTPL---------YGSSILDPLEFIRTIAVAR 273 (348)
Q Consensus 251 gT~l---------~~~~~~~~~~~~~~~a~~R 273 (348)
..++ .+.+.++.+++.++...++
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 292 (295)
T TIGR02494 261 ENKYRQLGREYPDSEIPDPAEEQLLELKEIFE 292 (295)
T ss_pred HHHHHHhCCCCccCCCCCCCHHHHHHHHHHHH
Confidence 4332 3445678777777655443
No 143
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.09 E-value=2.6e-08 Score=92.64 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=134.4
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----C
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKKI----G 146 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~ 146 (348)
..+|+.+|.||..... +..+ .++.+||++++..+.+. .++.|.|.|-|+ | ....+.+.+.++.+.+. .
T Consensus 103 QvGC~~~C~FC~tg~~---g~~R--nLs~~EI~~Qv~~~~~~~~i~nIVfmGmGE-P-l~N~d~vl~ai~~l~~~~~i~~ 175 (344)
T PRK14464 103 QVGCAVGCVFCMTGRS---GLLR--QLGSAEIVAQVVLARRRRAVKKVVFMGMGE-P-AHNLDNVLEAIDLLGTEGGIGH 175 (344)
T ss_pred cCCcCCCCCcCcCCCC---CCCC--CCCHHHHHHHHHHHHhcCCCCEEEEeccCc-c-cCCHHHHHHHHHHhhchhcCCC
Confidence 7899999999986542 2222 47999999998877653 588998888445 3 24567777777776542 2
Q ss_pred cEEEEecCCCCHHHHHHHHHhCCC-eeeccCCC-CHHHHhccCCC---CCHHHHHHHHHHHH-HcCCeee--EeEeeecC
Q psy8190 147 LETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVGINIC--CGGIIGLS 218 (348)
Q Consensus 147 ~~i~~~~g~l~~e~l~~Lk~aG~~-~i~~g~et-~~e~l~~i~~~---~~~~~~~~~i~~~~-~~G~~i~--~~~i~Glg 218 (348)
..++++.--+ .+..+.|.+.++. .+.+++.+ +++.++.+.|. .+.++.+++++... +.|-.+. ..++=|..
T Consensus 176 r~itiST~G~-~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvLl~GVN 254 (344)
T PRK14464 176 KNLVFSTVGD-PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTLLEGVN 254 (344)
T ss_pred ceEEEecccC-chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCC
Confidence 3444443212 2335666665443 45568888 68999988773 48888888887654 4676554 34444778
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8190 219 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 286 (348)
Q Consensus 219 et~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g 286 (348)
.+.++..+..++++.+. -.+.+-+|.|.+|+++. .++.+...++....+..=-...+|-+.|
T Consensus 255 Ds~e~a~~L~~~l~~~~---~~vNLIPyN~v~g~~~~---rp~~~~i~~f~~~L~~~gi~~tiR~~~G 316 (344)
T PRK14464 255 DSDEEMDGIVRLLKGKY---AVMNLIPYNSVDGDAYR---RPSGERIVAMARYLHRRGVLTKVRNSAG 316 (344)
T ss_pred CCHHHHHHHHHHHhccc---cccceecCCccCCCCcc---CCCHHHHHHHHHHHHHCCceEEEECCCC
Confidence 99999999999988774 57788888888888653 4666766676666655322233454433
No 144
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.06 E-value=2.3e-08 Score=94.50 Aligned_cols=187 Identities=15% Similarity=0.178 Sum_probs=128.0
Q ss_pred cCC-CCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCE--EEEeccCCCCCcccHHHHHHHHHHHHh--c
Q psy8190 72 TGG-CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATR--FCMGAAWRELKDRDLDNIENMICEVKK--I 145 (348)
Q Consensus 72 t~~-C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~--i~l~gg~~~~~~~~~~~~~~l~~~i~~--~ 145 (348)
|.. |+.+|.||........ ++.++.+.+.+.++.+.+. +... |.+.|| + |.....+.+..+.....+ .
T Consensus 14 t~~~CNL~C~YC~~~~~~~~----~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GG-E-PlL~~~~f~~~~~~l~~k~~~ 87 (378)
T COG0641 14 TGFECNLDCKYCFYLEKESL----QRIMSDETLEEYVRQYIAASNGDKVTFTWQGG-E-PLLAGLDFYRKAVALQQKYAN 87 (378)
T ss_pred ccCccCCCCCeeCcccCCCC----CCCCCHHHHHHHHHHHHhhCCCCeeEEEEECC-c-cccchHHHHHHHHHHHHHHhc
Confidence 566 9999999998874321 1247887777777776654 4455 777888 4 322223333333332222 1
Q ss_pred CcEEE----EecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCC----CCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 146 GLETC----LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 146 ~~~i~----~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~----~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+..++ +|.-+++++.++.|++.|+ .|.++++..+++.++.++ ..+++.+++.++.+++.++.+++... .
T Consensus 88 ~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~v--v 164 (378)
T COG0641 88 GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTV--V 164 (378)
T ss_pred CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEE--E
Confidence 44433 4556899999999999999 899999988888887764 24899999999999999888766645 5
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC--CCCCCCCCHHHHHHHHH
Q psy8190 218 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP--LYGSSILDPLEFIRTIA 270 (348)
Q Consensus 218 -get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~--l~~~~~~~~~~~~~~~a 270 (348)
.++.++..+.++++.+.+ ...+.|.++++..++- +... ..+++++.+.+.
T Consensus 165 ~~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~~-~~~~~~~~~fl~ 217 (378)
T COG0641 165 NRQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLEF-SVTAEEYGQFLI 217 (378)
T ss_pred chhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCcccccc-ccCHHHHHHHHH
Confidence 788888888999998888 7788886666554432 2322 234555544443
No 145
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.03 E-value=8.2e-08 Score=89.52 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=128.8
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-----------------CCCCEEEEeccCCCCCcccHHH
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----------------DGATRFCMGAAWRELKDRDLDN 134 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----------------~G~~~i~l~gg~~~~~~~~~~~ 134 (348)
--||+.+|.||+.... +. .+-++..||++++..+.+ ..++.|+|-|-|++ ..+.+.
T Consensus 114 QvGC~mgC~FCaTG~~---G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEP--L~Nydn 186 (371)
T PRK14461 114 QAGCGMGCVFCATGTL---GL--LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEP--FANYDR 186 (371)
T ss_pred cCCccCCCCcccCCCC---Cc--ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCc--hhhHHH
Confidence 4699999999986653 22 235899999999876542 12566666554453 346677
Q ss_pred HHHHHHHHHhc-Cc-----EEEEecCCCCHHHHHHHHHhCC-CeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHH
Q psy8190 135 IENMICEVKKI-GL-----ETCLTLGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVR 203 (348)
Q Consensus 135 ~~~l~~~i~~~-~~-----~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~ 203 (348)
+.+.++.+.+. ++ .+++|.--+.+ .++.|.+-+. -.+.+++-+ ++++.+.+-| ..+.++.+++++...
T Consensus 187 V~~ai~il~d~~g~~is~R~ITVST~Givp-~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~ 265 (371)
T PRK14461 187 WWQAVERLHDPQGFNLGARSMTVSTVGLVK-GIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYI 265 (371)
T ss_pred HHHHHHHhcCccccCcCCCceEEEeecchh-HHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence 77777777652 22 45665433333 3555665543 356677888 6889888776 458899999987764
Q ss_pred -HcCCeee--EeEeeecCCCHHHHHHHHHHHHhcCCC---CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 204 -NVGINIC--CGGIIGLSESRDQRAELIFQLANLNPY---PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 204 -~~G~~i~--~~~i~Glget~e~~~~~l~~l~~l~~~---~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
+.|-.|. -.+|=|...+.++..+..+.++.+... .-+|.+-+|.|.+|+++. +++.+.+.+...+.+.
T Consensus 266 ~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~---~ps~~~i~~F~~~L~~ 339 (371)
T PRK14461 266 AKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG---RSERERVTTFQRILTD 339 (371)
T ss_pred HhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC---CCCHHHHHHHHHHHHH
Confidence 4565554 445557789999999999999877210 247888899999998764 4677766666666554
No 146
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=98.97 E-value=1.3e-07 Score=82.70 Aligned_cols=170 Identities=12% Similarity=0.131 Sum_probs=133.4
Q ss_pred cCHHHHHHHHHHHHh---CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~---~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++++++++++..-.. .+-..|.|+|| + | ....+.+.++++.+++.++++++ +.|..+.+.++.+... +|.+.
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGG-E-P-llq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~D~~l 94 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGG-E-V-LMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-CDEVL 94 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCc-h-H-HcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-cCEEE
Confidence 799999998876433 24467999988 3 3 34678899999999999998877 4678888888888876 89999
Q ss_pred ccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe--eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 174 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN--ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 174 ~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~--i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
+.+-+ +++.++.+. +.+.+.+++.++.+.+.|.. +...+|-|+..+.+++....+++.+++ ++.+.+.+|+|..
T Consensus 95 ~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~--~~~~~llpyh~~g 171 (213)
T PRK10076 95 FDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG--IKQIHLLPFHQYG 171 (213)
T ss_pred EeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEecCCccc
Confidence 99988 788888875 46789999999999999874 567788888888899999999999997 7778888888752
Q ss_pred C---------CCCCCCCCCCHHHHHHHHHHHHH
Q psy8190 251 G---------TPLYGSSILDPLEFIRTIAVARI 274 (348)
Q Consensus 251 g---------T~l~~~~~~~~~~~~~~~a~~R~ 274 (348)
- -++.+.++++.+.+.++..+++.
T Consensus 172 ~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~ 204 (213)
T PRK10076 172 EPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred hhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHH
Confidence 2 23445567777777676666654
No 147
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.90 E-value=3.1e-07 Score=81.99 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=88.4
Q ss_pred cCCCCCCCCcCCCCCCCCCC-CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 150 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~ 150 (348)
+.+|+.+|.||.....+... ...+..++.+++++.++.....|+..|.|+|| + |.. .+.+.++++.+++.++.+.
T Consensus 29 ~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGG-E-Pll--~~~l~~li~~l~~~g~~v~ 104 (238)
T TIGR03365 29 TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGG-N-PAL--QKPLGELIDLGKAKGYRFA 104 (238)
T ss_pred eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCC-c-hhh--hHhHHHHHHHHHHCCCCEE
Confidence 78999999999976532211 11233478999999988776667889999998 4 322 2478899999998888877
Q ss_pred Ee-cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee
Q psy8190 151 LT-LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG 216 (348)
Q Consensus 151 ~~-~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G 216 (348)
+. +|.+..+. +++ ++.+.+++.. +. .....++...++++.+++ |..+..-++++
T Consensus 105 leTNGtl~~~~---l~~--~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 105 LETQGSVWQDW---FRD--LDDLTLSPKPPSS------GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred EECCCCCcHHH---Hhh--CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 64 56665542 443 4577777765 22 112357777888888887 66666666666
No 148
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.89 E-value=3.8e-07 Score=82.72 Aligned_cols=220 Identities=15% Similarity=0.192 Sum_probs=153.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|+..|-++++...+.....+...++++.+++.. ..+.+-. .-..+.++.++++|++.+.+
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~-~~~~~~i~~a~~~g~~~i~i 93 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV-RNREKGIERALEAGVDEVRI 93 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc-cCchhhHHHHHhCCcCEEEE
Confidence 36999999999999999999999987732111111234566677776643 4443211 11288899999999999999
Q ss_pred cCCCCHHHHh--ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecC--CCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 175 NLDTSPKLYG--DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 175 g~et~~e~l~--~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glg--et~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
.+.+++ .+. ..+++ ..++...++++.+++.|+.+...++.-.. .+++++.+.++.+.+++ ++.+.+.-
T Consensus 94 ~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~i~l~D--- 167 (265)
T cd03174 94 FDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG--ADEISLKD--- 167 (265)
T ss_pred EEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--CCEEEech---
Confidence 887764 333 23343 37889999999999999999888766666 99999999999999998 77776332
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---eeCCeeccCCCCCchH
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLTTDNTKTND 322 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~~~ 322 (348)
| ....+|+++.+++...|..+|+. .+...-|+ +..-....|+.+||+.+ +.|-- -.+.+.+.++
T Consensus 168 ---t----~G~~~P~~v~~li~~l~~~~~~~--~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~Gn~~~e~ 237 (265)
T cd03174 168 ---T----VGLATPEEVAELVKALREALPDV--PLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERAGNAATED 237 (265)
T ss_pred ---h----cCCcCHHHHHHHHHHHHHhCCCC--eEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccccCccHHH
Confidence 2 23468899999999999988873 33221222 22345667899999887 22110 0123344578
Q ss_pred HHHHHHHcCCC
Q psy8190 323 DSKLLKKLGIN 333 (348)
Q Consensus 323 ~~~~i~~~G~~ 333 (348)
....++..|+.
T Consensus 238 ~~~~l~~~~~~ 248 (265)
T cd03174 238 LVAALEGLGID 248 (265)
T ss_pred HHHHHHhcCCC
Confidence 88899999865
No 149
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.9e-07 Score=85.42 Aligned_cols=173 Identities=15% Similarity=0.212 Sum_probs=111.8
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCC-CccccccCHHH-HHHHHHHH-HhCCC--CEEEEeccCCCCCcccHHHHHHHHHH
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIES-VITAAQKA-KSDGA--TRFCMGAAWRELKDRDLDNIENMICE 141 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~ee-i~~~~~~~-~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~ 141 (348)
.++. -.||.+.|.||......... ..++. ..+++ +.+.++.- .+.+. ..|.+++. ++|+ .+.+.-..+.+.
T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~-v~vk~n~~e~l~~el~~~~~k~~~i~is~~-TDpy-qp~E~~~~ltR~ 107 (297)
T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTK-VNVKENLLELLERELRKPGPKRTVIAISSV-TDPY-QPIEKEYRLTRK 107 (297)
T ss_pred ecCC-cCCCCCCCceeecccccccccCCCce-eeechhHHHHHHHHHhhccCCceEEEEecC-CCCC-CcchHHHHHHHH
Confidence 3455 78999999999977532211 11222 33444 66666543 33333 34555544 4553 343443344433
Q ss_pred H----HhcCcEEEEecCC-C---CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeE
Q psy8190 142 V----KKIGLETCLTLGM-L---NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 142 i----~~~~~~i~~~~g~-l---~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
+ ...+..+.+.+-. + +-+.+..++.-+..+|.+.+-| ++++-+.+-|. -+.++++++++.+.++|+++..
T Consensus 108 ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v 187 (297)
T COG1533 108 ILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGL 187 (297)
T ss_pred HHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3 3456666655442 2 4566777777787889999988 56788888775 4899999999999999998876
Q ss_pred eEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 212 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 212 ~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
.+--=+ +.+++++.+.+..+.+.+ +..+....
T Consensus 188 ~v~PIiP~~~d~e~e~~l~~~~~ag--~~~v~~~~ 220 (297)
T COG1533 188 FVAPIIPGLNDEELERILEAAAEAG--ARVVVYGT 220 (297)
T ss_pred EEecccCCCChHHHHHHHHHHHHcC--CCeeEeee
Confidence 543334 667799999999888887 66654433
No 150
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.76 E-value=2.2e-07 Score=76.01 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=103.8
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 146 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~ 146 (348)
....+-||+..|.||...........+...++|+|+.+.+.++ ++.|.+.|.++|+ + | ....+.++++++.+-...
T Consensus 44 aTAD~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~-E-P-~l~~EHvlevIeLl~~~t 120 (228)
T COG5014 44 ATADTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGA-E-P-ILGREHVLEVIELLVNNT 120 (228)
T ss_pred eeccccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCC-C-c-cccHHHHHHHHHhccCce
Confidence 3344789999999998543111122344468999999887665 5679999999988 3 3 345688999998876544
Q ss_pred cEEEEecCCC--CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC--CCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 147 LETCLTLGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 147 ~~i~~~~g~l--~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
+-+.+|.-.+ ++..++.|...--..|-+++.. +++-|.+|.. +.-+..-+++++.+++.|+.+..-+++++
T Consensus 121 FvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f 196 (228)
T COG5014 121 FVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDF 196 (228)
T ss_pred EEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhcc
Confidence 4444443333 7777888776433345556677 7899988863 22467778999999999999988889988
No 151
>KOG2535|consensus
Probab=98.75 E-value=6.8e-07 Score=80.82 Aligned_cols=131 Identities=11% Similarity=0.127 Sum_probs=99.1
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHH-HH
Q psy8190 148 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRD-QR 224 (348)
Q Consensus 148 ~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e-~~ 224 (348)
.+...+.--....+..|...|++++.+|+|| -+++-+.-+++|+...+.+++..++++|+++.+++|-.+ .-..| |+
T Consensus 226 TIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDi 305 (554)
T KOG2535|consen 226 TIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDI 305 (554)
T ss_pred EeecCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhH
Confidence 3334455445567889999999999999999 588888899999999999999999999999999999887 43332 33
Q ss_pred HHHHHHHHhcCCCCCeeecccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy8190 225 AELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 225 ~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~------~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
....+++..-.-.+|.+.+++-....||-+++ ...-++....+++|..-.+.|.
T Consensus 306 eqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPP 365 (554)
T KOG2535|consen 306 EQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPP 365 (554)
T ss_pred HHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCc
Confidence 33333333221147888899988899998874 3567788888887766656665
No 152
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.67 E-value=3e-06 Score=77.75 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=132.7
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhC-CCCEEEEeccCCCCCcccHHHHHHHHHHHHhc
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKKI 145 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~ 145 (348)
++-. |.+|+..|.||--+...... .. .++.+++...+.++.+. -+.+|.|+|| +|.......+..+++++++.
T Consensus 114 Lll~-t~~C~vyCRyCfRr~~~~~~--~~-~~~~~~~~~al~YIa~hPeI~eVllSGG--DPL~ls~~~L~~ll~~L~~I 187 (369)
T COG1509 114 LLLV-TGVCAVYCRYCFRRRFVGQD--NQ-GFNKEEWDKALDYIAAHPEIREVLLSGG--DPLSLSDKKLEWLLKRLRAI 187 (369)
T ss_pred EEEe-cCcccceeeecccccccccc--cc-cCCHHHHHHHHHHHHcCchhheEEecCC--CccccCHHHHHHHHHHHhcC
Confidence 4455 99999999999866543222 11 14788888888887765 4889999998 35456778888999888874
Q ss_pred ----CcEEE-----EecCCCCHHHHHHHHHhCCCeeeccC--CCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--Ee
Q psy8190 146 ----GLETC-----LTLGMLNENQAYRLKKVGLDYYNHNL--DTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CG 212 (348)
Q Consensus 146 ----~~~i~-----~~~g~l~~e~l~~Lk~aG~~~i~~g~--et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~ 212 (348)
.+.++ +.|.-++++..+.|++.+. .+.+.. .+..| -..+..++++.++++|+.+. +-
T Consensus 188 pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~-~v~~~tH~NHp~E---------it~e~~~A~~~L~~aGv~l~NQsV 257 (369)
T COG1509 188 PHVKIIRIGTRLPVVLPQRITDELCEILGKSRK-PVWLVTHFNHPNE---------ITPEAREACAKLRDAGVPLLNQSV 257 (369)
T ss_pred CceeEEEeecccceechhhccHHHHHHHhccCc-eEEEEcccCChhh---------cCHHHHHHHHHHHHcCceeecchh
Confidence 23333 2466778888888888653 333321 11111 12467789999999999764 55
Q ss_pred EeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy8190 213 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 279 (348)
Q Consensus 213 ~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~ 279 (348)
++=|...+++-+.+.+..+-..+ +.--.++..-+.+|+.-+ ..+.++..+++...|-.++..
T Consensus 258 LLrGVND~~evl~~L~~~L~~~g--V~PYYl~~~D~~~G~~hf---r~~i~~~~~i~~~lr~~~SG~ 319 (369)
T COG1509 258 LLRGVNDDPEVLKELSRALFDAG--VKPYYLHQLDLVQGAAHF---RVPIAEGLQIVEELRGRTSGY 319 (369)
T ss_pred eecccCCCHHHHHHHHHHHHHcC--CcceEEeccCccCCccce---eccHHHHHHHHHHHHHhCCCc
Confidence 66688999999999988888887 333334444455666532 467889999999999877663
No 153
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.66 E-value=3.1e-06 Score=78.09 Aligned_cols=173 Identities=15% Similarity=0.187 Sum_probs=114.6
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CC------CCEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DG------ATRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G------~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
--||+..|.||+.... + -.+-++..||++++..+.+ .| +..|+|-|=|++ ..+.+.+...++.+..
T Consensus 108 QvGC~~~C~FCaTg~~---G--~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP--l~N~dnV~~a~~i~~~ 180 (349)
T COG0820 108 QVGCPVGCTFCATGQG---G--LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP--LLNLDNVVKALEIIND 180 (349)
T ss_pred CCCcCCCCCeeccccc---c--ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCch--hhhHHHHHHHHHhhcC
Confidence 4689999999997653 2 2235899999999887653 23 344555443352 4577888888888875
Q ss_pred -cCc-----EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeee--E
Q psy8190 145 -IGL-----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINIC--C 211 (348)
Q Consensus 145 -~~~-----~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~--~ 211 (348)
.|+ .+++++.-+.+...+...+.+=-.+.+++-+ +++..+.+-| ..+.++.+++++.-.+ .|..|+ -
T Consensus 181 ~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY 260 (349)
T COG0820 181 DEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEY 260 (349)
T ss_pred cccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCceEEEEe
Confidence 232 3566665555554444433333457778888 6788777665 4478888888887654 455554 3
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
.++=|.....++-.+.++.+..+ +.+|.+-||.|.||+.+
T Consensus 261 ~Ll~~VND~~e~A~~L~~ll~~~---~~~VNLIP~Np~~~~~y 300 (349)
T COG0820 261 VLLDGVNDSLEHAKELAKLLKGI---PCKVNLIPYNPVPGSDY 300 (349)
T ss_pred eecccccCCHHHHHHHHHHhcCC---CceEEEeecCCCCCCCc
Confidence 34445555577766666666666 45888999999999884
No 154
>KOG2876|consensus
Probab=98.55 E-value=9e-08 Score=83.49 Aligned_cols=190 Identities=19% Similarity=0.330 Sum_probs=134.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G 146 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~ 146 (348)
+++ |..|+.+|.||-.+...... +.-++++..+++..+......|+..+-+.||. |+- ...+.+++..+.+. +
T Consensus 15 isl-te~cnlrc~ycMpsegv~l~-pk~~~lav~eilrl~~~F~~qgv~knrLtgge--ptI--r~di~~i~~g~~~l~g 88 (323)
T KOG2876|consen 15 ISL-TEKCNLRCQYCMPSEGVPLK-PKRKLLAVSEILRLAGLFAPQGVDKNRLTGGE--PLI--RQDIVPIVAGLSSLPG 88 (323)
T ss_pred hhh-hhccccccceechhcCCcCc-cchhhcchhhhHHhhhhhhHhhhhhhhhcCCC--Ccc--cccccchhhhhhcccc
Confidence 455 89999999999876532111 22345789999999999999999999999883 322 14556666666552 2
Q ss_pred c---EEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCC---eeeEeEeeecCC
Q psy8190 147 L---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI---NICCGGIIGLSE 219 (348)
Q Consensus 147 ~---~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~---~i~~~~i~Glge 219 (348)
+ .++ +.|.+....+-.|+++|++.++++++| .+.-+..+.+...+..++..++.+.+.|. ++++-++=|+.+
T Consensus 89 Lks~~IT-tng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~ 167 (323)
T KOG2876|consen 89 LKSIGIT-TNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNE 167 (323)
T ss_pred hhhhcee-ccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCC
Confidence 2 232 456777788899999999999999999 78888888888899999999999999886 356666666622
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHH
Q psy8190 220 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 269 (348)
Q Consensus 220 t~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~ 269 (348)
+++.+....- +.. +--+.+-.|+|.-|.........+..+.++++
T Consensus 168 --~ev~Dfv~~t-r~~--p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~ 212 (323)
T KOG2876|consen 168 --DEVFDFVLLT-RMR--PLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLI 212 (323)
T ss_pred --Ccccceeeec-CCC--CcceEEEEecccCCCcccccccccHHHHHHHH
Confidence 2233333222 232 56677788899888877665556555544443
No 155
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=98.49 E-value=0.00012 Score=68.57 Aligned_cols=210 Identities=15% Similarity=0.142 Sum_probs=145.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEecc------CC---CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAA------WR---ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg------~~---~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
++.+++.+.++.+.+.|+..|-++-| .. .+...+.+++.++.+.++...+...+.+|.-+.+.++...++|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 78999999999999999999866411 00 1222356666666666554334444567777788999999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.+ ..+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.+ ++.+.+
T Consensus 101 vd~iri~~~~~-----------e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i----- 162 (333)
T TIGR03217 101 ARTVRVATHCT-----------EADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYI----- 162 (333)
T ss_pred CCEEEEEeccc-----------hHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEE-----
Confidence 99988654211 234577899999999999988888877889999999999999988 666432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccc--hhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMG--ETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~-~l~--~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
..| ....+|+++.+++...|..++. .+++.-.-| +++ --....++.+||+.+ +. |. .+.+.+.
T Consensus 163 -~DT----~G~~~P~~v~~~v~~l~~~l~~-~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~---~aGN~~~ 233 (333)
T TIGR03217 163 -VDS----AGAMLPDDVRDRVRALKAVLKP-ETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA---GAGNAPL 233 (333)
T ss_pred -ccC----CCCCCHHHHHHHHHHHHHhCCC-CceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccc---cccCccH
Confidence 222 2346788999999999988863 122221112 233 234566899999987 11 11 1333445
Q ss_pred hHHHHHHHHcCCCc
Q psy8190 321 NDDSKLLKKLGINT 334 (348)
Q Consensus 321 ~~~~~~i~~~G~~p 334 (348)
+.....+++.|+.+
T Consensus 234 E~lv~~l~~~g~~t 247 (333)
T TIGR03217 234 EVFVAVLDRLGWNT 247 (333)
T ss_pred HHHHHHHHhcCCCC
Confidence 77888899999874
No 156
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.43 E-value=5.4e-07 Score=73.40 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=53.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHhcCc--E
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKKIGL--E 148 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~~~~--~ 148 (348)
+++|+.+|.||..+..+... ....++.+.+.+.++.+.+.++..|.|.|| + |.. ...+.+.++++.+++.+. .
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~~~~~i~l~GG-E-Pll~~~~~~l~~i~~~~k~~~~~~~ 87 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFK--RGKELSEEIIEEIIEELKNYGIKGIVLTGG-E-PLLHENYDELLEILKYIKEKFPKKI 87 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT---SEEC-HHHHHHHCHHHCCCCCCEEEEECS-T-GGGHHSHHHHHHHHHHHHHTT-SEE
T ss_pred cCcccccCcCcCCcccCccc--ccccccchhhhhhhhHHhcCCceEEEEcCC-C-eeeeccHhHHHHHHHHHHHhCCCCe
Confidence 67899999999876543222 222356666666667776788999999987 4 321 257899999999998755 3
Q ss_pred EEEecCCCCHHHHHHHHHh
Q psy8190 149 TCLTLGMLNENQAYRLKKV 167 (348)
Q Consensus 149 i~~~~g~l~~e~l~~Lk~a 167 (348)
+..+.|....+....+...
T Consensus 88 ~~~tng~~~~~~~~~~~~~ 106 (139)
T PF13353_consen 88 IILTNGYTLDELLDELIEE 106 (139)
T ss_dssp EEEETT--HHHHHHHHHHH
T ss_pred EEEECCCchhHHHhHHHHh
Confidence 4456676666555433333
No 157
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=98.42 E-value=2.8e-05 Score=69.34 Aligned_cols=215 Identities=15% Similarity=0.211 Sum_probs=140.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHH-HHHHHHhCCCeeeccC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQ-AYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~-l~~Lk~aG~~~i~~g~ 176 (348)
++.++.++.++.+.+.|+..|-++.. .....+.+.+.++.+.+....+...+.+..-+-+. ++.++++|++.+.+..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~ 88 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFP--FASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFI 88 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHC--TSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEccc--ccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecC
Confidence 68999999999999999999988632 12334566677666666653333333443333333 6667789999999887
Q ss_pred CCCHHHHh-ccCC--CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 177 DTSPKLYG-DIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 177 et~~e~l~-~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
..++...+ .++. ....+...++++.+++.|+.+..+.+.....+++++.+..+.+.+++ ++.+.+. .|
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~l~------Dt- 159 (237)
T PF00682_consen 89 SVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADIIYLA------DT- 159 (237)
T ss_dssp ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SEEEEE------ET-
T ss_pred cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeEEEee------Cc-
Confidence 77654443 3332 12466777889999999999987777766678899999999999998 7776432 22
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCcceee---e--CCeeccCCCCCchHHHH
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTKTNDDSK 325 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~~---~--~~~~~~~~g~~~~~~~~ 325 (348)
....+|.++.+++...|..+|+..|.+ ..|| ++ .-....++.+||+.+= . |+ .+.+.+.++...
T Consensus 160 ---~G~~~P~~v~~lv~~~~~~~~~~~l~~--H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~---~~Gn~~le~lv~ 231 (237)
T PF00682_consen 160 ---VGIMTPEDVAELVRALREALPDIPLGF--HAHNDLGLAVANALAALEAGADRIDGTLGGLGE---RAGNAPLEELVA 231 (237)
T ss_dssp ---TS-S-HHHHHHHHHHHHHHSTTSEEEE--EEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS---TTSB-BHHHHHH
T ss_pred ---cCCcCHHHHHHHHHHHHHhccCCeEEE--EecCCccchhHHHHHHHHcCCCEEEccCccCCC---CCCCccHHHHHH
Confidence 234578899999999999999833332 1232 22 3345668999999982 1 11 123334578888
Q ss_pred HHHHcC
Q psy8190 326 LLKKLG 331 (348)
Q Consensus 326 ~i~~~G 331 (348)
.++.+|
T Consensus 232 ~L~~~g 237 (237)
T PF00682_consen 232 ALERMG 237 (237)
T ss_dssp HHHHT-
T ss_pred HHhhcC
Confidence 888776
No 158
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=98.40 E-value=0.00025 Score=66.54 Aligned_cols=209 Identities=15% Similarity=0.142 Sum_probs=140.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccC------C--C-CCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAW------R--E-LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~------~--~-~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
++.+++++.++.+.+.|+..|-++-|. . . +...+.+.+..+.+.++...+...+.+|.-+.+.++...++|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 789999999999999999998664110 0 1 111234444444444332233333456766788899999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.+ ..+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.+ ++.+.+
T Consensus 102 vd~iri~~~~~-----------e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i----- 163 (337)
T PRK08195 102 VRVVRVATHCT-----------EADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYV----- 163 (337)
T ss_pred CCEEEEEEecc-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEe-----
Confidence 99887654111 234678899999999999998888877778999999999999998 766432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceecccccc-ccc--hhhHHHHHHhCcceee---e--CCeeccCCCCC
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRK-EMG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTK 319 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~-~l~--~~~~~~~l~~GAn~~~---~--~~~~~~~~g~~ 319 (348)
..| .....|+++.+++...|..++ +..+.+- -| +++ .-....++.+||+.+= . |. .+.+.+
T Consensus 164 -~DT----~G~~~P~~v~~~v~~l~~~l~~~i~ig~H--~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~---~aGN~~ 233 (337)
T PRK08195 164 -VDS----AGALLPEDVRDRVRALRAALKPDTQVGFH--GHNNLGLGVANSLAAVEAGATRIDGSLAGLGA---GAGNTP 233 (337)
T ss_pred -CCC----CCCCCHHHHHHHHHHHHHhcCCCCeEEEE--eCCCcchHHHHHHHHHHhCCCEEEecChhhcc---cccCcc
Confidence 222 234678899999999998884 4333221 12 232 2345668999999871 1 11 233344
Q ss_pred chHHHHHHHHcCCCc
Q psy8190 320 TNDDSKLLKKLGINT 334 (348)
Q Consensus 320 ~~~~~~~i~~~G~~p 334 (348)
.++....+.+.|+..
T Consensus 234 tE~lv~~L~~~g~~t 248 (337)
T PRK08195 234 LEVLVAVLDRMGWET 248 (337)
T ss_pred HHHHHHHHHhcCCCC
Confidence 577788888888863
No 159
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.34 E-value=1e-05 Score=66.54 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=67.7
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL 151 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~ 151 (348)
..+|+.+|.||..+..+... ....++.+++.+.++.... .+..|.|+|| + ...+.+.++++.+++.++.+.+
T Consensus 22 l~GCnlrC~~C~n~~~~~~~--~g~~lt~eel~~~I~~~~~-~~~gVt~SGG-E----l~~~~l~~ll~~lk~~Gl~i~l 93 (147)
T TIGR02826 22 ITGCPLGCKGCHSPESWHLS--EGTKLTPEYLTKTLDKYRS-LISCVLFLGG-E----WNREALLSLLKIFKEKGLKTCL 93 (147)
T ss_pred eCCCCCCCCCCCChHHcCCC--CCcCCCHHHHHHHHHHhCC-CCCEEEEech-h----cCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999987654321 1124789999998876542 3678999998 4 3557899999999998888877
Q ss_pred ecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 152 TLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
..|...++..+.+.+. +|.+..|.
T Consensus 94 ~Tg~~~~~~~~~il~~-iD~l~~g~ 117 (147)
T TIGR02826 94 YTGLEPKDIPLELVQH-LDYLKTGR 117 (147)
T ss_pred ECCCCCHHHHHHHHHh-CCEEEECh
Confidence 7675555555455433 56666543
No 160
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.34 E-value=4.5e-05 Score=67.95 Aligned_cols=191 Identities=12% Similarity=0.067 Sum_probs=122.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-
Q psy8190 73 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL- 151 (348)
Q Consensus 73 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~- 151 (348)
.+|+++|.||.....+..+. .. ..+++++.+.+....+.|++.|.++||. |+ ..+.++++.++.+... +++-.
T Consensus 126 sgCnfrCVfCQNwdISq~~~-g~-~v~~e~La~i~~~~~~~GakNvN~Vgg~--Pt-p~lp~Ile~l~~~~~~-iPvvwN 199 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGI-GK-EVTPEDLAEIILELRRHGAKNVNFVGGD--PT-PHLPFILEALRYASEN-IPVVWN 199 (335)
T ss_pred cCcceEEEEecCccccccCC-Ce-EecHHHHHHHHHHHHHhcCcceeecCCC--CC-CchHHHHHHHHHHhcC-CCEEEe
Confidence 69999999999665432222 22 4789999999999999999999999983 33 2567888888887765 44433
Q ss_pred ecCCCCHHHHHHHHHhCCCeeecc-CCC-CHHHHhccCCCC-CHHHHHHHHHHHHHc--CCeeeEeEeeecCCCHHHHHH
Q psy8190 152 TLGMLNENQAYRLKKVGLDYYNHN-LDT-SPKLYGDIISTR-DYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAE 226 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g-~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~--G~~i~~~~i~Glget~e~~~~ 226 (348)
+.+-.+.|.++.|. |+--|.++ +-= +++--.+..+.. -++-+-+.+..+.+. |+-|..-+|-|+-|. --..
T Consensus 200 SnmY~s~E~l~lL~--gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlec--CTkp 275 (335)
T COG1313 200 SNMYMSEETLKLLD--GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLEC--CTKP 275 (335)
T ss_pred cCCccCHHHHHHhh--ccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhh--ccHH
Confidence 46688999999887 55455553 444 455555554433 455566777777664 466666667777221 0234
Q ss_pred HHHHHHhcCCCCCeeec---ccccccCCC-CCCC-CCCCCHHHHHHHHHHHHHH
Q psy8190 227 LIFQLANLNPYPESVPI---NNLVQIKGT-PLYG-SSILDPLEFIRTIAVARIT 275 (348)
Q Consensus 227 ~l~~l~~l~~~~~~i~~---~~l~P~~gT-~l~~-~~~~~~~~~~~~~a~~R~~ 275 (348)
.++++.+.- +..+.+ ..+.|.--. .+.+ ...++.+|+.+.+..++-+
T Consensus 276 I~~wiae~~--g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 276 ILRWIAENL--GNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred HHHHHHHhC--CCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHc
Confidence 556677664 334333 345554211 1111 2457888998888888754
No 161
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=98.27 E-value=0.001 Score=60.40 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=137.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEecc-----C-C---CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAA-----W-R---ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg-----~-~---~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
.+.++.++.++.+.+.|+..+-++.. . . .+...+.+.+..+.+......+...+.++....+.++...++|
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g 98 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLG 98 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcC
Confidence 78999999999999999999866511 0 0 1111223333333333222222223345556678899999999
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++.+.+..-.++ .....+.++.+++.|+.+...++-...-+++.+.+.++.+.+.+ ++.+.+
T Consensus 99 ~~~iri~~~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l----- 160 (263)
T cd07943 99 VDVVRVATHCTE-----------ADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYV----- 160 (263)
T ss_pred CCEEEEEechhh-----------HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 999876543331 23678899999999999888876555678899999999999998 776532
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.| ....+|+++.+++...|..++. +.+...-|| ++ .-....++.+||+.+ +. |+ .+.+...
T Consensus 161 -~DT----~G~~~P~~v~~lv~~l~~~~~~--~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~---~aGN~~~ 230 (263)
T cd07943 161 -TDS----AGAMLPDDVRERVRALREALDP--TPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA---GAGNTPL 230 (263)
T ss_pred -cCC----CCCcCHHHHHHHHHHHHHhCCC--ceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC---CcCCccH
Confidence 333 2356788999999999988775 233221232 22 234456889999988 11 22 1334456
Q ss_pred hHHHHHHHHcCCCc
Q psy8190 321 NDDSKLLKKLGINT 334 (348)
Q Consensus 321 ~~~~~~i~~~G~~p 334 (348)
++....++..|+.+
T Consensus 231 E~lv~~L~~~g~~~ 244 (263)
T cd07943 231 EVLVAVLERMGIET 244 (263)
T ss_pred HHHHHHHHhcCCCC
Confidence 78888888888864
No 162
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=98.23 E-value=0.00061 Score=61.66 Aligned_cols=213 Identities=14% Similarity=0.136 Sum_probs=143.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++- |...+.+ .+.++.+.+. +..+. .......+.++...++|++.+.+
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~----p~~~~~~--~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGI----PAMGEEE--REAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec----CCCCHHH--HHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCEEEE
Confidence 37899999999999999999987742 2111111 2445555543 33332 22335678889999999999998
Q ss_pred cCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 175 NLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++. ..+.++.. ...+...++++.+++.|+.++.+.+.+...+++.+.+.++.+.+.+ ++.+.+ +.
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l------~D 160 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG--ADRLRF------AD 160 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--CCEEEe------CC
Confidence 8766643 34455432 2456667899999999999888877766678999999999999887 666432 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
| ....+|+++.+++...|..+| . ++...-|| +..-....++.+||+.+ +. |+ .+.+.+.++.
T Consensus 161 T----~G~~~P~~v~~lv~~l~~~~~-~--~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~---~aGN~~tE~l 230 (259)
T cd07939 161 T----VGILDPFTTYELIRRLRAATD-L--PLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE---RAGNAALEEV 230 (259)
T ss_pred C----CCCCCHHHHHHHHHHHHHhcC-C--eEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc---cccCcCHHHH
Confidence 3 235677889999998888776 2 22221232 22334566899999987 22 22 2334456788
Q ss_pred HHHHHHc-CCCc
Q psy8190 324 SKLLKKL-GINT 334 (348)
Q Consensus 324 ~~~i~~~-G~~p 334 (348)
..+++.. |+..
T Consensus 231 v~~l~~~~g~~~ 242 (259)
T cd07939 231 VMALKHLYGRDT 242 (259)
T ss_pred HHHHHHhcCCCC
Confidence 8888887 8873
No 163
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=98.18 E-value=0.0014 Score=59.52 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=138.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC-------CcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHHHHHHHHhCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL-------KDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-------~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
++.++..+.++.+.+.|+..|-++-..... ...+.+.+..+.+..+ ...+...+.++..+.+.++...+.|+
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCc
Confidence 789999999999999999998665210000 0113455555555443 23344445566667888999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+.+.+.. +....+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.+ ++.+.+
T Consensus 97 ~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g--~~~i~l------ 157 (266)
T cd07944 97 DMIRVAF-----------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK--PDVFYI------ 157 (266)
T ss_pred CEEEEec-----------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC--CCEEEE------
Confidence 9887654 224788999999999999999999988888888999999999999887 776532
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy8190 250 KGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.| ....+|+++.+++...|..++. ..+.+- -|+ +..-....++.+||+.+ +. |+ .+.+.+.
T Consensus 158 ~DT----~G~~~P~~v~~lv~~l~~~~~~~~~i~~H--~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~---~aGN~~~ 228 (266)
T cd07944 158 VDS----FGSMYPEDIKRIISLLRSNLDKDIKLGFH--AHNNLQLALANTLEAIELGVEIIDATVYGMGR---GAGNLPT 228 (266)
T ss_pred ecC----CCCCCHHHHHHHHHHHHHhcCCCceEEEE--eCCCccHHHHHHHHHHHcCCCEEEEecccCCC---CcCcHHH
Confidence 223 2356888999999999988774 333221 122 22334566899999887 11 11 1223334
Q ss_pred hHHHHHHHHc
Q psy8190 321 NDDSKLLKKL 330 (348)
Q Consensus 321 ~~~~~~i~~~ 330 (348)
++....++..
T Consensus 229 E~~v~~l~~~ 238 (266)
T cd07944 229 ELLLDYLNNK 238 (266)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 164
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=98.18 E-value=0.00079 Score=61.37 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=142.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC----cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELK----DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~----~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.++.++-++.++.+.+.|++.|-++.. .+|. ..+.+ ++++.+.. .+..+.+-. ...+.++...++|++.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~-~~~~~~p~~~d~~---~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSF-VSPKWVPQMADAE---EVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDE 89 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCC-CCcccccccCCHH---HHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCE
Confidence 378999999999999999999988643 1221 12333 34444443 244443322 4677899999999999
Q ss_pred eeccCCCCHHH-HhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecC-----C-CHHHHHHHHHHHHhcCCCCCeee
Q psy8190 172 YNHNLDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS-----E-SRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 172 i~~g~et~~e~-l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glg-----e-t~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.+.+-+++.+ ...+++. ...+...+.++.+++.|+.+..++++-++ . +.+.+.+.++.+.+++ ++.|.
T Consensus 90 i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~ 167 (274)
T cd07938 90 VAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLG--CDEIS 167 (274)
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 99887776543 3345443 35677788899999999988777665442 2 5677888888888887 66543
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---eeC---Ceec
Q psy8190 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYG---DKLL 313 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~---~~~~ 313 (348)
+ +.| ....+|.++.+++...|..+|+..+.+- -|| +..-....++.+||+.+ +.| .-+.
T Consensus 168 l------~DT----~G~~~P~~v~~lv~~l~~~~~~~~i~~H--~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa 235 (274)
T cd07938 168 L------GDT----IGVATPAQVRRLLEAVLERFPDEKLALH--FHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFA 235 (274)
T ss_pred E------CCC----CCccCHHHHHHHHHHHHHHCCCCeEEEE--ECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCC
Confidence 2 223 2346788999999999888886433321 122 22334566899999988 221 1110
Q ss_pred --cCCCCCchHHHHHHHHcCCCc
Q psy8190 314 --TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 --~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.+...++...+++..|+.+
T Consensus 236 ~eraGN~~~E~lv~~L~~~g~~t 258 (274)
T cd07938 236 PGATGNVATEDLVYMLEGMGIET 258 (274)
T ss_pred CCccCCcCHHHHHHHHHhcCCCC
Confidence 122344578888899988874
No 165
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.16 E-value=5.8e-05 Score=70.68 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=138.0
Q ss_pred CCCCCC---CCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCC-----EEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy8190 73 GGCTED---CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGAT-----RFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 73 ~~C~~~---C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~-----~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
..|... |.||....... .. ...++..+.++... +.|+. .+...+++ .++ ...++.+..+..+.
T Consensus 35 ~~c~~~~~~C~~cy~~v~~~---~~-~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~-d~~--c~p~le~~~~r~~~ 105 (414)
T COG1625 35 KDCIPYRFGCDDCYLSVNEL---DT-GFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNG-DTF--CYPDLEPRGRRARL 105 (414)
T ss_pred CcCCCccccccceeeEEecc---cC-CCCCHhHhhccccc--ccccccccccceeecCCC-Ccc--cCcchhhhhhHHHh
Confidence 445555 88888665311 11 23566666665432 22322 23333332 222 33466777777766
Q ss_pred cC----cEEEEe--cCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 145 IG----LETCLT--LGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 145 ~~----~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
.+ +.+.-. .+....+..+.+.++|++-+++++.| .+++.+++-+.+..++.++.+++..+.++.+.+.+++=.
T Consensus 106 ~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl~P 185 (414)
T COG1625 106 YYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVLCP 185 (414)
T ss_pred hcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEEcC
Confidence 42 333322 34556677888999999999999999 799999998899999999999999999999988877766
Q ss_pred CCC-HHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCc-eec
Q psy8190 218 SES-RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG--SSILDPLEFIRTIAVARITMPTSR-IRM 283 (348)
Q Consensus 218 get-~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~--~~~~~~~~~~~~~a~~R~~lp~~~-i~~ 283 (348)
|-+ -+++.++++.|.+++ +..+.++.+.|..-|.+.. .++++++++..+-.+.|.+..... +++
T Consensus 186 GvNdge~L~kT~~dL~~~g--~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V 253 (414)
T COG1625 186 GVNDGEELEKTLEDLEEWG--AHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRV 253 (414)
T ss_pred CcCcHHHHHHHHHHHHHhC--cCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Confidence 666 799999999999998 7888877777876665543 256777888777777777654433 544
No 166
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=98.14 E-value=0.0013 Score=60.30 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=142.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELK-DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~-~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-+++. .+|. ......-.+.++.+.+ .+..+..-. ...+.++...++|++.+.+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf-~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASF-VSPKWVPQMADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCC-cCcccccccccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEEEE
Confidence 378999999999999999999877532 1221 0111112455555543 234443222 3678889999999999998
Q ss_pred cCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeec---CC---CHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 175 NLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGL---SE---SRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Gl---ge---t~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
.+-+++.+. +++++. ...+...++++.+++.|+.+..++.+.+ .+ +++.+.+..+.+.+.+ ++.|.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l-- 174 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG--CYEISL-- 174 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC--CcEEEe--
Confidence 877765433 344432 2445577889999999998877666544 22 6788888899999988 776442
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CC-eecc--
Q psy8190 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GD-KLLT-- 314 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~-~~~~-- 314 (348)
+.|- ...+|.++.+++...|..+|+..+.+- -|| +..-....++.+||+.+ +. |+ -+..
T Consensus 175 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H--~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~ 244 (287)
T PRK05692 175 ----GDTI----GVGTPGQVRAVLEAVLAEFPAERLAGH--FHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGA 244 (287)
T ss_pred ----cccc----CccCHHHHHHHHHHHHHhCCCCeEEEE--ecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCc
Confidence 2332 345788899999998888876433321 122 22334566899999998 22 22 1101
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy8190 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+..
T Consensus 245 aGN~~~E~lv~~L~~~g~~t 264 (287)
T PRK05692 245 SGNVATEDVLYMLHGLGIET 264 (287)
T ss_pred cccccHHHHHHHHHhcCCCC
Confidence 22334578899999999874
No 167
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=98.13 E-value=0.0014 Score=59.53 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=141.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhC----CCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVG----LDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG----~~~ 171 (348)
++.++.+..++.+.+.|+..|-++.... +..+. +.++.+.+. +..+.+-. ....+.++...++| ++.
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~--~~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAA--SPGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCC--CHHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCCCCE
Confidence 7899999999999999999987754311 11222 455555542 34433221 23466788888888 998
Q ss_pred eeccCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 172 YNHNLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 172 i~~g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.+..-.++. ....++.+ ...+...++++.+++.|+.++.+.+.+...+++.+.+.++.+.+++ ++.+.+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l----- 162 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG--ATTINI----- 162 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 8887655543 34445543 3467788899999999999888777776678899999999999998 776532
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---eeCCeeccCCCCCchH
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FYGDKLLTTDNTKTND 322 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~~~ 322 (348)
+.| ....+|+++.+++...|..+|+..+.+...-|+ ++ .-....++.+||+-+ +.|-- -.+.+...++
T Consensus 163 -~DT----~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~aGN~~tE~ 236 (268)
T cd07940 163 -PDT----VGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAALEE 236 (268)
T ss_pred -CCC----CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-cccccccHHH
Confidence 223 234678899999999999888622333321232 22 234466889999988 22210 0123344578
Q ss_pred HHHHHHHcC
Q psy8190 323 DSKLLKKLG 331 (348)
Q Consensus 323 ~~~~i~~~G 331 (348)
+...++..|
T Consensus 237 lv~~L~~~~ 245 (268)
T cd07940 237 VVMALKTRY 245 (268)
T ss_pred HHHHHHhcc
Confidence 888888886
No 168
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.12 E-value=5.1e-06 Score=65.79 Aligned_cols=83 Identities=20% Similarity=0.396 Sum_probs=46.2
Q ss_pred cCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCC--CEEEEeccCCCCCcccHHHHHHHHHHHHhcC--c
Q psy8190 72 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA--TRFCMGAAWRELKDRDLDNIENMICEVKKIG--L 147 (348)
Q Consensus 72 t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~ 147 (348)
|.+|+.+|.||.....+... .....+.+++.+.++.+...+. ..|.|+|| ++.-..+.+.+.++++.+++.+ .
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GG-EPll~~~~~~l~~~i~~~~~~~~~~ 81 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPK--KGEEMSIEELEEIIDELKEKGFRPSTVVFTGG-EPLLYLNPEDLIELIEYLKERGPEI 81 (119)
T ss_dssp -S--S---TTTS-TTTSST---GGGS--HHHHHHHHHHHHHTT----EEEEESS-SGGGSTTHHHHHHHHCTSTT-----
T ss_pred cCCcCCCCccCCcCccCCCc--cCCcccHhHHHHHHHHHHhcCCceEEEEEECC-CCccccCHHHHHHHHHHHHhhCCCc
Confidence 79999999999975533222 2234688888888887777665 56899987 4221245678999999998876 6
Q ss_pred EEEEe-cCCCC
Q psy8190 148 ETCLT-LGMLN 157 (348)
Q Consensus 148 ~i~~~-~g~l~ 157 (348)
.+.+. .|.+.
T Consensus 82 ~i~i~TNg~~~ 92 (119)
T PF13394_consen 82 KIRIETNGTLP 92 (119)
T ss_dssp EEEEEE-STTH
T ss_pred eEEEEeCCeec
Confidence 66654 35544
No 169
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=98.07 E-value=0.0026 Score=59.62 Aligned_cols=221 Identities=13% Similarity=0.114 Sum_probs=139.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++-++.++.+.+.|++.|-.+... +|.. .....-.+.++.++. .+..+.+- ....+.++...++|++.+.+
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l--~~n~~die~A~~~g~~~v~i 140 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVL--TPNLKGFEAAIAAGAKEVAV 140 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEE--cCCHHHHHHHHHcCcCEEEE
Confidence 3789999999999999999998765431 2210 111122334444443 23333211 23888999999999999999
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe--eec-CC---CHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGI--IGL-SE---SRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i--~Gl-ge---t~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
.+-+++...+ ++++. ...+...+.++.+++.|+.+..++. +|. .+ +++.+.+.++.+.+.+ .+.|.+
T Consensus 141 ~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G--ad~I~l-- 216 (347)
T PLN02746 141 FASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG--CYEISL-- 216 (347)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC--CCEEEe--
Confidence 8866765444 33332 2455556799999999998876654 453 22 5677888888888887 666542
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CC-eecc--
Q psy8190 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GD-KLLT-- 314 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~-~~~~-- 314 (348)
..| ....+|.++.+++...|..+|...|.+-. |+ +..-....++.+||+.+ +. |+ -+..
T Consensus 217 ----~DT----~G~a~P~~v~~lv~~l~~~~~~~~i~~H~--Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~gr 286 (347)
T PLN02746 217 ----GDT----IGVGTPGTVVPMLEAVMAVVPVDKLAVHF--HDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGA 286 (347)
T ss_pred ----cCC----cCCcCHHHHHHHHHHHHHhCCCCeEEEEE--CCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCC
Confidence 233 23456788888888888877753333211 22 22334566899999998 22 22 1111
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy8190 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+...+++..+++..|+..
T Consensus 287 aGN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 287 SGNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 12334578888999998873
No 170
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=98.04 E-value=0.0017 Score=59.22 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=136.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCC------CCCcccHHHHHHHHHHHHhcCcEEEEe----------cCCCCHHH
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----------LGMLNENQ 160 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~------~~~~~~~~~~~~l~~~i~~~~~~i~~~----------~g~l~~e~ 160 (348)
.++.++.++.+..+.+.|+..|-++++.. .....+.+.+.++.+.+....+...+. |....++.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHH
Confidence 37899999999999999999987765421 012223344444443333222221111 12346788
Q ss_pred HHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCC
Q psy8190 161 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 161 l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~ 238 (348)
++...++|++.+.+..-.+ ..+...++++.+++.|+.+...+.+ +...+++.+.+.++.+.+.+ +
T Consensus 97 i~~~~~~g~~~iri~~~~~-----------~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G--a 163 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALN-----------DVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG--A 163 (275)
T ss_pred HHHHHHcCCCEEEEeecCC-----------hHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC--C
Confidence 9999999999988755332 3678899999999999987766554 33567888999999999998 7
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCcceee---e--CC
Q psy8190 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSIF---Y--GD 310 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~~---~--~~ 310 (348)
+.+.+. .| ....+|.++.+++...|..++ +++...-|| ++ .-....++.+||+.+- . |+
T Consensus 164 ~~i~l~------DT----~G~~~P~~v~~lv~~l~~~~~---~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~ 230 (275)
T cd07937 164 DSICIK------DM----AGLLTPYAAYELVKALKKEVG---LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSG 230 (275)
T ss_pred CEEEEc------CC----CCCCCHHHHHHHHHHHHHhCC---CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 765432 23 245678899999999998776 232221232 22 3345668899999882 1 22
Q ss_pred eeccCCCCCchHHHHHHHHcCCCc
Q psy8190 311 KLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 311 ~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.+.+.++....++..|+..
T Consensus 231 ---~aGN~~~E~l~~~L~~~g~~~ 251 (275)
T cd07937 231 ---GTSQPSTESMVAALRGTGRDT 251 (275)
T ss_pred ---CcCChhHHHHHHHHHccCCCC
Confidence 123344578888888888874
No 171
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=98.03 E-value=0.0039 Score=56.42 Aligned_cols=210 Identities=16% Similarity=0.117 Sum_probs=139.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++.. .. .+...+.++.+...+ ..+ ......+.+.++...++|++.+.+
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P----~~--~~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSP----AA--SPQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECC----CC--CHHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCEEEE
Confidence 479999999999999999999987642 11 134455555554432 223 223356778899999999999998
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++...+ ..+++ ...+...+.++.+++.|+.++.++.-..+-+++.+.+.++.+.+++ ++.+.+ +.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l------~D 162 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG--VNRVGI------AD 162 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEE------CC
Confidence 8766654443 33322 2455677788999999999998887766777899999999999887 665432 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
| ....+|++..+++...|..++ ..+.+ .-|+ +.--....++.+||+.+ +. |+ .+.+.+.++.
T Consensus 163 t----~G~~~P~~v~~~~~~~~~~~~-~~i~~--H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe---raGn~~~e~~ 232 (262)
T cd07948 163 T----VGIATPRQVYELVRTLRGVVS-CDIEF--HGHNDTGCAIANAYAALEAGATHIDTTVLGIGE---RNGITPLGGL 232 (262)
T ss_pred c----CCCCCHHHHHHHHHHHHHhcC-CeEEE--EECCCCChHHHHHHHHHHhCCCEEEEecccccc---ccCCccHHHH
Confidence 3 235677888899988888776 33322 1122 22334566889999987 11 22 1223345677
Q ss_pred HHHHHHcC
Q psy8190 324 SKLLKKLG 331 (348)
Q Consensus 324 ~~~i~~~G 331 (348)
...++..+
T Consensus 233 ~~~l~~~~ 240 (262)
T cd07948 233 IARMYTAD 240 (262)
T ss_pred HHHHHhcc
Confidence 77776553
No 172
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=98.01 E-value=0.0013 Score=62.46 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=140.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++. |... +.-.+.++.+.+.+ ..+.. ......+.++...++|++.+.+
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~----p~~~--~~~~e~i~~i~~~~~~~~v~~-~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF----PIAS--EGEFEAIKKISQEGLNAEICS-LARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC--hHHHHHHHHHHhcCCCcEEEE-EcccCHHHHHHHHHcCcCEEEE
Confidence 37899999999999999999987642 2111 12235566665543 33332 2245678899999999999998
Q ss_pred cCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 175 NLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++... ..++++ ...+...++++.+++.|+.+..++.-+...+++.+.+.++.+.+.+ ++.+.+ +.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l------~D 162 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG--ADRINI------AD 162 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC--CCEEEE------eC
Confidence 887765443 344433 2567778899999999999887766555567888999999998888 666443 22
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---eeCCeeccCCCCCchHHHH
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FYGDKLLTTDNTKTNDDSK 325 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~~~~~~~~~g~~~~~~~~ 325 (348)
|- ...+|.++.+++...|..++ +++...-|| ++ .-....++.+||+.+ +.|-- -.+.+.+.++...
T Consensus 163 T~----G~~~P~~v~~li~~l~~~~~---~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG-eraGN~~lE~vv~ 234 (363)
T TIGR02090 163 TV----GVLTPQKMEELIKKLKENVK---LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG-ERAGNAALEEVVM 234 (363)
T ss_pred CC----CccCHHHHHHHHHHHhcccC---ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc-cccccccHHHHHH
Confidence 32 34577888888888876665 333221232 22 234566899999887 22210 0123344567777
Q ss_pred HHHH-cCCCc
Q psy8190 326 LLKK-LGINT 334 (348)
Q Consensus 326 ~i~~-~G~~p 334 (348)
.++. .|+.+
T Consensus 235 ~L~~~~g~~~ 244 (363)
T TIGR02090 235 ALKYLYGVKT 244 (363)
T ss_pred HHHHhhCCCC
Confidence 7776 78764
No 173
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.00 E-value=8.9e-05 Score=61.59 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcE-E
Q psy8190 73 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-ATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLE-T 149 (348)
Q Consensus 73 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G-~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~-i 149 (348)
.+|+.+|.||..+..+..... ..++.+++.+.++.+.+.+ +..|.|+|| ++......+.+.++++.+++. +.. +
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g--~~~~~~~~~~i~~~l~~~~~~~gVt~sGG-EPllq~~~~~l~~ll~~~k~~~~~~~~ 99 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGG--KEFTEALEKEIIRDLNDNPLIDGLTLSGG-DPLYPRNVEELIELVKKIKAEFPEKDI 99 (154)
T ss_pred CCCCCCCcCCCcccccCCCCC--CcCCHHHHHHHHHHHHhcCCcCeEEEeCh-hhCCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 689999999997765432211 2467555555555555554 677999988 433223568999999999875 443 4
Q ss_pred EEecCCCCHHHH
Q psy8190 150 CLTLGMLNENQA 161 (348)
Q Consensus 150 ~~~~g~l~~e~l 161 (348)
....|....+.+
T Consensus 100 ~~~tG~~~~~~~ 111 (154)
T TIGR02491 100 WLWTGYTWEEIL 111 (154)
T ss_pred EEeeCccHHHHh
Confidence 446665555544
No 174
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.99 E-value=0.0028 Score=60.61 Aligned_cols=214 Identities=16% Similarity=0.192 Sum_probs=139.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++.++.++.++.+.+.|++.|-++. |...+ .-.+.++.+.+.+....+ .......+.++...++|++.+.+.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~----p~~~~--~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGF----PAVSE--DEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeC----CCcCh--HHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEE
Confidence 37899999999999999999987632 22111 123455555554333221 223345788999999999999998
Q ss_pred CCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 176 LDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 176 ~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
+-+++... ..++.. ...+...++++.+++.|+.+..+...+.-.+++.+.+.++.+.+.+ ++.|.+ +.|
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~I~l------~DT 167 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG--ADRVRF------CDT 167 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC--CCEEEE------ecc
Confidence 87765433 345432 2455666789999999999888877666677899999999999888 666432 234
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---eeC--CeeccCCCCCchHHH
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FYG--DKLLTTDNTKTNDDS 324 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~~--~~~~~~~g~~~~~~~ 324 (348)
- ...+|.++.+++...+..+ + +.+...-|| ++ .-....|+.+||+.+ +.| + .+.+...+++.
T Consensus 168 ~----G~~~P~~v~~lv~~l~~~~-~--~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe---raGNa~lE~vv 237 (378)
T PRK11858 168 V----GILDPFTMYELVKELVEAV-D--IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE---RAGNAALEEVV 237 (378)
T ss_pred C----CCCCHHHHHHHHHHHHHhc-C--CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc---cccCccHHHHH
Confidence 2 3467888888888887665 3 222211132 12 234566889999988 222 2 12334456777
Q ss_pred HHHH-HcCCCc
Q psy8190 325 KLLK-KLGINT 334 (348)
Q Consensus 325 ~~i~-~~G~~p 334 (348)
..++ ..|+..
T Consensus 238 ~~L~~~~g~~~ 248 (378)
T PRK11858 238 MALKYLYGIDL 248 (378)
T ss_pred HHHHHHhCCCC
Confidence 7776 577763
No 175
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.88 E-value=0.0036 Score=59.56 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=139.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.++.++.+.+.|++.|-++- |... +.-.+.++.+.+. +..+. .......+.++...++|++.+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~----p~~~--~~~~e~i~~i~~~~~~~~i~-~~~r~~~~di~~a~~~g~~~i~i 91 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGI----PAMG--EEERAVIRAIVALGLPARLM-AWCRARDADIEAAARCGVDAVHI 91 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC--HHHHHHHHHHHHcCCCcEEE-EEcCCCHHHHHHHHcCCcCEEEE
Confidence 37899999999999999999987742 2111 1223455555543 23332 33445688899999999999998
Q ss_pred cCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 175 NLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++... ..+++. ...+...++++.+++.|+.+..+...+.-.+++.+.+.++.+.+.+ ++.+. .+.
T Consensus 92 ~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------l~D 163 (365)
T TIGR02660 92 SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG--ADRFR------FAD 163 (365)
T ss_pred EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC--cCEEE------Ecc
Confidence 887665433 345433 2345566899999999998887766655567888899999998887 66543 233
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
|- ...+|.++.+++...+..++ +.++..-|| +..-....|+.+||+.+ +. |+ .+.+.+.+++
T Consensus 164 T~----G~~~P~~v~~lv~~l~~~~~---v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe---raGN~~lE~l 233 (365)
T TIGR02660 164 TV----GILDPFSTYELVRALRQAVD---LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE---RAGNAALEEV 233 (365)
T ss_pred cC----CCCCHHHHHHHHHHHHHhcC---CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc---ccccCCHHHH
Confidence 32 35678888888888876553 233321232 12234566899999988 22 22 2334445677
Q ss_pred HHHH-HHcCCCc
Q psy8190 324 SKLL-KKLGINT 334 (348)
Q Consensus 324 ~~~i-~~~G~~p 334 (348)
...+ ...|+.+
T Consensus 234 v~~L~~~~g~~~ 245 (365)
T TIGR02660 234 AMALKRLLGRDT 245 (365)
T ss_pred HHHHHHhcCCCC
Confidence 7777 6677764
No 176
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.75 E-value=0.018 Score=52.66 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=136.5
Q ss_pred ccCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----CcEEEEecCCCCHHHHHHHHHhCCCe
Q psy8190 97 ILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~-~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.++.++-++.++.+ .+.|++.|-++.. .-++.+.+.+.++.+.-... ++.+..-. .....++..+++|++.
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~--~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g~~~ 90 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASA--RVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAGAKV 90 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCC--CCCHHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCCCCE
Confidence 37899999999986 5669999877432 11222223444444322111 23333222 2345688999999999
Q ss_pred eeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEee-e--cCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 172 YNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGII-G--LSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 172 i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~-G--lget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+.+.+-+++... +.+++. ...+...+.++.+++.|+.+..++.- | .--+++.+.+.++.+.+++ ++.+.+
T Consensus 91 i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G--~~~i~l-- 166 (280)
T cd07945 91 LNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP--IKRIML-- 166 (280)
T ss_pred EEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC--CCEEEe--
Confidence 999887765433 445443 35677788899999999988777653 2 1236788888888898888 666432
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---eeCCeeccCCCCC
Q psy8190 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLTTDNTK 319 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~~~g~~ 319 (348)
+.| ....+|.+..+++...|..+|+..+.+- -|| +..-....++.+||+.+ +.|-- -.+.+..
T Consensus 167 ----~DT----~G~~~P~~v~~l~~~l~~~~~~~~i~~H--~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG-e~aGN~~ 235 (280)
T cd07945 167 ----PDT----LGILSPFETYTYISDMVKRYPNLHFDFH--AHNDYDLAVANVLAAVKAGIKGLHTTVNGLG-ERAGNAP 235 (280)
T ss_pred ----cCC----CCCCCHHHHHHHHHHHHhhCCCCeEEEE--eCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccCcc
Confidence 233 2346777888888888877776443322 122 22334566899999987 22110 0123344
Q ss_pred chHHHHHHH-HcCCCc
Q psy8190 320 TNDDSKLLK-KLGINT 334 (348)
Q Consensus 320 ~~~~~~~i~-~~G~~p 334 (348)
.++...+++ ..|+..
T Consensus 236 ~E~~v~~L~~~~g~~t 251 (280)
T cd07945 236 LASVIAVLKDKLKVKT 251 (280)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 577788884 578863
No 177
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=97.75 E-value=0.011 Score=54.02 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=135.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---CcEEEE-----ecC--CCCHHHHHHHHH
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCL-----TLG--MLNENQAYRLKK 166 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~-----~~g--~l~~e~l~~Lk~ 166 (348)
.++.++.++.++.+.+.|++.|-++.+..+ ..+ .+.++.+.+. +..+.. ..+ ..++..++.+.+
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~ 89 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSN--PKD----TEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLE 89 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCC--HHH----HHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHh
Confidence 378999999999999999999987543211 222 3333444332 223222 122 223457888999
Q ss_pred hCCCeeeccCCCCHH-HHhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe---eecCCCHHHHHHHHHHHHhcCCCCCe
Q psy8190 167 VGLDYYNHNLDTSPK-LYGDIIST--RDYENRLNTLKNVRNVGINICCGGI---IGLSESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 167 aG~~~i~~g~et~~e-~l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i---~Glget~e~~~~~l~~l~~l~~~~~~ 240 (348)
+|++.+.+.+-+++- ..+.+++. ...+...+.++.+++.|+.++.+.+ -|...+++.+.+.++.+.+.+ ++.
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g--~~~ 167 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--ADW 167 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC--CCE
Confidence 999998887666543 33444433 4677888899999999998876533 122346777788888888887 665
Q ss_pred eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCee
Q psy8190 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKL 312 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~ 312 (348)
+. .+.| ....+|+++.+++...|..+|+..+.+- -|+ +..-....++.+||+.+ +. |+
T Consensus 168 i~------l~DT----~G~~~P~~v~~lv~~l~~~~~~~~l~~H--~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe-- 233 (273)
T cd07941 168 LV------LCDT----NGGTLPHEIAEIVKEVRERLPGVPLGIH--AHNDSGLAVANSLAAVEAGATQVQGTINGYGE-- 233 (273)
T ss_pred EE------EecC----CCCCCHHHHHHHHHHHHHhCCCCeeEEE--ecCCCCcHHHHHHHHHHcCCCEEEEecccccc--
Confidence 43 2333 2356788999999999988887433321 132 22334566899999988 22 22
Q ss_pred ccCCCCCchHHHHHHH-HcCCC
Q psy8190 313 LTTDNTKTNDDSKLLK-KLGIN 333 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~-~~G~~ 333 (348)
.+.+.+.++....++ ..|+.
T Consensus 234 -raGn~~~e~~~~~L~~~~~~~ 254 (273)
T cd07941 234 -RCGNANLCSIIPNLQLKMGYE 254 (273)
T ss_pred -ccccccHHHHHHHHHhccCCC
Confidence 123344566766665 56764
No 178
>PRK00915 2-isopropylmalate synthase; Validated
Probab=97.69 E-value=0.0078 Score=59.83 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=132.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHH----HHHhCCCee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYR----LKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~----Lk~aG~~~i 172 (348)
.++.++-++.++.+.+.|++.|-++... .+..+.+.+..+.+.. .+..+++-.. ...+.++. ++++|.+++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~--~s~~d~~~v~~i~~~~--~~~~i~a~~r-~~~~did~a~~a~~~~~~~~v 96 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPA--SSPGDFEAVKRIARTV--KNSTVCGLAR-AVKKDIDAAAEALKPAEAPRI 96 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCC--CChHHHHHHHHHHhhC--CCCEEEEEcc-CCHHHHHHHHHHhhcCCCCEE
Confidence 3799999999999999999998774321 1223344443333222 2344443221 22333444 447899999
Q ss_pred eccCCCCHHH-HhccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 173 NHNLDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~-l~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+.+-+++-. ...++.. ...+...++++.+++.|+.+..+...+.--+++.+.+.++.+.+.+ ++.+. .
T Consensus 97 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~G--a~~i~------l 168 (513)
T PRK00915 97 HTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAG--ATTIN------I 168 (513)
T ss_pred EEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcC--CCEEE------E
Confidence 9888776443 3344432 2445566889999999999877766665556788888888888887 66543 2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCc
Q psy8190 250 KGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKT 320 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~ 320 (348)
+.|- ...+|.++.+++...+..+|+ ..+.++..-|| +..-....|+.+||+.+ +. |+ .+.+...
T Consensus 169 ~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGE---RaGNa~l 241 (513)
T PRK00915 169 PDTV----GYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE---RAGNAAL 241 (513)
T ss_pred ccCC----CCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccc---cccCccH
Confidence 3442 345788999999998888875 22344322232 11234566899999988 22 22 1233444
Q ss_pred hHHHHHHHHc
Q psy8190 321 NDDSKLLKKL 330 (348)
Q Consensus 321 ~~~~~~i~~~ 330 (348)
++....++..
T Consensus 242 E~vv~~L~~~ 251 (513)
T PRK00915 242 EEVVMALKTR 251 (513)
T ss_pred HHHHHHHHhh
Confidence 6666666543
No 179
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=97.68 E-value=0.00067 Score=56.32 Aligned_cols=88 Identities=14% Similarity=0.244 Sum_probs=52.3
Q ss_pred EEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCC--CEEEEeccCCCCCcccHHHHHHHHHHHHh
Q psy8190 67 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA--TRFCMGAAWRELKDRDLDNIENMICEVKK 144 (348)
Q Consensus 67 ~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~i~~ 144 (348)
.+.+ .+|+.+|.||..+..+...... ..+.+.+.+.++.+...+. ..|.|+|| ++......+.+.++++.+++
T Consensus 20 ~if~--~GCnl~C~~C~n~~~~~~~~g~--~~~~~~~~~il~~~~~~~~~~~gvt~sGG-EPl~~~~~~~l~~l~~~~k~ 94 (154)
T PRK11121 20 TLFV--SGCVHQCPGCYNKSTWRLNSGH--PFTKEMEDQIIADLNDTRIKRQGLSLSGG-DPLHPQNVPDILKLVQRVKA 94 (154)
T ss_pred EEEc--CCCCCcCcCCCChhhccCCCCc--ccCHHHHHHHHHHHHHhCCCCCcEEEECC-CccchhhHHHHHHHHHHHHH
Confidence 3444 8999999999876644221111 2343333333344434443 57889888 43322356788889998886
Q ss_pred c--CcEEEEecCCCCHH
Q psy8190 145 I--GLETCLTLGMLNEN 159 (348)
Q Consensus 145 ~--~~~i~~~~g~l~~e 159 (348)
. +..+.+..|-.-+|
T Consensus 95 ~~~~~~i~~~tGy~~ee 111 (154)
T PRK11121 95 ECPGKDIWVWTGYKLDE 111 (154)
T ss_pred HCCCCCEEEecCCCHHH
Confidence 3 45666667755444
No 180
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.66 E-value=0.014 Score=57.25 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=136.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----cC------CCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----~g------~l~~e~l 161 (348)
++.++.+..++.+.+.|+..+-..||.+.+ ...+++++..+-+.+....+...+. +| .+-+..+
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv 103 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFV 103 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHH
Confidence 789999999999999999999777663322 1224444544444444333333221 22 2335678
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-. ...+....+++.++++|..+...+.| +.-.|.+.+++.++.+.+.+ .+
T Consensus 104 ~~a~~~Gidi~RIfd~l-----------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G--ad 170 (499)
T PRK12330 104 EKSAENGMDVFRVFDAL-----------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG--AD 170 (499)
T ss_pred HHHHHcCCCEEEEEecC-----------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC--CC
Confidence 88888999987654322 23367778899999999876555544 55779999999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccc---cchhhHHHHHHhCccee---eeCCee
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKL 312 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~ 312 (348)
.|.+ +.| ....+|.+..+++...|..+| +..|.+-. |+ +..-....|+.+||+.+ +.|- -
T Consensus 171 ~I~I------kDt----aGll~P~~~~~LV~~Lk~~~~~~ipI~~H~--Hnt~GlA~An~laAieAGad~vDtai~Gl-g 237 (499)
T PRK12330 171 SICI------KDM----AALLKPQPAYDIVKGIKEACGEDTRINLHC--HSTTGVTLVSLMKAIEAGVDVVDTAISSM-S 237 (499)
T ss_pred EEEe------CCC----ccCCCHHHHHHHHHHHHHhCCCCCeEEEEe--CCCCCcHHHHHHHHHHcCCCEEEeecccc-c
Confidence 6543 222 245678899999999998886 43333211 21 22233455899999998 2221 0
Q ss_pred ccCCCCCchHHHHHHHHcCCCc
Q psy8190 313 LTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~~~G~~p 334 (348)
..+..+..+++..+++..|+..
T Consensus 238 ~~aGn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 238 LGPGHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred ccccchhHHHHHHHHHhcCCCC
Confidence 0122334578889999999863
No 181
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.64 E-value=0.019 Score=56.03 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=131.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEE--e----cC------CCCHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCL--T----LG------MLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~--~----~g------~l~~e 159 (348)
++.++.+..++.+.+.|+..|-+.||-+. ....+.+.+..+.+.+. +..+.. . .| .+-+.
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK--NTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC--CCEEEEEeccccccCcccccchhhHH
Confidence 78999999999999999999977655221 11122333333322222 333322 1 12 22334
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCC
Q psy8190 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~ 237 (348)
.++...++|++.+.+..-.++ .+....+++.+++.|..+...+-|.. ..+.+.+++..+.+.+.+
T Consensus 100 fv~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-- 166 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-- 166 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--
Confidence 578888999998887654443 35677889999999998775554433 568888999999999888
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec
Q psy8190 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL 313 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~ 313 (348)
.+.|.+ +.| ....+|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+-.... +.
T Consensus 167 ad~I~i------~Dt----~G~l~P~~v~~Lv~~lk~~~~-vpI~~H--~Hnt~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 167 VDSICI------KDM----AGLLTPKRAYELVKALKKKFG-VPVEVH--SHCTTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred CCEEEE------CCc----cCCcCHHHHHHHHHHHHHhcC-CceEEE--ecCCCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 666542 222 234678888999998887765 223221 121 2233445589999999821110 11
Q ss_pred -cCCCCCchHHHHHHHHcCCCc
Q psy8190 314 -TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 -~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.++..+++..+++..|+..
T Consensus 234 ~gagN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 234 MGTSQPPFESMYYAFRENGKET 255 (467)
T ss_pred CCCCChhHHHHHHHHHhcCCCC
Confidence 122344578889999999874
No 182
>PRK09389 (R)-citramalate synthase; Provisional
Probab=97.63 E-value=0.015 Score=57.38 Aligned_cols=213 Identities=16% Similarity=0.124 Sum_probs=135.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++-++.++.+.+.|++.|-++.. ..+..+. +.++.+.+. ...+..-. ....+.++...++|++.+.+
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p--~~~~~d~----e~v~~i~~~~~~~~i~a~~-r~~~~di~~a~~~g~~~v~i 92 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSA--ITSEGER----EAIKAVTDEGLNAEICSFA-RAVKVDIDAALECDVDSVHL 92 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC--cCCHHHH----HHHHHHHhcCCCcEEEeec-ccCHHHHHHHHhCCcCEEEE
Confidence 379999999999999999999877432 1122233 444555443 33443222 23467799999999999999
Q ss_pred cCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 175 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 175 g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.+-+++...+ .++.. ...+...++++.+++.|+.+..+..-+.-.+++.+.+.++.+.+.+ ++.+.+ +.
T Consensus 93 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~l------~D 164 (488)
T PRK09389 93 VVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG--ADRICF------CD 164 (488)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC--CCEEEE------ec
Confidence 8877755433 34432 3556777888899999998877766554556788888888888887 676432 34
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCCchHH
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTKTNDD 323 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~~~~~ 323 (348)
|- ...+|.++.+++...|...+ +.++..-|| +..-....|+.+||+.+ +. |+ .+.+...+++
T Consensus 165 Tv----G~~~P~~~~~lv~~l~~~~~---v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE---RaGNa~lE~l 234 (488)
T PRK09389 165 TV----GILTPEKTYELFKRLSELVK---GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE---RAGNASLEEV 234 (488)
T ss_pred CC----CCcCHHHHHHHHHHHHhhcC---CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc---cccCccHHHH
Confidence 42 34567788888777765443 233321232 11234566899999988 22 22 2334445677
Q ss_pred HHHHHHc-CCCc
Q psy8190 324 SKLLKKL-GINT 334 (348)
Q Consensus 324 ~~~i~~~-G~~p 334 (348)
...++.. |..+
T Consensus 235 v~~L~~~~g~~~ 246 (488)
T PRK09389 235 VMALKHLYDVET 246 (488)
T ss_pred HHHHHhhcCCCC
Confidence 7777663 6653
No 183
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00032 Score=61.36 Aligned_cols=87 Identities=13% Similarity=0.235 Sum_probs=59.0
Q ss_pred EEeecCCCCCCCCcCCCCCCCCCC-CccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC
Q psy8190 68 LSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 146 (348)
Q Consensus 68 i~i~t~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~ 146 (348)
+.+...||+.+|.+|.....+... ...+...+.++|++.++... .+...|.|+|| + | .-...+.++++.+++.|
T Consensus 25 vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGG-E-P--~~~~~l~~Ll~~l~~~g 99 (212)
T COG0602 25 VFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGG-E-P--LLQPNLLELLELLKRLG 99 (212)
T ss_pred EEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCC-c-C--CCcccHHHHHHHHHhCC
Confidence 334357999999999966433221 13455688999998876542 24558999998 3 3 23356888899999888
Q ss_pred cEEEEec-CCCCHH
Q psy8190 147 LETCLTL-GMLNEN 159 (348)
Q Consensus 147 ~~i~~~~-g~l~~e 159 (348)
+.+.+.. |++...
T Consensus 100 ~~~~lETngti~~~ 113 (212)
T COG0602 100 FRIALETNGTIPVW 113 (212)
T ss_pred ceEEecCCCCcccc
Confidence 8887754 555443
No 184
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.55 E-value=0.033 Score=49.08 Aligned_cols=183 Identities=8% Similarity=-0.044 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC-CHHHHHHHHHhCCCeeec
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKIGLETCLTLGML-NENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~ 174 (348)
.+.-.+.++++.+.+.|++.+++- +|-+-|. ...=..+++.+++ .+.+.++.-.. +...++.+.++|.+.+++
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---itfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~ 97 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---FTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACVAAGADIVTL 97 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---cccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 345677788888888999998763 3312121 1111233344433 33344444433 445789999999999999
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-.|+. ....++++.+++.|..+.+++.+..+...+.+...+.. +|.+-++...| |.
T Consensus 98 H~Ea~-------------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P--Gf-- 153 (228)
T PRK08091 98 QVEQT-------------HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP--RT-- 153 (228)
T ss_pred cccCc-------------ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC--CC--
Confidence 88863 12446788899999977888888776666665444332 56777777665 32
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..+.. - ...++-+..+|.+.+. ..|.+-+| +..+.......+|||.++.|..+.
T Consensus 154 gGQ~f-~-~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 154 GTKAP-S-DLILDRVIQVENRLGNRRVEKLISIDGS---MTLELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred CCccc-c-HHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChhhh
Confidence 22221 1 2344445555555443 22555443 223444567889999998887553
No 185
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.54 E-value=0.028 Score=54.75 Aligned_cols=209 Identities=16% Similarity=0.127 Sum_probs=131.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEE--Ee----------cCCCCHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETC--LT----------LGMLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~--~~----------~g~l~~e 159 (348)
++.++.+..++.+.+.|+..|=+.||.+.+ ...+.+.+..+.+.+. +..+. +. +..+.++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--CCEEEEEeccccccccccCchhhHHH
Confidence 789999999999999999999877663221 1123333333333222 33332 21 2234567
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCC
Q psy8190 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~ 237 (348)
.++...++|++.+.+..-.++- ....++++.+++.|+.+...+-+-. -.+.+.+.+.++.+.+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~-----------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-- 167 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDV-----------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-- 167 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcH-----------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--
Confidence 8889999999998876543321 2466689999999987655544433 457888889999998888
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec
Q psy8190 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL 313 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~ 313 (348)
++.|.+ +.| ....+|....+++...|..++ ..|.+- .|+ +..-....|+.+||+.+-.... +.
T Consensus 168 ad~I~i------~Dt----~G~l~P~~v~~lv~alk~~~~-~pi~~H--~Hnt~GlA~AN~laAieaGad~vD~sv~glg 234 (448)
T PRK12331 168 ADSICI------KDM----AGILTPYVAYELVKRIKEAVT-VPLEVH--THATSGIAEMTYLKAIEAGADIIDTAISPFA 234 (448)
T ss_pred CCEEEE------cCC----CCCCCHHHHHHHHHHHHHhcC-CeEEEE--ecCCCCcHHHHHHHHHHcCCCEEEeeccccC
Confidence 776543 223 245678888889888887765 323221 121 2233455689999999822110 10
Q ss_pred -cCCCCCchHHHHHHHHcCCCc
Q psy8190 314 -TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 314 -~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.++..++...+++..|+..
T Consensus 235 ~gaGN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 235 GGTSQPATESMVAALQDLGYDT 256 (448)
T ss_pred CCcCCHhHHHHHHHHHhcCCCC
Confidence 122333578888898888873
No 186
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.51 E-value=0.024 Score=57.06 Aligned_cols=211 Identities=15% Similarity=0.088 Sum_probs=132.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHhc--CcEEEE--e----------cCCCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKKI--GLETCL--T----------LGMLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~~--~~~i~~--~----------~g~l~~e~l 161 (348)
++.++.+..++.+.+.|+..|=++||-+... +.--+.=.+.++.+++. +..+.. . +..+.++.+
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 7899999999999999999998876522211 00011123444444431 333321 1 223445678
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-.++ .+....+++.+++.|+.+...+-+-. ..|.+.+.+.++.+.+.+ .+
T Consensus 98 ~~a~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G--ad 164 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALND-----------PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG--VD 164 (582)
T ss_pred HHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--CC
Confidence 8899999998876543332 25678889999999998776654443 468899999999999998 66
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ +.| ....+|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+=.... +- .
T Consensus 165 ~I~i------~Dt----~G~~~P~~v~~lv~~lk~~~~-~pi~~H--~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~ 231 (582)
T TIGR01108 165 SICI------KDM----AGILTPKAAYELVSALKKRFG-LPVHLH--SHATTGMAEMALLKAIEAGADGIDTAISSMSGG 231 (582)
T ss_pred EEEE------CCC----CCCcCHHHHHHHHHHHHHhCC-CceEEE--ecCCCCcHHHHHHHHHHhCCCEEEecccccccc
Confidence 5432 233 234678888899988887775 222221 122 2233455689999999821100 00 2
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy8190 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.++..+++..+++..|+..
T Consensus 232 tGn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 232 TSHPPTETMVAALRGTGYDT 251 (582)
T ss_pred ccChhHHHHHHHHHhcCCCc
Confidence 33344578888888888874
No 187
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=97.50 E-value=0.021 Score=55.57 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=133.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC-C-----CCcccHHHHHHHHHHHHhcCcEEEEe----cC------CCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWR-E-----LKDRDLDNIENMICEVKKIGLETCLT----LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~-~-----~~~~~~~~~~~l~~~i~~~~~~i~~~----~g------~l~~e~l 161 (348)
++.++++..+..+.+.|+..+-+.||-+ + ....+++++..+-+.++...+..-+. .| .+-+..+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv 111 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFI 111 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHH
Confidence 6789999999999999999987766622 1 11234555555555554433332222 22 2333457
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...+.|++.+.+ +..+ ...+....+++.+++.|..+...+.|=. ..|.+-+++.++.+.+++ ++
T Consensus 112 ~~a~~~Gidi~Ri--------fd~l---nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G--ad 178 (468)
T PRK12581 112 SLSAQNGIDVFRI--------FDAL---NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG--AD 178 (468)
T ss_pred HHHHHCCCCEEEE--------cccC---CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC--CC
Confidence 8888899997753 3332 3677888999999999997655544422 668888899999898888 66
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ +.| ....+|.+..+++...|. .++..|.+- .|+ +..-....|+.+||+.+=.... +. .
T Consensus 179 ~I~I------kDt----aG~l~P~~v~~Lv~alk~-~~~~pi~~H--~Hnt~GlA~An~laAieAGad~vD~ai~g~g~g 245 (468)
T PRK12581 179 SICI------KDM----AGILTPKAAKELVSGIKA-MTNLPLIVH--THATSGISQMTYLAAVEAGADRIDTALSPFSEG 245 (468)
T ss_pred EEEE------CCC----CCCcCHHHHHHHHHHHHh-ccCCeEEEE--eCCCCccHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 6543 222 235677888888888876 344333221 121 2233455689999998821110 11 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy8190 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+++.+++..+++..|+..
T Consensus 246 agN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 246 TSQPATESMYLALKEAGYDI 265 (468)
T ss_pred cCChhHHHHHHHHHhcCCCC
Confidence 22344578888999999874
No 188
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.48 E-value=0.031 Score=56.42 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=133.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHhc--CcEEE--Ee----------cCCCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKKI--GLETC--LT----------LGMLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~~--~~~i~--~~----------~g~l~~e~l 161 (348)
++.++.+..+..+.+.|+..+-+.||-+... +.--+.-.+.++.+++. +..+. +. +..+-+..+
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 6789999999999999999997776522110 00112223444444432 23322 11 223456778
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-.+ ..+....+++.+++.|..+...+-|-. ..|.+.+++.++.+.+.+ .+
T Consensus 103 ~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G--ad 169 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN-----------DVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG--CD 169 (592)
T ss_pred HHHHHCCCCEEEEEEecC-----------hHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--CC
Confidence 899999999887654333 235778889999999998776665533 568899999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ ..| .....|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+=..-. +. .
T Consensus 170 ~I~i------~Dt----~G~~~P~~~~~lv~~lk~~~~-~pi~~H--~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~ 236 (592)
T PRK09282 170 SICI------KDM----AGLLTPYAAYELVKALKEEVD-LPVQLH--SHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFG 236 (592)
T ss_pred EEEE------CCc----CCCcCHHHHHHHHHHHHHhCC-CeEEEE--EcCCCCcHHHHHHHHHHhCCCEEEeeccccCCC
Confidence 6533 222 234678888899988888775 222221 122 2233455689999998821100 10 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy8190 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.++..+.+...++..|+.+
T Consensus 237 agn~~~e~vv~~L~~~g~~~ 256 (592)
T PRK09282 237 TSQPPTESMVAALKGTPYDT 256 (592)
T ss_pred cCCHhHHHHHHHHHhCCCCC
Confidence 22344577888888888874
No 189
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.37 E-value=0.075 Score=46.82 Aligned_cols=195 Identities=10% Similarity=0.087 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
+.-.+.++++.+.+.|++.+++- +|-+-|. .. .=.++++.+++. .+.+.++.-.- ....++.+.++|.+.++
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN-~t--fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPN-LT--IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCC-cc--cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 45677788888888899998763 3322221 11 112345555442 34444444433 34568899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+-.|+.+ ...++++.+|++|++. ++-+..+...+.+...+ +. +|.|-++...| |..
T Consensus 91 ~H~Ea~~-------------~~~~~l~~Ir~~g~k~--GlalnP~T~~~~i~~~l----~~---vD~VlvMtV~P--Gf~ 146 (223)
T PRK08745 91 FHPEASR-------------HVHRTIQLIKSHGCQA--GLVLNPATPVDILDWVL----PE---LDLVLVMSVNP--GFG 146 (223)
T ss_pred EcccCcc-------------cHHHHHHHHHHCCCce--eEEeCCCCCHHHHHHHH----hh---cCEEEEEEECC--CCC
Confidence 9888631 2346678888898765 44444444444443332 22 56777777665 422
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHH
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
.+.. - ...++-+..+|.+++. ..|.+.+| +..+.......+|||.++.|..+.. + ....+..+.+++
T Consensus 147 --GQ~f-i-~~~l~KI~~l~~~~~~~~~~~~IeVDGG---I~~eti~~l~~aGaDi~V~GSaiF~-~-~d~~~~~~~lr~ 217 (223)
T PRK08745 147 --GQAF-I-PSALDKLRAIRKKIDALGKPIRLEIDGG---VKADNIGAIAAAGADTFVAGSAIFN-A-PDYAQVIAQMRA 217 (223)
T ss_pred --Cccc-c-HHHHHHHHHHHHHHHhcCCCeeEEEECC---CCHHHHHHHHHcCCCEEEEChhhhC-C-CCHHHHHHHHHH
Confidence 2211 1 2334444444544432 33555554 2234455678899999998876532 2 224445555544
No 190
>PRK08005 epimerase; Validated
Probab=97.36 E-value=0.077 Score=46.27 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=108.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.++-.+.++++.+.+.|+..+++- +|-+-|. ...=.++++.+++ ..+.+.++.-.. ++..++.+.++|.+.+.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN---~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It 86 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINN---ITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIF 86 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---cccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 345677788888888999988763 3322121 1112244455544 233444444433 44578999999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+-.|+.+ ...++++.+|++|.+. ++-+..+...+.+...+. . +|.+-++...| |..
T Consensus 87 ~H~Ea~~-------------~~~~~l~~Ik~~G~k~--GlAlnP~Tp~~~i~~~l~----~---vD~VlvMsV~P--Gf~ 142 (210)
T PRK08005 87 IHAESVQ-------------NPSEILADIRAIGAKA--GLALNPATPLLPYRYLAL----Q---LDALMIMTSEP--DGR 142 (210)
T ss_pred EcccCcc-------------CHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHHHH----h---cCEEEEEEecC--CCc
Confidence 9888631 2335678888899875 444444444444433322 2 56777776654 432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.+. =....++-+..+|.+.+...|.+-+| +..+.......+|||.++.|..+.
T Consensus 143 --GQ~--f~~~~~~KI~~l~~~~~~~~I~VDGG---I~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 143 --GQQ--FIAAMCEKVSQSREHFPAAECWADGG---ITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred --cce--ecHHHHHHHHHHHHhcccCCEEEECC---CCHHHHHHHHHCCCCEEEEChHhh
Confidence 111 11345555566676666655766554 223444567889999998887553
No 191
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.26 E-value=0.07 Score=53.89 Aligned_cols=208 Identities=17% Similarity=0.135 Sum_probs=130.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----cC------CCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----~g------~l~~e~l 161 (348)
++.++.+..++.+.+.|+..+-+.||-+.+ ...+++++..+.+.+....+...+. .| .+-++.+
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 689999999999999999999776552211 1233444444444433322222222 11 2334568
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...++|++.+.+..-.+ ..+....+++.+++.|..+...+-| ....|.+.+.+.++.+.+.+ .+
T Consensus 104 ~~a~~~Gid~~rifd~ln-----------d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G--ad 170 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN-----------DPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG--VD 170 (593)
T ss_pred HHHHhcCCCEEEEeeeCC-----------cHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC--CC
Confidence 888999999887653212 2467788999999999975444443 33678888999999998887 66
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceee---e--CCe
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIF---Y--GDK 311 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~--~~~ 311 (348)
.+.+ ..| .....|.+..+++...|..++ ..|.+- .|+ +..-....|+.+||+.+- . |+
T Consensus 171 ~i~i------~Dt----~G~l~P~~~~~lv~~lk~~~~-~pi~~H--~Hnt~GlA~An~laAieAGa~~vD~ai~glG~- 236 (593)
T PRK14040 171 SLCI------KDM----AGLLKPYAAYELVSRIKKRVD-VPLHLH--CHATTGLSTATLLKAIEAGIDGVDTAISSMSM- 236 (593)
T ss_pred EEEE------CCC----CCCcCHHHHHHHHHHHHHhcC-CeEEEE--ECCCCchHHHHHHHHHHcCCCEEEeccccccc-
Confidence 5543 222 234678888888888887653 222221 122 222344558999999982 1 22
Q ss_pred eccCCCCCchHHHHHHHHcCCCc
Q psy8190 312 LLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 312 ~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
.+.++..+.+...++..|+..
T Consensus 237 --~~Gn~~le~vv~~L~~~~~~~ 257 (593)
T PRK14040 237 --TYGHSATETLVATLEGTERDT 257 (593)
T ss_pred --cccchhHHHHHHHHHhcCCCc
Confidence 123344577788888888763
No 192
>PRK14057 epimerase; Provisional
Probab=97.23 E-value=0.065 Score=47.94 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=113.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCC-cccHHHHHHHHHHHHhcCcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELK-DRDLDNIENMICEVKKIGLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~-~~~~~~~~~l~~~i~~~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.+.-.+.++++.+.+.|++.+++- +|-+-|. .... ++++.+++ .+.+.++.-.. .+..++.+.++|.+.+.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp----~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It 103 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGP----WAVGQLPQ-TFIKDVHLMVADQWTAAQACVKAGAHCIT 103 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCH----HHHHHhcc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEE
Confidence 345677888888888899998763 3322221 1223 33333333 23333333333 44568899999999999
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe-------eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN-------ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-------i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+-.|+.+ ...++++.+|++|.+ +.+++-+..+...+.+...+. . +|.|-++..
T Consensus 104 ~H~Ea~~-------------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~----~---vD~VLvMtV 163 (254)
T PRK14057 104 LQAEGDI-------------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS----D---VEVIQLLAV 163 (254)
T ss_pred Eeecccc-------------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH----h---CCEEEEEEE
Confidence 9888631 234667888888875 456666666555555544432 2 567777776
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCC--Cc
Q psy8190 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNT--KT 320 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~--~~ 320 (348)
.| |. ..+.. . ...++-+..+|.+++. ..|.+-+| +..+.......+|||.++.|..+...... ..
T Consensus 164 ~P--Gf--gGQ~F-i-~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i 234 (254)
T PRK14057 164 NP--GY--GSKMR-S-SDLHERVAQLLCLLGDKREGKIIVIDGS---LTQDQLPSLIAQGIDRVVSGSALFRDDRLVENT 234 (254)
T ss_pred CC--CC--Cchhc-c-HHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHH
Confidence 64 32 12211 1 2334444455544443 23555443 23344556788999999888765432111 01
Q ss_pred hHHHHHHHHcCCC
Q psy8190 321 NDDSKLLKKLGIN 333 (348)
Q Consensus 321 ~~~~~~i~~~G~~ 333 (348)
+...+++..+|-+
T Consensus 235 ~~l~~~~~~~~~~ 247 (254)
T PRK14057 235 RSWRAMFKVAGDT 247 (254)
T ss_pred HHHHHHHhhcCCc
Confidence 3445555555543
No 193
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.21 E-value=0.015 Score=55.35 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCccccccCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEEecC---
Q psy8190 82 CPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCLTLG--- 154 (348)
Q Consensus 82 C~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~~~g--- 154 (348)
|-+++.. ....| .-+.++|...++.++.. +...|-+.|| + |+ -.+++.++++..++.|+ ++.++..
T Consensus 78 CFa~A~~--ag~vY-Ept~eqi~~Ml~~lk~e~p~~~~aIq~tGG-E-PT--vr~DL~eiv~~a~e~g~~hVqinTnGir 150 (475)
T COG1964 78 CFAYAEE--AGYIY-EPTLEQIREMLRNLKKEHPVGANAVQFTGG-E-PT--LRDDLIEIIKIAREEGYDHVQLNTNGIR 150 (475)
T ss_pred CcCchhh--cCccc-CCCHHHHHHHHHHHHhcCCCCCceeEecCC-C-cc--chhhHHHHHHHHhhcCccEEEEccCcee
Confidence 5555421 22345 47889999888888754 3455777777 3 33 34889999999999876 6666533
Q ss_pred -CCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCe-ee--EeEeeecCCCHHHHHHHHH
Q psy8190 155 -MLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-IC--CGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 155 -~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~--~~~i~Glget~e~~~~~l~ 229 (348)
..+.+..+.|++||++.+.+..+. +++.+.+. .-++-.+++.++++|+. +. .+++= |-+..++-+.++
T Consensus 151 lA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~r--gvNd~~lG~iir 223 (475)
T COG1964 151 LAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIR--GVNDHELGAIIR 223 (475)
T ss_pred eccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhc--ccChHHHHHHHH
Confidence 345899999999999999999988 77766554 33444589999999986 32 33333 555566667777
Q ss_pred HHHhc
Q psy8190 230 QLANL 234 (348)
Q Consensus 230 ~l~~l 234 (348)
+....
T Consensus 224 fa~~n 228 (475)
T COG1964 224 FALNN 228 (475)
T ss_pred HHHhc
Confidence 76654
No 194
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=97.16 E-value=0.053 Score=53.68 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHH----HHHhCCCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYR----LKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~----Lk~aG~~~ 171 (348)
++.++-++.++.+.+.|++.|-.+.. ..+..+.+.+ +.+.+. +..+++- ....++.++. +..++.++
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p--~~s~~d~e~v----~~i~~~~~~~~i~al-~r~~~~did~a~~al~~~~~~~ 92 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFP--VSSPGDFEAV----QRIARTVKNPRVCGL-ARCVEKDIDAAAEALKPAEKFR 92 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECC--CCCHHHHHHH----HHHHHhCCCCEEEEE-cCCCHHhHHHHHHhccccCCCE
Confidence 79999999999999999999866322 1122333333 444332 3444422 2233444444 44457888
Q ss_pred eeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 172 YNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 172 i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.+.+-+++-.. ..++.. ...+...++++.+++.|..+..+...+.--+++.+.+.++.+.+.+ ++.+.
T Consensus 93 v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G--a~~i~------ 164 (494)
T TIGR00973 93 IHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAG--ATTIN------ 164 (494)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC--CCEEE------
Confidence 988877765443 344432 2345556788999999998776666665556788888888888887 65533
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---ee--CCeeccCCCCC
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FY--GDKLLTTDNTK 319 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~--~~~~~~~~g~~ 319 (348)
.+.|- ...+|.++.+++...|..+|.. .+.++..-|| +..-....++.+||+.+ +. |+ .+.+..
T Consensus 165 l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGE---RaGNa~ 237 (494)
T TIGR00973 165 IPDTV----GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGE---RAGNAA 237 (494)
T ss_pred eCCCC----CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccc---cccCcc
Confidence 24442 3467789999999888888753 2444422233 11234566899999988 22 22 123344
Q ss_pred chHHHHHHHH
Q psy8190 320 TNDDSKLLKK 329 (348)
Q Consensus 320 ~~~~~~~i~~ 329 (348)
.+++.-.++.
T Consensus 238 le~vv~~L~~ 247 (494)
T TIGR00973 238 LEEVVMALKV 247 (494)
T ss_pred HHHHHHHHHH
Confidence 4566555543
No 195
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.13 E-value=0.094 Score=52.83 Aligned_cols=211 Identities=15% Similarity=0.130 Sum_probs=133.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEE---e-cC------CCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCL---T-LG------MLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~---~-~g------~l~~e~l 161 (348)
+..++++..+..+.+.|+..+-+.||.+. ....+++++..+-+.+....+..-+ | +| .+-+..+
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v 102 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFV 102 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHH
Confidence 67889999999988899999977766321 1112445555544444433333333 1 22 2334577
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee--ecCCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~--Glget~e~~~~~l~~l~~l~~~~~ 239 (348)
+...+.|++.+.+ ++.+ ...+....+++.+++.|..+...+.| ....|.+.+.+.++.+.+++ ++
T Consensus 103 ~~a~~~Gidv~Ri--------fd~l---nd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G--ad 169 (596)
T PRK14042 103 KLAVNNGVDVFRV--------FDAL---NDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG--CD 169 (596)
T ss_pred HHHHHcCCCEEEE--------cccC---cchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC--CC
Confidence 7888899997653 3322 35667778899999999976655444 33889999999999999998 77
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeeeCCe-ec-c
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFYGDK-LL-T 314 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~~~~-~~-~ 314 (348)
.|.+ +.| ....+|....+++...|..++ ..|.+- .|+ +..-....|+.+||+.+=.... +. .
T Consensus 170 ~I~I------kDt----aG~l~P~~v~~lv~alk~~~~-ipi~~H--~Hnt~Gla~an~laAieaGad~iD~ai~glGg~ 236 (596)
T PRK14042 170 SIAI------KDM----AGLLTPTVTVELYAGLKQATG-LPVHLH--SHSTSGLASICHYEAVLAGCNHIDTAISSFSGG 236 (596)
T ss_pred EEEe------CCc----ccCCCHHHHHHHHHHHHhhcC-CEEEEE--eCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence 6543 222 234677888888888887664 222221 121 2223345689999998821100 00 1
Q ss_pred CCCCCchHHHHHHHHcCCCc
Q psy8190 315 TDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~G~~p 334 (348)
+.+++.++...+++..|+.+
T Consensus 237 tGn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 237 ASHPPTEALVAALTDTPYDT 256 (596)
T ss_pred CCcHhHHHHHHHHHhcCCCC
Confidence 23344578888999999874
No 196
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=97.12 E-value=0.14 Score=51.08 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=124.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe-----cCC--CCHHHHHHHHHhCC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT-----LGM--LNENQAYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~-----~g~--l~~e~l~~Lk~aG~ 169 (348)
.++.++-++.++.+.+.|++.|-.+-. ..++.+.+.+..+.+.-. .+..++.- .+. -.+..++.+.++|.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p--~~s~~d~~~v~~i~~~~~-~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~ 95 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWP--GANPKDVQFFWQLKEMNF-KNAKIVAFCSTRRPHKKVEEDKMLQALIKAET 95 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCChHHHHHHHHHHHhCC-CCcEEEEEeeecCCCCCCchHHHHHHHhcCCC
Confidence 379999999999999999999866421 112234444444432100 13444432 121 22457899999999
Q ss_pred CeeeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe---eecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 170 DYYNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGI---IGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 170 ~~i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i---~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+.+.+.+-+++-..+ .++.. ...+...++++.+++.|+.+..... -|.--+++.+.+.++.+.+.+ ++.+.+
T Consensus 96 ~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aG--ad~i~i 173 (526)
T TIGR00977 96 PVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAG--ADWLVL 173 (526)
T ss_pred CEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCC--CCeEEE
Confidence 999988877654443 44432 2455666778999999998754333 343356788889999988887 776543
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee
Q psy8190 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
. .| ....+|.++.+++...|..+|...+.+-+ || +..-....|+.+||+.+
T Consensus 174 ~------DT----vG~~~P~~v~~li~~l~~~~~~~~i~vH~--HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 174 C------DT----NGGTLPHEISEITTKVKRSLKQPQLGIHA--HNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred e------cC----CCCcCHHHHHHHHHHHHHhCCCCEEEEEE--CCCCChHHHHHHHHHHhCCCEE
Confidence 2 34 23567889999999998888753333221 32 11234566899999998
No 197
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=97.11 E-value=0.11 Score=51.73 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=132.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---CcEEEEe----cCCC---CHHHHHHHHH
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCLT----LGML---NENQAYRLKK 166 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~----~g~l---~~e~l~~Lk~ 166 (348)
.++.++.++.++.+.+.|++.|-++...- +..+. +.++.+.+. +..++.- ...+ .+..++.+.+
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~a--s~~d~----~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~ 96 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGS--NPKDT----EFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLD 96 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcC--ChhHH----HHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHh
Confidence 38999999999999999999987743211 22233 334444431 3444321 1222 3567889999
Q ss_pred hCCCeeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEe---eecCCCHHHHHHHHHHHHhcCCCCCe
Q psy8190 167 VGLDYYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGI---IGLSESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 167 aG~~~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i---~Glget~e~~~~~l~~l~~l~~~~~~ 240 (348)
+|++.+.+.+-+++-.. ..++.. ...+...++++.+++.|+.+..+.. =|.-.+++.+.+.++.+.+.+ ++.
T Consensus 97 ~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G--ad~ 174 (524)
T PRK12344 97 AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG--ADW 174 (524)
T ss_pred CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCC--CCe
Confidence 99999999887765433 344432 3566777888999999998765444 122345677788888888887 776
Q ss_pred eecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee---ee--CCee
Q psy8190 241 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI---FY--GDKL 312 (348)
Q Consensus 241 i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~---~~--~~~~ 312 (348)
+. .+.|- ...+|.++.+++...+..+ + +.++..-|| ++ .-....|+.+||+.+ +. |+
T Consensus 175 i~------l~DTv----G~~~P~~v~~li~~l~~~~-~--v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGE-- 239 (524)
T PRK12344 175 VV------LCDTN----GGTLPHEVAEIVAEVRAAP-G--VPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGE-- 239 (524)
T ss_pred EE------EccCC----CCcCHHHHHHHHHHHHHhc-C--CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc--
Confidence 54 34453 4567888888888877665 3 333321232 11 234566899999998 22 22
Q ss_pred ccCCCCCchHHHHHHH-HcCCC
Q psy8190 313 LTTDNTKTNDDSKLLK-KLGIN 333 (348)
Q Consensus 313 ~~~~g~~~~~~~~~i~-~~G~~ 333 (348)
.+.+...+++.-.+. ..|+.
T Consensus 240 -RaGNa~lE~lv~~L~~~~g~~ 260 (524)
T PRK12344 240 -RCGNANLCSIIPNLQLKMGYE 260 (524)
T ss_pred -cccCcCHHHHHHHHHhccCCC
Confidence 123344466654444 46763
No 198
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.09 E-value=0.14 Score=45.06 Aligned_cols=182 Identities=10% Similarity=0.084 Sum_probs=103.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCC-HHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLN-ENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~-~e~l~~Lk~aG~~~i 172 (348)
.+.-.+.++++.+.+.|++.+++- +|-+-|. . ..=.++++.+++. .+.+.++...-+ ...++.+.++|.+.+
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn-~--tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i 85 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN-L--TFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMI 85 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCc-c--ccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEE
Confidence 345677788888888899988763 3322221 1 1122444555442 344444444333 456889999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+-+|+.+ ...++++.+|++|++. ++-+..+...+.+...+ +. .+.+-++... ||+
T Consensus 86 ~~H~Ea~~-------------~~~~~l~~ik~~g~k~--GlalnP~Tp~~~i~~~l----~~---~D~vlvMtV~--PGf 141 (220)
T PRK08883 86 TFHVEASE-------------HVDRTLQLIKEHGCQA--GVVLNPATPLHHLEYIM----DK---VDLILLMSVN--PGF 141 (220)
T ss_pred EEcccCcc-------------cHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHH----Hh---CCeEEEEEec--CCC
Confidence 99888631 2445678888899865 44444443334333222 22 5677777665 454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.-+..-+ ..++.+..+|.+.++ ..|.+-+| +..+.......+|||.++.|..+.
T Consensus 142 gGq~fi~----~~lekI~~l~~~~~~~~~~~~I~vdGG---I~~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 142 GGQSFIP----HTLDKLRAVRKMIDESGRDIRLEIDGG---VKVDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred CCceecH----hHHHHHHHHHHHHHhcCCCeeEEEECC---CCHHHHHHHHHcCCCEEEEeHHHh
Confidence 3222222 233344444544442 22444343 223444557899999998887553
No 199
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.07 E-value=0.18 Score=44.66 Aligned_cols=179 Identities=15% Similarity=0.180 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeeec
Q psy8190 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~ 174 (348)
+.-.+.++++.+.+ |++.+++- +|-+-| ... .=.++++.+++ ..+.+.++.... +...++.+.++|.+.+.+
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVP-N~t--fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVP-NLT--LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCC-Ccc--cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 34566677777766 88888663 332222 111 11234555554 233444444333 345788999999999999
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-.|+.. ....++++.+|++|++. ++-+..+...+.+...+. . +|.|-++...| |-.
T Consensus 89 H~Ea~~------------~~~~~~i~~Ik~~G~ka--GlalnP~T~~~~l~~~l~----~---vD~VLvMsV~P--Gf~- 144 (229)
T PRK09722 89 HPETIN------------GQAFRLIDEIRRAGMKV--GLVLNPETPVESIKYYIH----L---LDKITVMTVDP--GFA- 144 (229)
T ss_pred CccCCc------------chHHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHH----h---cCEEEEEEEcC--CCc-
Confidence 888631 12336788889999875 444444444444433332 2 56777777664 422
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
.+. . ..+.++-+..+|.+++. ..|.+-+| +..+.......+|||.++.|.+
T Consensus 145 -GQ~-f-i~~~l~KI~~lr~~~~~~~~~~~IeVDGG---I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 145 -GQP-F-IPEMLDKIAELKALRERNGLEYLIEVDGS---CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred -chh-c-cHHHHHHHHHHHHHHHhcCCCeEEEEECC---CCHHHHHHHHHcCCCEEEEChH
Confidence 121 1 12445555556655543 22555443 2234445678899999988854
No 200
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=97.02 E-value=0.22 Score=49.23 Aligned_cols=212 Identities=15% Similarity=0.100 Sum_probs=125.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC-----------cEEEEecCCCCHHHHHHHH
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG-----------LETCLTLGMLNENQAYRLK 165 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~-----------~~i~~~~g~l~~e~l~~Lk 165 (348)
.++.++-++.++.+.+.|++.|-++. |... +...+.++.+.+.. ..+. ..+....+.++.-.
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~----Pa~s--~~e~e~i~~i~~~~~~~~~~~~~l~~~i~-a~~R~~~~dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGF----PGSS--EEEFEAVKTIAKTVGNEVDEETGYVPVIC-GIARCKKRDIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC----CCCC--HHHHHHHHHHHHhcccccccccccceEEe-eecccCHhhHHHHH
Confidence 47999999999999999999886633 2111 22233344443321 1121 22333444555555
Q ss_pred Hh----CCCeeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCCC
Q psy8190 166 KV----GLDYYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 166 ~a----G~~~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~~ 237 (348)
++ |++++.+.+-+++... ..++.. ...+...++++.+++.|+. +..+.-.+.--+++.+.+.++.+.+.+
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G-- 252 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG-- 252 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC--
Confidence 55 7888988777765443 345432 3566777889999999985 333332222223555677777888887
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e--
Q psy8190 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y-- 308 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~-- 308 (348)
++.+. .+.| ....+|.++.+++...|..+|+. .+.++..-|| +..-....|+.+||+.+- .
T Consensus 253 ad~I~------l~DT----vG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~Gi 322 (503)
T PLN03228 253 ATSVG------IADT----VGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGI 322 (503)
T ss_pred CCEEE------EecC----CCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecccc
Confidence 66542 2334 24567888899998888877753 2333322232 112345668999999982 2
Q ss_pred CCeeccCCCCCchHHHHHHHHc
Q psy8190 309 GDKLLTTDNTKTNDDSKLLKKL 330 (348)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~i~~~ 330 (348)
|+ .+.+...+++...++..
T Consensus 323 GE---RaGNa~lEevv~~L~~~ 341 (503)
T PLN03228 323 GE---RSGNASLEEVVMALKCR 341 (503)
T ss_pred cc---ccCCccHHHHHHHHHhc
Confidence 22 12334456777777664
No 201
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.93 E-value=0.19 Score=43.55 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=97.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCH--HHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNE--NQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~--e~l~~Lk~aG~~~i~ 173 (348)
.++++.++.++.+ +.|++.|-++.. ...+.=.+.++.+++. +..+-+..-.++. ..++.+.++|.+.+.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~------l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTP------LIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVT 81 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCH------HHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence 4678888888887 677877655321 1112224556666553 3333333222333 368999999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..++.+ ....+.++.+++.|+.+... +.+. .| ..+.+..+.+++ ++.+.++ ||+.
T Consensus 82 vh~~~~~------------~~~~~~i~~~~~~g~~~~~~-~~~~-~t---~~~~~~~~~~~g--~d~v~~~-----pg~~ 137 (206)
T TIGR03128 82 VLGVADD------------ATIKGAVKAAKKHGKEVQVD-LINV-KD---KVKRAKELKELG--ADYIGVH-----TGLD 137 (206)
T ss_pred EeccCCH------------HHHHHHHHHHHHcCCEEEEE-ecCC-CC---hHHHHHHHHHcC--CCEEEEc-----CCcC
Confidence 7665421 33456788899999877554 2222 23 223334445566 7777553 2322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
-....+... +.+...+..++...+.+.+|- ..+.....+.+||+.+..|..+
T Consensus 138 ~~~~~~~~~----~~i~~l~~~~~~~~i~v~GGI---~~~n~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 138 EQAKGQNPF----EDLQTILKLVKEARVAVAGGI---NLDTIPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred cccCCCCCH----HHHHHHHHhcCCCcEEEECCc---CHHHHHHHHHcCCCEEEEeehh
Confidence 111222222 233344444555445444432 2233345678999999887655
No 202
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.19 Score=43.71 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCC-HHHHHHHHHhCCCeeecc
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~-~e~l~~Lk~aG~~~i~~g 175 (348)
+...+-++++.+.+.|++.+++-=- +..-+ +.-.=..+++.+++. ...+.++...-+ ...++.+.++|.+.+++-
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghFVP--NiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H 91 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHFVP--NITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFH 91 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCcCC--CcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEE
Confidence 4456667777888889999876321 11111 222223455555542 344444444333 467899999999999988
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy8190 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+|+++ ...++++.+|+.|.+....+= -+|+-+.++.+ .+. +|.+-++...|--|
T Consensus 92 ~E~~~-------------~~~r~i~~Ik~~G~kaGv~ln---P~Tp~~~i~~~---l~~---vD~VllMsVnPGfg---- 145 (220)
T COG0036 92 AEATE-------------HIHRTIQLIKELGVKAGLVLN---PATPLEALEPV---LDD---VDLVLLMSVNPGFG---- 145 (220)
T ss_pred eccCc-------------CHHHHHHHHHHcCCeEEEEEC---CCCCHHHHHHH---Hhh---CCEEEEEeECCCCc----
Confidence 87432 234567788888887654422 34554433332 222 57888887776432
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CceeccccccccchhhHHHHHHhCcceeeeCCeeccC
Q psy8190 256 GSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 315 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~---~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~ 315 (348)
.+.. ..+.+.-+..+|-+++. ..|.+-+| +..+....+..+|||.++.|..+...
T Consensus 146 GQ~F--i~~~l~Ki~~lr~~~~~~~~~~IeVDGG---I~~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 146 GQKF--IPEVLEKIRELRAMIDERLDILIEVDGG---INLETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred cccc--CHHHHHHHHHHHHHhcccCCeEEEEeCC---cCHHHHHHHHHcCCCEEEEEEEEeCC
Confidence 2221 13566666777777774 23555443 33455666788999999988865433
No 203
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=96.86 E-value=0.13 Score=49.58 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=125.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecC---CCCHHHHHHHHHhCCCee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLG---MLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g---~l~~e~l~~Lk~aG~~~i 172 (348)
.+++++-++.++.+.+.|+..|-.+.. ..+ ++-.+.++.+. ..+..+++... ...+..++.+.++|++++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p--~~s----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFP--VAS----PGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCC--cCC----hhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEE
Confidence 479999999999999999999866433 112 23334444444 22331121111 223457999999999999
Q ss_pred eccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 173 NHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 173 ~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+-+-|++-..+ .++.. ...+...++++.+++.|+.+..+..-...-+++.+.+.++.+.+.+ .+.|.+
T Consensus 94 ~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g--a~~i~l------ 165 (409)
T COG0119 94 HIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG--ADRINL------ 165 (409)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC--CcEEEE------
Confidence 988888654443 33322 2566777889999999988776655555677888889988888776 555432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cc--hhhHHHHHHhCccee
Q psy8190 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MG--ETTQAFCFLAGANSI 306 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~-l~--~~~~~~~l~~GAn~~ 306 (348)
+.|- ...+|.++..++...+..+|+ .+.++..-|| ++ --....|+.+||+.+
T Consensus 166 ~DTv----G~~~P~~~~~~i~~l~~~v~~-~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 166 PDTV----GVATPNEVADIIEALKANVPN-KVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred CCCc----CccCHHHHHHHHHHHHHhCCC-CCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 4442 346788999999999988885 2333321132 11 234567899999998
No 204
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.81 E-value=0.036 Score=53.23 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=88.3
Q ss_pred ecCCCCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCH-HHHHHHHH
Q psy8190 152 TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESR-DQRAELIF 229 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~-e~~~~~l~ 229 (348)
+...++++.+++..+.+++-+++++.| ++++..++-+.....+.++.++++.++|+.+.+.+++=.|-+. +++.+++.
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 345689999999999999999999999 7999998877778999999999999999988776555334443 67889999
Q ss_pred HHHhcCC--CCCeeecccccccCCCCCC----CCCCCCHHHHHHHHHHH
Q psy8190 230 QLANLNP--YPESVPINNLVQIKGTPLY----GSSILDPLEFIRTIAVA 272 (348)
Q Consensus 230 ~l~~l~~--~~~~i~~~~l~P~~gT~l~----~~~~~~~~~~~~~~a~~ 272 (348)
.|.+++. .|...++ ..+|..=|.+. ...+.+.++..+++...
T Consensus 202 dL~~~~~~~~P~v~S~-avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~i 249 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSV-AVVPVGLTRFRPEEDELTPVTPECARRVIAQV 249 (433)
T ss_pred HHHhhcccCCCceeEE-EEEccccccCCCCCCCCccCCHHHHHHHHHHH
Confidence 9998821 1333232 23565555543 33566777666666554
No 205
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.80 E-value=0.25 Score=43.74 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=102.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCC-CHHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML-NENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l-~~e~l~~Lk~aG~~~i 172 (348)
.++-.+.++++.+.+.|++.+++- +|-+-|. . ..=.++++.+++. .+.+.++.-.- ....++.+.++|++.+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn-~--~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN-L--SFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCC-c--CcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEE
Confidence 345677788888888999998763 3322221 1 1123555666553 33333333333 3456789999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
++-.|+... ...++++.+++.|..+...+. .....+++. .+.+.. .++.|-+... .||.
T Consensus 93 tvH~ea~~~------------~~~~~l~~ik~~G~~~gval~--p~t~~e~l~----~~l~~~-~vD~Vl~m~v--~pG~ 151 (228)
T PTZ00170 93 TFHIEATED------------DPKAVARKIREAGMKVGVAIK--PKTPVEVLF----PLIDTD-LVDMVLVMTV--EPGF 151 (228)
T ss_pred EEeccCCch------------HHHHHHHHHHHCCCeEEEEEC--CCCCHHHHH----HHHccc-hhhhHHhhhc--ccCC
Confidence 986665311 144678888889976654433 222333332 222111 1445444333 3443
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. .+ ... ...+.-+..+|...+...|.+.+| +..+.-..+..+|||.++.|..+
T Consensus 152 ~--gq-~~~-~~~~~ki~~~~~~~~~~~I~VdGG---I~~~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 152 G--GQ-SFM-HDMMPKVRELRKRYPHLNIQVDGG---INLETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred C--Cc-Eec-HHHHHHHHHHHHhcccCeEEECCC---CCHHHHHHHHHcCCCEEEEchHH
Confidence 2 11 111 233444455566677666766664 22344456788999999888655
No 206
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.79 E-value=0.056 Score=50.80 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=119.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhc-------CcEEE-E--ecCCCCHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKI-------GLETC-L--TLGMLNENQA 161 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~-------~~~i~-~--~~g~l~~e~l 161 (348)
+..++++-.++.+.+.|+.++-+-||-+.. ...+++++.++=+.++.. |-++- . -+..+-+..+
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 567888888999989999998776662211 112344444443333322 21110 0 1223444566
Q ss_pred HHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--CCCHHHHHHHHHHHHhcCCCCC
Q psy8190 162 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l~~~~~ 239 (348)
+...+.|+|.+. +|+.++ +......+++.+++.|..+...+.|-. -+|.+-+++..+.+.+++ ++
T Consensus 105 ~ka~~nGidvfR--------iFDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g--~D 171 (472)
T COG5016 105 EKAAENGIDVFR--------IFDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG--VD 171 (472)
T ss_pred HHHHhcCCcEEE--------echhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC--CC
Confidence 777778988664 566654 445556778889999998877777766 799999999999999999 88
Q ss_pred eeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc-ccccchhhHHHHHHhCccee
Q psy8190 240 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG-RKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 240 ~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g-~~~l~~~~~~~~l~~GAn~~ 306 (348)
+|.+--. ....++.+..+++...+..++ ..+.+-+. ...+..-....++.||||.+
T Consensus 172 SIciKDm----------aGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 172 SICIKDM----------AGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred EEEeecc----------cccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchh
Confidence 8765321 134677888889999988887 33332110 01122334456899999998
No 207
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.79 E-value=0.16 Score=46.30 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=98.1
Q ss_pred ceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc------cHHH
Q psy8190 61 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR------DLDN 134 (348)
Q Consensus 61 ~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~------~~~~ 134 (348)
+..+.+++|+ |+- +|+. . .+| .+++++++.++.+.+.|+.-|=++|..+.|... ..++
T Consensus 14 ~~~imGIlNv-TpD--------SFsd---g--g~~--~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~R 77 (282)
T PRK11613 14 HPHVMGILNV-TPD--------SFSD---G--GTH--NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDR 77 (282)
T ss_pred CceEEEEEcC-CCC--------CCCC---C--CCC--CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHH
Confidence 3456677777 443 3332 1 233 589999999999999999988887653333221 3345
Q ss_pred HHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeee--ccCCCCHHHHhcc----------CC---CCC-------
Q psy8190 135 IENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYN--HNLDTSPKLYGDI----------IS---TRD------- 191 (348)
Q Consensus 135 ~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~--~g~et~~e~l~~i----------~~---~~~------- 191 (348)
+..+++.+++. ++ .++..+...+.++.--++|++-|+ .|+. .+++++.+ +. +.+
T Consensus 78 v~pvI~~l~~~~~~--~ISIDT~~~~va~~AL~~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y 154 (282)
T PRK11613 78 VIPVVEAIAQRFEV--WISVDTSKPEVIRESAKAGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKY 154 (282)
T ss_pred HHHHHHHHHhcCCC--eEEEECCCHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCc
Confidence 66677777753 44 457888888888888888888764 1332 23433311 10 011
Q ss_pred -------HHHHHHHHHHHHHcCC---eeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy8190 192 -------YENRLNTLKNVRNVGI---NICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 192 -------~~~~~~~i~~~~~~G~---~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.+...+.++.+.++|+ ++..+--+|++.+.++-.+.+..+..+
T Consensus 155 ~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 155 DDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEF 207 (282)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHH
Confidence 1344566788889999 677777788888887766665555444
No 208
>PLN02321 2-isopropylmalate synthase
Probab=96.73 E-value=0.41 Score=48.65 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=130.8
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc----C-cEEEEecCCCCHHHHHHHHHhC--C
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----G-LETCLTLGMLNENQAYRLKKVG--L 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~----~-~~i~~~~g~l~~e~l~~Lk~aG--~ 169 (348)
.++.++-++.++.+.+.|++.|-.+.- ..+..+.+.+..+.+.+... . +..-+..+....+.++.-.+++ .
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP--~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a 181 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFP--IASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHA 181 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCc--CCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCC
Confidence 389999999999999999999877432 12234555555554443221 0 1212234445566677777763 3
Q ss_pred --CeeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 170 --DYYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 170 --~~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
.++.+.+-+++-.. ..++.. ...+...++++.+++.|.. +..+.-.+.--+++.+.+.++.+.+.+ ++.|.
T Consensus 182 ~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG--a~~I~- 258 (632)
T PLN02321 182 KRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG--ATTLN- 258 (632)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC--CCEEE-
Confidence 35776665665433 344432 2455566788888999874 444443333345777888888888887 66543
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee---eeCCeeccCC
Q psy8190 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLTTD 316 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~~~ 316 (348)
.+.|- ...+|.++.+++...+..+|.. .+.++..-|| +..-....|+.+||+.+ +.|-- -.+.
T Consensus 259 -----L~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlG-ERaG 328 (632)
T PLN02321 259 -----IPDTV----GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIG-ERAG 328 (632)
T ss_pred -----ecccc----cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-cccc
Confidence 24442 3456788999999988888753 2444422233 22234566899999998 22210 0233
Q ss_pred CCCchHHHHHHHHcC
Q psy8190 317 NTKTNDDSKLLKKLG 331 (348)
Q Consensus 317 g~~~~~~~~~i~~~G 331 (348)
+...+++.-+++..|
T Consensus 329 Na~LEevv~~L~~~~ 343 (632)
T PLN02321 329 NASLEEVVMAIKCRG 343 (632)
T ss_pred CccHHHHHHHHHhcc
Confidence 444567777776533
No 209
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.62 E-value=0.35 Score=43.57 Aligned_cols=201 Identities=14% Similarity=0.165 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+|.++. +.+.+.|++.+++.+-... ......-.++++.+.+ .++++.+..|..+.+.++.+.++|++++.+|-.
T Consensus 31 dp~~~a---~~~~~~G~~~l~v~Dl~~~--~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 31 DPVELA---QRYDEEGADELVFLDITAS--SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA 105 (254)
T ss_pred CHHHHH---HHHHHcCCCEEEEEcCCcc--cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 454544 4556789999988764211 1122334566666655 468888899999999999999999999988764
Q ss_pred C--CHHHHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeE--------------eeec-CCCHHHHHHHHHHHHhcCCC
Q psy8190 178 T--SPKLYGDIISTRDYENRLNTLKNVRNVG---INICCGG--------------IIGL-SESRDQRAELIFQLANLNPY 237 (348)
Q Consensus 178 t--~~e~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~--------------i~Gl-get~e~~~~~l~~l~~l~~~ 237 (348)
. ++++++.+ .+ ..| +-++.++ +-|- .++..+..+.++.+.+.+
T Consensus 106 ~~~~p~~~~~~------------~~---~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G-- 168 (254)
T TIGR00735 106 AVKNPELIYEL------------AD---RFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG-- 168 (254)
T ss_pred HhhChHHHHHH------------HH---HcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC--
Confidence 4 23333322 11 123 2233332 1222 334566777778888887
Q ss_pred CCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhC-cceeeeCCeeccCC
Q psy8190 238 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAG-ANSIFYGDKLLTTD 316 (348)
Q Consensus 238 ~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~G-An~~~~~~~~~~~~ 316 (348)
.+.+.++... ..|| .+.++. .++...+... +..+-+++|-.. .+.....+..| |+.++.|..+ ...
T Consensus 169 ~~~iivt~i~-~~g~----~~g~~~----~~~~~i~~~~-~ipvia~GGi~s--~~di~~~~~~g~~dgv~~g~a~-~~~ 235 (254)
T TIGR00735 169 AGEILLTSMD-KDGT----KSGYDL----ELTKAVSEAV-KIPVIASGGAGK--PEHFYEAFTKGKADAALAASVF-HYR 235 (254)
T ss_pred CCEEEEeCcC-cccC----CCCCCH----HHHHHHHHhC-CCCEEEeCCCCC--HHHHHHHHHcCCcceeeEhHHH-hCC
Confidence 7887776543 2444 122332 2222233322 223334443222 22233456666 9998776533 222
Q ss_pred CCCchHHHHHHHHcCCCc
Q psy8190 317 NTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 317 g~~~~~~~~~i~~~G~~p 334 (348)
.-+..+..+.+++.|+.+
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 334678889999999864
No 210
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=96.51 E-value=0.66 Score=46.75 Aligned_cols=226 Identities=13% Similarity=0.058 Sum_probs=127.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHH----HHHHHHhCCCe
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQ----AYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~----l~~Lk~aG~~~ 171 (348)
.+++++=++.++.+.+.|++.|-.+ +..++..+.+.+..+++... ..+..+++ .....++. ++.+..++..+
T Consensus 44 ~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp~~s~~D~e~v~~i~~~~l~~~~~~i~a-l~~~~~~did~a~~a~~~~~~~~ 120 (564)
T TIGR00970 44 PMSPARKRRYFDLLVRIGFKEIEVG--FPSASQTDFDFVREIIEQGAIPDDVTIQV-LTQSREELIERTFEALSGAKRAT 120 (564)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHhcCCCCCcEEEE-EcCCchhhHHHHHHHhcCCCCCE
Confidence 4889999999999999999998764 22333233333333333210 01344432 22222233 33444444457
Q ss_pred eeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCee----e--EeEeeecC----CCHHHHHHHHHHHHhcCCCC
Q psy8190 172 YNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINI----C--CGGIIGLS----ESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 172 i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i----~--~~~i~Glg----et~e~~~~~l~~l~~l~~~~ 238 (348)
|.+.+-+++-..+ .++.. ...+...++++.+++.|... . ..+.|+.. -.++.+.+.++.+.+.+ .
T Consensus 121 v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag--~ 198 (564)
T TIGR00970 121 VHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVW--A 198 (564)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhC--C
Confidence 8887777654443 34432 24455566777788887632 2 24455542 24677788888888876 3
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e--C
Q psy8190 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y--G 309 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~--~ 309 (348)
....--..+-.|.|- ...+|.++.+++..++..+|+. .+.++..-|| +.--....|+.+||+.+= . |
T Consensus 199 ~~~~~~~~i~l~DTv----G~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~G 274 (564)
T TIGR00970 199 PTPERPIIFNLPATV----EMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNG 274 (564)
T ss_pred CccCCeeEEEecccc----CccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCC
Confidence 211100111234553 4568889999999998888763 3444432233 112345668999999982 1 2
Q ss_pred CeeccCCCCCchHHHHHHHHcCCCc
Q psy8190 310 DKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 310 ~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
+ .+.+...+++.-++...|+.+
T Consensus 275 E---RaGNa~le~lv~~L~~~g~~t 296 (564)
T TIGR00970 275 E---RTGNVDLVTLALNLYTQGVSP 296 (564)
T ss_pred c---cccCccHHHHHHHHHhcCCCC
Confidence 2 133344567777777778653
No 211
>KOG3111|consensus
Probab=96.51 E-value=0.43 Score=40.46 Aligned_cols=195 Identities=14% Similarity=0.194 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCC-CHHHHHHHHHhCCCee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI---GLETCLTLGML-NENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l-~~e~l~~Lk~aG~~~i 172 (348)
+...+.+++..+.+.|++.+++. +| +.-+..++ =--+++.+++. ..-+-++.-.. +++.++.+.++|++.+
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg-~FVpNiT~--G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~ 91 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDG-HFVPNITF--GPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLF 91 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecc-cccCCccc--chHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceE
Confidence 45667788888889999998763 22 21122221 12345566552 21123333333 3467899999999999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+-.|..+ ++.+.++.+++.|+.+.+-+= .|...+++...+. . .|.+-++..-| |
T Consensus 92 tfH~E~~q-------------~~~~lv~~ir~~Gmk~G~alk--PgT~Ve~~~~~~~----~---~D~vLvMtVeP--G- 146 (224)
T KOG3111|consen 92 TFHYEATQ-------------KPAELVEKIREKGMKVGLALK--PGTPVEDLEPLAE----H---VDMVLVMTVEP--G- 146 (224)
T ss_pred EEEEeecc-------------CHHHHHHHHHHcCCeeeEEeC--CCCcHHHHHHhhc----c---ccEEEEEEecC--C-
Confidence 98776532 256778899999998765432 2444455443332 2 56776666654 3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHH
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
|..+.- -++++.-+...|.-.|+..|.+-+| +++.....+..||||-++.|.-+.... .+.+.+..|++
T Consensus 147 -FGGQkF--me~mm~KV~~lR~kyp~l~ievDGG---v~~~ti~~~a~AGAN~iVaGsavf~a~--d~~~vi~~lr~ 215 (224)
T KOG3111|consen 147 -FGGQKF--MEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGAA--DPSDVISLLRN 215 (224)
T ss_pred -Cchhhh--HHHHHHHHHHHHHhCCCceEEecCC---cCcchHHHHHHcCCCEEEecceeecCC--CHHHHHHHHHH
Confidence 222221 2466677778888899988887664 334556678899999998887553322 23455555543
No 212
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=96.49 E-value=0.19 Score=45.40 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=113.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
..+.+.+++.++...+.|..-+=++++ . +.....+.+..+++.+++. +++ ++..+...+.++.-.++ |.+-|+
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~-~-~~~eE~~r~~~~v~~l~~~~~~p--lsIDT~~~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAG-T-AVEEEPETMEWLVETVQEVVDVP--LCIDSPNPAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCC-C-CchhHHHHHHHHHHHHHHhCCCC--EEEeCCCHHHHHHHHHhCCCCCEEE
Confidence 467889999999999999998888766 2 2234567888888888763 544 47788888888877777 876555
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHH----HHhcCCCCCeeeccccc
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQ----LANLNPYPESVPINNLV 247 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~----l~~l~~~~~~i~~~~l~ 247 (348)
++ .... +...+.+..++++|..+..-.+ -|.-+|.++..+.+.. +.+.+ +. -..++
T Consensus 97 -sI----------s~~~--~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G--I~---~~~Ii 158 (261)
T PRK07535 97 -SV----------SAEG--EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG--IP---PEDIY 158 (261)
T ss_pred -eC----------CCCC--ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC--CC---HhHEE
Confidence 11 1100 1122446667788887654334 3554566555444433 44444 21 12233
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee-----cc---ccccccchhhHHHHHHhCcceeeeC
Q psy8190 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR-----MS---AGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~-----~s---~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
.-||.-......-...+.++.+...+..+|+..+- .| +.|+.+..-+-.+++.+|.|.-+.+
T Consensus 159 lDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~n 228 (261)
T PRK07535 159 IDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD 228 (261)
T ss_pred EeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEeeC
Confidence 33443211111223456677777777777753322 22 2244444556677888999887553
No 213
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.42 E-value=0.018 Score=49.95 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--eccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCC-CHHHHHHHHHhCCCeeec
Q psy8190 99 SIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~ 174 (348)
+.-.+.++++.+.+.|+..+++ -+|-.-|.. ..=.++++.+++ ..+.+.++...- +...++.+.++|.+.+++
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~---~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~ 86 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL---TFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITF 86 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB----B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCcc---cCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEE
Confidence 4456677778888889998865 334222221 122345555555 334444443322 346799999999999998
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-+|+.+ +..++++.++++|+++... +..+ |+- +.+..+.+. ++.+-++...| |..
T Consensus 87 H~E~~~-------------~~~~~i~~ik~~g~k~Gia--lnP~-T~~---~~~~~~l~~---vD~VlvMsV~P--G~~- 141 (201)
T PF00834_consen 87 HAEATE-------------DPKETIKYIKEAGIKAGIA--LNPE-TPV---EELEPYLDQ---VDMVLVMSVEP--GFG- 141 (201)
T ss_dssp EGGGTT-------------THHHHHHHHHHTTSEEEEE--E-TT-S-G---GGGTTTGCC---SSEEEEESS-T--TTS-
T ss_pred cccchh-------------CHHHHHHHHHHhCCCEEEE--EECC-CCc---hHHHHHhhh---cCEEEEEEecC--CCC-
Confidence 887531 2345678888899877444 3333 332 222223222 67887777654 532
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+ .=..+.++-++.+|.+.+. ..|.+-+| +..+.......+|||.++.|..+
T Consensus 142 -Gq--~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGG---I~~~~~~~~~~aGad~~V~Gs~i 197 (201)
T PF00834_consen 142 -GQ--KFIPEVLEKIRELRKLIPENGLDFEIEVDGG---INEENIKQLVEAGADIFVAGSAI 197 (201)
T ss_dssp -SB----HGGHHHHHHHHHHHHHHHTCGSEEEEESS---ESTTTHHHHHHHT--EEEESHHH
T ss_pred -cc--cccHHHHHHHHHHHHHHHhcCCceEEEEECC---CCHHHHHHHHHcCCCEEEECHHH
Confidence 22 1223455666666666554 34555554 22334455778999999887543
No 214
>PRK14847 hypothetical protein; Provisional
Probab=96.38 E-value=0.86 Score=42.56 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=124.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----CcEEEEecCCCCHH----HHHHHHHh
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNEN----QAYRLKKV 167 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~~i~~~~g~l~~e----~l~~Lk~a 167 (348)
.++++|=++.++.+.+.|++.|-.+-- ..+..+ .+.++.|.+. +..+++-. ....+ .++...++
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~P--a~s~~e----~e~ir~I~~~~~~~~~~~i~~~~-r~~~~dId~a~e~~~~~ 122 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAFP--SASQTD----FDFVRKLIDERRIPDDVTIEALT-QSRPDLIARTFEALAGS 122 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC--CCCHHH----HHHHHHHHHhCCCCCCcEEEEEe-cCcHHHHHHHHHHhCCC
Confidence 378999999999999999999866321 112222 3444555433 23443322 22233 34444455
Q ss_pred CCCeeeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCee---eEeEeeec-CCC---HHHHHHHHHHHHhc-CC
Q psy8190 168 GLDYYNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINI---CCGGIIGL-SES---RDQRAELIFQLANL-NP 236 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i---~~~~i~Gl-get---~e~~~~~l~~l~~l-~~ 236 (348)
+..+|.+.+-+++-..+ .++.. .-.+...++++.+++.|... ...+-||. .-+ .+-+.+..+.+.+. +
T Consensus 123 ~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~g- 201 (333)
T PRK14847 123 PRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWG- 201 (333)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhC-
Confidence 56779999988766554 34322 23344557788888886631 12456666 333 34444444544333 4
Q ss_pred CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e-
Q psy8190 237 YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y- 308 (348)
Q Consensus 237 ~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~- 308 (348)
++......+. .+.|- ...+|.++.+.+...+..+++. .+.++..-|| +.......|+.+||+.+- .
T Consensus 202 -a~r~~a~~i~-l~DTV----G~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G 275 (333)
T PRK14847 202 -PTPQRKMIIN-LPATV----ESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFG 275 (333)
T ss_pred -CCccCCcEEE-eCCcc----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCc
Confidence 4443333322 24442 4567788888888777666541 2444422232 223345668999999982 1
Q ss_pred -CCeeccCCCCCchHHHHHHHHcCCCc
Q psy8190 309 -GDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 309 -~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
|+ ...+...+++...+...|+..
T Consensus 276 ~GE---RaGNa~lE~v~~~L~~~g~~~ 299 (333)
T PRK14847 276 NGE---RTGNVDLVALALNLERQGIAS 299 (333)
T ss_pred CCc---cccchhHHHHHHHHHhcCCCC
Confidence 22 123344577777777778763
No 215
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=96.19 E-value=0.56 Score=42.72 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=119.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CC-CCCcccHHHHHHHHHHHHhc--CcEEEEecCC---CC-HHHHHHHHHhC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WR-ELKDRDLDNIENMICEVKKI--GLETCLTLGM---LN-ENQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~-~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~---l~-~e~l~~Lk~aG 168 (348)
-.+++||.+.+..+.+.|..-+++-.- .. .-...+.+.+.++++.|++. ++-+.++.|. .+ ++.++.+....
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 378999999999999999888776432 11 11246889999999999985 6777766553 23 34555555556
Q ss_pred CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy8190 169 LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 169 ~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
-+..++++.+ +-. .....-..+.+...+.++.+++.|+.+... +| +..++. .+..+.+.+.-...+.+..+.
T Consensus 102 pd~asl~~gs~n~~-~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~e-v~----d~~~l~-~~~~l~~~G~l~~p~~~~~vl 174 (272)
T PF05853_consen 102 PDMASLNPGSMNFG-TRDRVYINTPADARELARRMRERGIKPEIE-VF----DPGHLR-NARRLIEKGLLPGPLLVNFVL 174 (272)
T ss_dssp -SEEEEE-S-EEES-GGCSEE---HHHHHHHHHHHHHTT-EEEEE-ES----SHHHHH-HHHHHHHTTSS-SSEEEEEEE
T ss_pred CCeEEecccccccc-cCCceecCCHHHHHHHHHHHHHcCCeEEEE-EE----cHHHHH-HHHHHHHCCCCCCCeEEEEcc
Confidence 7778877766 311 111111357889999999999999987665 33 344443 334444445211122222221
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc-ccccccchhhHHHHHHhCcceeee-CCeeccCCCCC------
Q psy8190 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMS-AGRKEMGETTQAFCFLAGANSIFY-GDKLLTTDNTK------ 319 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s-~g~~~l~~~~~~~~l~~GAn~~~~-~~~~~~~~g~~------ 319 (348)
|.+ . -.+++++.+..++..... +....+. .|+.. -.....++..|.|.=++ ++++.-..|..
T Consensus 175 ---G~~-~-g~~~~~~~l~~~l~~l~~---~~~w~v~~~g~~~--~~~~~~Ai~~GghvRVGlED~~~~~~G~~a~sNae 244 (272)
T PF05853_consen 175 ---GVP-G-GMPATPENLLAMLDMLPE---GAPWSVCGIGRNQ--WPLLAAAIAMGGHVRVGLEDNLYLPDGELAPSNAE 244 (272)
T ss_dssp ---S-T-T-S--S-HHHHHHHHHHHHH---TEEEEEEE-GGGH--HHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHH
T ss_pred ---cCC-C-CCCCCHHHHHHHHHhcCC---CCcEEEEccchhh--HHHHHHHHHcCCceEEecCccccCCCCCCCcCHHH
Confidence 433 2 225677777766665554 3322222 22222 23456678888885433 33332334432
Q ss_pred -chHHHHHHHHcCCCchh
Q psy8190 320 -TNDDSKLLKKLGINTRN 336 (348)
Q Consensus 320 -~~~~~~~i~~~G~~p~~ 336 (348)
.+...++++++|++|..
T Consensus 245 lV~~a~~ia~~~grevAt 262 (272)
T PF05853_consen 245 LVERAVRIARELGREVAT 262 (272)
T ss_dssp HHHHHHHHHHHTT-EB--
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 24678899999998764
No 216
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=95.82 E-value=1.5 Score=40.17 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=124.5
Q ss_pred cCHHHHHHHHHHHHhCC-----CCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDG-----ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G-----~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
.+.++=++.++.+.+.| ++.|-+. . ....+.+.+.++++.-. ....++.. .....+.++...++|++.+
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s---~~~~d~~~v~~~~~~~~-~~~~v~~~-~r~~~~die~A~~~g~~~v 91 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFF-L---YTEKDREAVEACLDRGY-KFPEVTGW-IRANKEDLKLVKEMGLKET 91 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEec-C---cChHHHHHHHHHHHcCC-CCCEEEEE-ecCCHHHHHHHHHcCcCEE
Confidence 38888889999999999 9998662 2 12233344444432110 02345444 4556777899999999999
Q ss_pred eccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCH-HHHHHHHHHHH----hcCCCCC-eee
Q psy8190 173 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGL-SESR-DQRAELIFQLA----NLNPYPE-SVP 242 (348)
Q Consensus 173 ~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~-e~~~~~l~~l~----~l~~~~~-~i~ 242 (348)
.+.+-+++... +.+++. ...+...+.++.+++.|+.+..++ -|. -.+. +.+++.+..+. +.+ .+ .+.
T Consensus 92 ~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~G--~~~~i~ 168 (279)
T cd07947 92 GILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKESG--IPVKIR 168 (279)
T ss_pred EEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHCC--CCEEEE
Confidence 99876675544 355543 356677788899999999877664 233 2222 11223333333 355 55 343
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCceeccccccc---cchhhHHHHHHhCccee---eeCCeecc
Q psy8190 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARIT--MPTSRIRMSAGRKE---MGETTQAFCFLAGANSI---FYGDKLLT 314 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~--lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~---~~~~~~~~ 314 (348)
+.=-+ --.||+.. ...+.+..+++...|.. +|...+.+- -|| +..-....++.+||+.+ +.|-- -.
T Consensus 169 l~DTv-G~a~P~~~--~~~p~~v~~l~~~l~~~~~~p~~~l~~H--~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlG-e~ 242 (279)
T cd07947 169 LCDTL-GYGVPYPG--ASLPRSVPKIIYGLRKDCGVPSENLEWH--GHNDFYKAVANAVAAWLYGASWVNCTLLGIG-ER 242 (279)
T ss_pred eccCC-CcCCcccc--ccchHHHHHHHHHHHHhcCCCCceEEEE--ecCCCChHHHHHHHHHHhCCCEEEEeccccc-cc
Confidence 22111 11233211 11246677777777665 444333221 122 22334556899999988 21110 01
Q ss_pred CCCCCchHHHHHHHHc-CCCc
Q psy8190 315 TDNTKTNDDSKLLKKL-GINT 334 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~-G~~p 334 (348)
+.+...++...+++.+ |+.+
T Consensus 243 aGN~~tE~lv~~l~~~~g~~t 263 (279)
T cd07947 243 TGNCPLEAMVIEYAQLKGNFD 263 (279)
T ss_pred ccchhHHHHHHHHHHhcCCCC
Confidence 2334457888888887 8764
No 217
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.81 E-value=1.9 Score=47.29 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=129.1
Q ss_pred cCHHHHHHHHHHHHhC--CCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEEe----------cCCCCHH
Q psy8190 98 LSIESVITAAQKAKSD--GATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCLT----------LGMLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~--G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~~----------~g~l~~e 159 (348)
++.++.+..+..+.+. |+..+-+.||.+. ....+++++..+-+.+....+...+. ++.+..+
T Consensus 552 ~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~ 631 (1146)
T PRK12999 552 VRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRA 631 (1146)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHH
Confidence 6789999999999998 9999877775211 11223445544444443322222221 4456667
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee------c--CCCHHHHHHHHHHH
Q psy8190 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG------L--SESRDQRAELIFQL 231 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G------l--get~e~~~~~l~~l 231 (348)
.++...++|++.+.+.. + -...+....+++.++++|......+-|= . ..+.+.+++..+.+
T Consensus 632 ~i~~a~~~Gid~~rifd-~----------lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 632 FVREAAAAGIDVFRIFD-S----------LNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred HHHHHHHcCCCEEEEec-c----------CChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHH
Confidence 78999999999887642 1 1234567788999999986433332222 1 25888888999999
Q ss_pred HhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeee
Q psy8190 232 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 232 ~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~ 308 (348)
.+++ .+.+.+ +.| ....+|.+..+++...|..+ +..|.+- .|+ +..-....|+.+||+.+-.
T Consensus 701 ~~~G--a~~i~i------kDt----~G~l~P~~~~~lv~~lk~~~-~ipi~~H--~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 701 EKAG--AHILAI------KDM----AGLLKPAAAYELVSALKEEV-DLPIHLH--THDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred HHcC--CCEEEE------CCc----cCCCCHHHHHHHHHHHHHHc-CCeEEEE--eCCCCchHHHHHHHHHHhCCCEEEe
Confidence 9888 665543 222 23467888889999888766 2223221 121 1223445689999999821
Q ss_pred CCe-ec-cCCCCCchHHHHHHHHcCCCc
Q psy8190 309 GDK-LL-TTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 309 ~~~-~~-~~~g~~~~~~~~~i~~~G~~p 334 (348)
-.. +. .+.++..+++...++..|+..
T Consensus 766 av~glg~~tgn~~le~vv~~L~~~~~~t 793 (1146)
T PRK12999 766 AVASMSGLTSQPSLNSIVAALEGTERDT 793 (1146)
T ss_pred cchhhcCCcCCHHHHHHHHHHHhcCCCC
Confidence 100 00 122333577888888888863
No 218
>PRK13753 dihydropteroate synthase; Provisional
Probab=95.74 E-value=0.99 Score=41.10 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc------cHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDR------DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~------~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+++.+++.++.+.+.|+.-|=++|..+.|... ..+++..+++.+++.+. .++..+...+.++.--++|++-
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGadi 99 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVGY 99 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCCE
Confidence 689999999999999999999888754434222 35567788888887544 3578888999999888999886
Q ss_pred eeccCCC--CHHHHh---c-------cC----CC-------CCHH--------HHHHHHHHHHHcCC---eeeEeEeeec
Q psy8190 172 YNHNLDT--SPKLYG---D-------II----ST-------RDYE--------NRLNTLKNVRNVGI---NICCGGIIGL 217 (348)
Q Consensus 172 i~~g~et--~~e~l~---~-------i~----~~-------~~~~--------~~~~~i~~~~~~G~---~i~~~~i~Gl 217 (348)
|+ .+.. .+++++ . ++ ++ ..++ ...+.++.+.++|+ ++..+-=+|+
T Consensus 100 IN-DVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF 178 (279)
T PRK13753 100 LN-DIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGF 178 (279)
T ss_pred EE-eCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCC
Confidence 65 2222 344432 1 11 10 0122 22344666778898 4666665666
Q ss_pred --CCCHHHHHHHHHHHHhc
Q psy8190 218 --SESRDQRAELIFQLANL 234 (348)
Q Consensus 218 --get~e~~~~~l~~l~~l 234 (348)
+.|.++=++.+..+.++
T Consensus 179 ~k~k~~~~n~~ll~~l~~l 197 (279)
T PRK13753 179 FLSPAPETSLHVLSNLQKL 197 (279)
T ss_pred CCCCChHHHHHHHHhHHHH
Confidence 34766655555554444
No 219
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=95.65 E-value=0.82 Score=41.25 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--c----cHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD--R----DLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~----~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++++.++...+.|+.-|=++|..+.|.. . ..+++..+++.+++. ++.+ +..+...+.++.--++|++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~pl--siDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPI--SVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCCHHHHHHHHHcCCC
Confidence 68999999999999999999888654332211 1 233577777888764 6554 5666777777777777877
Q ss_pred eee
Q psy8190 171 YYN 173 (348)
Q Consensus 171 ~i~ 173 (348)
-|+
T Consensus 98 iIN 100 (257)
T TIGR01496 98 IIN 100 (257)
T ss_pred EEE
Confidence 665
No 220
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.51 E-value=0.52 Score=42.53 Aligned_cols=135 Identities=16% Similarity=0.259 Sum_probs=84.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+.+++++.+.+..+.|+.-|=+++..+.|.. ...+++..+++.+++. ++. ++..+...+.++.--++|++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p--lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL--ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc--EEEeCCCHHHHHHHHHhCCC
Confidence 68999999999999999998888764332311 1234666677777764 444 47778888888877778877
Q ss_pred eee-ccCCC-CHHHHhcc----------CC---CCC----------HHH----HHHHHHHHHHcCC---eeeEeEeeecC
Q psy8190 171 YYN-HNLDT-SPKLYGDI----------IS---TRD----------YEN----RLNTLKNVRNVGI---NICCGGIIGLS 218 (348)
Q Consensus 171 ~i~-~g~et-~~e~l~~i----------~~---~~~----------~~~----~~~~i~~~~~~G~---~i~~~~i~Glg 218 (348)
-|+ ++.+. .+++++.+ +. +.+ .++ ..+.++.+.++|+ ++..+-.+|++
T Consensus 99 iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ 178 (257)
T cd00739 99 IINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFG 178 (257)
T ss_pred EEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcc
Confidence 666 44444 24454311 11 001 122 3455666778888 57777777786
Q ss_pred CCHHHHHHHHHHHHhc
Q psy8190 219 ESRDQRAELIFQLANL 234 (348)
Q Consensus 219 et~e~~~~~l~~l~~l 234 (348)
.+.++-.+.++.++.+
T Consensus 179 ks~~~~~~~l~~i~~l 194 (257)
T cd00739 179 KTPEHNLELLRRLDEL 194 (257)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6655545555444444
No 221
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.42 E-value=1.8 Score=38.53 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
+..+.++.+.+.|+..+++..-....... ..-.++++.+++ .++++.++.|..+.+.++.+.+.|++.+.+|-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~--~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~-- 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR--ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA-- 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh--
Confidence 44445556667899998776532111111 123466666665 4688999999999999999999999998876432
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEee-----------ec-CCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGII-----------GL-SESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~-----------Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
++ +++...+..+.+.+..+.+..++-. |- .++..+..+.+..+.+.+ .+.+.++....
T Consensus 104 --~~------~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G--~d~i~v~~i~~ 173 (243)
T cd04731 104 --VE------NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSMDR 173 (243)
T ss_pred --hh------ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC--CCEEEEeccCC
Confidence 11 2233333334333223444444332 22 345566667777777887 78887776443
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh-CcceeeeCCeeccCCCCCchHHHHHH
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGDKLLTTDNTKTNDDSKLL 327 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~-GAn~~~~~~~~~~~~g~~~~~~~~~i 327 (348)
.||. +.+. .+.++ ..+... +..+-+++|-.+ .+.....+.. ||+.++.|.-+ ...+-+..+..+.+
T Consensus 174 -~g~~----~g~~-~~~i~---~i~~~~-~~pvia~GGi~~--~~di~~~l~~~g~dgv~vg~al-~~~~~~~~~~~~~~ 240 (243)
T cd04731 174 -DGTK----KGYD-LELIR---AVSSAV-NIPVIASGGAGK--PEHFVEAFEEGGADAALAASIF-HFGEYTIAELKEYL 240 (243)
T ss_pred -CCCC----CCCC-HHHHH---HHHhhC-CCCEEEeCCCCC--HHHHHHHHHhCCCCEEEEeHHH-HcCCCCHHHHHHHH
Confidence 3331 1122 22222 222222 222333443222 2223334555 89999876532 22222344555555
Q ss_pred HH
Q psy8190 328 KK 329 (348)
Q Consensus 328 ~~ 329 (348)
++
T Consensus 241 ~~ 242 (243)
T cd04731 241 AE 242 (243)
T ss_pred hh
Confidence 43
No 222
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.31 E-value=1.9 Score=38.45 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--C
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 179 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et--~ 179 (348)
.++.++.+.+.|++++++.+-... . ..+.-.++++++.+ .++++.+-.|..+.|.++.+.++|++++.+|-.. +
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~-~--g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAA-F--GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEecccc-C--CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 344556667789999999875211 1 11223477777765 4688888999999999999999999999887655 2
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeecCCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy8190 180 PKLYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGLSESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 180 ~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++++..+ .+...+. +.++.++ +.|..++..+..+.++.+.+.+ ...+.++...
T Consensus 111 p~l~~~i------------~~~~~~~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G--~~~iiv~~~~ 169 (241)
T PRK14024 111 PEWCARV------------IAEHGDR-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG--CSRYVVTDVT 169 (241)
T ss_pred HHHHHHH------------HHHhhhh-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC--CCEEEEEeec
Confidence 4544432 3232221 2222222 2244234455666777777777 7777666544
No 223
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.98 E-value=1.9 Score=38.18 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCC-CHHHHHHHHHhCCCeeeccC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGML-NENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~g~ 176 (348)
++..+.++++.+.+.|++.|++---+.... .....=.++++.+++. ...+.++.-.. ..+.++.+.++|.+.+.+-+
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~~f~-~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~ 96 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDGHFV-PNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI 96 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcC-CccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEee
Confidence 335677788888888999988743211100 0111001566666653 22222232222 24678888999999996555
Q ss_pred C-CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy8190 177 D-TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 177 e-t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
+ .. .+...+.++.+++.|+.+...+ ...|+.+..+. +.+.+ .++.+.+.++.|..+ -.
T Consensus 97 ~q~~------------~d~~~~~~~~i~~~g~~iGls~---~~~t~~~~~~~---~~~~~-~~Dyi~~~~v~pg~~--~~ 155 (229)
T PLN02334 97 EQAS------------TIHLHRLIQQIKSAGMKAGVVL---NPGTPVEAVEP---VVEKG-LVDMVLVMSVEPGFG--GQ 155 (229)
T ss_pred cccc------------chhHHHHHHHHHHCCCeEEEEE---CCCCCHHHHHH---HHhcc-CCCEEEEEEEecCCC--cc
Confidence 4 11 1234567888888887543332 12354443332 22331 057887877765322 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. .....+..+..+|...++..|.+.+|- ..+.-.....+||+.++.|..+.
T Consensus 156 ~----~~~~~~~~i~~~~~~~~~~~I~a~GGI---~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 156 S----FIPSMMDKVRALRKKYPELDIEVDGGV---GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred c----cCHHHHHHHHHHHHhCCCCcEEEeCCC---CHHHHHHHHHcCCCEEEEChHHh
Confidence 1 112344444555655565445544432 23334457789999998886553
No 224
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.86 E-value=2.6 Score=37.31 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=110.8
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHH---HhCCCeeeccCCC-CH
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLK---KVGLDYYNHNLDT-SP 180 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk---~aG~~~i~~g~et-~~ 180 (348)
+.++.+.+.|-++|.+.. ..+.+++.+-+.++++ ...+.+|.+..+.+.+..+. +.+++.+.+++.- .+
T Consensus 33 ~a~~~~~~rgr~ef~~~~------e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~ 105 (231)
T TIGR00736 33 KASRDIEKRGRKEFSFNL------EEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQP 105 (231)
T ss_pred HHHHHHHHcCCcccCcCc------ccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcH
Confidence 344567788888874321 1245778888888864 45788898887776554443 2388999988877 45
Q ss_pred HHHhccCC---CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC
Q psy8190 181 KLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 257 (348)
Q Consensus 181 e~l~~i~~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~ 257 (348)
++.+.=.. .++++...+.++.+++.+.++++=+=.|. +.++..+..+.+.+.+ .+.+.+....| |.+.
T Consensus 106 ~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~aG--ad~i~Vd~~~~--g~~~--- 176 (231)
T TIGR00736 106 EITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDDG--FDGIHVDAMYP--GKPY--- 176 (231)
T ss_pred HHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHcC--CCEEEEeeCCC--CCch---
Confidence 55543221 24788888888888887877776655554 3345567777788888 88887754332 2211
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 258 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 258 ~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
-.++.+...+..+++..|-..+|-.+ .+-....+.+||+.++.+.
T Consensus 177 ------a~~~~I~~i~~~~~~ipIIgNGgI~s--~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 177 ------ADMDLLKILSEEFNDKIIIGNNSIDD--IESAKEMLKAGADFVSVAR 221 (231)
T ss_pred ------hhHHHHHHHHHhcCCCcEEEECCcCC--HHHHHHHHHhCCCeEEEcH
Confidence 22444444454443322222222111 2334446678999997753
No 225
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=94.78 E-value=0.75 Score=43.05 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEE--EeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFC--MGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~--l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG 168 (348)
..+++++.+.++...+.|+..|- +.|+...+ ...+.+.+..+++..++.++.+.++.. ....++.+.++|
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G 193 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAG 193 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcC
Confidence 35689999999998888988863 33321111 124678889999999988888877654 345567777889
Q ss_pred CCeeeccCCCCHHH
Q psy8190 169 LDYYNHNLDTSPKL 182 (348)
Q Consensus 169 ~~~i~~g~et~~e~ 182 (348)
++++.|+.-.+++.
T Consensus 194 ~~~i~H~~~~~~~~ 207 (342)
T cd01299 194 VDTIEHGFLIDDET 207 (342)
T ss_pred CCEEeecCCCCHHH
Confidence 98887765444433
No 226
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.69 E-value=2.1 Score=38.61 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------cccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~------~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++++.++...+.|+.-|=++++.+.|. ....+++..+++.+++. ++. ++..+...+.++.--++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p--iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP--ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe--EEEeCCcHHHHHHHHHhCCC
Confidence 6899999999999999999988887644332 12345677888888764 544 46777777888777777766
Q ss_pred eee
Q psy8190 171 YYN 173 (348)
Q Consensus 171 ~i~ 173 (348)
-|+
T Consensus 99 iIN 101 (258)
T cd00423 99 IIN 101 (258)
T ss_pred EEE
Confidence 554
No 227
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=94.68 E-value=4.1 Score=40.83 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCC-CCcccHHHHHHHHHHHHh-cCcEEEEecCCCCH-----------HHHHHHH
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKK-IGLETCLTLGMLNE-----------NQAYRLK 165 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~-~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~-----------e~l~~Lk 165 (348)
...+.++.++...+.|+++++|.+-.-. .+....+.+.++++++.+ .++++++-.|..+. |.++.+.
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH
Confidence 3455566777788899999988764211 112233457888888876 57888887776664 7799999
Q ss_pred HhCCCeeeccCCC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEe-------------------------------
Q psy8190 166 KVGLDYYNHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCG------------------------------- 212 (348)
Q Consensus 166 ~aG~~~i~~g~et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~------------------------------- 212 (348)
++|+++|.+|-.. .+|.|=.-+...+++-+.+..+..-+.-+-++.+
T Consensus 345 ~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (538)
T PLN02617 345 RSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAW 424 (538)
T ss_pred HcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceE
Confidence 9999999997544 2332222223334444444444431110212222
Q ss_pred ---Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc
Q psy8190 213 ---GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 288 (348)
Q Consensus 213 ---~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~ 288 (348)
.+.|- ..|.-+..+.++.+.+++ ...+-+.. +-..||.- .++. +.++.++-+ .+..+-+|+|--
T Consensus 425 ~~v~~~gg~~~~~~~~~~~~~~~~~~G--ageil~t~-id~DGt~~----G~d~-~l~~~v~~~----~~ipviasGG~g 492 (538)
T PLN02617 425 YQCTVKGGREGRPIGAYELAKAVEELG--AGEILLNC-IDCDGQGK----GFDI-ELVKLVSDA----VTIPVIASSGAG 492 (538)
T ss_pred EEEEEecCcccCCCCHHHHHHHHHhcC--CCEEEEee-cccccccc----CcCH-HHHHHHHhh----CCCCEEEECCCC
Confidence 12222 234445667777777777 55654433 33456542 2232 223322211 233344555543
Q ss_pred ccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCc
Q psy8190 289 EMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINT 334 (348)
Q Consensus 289 ~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p 334 (348)
++ .++....-..||+..+.+. +..-..-+..+..+.+++.|..+
T Consensus 493 ~~-~d~~~~~~~~~~~a~~aa~-~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 493 TP-EHFSDVFSKTNASAALAAG-IFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CH-HHHHHHHhcCCccEEEEEe-eeccCCCCHHHHHHHHHHCCCcc
Confidence 33 2333322236788876554 33445566788899999998654
No 228
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.18 Score=43.96 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
..-+.++.++...+.|+.++.|-.- +.+....+-+.+.+++..+ ..+++++-.|.-+.|.++.+..+|.|-++++--
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDI--tAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsa 105 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDI--TASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSA 105 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEec--ccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChh
Confidence 3445566777778889999887665 2334455778888888876 588999999999999999999999999998754
Q ss_pred C--CHHHHhccCCCCCHHHHHHHHHHHHH-cCCe-eeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 178 T--SPKLYGDIISTRDYENRLNTLKNVRN-VGIN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 178 t--~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~-i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
. +|++..++......+-++=+|..-+. -|-. -..-..+|= ..|.-+.++-...+.+++ .-.|-++. +-..||
T Consensus 106 Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G--AGEIlLts-mD~DGt 182 (256)
T COG0107 106 AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELG--AGEILLTS-MDRDGT 182 (256)
T ss_pred HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcC--CceEEEee-eccccc
Confidence 4 35554433221111111111111111 1210 001112333 334444455555556666 56665554 334666
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCce--eccccccccchhhHHHHHHhC-cceeeeCCeeccCCCCCchHHHHHHHH
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRI--RMSAGRKEMGETTQAFCFLAG-ANSIFYGDKLLTTDNTKTNDDSKLLKK 329 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i--~~s~g~~~l~~~~~~~~l~~G-An~~~~~~~~~~~~g~~~~~~~~~i~~ 329 (348)
.-. .+ +.++...+. ..+| -+|+|--+. +.-+.++..| |+..+.. ++..-..-+..+..+.+++
T Consensus 183 k~G----yD----l~l~~~v~~---~v~iPvIASGGaG~~--ehf~eaf~~~~adAaLAA-siFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 183 KAG----YD----LELTRAVRE---AVNIPVIASGGAGKP--EHFVEAFTEGKADAALAA-SIFHFGEITIGEVKEYLAE 248 (256)
T ss_pred ccC----cC----HHHHHHHHH---hCCCCEEecCCCCcH--HHHHHHHHhcCccHHHhh-hhhhcCcccHHHHHHHHHH
Confidence 532 11 122222222 2233 345544332 2234466555 6665332 2334455567889999999
Q ss_pred cCCCc
Q psy8190 330 LGINT 334 (348)
Q Consensus 330 ~G~~p 334 (348)
.|..+
T Consensus 249 ~gi~V 253 (256)
T COG0107 249 QGIEV 253 (256)
T ss_pred cCCCc
Confidence 99865
No 229
>PRK15452 putative protease; Provisional
Probab=94.52 E-value=0.88 Score=44.40 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHh
Q psy8190 156 LNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLAN 233 (348)
Q Consensus 156 l~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~ 233 (348)
-+.+.++...++|+|.|.+|.+. +-+.. ....+.++..++++.+|+.|.++...+-.=. .+..+.+.+.+..+.+
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 35677888889999999999987 43332 2355789999999999999988765533222 3445667777788888
Q ss_pred cCCCCCeeecc
Q psy8190 234 LNPYPESVPIN 244 (348)
Q Consensus 234 l~~~~~~i~~~ 244 (348)
++ ++.+-+.
T Consensus 88 ~g--vDgvIV~ 96 (443)
T PRK15452 88 MK--PDALIMS 96 (443)
T ss_pred CC--CCEEEEc
Confidence 87 7776554
No 230
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=94.50 E-value=2.7 Score=37.01 Aligned_cols=184 Identities=15% Similarity=0.068 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
+..+.++.+.+.|++.+++.+-... ......-.++++.+++ .++++.+..|..+.+.++.+.++|++.+-++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~-- 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA-- 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH--
Confidence 4455556666789999988753111 1111223455555655 3678888899999999999999999998776543
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe------eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGI------IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i------~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+. +++...+..+...+.-+.++.++- .|. ..+..+..+.++.+.+.+ .+.+.+..... .|+.
T Consensus 106 --l~------dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--a~~iii~~~~~-~g~~ 174 (234)
T cd04732 106 --VK------NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG--VKAIIYTDISR-DGTL 174 (234)
T ss_pred --Hh------ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC--CCEEEEEeecC-CCcc
Confidence 11 122222222222111122233221 122 223445556667777777 77776654332 3332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
..++.+ ++...+...+ ..+-+++|-.+ .+.-..++..||+.++.|.-
T Consensus 175 ----~g~~~~----~i~~i~~~~~-ipvi~~GGi~~--~~di~~~~~~Ga~gv~vg~~ 221 (234)
T cd04732 175 ----SGPNFE----LYKELAAATG-IPVIASGGVSS--LDDIKALKELGVAGVIVGKA 221 (234)
T ss_pred ----CCCCHH----HHHHHHHhcC-CCEEEecCCCC--HHHHHHHHHCCCCEEEEeHH
Confidence 223322 2222222222 12333333222 12233456789999987653
No 231
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=94.43 E-value=2 Score=41.10 Aligned_cols=165 Identities=12% Similarity=0.141 Sum_probs=88.4
Q ss_pred HHHHHHHHhcC--cEEEEecCCCCHH--HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeE
Q psy8190 136 ENMICEVKKIG--LETCLTLGMLNEN--QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 136 ~~l~~~i~~~~--~~i~~~~g~l~~e--~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
.++++.+++.+ ..+.+.....+.+ ..+.+.++|++.+.+..++. .+...++++.+++.|+.+..
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------------~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------------ISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------------HHHHHHHHHHHHHcCCEEEE
Confidence 45566666542 3344444333332 25677788888887655442 33455678999999987766
Q ss_pred eEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc
Q psy8190 212 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG 291 (348)
Q Consensus 212 ~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~ 291 (348)
+ +++. +|+.+.++.+ ..+ ++.+-++.-+. |++. . + .. +-+...|....+..|.+.+|- +
T Consensus 282 D-~lnp-~tp~e~i~~l----~~~--vD~Vllht~vd-p~~~----~-~-~~---~kI~~ikk~~~~~~I~VdGGI---~ 340 (391)
T PRK13307 282 D-MLNV-EDPVKLLESL----KVK--PDVVELHRGID-EEGT----E-H-AW---GNIKEIKKAGGKILVAVAGGV---R 340 (391)
T ss_pred E-EcCC-CCHHHHHHHh----hCC--CCEEEEccccC-CCcc----c-c-hH---HHHHHHHHhCCCCcEEEECCc---C
Confidence 5 3333 4554444333 334 78887775332 2211 1 1 11 233444444445456666542 2
Q ss_pred hhhHHHHHHhCcceeeeCCeeccCCCCCch-HHHHHHHHcCCCch
Q psy8190 292 ETTQAFCFLAGANSIFYGDKLLTTDNTKTN-DDSKLLKKLGINTR 335 (348)
Q Consensus 292 ~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~-~~~~~i~~~G~~p~ 335 (348)
.+.-..++.+||+.++.|..+. .+. .+. ...++.+.++..+.
T Consensus 341 ~eti~~l~~aGADivVVGsaIf-~a~-Dp~~aak~l~~~i~~~~~ 383 (391)
T PRK13307 341 VENVEEALKAGADILVVGRAIT-KSK-DVRRAAEDFLNKLKPDID 383 (391)
T ss_pred HHHHHHHHHcCCCEEEEeHHHh-CCC-CHHHHHHHHHHhhccCch
Confidence 3334567889999998887553 222 233 33444444444443
No 232
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.41 E-value=3.9 Score=37.36 Aligned_cols=173 Identities=17% Similarity=0.064 Sum_probs=97.0
Q ss_pred ccHHHHHHHHHHHHh--cCcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHH
Q psy8190 130 RDLDNIENMICEVKK--IGLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNV 202 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~--~~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~ 202 (348)
...+.+.+.++..++ .+..+.++.+..+.+ .++.+.++|++.|.+++.+ .....+. -.++.+...+.++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv~~v 157 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLLKAV 157 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHHHHH
Confidence 345666666655554 356677776554443 4667777899999888765 2111111 124667777778887
Q ss_pred HHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc-----------cCCCCCCCCC-CCCHHHHHHHH
Q psy8190 203 RNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ-----------IKGTPLYGSS-ILDPLEFIRTI 269 (348)
Q Consensus 203 ~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P-----------~~gT~l~~~~-~~~~~~~~~~~ 269 (348)
++. ++++.+-+- .+.+.++..+.++.+.+.+ .+.+.+....+ ...++..... .+.....++.+
T Consensus 158 r~~~~~pv~vKl~--~~~~~~~~~~~a~~l~~~G--ad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v 233 (289)
T cd02810 158 KAAVDIPLLVKLS--PYFDLEDIVELAKAAERAG--ADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWV 233 (289)
T ss_pred HHccCCCEEEEeC--CCCCHHHHHHHHHHHHHcC--CCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHH
Confidence 774 444433322 2457778888889898888 78877643221 0011111111 11112235566
Q ss_pred HHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 270 AVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 270 a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
...|..++ +..|-..+|-.+ .+.....+.+||+.++.+.
T Consensus 234 ~~i~~~~~~~ipiia~GGI~~--~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 234 ARLAARLQLDIPIIGVGGIDS--GEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHHHhcCCCCCEEEECCCCC--HHHHHHHHHcCccHheEcH
Confidence 66666665 433433443222 3445556789999997664
No 233
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.32 E-value=3.2 Score=36.88 Aligned_cols=184 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
.++.++.+.+.|++.+++..-.. .........+.++.+.+ .++++.++.|.-+.+.++.+.++|++++.+|-..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~--~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~--- 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDG--AFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA--- 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechh--hhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH---
Confidence 34445556678999998876421 11111233344444433 5788888899999999999999999999886543
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 182 LYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
++ +.+...+..+....-.+-++.+. +-|. .++..+..+..+.+.+.+ .+.+.+....+ .|+.
T Consensus 109 -~~------~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G--~~~i~~~~~~~-~g~~- 177 (241)
T PRK13585 109 -VE------NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELG--AGSILFTNVDV-EGLL- 177 (241)
T ss_pred -hh------ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcC--CCEEEEEeecC-CCCc-
Confidence 11 11222222222211112222221 2244 233225566666667776 66665444321 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
..++.+ ++...+... +..+-+++|-.+. .+... ...+||+.++.|.-+
T Consensus 178 ---~g~~~~----~i~~i~~~~-~iPvia~GGI~~~-~di~~-~~~~Ga~gv~vgsa~ 225 (241)
T PRK13585 178 ---EGVNTE----PVKELVDSV-DIPVIASGGVTTL-DDLRA-LKEAGAAGVVVGSAL 225 (241)
T ss_pred ---CCCCHH----HHHHHHHhC-CCCEEEeCCCCCH-HHHHH-HHHcCCCEEEEEHHH
Confidence 222322 222222222 2234444442222 23333 577999999776533
No 234
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.23 E-value=3.5 Score=36.01 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=99.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.+.+...+.++.+.+.|+..+++.+-... ..... +.++.+++ .++++-+-.+..+++.++.+.++|++.+.++.
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~-~~g~~----~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKY-FQGSL----EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccc-cCCCH----HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 44556677777788889999988764221 11223 23333433 25566554456777899999999999998755
Q ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy8190 177 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 177 et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.. ...+...+.++.++..|+.+... . .+.++ +..+.+++ ++.+.+. +..++.+
T Consensus 103 ~~-----------~~~~~~~~~~~~~~~~g~~~~v~----v-~~~~e----~~~~~~~g--~~~i~~t---~~~~~~~-- 155 (217)
T cd00331 103 AA-----------LDDEQLKELYELARELGMEVLVE----V-HDEEE----LERALALG--AKIIGIN---NRDLKTF-- 155 (217)
T ss_pred cc-----------CCHHHHHHHHHHHHHcCCeEEEE----E-CCHHH----HHHHHHcC--CCEEEEe---CCCcccc--
Confidence 32 12245556666777788876222 2 24444 44455666 7777655 3333332
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 257 SSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.++. ..+...+..+| +..+-+.+|-.+ .+.-...+.+||+.++.|.-+
T Consensus 156 --~~~~----~~~~~l~~~~~~~~pvia~gGI~s--~edi~~~~~~Ga~gvivGsai 204 (217)
T cd00331 156 --EVDL----NTTERLAPLIPKDVILVSESGIST--PEDVKRLAEAGADAVLIGESL 204 (217)
T ss_pred --CcCH----HHHHHHHHhCCCCCEEEEEcCCCC--HHHHHHHHHcCCCEEEECHHH
Confidence 2232 23333333454 322323333222 233445678899999888654
No 235
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=94.21 E-value=3.6 Score=36.19 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=95.7
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
..+.++.+.+.|++.+++.+-...... ...-.++++.+.+ .++++.+..|..+.+.++.+.++|++.+-++-..
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g--~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~--- 104 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEG--GPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAA--- 104 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccC--CCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHH---
Confidence 344455567889999988764211111 1112344455544 3678888889999999999999999998776432
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeEe------eec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 182 LYGDIISTRDYENRLNTLKNVRNVG---INICCGGI------IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~i------~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
++ +.+...+. +++.| +-++.++- .|. ..+..+..+.++.+.+.+ .+.+.+..... .|
T Consensus 105 -l~------d~~~~~~~---~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g--~~~ii~~~~~~-~g 171 (230)
T TIGR00007 105 -VE------NPDLVKEL---LKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG--LEGIIYTDISR-DG 171 (230)
T ss_pred -hh------CHHHHHHH---HHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC--CCEEEEEeecC-CC
Confidence 11 12233333 33344 23333432 233 222234556667777777 67666554432 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+. ..++. +++...+.. .+..+-+++|-.+. .+.. .++..||+.++.|.
T Consensus 172 ~~----~g~~~----~~i~~i~~~-~~ipvia~GGi~~~-~di~-~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 172 TL----SGPNF----ELTKELVKA-VNVPVIASGGVSSI-DDLI-ALKKLGVYGVIVGK 219 (230)
T ss_pred Cc----CCCCH----HHHHHHHHh-CCCCEEEeCCCCCH-HHHH-HHHHCCCCEEEEeH
Confidence 32 12332 222223322 23334444443222 2333 35679999997764
No 236
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=94.20 E-value=1.3 Score=43.72 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
+++.+.++...+.|+.-|-++++.+. ...+.+..+++.+++. ++. ++..+.+.+.++.--++|.+-|+ ++..
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~---p~~~~v~~~V~~l~~~~~~p--ISIDT~~~~v~eaAL~aGAdiIN-sVs~~ 238 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD---DDPDVVKEKVKTALDALDSP--VIADTPTLDELYEALKAGASGVI-MPDVE 238 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC---CcHHHHHHHHHHHHhhCCCc--EEEeCCCHHHHHHHHHcCCCEEE-ECCcc
Confidence 88999999999999999988876332 2456788899888874 444 57888999999999999998776 4433
Q ss_pred C-HHHHhc----------cCC--CCCHHHHHHHHHHHHHcCC-eeeEeEeeecCCCHHHHHHHHHHHHh
Q psy8190 179 S-PKLYGD----------IIS--TRDYENRLNTLKNVRNVGI-NICCGGIIGLSESRDQRAELIFQLAN 233 (348)
Q Consensus 179 ~-~e~l~~----------i~~--~~~~~~~~~~i~~~~~~G~-~i~~~~i~Glget~e~~~~~l~~l~~ 233 (348)
. +++++. ++. ...++...+.++.+.++|+ ++..+-++|. ....+.+++..++.
T Consensus 239 ~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~--~~~~l~~sL~~l~~ 305 (499)
T TIGR00284 239 NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP--PLLGLLESIIRFRR 305 (499)
T ss_pred chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc--chHHHHHHHHHHHH
Confidence 2 555431 111 2245777788999999999 6777777765 22346666666653
No 237
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=94.04 E-value=4 Score=36.39 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc-CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCee
Q psy8190 131 DLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN-LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g-~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i 209 (348)
+.+++.++.+..++.|+.+.+++ .+.+.++.|.+.|+..+-++ -+. ..+..++.+.+.|.++
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KIaS~dl---------------~n~~lL~~~A~tgkPv 116 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKIASGDL---------------TNLPLLEYIAKTGKPV 116 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE-GGGT---------------T-HHHHHHHHTT-S-E
T ss_pred CHHHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEeccccc---------------cCHHHHHHHHHhCCcE
Confidence 45788888888888899887665 68888999999999887753 211 1334566666677764
Q ss_pred eEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc
Q psy8190 210 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 288 (348)
Q Consensus 210 ~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~ 288 (348)
|+.- +-|.+++.+.+..+++-+. .+.+-++...-+| || ..+--++.+...|..++ ..|-+| -|
T Consensus 117 ----IlSTG~stl~EI~~Av~~~~~~~~-~~l~llHC~s~YP-~~-------~e~~NL~~i~~L~~~f~-~~vG~S--DH 180 (241)
T PF03102_consen 117 ----ILSTGMSTLEEIERAVEVLREAGN-EDLVLLHCVSSYP-TP-------PEDVNLRVIPTLKERFG-VPVGYS--DH 180 (241)
T ss_dssp ----EEE-TT--HHHHHHHHHHHHHHCT---EEEEEE-SSSS----------GGG--TTHHHHHHHHST-SEEEEE--E-
T ss_pred ----EEECCCCCHHHHHHHHHHHHhcCC-CCEEEEecCCCCC-CC-------hHHcChHHHHHHHHhcC-CCEEeC--CC
Confidence 3434 5688999999999965551 3333333332222 23 23344667778888888 444444 36
Q ss_pred ccchhhHHHHHHhCccee
Q psy8190 289 EMGETTQAFCFLAGANSI 306 (348)
Q Consensus 289 ~l~~~~~~~~l~~GAn~~ 306 (348)
..+......++..||..|
T Consensus 181 t~g~~~~~~AvalGA~vI 198 (241)
T PF03102_consen 181 TDGIEAPIAAVALGARVI 198 (241)
T ss_dssp SSSSHHHHHHHHTT-SEE
T ss_pred CCCcHHHHHHHHcCCeEE
Confidence 666667788999999998
No 238
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=2.4 Score=39.99 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=89.6
Q ss_pred CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhc
Q psy8190 157 NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANL 234 (348)
Q Consensus 157 ~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l 234 (348)
+-+.++..-++|+|.|.+|... +-+.+. ...+.+++.+.++.+|++|.++.+.+=.-+ ....+.+.+.++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 4466777778899999999763 222211 357899999999999999997554433333 56667788999999999
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeecc
Q psy8190 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 314 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~ 314 (348)
+ +|.+.+.=. -++.+++...|+..+.+|+--...+.......-..|+..++..
T Consensus 92 G--vDaviv~Dp--------------------g~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~----- 144 (347)
T COG0826 92 G--VDAVIVADP--------------------GLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLP----- 144 (347)
T ss_pred C--CCEEEEcCH--------------------HHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeC-----
Confidence 8 777654321 2556667777776555442111111233344455676666432
Q ss_pred CCCCCchHHHHHHHHc
Q psy8190 315 TDNTKTNDDSKLLKKL 330 (348)
Q Consensus 315 ~~g~~~~~~~~~i~~~ 330 (348)
..-+.+++.++.++.
T Consensus 145 -rEls~~ei~~i~~~~ 159 (347)
T COG0826 145 -RELSLEEIKEIKEQT 159 (347)
T ss_pred -ccCCHHHHHHHHHhC
Confidence 122345666666665
No 239
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=93.86 E-value=4.3 Score=35.76 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
...+.++.+.+.|++.+++.+-...... ...-.++++.+.+ .++++.+..|..+.+.++.+.++|++.+.+|-..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~-- 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA-- 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH--
Confidence 3344455666789999988773111111 1123455555544 4678888899999999999999999999877644
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
++ +.+...+..+...+ .+.++.++ +.|. ..+..+..+..+.+.+++ ++.+.++... ..||.
T Consensus 107 --l~------~~~~l~ei~~~~~~-~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g--~~~ii~~~~~-~~g~~ 174 (233)
T PRK00748 107 --VK------NPELVKEACKKFPG-KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAG--VKAIIYTDIS-RDGTL 174 (233)
T ss_pred --Hh------CHHHHHHHHHHhCC-CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcC--CCEEEEeeec-CcCCc
Confidence 11 11222233333222 13333332 1233 233444566677777777 6665555433 12332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhC-cceeeeCC
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAG-ANSIFYGD 310 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~G-An~~~~~~ 310 (348)
. .++.+.+.++ +...+ ..+-+++|-.+. .+ -...+..| |+.++.|.
T Consensus 175 ~----G~d~~~i~~l----~~~~~-ipvia~GGi~~~-~d-i~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 175 S----GPNVEATREL----AAAVP-IPVIASGGVSSL-DD-IKALKGLGAVEGVIVGR 221 (233)
T ss_pred C----CCCHHHHHHH----HHhCC-CCEEEeCCCCCH-HH-HHHHHHcCCccEEEEEH
Confidence 1 2333322222 22233 223334432222 22 33456667 99998765
No 240
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.84 E-value=5.3 Score=36.70 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHh-cCcEEEEecCCCCH----HHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHc
Q psy8190 132 LDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV 205 (348)
Q Consensus 132 ~~~~~~l~~~i~~-~~~~i~~~~g~l~~----e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~ 205 (348)
.+.+.+.++..++ .+..+.++....+. +.++.+.++|+|.|.+++-+ ..... .-.-..+.+...+.++.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 74 VEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhc
Confidence 3455554444443 45566666543333 34566777899999888765 21100 000124677778888888886
Q ss_pred -CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc------cCCCC-----CCCC-CCCCHHHHHHHHHHH
Q psy8190 206 -GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ------IKGTP-----LYGS-SILDPLEFIRTIAVA 272 (348)
Q Consensus 206 -G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P------~~gT~-----l~~~-~~~~~~~~~~~~a~~ 272 (348)
++++.+-+ +. +.++..+.++.+.+.+ .+.+.+..... ....| .... .+......++.+...
T Consensus 153 ~~~Pv~vKl--~~--~~~~~~~~a~~~~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i 226 (296)
T cd04740 153 TDVPVIVKL--TP--NVTDIVEIARAAEEAG--ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQV 226 (296)
T ss_pred cCCCEEEEe--CC--CchhHHHHHHHHHHcC--CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHH
Confidence 66554442 22 3346677777788887 77665432111 11111 1111 111111234444444
Q ss_pred HHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCch
Q psy8190 273 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINTR 335 (348)
Q Consensus 273 R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p~ 335 (348)
+..+ +..|-..+|-.+ .+.....+.+||+.++.+.-+. . ++.. ++..+.+++.||.-+
T Consensus 227 ~~~~-~ipii~~GGI~~--~~da~~~l~~GAd~V~igra~l-~-~p~~~~~i~~~l~~~~~~~g~~~~ 289 (296)
T cd04740 227 YKAV-EIPIIGVGGIAS--GEDALEFLMAGASAVQVGTANF-V-DPEAFKEIIEGLEAYLDEEGIKSI 289 (296)
T ss_pred HHhc-CCCEEEECCCCC--HHHHHHHHHcCCCEEEEchhhh-c-ChHHHHHHHHHHHHHHHHcCCCCH
Confidence 4433 222323333222 3445567789999997664332 2 4331 456778888998644
No 241
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.83 E-value=2.8 Score=36.42 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=70.0
Q ss_pred hcCCCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHH
Q psy8190 56 YFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNI 135 (348)
Q Consensus 56 ~~~g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~ 135 (348)
.+ |..+-..+.+-+ .++| ......+. ..-+..+++++...+..+...|++.+++..+.......+
T Consensus 100 ~~-~~e~ip~gYiv~-~~~~-------~v~~v~~a--~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---- 164 (205)
T TIGR01769 100 KL-NLEVIPMAYLIV-GPGG-------AVGYVGKA--REIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---- 164 (205)
T ss_pred Hc-CCcccceEEEEE-CCCC-------ceeeecCc--ccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC----
Confidence 35 566666666666 4454 22221111 122237899999999888888999999976421222223
Q ss_pred HHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 136 ENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 136 ~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++++.+++ .++++.+-.|..+.|.++.+.++|+|++-+|
T Consensus 165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 455566655 3678888899999999999999999998654
No 242
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.82 E-value=4.7 Score=36.12 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.++. +.+.+.|++.+++.+-..... ....-.++++.+.+ .++++.+..|..+.+.++.+.+.|++.+.+|-.
T Consensus 31 d~~~~a---~~~~~~G~~~i~i~dl~~~~~--~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 31 DPVELA---KRYNEEGADELVFLDITASSE--GRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred CHHHHH---HHHHHcCCCEEEEEeCCcccc--cCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 444444 445578999999887521111 11344566666665 468889999999999999999999999987643
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe-----------e-ec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 178 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI-----------I-GL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i-----------~-Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
. ++ +++...+..+...+-.+.++.++- . |- ..+..+..+.+..+.+.+ .+.+.+.
T Consensus 106 ~----l~------~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~ii~~ 173 (253)
T PRK02083 106 A----VA------NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLT 173 (253)
T ss_pred H----hh------CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC--CCEEEEc
Confidence 2 11 112222222221111122333321 1 11 122334455556666676 6666554
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHH-hCcceeeeCCeeccCCCCCchHH
Q psy8190 245 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL-AGANSIFYGDKLLTTDNTKTNDD 323 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~-~GAn~~~~~~~~~~~~g~~~~~~ 323 (348)
.... .||. . .++ +.++..++...+ ..+-+++|-.+. .+.. .++. .||+.++.|.-+ ....-+.++.
T Consensus 174 ~i~~-~g~~-~---g~d----~~~i~~~~~~~~-ipvia~GGv~s~-~d~~-~~~~~~G~~gvivg~al-~~~~~~~~~~ 240 (253)
T PRK02083 174 SMDR-DGTK-N---GYD----LELTRAVSDAVN-VPVIASGGAGNL-EHFV-EAFTEGGADAALAASIF-HFGEITIGEL 240 (253)
T ss_pred CCcC-CCCC-C---CcC----HHHHHHHHhhCC-CCEEEECCCCCH-HHHH-HHHHhCCccEEeEhHHH-HcCCCCHHHH
Confidence 4321 2332 1 122 233333333333 233344433222 2222 3454 599999877533 2334456777
Q ss_pred HHHHHHcCCCc
Q psy8190 324 SKLLKKLGINT 334 (348)
Q Consensus 324 ~~~i~~~G~~p 334 (348)
.+.+++.|+.+
T Consensus 241 ~~~~~~~~~~~ 251 (253)
T PRK02083 241 KAYLAEQGIPV 251 (253)
T ss_pred HHHHHHCCCcc
Confidence 88888888764
No 243
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=93.71 E-value=3.1 Score=36.86 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC---------CHHHHHHHHHhCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML---------NENQAYRLKKVGL 169 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l---------~~e~l~~Lk~aG~ 169 (348)
++..+.+.++.+..+ +..+-|++|. ....+.+.+.+.++..++.++.++.- |++ -++.++..++.|+
T Consensus 10 ~~~~~~d~Le~~g~y-ID~lKfg~Gt--~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf 85 (237)
T TIGR03849 10 PPKFVEDYLKVCGDY-ITFVKFGWGT--SALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGF 85 (237)
T ss_pred CHHHHHHHHHHhhhh-eeeEEecCce--EeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCC
Confidence 455555444433332 6777887773 23345567888888888888887532 222 2355669999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--C-----CCHHHHHHHHHHHHhcCCCCCeee
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--S-----ESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--g-----et~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.|.++-.+. ..+.+++.+.++.+++.|+.+-+- +|. . .+.+++++.++...+.+ .+.|-
T Consensus 86 ~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG--A~~Vi 152 (237)
T TIGR03849 86 EAVEISDGSM---------EISLEERCNLIERAKDNGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG--ADYVI 152 (237)
T ss_pred CEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC--CcEEE
Confidence 9998876551 247789999999999999976543 333 1 45677777777666676 55554
Q ss_pred c
Q psy8190 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 153 i 153 (237)
T TIGR03849 153 I 153 (237)
T ss_pred E
Confidence 3
No 244
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=93.63 E-value=4.8 Score=35.53 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=95.7
Q ss_pred HHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
++.++.+.+.|++.+++..-.. .....+. ++++.+.+ .+.++.+..|.-+.+.++.+.++|++.+-+|-..
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~-- 106 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA-- 106 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH--
Confidence 3444556678999988765311 1122333 44444443 4678888899999999999999999999877433
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-------------CCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy8190 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------------SESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-------------get~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++ +++...+..+...+.-+.++.++--|+ .++..+..+.+..+.+.+ .+.+.++...
T Consensus 107 --l~------~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~i~~i~ 176 (232)
T TIGR03572 107 --LE------NPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLG--AGEILLNSID 176 (232)
T ss_pred --hc------CHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcC--CCEEEEeCCC
Confidence 11 122222223222111133444432221 123344566777777777 7888777644
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+ .|| .+.+. ++++...+...+ ..+-+++|-.+. .+........||+.++.|.
T Consensus 177 ~-~g~----~~g~~----~~~~~~i~~~~~-ipvia~GGi~s~-~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 177 R-DGT----MKGYD----LELIKTVSDAVS-IPVIALGGAGSL-DDLVEVALEAGASAVAAAS 228 (232)
T ss_pred c-cCC----cCCCC----HHHHHHHHhhCC-CCEEEECCCCCH-HHHHHHHHHcCCCEEEEeh
Confidence 3 233 12222 233333333222 223344433222 3333335668999997764
No 245
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.33 E-value=1 Score=44.32 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecC-CCCHHHHHHHHHhCCCeeeccCC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLG-MLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+++.+.++.+.+.|++.|.+... +. ....+.++++.|++. ++.+.+ | ..+.+..+.|.++|++.|.+|+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a--~g---~~~~~~~~i~~i~~~~~~~~vi~--g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA--HG---HQVKMISAIKAVRALDLGVPIVA--GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC--CC---CcHHHHHHHHHHHHHCCCCeEEE--eccCCHHHHHHHHHhCCCEEEECCc
Confidence 46667777888889999988654 21 227899999999985 455543 6 78999999999999999998776
Q ss_pred C-CH---HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 178 T-SP---KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 178 t-~~---e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
. +- +.+..++. ....-.+++.+.+++.|+++.++ |=-.+..|+.+.+. ++ .+.+-+..+
T Consensus 297 ~Gs~~ttr~~~~~g~-~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala----~G--A~~vm~g~~ 359 (475)
T TIGR01303 297 PGAMCTTRMMTGVGR-PQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA----AG--ASNVMVGSW 359 (475)
T ss_pred CCccccCccccCCCC-chHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH----cC--CCEEeechh
Confidence 5 32 22222222 25677788888888888765443 22356777766653 55 555554443
No 246
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=93.19 E-value=5.1 Score=34.57 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh----cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~----~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.+.++.+.+.|+..|.+--.+ . +...+.+.++.+++ .++++.++ +.++.+.++|++.+.++.+
T Consensus 22 ~~~~~~~~~~~~gv~~v~lr~~~--~---~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~~ 90 (212)
T PRK00043 22 DLLEVVEAALEGGVTLVQLREKG--L---DTRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQD 90 (212)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCC--C---CHHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCcc
Confidence 45556667777899988775431 1 22344445555443 35666443 5688899999999887543
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCC
Q psy8190 178 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 256 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~ 256 (348)
.. . ...++..++.|. ++|. -.|.++..+. .+.+ ++.+.+.++.|....+-.
T Consensus 91 ~~-----------~----~~~~~~~~~~~~------~~g~~~~t~~e~~~a----~~~g--aD~v~~~~~~~~~~~~~~- 142 (212)
T PRK00043 91 DL-----------P----VADARALLGPDA------IIGLSTHTLEEAAAA----LAAG--ADYVGVGPIFPTPTKKDA- 142 (212)
T ss_pred cC-----------C----HHHHHHHcCCCC------EEEEeCCCHHHHHHH----hHcC--CCEEEECCccCCCCCCCC-
Confidence 21 0 112233333343 3444 4566654333 3566 899998887765432211
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 257 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 257 ~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.+.... +.+...+..+++..|-+.+|- ..+.-...+.+||+.+..|..+
T Consensus 143 ~~~~g~----~~~~~~~~~~~~~~v~a~GGI---~~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 143 KAPQGL----EGLREIRAAVGDIPIVAIGGI---TPENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred CCCCCH----HHHHHHHHhcCCCCEEEECCc---CHHHHHHHHHcCCCEEEEeHHh
Confidence 111122 222333334454444444432 2344456788999999877655
No 247
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.16 E-value=5.1 Score=34.50 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=94.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEe--ccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCC-CHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMG--AAWRELKDRDLDNIENMICEVKKI-GLETCLTLGML-NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~--gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l-~~e~l~~Lk~aG~~~i~ 173 (348)
.+++.+.+.++.+.+.|++.+.|. +|...+ ....-.++++.+++. ...+.+..... ..+.++.++++|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 456778888888889999999884 221111 112344666666652 33332222111 34678899999999977
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..+. .++..+.++.+++.|+.+.. .+. -+|..+..+.+ ... ++.+.+.++.| |+.
T Consensus 85 vh~~~-------------~~~~~~~~~~~~~~g~~~~~--~~~-~~t~~e~~~~~---~~~---~d~i~~~~~~~--g~t 140 (210)
T TIGR01163 85 VHPEA-------------SEHIHRLLQLIKDLGAKAGI--VLN-PATPLEFLEYV---LPD---VDLVLLMSVNP--GFG 140 (210)
T ss_pred EccCC-------------chhHHHHHHHHHHcCCcEEE--EEC-CCCCHHHHHHH---Hhh---CCEEEEEEEcC--CCC
Confidence 53321 13445666888888876522 222 33444433332 222 45655554433 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
-... . ...++.+...|.+.++ ..+-+.+| +..+.-...+..||+.++.|..+
T Consensus 141 g~~~---~-~~~~~~i~~i~~~~~~~~~~~~i~v~GG---I~~env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 141 GQKF---I-PDTLEKIREVRKMIDENGLSILIEVDGG---VNDDNARELAEAGADILVAGSAI 196 (210)
T ss_pred cccc---c-HHHHHHHHHHHHHHHhcCCCceEEEECC---cCHHHHHHHHHcCCCEEEEChHH
Confidence 1111 1 1222333444433332 12333333 22333445678999999888655
No 248
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=93.03 E-value=7.1 Score=35.78 Aligned_cols=222 Identities=16% Similarity=0.103 Sum_probs=128.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----CcEEEEecCCCCHHHHHHHHHh--CC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNENQAYRLKKV--GL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~~i~~~~g~l~~e~l~~Lk~a--G~ 169 (348)
.++.++=++.++.+.+.|++.|-++ . |... +.-.+.++.+.+. +..+. .......+.++.-.++ |+
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~g-f---P~~~--~~e~e~~~~i~~~~~~~~~~~~~-al~r~~~~die~a~~~~~~~ 91 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVG-F---PSAS--QTDFDFVRELIEEDLIPDDVTIQ-VLTQAREDLIERTFEALRGA 91 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-C---CCCC--HHHHHHHHHHHHccCCCCCCEEE-EEcCCChhhHHHHHHHhCCC
Confidence 4789999999999999999998774 2 3222 2223555555333 33332 2233344556777776 66
Q ss_pred C--eeeccCCCCHHHH-hccCCC--CCHHHHHHHHHHHHHcCCe---eeEeEeeec-C---CCHHHHHHHHHHHHhcC-C
Q psy8190 170 D--YYNHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGIN---ICCGGIIGL-S---ESRDQRAELIFQLANLN-P 236 (348)
Q Consensus 170 ~--~i~~g~et~~e~l-~~i~~~--~~~~~~~~~i~~~~~~G~~---i~~~~i~Gl-g---et~e~~~~~l~~l~~l~-~ 236 (348)
+ .+.+.+-+++... +.++++ ...+...+.++.+++.|+. ...+..|+. . -.++.+.+.++.+.+.. .
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~ 171 (284)
T cd07942 92 KKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQP 171 (284)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcC
Confidence 5 5777776665443 345543 2456667788889998875 223445554 1 23566667777766651 0
Q ss_pred CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---eC
Q psy8190 237 YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---YG 309 (348)
Q Consensus 237 ~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~~ 309 (348)
.++.+. . +-.+.|- ...+|.++.+++...+..+|.. .+.++..-|| +.--....++.+||+.+- .|
T Consensus 172 g~~~~~--~-i~laDTv----G~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g 244 (284)
T cd07942 172 TPENKI--I-LNLPATV----EVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGTLFG 244 (284)
T ss_pred CCCcce--E-EEccccc----cccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEeeCcc
Confidence 122111 1 1123442 3567888889998888888763 2334322232 122345568999999982 11
Q ss_pred CeeccCCCCCchHHHHHHHHcCCC
Q psy8190 310 DKLLTTDNTKTNDDSKLLKKLGIN 333 (348)
Q Consensus 310 ~~~~~~~g~~~~~~~~~i~~~G~~ 333 (348)
-- -...+...+++..+++..|+.
T Consensus 245 ~G-eRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 245 NG-ERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred CC-ccccchhHHHHHHHHHhcCCC
Confidence 10 012233457788888888875
No 249
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.92 E-value=8.2 Score=36.21 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHHHh-cCcEEEEecCCCCH----HHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCH-HHHHHHHHHHHH
Q psy8190 131 DLDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDY-ENRLNTLKNVRN 204 (348)
Q Consensus 131 ~~~~~~~l~~~i~~-~~~~i~~~~g~l~~----e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~-~~~~~~i~~~~~ 204 (348)
..+.+.+.++.+++ .+..+.++.+..+. +.++.+.++|++.+.+++-..+. -.... +... +.+.+.++.+++
T Consensus 85 g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~~ 162 (334)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVKS 162 (334)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHHh
Confidence 46777777777654 35677777654444 45667778899999987743111 01111 2223 346677777776
Q ss_pred c-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC------CCCCCCC---CCCCHHHHHHHHHHHHH
Q psy8190 205 V-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK------GTPLYGS---SILDPLEFIRTIAVARI 274 (348)
Q Consensus 205 ~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~------gT~l~~~---~~~~~~~~~~~~a~~R~ 274 (348)
. .+++.+-+-. ...+..+..+.+.+.+ .+.+.+..-.+.. ..++... .+......++++...+.
T Consensus 163 ~~~iPV~vKl~p----~~~~~~~~a~~l~~~G--~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~ 236 (334)
T PRK07565 163 AVSIPVAVKLSP----YFSNLANMAKRLDAAG--ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG 236 (334)
T ss_pred ccCCcEEEEeCC----CchhHHHHHHHHHHcC--CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHh
Confidence 4 4554443221 1235666677777787 7777654332211 0111111 11112233444444443
Q ss_pred HCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCc
Q psy8190 275 TMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINT 334 (348)
Q Consensus 275 ~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p 334 (348)
.+ ...|-.++|-.+ .+.....+.+||+.+..+.-+ -..|+.. +++.+++.+.||.=
T Consensus 237 ~~-~ipIig~GGI~s--~~Da~e~l~aGA~~V~v~t~~-~~~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 237 RV-GADLAATTGVHD--AEDVIKMLLAGADVVMIASAL-LRHGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred hc-CCCEEEECCCCC--HHHHHHHHHcCCCceeeehHH-hhhCcHHHHHHHHHHHHHHHHcCCCC
Confidence 33 223434444333 233445677999999665322 1234432 56778888999863
No 250
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=92.91 E-value=4.6 Score=36.18 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCC--CcccH----HHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWREL--KDRDL----DNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~--~~~~~----~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
+.|++...++..+..|++-+ .+|. ..| +++++ +.=+.++++.++ .|+.+. ...++.+.++...++ +|-
T Consensus 57 s~E~i~~~A~~vk~~Ga~~l-RGga-fKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vv--tEvm~~~~~e~~~~y-~Di 131 (286)
T COG2876 57 SEEQVRETAESVKAAGAKAL-RGGA-FKPRTSPYSFQGLGEEGLKLLKRAADETGLPVV--TEVMDVRDVEAAAEY-ADI 131 (286)
T ss_pred CHHHHHHHHHHHHHcchhhc-cCCc-CCCCCCcccccccCHHHHHHHHHHHHHcCCeeE--EEecCHHHHHHHHhh-hhH
Confidence 45788888888888887644 2222 222 11111 223344444443 577764 335777778887777 676
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe-eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc--ccc
Q psy8190 172 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN--LVQ 248 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~-i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~--l~P 248 (348)
+.+|. .-++.+..++++|-. --.-+==|++.|.|+++...+++.+-+ +.+.|-... ..-
T Consensus 132 lqvGA-----------------RNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILCERGIRtf 193 (286)
T COG2876 132 LQVGA-----------------RNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILCERGIRTF 193 (286)
T ss_pred HHhcc-----------------cchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEEecccccc
Confidence 66544 112334555666532 222334477889999999999988877 222221111 111
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHH--CCC-CceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARIT--MPT-SRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~--lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
...|++. -.+..+.++|.. ||= +.+.=++||..+-..+...++.+|||++|.+.
T Consensus 194 e~~TRnt--------LDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEV 250 (286)
T COG2876 194 EKATRNT--------LDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEV 250 (286)
T ss_pred cccccce--------echHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEe
Confidence 1233321 122344455543 232 11223466666656778889999999998754
No 251
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.79 E-value=7.4 Score=35.39 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=104.0
Q ss_pred EEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccC-C--C-CCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHH
Q psy8190 150 CLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-S--T-RDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQR 224 (348)
Q Consensus 150 ~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~--~-~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~ 224 (348)
.+-+|..+.-......++|+..+.++=-+ +-..++ | + -++++++..++.+.+ ..+++.+++=-|+|+ ....
T Consensus 20 ~~~pg~~d~~sA~la~~aGF~al~~sg~~---vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nv 95 (289)
T COG2513 20 LVLPGAWDAGSALLAERAGFKALYLSGAG---VAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNV 95 (289)
T ss_pred EEecCCcCHHHHHHHHHcCCeEEEeccHH---HHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHH
Confidence 33588899999999999999998853211 111222 2 2 268999999988876 589999999999998 9999
Q ss_pred HHHHHHHHhcCCCCCeeecc-cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc--eec-c--ccccccch--hhHH
Q psy8190 225 AELIFQLANLNPYPESVPIN-NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR--IRM-S--AGRKEMGE--TTQA 296 (348)
Q Consensus 225 ~~~l~~l~~l~~~~~~i~~~-~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~--i~~-s--~g~~~l~~--~~~~ 296 (348)
.++++.+.+.+ ...+.+- ...|..-.-+.+.+..+.++..+.+..++..-++.. |-+ . .+...+.. +-..
T Consensus 96 artV~~~~~aG--~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~ 173 (289)
T COG2513 96 ARTVRELEQAG--AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQ 173 (289)
T ss_pred HHHHHHHHHcC--cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHH
Confidence 99999999998 5555542 234443233344556788999999999888777532 211 1 11111221 2234
Q ss_pred HHHHhCcceeeeC
Q psy8190 297 FCFLAGANSIFYG 309 (348)
Q Consensus 297 ~~l~~GAn~~~~~ 309 (348)
....+|||.++..
T Consensus 174 AY~eAGAD~if~~ 186 (289)
T COG2513 174 AYVEAGADAIFPE 186 (289)
T ss_pred HHHHcCCcEEccc
Confidence 4578999999654
No 252
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.78 E-value=16 Score=40.32 Aligned_cols=208 Identities=11% Similarity=0.050 Sum_probs=120.8
Q ss_pred cCHHHHHHHHHHHHh--CCCCEEEEeccCCCC------CcccHHHHHHHHHHHHhcCcEEEEe----------cCCCCHH
Q psy8190 98 LSIESVITAAQKAKS--DGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLT----------LGMLNEN 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~--~G~~~i~l~gg~~~~------~~~~~~~~~~l~~~i~~~~~~i~~~----------~g~l~~e 159 (348)
+..++++..+..+.+ .|+-.+-+-||-+.. ...+++++..+=+.+....+..-+. +..+-+.
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~ 629 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKY 629 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHH
Confidence 445677777776665 377777565552210 1123333333333332222222111 2233345
Q ss_pred HHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee-------c-CCCHHHHHHHHHHH
Q psy8190 160 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-------L-SESRDQRAELIFQL 231 (348)
Q Consensus 160 ~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G-------l-get~e~~~~~l~~l 231 (348)
.++...+.|+|.+.+ |+.+ ...+....+++.+++.|..+...+.|- - ..|.+.+++..+.+
T Consensus 630 f~~~~~~~Gidifri--------fD~l---N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRV--------FDSL---NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHHHHcCCCEEEE--------CccC---cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 666777788886642 3332 467888889999999999887777774 2 45788888999999
Q ss_pred HhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCcceeee
Q psy8190 232 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 232 ~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~~~ 308 (348)
.+++ .+.+.+ +.| ....+|.....++...|..+ +..|.+- .|+ +..-....|+.+||+.+-.
T Consensus 699 ~~~G--ad~I~i------kDt----~Gll~P~~~~~Lv~~lk~~~-~~pi~~H--~Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 699 EKAG--AHILGI------KDM----AGLLKPAAAKLLIKALREKT-DLPIHFH--THDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred HHcC--CCEEEE------CCC----cCCcCHHHHHHHHHHHHHhc-CCeEEEE--ECCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9988 666543 222 23567788888888888765 3223221 121 2223345588999999822
Q ss_pred CCeeccCCCCC----chHHHHHHHHcCCC
Q psy8190 309 GDKLLTTDNTK----TNDDSKLLKKLGIN 333 (348)
Q Consensus 309 ~~~~~~~~g~~----~~~~~~~i~~~G~~ 333 (348)
.. ...+|.+ .+.....++..|+.
T Consensus 764 ai--~gl~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 764 AV--DSMSGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred cc--hhhcCCCCCHhHHHHHHHHHhCCCC
Confidence 11 1112222 36777888887776
No 253
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.64 E-value=6.3 Score=34.19 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=103.7
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++++....++.+.+.|++.+-++-. ++ .-.+.++.+++....+.+-.| .++.+.++...++|.+-+ +
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~--t~------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-v 85 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLR--TP------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-V 85 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCC--Cc------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-E
Confidence 3467899999999999999998877532 22 344556666653334555555 688999999999999865 3
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.-.++ +.++.+++.|+.+..+.+ |+.|+.. +.+++ .+.+.++|-....|.
T Consensus 86 sP~~~~----------------~v~~~~~~~~i~~iPG~~-----TptEi~~----A~~~G--a~~vKlFPA~~~GG~-- 136 (204)
T TIGR01182 86 SPGLTP----------------ELAKHAQDHGIPIIPGVA-----TPSEIML----ALELG--ITALKLFPAEVSGGV-- 136 (204)
T ss_pred CCCCCH----------------HHHHHHHHcCCcEECCCC-----CHHHHHH----HHHCC--CCEEEECCchhcCCH--
Confidence 322222 567888999998766533 6666544 44566 677766652211111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..+...+-.+|+..+-.++|- + .+.-...|.+|+..+..|..+.
T Consensus 137 ------------~yikal~~plp~i~~~ptGGV-~--~~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 137 ------------KMLKALAGPFPQVRFCPTGGI-N--LANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred ------------HHHHHHhccCCCCcEEecCCC-C--HHHHHHHHhCCCEEEEEChhhc
Confidence 234445556777544434432 1 2333446899999997776553
No 254
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.36 E-value=1.5 Score=43.28 Aligned_cols=120 Identities=12% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
+++.+.++.+.+.|++.|.+.... . .-..+.++++.||+....+.+-.| ..+.|..+.|.++|+|.|.+|+.+
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~-~----~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAH-G----HQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccC-C----ccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 456677778888899998876541 1 136889999999986444444453 678999999999999999988887
Q ss_pred C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy8190 179 S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 179 ~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
+ -..+..+.. -.+..+.++.+.+++.|.++.++ |--.+..++.+.+.
T Consensus 301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cccccccccCCch-hHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 3 222222222 25566777777777888775443 22356777776664
No 255
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.33 E-value=1.4 Score=41.45 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-C--
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-S-- 179 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~-- 179 (348)
.+.++.+.+.|++-++|.+. +. ..++..+.++.+++...++.+-.| ..|.+..+.|.++|+|.|-+|+.. +
T Consensus 110 ~er~~~L~~agvD~ivID~a--~g---~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiC 184 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSA--HG---HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSIC 184 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-S--ST---TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTB
T ss_pred HHHHHHHHHcCCCEEEcccc--Cc---cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccc
Confidence 55556677789999988765 11 226788899999885333333333 689999999999999999999876 4
Q ss_pred -HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy8190 180 -PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 180 -~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
.+.-..++.+ ....+.++-+.++++|+++.++. =-.+.-|+...|-
T Consensus 185 tTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIADG---Gi~~sGDi~KAla 231 (352)
T PF00478_consen 185 TTREVTGVGVP-QLTAVYECAEAARDYGVPIIADG---GIRTSGDIVKALA 231 (352)
T ss_dssp HHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEEES---S-SSHHHHHHHHH
T ss_pred ccccccccCCc-HHHHHHHHHHHhhhccCceeecC---CcCcccceeeeee
Confidence 2333334333 56678888899999998887762 1245667766653
No 256
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.32 E-value=7.7 Score=34.42 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 181 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e 181 (348)
.+.++...+.|++.+++++-. ........+.+.++++. .+.++.+-.|..+.+.++.|.++|++|+.+|-=.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~---~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a--- 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA---TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA--- 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh---CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce---
Confidence 444556677899999887631 11222333333333333 4677888899999999999999999999976422
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCee--eEe------Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 182 LYGDIISTRDYENRLNTLKNVRNVGINI--CCG------GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 182 ~l~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~------~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
-++++...+ .+++.|-++ ..+ .+=|- ..+.-+..+.++.+.+.+ ..++- +.-+-..||
T Consensus 108 -------v~~p~~v~~---~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g--~~~ii-~TdI~~DGt 174 (241)
T COG0106 108 -------VKNPDLVKE---LCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG--LAHIL-YTDISRDGT 174 (241)
T ss_pred -------ecCHHHHHH---HHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC--CCeEE-EEecccccc
Confidence 112333322 334444222 222 12233 223335666777777776 44543 333445666
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHh-CcceeeeCC
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGD 310 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~-GAn~~~~~~ 310 (348)
- ..++.+-+.++.... +..+.+|+|-..+. +... .-.. |+.+++.|.
T Consensus 175 l----~G~n~~l~~~l~~~~-----~ipviaSGGv~s~~-Di~~-l~~~~G~~GvIvG~ 222 (241)
T COG0106 175 L----SGPNVDLVKELAEAV-----DIPVIASGGVSSLD-DIKA-LKELSGVEGVIVGR 222 (241)
T ss_pred c----CCCCHHHHHHHHHHh-----CcCEEEecCcCCHH-HHHH-HHhcCCCcEEEEeh
Confidence 3 334555444444433 33455666644432 2222 2223 888887765
No 257
>PRK03739 2-isopropylmalate synthase; Validated
Probab=92.04 E-value=15 Score=37.10 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-----CcEEEEecCCCCHHHHHHHHH----h
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNENQAYRLKK----V 167 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-----~~~i~~~~g~l~~e~l~~Lk~----a 167 (348)
.++.++=++.++.+.+.|++.|-.+ + |...+.+ .+.++.+.+. +..+++-. ......++.-.+ +
T Consensus 48 ~~s~~~Ki~ia~~L~~~GV~~IE~G--f--P~~s~~e--~e~v~~i~~~~~~~~~~~i~~l~-r~~~~di~~a~~a~~~~ 120 (552)
T PRK03739 48 PMSPERKLRMFDLLVKIGFKEIEVG--F--PSASQTD--FDFVRELIEEGLIPDDVTIQVLT-QAREHLIERTFEALEGA 120 (552)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEE--C--CCcChHH--HHHHHHHHHhcCCCCCCEEEEEe-ccchhHHHHHHHHhcCC
Confidence 4789999999999999999998764 1 2222222 3455555332 34443211 222233444444 4
Q ss_pred CCCeeeccCCCCHHHHh-ccCCC--CCHHHHHHHHHHHHHcCCee---eEeEeeecC----CCHHHHHHHHHHHHhc-CC
Q psy8190 168 GLDYYNHNLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINI---CCGGIIGLS----ESRDQRAELIFQLANL-NP 236 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~-~i~~~--~~~~~~~~~i~~~~~~G~~i---~~~~i~Glg----et~e~~~~~l~~l~~l-~~ 236 (348)
+..++.+.+-+++.+.+ .+++. ...+...++++.+++.|... ...+.|+.. -.++.+.+.++.+.+. +.
T Consensus 121 ~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~a 200 (552)
T PRK03739 121 KRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQP 200 (552)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcC
Confidence 44468877777755443 45433 24555677788888888532 244455552 2456666666766553 21
Q ss_pred CCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCcceee---e-
Q psy8190 237 YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSIF---Y- 308 (348)
Q Consensus 237 ~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~~---~- 308 (348)
..+... .+-.|.|- ...+|.++.+++...+..+|+. .+.++..-|| +.--....|+.+||+.+= .
T Consensus 201 g~~~~~---~i~l~DTv----G~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG 273 (552)
T PRK03739 201 TPERKV---ILNLPATV----EMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFG 273 (552)
T ss_pred CCCcee---EEEeccCC----cCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCc
Confidence 133211 11145553 4567888889998888888742 2333322233 222345668999999982 1
Q ss_pred -CCeeccCCCCCchHHHHHHHHcCCC
Q psy8190 309 -GDKLLTTDNTKTNDDSKLLKKLGIN 333 (348)
Q Consensus 309 -~~~~~~~~g~~~~~~~~~i~~~G~~ 333 (348)
|+| +.+...+++.-.++..|+.
T Consensus 274 ~GER---aGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 274 NGER---TGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred Cccc---ccChhHHHHHHHHHhcCCC
Confidence 221 2233346666666667775
No 258
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.77 E-value=7.7 Score=33.22 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecC--CCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLG--MLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g--~l~~e~l~~Lk~aG~~~i~ 173 (348)
.++++..+.++.+.+. ++.+-++.. . ....=.+.++.+++. ++.+.+... ......++.+.++|.+.+.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~----~--~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTP----L--IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCH----H--HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 4678888888888776 777655211 0 111114556666653 445444322 2233467899999999998
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+..++.+ +...+.++.+++.|+.+... +.+ -.|.++... +...+ .+.+.+++-.. +++
T Consensus 83 ~h~~~~~------------~~~~~~i~~~~~~g~~~~v~-~~~-~~t~~e~~~----~~~~~--~d~v~~~~~~~-~~~- 140 (202)
T cd04726 83 VLGAAPL------------STIKKAVKAAKKYGKEVQVD-LIG-VEDPEKRAK----LLKLG--VDIVILHRGID-AQA- 140 (202)
T ss_pred EEeeCCH------------HHHHHHHHHHHHcCCeEEEE-EeC-CCCHHHHHH----HHHCC--CCEEEEcCccc-ccc-
Confidence 6554421 23345677888888765433 233 345666543 33445 67666642211 111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. . .+...+...++... ++..+.+.+|- +++....++.+|||.+..|..+
T Consensus 141 ~-~-~~~~~~~i~~~~~~-----~~~~i~~~GGI---~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 141 A-G-GWWPEDDLKKVKKL-----LGVKVAVAGGI---TPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred c-C-CCCCHHHHHHHHhh-----cCCCEEEECCc---CHHHHHHHHhcCCCEEEEeehh
Confidence 1 1 12233333222221 34445444442 2344556789999999888655
No 259
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.43 E-value=6.3 Score=35.20 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--cCCC-C-HHHHHHHHHhCCCeeec
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LGML-N-ENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--~g~l-~-~e~l~~Lk~aG~~~i~~ 174 (348)
..+.+.+.++.+++.|+..|.|+--. .....+.+.+.++++.... ++++.+ .... + .+-++.|.+.|+++|.-
T Consensus 71 E~~~M~~di~~~~~~GadGvV~G~L~-~dg~vD~~~~~~Li~~a~~--~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT 147 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVTGVLD-VDGHVDMPRMRKIMAAAGP--LAVTFHRAFDMCANPLNALKQLADLGVARILT 147 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC-CCCCcCHHHHHHHHHHhcC--CceEEechhhccCCHHHHHHHHHHcCCCEEEC
Confidence 45777788888899999999886542 2234678888888888764 444443 2322 2 35689999999999873
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHH
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAEL 227 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~ 227 (348)
+ +...+..+-++.++.+.+ ++ .. . +|.|-|=+.+.+.+.
T Consensus 148 S-----------Gg~~~a~~g~~~L~~lv~~a~-~~-~-Im~GgGV~~~Nv~~l 187 (248)
T PRK11572 148 S-----------GQQQDAEQGLSLIMELIAASD-GP-I-IMAGAGVRLSNLHKF 187 (248)
T ss_pred C-----------CCCCCHHHHHHHHHHHHHhcC-CC-E-EEeCCCCCHHHHHHH
Confidence 2 111234444555555544 33 21 2 888888888876654
No 260
>KOG2550|consensus
Probab=91.29 E-value=1.1 Score=42.47 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=80.7
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-CHHH
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-SPKL 182 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~e~ 182 (348)
...+.+.+.|++-|+|.+.- . .-.+..++++.+|+..++..+-.| .++.+..+.|.++|+|.+.+|+.+ +--+
T Consensus 254 ~rl~ll~~aGvdvviLDSSq-G----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCi 328 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQ-G----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICI 328 (503)
T ss_pred HHHHHhhhcCCcEEEEecCC-C----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceee
Confidence 34456678899999987652 1 225788999999997666665555 689999999999999999999987 5222
Q ss_pred Hhc---cCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy8190 183 YGD---IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 183 l~~---i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
-+. .+++ ....+.++.+.|+..|+++-++. --++..++...+
T Consensus 329 Tqevma~Grp-Q~TAVy~va~~A~q~gvpviADG---Giq~~Ghi~KAl 373 (503)
T KOG2550|consen 329 TQKVMACGRP-QGTAVYKVAEFANQFGVPCIADG---GIQNVGHVVKAL 373 (503)
T ss_pred eceeeeccCC-cccchhhHHHHHHhcCCceeecC---CcCccchhHhhh
Confidence 222 1222 23467888999999999876652 124555555444
No 261
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.25 E-value=9.8 Score=33.48 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=94.4
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
.+.++.+.+.|.+.|.++|. . ....+.+.++++.+|+..+++.+-||..+.=. -++|.+.+- .++
T Consensus 17 ~~~~~~~~~~gtdai~vGGS-~---~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~------~~aDa~l~~-----svl 81 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGS-Q---GVTYEKTDTLIEALRRYGLPIILFPSNPTNVS------RDADALFFP-----SVL 81 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCC-C---cccHHHHHHHHHHHhccCCCEEEeCCCccccC------cCCCEEEEE-----Eee
Confidence 34555667778888877654 2 23557899999999987788877666332100 246666642 122
Q ss_pred hccCCCCCHHHHHHHHHHHHHcCCee--eEeEeeecCC-------------CHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 184 GDIISTRDYENRLNTLKNVRNVGINI--CCGGIIGLSE-------------SRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 184 ~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~~i~Glge-------------t~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+.-++..-...-.+++...++.+..+ ...++++.|. +.+++........++ ..+..+..
T Consensus 82 Ns~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~------~g~~~vYl 155 (223)
T TIGR01768 82 NSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEM------LGMPIIYL 155 (223)
T ss_pred cCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHH------cCCcEEEE
Confidence 21111111123345556666666643 3556666532 344555554444443 12333333
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
.-|+-..+. .++ +++...|..+++..+.+..|-.+ .+.....+.+||+.++.|.
T Consensus 156 E~gs~~g~~--v~~----e~i~~v~~~~~~~pl~vGGGIrs--~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 156 EAGSGAPEP--VPP----ELVAEVKKVLDKARLFVGGGIRS--VEKAREMAEAGADTIVTGN 209 (223)
T ss_pred EecCCCCCC--cCH----HHHHHHHHHcCCCCEEEecCCCC--HHHHHHHHHcCCCEEEECc
Confidence 333333221 112 34455555554555655554322 3445557788999998875
No 262
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.13 E-value=1.4 Score=39.29 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--C
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 179 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et--~ 179 (348)
+.++.++.+.+.|++++++.+-... ......-.++++.+.+.-.++.+-.|..+.+.++.+.++|++++.+|-++ +
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a--~~g~~~n~~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~ 108 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKA--IENSVENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED 108 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc--ccCCcchHHHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 3355556667789999999875211 11223345566666543257777889999999999999999999887765 2
Q ss_pred HHHHhc
Q psy8190 180 PKLYGD 185 (348)
Q Consensus 180 ~e~l~~ 185 (348)
+++++.
T Consensus 109 p~~l~~ 114 (241)
T PRK14114 109 PSFLKF 114 (241)
T ss_pred HHHHHH
Confidence 555443
No 263
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.04 E-value=8.6 Score=36.62 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEecCC-CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe
Q psy8190 130 RDLDNIENMICEVKKIGLETCLTLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~~g~-l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
.+.+.+.++++.+++.++.+.+..+. -..+.++.+.++|++-+.+.--+....| ...... +.+..+..++.+++
T Consensus 116 ~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~--~sg~~~---p~~l~~~i~~~~IP 190 (369)
T TIGR01304 116 LKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEH--VSTSGE---PLNLKEFIGELDVP 190 (369)
T ss_pred cChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc--cCCCCC---HHHHHHHHHHCCCC
Confidence 35678899999999876555444443 3457889999999999886543322222 111223 34444555566776
Q ss_pred eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCC-----cee
Q psy8190 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-YGSSILDPLEFIRTIAVARITMPTS-----RIR 282 (348)
Q Consensus 209 i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l-~~~~~~~~~~~~~~~a~~R~~lp~~-----~i~ 282 (348)
+- .|-.-|.++..+.+ +.+ ++.|.+..---.. |.. .....+......+..+..|.++... .+-
T Consensus 191 VI----~G~V~t~e~A~~~~----~aG--aDgV~~G~gg~~~-~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVI 259 (369)
T TIGR01304 191 VI----AGGVNDYTTALHLM----RTG--AAGVIVGPGGANT-TRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVI 259 (369)
T ss_pred EE----EeCCCCHHHHHHHH----HcC--CCEEEECCCCCcc-cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 53 34455666654443 356 6776522111000 111 1112233334444555555554332 233
Q ss_pred ccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 283 MSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 283 ~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+.+|-.+ ...-..++.+||+.++.|..+
T Consensus 260 AdGGI~t--g~di~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 260 ADGGIET--SGDLVKAIACGADAVVLGSPL 287 (369)
T ss_pred EeCCCCC--HHHHHHHHHcCCCEeeeHHHH
Confidence 4444322 233455889999999876543
No 264
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.92 E-value=3.1 Score=38.82 Aligned_cols=113 Identities=10% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHHh--CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-CH--
Q psy8190 107 AQKAKS--DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-SP-- 180 (348)
Q Consensus 107 ~~~~~~--~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~-- 180 (348)
++.+.+ .|++.|++... + -.-+...++++.+|+....+.+-.| ..|.|..+.|.++|+|.+-+|+.. +-
T Consensus 113 ~~~L~~~~~g~D~iviD~A--h---Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 113 TKQILALSPALNFICIDVA--N---GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHhcCCCCCEEEEECC--C---CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 344444 48888888654 1 1236889999999986444444444 679999999999999999888775 31
Q ss_pred -HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy8190 181 -KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 181 -e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
++-..++.+ ....+.++-+.+++.|.++.++.= -.+.-|+...+
T Consensus 188 Tr~vtGvG~P-QltAV~~~a~~a~~~gvpiIADGG---i~~sGDI~KAl 232 (346)
T PRK05096 188 TRVKTGVGYP-QLSAVIECADAAHGLGGQIVSDGG---CTVPGDVAKAF 232 (346)
T ss_pred CccccccChh-HHHHHHHHHHHHHHcCCCEEecCC---cccccHHHHHH
Confidence 111122222 456778888889999988766521 13445565554
No 265
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.92 E-value=1.5 Score=39.05 Aligned_cols=180 Identities=10% Similarity=0.081 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 99 SIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 99 ~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
+|.+ .++.+.+ .|++++++.+-... ....+.-.++++.+.+ .++++.+-.|..+.|.++.+.++|++++.+|-
T Consensus 32 dp~~---~a~~~~~~~Ga~~l~ivDLd~a--~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 32 SAEE---SIAYYSQFECVNRIHIVDLIGA--KAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred CHHH---HHHHHHhccCCCEEEEEECccc--ccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 5545 4455556 58999999864211 1122233555655554 46788888999999999999999999999887
Q ss_pred CC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE------eeec-CCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy8190 177 DT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG------IIGL-SESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 177 et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~------i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
++ ++++++.+. +..-+ .+-++.+. +.|. ..+.-+..+.+..+.+++ ...+-+.. +
T Consensus 107 ~a~~~~~~l~~~~------------~~fg~-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~td-i 170 (234)
T PRK13587 107 KGIQDTDWLKEMA------------HTFPG-RIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIP--LGGIIYTD-I 170 (234)
T ss_pred hHhcCHHHHHHHH------------HHcCC-CEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcC--CCEEEEec-c
Confidence 66 355554331 11111 12233332 2222 233334566666666676 44443332 2
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 248 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
-..||- ..++.+.+.++.. . .+..+.+++|-.+. .+. ...+..|++.++.|.
T Consensus 171 ~~dGt~----~G~~~~li~~l~~----~-~~ipvi~~GGi~s~-edi-~~l~~~G~~~vivG~ 222 (234)
T PRK13587 171 AKDGKM----SGPNFELTGQLVK----A-TTIPVIASGGIRHQ-QDI-QRLASLNVHAAIIGK 222 (234)
T ss_pred cCcCCC----CccCHHHHHHHHH----h-CCCCEEEeCCCCCH-HHH-HHHHHcCCCEEEEhH
Confidence 234442 2233332222221 1 23345556553332 223 335678999997764
No 266
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=90.91 E-value=17 Score=35.47 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=97.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C-cEEE--EecCCCCHHHHHHHHHhCCCee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G-LETC--LTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~-~~i~--~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
..++++.++.++.+.+.|++.|.++ . + .......+.++.+++. + ..+. +..-......++.+.++|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g---~-p--~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV 85 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAG---T-P--LIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIV 85 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeC---C-H--HHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEE
Confidence 3678899999998888999888762 1 1 1113345666666553 2 1222 1222224558999999999998
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.+--++++ ....+.++.+++.|+.+..++ +. .+|..+ .+..+.+++ .+.+.+.+... +.
T Consensus 86 ~v~g~~~~------------~~~~~~i~~a~~~G~~~~~g~-~s-~~t~~e---~~~~a~~~G--aD~I~~~pg~~--~~ 144 (430)
T PRK07028 86 CILGLADD------------STIEDAVRAARKYGVRLMADL-IN-VPDPVK---RAVELEELG--VDYINVHVGID--QQ 144 (430)
T ss_pred EEecCCCh------------HHHHHHHHHHHHcCCEEEEEe-cC-CCCHHH---HHHHHHhcC--CCEEEEEeccc--hh
Confidence 85322221 123567788888888764432 11 234322 245555676 78886553221 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
.+ .+...+ .+...+..++ ..|-+.+| +..+.....+.+||+.+..|..+.
T Consensus 145 ~~----~~~~~~---~l~~l~~~~~-iPI~a~GG---I~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 145 ML----GKDPLE---LLKEVSEEVS-IPIAVAGG---LDAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred hc----CCChHH---HHHHHHhhCC-CcEEEECC---CCHHHHHHHHHcCCCEEEEChHHc
Confidence 11 112222 2222222222 22322332 223445567899999998887654
No 267
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=90.89 E-value=12 Score=33.71 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=102.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHh--CCCeee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
..+++.+++.++...+.|+.-+=++++. . .....+.+..++..+++. ++. ++..+.+.+.++.-.++ |.+-|+
T Consensus 22 ~~~~d~~~~~A~~~~~~GAdiIDIG~~~-~-~~~~~ee~~r~v~~i~~~~~~p--iSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVEGGAQILDLNVDY-G-GLDGVSAMKWLLNLLATEPTVP--LMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCC-C-CCCHHHHHHHHHHHHHHhcCCc--EEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 4688999999999999999998887752 1 222345555665556553 444 46778888888876666 877655
Q ss_pred ccCCCCHHHHhccCCCCCH-HHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 174 HNLDTSPKLYGDIISTRDY-ENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~-~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
++ ... .+ +...+.+..++++|..+..--+ -|..+|.++..+.+..+.+.-..-..++-..++.-|
T Consensus 98 -sI----------s~~-~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDP 165 (252)
T cd00740 98 -SI----------NLE-DGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDP 165 (252)
T ss_pred -eC----------CCC-CCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 11 111 11 1222344667788876543323 345556665555444333210000112223344444
Q ss_pred CCCCCCCC-CCCHHHH---HHHHHHHHHHCCCCceec-----c-----ccccccchhhHHHHHHhCcceeee
Q psy8190 251 GTPLYGSS-ILDPLEF---IRTIAVARITMPTSRIRM-----S-----AGRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 251 gT~l~~~~-~~~~~~~---~~~~a~~R~~lp~~~i~~-----s-----~g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
|.-+.... .-+..+. ++.+...|..+|+..+-+ | +.|+.+..-+..++..+|.|+-+.
T Consensus 166 gig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~SnkSf~~~~~~r~~in~~f~~~a~~~Gl~~ai~ 237 (252)
T cd00740 166 LILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVSNVSFGFNPAAREALNSVFLYEAIKAGLDMAIV 237 (252)
T ss_pred CcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecccccCCCchhHHHHHHHHHHHHHHcccceeec
Confidence 43322110 0111123 334444444466543322 2 113333345666778888888754
No 268
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=90.73 E-value=0.7 Score=43.70 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhcCcEEEE--ecCC-----CCHHHHHHHHHhCCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKIGLETCL--TLGM-----LNENQAYRLKKVGLD 170 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~~g~-----l~~e~l~~Lk~aG~~ 170 (348)
+.++..+.++.+.+.|+++|+.+=. .+.......+.+.++++..++.++.+.+ |+.. .+.+.++.+++.|++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~ 91 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGID 91 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-S
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 5788899999999999998754322 1111123457788888888888888875 4432 334568899999999
Q ss_pred eeeccCC
Q psy8190 171 YYNHNLD 177 (348)
Q Consensus 171 ~i~~g~e 177 (348)
.+-+.-.
T Consensus 92 ~lRlD~G 98 (357)
T PF05913_consen 92 GLRLDYG 98 (357)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 8887543
No 269
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=90.48 E-value=2.6 Score=36.80 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc------ccHHHHHHHHHHHHh--cCcEEEEecCCCCHHHHHHHHHhCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKK--IGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~------~~~~~~~~l~~~i~~--~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
.+.++.++.+++..+.|+.-|=++++.+.|.. ...+++..+++.+.+ .++.+ +..+...+.++.--++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~pl--SIDT~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPL--SIDTFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEE--EEEESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEE--EEECCCHHHHHHHHHcCc
Confidence 56788888899999999999999877433321 245577788888875 35555 455666777766666677
Q ss_pred Ceee
Q psy8190 170 DYYN 173 (348)
Q Consensus 170 ~~i~ 173 (348)
+-++
T Consensus 94 ~~in 97 (210)
T PF00809_consen 94 DIIN 97 (210)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 6555
No 270
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=90.45 E-value=1.6 Score=42.12 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCeeeccCCCCHHHHhccCCCC-CHHHHHHHHHHHHHcC------CeeeEeEeeec-C----------CC
Q psy8190 159 NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTR-DYENRLNTLKNVRNVG------INICCGGIIGL-S----------ES 220 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~-~~~~~~~~i~~~~~~G------~~i~~~~i~Gl-g----------et 220 (348)
+.++.|.++|++ ++..+ -++|+- +.++..++++.+.+.| +...+-+.+|+ . -|
T Consensus 168 ~~l~~l~~~~I~-~h~qi--------VlcPGiNDg~~L~~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~ 238 (433)
T TIGR03279 168 EQLKWFQERRLQ-LHAQV--------VVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVT 238 (433)
T ss_pred HHHHHHHHcCCe-EEEEE--------EEcCCcCCHHHHHHHHHHHHhhcccCCCceeEEEEEccccccCCCCCCCCccCC
Confidence 566777777765 33211 356664 6678888888888773 23345556676 3 25
Q ss_pred HHHHHHHHHHHHhcC
Q psy8190 221 RDQRAELIFQLANLN 235 (348)
Q Consensus 221 ~e~~~~~l~~l~~l~ 235 (348)
.++-.+.+..+..++
T Consensus 239 ~e~A~~vi~~ie~~q 253 (433)
T TIGR03279 239 PECARRVIAQVEALQ 253 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
No 271
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=90.40 E-value=12 Score=33.13 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHH----HHHHHhCCCeeeccCCC-CH
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQA----YRLKKVGLDYYNHNLDT-SP 180 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l----~~Lk~aG~~~i~~g~et-~~ 180 (348)
.++.+.+.|.++|.. ....+++.+.+..+++.+..+.++....+.+.+ +.+.+ +.+.+.+++.- .+
T Consensus 40 aa~~~~~~~~~ef~~--------~~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~ 110 (233)
T cd02911 40 AARKLVKRGRKEFLP--------DDPLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQP 110 (233)
T ss_pred HHHHHHhcCCccccc--------cchHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcH
Confidence 345566777777632 124577777888777667777778766555543 33334 45888888876 56
Q ss_pred HHHhccCC---CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 181 KLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 181 e~l~~i~~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
++.+.=.. .++++...+.++.+++.++++++-+=.|. + ++..+..+.+.+.+ .+.+.+
T Consensus 111 ~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~--~-~~~~~la~~l~~aG--~d~ihv 171 (233)
T cd02911 111 EMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGV--D-VDDEELARLIEKAG--ADIIHV 171 (233)
T ss_pred HHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc--C-cCHHHHHHHHHHhC--CCEEEE
Confidence 55543221 24788888888888888777665544443 3 55667777777877 776544
No 272
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=90.35 E-value=5.4 Score=38.03 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHH
Q psy8190 190 RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 269 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~ 269 (348)
.+.++..+..+.+++.|--+..-+- .|.-.+|+..-++...+++ +|. |+ .+|-||.. ..-....+.+.+
T Consensus 203 ApldE~~~Va~~Akk~gkGveaI~~--vGDGyddLI~G~~a~id~~--vDv-----fV-vEGgPFN~-a~dRl~aFakaV 271 (505)
T PF10113_consen 203 APLDEMEEVAELAKKYGKGVEAIMH--VGDGYDDLITGLKACIDMG--VDV-----FV-VEGGPFNR-AKDRLKAFAKAV 271 (505)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEE--ecCChHHHHHHHHHHHhcC--CcE-----EE-EeCCCccc-chhHHHHHHHHH
Confidence 3789999999999998876544333 3677899999999998887 554 33 46778643 333567789999
Q ss_pred HHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC
Q psy8190 270 AVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 270 a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
+++|++.|...+...+ -..+.-..+|++|-|.++.|
T Consensus 272 a~sRIL~pGkVVaTNG----AYEDEcRiGLRsGLN~iitG 307 (505)
T PF10113_consen 272 AASRILVPGKVVATNG----AYEDECRIGLRSGLNVIITG 307 (505)
T ss_pred HHheeeecCcEEecCC----cchHHHHHHHhhccceeecc
Confidence 9999999885443211 11345677999999999654
No 273
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.33 E-value=2.1 Score=38.05 Aligned_cols=176 Identities=19% Similarity=0.137 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC--
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-- 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-- 178 (348)
+.++.++.+.+.|++++++.+-+.. ... ..-.++++++.+ ...++.+-.|..+.+.++.+.++|++++.+|-++
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~--~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGV--GNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCC--cchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 3455556677789999999875211 111 122377777766 3347788889999999999999999999988766
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHcC---CeeeEeE-----ee--ecCCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 179 SPKLYGDIISTRDYENRLNTLKNVRNVG---INICCGG-----II--GLSESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~G---~~i~~~~-----i~--Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+++.++.+ +++.| +-++.++ ++ |..++.-+..+.+..+.+++ ...+-+... -
T Consensus 108 ~p~~~~~~---------------~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g--~~~ii~tdI-~ 169 (232)
T PRK13586 108 NFNLFHDI---------------VREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELE--LLGIIFTYI-S 169 (232)
T ss_pred CHHHHHHH---------------HHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcC--CCEEEEecc-c
Confidence 35555432 22222 1222222 22 22223335667777777776 555544332 2
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
..||- ..++.+ .++.+ +.. +.. +-+++|-.++ .+.... ...|++..+.|.
T Consensus 170 ~dGt~----~G~d~e-l~~~~---~~~-~~~-viasGGv~s~-~Dl~~l-~~~G~~gvivg~ 219 (232)
T PRK13586 170 NEGTT----KGIDYN-VKDYA---RLI-RGL-KEYAGGVSSD-ADLEYL-KNVGFDYIIVGM 219 (232)
T ss_pred ccccC----cCcCHH-HHHHH---HhC-CCC-EEEECCCCCH-HHHHHH-HHCCCCEEEEeh
Confidence 35553 223433 33333 222 444 4456654443 233333 367999887664
No 274
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.31 E-value=12 Score=32.77 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=100.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C--cEEEEecC-CCCHHHHHHHHHhCCCee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G--LETCLTLG-MLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~--~~i~~~~g-~l~~e~l~~Lk~aG~~~i 172 (348)
..+.++.+..++.+.+.|++.+-++-- ++ .-.+.++.+++. + ..+.+-.| .++.+.++...++|.+.+
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~--~~------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYT--NP------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC--Cc------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 457899999999999999998766432 22 233555555542 2 24655566 678999999999998754
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
- +.-.++ +.++.+++.|+.+-.+ -.|+.++...+ +.+ .+.+.+++ ..
T Consensus 93 v-sP~~~~----------------~v~~~~~~~~i~~iPG-----~~T~~E~~~A~----~~G--ad~vklFP-----a~ 139 (213)
T PRK06552 93 V-SPSFNR----------------ETAKICNLYQIPYLPG-----CMTVTEIVTAL----EAG--SEIVKLFP-----GS 139 (213)
T ss_pred E-CCCCCH----------------HHHHHHHHcCCCEECC-----cCCHHHHHHHH----HcC--CCEEEECC-----cc
Confidence 3 222222 3366788899876544 23677665543 576 78888633 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+ ..+ ..+...+-.+|+..+-..+|- ..+.....+.+||+.+..|..+
T Consensus 140 ~------~G~----~~ik~l~~~~p~ip~~atGGI---~~~N~~~~l~aGa~~vavgs~l 186 (213)
T PRK06552 140 T------LGP----SFIKAIKGPLPQVNVMVTGGV---NLDNVKDWFAAGADAVGIGGEL 186 (213)
T ss_pred c------CCH----HHHHHHhhhCCCCEEEEECCC---CHHHHHHHHHCCCcEEEEchHH
Confidence 1 122 234455666776544444432 2233445689999999766554
No 275
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=90.27 E-value=0.62 Score=40.92 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++.+... ....++|+-. |.+. ....+.+.++++.+++.|+.+++-. .-+.+.++.-++.|.+
T Consensus 72 t~em~~ia~~~---kP~~vtLVPEkr~E~TTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFi-DPd~~qi~~A~~~GAd 146 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGLDV-AGQAEKLKPIIERLKDAGIRVSLFI-DPDPEQIEAAKEVGAD 146 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh-hcCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 46677665443 3456666521 1111 2356889999999999998876544 3567899999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHH
Q psy8190 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQR 224 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~ 224 (348)
+|.+.-+.-.+.+..-.....++...++.+.+++.|+.++++ +|=+++.+
T Consensus 147 ~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnAG----HgLny~Nv 196 (234)
T cd00003 147 RVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNAG----HGLNYENV 196 (234)
T ss_pred EEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecC----CCCCHHHH
Confidence 998755441111111001124567777888888899888765 55555544
No 276
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=90.17 E-value=24 Score=39.05 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=117.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHh--CCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
.+.+.+++.++...+.|..-+=+..|. +.....+.+..++..+... ...+-++..+...+.++.--++ |..-|+
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~--~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IIN 458 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDE--GMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVN 458 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEE
Confidence 577899999999999999888776552 2222344555555555531 1233346777888888766666 766555
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHHHHhc-----CCCCCeeecccc
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANL-----NPYPESVPINNL 246 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~l~~l-----~~~~~~i~~~~l 246 (348)
.+.-...-+...+.+..++++|..+...-+ -|.-.|.++.++..+.+.+. +-.++.|.|-++
T Consensus 459 -----------SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dpl 527 (1229)
T PRK09490 459 -----------SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPPEDIIFDPN 527 (1229)
T ss_pred -----------eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCC
Confidence 111110112344667888899987765545 46667888887776554443 322445555555
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee-----ccc-------cccccchhhHHHHHHhCcceeee
Q psy8190 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR-----MSA-------GRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~-----~s~-------g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
+-.-+|-...+ .....+.++.+...+..+|..++. +|- .|+.++.-+-+.++.+|-|.-+.
T Consensus 528 v~~v~t~~ee~-~~~~~~~leair~ik~~~P~~~~~~GlSNiSFgl~g~~~~R~~lns~FL~~a~~aGld~aIv 600 (1229)
T PRK09490 528 IFAVATGIEEH-NNYAVDFIEATRWIKQNLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMGIV 600 (1229)
T ss_pred cceeecChHHH-HHHHHHHHHHHHHHHHHCCCCcEEEeeccccccCCCCCchHHHHHHHHHHHHHHcCcchhhc
Confidence 43333332211 224567777777778888875432 221 24444455667788888887643
No 277
>KOG2367|consensus
Probab=90.16 E-value=19 Score=35.05 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=114.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHhCCCeee
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG---MLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g---~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+++++-++.++.+.+.|+..|-++.- ..+..+++...-+++.+ ...+.+++..- ..-+-.++.|+.|.--+|.
T Consensus 75 ~~~~~qK~eiar~L~~~gvd~IEv~fP--~aSe~~~~~~~~i~k~~-g~~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh 151 (560)
T KOG2367|consen 75 FLTTEQKLEIARQLAKLGVDIIEVGFP--VASEQDFEDCKTIAKTL-GYVPVICTLIRCHMDDIERTVEALKYAKRPRVH 151 (560)
T ss_pred cCCcHHHHHHHHHHHhcCcCEEEecCc--ccCcchHHHHHHHHHhC-CCCceEEEeeccchHHHHHHHHHhhccCcceEE
Confidence 378899999999999999999866432 12334555555555543 33445544332 2223345666655555577
Q ss_pred ccCCCCHHHHhccCCCCCH----HHHHHHHHHHHHcCCeeeEeEeeec---CC-CHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 174 HNLDTSPKLYGDIISTRDY----ENRLNTLKNVRNVGINICCGGIIGL---SE-SRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~----~~~~~~i~~~~~~G~~i~~~~i~Gl---ge-t~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+-+-|++ +++++.-+++. +-..+.++.++++|. .++=|+. +. ..+.+.+.+..+.+.+ ...+.
T Consensus 152 ~~~aTSd-~~rey~~~kskeevi~~Ave~ikfvkslg~---~~ieFSpEd~~rse~~fl~eI~~aV~Kag--~~tvn--- 222 (560)
T KOG2367|consen 152 VFIATSD-IHREYKLKKSKEEVIESAVEVIKFVKSLGK---WDIEFSPEDFGRSELEFLLEILGAVIKAG--VTTVN--- 222 (560)
T ss_pred EEecccH-HHHHHHhcccHHHHHHHHHHHHHHHHhccc---ceEEECccccccCcHHHHHHHHHHHHHhC--Ccccc---
Confidence 6666664 44444434444 445677888888884 2223333 22 3466677777777776 33321
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceeccccccc---cchhhHHHHHHhCccee
Q psy8190 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
.|.|. ...+|.++.+++..++--.|.. .+-++..-|| +.--..+.++.+||+.+
T Consensus 223 ---ipdTV----gia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~V 280 (560)
T KOG2367|consen 223 ---IPDTV----GIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQV 280 (560)
T ss_pred ---Cccee----cccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceE
Confidence 24442 3457788999999998877774 3334432233 11335677899999998
No 278
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.15 E-value=9.3 Score=34.99 Aligned_cols=126 Identities=16% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHHH-Hh
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRLK-KV 167 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~Lk-~a 167 (348)
.+..+.+.|+++|-+-|+ .-|...+.....++++..+..|+.+....|. .+++..+.+. +-
T Consensus 89 ~i~~ai~~GftSVMiDgS-~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 89 DIKKKVRAGIRSVMIDGS-HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHcCCCeEEecCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 334566779999988776 2333445666677777777777777654321 1345555444 57
Q ss_pred CCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 168 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
|+|.+-+++.|.--.|+. .|..+++ +++.|+.. .++++ ++-|- |-..+++ +.+.+++ +..|.+..
T Consensus 168 gvD~LAvaiGt~HG~y~~-~p~Ld~~-~L~~I~~~--~~iPL---VlHGgSG~~~e~~----~kai~~G--i~KiNi~T 233 (284)
T PRK12737 168 GIDSLAVAIGTAHGLYKG-EPKLDFE-RLAEIREK--VSIPL---VLHGASGVPDEDV----KKAISLG--ICKVNVAT 233 (284)
T ss_pred CCCEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHH----HHHHHCC--CeEEEeCc
Confidence 999999999986556653 3344555 33333322 25554 44555 5555554 4445666 55555543
No 279
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=90.03 E-value=2.6 Score=37.51 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=79.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--------cCCCCHHHHHHHHHhCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--------LGMLNENQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--------~g~l~~e~l~~Lk~aG~ 169 (348)
+++..+.+.++.+.++ ++.+-|++|. ....+.+.+.+.++..++.++.++.- .-..-++.++.+++.|+
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt--~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf 98 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGT--SALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGF 98 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTG--GGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCce--eeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCC
Confidence 4566665555444333 7888898873 23345577899999999888888631 11233578999999999
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecC-------CCHHHHHHHHHHHHhcCCCCCeee
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-------ESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glg-------et~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
+.|.++-.|. .-+.+++.+.|+.+++.|+.+-+- +|-. .+.+++++.++.-.+.+ .+.|-
T Consensus 99 ~~IEiSdGti---------~l~~~~r~~~I~~~~~~Gf~v~~E--vG~K~~~~~~~~~~~~~i~~~~~dLeAG--A~~Vi 165 (244)
T PF02679_consen 99 DAIEISDGTI---------DLPEEERLRLIRKAKEEGFKVLSE--VGKKDPESDFSLDPEELIEQAKRDLEAG--ADKVI 165 (244)
T ss_dssp SEEEE--SSS------------HHHHHHHHHHHCCTTSEEEEE--ES-SSHHHHTT--CCHHHHHHHHHHHHT--ECEEE
T ss_pred CEEEecCCce---------eCCHHHHHHHHHHHHHCCCEEeec--ccCCCchhcccCCHHHHHHHHHHHHHCC--CCEEE
Confidence 9998866552 236778889999999999987654 3331 23556777776666666 55544
Q ss_pred c
Q psy8190 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 166 i 166 (244)
T PF02679_consen 166 I 166 (244)
T ss_dssp E
T ss_pred E
Confidence 3
No 280
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=89.97 E-value=8.7 Score=33.90 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-------ecCCCCH-HHHHHHHHhCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-------TLGMLNE-NQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-------~~g~l~~-e~l~~Lk~aG~ 169 (348)
+..+...+......|++.|-++=.+........+.+..+.+.++.. +..+-. ..+.+++ +..+..+++|+
T Consensus 66 p~~~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 66 PGTASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF 145 (235)
T ss_pred chHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC
Confidence 4555555555556799988764322111222344455555666653 222221 2344544 56678899999
Q ss_pred CeeeccCCC-C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 170 DYYNHNLDT-S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et-~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+.+-+ +| . ..+++. .+.++.-+.++.+|++|+.+ |+ |.= ..+++..|..++ |+.++|-
T Consensus 146 ~gvMl--DTa~Kdg~~L~d~----~~~~~L~~Fv~~ar~~gL~~------aLAGSL---~~~di~~L~~l~--pD~lGfR 208 (235)
T PF04476_consen 146 DGVML--DTADKDGGSLFDH----LSEEELAEFVAQARAHGLMC------ALAGSL---RFEDIPRLKRLG--PDILGFR 208 (235)
T ss_pred CEEEE--ecccCCCCchhhc----CCHHHHHHHHHHHHHccchh------hccccC---ChhHHHHHHhcC--CCEEEec
Confidence 98765 55 2 234443 37888899999999998754 44 321 245667788898 9999886
Q ss_pred ccccc
Q psy8190 245 NLVQI 249 (348)
Q Consensus 245 ~l~P~ 249 (348)
.-.-.
T Consensus 209 GAvC~ 213 (235)
T PF04476_consen 209 GAVCG 213 (235)
T ss_pred hhhCC
Confidence 65533
No 281
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.75 E-value=18 Score=34.55 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHhcCcEEEEecCC-CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe
Q psy8190 130 RDLDNIENMICEVKKIGLETCLTLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~~~~i~~~~g~-l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
.+.+.+.++++.+++.++.+.+..+. -..+.++.+.++|++.+.+..-|.+..|. +...++.+ ..+..++.+++
T Consensus 115 ~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~--~~~~~~~~---i~~~ik~~~ip 189 (368)
T PRK08649 115 IKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHV--SKEGEPLN---LKEFIYELDVP 189 (368)
T ss_pred CCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc--CCcCCHHH---HHHHHHHCCCC
Confidence 35678888999998866555444433 34688999999999999875544222221 11113444 45555556766
Q ss_pred eeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC----CC-CCCCCCCHHHHHHHHHHHHHHCC-----C
Q psy8190 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT----PL-YGSSILDPLEFIRTIAVARITMP-----T 278 (348)
Q Consensus 209 i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT----~l-~~~~~~~~~~~~~~~a~~R~~lp-----~ 278 (348)
+ |.|---|.++..+.+ +.+ .+.|-+. .- +|+ +. .....|......+..+.++.++. +
T Consensus 190 V----IaG~V~t~e~A~~l~----~aG--AD~V~VG-~G--~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~ 256 (368)
T PRK08649 190 V----IVGGCVTYTTALHLM----RTG--AAGVLVG-IG--PGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRY 256 (368)
T ss_pred E----EEeCCCCHHHHHHHH----HcC--CCEEEEC-CC--CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCC
Confidence 5 334445666554443 466 7777543 22 332 11 11122322333444444444432 2
Q ss_pred CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 279 SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 279 ~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
..|-+.+|-.+ ...-..++.+||+.++.|..+.
T Consensus 257 vpVIAdGGI~~--~~diakAlalGAd~Vm~Gs~fa 289 (368)
T PRK08649 257 VHVIADGGIGT--SGDIAKAIACGADAVMLGSPLA 289 (368)
T ss_pred CeEEEeCCCCC--HHHHHHHHHcCCCeecccchhc
Confidence 22333444222 2334558899999998886553
No 282
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.63 E-value=15 Score=32.95 Aligned_cols=205 Identities=17% Similarity=0.176 Sum_probs=110.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCc---ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWR---ELKD---RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~---~~~~---~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
=+.+.+.+.++..++.|+.- +..|.+. +|+. ...+.+..+.+.-++.|+.+.. ...+.+.++.+.+ .++.
T Consensus 26 Es~e~~~~~a~~~~~~g~~~-~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e-~vdi 101 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNY-FRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD-YLDV 101 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCE-EEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh-cCCE
Confidence 35788888898888888754 4544421 1111 2345555555555557888864 4578888999988 5998
Q ss_pred eeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 172 YNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 172 i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
+.++--. .+ .+.++.+.+.|.+|.. =-|..-|.+++...++.+.+-+ ...+.+. +.
T Consensus 102 lqIgs~~~~n---------------~~LL~~va~tgkPVil--k~G~~~t~~e~~~A~e~i~~~G--n~~i~L~----eR 158 (250)
T PRK13397 102 IQVGARNMQN---------------FEFLKTLSHIDKPILF--KRGLMATIEEYLGALSYLQDTG--KSNIILC----ER 158 (250)
T ss_pred EEECcccccC---------------HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC--CCeEEEE----cc
Confidence 8875422 10 2334444455655421 1233468899999999988776 3332221 22
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCC-ceecc--ccccccchhhHHHHHHhCcceeeeCCeecc----CCCCC---c
Q psy8190 251 GTPLYGSSILDPLEFIRTIAVARITMPTS-RIRMS--AGRKEMGETTQAFCFLAGANSIFYGDKLLT----TDNTK---T 320 (348)
Q Consensus 251 gT~l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~----~~g~~---~ 320 (348)
||.-|..+ ....-.++.+...|..+.-. .+-.| .|...+-......|+.+||++++.+....+ .+|+. .
T Consensus 159 g~~~Y~~~-~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~ 237 (250)
T PRK13397 159 GVRGYDVE-TRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDY 237 (250)
T ss_pred ccCCCCCc-cccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCH
Confidence 44222111 00012233334444322111 11122 222112236778899999999987654321 23332 2
Q ss_pred hHHHHHHHHc
Q psy8190 321 NDDSKLLKKL 330 (348)
Q Consensus 321 ~~~~~~i~~~ 330 (348)
++..++++++
T Consensus 238 ~~l~~l~~~~ 247 (250)
T PRK13397 238 KQLEQLGQEL 247 (250)
T ss_pred HHHHHHHHHh
Confidence 4666666654
No 283
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.48 E-value=5.3 Score=37.30 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=71.5
Q ss_pred HHHHHHhC--CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeeccCCC-CH-
Q psy8190 106 AAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHNLDT-SP- 180 (348)
Q Consensus 106 ~~~~~~~~--G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g~et-~~- 180 (348)
.++.+.+. +++.|++... + -.-+...+.++.+++......+-.| ..+.|..+.|.++|+|.+-+|+.. +-
T Consensus 111 r~~~L~~a~~~~d~iviD~A--h---Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSic 185 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVA--N---GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVC 185 (343)
T ss_pred HHHHHHhcCCCCCEEEEECC--C---CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcc
Confidence 34445554 4777877554 1 1236889999999985333444456 899999999999999999887665 32
Q ss_pred --HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHH
Q psy8190 181 --KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 181 --e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l 228 (348)
+....+.. -......++.+.+++.|.++.++- | -.+.-|++..+
T Consensus 186 ttR~~~Gvg~-pqltAv~~~a~aa~~~~v~VIaDG--G-Ir~~gDI~KAL 231 (343)
T TIGR01305 186 TTRTKTGVGY-PQLSAVIECADAAHGLKGHIISDG--G-CTCPGDVAKAF 231 (343)
T ss_pred cCceeCCCCc-CHHHHHHHHHHHhccCCCeEEEcC--C-cCchhHHHHHH
Confidence 22222221 256677777777777777665441 1 13345555554
No 284
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.36 E-value=12 Score=34.35 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=72.5
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHHH-HhC
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRLK-KVG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~Lk-~aG 168 (348)
+..+.+.|+++|-+-|+ .-|...+.....++++..+..|+.+....|. .++|..+.+. +-|
T Consensus 90 i~~Ai~~GftSVM~DgS-~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 168 (284)
T PRK09195 90 IAQKVRSGVRSVMIDGS-HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATG 168 (284)
T ss_pred HHHHHHcCCCEEEeCCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHC
Confidence 44556779999988776 2333345556666666667677776653221 2445555555 569
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+|.+-+++.|.--.|+. .+..+++ +++.|+.. .++++ ++-|- |-..+++ ..+.+.+ +.-|.++
T Consensus 169 vD~LAvaiGt~HG~y~~-~p~Ld~~-~L~~I~~~--~~vPL---VLHGgSG~~~e~~----~~ai~~G--i~KiNi~ 232 (284)
T PRK09195 169 IDSLAVAIGTAHGMYKG-EPKLDFD-RLENIRQW--VNIPL---VLHGASGLPTKDI----QQTIKLG--ICKVNVA 232 (284)
T ss_pred cCEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCe---EEecCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 99999999986556653 3344555 33333332 35554 34455 5555554 4445666 5555544
No 285
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=89.16 E-value=5.3 Score=37.72 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHhcC--cEEEEecCCCC------H-HHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHH
Q psy8190 131 DLDNIENMICEVKKIG--LETCLTLGMLN------E-NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKN 201 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~~--~~i~~~~g~l~------~-e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~ 201 (348)
+...+.++++..++.+ ++++++.|... . ...+.+ ..|.+||.+|+... +--+.++.
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~~RIGHG~~~~--------------~dp~ll~~ 241 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNTKRIGHGFALP--------------KHPLLMDL 241 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCCCcCccccccC--------------cCHHHHHH
Confidence 4567778888888777 88888777543 2 334444 57888888887552 01244566
Q ss_pred HHHcCC--eee--EeEeeecCCCHHHHHHHHHHHHhcC
Q psy8190 202 VRNVGI--NIC--CGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 202 ~~~~G~--~i~--~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
+++.++ .+| ++++.|.-.+.++ .-+..+.+-+
T Consensus 242 l~~~~I~lEvCPtSN~~~~~v~~~~~--HPl~~ll~~G 277 (345)
T cd01321 242 VKKKNIAIEVCPISNQVLGLVSDLRN--HPAAALLARG 277 (345)
T ss_pred HHHcCCeEEECcchhhhhccccchhh--ChHHHHHHCC
Confidence 777665 444 4566665222221 2255555555
No 286
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.10 E-value=3.4 Score=33.52 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=50.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EE-EecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TC-LTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~-~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++|+++.+ .+..+.-|.+++- +..-...+.++++.+++.|.. +. +-.|.++++.+..|+++|++++..
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl----~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~- 121 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL----DGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFG- 121 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec----cchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeC-
Confidence 5788888765 4445666655442 112346778888888887654 33 456789999999999999999863
Q ss_pred CCC
Q psy8190 176 LDT 178 (348)
Q Consensus 176 ~et 178 (348)
..|
T Consensus 122 pgt 124 (143)
T COG2185 122 PGT 124 (143)
T ss_pred CCC
Confidence 344
No 287
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.08 E-value=16 Score=32.57 Aligned_cols=182 Identities=15% Similarity=0.061 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCccc------HHHHH-----HHHHHHHhc-CcEEE----EecCCCCHH-HH
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRD------LDNIE-----NMICEVKKI-GLETC----LTLGMLNEN-QA 161 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~------~~~~~-----~l~~~i~~~-~~~i~----~~~g~l~~e-~l 161 (348)
++++..+.++.+.+. +.-+-|+=...+|.... ..... ++++.+++. .+++. +|+...+.+ .+
T Consensus 16 ~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i 94 (244)
T PRK13125 16 NVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFL 94 (244)
T ss_pred CHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHH
Confidence 567777777766655 76665543322331111 11222 577777753 44443 244333444 48
Q ss_pred HHHHHhCCCeeecc---CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCC
Q psy8190 162 YRLKKVGLDYYNHN---LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g---~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~ 238 (348)
+.++++|++.+.+- +| ..++..+.++.++++|+... +.+....+.+.+...+ +..
T Consensus 95 ~~~~~~Gadgvii~dlp~e-------------~~~~~~~~~~~~~~~Gl~~~--~~v~p~T~~e~l~~~~----~~~--- 152 (244)
T PRK13125 95 NMARDVGADGVLFPDLLID-------------YPDDLEKYVEIIKNKGLKPV--FFTSPKFPDLLIHRLS----KLS--- 152 (244)
T ss_pred HHHHHcCCCEEEECCCCCC-------------cHHHHHHHHHHHHHcCCCEE--EEECCCCCHHHHHHHH----HhC---
Confidence 89999999999863 22 23456678899999999763 2333333344333332 232
Q ss_pred CeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 239 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 239 ~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
+.+-++.. .|||- .. -.....+.+...|...++..|.+..|-.+ ++.....+.+|||.++.|..+
T Consensus 153 ~~~l~msv--~~~~g-~~----~~~~~~~~i~~lr~~~~~~~i~v~gGI~~--~e~i~~~~~~gaD~vvvGSai 217 (244)
T PRK13125 153 PLFIYYGL--RPATG-VP----LPVSVERNIKRVRNLVGNKYLVVGFGLDS--PEDARDALSAGADGVVVGTAF 217 (244)
T ss_pred CCEEEEEe--CCCCC-CC----chHHHHHHHHHHHHhcCCCCEEEeCCcCC--HHHHHHHHHcCCCEEEECHHH
Confidence 22222233 34441 11 13345667777777776544544443222 344445578999999888654
No 288
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.98 E-value=15 Score=32.10 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=95.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++++.++.++.+.+.|++.+-++- .++ .-.+.++.+++....+.+-.| .++.+.++...++|.+.+-
T Consensus 22 r~~~~~~a~~i~~al~~~Gi~~iEitl--~~~------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv- 92 (212)
T PRK05718 22 VINKLEDAVPLAKALVAGGLPVLEVTL--RTP------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV- 92 (212)
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEEec--CCc------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE-
Confidence 346789999999999999999887652 222 244556666653334444445 5788999999999998654
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
.. +.+. +.++.+++.|+..-.+. -|+.++ ..+.+++ .+.+.+++ ...+
T Consensus 93 sP------------~~~~----~vi~~a~~~~i~~iPG~-----~TptEi----~~a~~~G--a~~vKlFP-----a~~~ 140 (212)
T PRK05718 93 SP------------GLTP----PLLKAAQEGPIPLIPGV-----STPSEL----MLGMELG--LRTFKFFP-----AEAS 140 (212)
T ss_pred CC------------CCCH----HHHHHHHHcCCCEeCCC-----CCHHHH----HHHHHCC--CCEEEEcc-----chhc
Confidence 11 1122 45667777777654442 366553 4456677 67776632 2211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
. . ...+...+-.+|+..+-.++|- + .+.-...+.+|+..+..|.
T Consensus 141 g-----g----~~~lk~l~~p~p~~~~~ptGGV-~--~~ni~~~l~ag~v~~vggs 184 (212)
T PRK05718 141 G-----G----VKMLKALAGPFPDVRFCPTGGI-S--PANYRDYLALPNVLCIGGS 184 (212)
T ss_pred c-----C----HHHHHHHhccCCCCeEEEeCCC-C--HHHHHHHHhCCCEEEEECh
Confidence 1 1 1344455556787555444442 1 2333445778854444444
No 289
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=88.94 E-value=13 Score=33.99 Aligned_cols=122 Identities=12% Similarity=0.214 Sum_probs=73.4
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC---------------CCCHHHHHHHH-HhCCCee
Q psy8190 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG---------------MLNENQAYRLK-KVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g---------------~l~~e~l~~Lk-~aG~~~i 172 (348)
.+.+.|+++|-+-|+ .-|...+.....++++..+..|+.+....| ..++|....+. +-|+|.+
T Consensus 95 ~ai~~GftSVM~DgS-~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L 173 (285)
T PRK07709 95 EAIDAGFTSVMIDAS-HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL 173 (285)
T ss_pred HHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE
Confidence 456779999988876 233344556666777777777777765322 13456655555 5799999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
-+++.|.--.|+. .+..+++ +++.|+. ..++++. +-|- |-..+++ ..+.+++ +.-|.+.
T Consensus 174 AvaiGt~HG~Y~~-~p~L~~~-~L~~I~~--~~~iPLV---LHGgSG~~~e~~----~~ai~~G--i~KiNi~ 233 (285)
T PRK07709 174 APALGSVHGPYKG-EPNLGFA-EMEQVRD--FTGVPLV---LHGGTGIPTADI----EKAISLG--TSKINVN 233 (285)
T ss_pred EEeecccccCcCC-CCccCHH-HHHHHHH--HHCCCEE---EeCCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 9999886566652 2344664 3333433 2366653 4455 5555554 4445566 5555544
No 290
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.86 E-value=6.8 Score=34.03 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=74.8
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++|+.+..++.+.+.|++.|-+.-- +| .-.+.++.+++...++.+-.| .++.++++...++|.+-+ +
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~IEITl~--sp------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fi-V 90 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPAIEITLR--TP------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI-V 90 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEecC--CC------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEE-E
Confidence 3467899999999999999998866422 22 234566666654335555566 689999999999998754 2
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+...++ +.++.+++.|+.+..+.+ |+-++.. +.+++ .+.+.|++
T Consensus 91 sP~~~~----------------ev~~~a~~~~ip~~PG~~-----TptEi~~----Ale~G--~~~lK~FP 134 (211)
T COG0800 91 SPGLNP----------------EVAKAANRYGIPYIPGVA-----TPTEIMA----ALELG--ASALKFFP 134 (211)
T ss_pred CCCCCH----------------HHHHHHHhCCCcccCCCC-----CHHHHHH----HHHcC--hhheeecC
Confidence 222222 347788889998877754 5655544 44555 45544443
No 291
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.78 E-value=12 Score=34.75 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=80.5
Q ss_pred CcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeeeEeEeee
Q psy8190 146 GLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIG 216 (348)
Q Consensus 146 ~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~~~~i~G 216 (348)
+.++.+....-+++ .++.+.++|+|.|.+++.. .+..-+.-.. ....+...+.++.+++ .++++.+-+-.|
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 34455555444443 3456667888888887765 2222221111 1255667777777766 477776665556
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHH
Q psy8190 217 LSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQA 296 (348)
Q Consensus 217 lget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~ 296 (348)
..++..+..+.+..+.+.+ ++.+.++.-.+. .....+. .+..+...+...+ ..+-..+|-.+ .+...
T Consensus 142 ~~~~~~~~~~~a~~l~~~G--~d~i~vh~r~~~-----~~~~~~~---~~~~i~~i~~~~~-ipvi~nGgI~~--~~da~ 208 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAG--AQAVTLHGRTRA-----QGYSGEA---NWDIIARVKQAVR-IPVIGNGDIFS--PEDAK 208 (319)
T ss_pred cCCCcchHHHHHHHHHHhC--CCEEEEEccccc-----ccCCCch---hHHHHHHHHHcCC-CcEEEeCCCCC--HHHHH
Confidence 6444445667777778887 788877543221 1111111 2344444444433 22222332222 23344
Q ss_pred HHH-HhCcceeeeC
Q psy8190 297 FCF-LAGANSIFYG 309 (348)
Q Consensus 297 ~~l-~~GAn~~~~~ 309 (348)
.++ ..||+.++.|
T Consensus 209 ~~l~~~gad~Vmig 222 (319)
T TIGR00737 209 AMLETTGCDGVMIG 222 (319)
T ss_pred HHHHhhCCCEEEEC
Confidence 455 5799999776
No 292
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=88.76 E-value=1.1 Score=39.69 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=100.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
-+|.+ .++.+.+.|++++++.+-+.. ......-.++++.+.+ .++++.+-.|..+.+.++.+.++|++++.+|-
T Consensus 29 ~dP~~---~a~~~~~~g~~~l~ivDLdaa--~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt 103 (229)
T PF00977_consen 29 GDPVE---VAKAFNEQGADELHIVDLDAA--KEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGT 103 (229)
T ss_dssp CCHHH---HHHHHHHTT-SEEEEEEHHHH--CCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred cCHHH---HHHHHHHcCCCEEEEEEccCc--ccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence 45544 445566789999999864211 1123445577777765 48999999999999999999999999999876
Q ss_pred CC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee----c-CC---CHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 177 DT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG----L-SE---SRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 177 et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G----l-ge---t~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
++ +++.++ +..+..-..-+-++.++--| . |- +.-+..+.++.+.+++ ...+-+..
T Consensus 104 ~~~~~~~~l~------------~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~td- 168 (229)
T PF00977_consen 104 EALEDPELLE------------ELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELG--AGEIILTD- 168 (229)
T ss_dssp HHHHCCHHHH------------HHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT---SEEEEEE-
T ss_pred HHhhchhHHH------------HHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcC--CcEEEEee-
Confidence 54 233333 22222222223344554444 1 21 2245677777888887 66764433
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+-..||-- .++. .++...+... +..+-+++|-.++ .+... ....|++.++.|.
T Consensus 169 i~~dGt~~----G~d~----~~~~~l~~~~-~~~viasGGv~~~-~Dl~~-l~~~G~~gvivg~ 221 (229)
T PF00977_consen 169 IDRDGTMQ----GPDL----ELLKQLAEAV-NIPVIASGGVRSL-EDLRE-LKKAGIDGVIVGS 221 (229)
T ss_dssp TTTTTTSS----S--H----HHHHHHHHHH-SSEEEEESS--SH-HHHHH-HHHTTECEEEESH
T ss_pred ccccCCcC----CCCH----HHHHHHHHHc-CCCEEEecCCCCH-HHHHH-HHHCCCcEEEEeh
Confidence 44566642 2332 2232222222 4345555554332 23333 3488998887653
No 293
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.59 E-value=15 Score=31.74 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=100.1
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..+.++....++.+.+.|++.+-++-. +| .-.+.++.+++....+.+-.| .++.+.++...++|.+.+-
T Consensus 11 r~~~~~~a~~ia~al~~gGi~~iEit~~--tp------~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv- 81 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGLPAIEITLR--TP------AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV- 81 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--Cc------cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 3467899999999999999998866432 22 234555556543334555555 6789999999999998543
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.-.++ +.++.+++.|+.+-.+.+ |+.|+... .+++ .+.+.++| .+.+
T Consensus 82 SP~~~~----------------~vi~~a~~~~i~~iPG~~-----TptEi~~A----~~~G--a~~vK~FP-----a~~~ 129 (201)
T PRK06015 82 SPGTTQ----------------ELLAAANDSDVPLLPGAA-----TPSEVMAL----REEG--YTVLKFFP-----AEQA 129 (201)
T ss_pred CCCCCH----------------HHHHHHHHcCCCEeCCCC-----CHHHHHHH----HHCC--CCEEEECC-----chhh
Confidence 222222 346778899988766644 67766544 4566 66766654 2221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.. .+.+...+-.+|+..+-.++|- + .+.-...|.+|+.....|..+
T Consensus 130 GG---------~~yikal~~plp~~~l~ptGGV-~--~~n~~~~l~ag~~~~~ggs~l 175 (201)
T PRK06015 130 GG---------AAFLKALSSPLAGTFFCPTGGI-S--LKNARDYLSLPNVVCVGGSWV 175 (201)
T ss_pred CC---------HHHHHHHHhhCCCCcEEecCCC-C--HHHHHHHHhCCCeEEEEchhh
Confidence 10 1344555667887554444432 1 222334577877766555544
No 294
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=88.53 E-value=9.1 Score=36.50 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=62.3
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE------ecC-CC--CHHHHHHH
Q psy8190 94 ATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL------TLG-ML--NENQAYRL 164 (348)
Q Consensus 94 ~~~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~------~~g-~l--~~e~l~~L 164 (348)
.|+..+-+-|..-++...+.|++.|.+-+.- -+...+...++.+++.|.++.. +|- ++ -.+.++.|
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAl-----ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel 165 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDAL-----NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKEL 165 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechhc-----cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHH
Confidence 4554444444555777888999999886652 1456778888888887665432 221 11 12678889
Q ss_pred HHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCe
Q psy8190 165 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGIN 208 (348)
Q Consensus 165 k~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~ 208 (348)
.+.|+|+|.+- .+..-.++....+.++.+++ .+++
T Consensus 166 ~~~g~DSIciK---------DmaGlltP~~ayelVk~iK~~~~~p 201 (472)
T COG5016 166 LEMGVDSICIK---------DMAGLLTPYEAYELVKAIKKELPVP 201 (472)
T ss_pred HHcCCCEEEee---------cccccCChHHHHHHHHHHHHhcCCe
Confidence 99999999862 22222355555556666655 3443
No 295
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=88.35 E-value=28 Score=34.54 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc---CcEEEEec--C-CCCHHHHHHHHHhCCCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCLTL--G-MLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~--g-~l~~e~l~~Lk~aG~~~ 171 (348)
.+++.+++.++.+.+.|+..|+|.+-. ....+..+.++++.+++. ++++.++. . -+.-...-.-.++|++.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkDta---Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~ 228 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKDMA---ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCc---cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence 478888999999999999999996641 124567888888888863 35554432 1 23333344456789998
Q ss_pred eeccCCCCHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHh----cCCCCCeeecccc
Q psy8190 172 YNHNLDTSPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN----LNPYPESVPINNL 246 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~----l~~~~~~i~~~~l 246 (348)
+...+..- .-++++ ..++.+.++ +..|+.+..++ +...++.+.+..++. +......+....+
T Consensus 229 vDtai~Gl-----g~~aGn~atE~vv~~L---~~~g~~tgiDl-----~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~ 295 (499)
T PRK12330 229 VDTAISSM-----SLGPGHNPTESLVEML---EGTGYTTKLDM-----DRLLKIRDHFKKVRPKYKEFESKTTGVETEIF 295 (499)
T ss_pred EEeecccc-----cccccchhHHHHHHHH---HhcCCCCCCCH-----HHHHHHHHHHHHHHHHHhcccccccCCCCccc
Confidence 87655431 111222 445554444 44566543331 111222223333322 2111122333444
Q ss_pred cc-cCCCCCCCC-------CCCC-HHHHHHHHHHHHHHCCCC
Q psy8190 247 VQ-IKGTPLYGS-------SILD-PLEFIRTIAVARITMPTS 279 (348)
Q Consensus 247 ~P-~~gT~l~~~-------~~~~-~~~~~~~~a~~R~~lp~~ 279 (348)
.+ .||--+.+. ...+ .+++++.+...|..+...
T Consensus 296 ~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~ 337 (499)
T PRK12330 296 KSQIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYP 337 (499)
T ss_pred cCCCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCC
Confidence 44 677666542 1122 357788888899887664
No 296
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=88.35 E-value=3.9 Score=35.38 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++.+++...++.+.+.|++.|-.++|.. +...+++.+..+.+.++ ..+.+-++.|.-+.+.+..|.++|.+|+.
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~-~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFG-PGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 4567777777777778888777665532 23345555555545444 34666677777788888888888887764
No 297
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=88.30 E-value=10 Score=32.73 Aligned_cols=163 Identities=17% Similarity=0.086 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
..+.++....++.+.+.|++.+-++-- ++ ...+.++.+++....+.+-.| .++.+.++...++|.+.+- +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~--t~------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv-S 86 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLR--TP------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV-S 86 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETT--ST------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE-E
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecC--Cc------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE-C
Confidence 457889999999999999998877543 22 234555555553233444455 6789999999999998653 2
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCC
Q psy8190 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 255 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~ 255 (348)
. . --.+.++.++++|+.+..+.+ |+.|+... .+++ .+.+.++|- ..+.
T Consensus 87 P------------~----~~~~v~~~~~~~~i~~iPG~~-----TptEi~~A----~~~G--~~~vK~FPA-----~~~G 134 (196)
T PF01081_consen 87 P------------G----FDPEVIEYAREYGIPYIPGVM-----TPTEIMQA----LEAG--ADIVKLFPA-----GALG 134 (196)
T ss_dssp S------------S------HHHHHHHHHHTSEEEEEES-----SHHHHHHH----HHTT---SEEEETTT-----TTTT
T ss_pred C------------C----CCHHHHHHHHHcCCcccCCcC-----CHHHHHHH----HHCC--CCEEEEecc-----hhcC
Confidence 2 1 122457788999998877755 77776554 4566 666665543 2221
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 256 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 256 ~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
.. +.+...+-.+|+..+-.++|- + .+.-...+.+|+..+..|..+
T Consensus 135 ------G~---~~ik~l~~p~p~~~~~ptGGV-~--~~N~~~~l~ag~~~vg~Gs~L 179 (196)
T PF01081_consen 135 ------GP---SYIKALRGPFPDLPFMPTGGV-N--PDNLAEYLKAGAVAVGGGSWL 179 (196)
T ss_dssp ------HH---HHHHHHHTTTTT-EEEEBSS-----TTTHHHHHTSTTBSEEEESGG
T ss_pred ------cH---HHHHHHhccCCCCeEEEcCCC-C--HHHHHHHHhCCCEEEEECchh
Confidence 11 334445556777544334432 2 222344678999888766644
No 298
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=88.30 E-value=19 Score=32.42 Aligned_cols=181 Identities=12% Similarity=0.073 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
++.++.+.+.|++++++..-..... ....-.++++.+.+ .++++.+..|.-+.+.++.+.++|++++-+|-..
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~---- 106 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKR--GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAA---- 106 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcC--CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHH----
Confidence 4445567788999998876421111 11122445555544 4678888889999999999999999999887432
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeee-----------c-CCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-----------L-SESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~G-----------l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
++ +.+.+.+..+...+.-+.++.++--| - ..+..+..+.+..+.+++ +..+.+.... ..
T Consensus 107 ~~------~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g--~~~ii~~~i~-~~ 177 (258)
T PRK01033 107 LE------DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALG--AGEILLNSID-RD 177 (258)
T ss_pred hc------CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcC--CCEEEEEccC-CC
Confidence 21 12223333333321124445554333 1 123334566667777777 6776655432 23
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHH-HhCcceeeeCC
Q psy8190 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCF-LAGANSIFYGD 310 (348)
Q Consensus 251 gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l-~~GAn~~~~~~ 310 (348)
||- ..++.+ .+..++.. .+..+-+++|-.+. .+.. .++ ..|++.++.|.
T Consensus 178 G~~----~G~d~~----~i~~~~~~-~~ipvIasGGv~s~-eD~~-~l~~~~GvdgVivg~ 227 (258)
T PRK01033 178 GTM----KGYDLE----LLKSFRNA-LKIPLIALGGAGSL-DDIV-EAILNLGADAAAAGS 227 (258)
T ss_pred CCc----CCCCHH----HHHHHHhh-CCCCEEEeCCCCCH-HHHH-HHHHHCCCCEEEEcc
Confidence 432 122322 22222322 23334455543332 2333 345 68999997664
No 299
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.25 E-value=11 Score=34.60 Aligned_cols=121 Identities=16% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC---------------CHHHHHH-HHHhCCCee
Q psy8190 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML---------------NENQAYR-LKKVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l---------------~~e~l~~-Lk~aG~~~i 172 (348)
.+.+.|+++|-+.|+ ..|...+.+...++++..+..|+.+...+|.+ +++.+.. ..+-|+|.+
T Consensus 92 ~Ai~~GftSVM~DgS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~L 170 (283)
T PRK07998 92 QAVRAGFTSVMIDGA-ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDML 170 (283)
T ss_pred HHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCee
Confidence 445779999988765 22322455666677777777787776543322 4445444 456799999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
-+++.|.--.|+. ++.+++ +++.|+.. .++++. +-|- |-..+++ +.+.+.+ +.-|.+.
T Consensus 171 AvaiGt~HG~Y~~--p~l~~~-~l~~I~~~--~~vPLV---lHGgSG~~~e~~----~~ai~~G--i~KiNi~ 229 (283)
T PRK07998 171 AVSIGNVHGLEDI--PRIDIP-LLKRIAEV--SPVPLV---IHGGSGIPPEIL----RSFVNYK--VAKVNIA 229 (283)
T ss_pred ehhccccccCCCC--CCcCHH-HHHHHHhh--CCCCEE---EeCCCCCCHHHH----HHHHHcC--CcEEEEC
Confidence 9999885556653 444453 33333322 244443 3455 5555555 4445566 5555544
No 300
>PTZ00124 adenosine deaminase; Provisional
Probab=88.00 E-value=8.7 Score=36.51 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCcEEEEecCCC----C-HHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCC
Q psy8190 133 DNIENMICEVKKIGLETCLTLGML----N-ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 207 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~~~g~l----~-~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~ 207 (348)
..+.++++..++.|+.++++.|.. + .+..+.+...|.+||.+|+... +-.+.++.+++.|+
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~--------------~d~~l~~~l~~~~I 271 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA--------------ESQELIDMVKEKDI 271 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC--------------CCHHHHHHHHHcCC
Confidence 446666666776677777766642 1 2345556666777777776541 11234666777665
Q ss_pred --eee--EeEeeecCCCHHHHHHHHHHHHhcC
Q psy8190 208 --NIC--CGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 208 --~i~--~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
.+| +++..|.-.+.++ .-+..+.+.+
T Consensus 272 ~lEvCPtSN~~~~~v~~~~~--HPi~~l~~~G 301 (362)
T PTZ00124 272 LLEVCPISNVLLNNAKSMDT--HPIRKLYDAG 301 (362)
T ss_pred eEEECCcchhhhhcCCchhh--HHHHHHHHCC
Confidence 444 5666665333322 2355555555
No 301
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=87.95 E-value=1.6 Score=38.55 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEec---------cCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGA---------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~g---------g~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+|+++.+...+ ...++|+- ||.+. ....+.+.++++.+++.|+.+++-.. -+.+.++.-++.|++
T Consensus 73 t~e~~~ia~~~k---P~~vtLVPE~r~e~TTegGldv-~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~Gad 147 (239)
T PF03740_consen 73 TEEMVDIALKVK---PDQVTLVPEKREELTTEGGLDV-AGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKELGAD 147 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-T-CGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHTT-S
T ss_pred CHHHHHHHHhCC---cCEEEECCCCCCCcCCCcCChh-hcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHcCCC
Confidence 467777665554 46777762 11122 23578999999999999988876543 457899999999999
Q ss_pred eeeccCCCCHHHHhccCCCCC--HHHHHHHHHHHHHcCCeeeEeEeeec-CCCHH
Q psy8190 171 YYNHNLDTSPKLYGDIISTRD--YENRLNTLKNVRNVGINICCGGIIGL-SESRD 222 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~--~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e 222 (348)
+|.+.-+.-.+.+..-..... ++...++.+.+++.|+.++++ -|| .++..
T Consensus 148 ~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~VnAG--HgL~y~N~~ 200 (239)
T PF03740_consen 148 RVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVNAG--HGLNYDNVR 200 (239)
T ss_dssp EEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE--TT--TTTHH
T ss_pred EEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEecC--CCCCHHHHH
Confidence 998744321122211000011 466778888889999998876 444 44443
No 302
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.86 E-value=13 Score=32.69 Aligned_cols=169 Identities=17% Similarity=0.096 Sum_probs=101.8
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..+.++....++.+.+.|++.+-++-- +| ...+.+.++.+..++....+.+-.| .++.+.++...++|.+.+ +
T Consensus 22 r~~~~~~a~~~~~al~~gGi~~iEiT~~--tp--~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-V 96 (222)
T PRK07114 22 YHADVEVAKKVIKACYDGGARVFEFTNR--GD--FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-V 96 (222)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--CC--cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE-E
Confidence 3467899999999999999998766432 22 2345555555555544345655555 678999999999998754 2
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+.-.++ +.++.+++.|+.+-.+.+ |+.|+... .+++ .+.+.++|-. .+
T Consensus 97 sP~~~~----------------~v~~~~~~~~i~~iPG~~-----TpsEi~~A----~~~G--a~~vKlFPA~-----~~ 144 (222)
T PRK07114 97 TPLFNP----------------DIAKVCNRRKVPYSPGCG-----SLSEIGYA----EELG--CEIVKLFPGS-----VY 144 (222)
T ss_pred CCCCCH----------------HHHHHHHHcCCCEeCCCC-----CHHHHHHH----HHCC--CCEEEECccc-----cc
Confidence 322222 346778888988766644 67666544 4566 6666665521 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. ...+...+-.+|+..+-.++|- +...+.-...+.+||..+-.|..+
T Consensus 145 ------G----~~~ikal~~p~p~i~~~ptGGV-~~~~~n~~~yl~aGa~avg~Gs~L 191 (222)
T PRK07114 145 ------G----PGFVKAIKGPMPWTKIMPTGGV-EPTEENLKKWFGAGVTCVGMGSKL 191 (222)
T ss_pred ------C----HHHHHHHhccCCCCeEEeCCCC-CcchhcHHHHHhCCCEEEEEChhh
Confidence 0 1234445555777544444432 221012233467999888656654
No 303
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=87.79 E-value=5.4 Score=37.54 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=56.3
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCC--CcccHHHHHHHHHHHHhcCcEEEEecC--CCCHHHHHHHHHhCCCe
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWREL--KDRDLDNIENMICEVKKIGLETCLTLG--MLNENQAYRLKKVGLDY 171 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~--~~~~~~~~~~l~~~i~~~~~~i~~~~g--~l~~e~l~~Lk~aG~~~ 171 (348)
+.++++.+.++++......-+.+ +|.+-.+ ...+.+.+.++.+..++.++.++.+.| .-++-....+...|++|
T Consensus 148 r~~~~e~~~~~~~~a~~~~~~~~--~~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~r 225 (345)
T COG1816 148 RHLGFESADEELELALRYRDKLV--TGVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAER 225 (345)
T ss_pred eecCHHHHHHHHHHHhhcccccC--ccCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchhh
Confidence 45677888777776654322222 1221111 235678899999999999999999988 34456677888889999
Q ss_pred eeccCCC
Q psy8190 172 YNHNLDT 178 (348)
Q Consensus 172 i~~g~et 178 (348)
|.+|+..
T Consensus 226 I~HGi~~ 232 (345)
T COG1816 226 IGHGIRA 232 (345)
T ss_pred hcccccc
Confidence 9999977
No 304
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=87.76 E-value=19 Score=33.01 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=72.0
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---------------CCHHHHHHHH-HhCCCee
Q psy8190 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---------------LNENQAYRLK-KVGLDYY 172 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---------------l~~e~l~~Lk-~aG~~~i 172 (348)
.+.+.|+++|-+-|+ .-|...+.....++++..+..++.+....|. .++|..+.+. +-|+|.+
T Consensus 95 ~ai~~GftSVM~DgS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~L 173 (286)
T PRK08610 95 EAIDAGFTSVMIDAS-HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDAL 173 (286)
T ss_pred HHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEE
Confidence 456779999988876 2333345556666677777777777654321 2456665555 5699999
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
-+++.|.--.|+. .|.-+++ +++.|+.. .++++. +-|- |-..+++ ..+.+.+ +.-|.++
T Consensus 174 AvaiGt~HG~Y~~-~p~Ld~~-~L~~I~~~--~~vPLV---LHGgSG~~~e~~----~~ai~~G--I~KiNi~ 233 (286)
T PRK08610 174 APALGSVHGPYKG-EPKLGFK-EMEEIGLS--TGLPLV---LHGGTGIPTKDI----QKAIPFG--TAKINVN 233 (286)
T ss_pred EeeccccccccCC-CCCCCHH-HHHHHHHH--HCCCEE---EeCCCCCCHHHH----HHHHHCC--CeEEEec
Confidence 9999886566652 2334555 33334332 366553 4455 5555554 4445566 5555544
No 305
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=24 Score=32.83 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCc---ccHHHHHHHHHHHHhcCcEEEE--ecCC-----CCHHHHHHHHHhCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEVKKIGLETCL--TLGM-----LNENQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~~~l~~~i~~~~~~i~~--~~g~-----l~~e~l~~Lk~aG~ 169 (348)
.++-.+.++.+.+.|++.|+.+=. .|.. .-...+.++++..++.++.+.+ +|.. .+...+..+++.|+
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~--~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLL--IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecc--cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 467777888889999999866443 1211 2356788888888888887665 5543 35578999999999
Q ss_pred CeeeccCCC
Q psy8190 170 DYYNHNLDT 178 (348)
Q Consensus 170 ~~i~~g~et 178 (348)
+.+-+....
T Consensus 93 ~glRlD~gf 101 (360)
T COG3589 93 DGLRLDYGF 101 (360)
T ss_pred hheeecccC
Confidence 988875544
No 306
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=87.50 E-value=20 Score=31.89 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--cc--------------HHHHHHHHHHHHhc-CcEEEE----ecCCC-
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD--RD--------------LDNIENMICEVKKI-GLETCL----TLGML- 156 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~--~~--------------~~~~~~l~~~i~~~-~~~i~~----~~g~l- 156 (348)
+.+...+.++.+.+.|+..+.++=-..+|.- .. .+...++++.+++. .+++.+ |+-.-
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 5678888888898999999988621111110 01 12567778888763 444443 22111
Q ss_pred -CHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy8190 157 -NENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 157 -~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
.+..++.++++|++.+.+.= -.+++..+.++.++++|+....- +. -.|..++++.+ .+..
T Consensus 92 G~~~fi~~~~~aG~~giiipD-------------l~~ee~~~~~~~~~~~g~~~i~~--i~-P~T~~~~i~~i---~~~~ 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD-------------LPPEEAEEFREAAKEYGLDLIFL--VA-PTTPDERIKKI---AELA 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC-------------CCHHHHHHHHHHHHHcCCcEEEE--eC-CCCCHHHHHHH---HhhC
Confidence 15679999999999887521 12457778899999999875322 22 34444443333 3322
Q ss_pred CCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCe
Q psy8190 236 PYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 311 (348)
Q Consensus 236 ~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~ 311 (348)
.+.+-+.... |+|.-...-. ....+.+...|.. .+..|.+..|-.+ ++.......+ ||.++.|..
T Consensus 153 --~~~vy~~s~~--g~tG~~~~~~---~~~~~~i~~lr~~-~~~pI~vggGI~~--~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 153 --SGFIYYVSRT--GVTGARTELP---DDLKELIKRIRKY-TDLPIAVGFGIST--PEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred --CCCEEEEeCC--CCCCCccCCC---hhHHHHHHHHHhc-CCCcEEEEccCCC--HHHHHHHHcc-CCEEEECHH
Confidence 3455444444 3343221111 2345555666654 3434444332211 3233445667 999988753
No 307
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=87.45 E-value=3.6 Score=35.89 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
++.+++...++.+.+.|++.|-.++|. .+...+.+.+..+.+.+.. .+.+-++.|..+.+.+..|.++|.+|+.
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf-~~~gat~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riG 202 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGF-GAGGATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIG 202 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCC-CCCCCCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhC
Confidence 444555555555555566655554442 1222333443333333332 3455555666666666666666666553
No 308
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=87.31 E-value=16 Score=33.46 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=71.0
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-----------------CCCHHHHHHHH-HhCC
Q psy8190 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-----------------MLNENQAYRLK-KVGL 169 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-----------------~l~~e~l~~Lk-~aG~ 169 (348)
..+.+.|+++|-+-|+ ..|...+.....++++..+..++.+....| ..+++..+.+. +-|+
T Consensus 91 ~~ai~~GFtSVM~DgS-~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~Tgv 169 (286)
T PRK12738 91 RRKVHAGVRSAMIDGS-HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGV 169 (286)
T ss_pred HHHHHcCCCeEeecCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCC
Confidence 3455779999988776 233344555666677777766776664322 12455666555 4699
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|.+-+++.|.--.|+. .|..+++ +++.|+.. .++++ ++-|- |-..+++ ..+.+++ +.-|.+.
T Consensus 170 D~LAvaiGt~HG~Y~~-~p~Ldfd-~l~~I~~~--~~vPL---VLHGgSG~~~e~~----~kai~~G--I~KiNi~ 232 (286)
T PRK12738 170 DSLAVAIGTAHGLYSK-TPKIDFQ-RLAEIREV--VDVPL---VLHGASDVPDEFV----RRTIELG--VTKVNVA 232 (286)
T ss_pred CEEEeccCcccCCCCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 9999999986555552 2334544 33333322 35554 34455 5555554 4445666 5555543
No 309
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=87.23 E-value=5.7 Score=34.95 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.+++.+.++.+.+.|++.|--++|. .+.....+.+.-+.+.+. ..+.+-.+.|..+.+.+..|.++|.+++..+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~-~~~gat~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS-- 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF-STGGATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTS-- 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCCCCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccC--
Confidence 677888777777778888866555552 223344555544444443 2466777888888888888889998887531
Q ss_pred CCHHHHhcc
Q psy8190 178 TSPKLYGDI 186 (348)
Q Consensus 178 t~~e~l~~i 186 (348)
+..++++..
T Consensus 209 ~~~~i~~~~ 217 (221)
T PRK00507 209 AGVAILKGL 217 (221)
T ss_pred cHHHHHhcc
Confidence 135555543
No 310
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.17 E-value=3.2 Score=38.95 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCEE-EEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHH
Q psy8190 102 SVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAY 162 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i-~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~ 162 (348)
.+.+.++.+++.|...+ .+... ...+.+++.++++.+.+.+.. +++ +.|.++++.+.
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s----~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~ 175 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMS----HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVR 175 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcc----cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHH
Confidence 34444555566665432 22222 123456666666666665432 222 45666655443
No 311
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=87.04 E-value=18 Score=33.05 Aligned_cols=124 Identities=13% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHH-HHHhC
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYR-LKKVG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~-Lk~aG 168 (348)
+..+.+.|+++|-+-|+ ..|...+.+...++++..+..|+.+....|. .+++.++. .++-|
T Consensus 88 i~~ai~~GFtSVM~DgS-~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 166 (282)
T TIGR01858 88 IRQKVHAGVRSAMIDGS-HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATG 166 (282)
T ss_pred HHHHHHcCCCEEeecCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHC
Confidence 34566779999988776 2333445556666666667677776653221 13344444 44679
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+|.+-+++.|.--.|+. .|..+++. ++.|+.. .++++ ++-|- |-..+++ ..+.+++ +.-|.+.
T Consensus 167 vD~LAvaiGt~HG~yk~-~p~Ldf~~-L~~I~~~--~~iPL---VlHGgSG~~~e~~----~~ai~~G--i~KiNi~ 230 (282)
T TIGR01858 167 VDSLAVAIGTAHGLYKK-TPKLDFDR-LAEIREV--VDVPL---VLHGASDVPDEDV----RRTIELG--ICKVNVA 230 (282)
T ss_pred cCEEecccCccccCcCC-CCccCHHH-HHHHHHH--hCCCe---EEecCCCCCHHHH----HHHHHcC--CeEEEeC
Confidence 99999999886556653 33445553 3333322 35554 34455 5555554 4445666 5555543
No 312
>PLN02591 tryptophan synthase
Probab=86.90 E-value=17 Score=32.64 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=52.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCC------------------------CC-cccHHHHHHHHHHHHh-cCcEEE
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRE------------------------LK-DRDLDNIENMICEVKK-IGLETC 150 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~------------------------~~-~~~~~~~~~l~~~i~~-~~~~i~ 150 (348)
.+++||..+..+.+.+.|+..|.+..-.++ .. ....+.+.++++.+++ .+.++.
T Consensus 114 DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 114 DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 367777777777777777777666532111 00 0113456777777776 367777
Q ss_pred EecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 151 LTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 151 ~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+-.|.-+++.++.+.++|.|.+-+|
T Consensus 194 vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 194 VGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred EeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 7778888888888888888887754
No 313
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=86.83 E-value=22 Score=32.52 Aligned_cols=123 Identities=19% Similarity=0.295 Sum_probs=71.2
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHH-HHhCC
Q psy8190 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRL-KKVGL 169 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~L-k~aG~ 169 (348)
..+.+.|+++|-+-|+ .-|...+.+...++++..+..++.+....|. .+++..+.+ ++-|+
T Consensus 91 ~~ai~~GftSVM~DgS-~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~Tgv 169 (284)
T PRK12857 91 MKCIRNGFTSVMIDGS-KLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGV 169 (284)
T ss_pred HHHHHcCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCC
Confidence 3445679999988876 2333445566667777777777776653221 244555555 45699
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|.+-+++.|.--.|+. .+..+++ +++.++.. .++++ ++-|- |-..+++. .+.+++ +.-|.++
T Consensus 170 D~LAvaiGt~HG~y~~-~p~Ld~~-~L~~i~~~--~~vPL---VlHGgSG~~~e~~~----~ai~~G--i~KiNi~ 232 (284)
T PRK12857 170 DALAIAIGTAHGPYKG-EPKLDFD-RLAKIKEL--VNIPI---VLHGSSGVPDEAIR----KAISLG--VRKVNID 232 (284)
T ss_pred CEEeeccCccccccCC-CCcCCHH-HHHHHHHH--hCCCE---EEeCCCCCCHHHHH----HHHHcC--CeEEEeC
Confidence 9999999886556653 2334554 33333332 24444 45555 65655544 344565 5555443
No 314
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=86.75 E-value=6.3 Score=34.68 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c-CcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 98 LSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.+.+++...+..+.+ .|.+-||+-.|+......+. ++++.+++ . ++++.+-.|..+.+.++.+.++|+|++-+
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~----e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVV 207 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPP----ELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVT 207 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCH----HHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 467788877776666 59999999644222222223 33444443 2 57788888999999999999999999987
Q ss_pred c
Q psy8190 175 N 175 (348)
Q Consensus 175 g 175 (348)
|
T Consensus 208 G 208 (223)
T TIGR01768 208 G 208 (223)
T ss_pred C
Confidence 5
No 315
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=86.70 E-value=2.7 Score=37.08 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+|+++.+... ....++|+-. |.+. ....+.+.++++.+++.|+.+++=. .-+.+.++.-++.|.+
T Consensus 75 ~~em~~ia~~~---kP~~vtLVPE~r~E~TTegGldv-~~~~~~l~~~i~~L~~~gIrVSLFi-dP~~~qi~~A~~~GAd 149 (239)
T PRK05265 75 TEEMLDIALEV---KPHQVTLVPEKREELTTEGGLDV-AGQFDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGAD 149 (239)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCccCCccchh-hcCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 46677665544 4556666521 1111 2356789999999999998887655 4678999999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHH
Q psy8190 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE 226 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~ 226 (348)
+|.+.-+.-.+.+.. ......+.+..+.+.+++.|+.++++ +|=+++.+..
T Consensus 150 ~VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~VnAG----HgLny~Nv~~ 200 (239)
T PRK05265 150 RIELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVNAG----HGLNYHNVKP 200 (239)
T ss_pred EEEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEecC----CCCCHHhHHH
Confidence 998865441111211 11224667777788888889888764 5556555443
No 316
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=86.67 E-value=16 Score=32.07 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CC-CHHHHHHHHHhCCCeeeccCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-ML-NENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l-~~e~l~~Lk~aG~~~i~~g~e 177 (348)
.+-+.+.++.+++.|+..|+++.-. .....+.+.+.++++.....++.++--.. .. ..+.++.|.+.|+.||.-+=+
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt-~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg 150 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALT-ADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGG 150 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeec-CCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCC
Confidence 4455666777889999999887652 23356778888887776644444432222 12 447899999999999873211
Q ss_pred CCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHH
Q psy8190 178 TSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELI 228 (348)
Q Consensus 178 t~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l 228 (348)
. .+..+-++.++.+-+ ++ -...+|.|-|=+.+.+.+..
T Consensus 151 ~-----------~sa~eg~~~l~~li~~a~--gri~Im~GaGV~~~N~~~l~ 189 (241)
T COG3142 151 K-----------ASALEGLDLLKRLIEQAK--GRIIIMAGAGVRAENIAELV 189 (241)
T ss_pred c-----------CchhhhHHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHH
Confidence 1 222333333333322 22 23456788887777665543
No 317
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.57 E-value=25 Score=31.91 Aligned_cols=185 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC---CCCCc---ccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAW---RELKD---RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~---~~~~~---~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+.+++.++.+++.|+.-+ ..+.. ++|.. ...+.+..+.+..++.|+.+.+. ..+.+.++.+.+. ++.+
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~-r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te--~~d~~~~~~l~~~-vd~~ 114 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHML-RGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTE--VMDTRDVEEVADY-ADML 114 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEe--eCChhhHHHHHHh-CCEE
Confidence 57888999999999888744 33321 11111 12334444444445568887544 4677778888888 8888
Q ss_pred eccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 173 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 173 ~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.++--+ .+ ...++.+.+.|.+|. +=-|..-+.+++...++.+..-+ ...+.+ -..|
T Consensus 115 kIga~~~~n---------------~~LL~~~a~~gkPV~--lk~G~~~s~~e~~~A~e~i~~~G--n~~i~L----~~rG 171 (266)
T PRK13398 115 QIGSRNMQN---------------FELLKEVGKTKKPIL--LKRGMSATLEEWLYAAEYIMSEG--NENVVL----CERG 171 (266)
T ss_pred EECcccccC---------------HHHHHHHhcCCCcEE--EeCCCCCCHHHHHHHHHHHHhcC--CCeEEE----EECC
Confidence 876533 11 122333434455432 12233447888888888888766 333322 2345
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHCCCC-ceecc--ccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 252 TP-LYGSSILDPLEFIRTIAVARITMPTS-RIRMS--AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 252 T~-l~~~~~~~~~~~~~~~a~~R~~lp~~-~i~~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
++ +.+++ ...-.+..+...|...+-. .+..+ .|+..+.......++.+||++++.+..+
T Consensus 172 ~~t~~~Y~--~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 172 IRTFETYT--RNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred CCCCCCCC--HHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 53 22333 2233455555555443211 11112 2211222556777899999999876544
No 318
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=86.39 E-value=13 Score=33.84 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC---------CcccHHHHHHHHHHHHhcCcEEEE--ecCC---------CC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL---------KDRDLDNIENMICEVKKIGLETCL--TLGM---------LN 157 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~---------~~~~~~~~~~l~~~i~~~~~~i~~--~~g~---------l~ 157 (348)
.+.+...+.++.+.+.|+..+++-.|+... ...+...+.++++..++.++.+.+ +-.. -.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 688999999999999999999998887421 112346899999999998865543 2111 12
Q ss_pred HHHHHHHHHhCCCeeecc-CCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE
Q psy8190 158 ENQAYRLKKVGLDYYNHN-LDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG 213 (348)
Q Consensus 158 ~e~l~~Lk~aG~~~i~~g-~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~ 213 (348)
++.++.+++.|+..|-++ +++ +++. .+-..+.++.|.++.+-|..|-
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~~~d~Q~~---------v~~y~~i~~~AA~~~LmvnfHg 157 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFMDRDDQEM---------VNWYEDILEDAAEYKLMVNFHG 157 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE--SSTSHHH---------HHHHHHHHHHHHHTT-EEEETT
T ss_pred HHHHHHHHHcCCCEEeeCcCCCCCHHH---------HHHHHHHHHHHHHcCcEEEecC
Confidence 788999999999999987 444 3333 3355677888888888776553
No 319
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.16 E-value=20 Score=30.51 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=98.7
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 96 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 96 ~~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+..++++....++.+.+.|++.|-+.-. ++ .-.+.++.+++....+.+-.| .++.+.++...++|.+.+..
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~--~~------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLR--TP------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCC--Ch------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 3457899999999999999998877543 21 133466666664223444555 45699999999999998853
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
+ +++ .+.++.+++.|..+ ++|.. |.++..+. .+.+ .+.+.+++ .++
T Consensus 83 p-~~~----------------~~~~~~~~~~~~~~----i~gv~-t~~e~~~A----~~~G--ad~i~~~p-----~~~- 128 (190)
T cd00452 83 P-GLD----------------PEVVKAANRAGIPL----LPGVA-TPTEIMQA----LELG--ADIVKLFP-----AEA- 128 (190)
T ss_pred C-CCC----------------HHHHHHHHHcCCcE----ECCcC-CHHHHHHH----HHCC--CCEEEEcC-----Ccc-
Confidence 2 222 23556666677643 55654 66665444 3566 88888642 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. .. +.+...+..+|+..+-+.+|- ..+.-...+.+||+.+..+.-+
T Consensus 129 -----~-g~---~~~~~l~~~~~~~p~~a~GGI---~~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 129 -----V-GP---AYIKALKGPFPQVRFMPTGGV---SLDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred -----c-CH---HHHHHHHhhCCCCeEEEeCCC---CHHHHHHHHHCCCEEEEEchhc
Confidence 1 12 233344555666444344432 2333445688999999666533
No 320
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=86.12 E-value=27 Score=31.94 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=101.1
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.+.+...++.+.+.+..-|.-.+.+ .....+.+.+..++....+ ..+++.++.. ..+.+.++..-++|++.|-+.
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~-~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEV-RLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcc-hhccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 456666666666666665544333221 2223456667767665544 5778888776 457789999999999988764
Q ss_pred CCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE-eee-------c-CCCHHHHHHHHHHHHhcCCCCCeeec--
Q psy8190 176 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG-IIG-------L-SESRDQRAELIFQLANLNPYPESVPI-- 243 (348)
Q Consensus 176 ~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~-i~G-------l-get~e~~~~~l~~l~~l~~~~~~i~~-- 243 (348)
--+ +. ....+...+..+.+++.|..+...+ -+| . |.+..+..+..++..+.+ +|.+.+
T Consensus 105 ~s~~~~--------~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg--~DyLAvai 174 (281)
T PRK06806 105 GSHLPL--------EENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD--VDALAVAI 174 (281)
T ss_pred CCCCCH--------HHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC--CCEEEEcc
Confidence 322 11 1133455667788888898765432 222 0 111122333344455566 788877
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceee
Q psy8190 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF 307 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~ 307 (348)
.+.++.. + ..+..+.+.+.++-.... +|= +-. +| ..+..+.-..++.+|++.+-
T Consensus 175 G~~hg~~--~--~~~~l~~~~L~~i~~~~~--iPl--V~h-G~-SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 175 GNAHGMY--N--GDPNLRFDRLQEINDVVH--IPL--VLH-GG-SGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred CCCCCCC--C--CCCccCHHHHHHHHHhcC--CCE--EEE-CC-CCCCHHHHHHHHHcCCcEEE
Confidence 5555422 1 223444443333332211 221 111 10 11233444557899999983
No 321
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=86.06 E-value=2.8 Score=37.00 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
.+++++.+... ....++|+-. |.+. ....+.+.++++.+++.|+.+++=. .-+.+.++.-++.|.+
T Consensus 72 ~~emi~ia~~v---kP~~vtLVPEkr~ElTTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFi-DP~~~qi~~A~~~GAd 146 (237)
T TIGR00559 72 TEEMIRIAEEI---KPEQVTLVPEARDEVTTEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFI-DADKDQISAAAEVGAD 146 (237)
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCCccCCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 46777665544 3456666521 1111 2356789999999999898886543 3458899999999999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHH
Q psy8190 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQR 224 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~ 224 (348)
+|.+.-+.-..-+..-......+...++.+.+++.|+.++++ +|=+++.+
T Consensus 147 ~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAG----HgLny~Nv 196 (237)
T TIGR00559 147 RIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNAG----HGLNYHNV 196 (237)
T ss_pred EEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecC----CCCCHHhH
Confidence 998765441111111000123566777778888889888765 55555544
No 322
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.05 E-value=2.5 Score=35.48 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=42.9
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
++++.+.|++.|.+-.. +++.+.++++.++..+ +.+.++ |.++.+.+..+.+.|+|.+++|-
T Consensus 93 ~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~S-GGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 93 AEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEAS-GGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEE-SSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEE-CCCCHHHHHHHHhcCCCEEEcCh
Confidence 34456678888877432 3478888888777643 444444 56899999999999999999864
No 323
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=85.91 E-value=23 Score=30.92 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=58.1
Q ss_pred CcEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeee
Q psy8190 146 GLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIG 216 (348)
Q Consensus 146 ~~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~G 216 (348)
+.++.++.+.-+.+ ..+.++++|++.|.+++.. .....+. .+. ....+...+.++.+++ .++.+.+.+-.|
T Consensus 54 ~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 54 ERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 45555555444443 5667778899999887765 2222221 111 1256666777777766 355555554444
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 217 LSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 217 lget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
.... ++..+.+..+.+.+ ++.+.++..
T Consensus 134 ~~~~-~~~~~~~~~l~~~G--vd~i~v~~~ 160 (231)
T cd02801 134 WDDE-EETLELAKALEDAG--ASALTVHGR 160 (231)
T ss_pred cCCc-hHHHHHHHHHHHhC--CCEEEECCC
Confidence 4222 46777778888887 788776554
No 324
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.91 E-value=5.4 Score=36.33 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCE-EEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHH
Q psy8190 100 IESVITAAQKAKSDGATR-FCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQ 160 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~-i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~ 160 (348)
.+.+...++.+++.|... +.+... ..+..+.+++.++++.+.+.+.. +++ +.|.++++.
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~--~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~ 179 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYT--GSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYA 179 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEec--CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHH
Confidence 344555555555555332 122111 01223455666666665554432 222 355555543
No 325
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=85.90 E-value=22 Score=33.33 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred cEEEEecCCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeeec
Q psy8190 147 LETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIGL 217 (348)
Q Consensus 147 ~~i~~~~g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl 217 (348)
.++.+....-+++ -++.++++|+|.|.+++.. .+.+.+. .+. -...+...+.++.+++ .++++++-+=+|.
T Consensus 65 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~ 144 (333)
T PRK11815 65 HPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI 144 (333)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeee
Confidence 3444554444443 3455667788888888766 3444221 111 1356666777777776 4677766555676
Q ss_pred -C-CCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 218 -S-ESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 218 -g-et~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
+ +|.++..+.+..+.+.+ ++.+.++.
T Consensus 145 ~~~~t~~~~~~~~~~l~~aG--~d~i~vh~ 172 (333)
T PRK11815 145 DDQDSYEFLCDFVDTVAEAG--CDTFIVHA 172 (333)
T ss_pred CCCcCHHHHHHHHHHHHHhC--CCEEEEcC
Confidence 3 45667777778888887 77777663
No 326
>PRK08185 hypothetical protein; Provisional
Probab=85.81 E-value=23 Score=32.45 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=67.0
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHH----HhcCcEEEEecCC-----------------CCHHHHHHHHH
Q psy8190 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV----KKIGLETCLTLGM-----------------LNENQAYRLKK 166 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i----~~~~~~i~~~~g~-----------------l~~e~l~~Lk~ 166 (348)
+.+.+.|++.|.+-+.. .+.+...++.+++ +..++.+....|. -+++..+.+.+
T Consensus 85 ~~ai~~Gf~SVM~D~S~-----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 85 MRAIRCGFTSVMIDGSL-----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred HHHHHcCCCEEEEeCCC-----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHH
Confidence 34456799999887652 2334444444444 4456665543221 14566666666
Q ss_pred h-CCCeeeccCCCCHHHHhccC-CCCCHHHHHHHHHHHHH-cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeee
Q psy8190 167 V-GLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRN-VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 167 a-G~~~i~~g~et~~e~l~~i~-~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
. |+|.+-+++.|.--+|+.-+ +..+ ++.++.+++ .++++. +.|- |-..+++ +.+.+++ +.-|.
T Consensus 160 ~TgvD~LAvaiGt~HG~y~~~~kp~L~----~e~l~~I~~~~~iPLV---lHGgsg~~~e~~----~~ai~~G--I~KiN 226 (283)
T PRK08185 160 RTGVDTLAVAIGTAHGIYPKDKKPELQ----MDLLKEINERVDIPLV---LHGGSANPDAEI----AESVQLG--VGKIN 226 (283)
T ss_pred hhCCCEEEeccCcccCCcCCCCCCCcC----HHHHHHHHHhhCCCEE---EECCCCCCHHHH----HHHHHCC--CeEEE
Confidence 5 99999999988656665433 3334 444444444 356553 3344 4454544 4455676 55555
Q ss_pred cc
Q psy8190 243 IN 244 (348)
Q Consensus 243 ~~ 244 (348)
++
T Consensus 227 i~ 228 (283)
T PRK08185 227 IS 228 (283)
T ss_pred eC
Confidence 43
No 327
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=85.76 E-value=29 Score=31.92 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred HHHHHHHHHH-HHhcCcEEEEecCCCCHH----HHHHHHHhC-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHH
Q psy8190 132 LDNIENMICE-VKKIGLETCLTLGMLNEN----QAYRLKKVG-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN 204 (348)
Q Consensus 132 ~~~~~~l~~~-i~~~~~~i~~~~g~l~~e----~l~~Lk~aG-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~ 204 (348)
.+.+.+.+.. .++.+..+.++.+..+.+ .++.++++| +|.|.+++-. .... ....-.++.+...+.++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~-gg~~~~~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 76 VDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKH-GGMAFGTDPELAYEVVKAVKE 154 (301)
T ss_pred HHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCC-CccccccCHHHHHHHHHHHHH
Confidence 4444444433 333456677776544443 355667788 9999887744 2110 000112466777888888887
Q ss_pred c-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc------CCCC-----CCCC-CCCCHHHHHHHHHH
Q psy8190 205 V-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI------KGTP-----LYGS-SILDPLEFIRTIAV 271 (348)
Q Consensus 205 ~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~------~gT~-----l~~~-~~~~~~~~~~~~a~ 271 (348)
. .+++.+-+ .-+.++..+.++.+.+.+ ++.+.+..-.+- .+.| .... ++......++++..
T Consensus 155 ~~~~pv~vKl----~~~~~~~~~~a~~l~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~ 228 (301)
T PRK07259 155 VVKVPVIVKL----TPNVTDIVEIAKAAEEAG--ADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQ 228 (301)
T ss_pred hcCCCEEEEc----CCCchhHHHHHHHHHHcC--CCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHH
Confidence 5 44443332 224457777788888887 776654321110 1111 1111 11101113344444
Q ss_pred HHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCc
Q psy8190 272 ARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINT 334 (348)
Q Consensus 272 ~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p 334 (348)
.+... +..|-..+|-.+ .+.....+.+||+.++.+--+. . ++.. ++..+++.+.||.=
T Consensus 229 i~~~~-~ipvi~~GGI~~--~~da~~~l~aGAd~V~igr~ll-~-~P~~~~~i~~~l~~~~~~~g~~~ 291 (301)
T PRK07259 229 VYQAV-DIPIIGMGGISS--AEDAIEFIMAGASAVQVGTANF-Y-DPYAFPKIIEGLEAYLDKYGIKS 291 (301)
T ss_pred HHHhC-CCCEEEECCCCC--HHHHHHHHHcCCCceeEcHHHh-c-CcHHHHHHHHHHHHHHHHcCCCC
Confidence 44433 222222232222 3444556789999886654221 2 3331 45677888889863
No 328
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=85.69 E-value=21 Score=32.60 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---------------CCHHHHHH
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---------------LNENQAYR 163 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---------------l~~e~l~~ 163 (348)
+++.+. .+.+.|+++|-|-|+. -|...+.....++++..+..|+.+....|. .+++.++.
T Consensus 81 ~~~~i~----~ai~~GftSVMiD~S~-l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~ 155 (276)
T cd00947 81 SFELIK----RAIRAGFSSVMIDGSH-LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEE 155 (276)
T ss_pred CHHHHH----HHHHhCCCEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHH
Confidence 445554 3456799999887762 333345566667777777777777654332 23566665
Q ss_pred HHH-hCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCe
Q psy8190 164 LKK-VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPES 240 (348)
Q Consensus 164 Lk~-aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~ 240 (348)
+.+ -|+|.+-+++.|.--.|+.-.+..+++. ++.+++ .++++ ++-|- |-..+++.+ +.+.+ +.-
T Consensus 156 Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~----L~~i~~~~~vPL---VlHGgSG~~~e~~~~----ai~~G--i~K 222 (276)
T cd00947 156 FVEETGVDALAVAIGTSHGAYKGGEPKLDFDR----LKEIAERVNVPL---VLHGGSGIPDEQIRK----AIKLG--VCK 222 (276)
T ss_pred HHHHHCCCEEEeccCccccccCCCCCccCHHH----HHHHHHHhCCCE---EEeCCCCCCHHHHHH----HHHcC--CeE
Confidence 554 6999999999886555553223345542 333332 25554 34455 555555443 34565 555
Q ss_pred eecc
Q psy8190 241 VPIN 244 (348)
Q Consensus 241 i~~~ 244 (348)
|.++
T Consensus 223 iNi~ 226 (276)
T cd00947 223 ININ 226 (276)
T ss_pred EEeC
Confidence 5544
No 329
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=85.65 E-value=7.2 Score=34.24 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-c-CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+++++...+..+...|.+-|++-+++. ..+. ++++.+++ . +.++.+-.|..+.|.++.+.++|++++-+|
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe~SG~---~~~~----e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVG 204 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLEYSGA---YGPP----EVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVG 204 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCC---cCCH----HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6899999999988889988888874332 1233 44555554 3 678888889999999999999999999876
No 330
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=85.27 E-value=32 Score=32.10 Aligned_cols=192 Identities=16% Similarity=0.157 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHHh-cCcEEEEecCCCCH----HHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCC-HHHHHHHHHHHH
Q psy8190 131 DLDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRD-YENRLNTLKNVR 203 (348)
Q Consensus 131 ~~~~~~~l~~~i~~-~~~~i~~~~g~l~~----e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~-~~~~~~~i~~~~ 203 (348)
..+.+.+.++..++ .+..+.++....+. +.++.+.++|+|.+.+++-. ..+ ... .+.. .+.+.+.++.++
T Consensus 83 g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~-~g~~~~~~~~eiv~~v~ 159 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDI-SGAEVEQRYLDILRAVK 159 (325)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCc-ccchHHHHHHHHHHHHH
Confidence 45666666666554 35666666533333 34566677789988887754 111 011 1222 244556677776
Q ss_pred Hc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC------CCCC--C-CCCCHHHHHHHHHHHH
Q psy8190 204 NV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT------PLYG--S-SILDPLEFIRTIAVAR 273 (348)
Q Consensus 204 ~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT------~l~~--~-~~~~~~~~~~~~a~~R 273 (348)
+. .+++.+-+- . ...++.+..+.+.+.+ .+.+.+..-.+.+.- +... . .++.....++++...+
T Consensus 160 ~~~~iPv~vKl~--p--~~~~~~~~a~~l~~~G--adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~ 233 (325)
T cd04739 160 SAVTIPVAVKLS--P--FFSALAHMAKQLDAAG--ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS 233 (325)
T ss_pred hccCCCEEEEcC--C--CccCHHHHHHHHHHcC--CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH
Confidence 63 444433321 1 1235666777777777 777766443322111 0000 0 1111122344444444
Q ss_pred HHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCch
Q psy8190 274 ITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINTR 335 (348)
Q Consensus 274 ~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p~ 335 (348)
... +..|-..+|-.+ .+.....+.+||+.+..+.-+ -..|+.. +++.+++.+.||.=+
T Consensus 234 ~~~-~ipIig~GGI~s--~~Da~e~l~aGA~~Vqv~ta~-~~~gp~~~~~i~~~L~~~l~~~g~~~i 296 (325)
T cd04739 234 GRV-KASLAASGGVHD--AEDVVKYLLAGADVVMTTSAL-LRHGPDYIGTLLAGLEAWMEEHGYESV 296 (325)
T ss_pred ccc-CCCEEEECCCCC--HHHHHHHHHcCCCeeEEehhh-hhcCchHHHHHHHHHHHHHHHcCCCCH
Confidence 322 222333344322 333455677999999765322 2334442 577888999999643
No 331
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=85.18 E-value=37 Score=32.61 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHh-c-CcEEEEec-CCCCHH----HHHHHHHhCCCeeeccCCC-CHHHHhccC--CCCCHHHHHHHHH
Q psy8190 131 DLDNIENMICEVKK-I-GLETCLTL-GMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDII--STRDYENRLNTLK 200 (348)
Q Consensus 131 ~~~~~~~l~~~i~~-~-~~~i~~~~-g~l~~e----~l~~Lk~aG~~~i~~g~et-~~e~l~~i~--~~~~~~~~~~~i~ 200 (348)
.++.+++.++.+++ . +..+.+|. +..+.+ .++.+.++|+|.+.+++-. .-...+..+ -.++++...+.++
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 46677776777764 3 46777777 434543 4556667899999988855 321112221 1356666666677
Q ss_pred HHHHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec-ccccccC------CCCC------CCCCCCC-----
Q psy8190 201 NVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI-NNLVQIK------GTPL------YGSSILD----- 261 (348)
Q Consensus 201 ~~~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~-~~l~P~~------gT~l------~~~~~~~----- 261 (348)
++++. .+++ ++=+.-+..++.+..+.+.+.+ .+.+.+ +.+.+.. .+|. ......+
T Consensus 176 ~Vk~~~~iPv----~vKLsPn~t~i~~ia~aa~~~G--adgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alk 249 (385)
T PLN02495 176 WINAKATVPV----WAKMTPNITDITQPARVALKSG--CEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVR 249 (385)
T ss_pred HHHHhhcCce----EEEeCCChhhHHHHHHHHHHhC--CCEEEEecccCcccccccccCccccccCCCCCCCCccchhhh
Confidence 77664 2332 2223334455777777777776 666554 3232111 1111 0111112
Q ss_pred HHHHHHHHHHHHHH---CC-CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCC
Q psy8190 262 PLEFIRTIAVARIT---MP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGI 332 (348)
Q Consensus 262 ~~~~~~~~a~~R~~---lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~ 332 (348)
+.-...+..+++.+ ++ +..|-..+|-++ .+-....+.+||+.+-.+.-+ -..|+.. +++.+++.+.||
T Consensus 250 piAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s--~~Da~e~i~aGAs~VQv~Ta~-~~~Gp~vi~~i~~~L~~~m~~~G~ 326 (385)
T PLN02495 250 PIALAKVMAIAKMMKSEFPEDRSLSGIGGVET--GGDAAEFILLGADTVQVCTGV-MMHGYPLVKNLCAELQDFMKKHNF 326 (385)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcEEEECCCCC--HHHHHHHHHhCCCceeEeeee-eecCcHHHHHHHHHHHHHHHHcCC
Confidence 22122222233322 11 223333344333 233455788999998443211 1244442 467888899999
Q ss_pred Cch
Q psy8190 333 NTR 335 (348)
Q Consensus 333 ~p~ 335 (348)
.-.
T Consensus 327 ~si 329 (385)
T PLN02495 327 SSI 329 (385)
T ss_pred CCH
Confidence 743
No 332
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.80 E-value=4.8 Score=35.58 Aligned_cols=80 Identities=5% Similarity=0.034 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+|.++.+. +.+. ++++++.+-+...... ..-.++++.+.+ .++++.+..|..+.+.++.|.++|++++.+|-.
T Consensus 31 dp~~~a~~---~~~~-~~~l~ivDldga~~g~--~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta 104 (228)
T PRK04128 31 DPVEIALR---FSEY-VDKIHVVDLDGAFEGK--PKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHH---HHHh-CCEEEEEECcchhcCC--cchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence 56555544 4445 7888776532111111 112345555544 478899999999999999999999999988755
Q ss_pred C-CHHHHh
Q psy8190 178 T-SPKLYG 184 (348)
Q Consensus 178 t-~~e~l~ 184 (348)
+ ++++++
T Consensus 105 a~~~~~l~ 112 (228)
T PRK04128 105 AFDLEFLE 112 (228)
T ss_pred hcCHHHHH
Confidence 5 444444
No 333
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=84.78 E-value=20 Score=31.59 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHH----HhcCcEEEEecCC--------CCHHHHHH---
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV----KKIGLETCLTLGM--------LNENQAYR--- 163 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i----~~~~~~i~~~~g~--------l~~e~l~~--- 163 (348)
+.+....+++++.+.|+..+.++--.... +.+.+.+.+..+ ++.++.+.++.-. ++.+.+..
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE---EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc---hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHH
Confidence 44555666777888899887554321111 223334444433 3456666554322 44555554
Q ss_pred -HHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeee-c-CCCHHHHHHHHHHHHhcCCCCC
Q psy8190 164 -LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIG-L-SESRDQRAELIFQLANLNPYPE 239 (348)
Q Consensus 164 -Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~G-l-get~e~~~~~l~~l~~l~~~~~ 239 (348)
..++|.|.|.++..+ + ++.++.+.+ .++++ ++.| . ..|.++..+.+..+.+.+ .+
T Consensus 151 ~a~~~GaD~Ik~~~~~------------~----~~~~~~i~~~~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~G--a~ 209 (235)
T cd00958 151 IGAELGADIVKTKYTG------------D----AESFKEVVEGCPVPV---VIAGGPKKDSEEEFLKMVYDAMEAG--AA 209 (235)
T ss_pred HHHHHCCCEEEecCCC------------C----HHHHHHHHhcCCCCE---EEeCCCCCCCHHHHHHHHHHHHHcC--Cc
Confidence 667799988764321 1 233444443 23443 3334 3 368888899999999998 77
Q ss_pred eeeccccc
Q psy8190 240 SVPINNLV 247 (348)
Q Consensus 240 ~i~~~~l~ 247 (348)
.+.+.+-+
T Consensus 210 gv~vg~~i 217 (235)
T cd00958 210 GVAVGRNI 217 (235)
T ss_pred EEEechhh
Confidence 76655543
No 334
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=84.75 E-value=6.8 Score=34.75 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=65.0
Q ss_pred ccccCHHHHHHHHHHHHhCCCCEEEEeccC--CCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHh-CCCe
Q psy8190 95 TKILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV-GLDY 171 (348)
Q Consensus 95 ~~~~~~eei~~~~~~~~~~G~~~i~l~gg~--~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~a-G~~~ 171 (348)
|...+.-++.+.++.+.+.|+..|.++.-. .+....+.+-+.++.+.. .+++..+.|..+-+.++.|++. |+..
T Consensus 141 W~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~G 217 (241)
T COG0106 141 WQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEG 217 (241)
T ss_pred ccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcE
Confidence 333344445555667778899998877531 134456677777777776 6888899999999999999999 8888
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHH
Q psy8190 172 YNHNLDTSPKLYGDIISTRDYENRLNTLK 200 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~ 200 (348)
+-+|= .+|.. ..+.++.+++.+
T Consensus 218 vIvG~----ALy~g---~~~l~ea~~~~~ 239 (241)
T COG0106 218 VIVGR----ALYEG---KFTLEEALACVR 239 (241)
T ss_pred EEEeh----HHhcC---CCCHHHHHHHHh
Confidence 77653 34432 235555555543
No 335
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=84.59 E-value=3.9 Score=36.06 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHH-HHHhCCCeeecc
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYR-LKKVGLDYYNHN 175 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~-Lk~aG~~~i~~g 175 (348)
+..+.++.+.+.|+..+.+.+-....... ..-.++++.+++ .++++.++.|..+.+.++. +++.|++.+.++
T Consensus 154 ~~~~~~~~~~~~G~d~i~i~~i~~~g~~~--g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 154 DPVEWAREAEQLGAGEILLNSIDRDGTMK--GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCccCCcC--CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 34556667778899999887631111111 112455666655 4788888999999999888 999999998865
No 336
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=84.43 E-value=28 Score=30.63 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=103.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe----cCC-CCH---HHHHHHHHhCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT----LGM-LNE---NQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~----~g~-l~~---e~l~~Lk~aG~ 169 (348)
.+.++|.+.++++.+.|+..|++. | .++...-+.++..++.+++- .|. .+. ...+...+.|.
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~-----p-----~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVN-----P-----SYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC-----H-----HHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 688999999999999999999872 2 22222333444445665543 232 222 34455556788
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccc
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQ 248 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P 248 (348)
+-+.+-+.- ..+. ...++...+-++.+++.--....-+|+-. .-+.+++.+..+.+.+.+ .+.|..+.
T Consensus 89 ~EiD~Vin~-----~~~~-~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag--adfIKTsT--- 157 (221)
T PRK00507 89 DEIDMVINI-----GALK-SGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAG--ADFVKTST--- 157 (221)
T ss_pred ceEeeeccH-----HHhc-CCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhC--CCEEEcCC---
Confidence 877653321 1111 23577888888877774212344556655 457788888888888887 77554332
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCccee
Q psy8190 249 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 249 ~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
-+. ....+++....|. ...+ +..|..++|-.+. +.....+.+||+.+
T Consensus 158 ----G~~-~~gat~~~v~~m~----~~~~~~~~IKasGGIrt~--~~a~~~i~aGA~ri 205 (221)
T PRK00507 158 ----GFS-TGGATVEDVKLMR----ETVGPRVGVKASGGIRTL--EDALAMIEAGATRL 205 (221)
T ss_pred ----CCC-CCCCCHHHHHHHH----HHhCCCceEEeeCCcCCH--HHHHHHHHcCcceE
Confidence 221 1224444333333 3333 3567778765443 34555688999998
No 337
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=84.38 E-value=7.9 Score=35.94 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=53.5
Q ss_pred HHHhCCCeeeccCCC-CHHHHhccCC---CCCHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCC
Q psy8190 164 LKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYP 238 (348)
Q Consensus 164 Lk~aG~~~i~~g~et-~~e~l~~i~~---~~~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~ 238 (348)
+.+.|++.|.+++.- .+.+.+.-.. -.+++...+.++.+++ .++++++-+=+|..++.++..+.+..+.+.+ +
T Consensus 75 ~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G--~ 152 (309)
T PF01207_consen 75 VAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAG--V 152 (309)
T ss_dssp HCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT---
T ss_pred hhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcc--c
Confidence 333466777776666 4555543211 1477888888888886 5789999999999877888899999999998 8
Q ss_pred Ceeecccccc
Q psy8190 239 ESVPINNLVQ 248 (348)
Q Consensus 239 ~~i~~~~l~P 248 (348)
+.+.++.-.+
T Consensus 153 ~~i~vH~Rt~ 162 (309)
T PF01207_consen 153 SAITVHGRTR 162 (309)
T ss_dssp -EEEEECS-T
T ss_pred ceEEEecCch
Confidence 8888777643
No 338
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=84.38 E-value=33 Score=31.44 Aligned_cols=201 Identities=11% Similarity=0.052 Sum_probs=109.7
Q ss_pred CCCEEEEeccC-------CCCCcccHHHHHHHHHHHHh-cCcEEEE--ecCCCCH----HHHHHHHHhCCCeeeccCCCC
Q psy8190 114 GATRFCMGAAW-------RELKDRDLDNIENMICEVKK-IGLETCL--TLGMLNE----NQAYRLKKVGLDYYNHNLDTS 179 (348)
Q Consensus 114 G~~~i~l~gg~-------~~~~~~~~~~~~~l~~~i~~-~~~~i~~--~~g~l~~----e~l~~Lk~aG~~~i~~g~et~ 179 (348)
|++-++++|.+ .+....+++.+.+.++.|.. ..+++.+ ..| .+. ..++.+.++|+..+++-=|+.
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~ 116 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLG 116 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCC
Confidence 88888887632 11112456777777777765 3566544 455 454 347888899999888732222
Q ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCCeeeEeEeee----c-CCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 180 PKLYGDII-----STRDYENRLNTLKNVRNVGINICCGGIIG----L-SESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 180 ~e~l~~i~-----~~~~~~~~~~~i~~~~~~G~~i~~~~i~G----l-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
+..-.... .-.+.++..+.++.++++.-....-++.+ + ++..++.++-.+...+.+ .|.+-+.
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG--AD~ifv~----- 189 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAG--ADGIMIH----- 189 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcC--CCEEEec-----
Confidence 22111111 11377888888888887621111222222 2 344666677777777777 7776432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc-ccccchhhHHHHHHhCcceeeeCCeeccCCCCCchHHHHHHH
Q psy8190 250 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG-RKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328 (348)
Q Consensus 250 ~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g-~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~~~~~i~ 328 (348)
....+.++..++....+..+|+..+-+.++ .... . ....-..|++.+.++......+-....+..+-+.
T Consensus 190 -------~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~--~-~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 190 -------SRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTT--P-TDEFRDAGISVVIYANHLLRAAYAAMQQVAERIL 259 (285)
T ss_pred -------CCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCC--C-HHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 112467788888887776666643322111 1111 1 2234567899987765432222222234444445
Q ss_pred HcCC
Q psy8190 329 KLGI 332 (348)
Q Consensus 329 ~~G~ 332 (348)
+.|-
T Consensus 260 ~~g~ 263 (285)
T TIGR02320 260 EHGR 263 (285)
T ss_pred HcCC
Confidence 5454
No 339
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.35 E-value=7.3 Score=35.47 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.++.+.|++.|.+. + .+++.+.++++.++.. .+.+.++.| ++++.++.+.+.|+|.+++|-=
T Consensus 194 ea~~A~~~GaDiI~LD----n---~~~e~l~~~v~~~~~~~~~~~ieAsGg-It~~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 194 EAKNAMNAGADIVMCD----N---MSVEEIKEVVAYRNANYPHVLLEASGN-ITLENINAYAKSGVDAISSGSL 259 (273)
T ss_pred HHHHHHHcCCCEEEEC----C---CCHHHHHHHHHHhhccCCCeEEEEECC-CCHHHHHHHHHcCCCEEEeChh
Confidence 3444556777766542 2 2557888888766542 344555555 4999999999999999998753
No 340
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=84.24 E-value=27 Score=30.26 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=93.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcE--EEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLE--TCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~--i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++-...+.++.+.+.|++.|.+.-.+. +.........+.++.+++. ... +++-... ..+.++.+.++|++.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d-~~~~i~~~~~~g~d~v~v 90 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDG-HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN-PDRYVPDFAKAGADIITF 90 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccC-CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCC-HHHHHHHHHHcCCCEEEE
Confidence 3456677788888899999998843211 1101111234566666642 212 2222211 234678888999999765
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
-.+. .+...+.++.+++.|+.+... ++. .|..+..+.+ ... ++.+.+.+..| |+--
T Consensus 91 h~~~-------------~~~~~~~~~~~~~~~~~~g~~--~~~-~t~~e~~~~~---~~~---~d~i~~~~~~~--g~tg 146 (220)
T PRK05581 91 HVEA-------------SEHIHRLLQLIKSAGIKAGLV--LNP-ATPLEPLEDV---LDL---LDLVLLMSVNP--GFGG 146 (220)
T ss_pred eecc-------------chhHHHHHHHHHHcCCEEEEE--ECC-CCCHHHHHHH---Hhh---CCEEEEEEECC--CCCc
Confidence 3322 123345588888888765442 232 2334433332 222 45555555433 3322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----CceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPT----SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~----~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. ......+..+...+-+.+. ..+.+.+| +..+.-.....+||+.++.|..+.
T Consensus 147 ~----~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG---I~~~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 147 Q----KFIPEVLEKIRELRKLIDERGLDILIEVDGG---INADNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred c----cccHHHHHHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHcCCCEEEEChhhh
Confidence 1 1222334444444444432 22334343 223333345569999998887654
No 341
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.14 E-value=38 Score=32.00 Aligned_cols=186 Identities=15% Similarity=0.175 Sum_probs=103.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCc---ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWR---ELKD---RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~---~~~~---~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~ 170 (348)
-+.+++++.++.+++.|++-+. .|.+. +|+. .. +.=+++++++++ .|+.+... ..+.+.++.+.+. +|
T Consensus 112 Es~eq~l~~A~~lk~~g~~~~r-~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~te--v~d~~~v~~~~~~-~d 186 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFLR-GGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITE--VMDAADLEKIAEV-AD 186 (352)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-eeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEe--eCCHHHHHHHHhh-CC
Confidence 3578899999999888876543 33321 1111 12 344455555554 68887543 4778888888888 78
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
.+.++--.. .+ ...++.+.+.|.+|. +=-|+.-|.+++...++++.+-+ ...+.+ -+.
T Consensus 187 ~lqIga~~~----------~n----~~LL~~va~t~kPVl--lk~G~~~t~ee~~~A~e~i~~~G--n~~viL----~er 244 (352)
T PRK13396 187 VIQVGARNM----------QN----FSLLKKVGAQDKPVL--LKRGMAATIDEWLMAAEYILAAG--NPNVIL----CER 244 (352)
T ss_pred eEEECcccc----------cC----HHHHHHHHccCCeEE--EeCCCCCCHHHHHHHHHHHHHcC--CCeEEE----Eec
Confidence 887754220 01 222555555566542 22355568899999999998776 333322 223
Q ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHHCCCCce-ecc--ccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 251 GTPLYG--SSILDPLEFIRTIAVARITMPTSRI-RMS--AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 251 gT~l~~--~~~~~~~~~~~~~a~~R~~lp~~~i-~~s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|+.-+. ++ ...-.++.+...|....-..| ..| .|+..+.......++.+||++++.+...
T Consensus 245 G~rtf~s~y~--~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 245 GIRTFDRQYT--RNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred CCccCcCCCC--CCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 442221 12 112234455555554321111 122 2432233567788999999999876544
No 342
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=83.97 E-value=4.4 Score=38.10 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCEE-EEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHH
Q psy8190 102 SVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAY 162 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i-~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~ 162 (348)
.+.+.++.+++.|...+ .+... ...+.+++.++++.+.+.+.. +++ +.|.++++.+.
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a----~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~ 176 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMS----HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVR 176 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEec----cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHH
Confidence 34444555555665432 22211 123456666666666655432 222 45555554433
No 343
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=83.74 E-value=27 Score=32.11 Aligned_cols=124 Identities=16% Similarity=0.270 Sum_probs=70.0
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-----------------CCHHHHHHHHH-hC
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----------------LNENQAYRLKK-VG 168 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-----------------l~~e~l~~Lk~-aG 168 (348)
+..+.+.|+++|-+-|+ .-|...+.+...++++..+..++.+....|. .+++.++.+-+ -|
T Consensus 93 i~~ai~~GftSVMiDgS-~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg 171 (288)
T TIGR00167 93 CAQAVKAGFSSVMIDGS-HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTG 171 (288)
T ss_pred HHHHHHcCCCEEEecCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccC
Confidence 33455679999988776 2233345555666666666667777654332 23466666654 69
Q ss_pred CCeeeccCCCCHHHHhccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 169 LDYYNHNLDTSPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+|.+-+++.|.--.|+. .+. .+++. ++.|+.. .++++..+ |- |-..+++ +.+.+.+ +.-|.+.
T Consensus 172 vD~LAvaiGt~HG~y~~-~p~~Ld~~~-L~~I~~~--v~vPLVlH---GgSG~~~e~~----~~ai~~G--i~KiNi~ 236 (288)
T TIGR00167 172 VDSLAAAIGNVHGVYKG-EPKGLDFER-LEEIQKY--VNLPLVLH---GGSGIPDEEI----KKAISLG--VVKVNID 236 (288)
T ss_pred CcEEeeccCccccccCC-CCCccCHHH-HHHHHHH--hCCCEEEe---CCCCCCHHHH----HHHHHcC--CeEEEcC
Confidence 99999999886566653 233 34442 3333222 25554433 44 4455554 3444565 5555443
No 344
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=83.51 E-value=5.4 Score=35.99 Aligned_cols=68 Identities=13% Similarity=-0.072 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.-++.++...+.|++.++++.-+. ....+ .++++.|.+.++++.+-.|..+ |.++.+.++|+++|.+|
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdg-g~~~n----~~~i~~i~~~~~~vqvGGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGA-DDASL----AAALEALRAYPGGLQVGGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC-CCccc----HHHHHHHHhCCCCEEEeCCccH-HHHHHHHHcCCCEEEEc
Confidence 335555677788999988876421 11222 4555555555567777777765 99999999999999985
No 345
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=83.29 E-value=34 Score=31.40 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C-c--EEEEe--cCCCCHHHHHHHHHhCCCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G-L--ETCLT--LGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~-~--~i~~~--~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+++.+.+.++.+.+.|++.|+|.+... ...+..+.++++.+++. + + .++++ .|.-....+.. .++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA-~~aG~~~ 227 (287)
T PRK05692 152 VPPEAVADVAERLFALGCYEISLGDTIG---VGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYAS-LEEGITV 227 (287)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeccccC---ccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHH-HHhCCCE
Confidence 4688999999999999999999976421 23567888888888863 2 3 34443 34333344444 4789999
Q ss_pred eeccCCC-CHHHHhccCCC-CCHHHHHHHHHHHHHcCCee
Q psy8190 172 YNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 172 i~~g~et-~~e~l~~i~~~-~~~~~~~~~i~~~~~~G~~i 209 (348)
+...+.. ..--|..=+.+ -..++.+-.++ ..|+.+
T Consensus 228 id~s~~GlGecpfa~g~aGN~~~E~lv~~L~---~~g~~t 264 (287)
T PRK05692 228 FDASVGGLGGCPYAPGASGNVATEDVLYMLH---GLGIET 264 (287)
T ss_pred EEEEccccCCCCCCCCccccccHHHHHHHHH---hcCCCC
Confidence 9876644 22111110012 25566655554 346553
No 346
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=83.11 E-value=29 Score=31.90 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=66.3
Q ss_pred HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC------------------CCHHHHH-HHHHhCC
Q psy8190 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM------------------LNENQAY-RLKKVGL 169 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~------------------l~~e~l~-~Lk~aG~ 169 (348)
.+.+.|+++|-|-|+. -|...+.....++++..+..++.+....|. .+++.+. ..++-|+
T Consensus 91 ~ai~~GftSVM~DgS~-l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tgv 169 (287)
T PF01116_consen 91 RAIDAGFTSVMIDGSA-LPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGV 169 (287)
T ss_dssp HHHHHTSSEEEEE-TT-S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTT
T ss_pred HHHHhCcccccccCCc-CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCC
Confidence 3445599999887762 233345566677777777778777653221 1345544 5578899
Q ss_pred CeeeccCCCCHHHHhcc-CCCCCHHHHHHHHHHHHH-c-CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 170 DYYNHNLDTSPKLYGDI-ISTRDYENRLNTLKNVRN-V-GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i-~~~~~~~~~~~~i~~~~~-~-G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
|.+-+++.|.--.|+.. .|.-+++ .++.+++ . ++++..+ |- |-..|++. .+.+.+ +.-|.+.
T Consensus 170 D~LAvaiGt~HG~y~~~~~p~Ld~~----~L~~I~~~~~~iPLVlH---GgSG~~~e~~~----~ai~~G--i~KiNi~ 235 (287)
T PF01116_consen 170 DALAVAIGTAHGMYKGGKKPKLDFD----RLKEIREAVPDIPLVLH---GGSGLPDEQIR----KAIKNG--ISKINIG 235 (287)
T ss_dssp SEEEE-SSSBSSSBSSSSSTC--HH----HHHHHHHHHHTSEEEES---SCTTS-HHHHH----HHHHTT--EEEEEES
T ss_pred CEEEEecCccccccCCCCCcccCHH----HHHHHHHhcCCCCEEEE---CCCCCCHHHHH----HHHHcC--ceEEEEe
Confidence 99999998854455542 2222443 3333333 2 5665443 44 55555544 344566 5555543
No 347
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=83.07 E-value=30 Score=33.90 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE--e--cCC-CC----HHHHHHHHHhCCCeeec
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL--T--LGM-LN----ENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~--~--~g~-l~----~e~l~~Lk~aG~~~i~~ 174 (348)
...++.+.+.|++.|.+.... + +...+.+.++..++.|..+.+ + .+. .+ .+.++.+.++|+++|.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~l---n--d~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i 173 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDAL---N--DVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICI 173 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEec---C--cHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344566677788888765541 1 234677788888877755432 2 221 12 25677788889998887
Q ss_pred c
Q psy8190 175 N 175 (348)
Q Consensus 175 g 175 (348)
.
T Consensus 174 ~ 174 (448)
T PRK12331 174 K 174 (448)
T ss_pred c
Confidence 3
No 348
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=82.93 E-value=7.7 Score=34.08 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 105 TAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+.++.+.+.|+..+.+.+-.. .....+. ++++.+.+ .++++.++.|..+.+.++.+++.|++.+.+|
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~----~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPNF----ELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCCH----HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 344556678999887653211 1112233 44444443 4688889999999999999999999998875
No 349
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=82.83 E-value=5.7 Score=35.20 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
+.++.++.+.+.|++++++.+-.. .. ..+.-.++++.+.+ .++++.+-.|.-+.|.++.+.++|++++.+|-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~--~~-~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDA--IM-GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcc--cc-CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 345556667778999999876421 11 22333556666654 4678888899999999999999999999988766
No 350
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=82.81 E-value=44 Score=31.74 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCC---CC---CcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWR---EL---KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~---~~---~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+.+.+.++.+++.|++.+. .|.+. +| .....+.+..+.+..++.|+.+.++ ..+.+.++.+.+. ++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r-~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~--v~d~~~~~~l~~~-vd~l 205 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLR-GGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISE--IVNPADVEVALDY-VDVI 205 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEE-ccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHHh-CCeE
Confidence 568888888888888876543 33221 11 0124566666666666678888654 4777889999998 8888
Q ss_pred eccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCC
Q psy8190 173 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 252 (348)
Q Consensus 173 ~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT 252 (348)
.++--.. .+ ...++.+.+.|.+|.. =-|+.-|.+++...++.+.+-+ ...+.+. ..|+
T Consensus 206 kI~s~~~----------~n----~~LL~~~a~~gkPVil--k~G~~~t~~e~~~Ave~i~~~G--n~~i~L~----erg~ 263 (360)
T PRK12595 206 QIGARNM----------QN----FELLKAAGRVNKPVLL--KRGLSATIEEFIYAAEYIMSQG--NGQIILC----ERGI 263 (360)
T ss_pred EECcccc----------cC----HHHHHHHHccCCcEEE--eCCCCCCHHHHHHHHHHHHHCC--CCCEEEE----CCcc
Confidence 7754220 01 1345555556665421 1234458999999999998876 3333221 1244
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cccccccc-----hhhHHHHHHhCcceeeeCCee
Q psy8190 253 PLYGSSILDPLEFIRTIAVARITMPTSRIRM-SAGRKEMG-----ETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 253 ~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s~g~~~l~-----~~~~~~~l~~GAn~~~~~~~~ 312 (348)
..|..+... .-.++.+...|..+.-. |-+ + .|..+ ......|+.+||++++.+..+
T Consensus 264 s~yp~~~~~-~ldl~~i~~lk~~~~~P-V~~d~--~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 264 RTYEKATRN-TLDISAVPILKQETHLP-VMVDV--THSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCCCCCCC-CcCHHHHHHHHHHhCCC-EEEeC--CCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 333211001 01345555555433211 222 2 13333 345666899999998876544
No 351
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=82.75 E-value=14 Score=34.36 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=70.0
Q ss_pred ccCHHHHHHHHHHHHhCCCC-------EEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHH
Q psy8190 97 ILSIESVITAAQKAKSDGAT-------RFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---LNENQAYRLKK 166 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~-------~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---l~~e~l~~Lk~ 166 (348)
..+.+++.+....-...|+. -|-..++....+.....-+....+.-++.|++++++++. ...+.++.|++
T Consensus 99 ~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e 178 (308)
T PF02126_consen 99 EASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEE 178 (308)
T ss_dssp TSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHH
Confidence 46778877765433344443 233333321222222222333334444579988887654 44799999999
Q ss_pred hCCC--eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe----eec-------CCCHHHHHHHHHHHHh
Q psy8190 167 VGLD--YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI----IGL-------SESRDQRAELIFQLAN 233 (348)
Q Consensus 167 aG~~--~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i----~Gl-------get~e~~~~~l~~l~~ 233 (348)
+|++ ++.++- +....+. +.++.+-+.|..++.+.+ +|. ..+++++++.+..|.+
T Consensus 179 ~Gv~~~rvvigH---------~D~~~D~----~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~ 245 (308)
T PF02126_consen 179 EGVDPSRVVIGH---------MDRNPDL----DYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIE 245 (308)
T ss_dssp TT--GGGEEETS---------GGGST-H----HHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHH
T ss_pred cCCChhHeEEeC---------CCCCCCH----HHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHH
Confidence 9985 333321 1112232 234555567988888755 244 2567889999999888
Q ss_pred cCCCCCeee
Q psy8190 234 LNPYPESVP 242 (348)
Q Consensus 234 l~~~~~~i~ 242 (348)
-+ ..+.|-
T Consensus 246 ~G-y~~qIl 253 (308)
T PF02126_consen 246 EG-YADQIL 253 (308)
T ss_dssp TT-TGGGEE
T ss_pred cC-CcCcEE
Confidence 77 244443
No 352
>PRK02227 hypothetical protein; Provisional
Probab=82.74 E-value=30 Score=30.70 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-------ecCCCC-HHHHHHHHHhCC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-------TLGMLN-ENQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-------~~g~l~-~e~l~~Lk~aG~ 169 (348)
+..+...+......|+..|-++=.+........+.+..+++.++.. +..+-. ..|.++ .+.....+++|+
T Consensus 66 p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf 145 (238)
T PRK02227 66 PGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGF 145 (238)
T ss_pred chHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCC
Confidence 4777777777777899987664221111122234444455556653 222221 233434 467788899999
Q ss_pred CeeeccCCC-C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 170 DYYNHNLDT-S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 170 ~~i~~g~et-~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+.+-+ +| . ..+|+.+ +.++.-+.++.+|++|+.+ |+ |.= ..+++..|+.++ |+.++|-
T Consensus 146 ~g~Ml--DTa~Kdg~~Lfd~l----~~~~L~~Fv~~ar~~Gl~~------gLAGSL---~~~dip~L~~l~--pD~lGfR 208 (238)
T PRK02227 146 DGAML--DTAIKDGKSLFDHM----DEEELAEFVAEARSHGLMS------ALAGSL---KFEDIPALKRLG--PDILGVR 208 (238)
T ss_pred CEEEE--ecccCCCcchHhhC----CHHHHHHHHHHHHHcccHh------HhcccC---chhhHHHHHhcC--CCEEEec
Confidence 98875 55 2 3444433 7888899999999998754 33 321 245677889998 9999987
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHH
Q psy8190 245 NLVQIKGTPLYGSSILDPLEFIRTIAV 271 (348)
Q Consensus 245 ~l~P~~gT~l~~~~~~~~~~~~~~~a~ 271 (348)
.-.=..|- +...++++...++.+.
T Consensus 209 gavC~g~d---R~~~id~~~V~~~~~~ 232 (238)
T PRK02227 209 GAVCGGGD---RTGRIDPELVAELREA 232 (238)
T ss_pred hhccCCCC---cccccCHHHHHHHHHH
Confidence 65533321 2344566555554443
No 353
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.58 E-value=24 Score=31.51 Aligned_cols=92 Identities=23% Similarity=0.227 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCEEEEeccCCC--------C-CcccHHHHHHHHHHHHhcCcEEEEecC-C----CC----HHHHHHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRE--------L-KDRDLDNIENMICEVKKIGLETCLTLG-M----LN----ENQAYRLK 165 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~--------~-~~~~~~~~~~l~~~i~~~~~~i~~~~g-~----l~----~e~l~~Lk 165 (348)
.+.++.+.+.|+..|.+.....+ - .....+.+.+.++.+++.++++.++.. . .+ .+.++.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE 156 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 33445566678888766544110 0 001345666666777777777766542 2 22 35667777
Q ss_pred HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH
Q psy8190 166 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN 204 (348)
Q Consensus 166 ~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~ 204 (348)
++|++.+.+.- | . ...+++++.+.++.+++
T Consensus 157 ~~g~~~i~l~D-t-------~-G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 157 EAGADEISLKD-T-------V-GLATPEEVAELVKALRE 186 (265)
T ss_pred HcCCCEEEech-h-------c-CCcCHHHHHHHHHHHHH
Confidence 78888877521 1 0 11345555555655555
No 354
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=82.55 E-value=23 Score=35.26 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHhCCCeeeccCCC-C
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL-GMLNENQAYRLKKVGLDYYNHNLDT-S 179 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~-g~l~~e~l~~Lk~aG~~~i~~g~et-~ 179 (348)
+..+.++.+.+.|+.-|.+... ...+ .+..+.++.+++....+.+-. +..+.+..+.+.++|+|.+.+|+.. +
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a-~G~s----~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS-QGNS----IYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC-CCCc----hHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 3377788889999999988654 1111 234678888887522233333 4678999999999999999876643 2
Q ss_pred H---HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHH
Q psy8190 180 P---KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 229 (348)
Q Consensus 180 ~---e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~ 229 (348)
- .....++.+ ....+.++.+.+++.|+++.++ |=-.|..|+.+.+.
T Consensus 316 ~~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vIad---GGi~~~~di~kAla 364 (495)
T PTZ00314 316 ICITQEVCAVGRP-QASAVYHVARYARERGVPCIAD---GGIKNSGDICKALA 364 (495)
T ss_pred ccccchhccCCCC-hHHHHHHHHHHHhhcCCeEEec---CCCCCHHHHHHHHH
Confidence 1 111111111 3456667777888888765431 11246677666653
No 355
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=82.32 E-value=11 Score=34.01 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCeeeccCCCCHHH----------HhccCCCCCHHHHHHHHHHHHHcCCe
Q psy8190 159 NQAYRLKKVGLDYYNHNLDTSPKL----------YGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et~~e~----------l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
+.++.|-++|+|-+.+|+-.++-+ .+.+..+.+.++.++.++.+++.+..
T Consensus 35 e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 35 EIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 445556667777777776543222 22444566777777777777766544
No 356
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.24 E-value=10 Score=35.34 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc-------cHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHh-CC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDR-------DLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV-GL 169 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~-------~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~a-G~ 169 (348)
+.++.++.++.+.+.|+..|.++++....... ......+.++.+++ .++++.++.+..+.+.++.+.+. |+
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~a 305 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKA 305 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 46777777777888888888777663211110 11344566666665 36777777777778888877777 68
Q ss_pred Ceeecc
Q psy8190 170 DYYNHN 175 (348)
Q Consensus 170 ~~i~~g 175 (348)
|.|.++
T Consensus 306 D~V~ig 311 (327)
T cd02803 306 DLVALG 311 (327)
T ss_pred Ceeeec
Confidence 888775
No 357
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=82.24 E-value=10 Score=33.41 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
.++.++.+ .+.+.|+.+|.+.+-.. +....+. ++++.+.+ .+.++.++.|.-+.+.++.|++.|++.+-+
T Consensus 147 ~~~~~~~~---~~~~~g~~~ii~tdi~~dGt~~G~d~----~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAK---RLEELGAGEIILTDIDRDGTMQGPDL----ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHH---HHHHTT-SEEEEEETTTTTTSSS--H----HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHH---HHHhcCCcEEEEeeccccCCcCCCCH----HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45655554 56678999998775321 1222333 44555543 378999999999999999999999988876
Q ss_pred c
Q psy8190 175 N 175 (348)
Q Consensus 175 g 175 (348)
|
T Consensus 220 g 220 (229)
T PF00977_consen 220 G 220 (229)
T ss_dssp S
T ss_pred e
Confidence 4
No 358
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=82.18 E-value=38 Score=30.55 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC---CCC---CcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAW---REL---KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~---~~~---~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+++++.++.+.+.+.+ +...+-. ++| .....+.+..+.+..++.|+.+.++ ..+.+.++.+.+. ++.+
T Consensus 37 ~~~~~~~~A~~lk~~~~k-~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~--~~d~~~~~~l~~~-~d~l 112 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAK-ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTE--VMDPRDVEIVAEY-ADIL 112 (260)
T ss_pred CHHHHHHHHHHHHHHHHH-hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEe--eCChhhHHHHHhh-CCEE
Confidence 456677777776655543 1111100 111 0012234444444444568877654 4677778888887 8887
Q ss_pred eccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCC
Q psy8190 173 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 251 (348)
Q Consensus 173 ~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~g 251 (348)
.++--. .+ ...++.+.+.|.+|.. =-|+.-+.+++...++.+++-+ ...+.+. ..|
T Consensus 113 kI~s~~~~n---------------~~LL~~~a~~gkPVil--k~G~~~t~~e~~~Ave~i~~~G--n~~i~l~----~rG 169 (260)
T TIGR01361 113 QIGARNMQN---------------FELLKEVGKQGKPVLL--KRGMGNTIEEWLYAAEYILSSG--NGNVILC----ERG 169 (260)
T ss_pred EECcccccC---------------HHHHHHHhcCCCcEEE--eCCCCCCHHHHHHHHHHHHHcC--CCcEEEE----ECC
Confidence 775422 10 1234455556665421 2244457899999999998876 4443331 224
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-c---ccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 252 TPLYGSSILDPLEFIRTIAVARITMPTSRIRM-S---AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 252 T~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s---~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|.-+. +.+...-.++.+...|..+. ..|-+ + .|+..........++..||++++.+..+
T Consensus 170 ~s~y~-~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 170 IRTFE-KATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred CCCCC-CCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 43321 11111223444444544332 11222 1 3322222556677899999998766543
No 359
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=82.14 E-value=45 Score=31.29 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEe
Q psy8190 133 DNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 212 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~ 212 (348)
+++.++.+..++.|+.+..++ .+.+.++.|.+.|++.+-++--. + .....++.+.+.|.++-.
T Consensus 76 e~~~~L~~~~~~~Gi~~~stp--fd~~svd~l~~~~v~~~KIaS~~---~-----------~n~pLL~~~A~~gkPvil- 138 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTP--FDLESADFLEDLGVPRFKIPSGE---I-----------TNAPLLKKIARFGKPVIL- 138 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEe--CCHHHHHHHHhcCCCEEEECccc---c-----------cCHHHHHHHHhcCCcEEE-
Confidence 455555555555676665443 66777777777777766653211 0 113456666667776421
Q ss_pred EeeecCCCHHHHHHHHHHHHhcCCCCC--eeec-ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc
Q psy8190 213 GIIGLSESRDQRAELIFQLANLNPYPE--SVPI-NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE 289 (348)
Q Consensus 213 ~i~Glget~e~~~~~l~~l~~l~~~~~--~i~~-~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~ 289 (348)
--|+ -|.+++...++++++-+ .. .+.+ +... .+|.+..+--++.+...+..++ ..|-+| -|.
T Consensus 139 -StGm-atl~Ei~~Av~~i~~~G--~~~~~i~llhC~s--------~YP~~~~~~nL~~I~~Lk~~f~-~pVG~S--dHt 203 (329)
T TIGR03569 139 -STGM-ATLEEIEAAVGVLRDAG--TPDSNITLLHCTT--------EYPAPFEDVNLNAMDTLKEAFD-LPVGYS--DHT 203 (329)
T ss_pred -ECCC-CCHHHHHHHHHHHHHcC--CCcCcEEEEEECC--------CCCCCcccCCHHHHHHHHHHhC-CCEEEC--CCC
Confidence 1233 48999999999998876 32 1222 2211 1222223345667777776664 334344 366
Q ss_pred cchhhHHHHHHhCccee
Q psy8190 290 MGETTQAFCFLAGANSI 306 (348)
Q Consensus 290 l~~~~~~~~l~~GAn~~ 306 (348)
.+......++..||+.+
T Consensus 204 ~G~~~~~aAvalGA~iI 220 (329)
T TIGR03569 204 LGIEAPIAAVALGATVI 220 (329)
T ss_pred ccHHHHHHHHHcCCCEE
Confidence 66667778899999955
No 360
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=82.09 E-value=5 Score=34.93 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc---------CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAA---------WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 169 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg---------~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~ 169 (348)
..+|++..+ .+..-..++++-. |-+. ....+.+.+.+++++..|+.+++-.. .+++.++.-++.|.
T Consensus 72 ~teEml~ia---~~~kP~~vtLVPe~r~evTTegGlD~-~~~~~~l~~~v~~L~~~GirVSLFiD-~d~~qi~aa~~~gA 146 (243)
T COG0854 72 PTEEMLAIA---LKTKPHQVTLVPEKREEVTTEGGLDV-AGQLDKLRDAVRRLKNAGIRVSLFID-PDPEQIEAAAEVGA 146 (243)
T ss_pred chHHHHHHH---HhcCCCeEEeCCCchhhcccccchhh-hhhhhhHHHHHHHHHhCCCeEEEEeC-CCHHHHHHHHHhCC
Confidence 356664443 3444566666532 1111 12467889999999999999876554 78899999999999
Q ss_pred CeeeccCCCCHHHHhccCC---CCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHH
Q psy8190 170 DYYNHNLDTSPKLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIF 229 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~---~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~ 229 (348)
++|.+--.--.+.++.-.+ ..-++..-.+.+.+.+.|+.++.+ -|+ ..+...++....
T Consensus 147 ~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnAG--HgLty~Nv~~~a~~~~ 208 (243)
T COG0854 147 PRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNAG--HGLTYHNVKPLAAIPP 208 (243)
T ss_pred CEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCceEecC--CCccccchHHHhcCCc
Confidence 9998632210111110000 012334555666777788888765 344 445444444433
No 361
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=81.80 E-value=18 Score=32.77 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=50.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCC-------------------------CCcccHHHHHHHHHHHHh-cCcEEE
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRE-------------------------LKDRDLDNIENMICEVKK-IGLETC 150 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~-------------------------~~~~~~~~~~~l~~~i~~-~~~~i~ 150 (348)
.++++|..+..+.+.+.|+.-+.+..-.++ -.....+.+.++++.+++ .+.++.
T Consensus 127 DLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~ 206 (263)
T CHL00200 127 DLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPII 206 (263)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEE
Confidence 356777776666677777766655533110 001123456667777776 366677
Q ss_pred EecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 151 LTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 151 ~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+-.|.-++|.++.+.++|.|.+-+|
T Consensus 207 vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 207 LGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred EECCcCCHHHHHHHHhcCCCEEEEC
Confidence 7777777888888888888887764
No 362
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=81.75 E-value=19 Score=33.46 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCee--e--EeEeee
Q psy8190 197 NTLKNVRNVGINI--C--CGGIIG 216 (348)
Q Consensus 197 ~~i~~~~~~G~~i--~--~~~i~G 216 (348)
+.++.+++.|+.+ | +.+..|
T Consensus 224 ~~i~~l~~~gi~v~~cP~Sn~~l~ 247 (324)
T TIGR01430 224 ELLKRLAQENITLEVCPTSNVALG 247 (324)
T ss_pred HHHHHHHHcCceEEECCccccccc
Confidence 5678888888754 3 444555
No 363
>smart00642 Aamy Alpha-amylase domain.
Probab=81.68 E-value=4 Score=34.14 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy8190 190 RDYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
.+.++..+.++.+|+.|+.+..++++.+ +.
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3789999999999999999999999988 55
No 364
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=81.51 E-value=10 Score=34.57 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++++++.+.|++.|.+-. .+++.+.+.++.++.....+.+ -.|.++.+.+..+.+.|+|.++.|.=+
T Consensus 199 eea~ea~~~GaDiI~lDn-------~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 199 EQALTVLQASPDILQLDK-------FTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred HHHHHHHHcCcCEEEECC-------CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcce
Confidence 344455667887776632 3557888888888753333332 256799999999999999999987533
No 365
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=81.46 E-value=46 Score=31.01 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHhCCCeeeccCCC-CHHHHhc-cCC--CCCHHHHHHHHHHHHH-cCCeeeEeEeeec--CCCHHHHHHHHHHHHhc
Q psy8190 162 YRLKKVGLDYYNHNLDT-SPKLYGD-IIS--TRDYENRLNTLKNVRN-VGINICCGGIIGL--SESRDQRAELIFQLANL 234 (348)
Q Consensus 162 ~~Lk~aG~~~i~~g~et-~~e~l~~-i~~--~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl--get~e~~~~~l~~l~~l 234 (348)
+.+.++|++.|.+++.- .+.+.+. .+. -..++...+.++.+++ .++++++-+=+|. .++.++..+.++.+.+.
T Consensus 74 ~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~ 153 (318)
T TIGR00742 74 KIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGK 153 (318)
T ss_pred HHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHc
Confidence 34445677777777755 3443321 111 1367777788888876 4778887777777 23556777777778777
Q ss_pred CCCCCeeecccccc
Q psy8190 235 NPYPESVPINNLVQ 248 (348)
Q Consensus 235 ~~~~~~i~~~~l~P 248 (348)
+ ++.+.++.-..
T Consensus 154 G--~~~itvHgRt~ 165 (318)
T TIGR00742 154 G--CQNFIVHARKA 165 (318)
T ss_pred C--CCEEEEeCCch
Confidence 7 77776665543
No 366
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=81.32 E-value=23 Score=33.14 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCccc--------HHHHHHHHHHHHhcCc-EEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRD--------LDNIENMICEVKKIGL-ETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~--------~~~~~~l~~~i~~~~~-~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+.++...+.|+..|++... +....+ ..++.++++.+++.+. .+.++.-.-....++.+.+.|++.+++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~--~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDS--SGSLISPEMFEEFILPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEET--TGGGS-HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCccccccc--ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCCEEEEc
Confidence 3344456779998877663 122222 3356667777777665 5544433234448999999999988864
Q ss_pred C
Q psy8190 176 L 176 (348)
Q Consensus 176 ~ 176 (348)
-
T Consensus 264 ~ 264 (343)
T PF01208_consen 264 E 264 (343)
T ss_dssp T
T ss_pred C
Confidence 3
No 367
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=81.15 E-value=40 Score=31.50 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccH--------HHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDL--------DNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~--------~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
+.+.++...+.|+..|.+..........+. +++.++++.+++.+....+ ..|.. ...+..+++.|++.++
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~-~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT-QPILRDIANNGCFGFS 260 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc-hhhHHHHHHhCCCEEe
Confidence 344445556779988766553211112222 3445566666654322222 23433 4568889999999877
Q ss_pred cc
Q psy8190 174 HN 175 (348)
Q Consensus 174 ~g 175 (348)
+.
T Consensus 261 ~d 262 (340)
T TIGR01463 261 VD 262 (340)
T ss_pred ec
Confidence 53
No 368
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=81.12 E-value=7.6 Score=35.60 Aligned_cols=14 Identities=0% Similarity=-0.092 Sum_probs=9.7
Q ss_pred cCCCCCHHHHHHhh
Q psy8190 25 QSLIWKLDEVINLF 38 (348)
Q Consensus 25 ~~~~ls~~e~~~Ll 38 (348)
+++.+|.+|.+...
T Consensus 57 D~~~~~~~e~~~~~ 70 (285)
T TIGR02320 57 DIEEASWTQRLDVV 70 (285)
T ss_pred CcCcCCHHHHHHHH
Confidence 45668888887654
No 369
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=81.03 E-value=13 Score=34.81 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHH-hCCCeeeccCCC-
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK-VGLDYYNHNLDT- 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~-aG~~~i~~g~et- 178 (348)
+..+.++.+.+.|+..|.+.+......... ..-.++++.+++ .++++..+.|..+.+.++.+.+ .|+|.|.+|=..
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G-~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNG-EAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCC-CcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 566667777788999888876521111001 011356666665 4788888899889988888886 699999887443
Q ss_pred -CHHHHhcc
Q psy8190 179 -SPKLYGDI 186 (348)
Q Consensus 179 -~~e~l~~i 186 (348)
+|.+++.+
T Consensus 229 ~nP~if~~~ 237 (321)
T PRK10415 229 GRPWIFREI 237 (321)
T ss_pred cCChHHHHH
Confidence 45555543
No 370
>TIGR03586 PseI pseudaminic acid synthase.
Probab=80.88 E-value=49 Score=30.97 Aligned_cols=176 Identities=15% Similarity=0.139 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCC-C---CC------------------------cccHHHHHHHHHHHHhcCcEEE
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWR-E---LK------------------------DRDLDNIENMICEVKKIGLETC 150 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~-~---~~------------------------~~~~~~~~~l~~~i~~~~~~i~ 150 (348)
+.+...+.++.+.+.|++-|-|+.-.. . +. ..+.+++.++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 567777777788888888776664210 0 00 0112333344444444565554
Q ss_pred EecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHH
Q psy8190 151 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQ 230 (348)
Q Consensus 151 ~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~ 230 (348)
++ ..+.+.++.+.+.|++.+.++--. -.....++.+.+.|.++- +=-|+ -|.+++...++.
T Consensus 95 st--pfd~~svd~l~~~~v~~~KI~S~~--------------~~n~~LL~~va~~gkPvi--lstG~-~t~~Ei~~Av~~ 155 (327)
T TIGR03586 95 SS--PFDETAVDFLESLDVPAYKIASFE--------------ITDLPLIRYVAKTGKPII--MSTGI-ATLEEIQEAVEA 155 (327)
T ss_pred Ec--cCCHHHHHHHHHcCCCEEEECCcc--------------ccCHHHHHHHHhcCCcEE--EECCC-CCHHHHHHHHHH
Confidence 33 355666666666666655542110 012344555666677653 12234 489999999999
Q ss_pred HHhcCCCCCeee-cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy8190 231 LANLNPYPESVP-INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 231 l~~l~~~~~~i~-~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
+.+-+ ...+. ++...-+| || ...-.++.+...+..++ ..|-+|. |..+......++.+||+-+
T Consensus 156 i~~~g--~~~i~LlhC~s~YP-~~-------~~~~nL~~i~~lk~~f~-~pVG~SD--Ht~G~~~~~aAva~GA~iI 219 (327)
T TIGR03586 156 CREAG--CKDLVLLKCTSSYP-AP-------LEDANLRTIPDLAERFN-VPVGLSD--HTLGILAPVAAVALGACVI 219 (327)
T ss_pred HHHCC--CCcEEEEecCCCCC-CC-------cccCCHHHHHHHHHHhC-CCEEeeC--CCCchHHHHHHHHcCCCEE
Confidence 98876 33332 22222122 22 22334566666666553 3343342 6666677788999999854
No 371
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=80.71 E-value=28 Score=32.72 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=63.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
..+.+..++++..+.+.|..-|.+.- |.....+.+.++.+.+++.+.++-+-.. -++...+-.-.++ ++.+-++
T Consensus 27 t~Dv~atv~QI~~L~~aGceivRvav----p~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~-v~kiRIN 101 (359)
T PF04551_consen 27 TRDVEATVAQIKRLEEAGCEIVRVAV----PDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEA-VDKIRIN 101 (359)
T ss_dssp TT-HHHHHHHHHHHHHCT-SEEEEEE-----SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC--SEEEE-
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcC----CCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHH-hCeEEEC
Confidence 35778888899999999998887743 3345677788888887775443322221 2333333334455 7777776
Q ss_pred CCC-CHHHHhccCCCCC-HHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 176 LDT-SPKLYGDIISTRD-YENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 176 ~et-~~e~l~~i~~~~~-~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
... .++..+ ...+ .+.+.+.++.+++.|+.+..++=-|-
T Consensus 102 PGNi~~~~~~---~~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 102 PGNIVDEFQE---ELGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp TTTSS----S---S-SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred CCcccccccc---cccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 655 331111 1123 56666677777777777766665554
No 372
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=80.55 E-value=20 Score=33.38 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCC-Cccc-HHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHH-HhCCCeeeccC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWREL-KDRD-LDNIENMICEVKK-IGLETCLTLGMLNENQAYRLK-KVGLDYYNHNL 176 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~-~~~~-~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk-~aG~~~i~~g~ 176 (348)
++..+.++.+.+.|+..+.+.+..... +..+ .+ .+.++.+++ .++++..|.+..+.+.++.+. ..|+|.|.+|=
T Consensus 148 ~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~--~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR 225 (312)
T PRK10550 148 ERKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN--WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGR 225 (312)
T ss_pred hHHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc--HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence 556777777888899999887652111 1111 11 256666665 478888888888998888765 57999999975
Q ss_pred CC--CHHHHhccCC---CCCHHHHHHHHH
Q psy8190 177 DT--SPKLYGDIIS---TRDYENRLNTLK 200 (348)
Q Consensus 177 et--~~e~l~~i~~---~~~~~~~~~~i~ 200 (348)
.. +|.+++.+.. ..+++++++.+.
T Consensus 226 g~l~nP~lf~~~~~g~~~~~~~e~~~~~~ 254 (312)
T PRK10550 226 GALNIPNLSRVVKYNEPRMPWPEVVALLQ 254 (312)
T ss_pred HhHhCcHHHHHhhcCCCCCCHHHHHHHHH
Confidence 54 5777776642 124555544443
No 373
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=80.36 E-value=13 Score=29.80 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=48.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+++++++.+. +.++.-|.+++-. ....+.+.++++.+++.+. .+.+ -.|....+..+.|+++|++++.
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~----~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA----GGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch----hhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 57888887654 5578888887642 1245678888888988643 2222 3556778889999999999875
No 374
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=80.16 E-value=36 Score=33.53 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHHH-HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC----C-C----CHHHHHHHHHhCC
Q psy8190 100 IESVIT-AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG----M-L----NENQAYRLKKVGL 169 (348)
Q Consensus 100 ~eei~~-~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g----~-l----~~e~l~~Lk~aG~ 169 (348)
+++|++ -++.+.+.|++.|.+.+. + -+.+.+...++.+++.|.++.++.. . - -.+.++.+.++|+
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~---l--nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Ga 177 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDA---L--NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGA 177 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEccc---C--CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCC
Confidence 345444 456677889999877654 2 2567888888988887766433211 1 1 1256778888999
Q ss_pred Ceeecc--CCC-CH-HHH---hccCC---------CC-CHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 170 DYYNHN--LDT-SP-KLY---GDIIS---------TR-DYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 170 ~~i~~g--~et-~~-e~l---~~i~~---------~~-~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
++|.+. ... .| +++ +.++. .| +..-.....-.+-++|..+.-.-+-|+
T Consensus 178 d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~ 242 (468)
T PRK12581 178 DSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPF 242 (468)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeecccc
Confidence 999873 222 22 222 22221 12 444455555556678875332224455
No 375
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=80.10 E-value=58 Score=32.25 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy8190 155 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 155 ~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.-..+.++.|.++|++.+-+. ++ + +|+ +..++.++.+|+.- ....+|.|.+-|.+...+ |.+.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D--~a-------~-g~~-~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~----l~~~ 286 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVID--TA-------H-GHQ-VKMISAIKAVRALD--LGVPIVAGNVVSAEGVRD----LLEA 286 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEe--CC-------C-CCc-HHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHH----HHHh
Confidence 345689999999999987752 21 1 333 67788888888852 234556687778776544 4456
Q ss_pred CCCCCeeecccccccCCCCC----C-CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC
Q psy8190 235 NPYPESVPINNLVQIKGTPL----Y-GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l----~-~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
+ .+.|.+.. -+||-. . ....+...-.++....++.. +..+-+.+|-.+ +..-..++.+||+.+|.|
T Consensus 287 G--~d~i~vg~---g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~--~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 287 G--ANIIKVGV---GPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRH--PRDVALALAAGASNVMVG 357 (475)
T ss_pred C--CCEEEECC---cCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCC--HHHHHHHHHcCCCEEeec
Confidence 6 67665322 122221 1 22344555555665555554 333434444333 334456899999999876
Q ss_pred Ce
Q psy8190 310 DK 311 (348)
Q Consensus 310 ~~ 311 (348)
..
T Consensus 358 ~~ 359 (475)
T TIGR01303 358 SW 359 (475)
T ss_pred hh
Confidence 53
No 376
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.07 E-value=13 Score=32.96 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.++.+.+.|+..+++.+-.. .....+.+.+.++.+. ..+++.++.|..+.+.+..++++|++.+.++
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 3344455678999988765311 1122344444333332 3688888999999999999999999998864
No 377
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=80.05 E-value=48 Score=30.37 Aligned_cols=194 Identities=16% Similarity=0.116 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHh-cCcEEEEecCCCCHH----HHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHH
Q psy8190 132 LDNIENMICEVKK-IGLETCLTLGMLNEN----QAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVR 203 (348)
Q Consensus 132 ~~~~~~l~~~i~~-~~~~i~~~~g~l~~e----~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~ 203 (348)
.+.+.+.++.... .+.++.++....+.+ .++.+.++| ++.+.+++-+ ....+ .-.-..+.+...+.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~-g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG-GIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCC-ccccccCHHHHHHHHHHHH
Confidence 4444444443332 344566665434433 345555553 7888888766 32110 0001246777788888888
Q ss_pred Hc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccc------cCCCCCC-----CCCCCCH-HHHHHHHH
Q psy8190 204 NV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ------IKGTPLY-----GSSILDP-LEFIRTIA 270 (348)
Q Consensus 204 ~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P------~~gT~l~-----~~~~~~~-~~~~~~~a 270 (348)
+. ++++.+-+ ..+.++..+..+.+.+.+ ++.+.++.-++ ..++|.. ....+.. .-.++.+.
T Consensus 154 ~~~~~pv~vKi----~~~~~~~~~~a~~l~~~G--~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~ 227 (300)
T TIGR01037 154 DKTDVPVFAKL----SPNVTDITEIAKAAEEAG--ADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVY 227 (300)
T ss_pred HhcCCCEEEEC----CCChhhHHHHHHHHHHcC--CCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHH
Confidence 74 55544432 234567777888888888 78877642211 1111111 1111110 11233333
Q ss_pred HHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc----hHHHHHHHHcCCCchh
Q psy8190 271 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT----NDDSKLLKKLGINTRN 336 (348)
Q Consensus 271 ~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~----~~~~~~i~~~G~~p~~ 336 (348)
..+..++ ..|-..+|-.+ .+.....+.+||+.++.+--++ ..+.-. +++.+++.+.||.-+.
T Consensus 228 ~i~~~~~-ipvi~~GGI~s--~~da~~~l~~GAd~V~igr~~l-~~p~~~~~i~~~l~~~~~~~g~~~~~ 293 (300)
T TIGR01037 228 DVYKMVD-IPIIGVGGITS--FEDALEFLMAGASAVQVGTAVY-YRGFAFKKIIEGLIAFLKAEGFTSIE 293 (300)
T ss_pred HHHhcCC-CCEEEECCCCC--HHHHHHHHHcCCCceeecHHHh-cCchHHHHHHHHHHHHHHHcCCCCHH
Confidence 3343332 22222233222 3445556789999997764332 222111 4668888899987443
No 378
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=79.96 E-value=15 Score=32.04 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh---cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 108 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK---IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 108 ~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~---~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+.+.+.|+..+.+++-+.+....+. +.++.+++ .+..+.+..|..+.+.++.+.++|++.+-+|
T Consensus 135 ~~~~~~g~~~i~~t~~~~~~~~~~~----~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivG 201 (217)
T cd00331 135 ERALALGAKIIGINNRDLKTFEVDL----NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIG 201 (217)
T ss_pred HHHHHcCCCEEEEeCCCccccCcCH----HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEEC
Confidence 3445567887766643211122233 44444443 2567878888999999999999999999875
No 379
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=79.92 E-value=21 Score=35.01 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++-.+.++.+.+.|+.-|.+... +. .-....+.++.+++. ++.+.+ .+..+.+..+.+.++|++.|-+++..
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a--~g---~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg~g~ 296 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSS--HG---HSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVGIGP 296 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECC--CC---cHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEECCCC
Confidence 35556677788889999888654 11 225688889999875 344433 34789999999999999999876533
Q ss_pred -CHHHHhccCC-C-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccc
Q psy8190 179 -SPKLYGDIIS-T-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 246 (348)
Q Consensus 179 -~~e~l~~i~~-~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l 246 (348)
+-..-+.+.. + -......++.+.+++.|+++-++ |=-.+..|+...+ .++ .+.+-+-.+
T Consensus 297 G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviad---GGi~~~~di~kAl----a~G--A~~V~~G~~ 358 (450)
T TIGR01302 297 GSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIAD---GGIRYSGDIVKAL----AAG--ADAVMLGSL 358 (450)
T ss_pred CcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEe---CCCCCHHHHHHHH----HcC--CCEEEECch
Confidence 1111111111 1 13455566677777788775432 1124566666554 455 555555443
No 380
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=79.89 E-value=55 Score=30.86 Aligned_cols=168 Identities=13% Similarity=0.064 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEecCC--------CCHHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHH
Q psy8190 132 LDNIENMICEVKKIGLETCLTLGM--------LNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLK 200 (348)
Q Consensus 132 ~~~~~~l~~~i~~~~~~i~~~~g~--------l~~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~ 200 (348)
.+.+.+-++..+ .++.+.+|.+. ...|..+.+++++ +|.+.+++-+ ... ........+...+.++
T Consensus 124 ~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~---g~~~~~~~~~~~eiv~ 199 (344)
T PRK05286 124 ADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP---GLRDLQYGEALDELLA 199 (344)
T ss_pred HHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC---CcccccCHHHHHHHHH
Confidence 344444444333 45666666542 2346666666665 8999888754 211 1112445566666666
Q ss_pred HHHHc-C-----CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC-CC---CCC-CCCCCC----HHHH
Q psy8190 201 NVRNV-G-----INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK-GT---PLY-GSSILD----PLEF 265 (348)
Q Consensus 201 ~~~~~-G-----~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~-gT---~l~-~~~~~~----~~~~ 265 (348)
.+++. + +++.+-+- .+-+.+++.+..+.+.+.+ .+.+.++.-++.. +. ++. .....+ -...
T Consensus 200 aVr~~~~~~~~~~PV~vKls--p~~~~~~~~~ia~~l~~~G--adgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~ 275 (344)
T PRK05286 200 ALKEAQAELHGYVPLLVKIA--PDLSDEELDDIADLALEHG--IDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERS 275 (344)
T ss_pred HHHHHHhccccCCceEEEeC--CCCCHHHHHHHHHHHHHhC--CcEEEEeCCccccccccccccCCCCCCcccHHHHHHH
Confidence 66652 3 55443322 3456677888888888887 7887765433211 11 110 011111 1234
Q ss_pred HHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeC
Q psy8190 266 IRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 266 ~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
++.+...+..++ +..|-.++|-.+ .+.....+.+||+.++.+
T Consensus 276 l~~v~~l~~~~~~~ipIig~GGI~s--~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGVGGIDS--AEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCC--HHHHHHHHHcCCCHHHHH
Confidence 556666665554 333444444322 333445667999998654
No 381
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.74 E-value=31 Score=33.34 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC-
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
++-.+.++.+.+.|++-|.+... ++ .-..+.++++.+++....+.+ -.+..+.+..+.+.++|+|.|.+|+..
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a--~g---~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSA--HG---HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECC--CC---CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 34567778888899999988655 22 125788889999874322322 335789999999999999999887754
Q ss_pred C---HHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 179 S---PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 179 ~---~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+ -+....+.. -......++-+.+++.++++.++ |--.+.+|+.+.+. ++ .+.+-+
T Consensus 227 s~c~tr~~~g~g~-p~ltai~~v~~~~~~~~vpVIAd---GGI~~~~Di~KALa----lG--A~aVmv 284 (404)
T PRK06843 227 SICTTRIVAGVGV-PQITAICDVYEVCKNTNICIIAD---GGIRFSGDVVKAIA----AG--ADSVMI 284 (404)
T ss_pred cCCcceeecCCCC-ChHHHHHHHHHHHhhcCCeEEEe---CCCCCHHHHHHHHH----cC--CCEEEE
Confidence 2 111111111 13445555555556667664333 22357777776654 55 455444
No 382
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=79.51 E-value=24 Score=30.85 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=59.1
Q ss_pred CCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC----------CCCHHHHHHHHHhCCCeeeccCCCCHHHHh
Q psy8190 115 ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG----------MLNENQAYRLKKVGLDYYNHNLDTSPKLYG 184 (348)
Q Consensus 115 ~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g----------~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~ 184 (348)
++.|-+++| + .+..+.+.+.+-+.-.++.++.+. +| .--++.++..++.|++.+.++-.+.
T Consensus 44 VDfvKfgwG-T-~~Li~kd~V~ekid~y~e~~i~v~--pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i----- 114 (258)
T COG1809 44 VDFVKFGWG-T-SSLIDKDQVKEKIDMYKENDIYVF--PGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTI----- 114 (258)
T ss_pred eeeeeeccc-c-cccccHHHHHHHHHHHHHcCceec--CCceEEEeehhcccHHHHHHHHHHcCccEEEecCCee-----
Confidence 566667666 2 234566667777777776554442 22 1223667777777887776543331
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec--C-----CCHHHHHHHHHHHHhcC
Q psy8190 185 DIISTRDYENRLNTLKNVRNVGINICCGGIIGL--S-----ESRDQRAELIFQLANLN 235 (348)
Q Consensus 185 ~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl--g-----et~e~~~~~l~~l~~l~ 235 (348)
..+.++..+.++.+.+.|+.+-+- +|. + ++++|+++.+...-+.+
T Consensus 115 ----~m~~eek~~lIe~a~d~Gf~vlsE--vGkk~~e~~~~l~~~d~~k~i~~dvdaG 166 (258)
T COG1809 115 ----PMSTEEKCRLIERAVDEGFMVLSE--VGKKDPESDSALSPDDRVKLINDDVDAG 166 (258)
T ss_pred ----ecchHHHHHHHHHHHhcccEEehh--hcccCcchhhhcChHHHHHHHHHHHHcc
Confidence 134556666677777777655433 222 1 34555665555555444
No 383
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=79.35 E-value=12 Score=38.00 Aligned_cols=164 Identities=12% Similarity=0.092 Sum_probs=88.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEe----cCCCCHHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLT----LGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~----~g~l~~e~l~~Lk~aG~~~i 172 (348)
.+++.+++.++.+.+.|+..|+|.+.. ....+..+.++++.+++. ++++.++ .|.- ...+-.-.++|++.|
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDta---G~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla-~an~laAieaGad~i 226 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDMA---GLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLA-SICHYEAVLAGCNHI 226 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcc---cCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcH-HHHHHHHHHhCCCEE
Confidence 578899999999999999999996641 123567888888888873 4544443 3333 233333458899998
Q ss_pred eccCCC-CHHHHhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCC----CCCeee-ccc
Q psy8190 173 NHNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP----YPESVP-INN 245 (348)
Q Consensus 173 ~~g~et-~~e~l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~----~~~~i~-~~~ 245 (348)
...+.. +.. .++ ..+..+.++ +..|+.+..+ -+...++.+.+..+++... .+..+. -..
T Consensus 227 D~ai~glGg~------tGn~~tE~lv~~L---~~~g~~tgid-----l~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~ 292 (596)
T PRK14042 227 DTAISSFSGG------ASHPPTEALVAAL---TDTPYDTELD-----LNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQ 292 (596)
T ss_pred EeccccccCC------CCcHhHHHHHHHH---HhcCCCCCCC-----HHHHHHHHHHHHHHHHHHhhcCCccccCCccee
Confidence 866644 211 122 444444444 4456554332 1222333344444333210 011111 112
Q ss_pred ccccCCCCCCCC-------CCCC-HHHHHHHHHHHHHHCCCC
Q psy8190 246 LVQIKGTPLYGS-------SILD-PLEFIRTIAVARITMPTS 279 (348)
Q Consensus 246 l~P~~gT~l~~~-------~~~~-~~~~~~~~a~~R~~lp~~ 279 (348)
.+..||--+.+. ...+ -++.++.+..+|..+...
T Consensus 293 ~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~~ 334 (596)
T PRK14042 293 LYQVPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGYP 334 (596)
T ss_pred ecCCCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCC
Confidence 334566554431 2222 356777888888877653
No 384
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=79.31 E-value=4.7 Score=34.89 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe--cCCC--CHHHHHHHHHhCCCeee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LGML--NENQAYRLKKVGLDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~--~g~l--~~e~l~~Lk~aG~~~i~ 173 (348)
..+.+.+.++.+++.|++.|.|+--.. ....+.+.+.++++..+ +++++.+ ...+ ..+-++.|.+.|+++|.
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~~-dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALTE-DGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRVL 145 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BET-TSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeECC-CCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEE
Confidence 357777888889999999998865422 23467888888888877 5666654 2222 34678999999999986
No 385
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.20 E-value=13 Score=34.02 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=45.0
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++.++.+.|++.|.+. ..+++.+.++++.+++. .+.+.+ .|-++.+.+..+.+.|+|.++++--+
T Consensus 208 ea~eA~~~GaD~I~LD-------n~~~e~l~~av~~~~~~~~~i~leA-sGGIt~~ni~~ya~tGvD~Isvgsl~ 274 (288)
T PRK07428 208 QVQEALEYGADIIMLD-------NMPVDLMQQAVQLIRQQNPRVKIEA-SGNITLETIRAVAETGVDYISSSAPI 274 (288)
T ss_pred HHHHHHHcCCCEEEEC-------CCCHHHHHHHHHHHHhcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEEchhh
Confidence 3334556788777663 12457888888877653 344443 45689999999999999999987543
No 386
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=79.09 E-value=12 Score=33.55 Aligned_cols=65 Identities=12% Similarity=-0.052 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
++.++...+.|++.+++++-+ . . +.+.+.++++. .++++.+..|..+ +.++.+.++|++++.+|=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg--~-~-n~~~i~~i~~~---~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLG--P-N-NDDAAKEALHA---YPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECC--C-C-cHHHHHHHHHh---CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 445566778899999998752 1 2 44444444432 4677877777765 999999999999999753
No 387
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=78.93 E-value=10 Score=35.60 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCC--cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhC-CCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~--~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG-~~~i~ 173 (348)
.++++.++.++.+.+.|+..|.+++|...+. ........++.+.+++ .++++.++.+..+.+.++.+.+.| +|-|.
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 3567777777777777888887776631110 1011223456666665 356666666666777777777765 77777
Q ss_pred cc
Q psy8190 174 HN 175 (348)
Q Consensus 174 ~g 175 (348)
++
T Consensus 304 ~g 305 (337)
T PRK13523 304 IG 305 (337)
T ss_pred hh
Confidence 65
No 388
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=78.93 E-value=16 Score=32.43 Aligned_cols=80 Identities=15% Similarity=0.021 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
++.++.++.+.+.|+..+++.++.. ....++ +.++.++ .++++..|.|..+.+.+..+.+.|+|.|.+|=...|
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~-g~~ad~----~~I~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~~~p 225 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP-GNHADL----KKIRDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVARASLP 225 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC-CCCCcH----HHHHHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCCCCc
Confidence 4566667777788998887765521 112233 3344444 468888889999999999998999999998654445
Q ss_pred HHHhcc
Q psy8190 181 KLYGDI 186 (348)
Q Consensus 181 e~l~~i 186 (348)
.+++.+
T Consensus 226 ~~~~~~ 231 (233)
T cd02911 226 ENIEWL 231 (233)
T ss_pred hHHHHh
Confidence 555543
No 389
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=78.89 E-value=24 Score=32.75 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHH-HhCCCeeeccCCC-
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLK-KVGLDYYNHNLDT- 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk-~aG~~~i~~g~et- 178 (348)
+..+.++.+.+.|+..|.+.+..... ........+.++.+++ .++++..+.|..+.+.+..+. ..|+|.|.+|=..
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~-~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l 226 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQ-GYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGAL 226 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccc-cCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhh
Confidence 45566667778899988876541111 1111223567777776 478888899999988888777 6799999987443
Q ss_pred -CHHHHhcc
Q psy8190 179 -SPKLYGDI 186 (348)
Q Consensus 179 -~~e~l~~i 186 (348)
+|.++..+
T Consensus 227 ~~P~l~~~~ 235 (319)
T TIGR00737 227 GNPWLFRQI 235 (319)
T ss_pred hCChHHHHH
Confidence 45555544
No 390
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=78.87 E-value=52 Score=30.08 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC---------------CHHHHHHHHH-h
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML---------------NENQAYRLKK-V 167 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l---------------~~e~l~~Lk~-a 167 (348)
.+.++.+.+.|++.|-+-+. ..+.....+...++++..+..++.+....|.+ ++|++..+.+ .
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s-~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~t 165 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGS-HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKET 165 (282)
T ss_pred HHHHHHHHHcCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHH
Q ss_pred CCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHH
Q psy8190 168 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIF 229 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~ 229 (348)
|+|.+-+++.+.-.+|+. .+..+++...+..+.. ++++ ++.|- |=+.+++.+.+.
T Consensus 166 gvD~Lavs~Gt~hg~~~~-~~~l~~e~L~~i~~~~---~iPl---v~hGgSGi~~e~i~~~i~ 221 (282)
T TIGR01859 166 GVDYLAAAIGTSHGKYKG-EPGLDFERLKEIKELT---NIPL---VLHGASGIPEEQIKKAIK 221 (282)
T ss_pred CcCEEeeccCccccccCC-CCccCHHHHHHHHHHh---CCCE---EEECCCCCCHHHHHHHHH
No 391
>PRK04326 methionine synthase; Provisional
Probab=78.78 E-value=56 Score=30.40 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEE--EEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
-+..+++.+.+.|++.|.|..-.-.......+.+.+.++.+.+ .+..+ ++..|. ....++.|.+.|++.+++..-.
T Consensus 162 ~~~~~i~~l~~~G~~~iqidEP~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~-~~~~~~~l~~~~vd~i~~d~~~ 240 (330)
T PRK04326 162 VINEEIKNLVEAGAKYIQIDEPALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGD-YSRIAPYILEFPVDQFDLEFAN 240 (330)
T ss_pred HHHHHHHHHHHCCCCEEEecCchhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCC-cHHHHHHHHhCCCCEEEEEeCC
Confidence 3444556677789986766432101111223344444444433 23333 334465 4567899999999999975421
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEeeec---CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 179 SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGL---SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Gl---get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
+. . +.++.+++. |-.+..+++=+- -+++|++.+.++.+.+. .+ ...++..|+..
T Consensus 241 ---------~~--~----~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~---~~---~~~~~lsp~Cg 299 (330)
T PRK04326 241 ---------GN--Y----KLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEY---VP---PEKLYINPDCG 299 (330)
T ss_pred ---------CC--c----hhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHh---CC---hhhEEECCCCC
Confidence 01 1 233345554 434566655543 47889998888887772 21 12444455555
Q ss_pred CCCCCCCCHHHHHHHHH
Q psy8190 254 LYGSSILDPLEFIRTIA 270 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a 270 (348)
+...+...+.+-++.+.
T Consensus 300 l~~~~~~~a~~kl~~l~ 316 (330)
T PRK04326 300 LKLLPREIAYQKLVNMV 316 (330)
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 54433333344344333
No 392
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=78.77 E-value=46 Score=29.40 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH-hcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~-~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
++..+.++.+...|-+-|.++|. ...+.+.+.+++++++ ..++++.+-|+ +...++=..+.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS----~gvt~~~~~~~v~~ik~~~~lPvilfP~-------------~~~~is~~aDav 90 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGS----DGVTEENVDNVVEAIKERTDLPVILFPG-------------SPSGISPYADAV 90 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCc----ccccHHHHHHHHHHHHhhcCCCEEEecC-------------ChhccCccCCeE
Q ss_pred C-HHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeecCCC-------------HHHHHHHHHHHHhcCCCCCeee
Q psy8190 179 S-PKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSES-------------RDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 179 ~-~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Glget-------------~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
. +.+++.-.+..-...-.+....+.+.++.+. ..++++.+.+ .+++........++- .
T Consensus 91 ff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~------g 164 (240)
T COG1646 91 FFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYL------G 164 (240)
T ss_pred EEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHh------C
Q ss_pred cccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCchH
Q psy8190 243 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTND 322 (348)
Q Consensus 243 ~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~~~ 322 (348)
+..+...-|+-..+..++ ...|..+....+-..+|-.+ ++.......+|||.++.|. +.-.+....-+
T Consensus 165 ~~~~YlEagsga~~Pv~~---------e~v~~v~~~~~LivGGGIrs--~E~A~~~a~agAD~IVtG~-iiee~~~~~~~ 232 (240)
T COG1646 165 MPVVYLEAGSGAGDPVPV---------EMVSRVLSDTPLIVGGGIRS--PEQAREMAEAGADTIVTGT-IIEEDPDKALE 232 (240)
T ss_pred CeEEEEEecCCCCCCcCH---------HHHHHhhccceEEEcCCcCC--HHHHHHHHHcCCCEEEECc-eeecCHHHHHH
Q ss_pred HHHHHHHc
Q psy8190 323 DSKLLKKL 330 (348)
Q Consensus 323 ~~~~i~~~ 330 (348)
..+.+++.
T Consensus 233 ~v~~~k~~ 240 (240)
T COG1646 233 TVEAIKSA 240 (240)
T ss_pred HHHHhhcC
No 393
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=78.65 E-value=52 Score=29.87 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCC-----CCcccHHHHHHHHHHHHhc--CcEEE--EecC----CCCH-HHHHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRE-----LKDRDLDNIENMICEVKKI--GLETC--LTLG----MLNE-NQAYR 163 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~-----~~~~~~~~~~~l~~~i~~~--~~~i~--~~~g----~l~~-e~l~~ 163 (348)
++..++...+..+...|++.|+..+|+.. ......+.-.++++.+++. ++.+. ++|. .-+. +.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 57788888888888999999875555322 1112233456666666653 33333 2222 2222 34444
Q ss_pred HH---HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 164 LK---KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 164 Lk---~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
|+ ++|.+.+- | . .-.+.+...+.++.+++.|+.+ -++.|+
T Consensus 150 L~~K~~aGA~f~i----T------Q--~~fd~~~~~~~~~~~~~~gi~~--PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYAI----T------Q--LFFDNDDYYRFVDRCRAAGIDV--PIIPGI 192 (272)
T ss_pred HHHHHHcCCCeEe----e------c--cccCHHHHHHHHHHHHHcCCCC--CEeccc
Confidence 44 67887443 1 0 1245566677777888888754 455555
No 394
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.63 E-value=50 Score=30.90 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
+..+.++.+.+.|++.|.+.....+ .+...++++.+++.. +.+.+ ....+.+.++.+.++|+|.|-+++..
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~-----~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~g~G 167 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGH-----SVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGIGPG 167 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCC-----cHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECCCCC
Confidence 3445566677789998877543111 156778888888754 44433 34578899999999999999876533
Q ss_pred CHHHHhcc--CCC-CCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 179 SPKLYGDI--IST-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 179 ~~e~l~~i--~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+.. ..+. ..+ -.+....+..+.+++.++++..+ |=-.+..++.+.+ .++ .+.+-+
T Consensus 168 ~~~-~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~---GGI~~~~di~kAl----a~G--A~~Vmi 225 (325)
T cd00381 168 SIC-TTRIVTGVGVPQATAVADVAAAARDYGVPVIAD---GGIRTSGDIVKAL----AAG--ADAVML 225 (325)
T ss_pred cCc-ccceeCCCCCCHHHHHHHHHHHHhhcCCcEEec---CCCCCHHHHHHHH----HcC--CCEEEe
Confidence 110 0111 111 14455556666666667764321 1123556666655 355 555554
No 395
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=78.41 E-value=18 Score=32.62 Aligned_cols=60 Identities=7% Similarity=0.034 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCCCE-EEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHHHH
Q psy8190 101 ESVITAAQKAKSDGATR-FCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAYRL 164 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~-i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~~L 164 (348)
+.+.+.++.+++.|... +.+... +..+.+++.++++.+.+.+.. +++ +.|.++++.+..+
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~----~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~l 175 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMS----HMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRER 175 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEec----cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHH
Confidence 45666667777777543 233222 234567888888888776543 233 4677777655433
No 396
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=78.35 E-value=30 Score=32.66 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=48.8
Q ss_pred HHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEEecCC-------------------------
Q psy8190 107 AQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCLTLGM------------------------- 155 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~~~g~------------------------- 155 (348)
+..+.+.|+++|-|-|+... |...+.....++++..+..|+.+...+|.
T Consensus 91 i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~ 170 (347)
T PRK09196 91 CQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQ 170 (347)
T ss_pred HHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhh
Confidence 34456789999988776210 22234455556666666667776654322
Q ss_pred --CCHHHHHH-HHHhCCCeeeccCCCCHHHHhc
Q psy8190 156 --LNENQAYR-LKKVGLDYYNHNLDTSPKLYGD 185 (348)
Q Consensus 156 --l~~e~l~~-Lk~aG~~~i~~g~et~~e~l~~ 185 (348)
.+++.+.. .++-|+|.+-+++.|.--.|+.
T Consensus 171 ~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~ 203 (347)
T PRK09196 171 LLTDPEEAADFVKKTQVDALAIAIGTSHGAYKF 203 (347)
T ss_pred cCCCHHHHHHHHHHhCcCeEhhhhccccCCCCC
Confidence 13455544 4467999999999886556653
No 397
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=78.34 E-value=9.5 Score=34.32 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=39.5
Q ss_pred cCHHHHH----HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHHHHH
Q psy8190 98 LSIESVI----TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAYRLK 165 (348)
Q Consensus 98 ~~~eei~----~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~~Lk 165 (348)
.+.++++ +.++.+++.|. .+.++.- ..+..+.+++.++++.+.+.+.. +++ +.|..+++.+..+-
T Consensus 103 ~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~--~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv 174 (259)
T cd07939 103 KDRAWVLDQLRRLVGRAKDRGL-FVSVGAE--DASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELI 174 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEeec--cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHH
Confidence 4555544 45556667786 4444332 22345788999999988876543 333 57888876655443
No 398
>PRK15452 putative protease; Provisional
Probab=78.28 E-value=14 Score=36.08 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=45.5
Q ss_pred HHHHHhCCCCEEEEeccCCCC----CcccHHHHHHHHHHHHhcCcEEEEecCCCC-H-------HHHHHHHHhCCCeeec
Q psy8190 107 AQKAKSDGATRFCMGAAWREL----KDRDLDNIENMICEVKKIGLETCLTLGMLN-E-------NQAYRLKKVGLDYYNH 174 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~----~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~-~-------e~l~~Lk~aG~~~i~~ 174 (348)
++.+.+.|++.|++++...+. ...+.+.+.+.++..++.+..+.+....+. + +.++.+.++|+|.+.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 345567899999997652221 123457788888888888877766533332 2 2367777889998876
Q ss_pred c
Q psy8190 175 N 175 (348)
Q Consensus 175 g 175 (348)
+
T Consensus 96 ~ 96 (443)
T PRK15452 96 S 96 (443)
T ss_pred c
Confidence 3
No 399
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.24 E-value=16 Score=33.27 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=44.2
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC----cEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG----LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~----~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
+.++.+.|++.|.+-. .+++.+.++++.+++.+ +.+.+ .|.++.+.++.+.+.|+|.++.|-=+
T Consensus 195 a~~a~~agaDiI~LDn-------~~~e~l~~~v~~l~~~~~~~~~~lea-SGGI~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 195 ALKAAKAGADIIMLDN-------MTPEEIREVIEALKREGLRERVKIEV-SGGITPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred HHHHHHcCcCEEEECC-------CCHHHHHHHHHHHHhcCcCCCEEEEE-ECCCCHHHHHHHHHcCCCEEEeChhh
Confidence 3344566777665522 24578888888887643 33333 45679999999999999999987543
No 400
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=78.21 E-value=52 Score=29.64 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=91.1
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 182 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~ 182 (348)
.+.++.+.+.|+.-+.+.+.. ....-..+ .++.+++ .++++-..-=.+++.++..-+.+|.|.|.+-+..
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~-~~F~Gs~~----dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~---- 141 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEP-KFFGGSLE----DLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI---- 141 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--S-CCCHHHHH----HHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG----
T ss_pred HHHHHHHHhcCCCEEEEECCC-CCCCCCHH----HHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh----
Confidence 444456677899998666541 11122233 3333333 3555544444688899999999999999865533
Q ss_pred HhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCH
Q psy8190 183 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 262 (348)
Q Consensus 183 l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~ 262 (348)
-+.++..+.++.+++.|+.+-+-+ +|.+++.. +.+.+ ++.++++..-.. | . ..+.
T Consensus 142 -------L~~~~l~~l~~~a~~lGle~lVEV-----h~~~El~~----al~~~--a~iiGINnRdL~--t----f-~vd~ 196 (254)
T PF00218_consen 142 -------LSDDQLEELLELAHSLGLEALVEV-----HNEEELER----ALEAG--ADIIGINNRDLK--T----F-EVDL 196 (254)
T ss_dssp -------SGHHHHHHHHHHHHHTT-EEEEEE-----SSHHHHHH----HHHTT---SEEEEESBCTT--T----C-CBHT
T ss_pred -------CCHHHHHHHHHHHHHcCCCeEEEE-----CCHHHHHH----HHHcC--CCEEEEeCcccc--C----c-ccCh
Confidence 233455677899999999754331 35565443 44667 788888865422 1 1 1222
Q ss_pred HHHHHHHHHHHHHCCCCceecc-ccccccchhhHHHHHHhCcceeeeCCeecc
Q psy8190 263 LEFIRTIAVARITMPTSRIRMS-AGRKEMGETTQAFCFLAGANSIFYGDKLLT 314 (348)
Q Consensus 263 ~~~~~~~a~~R~~lp~~~i~~s-~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~ 314 (348)
. .....+-.+|...+.++ .|-.+ ++.......+|+|.++.|+.+..
T Consensus 197 ~----~~~~l~~~ip~~~~~iseSGI~~--~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 197 N----RTEELAPLIPKDVIVISESGIKT--PEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp H----HHHHHHCHSHTTSEEEEESS-SS--HHHHHHHCTTT-SEEEESHHHHT
T ss_pred H----HHHHHHhhCccceeEEeecCCCC--HHHHHHHHHCCCCEEEECHHHhC
Confidence 2 22223334665544443 32221 33344566799999999986643
No 401
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=78.18 E-value=19 Score=33.07 Aligned_cols=104 Identities=11% Similarity=0.030 Sum_probs=65.8
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCCCHHH---HHHHHHhCC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGMLNENQ---AYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l~~e~---l~~Lk~aG~ 169 (348)
..+.+.+.+.++.+.+.|++.+++.|. ++.+ ..+.+.-.++++...+. .+.+.+..|..+.+. .+...++|+
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~-~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFF-SLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 378899999999999999999987664 3433 45667777777765542 356666666445554 445556799
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCee
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINI 209 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i 209 (348)
+.+.+-. | .|- ..+.+...+-++.+.+ .++++
T Consensus 101 dav~~~p---P-~y~----~~s~~~i~~~f~~v~~a~~~pv 133 (296)
T TIGR03249 101 DGYLLLP---P-YLI----NGEQEGLYAHVEAVCESTDLGV 133 (296)
T ss_pred CEEEECC---C-CCC----CCCHHHHHHHHHHHHhccCCCE
Confidence 9886532 1 111 1245666666666655 34543
No 402
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=77.98 E-value=41 Score=28.31 Aligned_cols=160 Identities=13% Similarity=0.092 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH----hcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK----KIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~----~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++..+.++.+.+.|+..|.+--. ..+.+.+.++++.+. +.+..+.+|. ..+...+.|++.+.++
T Consensus 11 ~~~~~~~l~~~~~~gv~~v~lR~k-----~~~~~~~~~~a~~l~~~~~~~~~~liin~------~~~la~~~~~dGvHl~ 79 (180)
T PF02581_consen 11 GDDFLEQLEAALAAGVDLVQLREK-----DLSDEELLELARRLAELCQKYGVPLIIND------RVDLALELGADGVHLG 79 (180)
T ss_dssp TCHHHHHHHHHHHTT-SEEEEE-S-----SS-HHHHHHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEEEB
T ss_pred cchHHHHHHHHHHCCCcEEEEcCC-----CCCccHHHHHHHHHHHHhhcceEEEEecC------CHHHHHhcCCCEEEec
Confidence 355667777778889999888543 223455555555554 3467776665 4677888999999987
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
.+.. ...+. +... ..+.++|. -++.++ +..+.+.+ ++.+.+.++.|.+--|-
T Consensus 80 ~~~~-----------~~~~~----r~~~------~~~~~ig~S~h~~~e----~~~a~~~g--~dYv~~gpvf~T~sk~~ 132 (180)
T PF02581_consen 80 QSDL-----------PPAEA----RKLL------GPDKIIGASCHSLEE----AREAEELG--ADYVFLGPVFPTSSKPG 132 (180)
T ss_dssp TTSS-----------SHHHH----HHHH------TTTSEEEEEESSHHH----HHHHHHCT--TSEEEEETSS--SSSSS
T ss_pred cccc-----------chHHh----hhhc------ccceEEEeecCcHHH----HHHhhhcC--CCEEEECCccCCCCCcc
Confidence 6431 11111 1111 11235666 677776 44455777 89999999887654332
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceee
Q psy8190 255 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF 307 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~ 307 (348)
. ++...+...++ +...+-.-+-+ +| +.++.-.....+||+++.
T Consensus 133 ~--~~~g~~~l~~~----~~~~~~pv~Al-GG---I~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 133 A--PPLGLDGLREI----ARASPIPVYAL-GG---ITPENIPELREAGADGVA 175 (180)
T ss_dssp ---TTCHHHHHHHH----HHHTSSCEEEE-SS-----TTTHHHHHHTT-SEEE
T ss_pred c--cccCHHHHHHH----HHhCCCCEEEE-cC---CCHHHHHHHHHcCCCEEE
Confidence 2 33333333222 22233211222 22 122333446789999873
No 403
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=77.97 E-value=6.4 Score=34.76 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHH
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQA 161 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l 161 (348)
+.+.++.+++.|... .++.- ..+..+.+++.++++.+.+.+.. +++ +.|..+++.+
T Consensus 110 ~~~~v~~ak~~g~~v-~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v 168 (237)
T PF00682_consen 110 IEEAVKYAKELGYEV-AFGCE--DASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDV 168 (237)
T ss_dssp HHHHHHHHHHTTSEE-EEEET--TTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHH
T ss_pred HHHHHHHHHhcCCce-EeCcc--ccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHH
Confidence 333344455556543 33322 22345667777777777765443 222 4666666443
No 404
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=77.92 E-value=64 Score=30.52 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-C---cEEEEecC-CCCHHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-G---LETCLTLG-MLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~---~~i~~~~g-~l~~e~l~~Lk~aG~~~i 172 (348)
.+++.+++.++.+.+.|+++|+|.+.. -...+..+.++++.+++. + +.++++.. -+--...-.-.++|++.+
T Consensus 194 ~~~~~l~~~~~~~~~~Gad~I~l~DT~---G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~v 270 (347)
T PLN02746 194 VPPSKVAYVAKELYDMGCYEISLGDTI---GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTV 270 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCc---CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 468888888888888999999886541 123556788888888763 2 33444322 122222233356789888
Q ss_pred eccCCC
Q psy8190 173 NHNLDT 178 (348)
Q Consensus 173 ~~g~et 178 (348)
...+..
T Consensus 271 d~sv~G 276 (347)
T PLN02746 271 DSSVAG 276 (347)
T ss_pred EEeccc
Confidence 765543
No 405
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=77.60 E-value=15 Score=32.75 Aligned_cols=178 Identities=18% Similarity=0.127 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
+|.+. ++...+.|.+.+++..-... . ....-.++++.+.+ ..+++.+-.|..+.+.++.+.++|++++.+|-.
T Consensus 32 ~p~~~---a~~~~~~g~~~lhivDLd~a-~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~ 105 (243)
T TIGR01919 32 SLESA---AKWWEQGGAEWIHLVDLDAA-F--GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTA 105 (243)
T ss_pred CHHHH---HHHHHhCCCeEEEEEECCCC-C--CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence 56443 34556778888888765221 1 11223446666654 467888889999999999999999999998766
Q ss_pred C--CHHHHhccCCCCCHHHHHHHHHHHHHcC--CeeeEeE-------eeec-C--CCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 178 T--SPKLYGDIISTRDYENRLNTLKNVRNVG--INICCGG-------IIGL-S--ESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 178 t--~~e~l~~i~~~~~~~~~~~~i~~~~~~G--~~i~~~~-------i~Gl-g--et~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+ ++++++.+. +..| +-++.+. .+.. | ++.-+..+.++.+.+++ ...+-+
T Consensus 106 a~~~p~~~~~~~---------------~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g--~~~ii~ 168 (243)
T TIGR01919 106 ALENPWWAAAVI---------------RYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGG--CSRVVV 168 (243)
T ss_pred hhCCHHHHHHHH---------------HHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCC--CCEEEE
Confidence 5 255554321 1112 2223332 2222 2 34455667777777776 555544
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHH-H-HhCcceeeeCC
Q psy8190 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFC-F-LAGANSIFYGD 310 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~-l-~~GAn~~~~~~ 310 (348)
.. +-..||- ..++.+ ++...+.. ++..+-+++|--++ .+..... + ..|++..+.|.
T Consensus 169 td-I~~dGt~----~G~d~~----l~~~l~~~-~~~pviasGGv~s~-eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 169 TD-SKKDGLS----GGPNEL----LLEVVAAR-TDAIVAASGGSSLL-DDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred Ee-cCCcccC----CCcCHH----HHHHHHhh-CCCCEEEECCcCCH-HHHHHHHhhccCCeeEEEEhH
Confidence 33 2245553 223333 22222322 34445566654333 2333321 3 46899887664
No 406
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=77.56 E-value=1.2e+02 Score=33.66 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-Cc-EEEEecCCCCHHHHHHHHHh--CCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GL-ETCLTLGMLNENQAYRLKKV--GLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~-~i~~~~g~l~~e~l~~Lk~a--G~~~i~ 173 (348)
.+.+.+++.++...+.|..-+=++++. +.....+.+..++..+... .+ .+-++..+...+.++.--++ |..-|+
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~~--~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IIN 442 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVDY--GMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVN 442 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEE
Confidence 577899999999999999988887662 2223456677777777643 12 44457788888888876666 876665
Q ss_pred ccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe--eecCCCHHHHHHHHHHHHh-----cCCCCCeeecccc
Q psy8190 174 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLAN-----LNPYPESVPINNL 246 (348)
Q Consensus 174 ~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i--~Glget~e~~~~~l~~l~~-----l~~~~~~i~~~~l 246 (348)
. +.....-+...+.+..++++|..+...-+ -|.-.|.++..+.++.+.+ .+-.++.|.|-++
T Consensus 443 ---s--------Is~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~DP~ 511 (1178)
T TIGR02082 443 ---S--------ISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFPPEDIIFDPN 511 (1178)
T ss_pred ---e--------CCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 1 11100012233567788889987665545 3565677766665544333 3311233333333
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCcee-----cc---c----cccccchhhHHHHHHhCcceeee
Q psy8190 247 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIR-----MS---A----GRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 247 ~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~-----~s---~----g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
+-.-+|--. .......+.++.+...+..+|+..+- .| + .|+.++.-+-+.++.+|-|.-+.
T Consensus 512 i~~v~~g~~-e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a~~~Gld~aIv 584 (1178)
T TIGR02082 512 ILTIATGIE-EHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHAIRAGMDMGIV 584 (1178)
T ss_pred ccccccCch-HHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHHHHcCCchhhc
Confidence 311111100 00012334555555555567775432 22 2 13444445667788888777543
No 407
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=77.54 E-value=30 Score=30.69 Aligned_cols=74 Identities=19% Similarity=0.096 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCc-EEEEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 98 LSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL-ETCLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~-~i~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
++.+++...+..+.+ .|..-+++..|.......+. ++++.+++ .+. ++.+-.|..+.+.++.+..+|+|++-+
T Consensus 137 ~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~----e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVV 212 (232)
T PRK04169 137 LDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPP----EMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVV 212 (232)
T ss_pred CChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCH----HHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 567888877766654 58888888765332222333 34444444 345 777888999999999999999999987
Q ss_pred c
Q psy8190 175 N 175 (348)
Q Consensus 175 g 175 (348)
|
T Consensus 213 G 213 (232)
T PRK04169 213 G 213 (232)
T ss_pred C
Confidence 5
No 408
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=77.37 E-value=17 Score=32.19 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
++.++.++.+.+.|+..+++... . +.. +. --.+.++.+++. ++++..|.|..+.+.+..+.++|++.|.++
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~-~-~g~-~~-a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAM-Y-PGK-PY-ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeC-C-CCC-ch-hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 35566777778889888877543 1 111 10 123555666653 378888889999988888888999988765
No 409
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.34 E-value=24 Score=34.74 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcE--EEEe--cCCCCHHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLE--TCLT--LGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~--i~~~--~g~l~~e~l~~Lk~aG~~~i 172 (348)
.+++.+++.++.+.+.|+..|+|.+.. ....+..+.++++.+++. +++ +|++ .|.-..-.+ .-.++|++.+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt~---G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~l-aAieaGad~v 225 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDMA---GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYL-AAVEAGADMF 225 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcc---CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHH-HHHHhCCCEE
Confidence 357888888888889999999996641 123557888888888863 443 3433 333333333 3347899998
Q ss_pred eccCC
Q psy8190 173 NHNLD 177 (348)
Q Consensus 173 ~~g~e 177 (348)
...+.
T Consensus 226 D~sv~ 230 (467)
T PRK14041 226 DTAIS 230 (467)
T ss_pred Eeecc
Confidence 86654
No 410
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=77.18 E-value=19 Score=34.01 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEEeccCCCCC----------cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHH
Q psy8190 99 SIESVITAAQKAKSDG-ATRFCMGAAWRELK----------DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK 166 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G-~~~i~l~gg~~~~~----------~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~ 166 (348)
++++.+..++.+.+.| +..+.+++|..... ........++++.+++ .++++.++.+..+.+.++.+.+
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~ 305 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALA 305 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHH
Confidence 4567777777777777 78788765522110 1112234566667766 3667777777778777777666
Q ss_pred hC-CCeeeccCCC--CHHHHhccC
Q psy8190 167 VG-LDYYNHNLDT--SPKLYGDII 187 (348)
Q Consensus 167 aG-~~~i~~g~et--~~e~l~~i~ 187 (348)
.| +|.|.+|=.. +|++.+++.
T Consensus 306 ~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 306 AGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred cCCCCeeeecHHhHhCccHHHHHH
Confidence 54 8888876443 466555543
No 411
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=77.15 E-value=50 Score=30.83 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=51.6
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC---------------CCHHHHHHHH-HhCCC
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM---------------LNENQAYRLK-KVGLD 170 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~---------------l~~e~l~~Lk-~aG~~ 170 (348)
+..+.+.|+++|-+-|+ .-|...+.+...++++..+..|+.+....|. .+++..+.+. +-|+|
T Consensus 101 i~~ai~~GftSVMiD~S-~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD 179 (321)
T PRK07084 101 CKDCIDSGFSSVMIDGS-HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVD 179 (321)
T ss_pred HHHHHHcCCCEEEeeCC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCC
Confidence 44566789999988876 2333445566677777777777777654332 2355655555 46999
Q ss_pred eeeccCCCCHHHHh
Q psy8190 171 YYNHNLDTSPKLYG 184 (348)
Q Consensus 171 ~i~~g~et~~e~l~ 184 (348)
.+-+++.|.--.|+
T Consensus 180 ~LAvaiGt~HG~Y~ 193 (321)
T PRK07084 180 SLAISIGTSHGAYK 193 (321)
T ss_pred EEeecccccccccc
Confidence 99999988655555
No 412
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.02 E-value=21 Score=33.49 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcc----------cHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHh
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDR----------DLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV 167 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~----------~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~a 167 (348)
++++.++.++.+.+.|+..|.+.+|...+... ...+..++.+.+++ .++++.++.+..+.+.++.+.+.
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~ 313 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALAS 313 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHc
Confidence 45555666666666666666655542111000 01123455555555 35566655555566666555555
Q ss_pred C-CCeeecc
Q psy8190 168 G-LDYYNHN 175 (348)
Q Consensus 168 G-~~~i~~g 175 (348)
| +|-|.++
T Consensus 314 g~aD~V~lg 322 (338)
T cd04733 314 GAVDGIGLA 322 (338)
T ss_pred CCCCeeeeC
Confidence 4 5666654
No 413
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=76.98 E-value=16 Score=32.24 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=37.5
Q ss_pred ecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCee
Q psy8190 152 TLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 209 (348)
Q Consensus 152 ~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i 209 (348)
+.+..-.|.+..-|++|+|-|.++++-+++-+.++ .-+-+++...++.+.+.|+.+
T Consensus 15 p~~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRL--DWs~~er~~l~~ai~etgv~i 70 (287)
T COG3623 15 PNGFSWLERLALAKELGFDFVEMSVDESDERLARL--DWSKEERLALVNAIQETGVRI 70 (287)
T ss_pred cCCCCHHHHHHHHHHcCCCeEEEeccchHHHHHhc--CCCHHHHHHHHHHHHHhCCCc
Confidence 34455567888888888888888887665555544 345566666677777766643
No 414
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=76.97 E-value=46 Score=28.40 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEE--EEecCCCCHHHHHHHHHhCCCeeec
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLET--CLTLGMLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i--~~~~g~l~~e~l~~Lk~aG~~~i~~ 174 (348)
+++..+.+.++.+.+.|++.+.|.-.+. +.......-.++++.+++. +..+ .+-.... .+.++.+.++|++.+.+
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~~g~dgv~v 86 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDG-HFVPNLTFGPPVVKALRKHTDLPLDVHLMVENP-ERYIEAFAKAGADIITF 86 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccC-CCCCccccCHHHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEE
Confidence 5666777888888889999987743211 1000111113455555542 1222 2222111 35688889999999764
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 254 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l 254 (348)
..... +...+.++.+++.|+.+... ++ ..+.++..+.+ ... ++.+.+.++.| |+--
T Consensus 87 h~~~~-------------~~~~~~~~~~~~~~~~~g~~--~~-~~~~~~~~~~~---~~~---~d~i~~~~~~~--g~tg 142 (211)
T cd00429 87 HAEAT-------------DHLHRTIQLIKELGMKAGVA--LN-PGTPVEVLEPY---LDE---VDLVLVMSVNP--GFGG 142 (211)
T ss_pred Cccch-------------hhHHHHHHHHHHCCCeEEEE--ec-CCCCHHHHHHH---Hhh---CCEEEEEEECC--CCCC
Confidence 32211 23345577788888765443 22 22333322222 222 45666555443 3321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 255 YGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~R~~lp----~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
. ..+ ....+.+...|.+.+ +..+-+.+| +..+.-..++.+||+.++.|..+.
T Consensus 143 ~---~~~-~~~~~~i~~~~~~~~~~~~~~pi~v~GG---I~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 143 Q---KFI-PEVLEKIRKLRELIPENNLNLLIEVDGG---INLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred c---ccC-HHHHHHHHHHHHHHHhcCCCeEEEEECC---CCHHHHHHHHHcCCCEEEECHHHh
Confidence 1 111 233344444444443 222333333 223334457789999998886553
No 415
>PRK06801 hypothetical protein; Provisional
Probab=76.95 E-value=60 Score=29.76 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC------------------CHHHHHHHH
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML------------------NENQAYRLK 165 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l------------------~~e~l~~Lk 165 (348)
.+.++.+.+.|++.|-+-+. ..+.....+...++++..+..++.+....|.+ +++.+..+.
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S-~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~ 165 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGS-TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFV 165 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHH
Q ss_pred -HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHH
Q psy8190 166 -KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIF 229 (348)
Q Consensus 166 -~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~ 229 (348)
+.|+|.+-+++.|..-.|+. .+..+++...+.-+.. ++++ ++.|- |=+.+++.+.+.
T Consensus 166 ~~tgvD~LAvaiGt~Hg~y~~-~~~l~~e~l~~i~~~~---~~PL---VlHGGSgi~~e~~~~~i~ 224 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGKYKG-EPKLDFARLAAIHQQT---GLPL---VLHGGSGISDADFRRAIE 224 (286)
T ss_pred HHHCcCEEEeccCCCCCCCCC-CCCCCHHHHHHHHHhc---CCCE---EEECCCCCCHHHHHHHHH
No 416
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=76.86 E-value=8.5 Score=33.70 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHh-CCCeeeccCCC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV-GLDYYNHNLDT 178 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~a-G~~~i~~g~et 178 (348)
++..+.++.+.+.|+..+.+.+......... ..-.+.++.+++ .++++.++.|..+.+.+..+.+. |+|.+.+|=..
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSG-PADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCC-CCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHh
Confidence 3677777777788988887766521000000 112344555655 46788888888888888888887 89998887433
Q ss_pred --CHHHHhcc
Q psy8190 179 --SPKLYGDI 186 (348)
Q Consensus 179 --~~e~l~~i 186 (348)
+|..++++
T Consensus 217 l~~P~~~~~~ 226 (231)
T cd02801 217 LGNPWLFREI 226 (231)
T ss_pred HhCCHHHHhh
Confidence 46665554
No 417
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=76.79 E-value=19 Score=31.64 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEe--cCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLT--LGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~--~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
+++.+.++.+.+.|++.|.+.. + .+++.+++. ++++.++ ....+.+.++.|++.|++++.++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~----~---------g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN----P---------GLLELLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSP 68 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC----H---------HHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECc
Confidence 5677777888899999987742 1 223344443 4555554 457899999999999999999887
Q ss_pred CC
Q psy8190 177 DT 178 (348)
Q Consensus 177 et 178 (348)
|-
T Consensus 69 EL 70 (233)
T PF01136_consen 69 EL 70 (233)
T ss_pred cC
Confidence 65
No 418
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=76.78 E-value=9.7 Score=33.80 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCC--CCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHh-CCCeeec
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRE--LKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV-GLDYYNH 174 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~--~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~a-G~~~i~~ 174 (348)
+..+..+.++.+.+.|+..+.+++-... ....+ .++++.+++ .++++.++.|..+.+.+..+.+. |++.+.+
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~----~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYD----LELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCC----HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3445566667777889999877653211 11222 445555554 47889899999999999988887 8998876
Q ss_pred c
Q psy8190 175 N 175 (348)
Q Consensus 175 g 175 (348)
+
T Consensus 223 g 223 (243)
T cd04731 223 A 223 (243)
T ss_pred e
Confidence 4
No 419
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=76.75 E-value=15 Score=34.46 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCC---cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhC-CCeee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELK---DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYN 173 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~---~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG-~~~i~ 173 (348)
++++.++.++.+.+.|+..|.+++|+.+.. .....+..+.++.+++ .++++.+..+..+.+.++.+.+.| +|.|.
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 355555556666566666665544321110 0111223344455554 355555555555666666666665 56555
Q ss_pred cc
Q psy8190 174 HN 175 (348)
Q Consensus 174 ~g 175 (348)
++
T Consensus 319 ~g 320 (336)
T cd02932 319 LG 320 (336)
T ss_pred hh
Confidence 44
No 420
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.53 E-value=28 Score=31.55 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=72.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCCC-H---HHHHHHHHhC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGMLN-E---NQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l~-~---e~l~~Lk~aG 168 (348)
..+.+.+.+.++.+.+.|++.|++.|. ++.. ..+.+.-.++++.+.+. .+.+.+..+..+ . +..+..+++|
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAP-TLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccc-cCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcC
Confidence 478899999999999999999887664 3433 45667777777766652 466666666433 3 3455666779
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeee
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIG 216 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~G 216 (348)
++.+.+..-. |- ..+.++.++.++.+.+ .++++...-+-+
T Consensus 93 ad~v~v~pP~----y~----~~~~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 93 ADGVLVVPPY----YN----KPSQEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred CCEEEECCCc----CC----CCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 9998864321 11 1356777777777666 456665444433
No 421
>PRK07329 hypothetical protein; Provisional
Probab=76.41 E-value=23 Score=31.60 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCcEEEEecCCC--------CHHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHH
Q psy8190 133 DNIENMICEVKKIGLETCLTLGML--------NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVR 203 (348)
Q Consensus 133 ~~~~~l~~~i~~~~~~i~~~~g~l--------~~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~ 203 (348)
+.+.++++.+++.++.+.+|.+.+ ..+.++..++.|+..+.+|-++ .++-... ..-++++.++
T Consensus 165 ~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~--------~~~~a~~~l~ 236 (246)
T PRK07329 165 PQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRY--------NFDDAQKLLK 236 (246)
T ss_pred HHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHH--------HHHHHHHHHH
Confidence 455677888888888888776433 1456888999998778888877 5544321 3456788888
Q ss_pred HcCCeee
Q psy8190 204 NVGINIC 210 (348)
Q Consensus 204 ~~G~~i~ 210 (348)
+.|++..
T Consensus 237 ~~g~~~~ 243 (246)
T PRK07329 237 EHGIKEI 243 (246)
T ss_pred HcCCceE
Confidence 9999643
No 422
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=76.33 E-value=67 Score=29.95 Aligned_cols=189 Identities=15% Similarity=0.087 Sum_probs=112.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.+.++.++.+..+.+.|++.+-++... ... ...+..+.+..... .-.+..+.-....++...++|++.+.+..
T Consensus 17 ~~~~~ki~i~~~l~~~Gv~~iE~g~p~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 90 (344)
T TIGR02146 17 FSTEQKIEIAKALDEFGIDYIEVTHPA--ASK----QSRIDIEIIASLGLKANIVTHIRCRLDDAKVAVELGVDGIDIFF 90 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC--CCH----HHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHCCcCEEEEEE
Confidence 678999999999999999998775431 111 11222333332211 11222334446777888899999877654
Q ss_pred CCC-HHHHhccCC--CCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCC
Q psy8190 177 DTS-PKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 253 (348)
Q Consensus 177 et~-~e~l~~i~~--~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~ 253 (348)
-++ -........ ....+....+++.+++.|+.+...++-..-...+++.+..+.+..++ ++.+.+.- |.
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g--~~~i~~~d------t~ 162 (344)
T TIGR02146 91 GTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFG--VDRVGIAD------TV 162 (344)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCC--CCEEEEcC------CC
Confidence 333 222222322 12345777889999999998887766655566788888888888887 77643221 22
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc---cchhhHHHHHHhCccee
Q psy8190 254 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE---MGETTQAFCFLAGANSI 306 (348)
Q Consensus 254 l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~---l~~~~~~~~l~~GAn~~ 306 (348)
. ..++.+....+...+...|...+.+.. |+ +.-.....|+++||.-+
T Consensus 163 g----~~~p~~v~~~v~~~~d~~~~~~~~~H~--Hn~~g~avant~~al~~ga~~~ 212 (344)
T TIGR02146 163 G----KAAPRQVYELIRTVVRVVPGVDIELHA--HNDTGCAVANAYNAIEGGATIV 212 (344)
T ss_pred C----cCCHHHHHHHHHHHHHhCCCCeEEEEe--cCCCCHHHHHHHHHHHcCCCEE
Confidence 1 124445556666666666653333221 22 11334566889998876
No 423
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.23 E-value=19 Score=33.03 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=45.0
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEE-ecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++.++.+.|+..|.+- + .+++.+.+.++.++....++.+ -.|.++.+.+..+.+.|+|.++.|-=+
T Consensus 211 ea~eal~~gaDiI~LD----n---m~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 211 QLDEVLAEGAELVLLD----N---FPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred HHHHHHHcCCCEEEeC----C---CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhh
Confidence 3444456677766662 1 2457788888877654333332 356799999999999999999987544
No 424
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=75.93 E-value=53 Score=28.64 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=87.4
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHH----hcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK----KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT- 178 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~----~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et- 178 (348)
.+.++.+.+.|++.+-|-.-+ . ..+.+.+..++++ +.+..+-+|- .++.-.+.|.|.|++|.+.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~--~---~~~~~~~~a~~~~~lc~~~~v~liINd------~~dlA~~~~AdGVHlGq~D~ 92 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKD--L---SDEEYLALAEKLRALCQKYGVPLIIND------RVDLALAVGADGVHLGQDDM 92 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCC--C---ChHHHHHHHHHHHHHHHHhCCeEEecC------cHHHHHhCCCCEEEcCCccc
Confidence 566677788899888775431 1 1122244444443 4577775543 3666668999999998874
Q ss_pred CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCC
Q psy8190 179 SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 257 (348)
Q Consensus 179 ~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~ 257 (348)
.....+++ ...++++|+ ..+.|+. ..+.+++ ++.+.+.++.|.+ |+-. .
T Consensus 93 ~~~~ar~~----------------------~~~~~iIG~S~h~~eea----~~A~~~g--~DYv~~GpifpT~-tK~~-~ 142 (211)
T COG0352 93 PLAEAREL----------------------LGPGLIIGLSTHDLEEA----LEAEELG--ADYVGLGPIFPTS-TKPD-A 142 (211)
T ss_pred chHHHHHh----------------------cCCCCEEEeecCCHHHH----HHHHhcC--CCEEEECCcCCCC-CCCC-C
Confidence 22221111 123567888 6666654 4455677 8999999999875 3322 1
Q ss_pred CCCCHHHHHHHHHHHHHH--CCCCceeccccccccchhhHHHHHHhCcceee
Q psy8190 258 SILDPLEFIRTIAVARIT--MPTSRIRMSAGRKEMGETTQAFCFLAGANSIF 307 (348)
Q Consensus 258 ~~~~~~~~~~~~a~~R~~--lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~ 307 (348)
++...+.++ .++.. +|- +-+.+ +..+.....+.+||+.+-
T Consensus 143 -~~~G~~~l~---~~~~~~~iP~--vAIGG----i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 143 -PPLGLEGLR---EIRELVNIPV--VAIGG----INLENVPEVLEAGADGVA 184 (211)
T ss_pred -CccCHHHHH---HHHHhCCCCE--EEEcC----CCHHHHHHHHHhCCCeEE
Confidence 333333443 22222 342 22221 223445567899999983
No 425
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=75.86 E-value=59 Score=29.72 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=61.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC-------CcccHHHHHHHHHHHHhc-C--cEEE--EecC----CCCHH-H
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL-------KDRDLDNIENMICEVKKI-G--LETC--LTLG----MLNEN-Q 160 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~-------~~~~~~~~~~l~~~i~~~-~--~~i~--~~~g----~l~~e-~ 160 (348)
++..++.+.+..+...|++.|+..+|+... .....+.-.++++.+++. + +.+. ++|. .-+.+ .
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d 150 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELD 150 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHH
Confidence 345678888888888999998776663210 112334567777777763 2 3333 2332 12332 3
Q ss_pred HHHHH---HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 161 AYRLK---KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 161 l~~Lk---~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
++.|+ ++|++.+- | . .-.+.+...+.++.+++.|+.+ -++.|+
T Consensus 151 ~~~L~~Ki~aGA~f~i----T------Q--~~Fd~~~~~~f~~~~~~~gi~~--PIi~GI 196 (281)
T TIGR00677 151 LKYLKEKVDAGADFII----T------Q--LFYDVDNFLKFVNDCRAIGIDC--PIVPGI 196 (281)
T ss_pred HHHHHHHHHcCCCEee----c------c--ceecHHHHHHHHHHHHHcCCCC--CEEeec
Confidence 44444 58988543 1 0 0235567777788888888753 346666
No 426
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=75.83 E-value=46 Score=27.86 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCC-----H---HHHHHHHHhCCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN-----E---NQAYRLKKVGLD 170 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~-----~---e~l~~Lk~aG~~ 170 (348)
+.+.+.+.++.+.+.|+..+.+.| +.+..+.+......+.+.+..|..+ . +..+..+++|++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad 80 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGAD 80 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 678888888888889999887754 1222222333321355555544332 3 567777888999
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc---CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccc
Q psy8190 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV---GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV 247 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~---G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~ 247 (348)
.+.+.. -.+-. +..+.+...+.++.+.+. ++++....+.+..-+.+.+.+..+.+.+.+ .+.+....-.
T Consensus 81 ~i~v~~----~~~~~--~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g--~~~iK~~~~~ 152 (201)
T cd00945 81 EIDVVI----NIGSL--KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG--ADFIKTSTGF 152 (201)
T ss_pred EEEEec----cHHHH--hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC--CCEEEeCCCC
Confidence 887533 11211 111356666767666664 788776655443335666666666666666 6666543311
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeee
Q psy8190 248 QIKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFY 308 (348)
Q Consensus 248 P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~ 308 (348)
++ ...+.....++.. ..+ +..+...+|... ......++..||+.++.
T Consensus 153 ----~~----~~~~~~~~~~i~~----~~~~~~~v~~~gg~~~--~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 153 ----GG----GGATVEDVKLMKE----AVGGRVGVKAAGGIKT--LEDALAAIEAGADGIGT 200 (201)
T ss_pred ----CC----CCCCHHHHHHHHH----hcccCCcEEEECCCCC--HHHHHHHHHhccceeec
Confidence 00 1223333333322 223 333443333221 23345567789998754
No 427
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=75.75 E-value=50 Score=30.78 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHHHhc---CcEEEEec-C-CC----CHHHHHHHHHh-CCCeeeccCCCCHHHHhccCCCCCHHHHHHHH
Q psy8190 130 RDLDNIENMICEVKKI---GLETCLTL-G-ML----NENQAYRLKKV-GLDYYNHNLDTSPKLYGDIISTRDYENRLNTL 199 (348)
Q Consensus 130 ~~~~~~~~l~~~i~~~---~~~i~~~~-g-~l----~~e~l~~Lk~a-G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i 199 (348)
.+++++.+.++.+.+. +++.++.. | .+ -.+.++.|++. |+..++ +||.--++. .+.+
T Consensus 141 Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVS--mQTng~~L~-----------~~lv 207 (414)
T COG2100 141 VDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVS--MQTNGVLLS-----------KKLV 207 (414)
T ss_pred ecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCceEEE--EeeCceecc-----------HHHH
Confidence 3678888888877653 67777642 2 22 23666677766 566555 476322222 1345
Q ss_pred HHHHHcCC-eeeEe----------Eeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHH
Q psy8190 200 KNVRNVGI-NICCG----------GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 267 (348)
Q Consensus 200 ~~~~~~G~-~i~~~----------~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~ 267 (348)
+.+.++|+ .++.. ++.|. ..+.+.+.+.++++.+-+ .+.+....++ +..+.+|+.+
T Consensus 208 ~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~--idvlIaPv~l----------PG~ND~E~~~ 275 (414)
T COG2100 208 DELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAG--IDVLIAPVWL----------PGVNDDEMPK 275 (414)
T ss_pred HHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCC--CCEEEeeeec----------CCcChHHHHH
Confidence 66677887 34432 37788 788899999999998866 5554333333 3467789999
Q ss_pred HHHHHHHH
Q psy8190 268 TIAVARIT 275 (348)
Q Consensus 268 ~~a~~R~~ 275 (348)
++..||..
T Consensus 276 iIe~A~~i 283 (414)
T COG2100 276 IIEWAREI 283 (414)
T ss_pred HHHHHHHh
Confidence 99999875
No 428
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=75.73 E-value=19 Score=32.97 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++++++.+.|++.|.+. + .+++.+.++++.+++. .+.+. -.|.++.+.+..+.+.|+|.++.|.=+
T Consensus 200 eqa~ea~~agaDiI~LD----n---~~~e~l~~av~~~~~~~~~~~le-aSGGI~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 200 KEAIAALRAQPDVLQLD----K---FSPQQATEIAQIAPSLAPHCTLS-LAGGINLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred HHHHHHHHcCCCEEEEC----C---CCHHHHHHHHHHhhccCCCeEEE-EECCCCHHHHHHHHhcCCCEEEECccc
Confidence 34445566788877662 1 2457788888777643 33333 356799999999999999999987433
No 429
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=75.46 E-value=63 Score=29.22 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-------ccHHHHHHHHHHHHhc---CcEEE------EecCCCC-HHH
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKD-------RDLDNIENMICEVKKI---GLETC------LTLGMLN-ENQ 160 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-------~~~~~~~~l~~~i~~~---~~~i~------~~~g~l~-~e~ 160 (348)
++..++...+..+.+.|++.|++.+|+..... .....-.++++.++.. ++.+. .++..-+ +..
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~ 149 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEED 149 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHH
Confidence 45688888888888999999988776322111 1223455666666542 22222 1333332 233
Q ss_pred HHHHH---HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec
Q psy8190 161 AYRLK---KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 217 (348)
Q Consensus 161 l~~Lk---~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl 217 (348)
++.|+ ++|++.+-- | .-.+.+...+.++.+++.|+. .-++.|+
T Consensus 150 ~~~L~~Ki~aGA~f~iT--Q----------~~fd~~~~~~~~~~~~~~gi~--vPIi~GI 195 (274)
T cd00537 150 IKRLKRKVDAGADFIIT--Q----------LFFDNDAFLRFVDRCRAAGIT--VPIIPGI 195 (274)
T ss_pred HHHHHHHHHCCCCEEee--c----------ccccHHHHHHHHHHHHHcCCC--CCEEeec
Confidence 44443 568876541 1 023556777778888888863 2445555
No 430
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=75.40 E-value=68 Score=30.11 Aligned_cols=120 Identities=8% Similarity=0.031 Sum_probs=65.9
Q ss_pred HHHHHhCC-----------CCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-------------------C
Q psy8190 107 AQKAKSDG-----------ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-------------------L 156 (348)
Q Consensus 107 ~~~~~~~G-----------~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-------------------l 156 (348)
++.+.+.| +.++.+-++ .-+...+.+...++++..+..++.+....|. .
T Consensus 103 i~~ai~~G~~~~~~~~~~~FsSVMiDgS-~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT 181 (340)
T cd00453 103 IDGLLDAGEKHFAATGKPLFSSHMIDLS-EESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYT 181 (340)
T ss_pred HHHHHHcCCccccccCCCCceeEEecCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCC
Confidence 44556678 888877665 2232334455555666666666665543221 1
Q ss_pred CHHHHHHH-HHhC----CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHH-HHcCCe--eeEeEeeec-CCCHHHHHHH
Q psy8190 157 NENQAYRL-KKVG----LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNV-RNVGIN--ICCGGIIGL-SESRDQRAEL 227 (348)
Q Consensus 157 ~~e~l~~L-k~aG----~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~-~~~G~~--i~~~~i~Gl-get~e~~~~~ 227 (348)
++|.+..+ ++-| +|.+-+++.|.--+|+.-.+..+++...+.-+.. .+.|+. -..-++-|- |-+.+++.+.
T Consensus 182 ~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~a 261 (340)
T cd00453 182 QPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDS 261 (340)
T ss_pred CHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHH
Confidence 24555444 4679 9998888888655565323445666555544444 335552 122345566 6666554433
No 431
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=75.25 E-value=72 Score=29.80 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=86.5
Q ss_pred HHHHHHHhc--CcEEEEecCCC-----CHHHHH-HHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc-CC
Q psy8190 137 NMICEVKKI--GLETCLTLGML-----NENQAY-RLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-GI 207 (348)
Q Consensus 137 ~l~~~i~~~--~~~i~~~~g~l-----~~e~l~-~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~-G~ 207 (348)
+-++.+++. +..+.+|.+.. +.+.+. ....++.+.+.+++...++... -....+++.+++.++.+++. .+
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~-~~~~~df~~~~~~i~~l~~~~~v 179 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQ-PEGDRDFRGWLERIEELVKALSV 179 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcC-CCCCcCHHHHHHHHHHHHHhcCC
Confidence 666677663 35666665532 445444 4444677887776633222111 11234688888999998885 77
Q ss_pred eeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCC-------------------CCCCCCCHHHHHHH
Q psy8190 208 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-------------------YGSSILDPLEFIRT 268 (348)
Q Consensus 208 ~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l-------------------~~~~~~~~~~~~~~ 268 (348)
++.+- +.|.|.+. +.+..+.+.+ ++.|.++-. .||.+ .+...++ ...
T Consensus 180 PVivK-~~g~g~s~----~~a~~l~~~G--vd~I~vsG~---GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t----~~~ 245 (326)
T cd02811 180 PVIVK-EVGFGISR----ETAKRLADAG--VKAIDVAGA---GGTSWARVENYRAKDSDQRLAEYFADWGIPT----AAS 245 (326)
T ss_pred CEEEE-ecCCCCCH----HHHHHHHHcC--CCEEEECCC---CCCcccccccccccccccccccccccccccH----HHH
Confidence 76554 34555553 4556677788 888877653 33221 1111121 222
Q ss_pred HHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCC
Q psy8190 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 310 (348)
Q Consensus 269 ~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~ 310 (348)
+..++...++..|-+++|-.+ ......++..||+.+..+.
T Consensus 246 l~~~~~~~~~ipIiasGGIr~--~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 246 LLEVRSALPDLPLIASGGIRN--GLDIAKALALGADLVGMAG 285 (326)
T ss_pred HHHHHHHcCCCcEEEECCCCC--HHHHHHHHHhCCCEEEEcH
Confidence 333344444444555665333 2334457788999997665
No 432
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=75.22 E-value=70 Score=31.79 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHHHHhC-----CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEEecCCCCHH------------
Q psy8190 98 LSIESVITAAQKAKSD-----GATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCLTLGMLNEN------------ 159 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~-----G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~~~g~l~~e------------ 159 (348)
++++++.+.++.+.+. ++.++.+-.| .|...+. +.++.+++.|+ .+.+++-..+++
T Consensus 232 L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~g--rPd~it~----e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e 305 (488)
T PRK08207 232 LTAEELERLLEEIYENFPDVKNVKEFTVEAG--RPDTITE----EKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVE 305 (488)
T ss_pred CCHHHHHHHHHHHHHhccccCCceEEEEEcC--CCCCCCH----HHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHH
Confidence 4566666666655432 3456766554 2333332 44556666554 344444444443
Q ss_pred ----HHHHHHHhCCCeeeccCCCCHHHHhccC-CCCCHHHHHHHHHHHHHcCCe-eeEeE
Q psy8190 160 ----QAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRNVGIN-ICCGG 213 (348)
Q Consensus 160 ----~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~~~~~~~~~~~i~~~~~~G~~-i~~~~ 213 (348)
.++.++++|++.+++.+ .++ |+.+.+++.++++.+.+.+.. ++.+.
T Consensus 306 ~v~~ai~~ar~~Gf~~In~DL--------I~GLPgEt~ed~~~tl~~l~~L~pd~isv~~ 357 (488)
T PRK08207 306 DIIEKFHLAREMGFDNINMDL--------IIGLPGEGLEEVKHTLEEIEKLNPESLTVHT 357 (488)
T ss_pred HHHHHHHHHHhCCCCeEEEEE--------EeCCCCCCHHHHHHHHHHHHhcCcCEEEEEe
Confidence 45566677876665433 222 577999999999999999874 55443
No 433
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=75.17 E-value=12 Score=34.17 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHhCCCeeeccCC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT-LGMLNENQAYRLKKVGLDYYNHNLD 177 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~-~g~l~~e~l~~Lk~aG~~~i~~g~e 177 (348)
++.++.++...+.|.+-|+.-+ ..+.+.+..+.+.++ ..+.+.+. .|.-..-..+.|.++|+.+|+.++-
T Consensus 166 d~AI~Ra~AY~eAGAD~if~~a------l~~~e~i~~f~~av~-~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~ 236 (289)
T COG2513 166 DDAIERAQAYVEAGADAIFPEA------LTDLEEIRAFAEAVP-VPLPANITEFGKTPLLTVAELAELGVKRVSYGLT 236 (289)
T ss_pred HHHHHHHHHHHHcCCcEEcccc------CCCHHHHHHHHHhcC-CCeeeEeeccCCCCCcCHHHHHhcCceEEEECcH
Confidence 4444444444555555543322 224566666666665 11222221 1211122357888889999888763
No 434
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=75.07 E-value=20 Score=31.94 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 100 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 100 ~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
.+|.++.++...+.|.+-+++-|. .+.+.+.++.+.+. .++.+..+ -..-.++.|.+.|+.+++++.
T Consensus 154 ~deaI~R~~aY~eAGAD~ifi~~~------~~~~~i~~~~~~~~---~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~ 220 (238)
T PF13714_consen 154 LDEAIERAKAYAEAGADMIFIPGL------QSEEEIERIVKAVD---GPLNVNPG-PGTLSAEELAELGVKRVSYGN 220 (238)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETTS------SSHHHHHHHHHHHS---SEEEEETT-SSSS-HHHHHHTTESEEEETS
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC------CCHHHHHHHHHhcC---CCEEEEcC-CCCCCHHHHHHCCCcEEEEcH
Confidence 344555555555555555544332 12234444444442 33333332 111335555666666666544
No 435
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=75.07 E-value=26 Score=32.32 Aligned_cols=105 Identities=10% Similarity=0.013 Sum_probs=66.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCCCHHH---HHHHHHhCC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGMLNENQ---AYRLKKVGL 169 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l~~e~---l~~Lk~aG~ 169 (348)
..+.+.+.+.++.+.+.|++.+++.|. ++.+ ..+.+.-.++++.+.+. .+++.+..+.-+.+. .+..+++|+
T Consensus 24 ~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~-~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYGAAALFAAGGTGEFF-SLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGA 102 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCC
Confidence 378899999999999999999887664 4433 45667777777766542 456665656544444 455566799
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeee
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINIC 210 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~ 210 (348)
+.+.+.. | .|- ..+.+...+-++.+.+ .++++.
T Consensus 103 dav~~~p---P-~y~----~~~~~~i~~~f~~va~~~~lpi~ 136 (303)
T PRK03620 103 DGILLLP---P-YLT----EAPQEGLAAHVEAVCKSTDLGVI 136 (303)
T ss_pred CEEEECC---C-CCC----CCCHHHHHHHHHHHHHhCCCCEE
Confidence 9887532 1 111 1245666666666555 355543
No 436
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.99 E-value=63 Score=29.04 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc----------------ccHHHHHHHHHHHHhc--CcEEE-Ee--cCCCC
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAWRELKD----------------RDLDNIENMICEVKKI--GLETC-LT--LGMLN 157 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~----------------~~~~~~~~l~~~i~~~--~~~i~-~~--~g~l~ 157 (348)
+.+.-.+.++.+.+.|++-+-|+--..+|.. .+.+.+.++++.+++. ++++- .. .-...
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 5666777777888889998877543222211 1235778888888853 33322 11 11112
Q ss_pred ---HHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhc
Q psy8190 158 ---ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 158 ---~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l 234 (348)
++.++.++++|++.+.+--+ ..++..+.++.+++.|+... +++.. .|..+++..+ .+.
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl-------------p~ee~~~~~~~~~~~gl~~i--~lv~P-~T~~eri~~i---~~~ 162 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL-------------PLEESGDLVEAAKKHGVKPI--FLVAP-NADDERLKQI---AEK 162 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC-------------ChHHHHHHHHHHHHCCCcEE--EEECC-CCCHHHHHHH---HHh
Confidence 46799999999999875422 44677788899999998653 33333 3333333222 222
Q ss_pred CCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 235 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 235 ~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
. ...+-+......-|.. ... ..+....+...|...+. .|-+..|-.+ ++....+..+|||.++.|..+
T Consensus 163 ~--~gfiy~vs~~G~TG~~----~~~-~~~~~~~i~~lr~~~~~-pi~vgfGI~~--~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 163 S--QGFVYLVSRAGVTGAR----NRA-ASALNELVKRLKAYSAK-PVLVGFGISK--PEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred C--CCCEEEEECCCCCCCc----ccC-ChhHHHHHHHHHhhcCC-CEEEeCCCCC--HHHHHHHHHcCCCEEEECHHH
Confidence 2 2233332222222211 111 12356666666665433 3433332211 444556788999999888643
No 437
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.99 E-value=14 Score=32.48 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.++.+.+.|+..+.+.+-.. .....+ .++++.+++ .++++.++.|..+.+.++.+.+.|++.+-+|
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g~~----~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSGPN----FELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCCCC----HHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 3444556678999987764211 111123 345555554 3688888999999999999999999998875
No 438
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=74.99 E-value=61 Score=28.86 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCC-CHHHHHHHHHHHHH-cCCeeeEeEeeecCCCHHHHHHHHHH
Q psy8190 153 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTR-DYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQ 230 (348)
Q Consensus 153 ~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~-~~~~~~~~i~~~~~-~G~~i~~~~i~Glget~e~~~~~l~~ 230 (348)
++..+.-..+.+.++|++.+.++=-...-.+-.-.... ++++.+..++.... ..+++..++=.|+| +.++..++++.
T Consensus 14 ~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g-~~~~~~~~v~~ 92 (243)
T cd00377 14 PGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYG-NALNVARTVRE 92 (243)
T ss_pred cCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCC-CHHHHHHHHHH
Q ss_pred HHhcCCCCCeeec-ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-Cceecccc-----c--cccc--hhhHHHHH
Q psy8190 231 LANLNPYPESVPI-NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAG-----R--KEMG--ETTQAFCF 299 (348)
Q Consensus 231 l~~l~~~~~~i~~-~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~-~~i~~s~g-----~--~~l~--~~~~~~~l 299 (348)
+.+.+ ...+.+ -...|....-+......+.++....+..++....+ ..+.+-.+ . ..+. -+......
T Consensus 93 ~~~~G--~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 93 LEEAG--AAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHcC--CEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Q ss_pred HhCcceeeeCCeeccCCCCCchHHHHHHHHcCCCch
Q psy8190 300 LAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTR 335 (348)
Q Consensus 300 ~~GAn~~~~~~~~~~~~g~~~~~~~~~i~~~G~~p~ 335 (348)
.+||+.++..... +.++..++.++.+..+.
T Consensus 171 ~AGAD~v~v~~~~------~~~~~~~~~~~~~~Pl~ 200 (243)
T cd00377 171 EAGADGIFVEGLK------DPEEIRAFAEAPDVPLN 200 (243)
T ss_pred HcCCCEEEeCCCC------CHHHHHHHHhcCCCCEE
No 439
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=74.78 E-value=85 Score=31.66 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-----------------------EEEec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-----------------------TCLTL 153 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-----------------------i~~~~ 153 (348)
..+.+.-++++..+.+.|..-|.+.- |.....+.+.++.+.+++.|.. +.+||
T Consensus 41 T~D~~atv~Qi~~L~~aGceiVRvtv----p~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINP 116 (606)
T PRK00694 41 TTDVDGTVRQICALQEWGCDIVRVTV----QGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRINP 116 (606)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcC----CCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEECC
Confidence 35677888888888899998887743 3345677788888877654322 12367
Q ss_pred CCCCH-----------------------H----HHHHHHHhCC-CeeeccCCC-CHHHHhccCCC--CCHHHHHHHHHHH
Q psy8190 154 GMLNE-----------------------N----QAYRLKKVGL-DYYNHNLDT-SPKLYGDIIST--RDYENRLNTLKNV 202 (348)
Q Consensus 154 g~l~~-----------------------e----~l~~Lk~aG~-~~i~~g~et-~~e~l~~i~~~--~~~~~~~~~i~~~ 202 (348)
|.+-. + .++..|+.|+ -||-.+-.| +++++++.+.. .-.+-.++.++.+
T Consensus 117 GNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~ 196 (606)
T PRK00694 117 GNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVC 196 (606)
T ss_pred cccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 64421 2 2344455564 233344455 57777766421 2355666777778
Q ss_pred HHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhc
Q psy8190 203 RNVGINICCGGIIGL-SESRDQRAELIFQLANL 234 (348)
Q Consensus 203 ~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l 234 (348)
.+.||. ++++-+ -.+....++..+.+.+-
T Consensus 197 e~~~f~---diviS~KsSnv~~mi~AyrlLa~~ 226 (606)
T PRK00694 197 EKLDYR---DVVFSMKSSNPKVMVAAYRQLAKD 226 (606)
T ss_pred HHCCCC---cEEEEEEcCCHHHHHHHHHHHHHH
Confidence 888872 445556 55566666666665543
No 440
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=74.75 E-value=35 Score=31.47 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhcC-cEEEEecCCC-CHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCC-
Q psy8190 131 DLDNIENMICEVKKIG-LETCLTLGML-NENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI- 207 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~~-~~i~~~~g~l-~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~- 207 (348)
+...+.+.++..++.+ +.++++.|.. +.+.+....+.+.+|+.+|+...+. -+.++.+++.|+
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~~~RIgHg~~~~~~--------------p~~~~~l~~~~i~ 216 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLLPDRIGHGIFLLKH--------------PELIYLVKLRNIP 216 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhccceeeceEecCCC--------------HHHHHHHHHcCCE
Confidence 4566677777777777 7777777743 3444455555557777777655210 233555666665
Q ss_pred -eee--EeEeeecCCCHHHHHHHHHHHHhcC
Q psy8190 208 -NIC--CGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 208 -~i~--~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
.+| +++..|...+.++ --+..+.+.+
T Consensus 217 ie~CP~SN~~~~~~~~~~~--hP~~~~~~~G 245 (305)
T cd00443 217 IEVCPTSNVVLGTVQSYEK--HPFMRFFKAG 245 (305)
T ss_pred EEECcchhhhhcCCCChhh--ChHHHHHHCC
Confidence 344 4556666443321 1244455555
No 441
>KOG2584|consensus
Probab=74.74 E-value=28 Score=33.65 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=48.2
Q ss_pred HhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcC--cEEEEecCCCCHHHHHHHHHhCCCe
Q psy8190 111 KSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDY 171 (348)
Q Consensus 111 ~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~--~~i~~~~g~l~~e~l~~Lk~aG~~~ 171 (348)
.+.|+..|.+..+-...+...-+++.+.++.+++.+ ..+++.+|.+-.|.-+++.+.|++.
T Consensus 156 ~ekGvnsF~~fmayk~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitg 218 (522)
T KOG2584|consen 156 KEKGVNSFKFFMAYKDLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITG 218 (522)
T ss_pred hhcCcceEEeeeeeccccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcC
Confidence 467999986665534444566788999999999864 4577889999999999999999875
No 442
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.74 E-value=18 Score=32.93 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHHHHhcCcEEEE---ecC---CCCHHHHHHHHHhCC----CeeeccCCCCHHHHhccCCCCCHHHHHHH
Q psy8190 129 DRDLDNIENMICEVKKIGLETCL---TLG---MLNENQAYRLKKVGL----DYYNHNLDTSPKLYGDIISTRDYENRLNT 198 (348)
Q Consensus 129 ~~~~~~~~~l~~~i~~~~~~i~~---~~g---~l~~e~l~~Lk~aG~----~~i~~g~et~~e~l~~i~~~~~~~~~~~~ 198 (348)
..+.+.+.+.++.+.+.|+.--+ +.| .++.++.+.+-+.=+ .++.+ +-.+. ..+.++.++.
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~v--------i~gv~-~~~~~~~~~~ 87 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPV--------IAGTG-SNNTAEAIEL 87 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcE--------EeccC-CccHHHHHHH
Confidence 46778888999888876654332 333 456655444433211 12211 11111 2367788888
Q ss_pred HHHHHHcCCeee-EeEeeecCCCHHHHHHHHHHHHhc
Q psy8190 199 LKNVRNVGINIC-CGGIIGLSESRDQRAELIFQLANL 234 (348)
Q Consensus 199 i~~~~~~G~~i~-~~~i~Glget~e~~~~~l~~l~~l 234 (348)
.+.+.++|..-. +.-.+-..-+.+++.+.++.+.+-
T Consensus 88 a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 88 TKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 889999998632 222222245678888888777664
No 443
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=74.65 E-value=65 Score=29.16 Aligned_cols=112 Identities=11% Similarity=0.102 Sum_probs=64.7
Q ss_pred HHHhCCCCEEEEeccC-------CCCCcccHHHHHHHHHHHHhc-CcE-EEE--ecCCC-CHH-----HHHHHHHhCCCe
Q psy8190 109 KAKSDGATRFCMGAAW-------RELKDRDLDNIENMICEVKKI-GLE-TCL--TLGML-NEN-----QAYRLKKVGLDY 171 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~-------~~~~~~~~~~~~~l~~~i~~~-~~~-i~~--~~g~l-~~e-----~l~~Lk~aG~~~ 171 (348)
.+.+.|++-++.++.. .+....+++.+....+.+.+- .-. +-+ ..+.. +.| -.+.++++|++.
T Consensus 30 i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~a 109 (263)
T TIGR00222 30 LFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQETGANA 109 (263)
T ss_pred HHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 3446688877754321 111235677888888887762 111 111 11111 233 245666799998
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee---------EeEeeec---CCCHHHHHHHHHHHHhcC
Q psy8190 172 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC---------CGGIIGL---SESRDQRAELIFQLANLN 235 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~---------~~~i~Gl---get~e~~~~~l~~l~~l~ 235 (348)
|.+ |.. .+..+.++.+.+.|+++. ....-|+ |.|.++..+.++.++.+.
T Consensus 110 Vki--Egg-------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e 170 (263)
T TIGR00222 110 VKL--EGG-------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALE 170 (263)
T ss_pred EEE--cCc-------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHH
Confidence 875 432 345567788999998877 3333223 678777777777776664
No 444
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=74.64 E-value=39 Score=31.71 Aligned_cols=158 Identities=14% Similarity=0.114 Sum_probs=84.0
Q ss_pred HHHhCCCCEEEEeccCCCCC---cccHHHHHHHHHHHHhcCcEEEEe---------cC---------CC-----------
Q psy8190 109 KAKSDGATRFCMGAAWRELK---DRDLDNIENMICEVKKIGLETCLT---------LG---------ML----------- 156 (348)
Q Consensus 109 ~~~~~G~~~i~l~gg~~~~~---~~~~~~~~~l~~~i~~~~~~i~~~---------~g---------~l----------- 156 (348)
.+++.|+..|.+--- .+|. ..+.++..++.+++++.|+.+.+. || .+
T Consensus 32 ilk~~G~N~vRlRvw-v~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~ 110 (332)
T PF07745_consen 32 ILKDHGVNAVRLRVW-VNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYD 110 (332)
T ss_dssp HHHHTT--EEEEEE--SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEec-cCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 345678887654221 1222 247889999999999988877652 22 11
Q ss_pred -CHHHHHHHHHhCC--CeeeccCCCCHHHHhccCCCCCHHHHHHHH----HHHHHcCCeeeEeEeeec--CCCHHHHHHH
Q psy8190 157 -NENQAYRLKKVGL--DYYNHNLDTSPKLYGDIISTRDYENRLNTL----KNVRNVGINICCGGIIGL--SESRDQRAEL 227 (348)
Q Consensus 157 -~~e~l~~Lk~aG~--~~i~~g~et~~e~l~~i~~~~~~~~~~~~i----~~~~~~G~~i~~~~i~Gl--get~e~~~~~ 227 (348)
+.+.+..|+++|+ +.|.+|=|++.-++--..+...++.....+ +.+|+.+- .+-+|+-+ +...+...--
T Consensus 111 yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~~~~~~~~ 188 (332)
T PF07745_consen 111 YTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGDNDLYRWF 188 (332)
T ss_dssp HHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCchHHHHHH
Confidence 2357789999997 667777777555554444445555544443 44444332 22334444 5555555555
Q ss_pred HHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q psy8190 228 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT 278 (348)
Q Consensus 228 l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~ 278 (348)
+..+.+.+...|.|+++.+ |. +.. +...+...+...+.-..+
T Consensus 189 f~~l~~~g~d~DviGlSyY-P~-----w~~---~l~~l~~~l~~l~~ry~K 230 (332)
T PF07745_consen 189 FDNLKAAGVDFDVIGLSYY-PF-----WHG---TLEDLKNNLNDLASRYGK 230 (332)
T ss_dssp HHHHHHTTGG-SEEEEEE--ST-----TST----HHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCCCcceEEEecC-CC-----Ccc---hHHHHHHHHHHHHHHhCC
Confidence 6666665533677777543 32 211 556666666654443344
No 445
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=74.60 E-value=70 Score=29.36 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=104.5
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.+.+...++.+.+.+..-|.-.+.+ .......+.+..+++.+.+ ..+++.++.. .-+.+.++.-.++|+++|=+
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~~~~-~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~- 102 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSPVILQISPS-EVKYMGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMI- 102 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS-EEEEEEHH-HHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEE-
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcchh-hhhhhhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccc-
Confidence 456777777777777766554333221 1122355777778777765 5888888776 45688899999999998865
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeec-CC-CH--------HHHHHHHHHHHhcCCCCCeeec
Q psy8190 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGL-SE-SR--------DQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Gl-ge-t~--------e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+.|..-|+. +.....+.++.+|..|+.+- .+-+-|. +. .. -+-.+..+|+++.+ +|.+.+
T Consensus 103 -DgS~l~~ee-----Ni~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tg--vD~LAv 174 (287)
T PF01116_consen 103 -DGSALPFEE-----NIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETG--VDALAV 174 (287)
T ss_dssp -E-TTS-HHH-----HHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHT--TSEEEE
T ss_pred -cCCcCCHHH-----HHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhC--CCEEEE
Confidence 332111221 44567788999999998654 5656554 11 11 13456677788887 777554
Q ss_pred ccccccCCCCCC--C---CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy8190 244 NNLVQIKGTPLY--G---SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 244 ~~l~P~~gT~l~--~---~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
.. ||.-. . .|.++.+.+.++-...+ +..+-+-+|. .+..+.-..+...|++-+
T Consensus 175 ai-----Gt~HG~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlHGgS-G~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 175 AI-----GTAHGMYKGGKKPKLDFDRLKEIREAVP----DIPLVLHGGS-GLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp -S-----SSBSSSBSSSSSTC--HHHHHHHHHHHH----TSEEEESSCT-TS-HHHHHHHHHTTEEEE
T ss_pred ec-----CccccccCCCCCcccCHHHHHHHHHhcC----CCCEEEECCC-CCCHHHHHHHHHcCceEE
Confidence 32 33211 1 22334443444333332 3222221211 233445566788888887
No 446
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=74.54 E-value=6.6 Score=36.79 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec---------------CCC
Q psy8190 156 LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL---------------SES 220 (348)
Q Consensus 156 l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl---------------get 220 (348)
...+.++.||++|++.|.+-+=.+|.- ....+.+..++..++++++|+++-.++-|.= +.+
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRvwv~P~~----~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~ 100 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRVWVNPYD----GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLS 100 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-SS-TT----TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSS
T ss_pred CCCCHHHHHHhcCCCeEEEEeccCCcc----cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCC
Confidence 356889999999999988755332222 2234899999999999999999999988721 123
Q ss_pred HHHHH--------HHHHHHHhcCCCCCeeecc------cccccCCCCCCCCCCCCHHHHHHHH----HHHHHHCCCCce
Q psy8190 221 RDQRA--------ELIFQLANLNPYPESVPIN------NLVQIKGTPLYGSSILDPLEFIRTI----AVARITMPTSRI 281 (348)
Q Consensus 221 ~e~~~--------~~l~~l~~l~~~~~~i~~~------~l~P~~gT~l~~~~~~~~~~~~~~~----a~~R~~lp~~~i 281 (348)
.+++. +.|..|.+.+..|+.|.+- .+-|... ......+.+++ ...|...|+..|
T Consensus 101 ~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~-------~~~~~~~a~ll~ag~~AVr~~~p~~kV 172 (332)
T PF07745_consen 101 FDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK-------PSNWDNLAKLLNAGIKAVREVDPNIKV 172 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC-------TT-HHHHHHHHHHHHHHHHTHSSTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC-------ccCHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 34433 4445555555446676653 2222221 33445556665 445666777543
No 447
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=74.48 E-value=70 Score=29.29 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=86.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecC-CCCHHHHHHHHHhCCCeeec
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG-MLNENQAYRLKKVGLDYYNH 174 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~ 174 (348)
..+.+.+...++.+.+.+..-|.-.+-+ .....+.+.+..+++.+.+ ..+++.++.. .-+.|.+..-.++|+++|=+
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIlq~s~~-~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~ 101 (282)
T TIGR01858 23 IHNLETIQAVVETAAEMRSPVILAGTPG-TFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMI 101 (282)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCcc-HHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEee
Confidence 3456777777777777666554332221 2223456778888887765 5788888877 45789999999999998765
Q ss_pred cCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeec-CC----C----HHHHHHHHHHHHhcCCCCCeeec
Q psy8190 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGL-SE----S----RDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 175 g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Gl-ge----t----~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
+.|.--|+ .+.+...+.++.+|..|+.+- .+-+-|- +. + .-+-.+..+|+++.+ +|.+-+
T Consensus 102 --DgS~lp~e-----eNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tg--vD~LAv 172 (282)
T TIGR01858 102 --DGSHFPFA-----QNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATG--VDSLAV 172 (282)
T ss_pred --cCCCCCHH-----HHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHC--cCEEec
Confidence 33211111 245667788899999998664 4544343 21 1 112355667777777 776544
Q ss_pred c
Q psy8190 244 N 244 (348)
Q Consensus 244 ~ 244 (348)
.
T Consensus 173 a 173 (282)
T TIGR01858 173 A 173 (282)
T ss_pred c
Confidence 3
No 448
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=74.34 E-value=78 Score=29.77 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC---CCCC---cccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCee
Q psy8190 99 SIESVITAAQKAKSDGATRFCMGAAW---RELK---DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 99 ~~eei~~~~~~~~~~G~~~i~l~gg~---~~~~---~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i 172 (348)
+.+++++.++.+++.|.+-+ .++.. ++|+ ....+.+..+.+..++.|+.+.+ ...+.+.++.+.+. ++.+
T Consensus 105 s~e~~~~~A~~lk~~ga~~~-r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t--ev~d~~~~~~l~~~-vd~l 180 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQIL-RGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT--EVMDPRDVELVAEY-VDIL 180 (335)
T ss_pred CHHHHHHHHHHHHHhchhhc-cCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEE--eeCCHHHHHHHHHh-CCeE
Confidence 56888888888887776522 11111 1111 01223333333334456887754 34777888888888 8888
Q ss_pred eccCCC--CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccC
Q psy8190 173 NHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 250 (348)
Q Consensus 173 ~~g~et--~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~ 250 (348)
.++--. +..+ ++.+.+.|.++. +=-|+.-|.+++...++.+..-+ ...+.+ -..
T Consensus 181 qIgAr~~~N~~L----------------L~~va~~~kPVi--Lk~G~~~ti~E~l~A~e~i~~~G--N~~viL----~er 236 (335)
T PRK08673 181 QIGARNMQNFDL----------------LKEVGKTNKPVL--LKRGMSATIEEWLMAAEYILAEG--NPNVIL----CER 236 (335)
T ss_pred EECcccccCHHH----------------HHHHHcCCCcEE--EeCCCCCCHHHHHHHHHHHHHcC--CCeEEE----EEC
Confidence 776432 2222 333444555442 22344457889999999888776 333322 223
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-c--ccccccchhhHHHHHHhCcceeeeCCee
Q psy8190 251 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-S--AGRKEMGETTQAFCFLAGANSIFYGDKL 312 (348)
Q Consensus 251 gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-s--~g~~~l~~~~~~~~l~~GAn~~~~~~~~ 312 (348)
|+.-+. +.+...-.+..+...|....-.-|-. + .|...+-+.....|+.+||++++.+...
T Consensus 237 G~~tf~-~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 237 GIRTFE-TATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred CCCCCC-CcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence 442221 11122233445555554432221111 1 2222223467788999999999776543
No 449
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=73.91 E-value=30 Score=32.02 Aligned_cols=77 Identities=8% Similarity=0.082 Sum_probs=54.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCC-CHH---HHHHHHHhCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGML-NEN---QAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l-~~e---~l~~Lk~aG~ 169 (348)
.+.+.+.+.++.+.+.|++.|++.|. |+.+ ..+.+.-.++++...+. .+.+.+..+.. +++ .++...++|+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~-~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECA-TLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccch-hCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCC
Confidence 78889999999999999999988665 4433 46677777888766652 46676676643 333 4455566799
Q ss_pred Ceeecc
Q psy8190 170 DYYNHN 175 (348)
Q Consensus 170 ~~i~~g 175 (348)
|.+.+-
T Consensus 105 d~vlv~ 110 (309)
T cd00952 105 DGTMLG 110 (309)
T ss_pred CEEEEC
Confidence 988754
No 450
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=73.86 E-value=90 Score=30.25 Aligned_cols=193 Identities=15% Similarity=-0.000 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHh-c-CcEEEEec-CCCCH----HHHHHHHHhCCCeeeccCCC-CHHHHhccCC--CCCHHHHHHHHHH
Q psy8190 132 LDNIENMICEVKK-I-GLETCLTL-GMLNE----NQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTLKN 201 (348)
Q Consensus 132 ~~~~~~l~~~i~~-~-~~~i~~~~-g~l~~----e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~--~~~~~~~~~~i~~ 201 (348)
.+++.+.++.+++ . +..+.++. |..+. +.++.+.++|++.+.+++-. .....+..+. .++.+...+.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~ 162 (420)
T PRK08318 83 LEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRW 162 (420)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHH
Confidence 3555555555543 2 34444553 33133 34556667799999988876 3111121211 2577888888888
Q ss_pred HHHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeec-cccccc--------CCCC-C------CCCC-CCCHH
Q psy8190 202 VRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI-NNLVQI--------KGTP-L------YGSS-ILDPL 263 (348)
Q Consensus 202 ~~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~-~~l~P~--------~gT~-l------~~~~-~~~~~ 263 (348)
+++. .+++.+=+ .. +..++.+.++.+.+.+ .+.+.+ +.+... .++| + .... ++-..
T Consensus 163 v~~~~~~Pv~vKl--~p--~~~~~~~~a~~~~~~G--adgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p 236 (420)
T PRK08318 163 VKRGSRLPVIVKL--TP--NITDIREPARAAKRGG--ADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKP 236 (420)
T ss_pred HHhccCCcEEEEc--CC--CcccHHHHHHHHHHCC--CCEEEEecccCccccccccccCCCceecCCCCcccccchhhhH
Confidence 8774 34443332 12 2233556666677777 777663 222210 1122 1 1111 11112
Q ss_pred HHHHHHHHHHHHCC--CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCC
Q psy8190 264 EFIRTIAVARITMP--TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGIN 333 (348)
Q Consensus 264 ~~~~~~a~~R~~lp--~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~ 333 (348)
-.+++++..+...+ +..|-..+|-.+ .+-....+.+||+.++.+.-. ...|+.. .++.+.+++.|+.
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s--~~da~e~i~aGA~~Vqi~ta~-~~~gp~ii~~I~~~L~~~l~~~g~~ 310 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIET--WRDAAEFILLGAGTVQVCTAA-MQYGFRIVEDMISGLSHYMDEKGFA 310 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCC--HHHHHHHHHhCCChheeeeee-ccCCchhHHHHHHHHHHHHHHcCcc
Confidence 24566666655443 333333343322 233444577999999765322 1234442 3556778888875
No 451
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=73.83 E-value=36 Score=31.17 Aligned_cols=109 Identities=10% Similarity=0.112 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHh-CCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCCC-HH---HHHHHHHh
Q psy8190 97 ILSIESVITAAQKAKS-DGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGMLN-EN---QAYRLKKV 167 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~-~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l~-~e---~l~~Lk~a 167 (348)
..+.+.+.+.++.+.+ .|++.|++.|. ++.. ..+.+.-.++++...+. .+.+.+..|..+ ++ ..+..+++
T Consensus 20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~-~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAF-LLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred CcCHHHHHHHHHHHHhcCCCCEEEECCCccccc-cCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence 3678999999999999 99999988764 3333 45667777777666542 366666666443 33 44556677
Q ss_pred CCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEe
Q psy8190 168 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGI 214 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i 214 (348)
|++.+.+-.- .|- ..+.+..++-++.+.+ .++++...-+
T Consensus 99 Gad~v~v~~P----~y~----~~~~~~l~~~f~~va~a~~lPv~iYn~ 138 (293)
T PRK04147 99 GYDAISAVTP----FYY----PFSFEEICDYYREIIDSADNPMIVYNI 138 (293)
T ss_pred CCCEEEEeCC----cCC----CCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9998875431 111 1244566666666544 4566544433
No 452
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=73.81 E-value=68 Score=28.88 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCH
Q psy8190 102 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180 (348)
Q Consensus 102 ei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~ 180 (348)
.+.+.++.+.+.|+.-+.+.+.. ....-+. +.++.+++ .++++-..-=.+++.++...+++|.|.+.+....
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~-~~f~g~~----~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~-- 143 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDE-RFFQGSL----EYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA-- 143 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEeccc-ccCCCCH----HHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc--
Confidence 34455566667788887664431 1112233 33344444 3555543323566678999999999999875532
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCC
Q psy8190 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 260 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~ 260 (348)
.+.++..+.++.+++.|+.+-+.+ .+.++. ..+.+++ ++.+.++..- +... .+
T Consensus 144 ---------l~~~~l~~li~~a~~lGl~~lvev-----h~~~E~----~~A~~~g--adiIgin~rd------l~~~-~~ 196 (260)
T PRK00278 144 ---------LDDEQLKELLDYAHSLGLDVLVEV-----HDEEEL----ERALKLG--APLIGINNRN------LKTF-EV 196 (260)
T ss_pred ---------CCHHHHHHHHHHHHHcCCeEEEEe-----CCHHHH----HHHHHcC--CCEEEECCCC------cccc-cC
Confidence 123577788899999998764442 245554 3355677 8888865321 1111 22
Q ss_pred CHHHHHHHHHHHHHHCCCC--ceeccccccccchhhHHHHHHhCcceeeeCCeec
Q psy8190 261 DPLEFIRTIAVARITMPTS--RIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 313 (348)
Q Consensus 261 ~~~~~~~~~a~~R~~lp~~--~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~ 313 (348)
+.+...+ +.+ .+|+. .|..++.+ .++.....+.+|||.++.|..+.
T Consensus 197 d~~~~~~---l~~-~~p~~~~vIaegGI~---t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 197 DLETTER---LAP-LIPSDRLVVSESGIF---TPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred CHHHHHH---HHH-hCCCCCEEEEEeCCC---CHHHHHHHHHcCCCEEEECHHHc
Confidence 3332222 222 35653 23333211 24445567889999998887653
No 453
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=73.76 E-value=65 Score=32.90 Aligned_cols=112 Identities=22% Similarity=0.227 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEE--Ee--cCC-CCH----HHHHHHHHhCCCeee
Q psy8190 103 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC--LT--LGM-LNE----NQAYRLKKVGLDYYN 173 (348)
Q Consensus 103 i~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~--~~--~g~-l~~----e~l~~Lk~aG~~~i~ 173 (348)
+...++.+.+.|++.|.+.... -+.+.+...++.+++.|..+. ++ ... -+. +.++.+.++|++++.
T Consensus 99 v~~~v~~a~~~Gid~~rifd~l-----nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~ 173 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVFDAM-----NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLC 173 (593)
T ss_pred HHHHHHHHHhcCCCEEEEeeeC-----CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEE
Confidence 3344566677888888776541 135677778888887766432 21 111 112 456677778888887
Q ss_pred cc--CCC-CH-HHH---hccC----------CCCCHHHHHHHHHHHHHcCCeeeEeEeeecCC
Q psy8190 174 HN--LDT-SP-KLY---GDII----------STRDYENRLNTLKNVRNVGINICCGGIIGLSE 219 (348)
Q Consensus 174 ~g--~et-~~-e~l---~~i~----------~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glge 219 (348)
+. ... .| +++ +.++ ...+..-.....-.+-++|..+.-+-+-|+|+
T Consensus 174 i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~ 236 (593)
T PRK14040 174 IKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSM 236 (593)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccc
Confidence 73 222 22 222 2211 11244445555556667898654444667743
No 454
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.69 E-value=39 Score=30.54 Aligned_cols=109 Identities=11% Similarity=0.213 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHHHHHHh---CCCe
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAYRLKKV---GLDY 171 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~~Lk~a---G~~~ 171 (348)
-..+++.+.++.+++.|.. +.+..- ..+..+.+++.++++.+.+.+.. +++ +.|.++++.+..+-++ -++.
T Consensus 106 ~~~~~~~~~i~~ak~~G~~-v~~~~~--~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~ 182 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYE-VFFNLM--AISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDK 182 (266)
T ss_pred ccHHHHHHHHHHHHHCCCe-EEEEEE--eecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCC
Confidence 3567788888888888864 323221 11235678899999888876543 333 5788887665544433 1111
Q ss_pred -eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCC
Q psy8190 172 -YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSE 219 (348)
Q Consensus 172 -i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glge 219 (348)
+.+++ |...++.-.....-.+-++|....-+-+.|+|+
T Consensus 183 ~~~i~~----------H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 183 DIKLGF----------HAHNNLQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred CceEEE----------EeCCCccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 22222 111133333333333445788654444778865
No 455
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=73.56 E-value=7.5 Score=36.85 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=55.2
Q ss_pred HHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCC
Q psy8190 110 AKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIST 189 (348)
Q Consensus 110 ~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~ 189 (348)
+.+.|++.+.+-.|. + .+.+.++-+. |+.+.+|.-+++.+.++.|.++|.+.=. +...-..|.+-.++
T Consensus 85 ~~~lGi~~lRlD~Gf-~-----~~~ia~ls~n----g~~I~LNASti~~~~l~~L~~~~~~~~~--i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 85 FKELGIDGLRLDYGF-S-----GEEIAKLSKN----GIKIELNASTITEEELDELIKYGANFSN--IIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHT-SEEEESSS--S-----CHHHHHHTTT-----SEEEEETTT--CCHHHHHCCTT--GGG--EEEE---B-STT-S
T ss_pred HHHcCCCEEEECCCC-C-----HHHHHHHHhC----CCEEEEECCCCChHHHHHHHHhcCCHHH--eEEEecccCCCCCC
Confidence 445688888887662 1 1333333322 7999999999999999999999986321 12223456666667
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEe
Q psy8190 190 RDYENRLNTLKNVRNVGINICCG 212 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~ 212 (348)
-+.+...+.=+++|+.|+++.+-
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AF 175 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAF 175 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEE
Confidence 89999999999999999976543
No 456
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=73.32 E-value=5 Score=36.42 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCeeeccCCC-CH---HH-----HhccCCCC-CHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHH
Q psy8190 159 NQAYRLKKVGLDYYNHNLDT-SP---KL-----YGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAEL 227 (348)
Q Consensus 159 e~l~~Lk~aG~~~i~~g~et-~~---e~-----l~~i~~~~-~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~ 227 (348)
+.|..|++.|++.|.+..=. ++ .- |..+.+.. +.++..+.++.+|+.|+.|..++++.+ +...+-....
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 56888999999999885321 21 11 22344433 789999999999999999999999998 5554443333
Q ss_pred H
Q psy8190 228 I 228 (348)
Q Consensus 228 l 228 (348)
.
T Consensus 88 ~ 88 (316)
T PF00128_consen 88 L 88 (316)
T ss_dssp H
T ss_pred c
Confidence 3
No 457
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=73.23 E-value=74 Score=29.03 Aligned_cols=184 Identities=17% Similarity=0.109 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHhC----CCCEEEEeccCC-----CCCc---ccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHH
Q psy8190 99 SIESVITAAQKAKSD----GATRFCMGAAWR-----ELKD---RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLK 165 (348)
Q Consensus 99 ~~eei~~~~~~~~~~----G~~~i~l~gg~~-----~~~~---~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk 165 (348)
+.|.+++.++.+++. |+.. .+.|+.. +|+. ...+.=+++++++++ .|+.+. ....+.+.++...
T Consensus 28 s~e~~~~~A~~lk~~~~~~g~~~-i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvv--TeV~~~~q~~~va 104 (290)
T PLN03033 28 SEEHILRMAKHIKDISTKLGLPL-VFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIV--TDVHESSQCEAVG 104 (290)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcE-EEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceE--EeeCCHHHHHHHH
Confidence 456677777766653 7654 4554422 1111 234667788888887 588874 4457888899999
Q ss_pred HhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 166 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 166 ~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
++ +|-+.++.=.. +-.+.++.+.+.|-.|. +==|..-+++++...++++..-+ ...|
T Consensus 105 e~-~DilQIgAr~~--------------rqtdLL~a~~~tgkpV~--lKkGq~~t~~e~~~aaeki~~~G--N~~v---- 161 (290)
T PLN03033 105 KV-ADIIQIPAFLC--------------RQTDLLVAAAKTGKIIN--IKKGQFCAPSVMRNSAEKVRLAG--NPNV---- 161 (290)
T ss_pred hh-CcEEeeCcHHH--------------HHHHHHHHHHccCCeEE--eCCCCCCCHHHHHHHHHHHHHcC--CCcE----
Confidence 98 68887764111 11233444444444332 12244567788888888887776 3332
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHH-CCC----Cc-eec------------cccccccchhhHHHHHHhCcceee
Q psy8190 246 LVQIKGTPLYGSSILDPLEFIRTIAVARIT-MPT----SR-IRM------------SAGRKEMGETTQAFCFLAGANSIF 307 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~-lp~----~~-i~~------------s~g~~~l~~~~~~~~l~~GAn~~~ 307 (348)
..-+.|+.|. +.... -.++-+.+.+.. +|= .| ++. ++|+..+-+.+...++.+|||++|
T Consensus 162 iLcERG~tFg-y~~lv--~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlf 238 (290)
T PLN03033 162 MVCERGTMFG-YNDLI--VDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIF 238 (290)
T ss_pred EEEeCCCCcC-CCCcc--cchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 2334566442 21111 111222222321 221 12 222 234434446778889999999998
Q ss_pred eCCe
Q psy8190 308 YGDK 311 (348)
Q Consensus 308 ~~~~ 311 (348)
.+..
T Consensus 239 iEvH 242 (290)
T PLN03033 239 MEVH 242 (290)
T ss_pred EEec
Confidence 8754
No 458
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=73.11 E-value=17 Score=32.87 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=65.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCC-------HHHHHHHHHhCCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN-------ENQAYRLKKVGLD 170 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~-------~e~l~~Lk~aG~~ 170 (348)
.++.+.+ ..+.+.|+++|+++.- .-.+....+.+.+.++..+...-.+.+..-.+. .+.++.+.++=..
T Consensus 58 ~~~~eaL---~~L~~~G~~~V~VQpl-hiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~ 133 (262)
T PF06180_consen 58 DSPEEAL---AKLADEGYTEVVVQPL-HIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAE 133 (262)
T ss_dssp --HHHHH---HHHHHCT--EEEEEE---SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHC
T ss_pred CCHHHHH---HHHHHCCCCEEEEeec-ceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHH
Confidence 4555555 4567889999999875 212233344445544444333345554433444 6777777665222
Q ss_pred eeeccCCCCHHHHhccCCCCCHHHHHHHHHHH-HHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc
Q psy8190 171 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNV-RNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 249 (348)
Q Consensus 171 ~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~-~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~ 249 (348)
.+.-.-....-+|-.-+..|........++.. ++.|.+ .+.+|--|..-++.+.+..+++-+ ...+.+.||+-.
T Consensus 134 ~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~---~v~vgtvEG~P~~~~vi~~L~~~g--~k~V~L~PlMlV 208 (262)
T PF06180_consen 134 EFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYP---NVFVGTVEGYPSLEDVIARLKKKG--IKKVHLIPLMLV 208 (262)
T ss_dssp CS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-T---TEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEESSS
T ss_pred hccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCC---eEEEEEeCCCCCHHHHHHHHHhcC--CCeEEEEecccc
Confidence 22200000011222222334444455555544 445532 223333121122455566667776 788999998877
Q ss_pred CCC
Q psy8190 250 KGT 252 (348)
Q Consensus 250 ~gT 252 (348)
.|.
T Consensus 209 AGd 211 (262)
T PF06180_consen 209 AGD 211 (262)
T ss_dssp --H
T ss_pred cch
Confidence 664
No 459
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.08 E-value=51 Score=32.87 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=55.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-CcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++++..+.++.+.+.|++.+.+... + ..-.+..+.++.+++. +-.+.+-.| ..+.+.++.|.++|+|.+.+|
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a---~--g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSS---E--GYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCc---c--cccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 34556778888889999999887532 1 1224667888888874 322444454 689999999999999999988
Q ss_pred CCC
Q psy8190 176 LDT 178 (348)
Q Consensus 176 ~et 178 (348)
+..
T Consensus 313 ~g~ 315 (502)
T PRK07107 313 IGG 315 (502)
T ss_pred CCC
Confidence 776
No 460
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=73.07 E-value=30 Score=31.60 Aligned_cols=127 Identities=10% Similarity=0.044 Sum_probs=76.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHh---cCcEEEEecCCCC-H---HHHHHHHHhC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKK---IGLETCLTLGMLN-E---NQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~---~~~~i~~~~g~l~-~---e~l~~Lk~aG 168 (348)
..+.+.+.+.++.+.+.|++.+++.|. ++. ...+.+.-.++++...+ ..+.+.+..+..+ . +.++..+++|
T Consensus 18 ~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~-~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEAGVDGLVVLGSTGEF-YSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp SB-HHHHHHHHHHHHHTTSSEEEESSTTTTG-GGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCccc-ccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcC
Confidence 367889999999999999999988764 333 24556666777766654 2567776666543 3 4556666779
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeeec-CCCHHHHHHHHHHHHhc
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGL-SESRDQRAELIFQLANL 234 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l 234 (348)
++.+.+..- .| ...+.++..+-++.+.+ .++++..+-.-+. |-... .+++..+.++
T Consensus 97 ad~v~v~~P----~~----~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls--~~~l~~L~~~ 154 (289)
T PF00701_consen 97 ADAVLVIPP----YY----FKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLS--PETLARLAKI 154 (289)
T ss_dssp -SEEEEEES----TS----SSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSH--HHHHHHHHTS
T ss_pred ceEEEEecc----cc----ccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCC--HHHHHHHhcC
Confidence 998875321 11 12366677777766665 4577766555433 33221 2344445554
No 461
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=73.00 E-value=8.5 Score=38.07 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCeeeEeEeeec-C
Q psy8190 191 DYENRLNTLKNVRNVGINICCGGIIGL-S 218 (348)
Q Consensus 191 ~~~~~~~~i~~~~~~G~~i~~~~i~Gl-g 218 (348)
+.++..+.++.||+.|++|..++++.+ +
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 888999999999999999999999999 5
No 462
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=72.86 E-value=34 Score=31.09 Aligned_cols=111 Identities=11% Similarity=0.063 Sum_probs=71.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCC-CH---HHHHHHHHhC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGML-NE---NQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l-~~---e~l~~Lk~aG 168 (348)
.++.+.+.+.++.+.+.|++.+++.|. ++. ...+.+...++++...+. .+.+.+..+.. ++ +.++..+++|
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGES-PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcch-hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 378899999999999999999987654 343 245667777777766652 45666665543 33 3455666779
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEeee
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIG 216 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~G 216 (348)
++.+.+..-. .+ ..+.++.++.++.+.+ .++++...-+-+
T Consensus 96 ~d~v~~~~P~---~~-----~~~~~~l~~~~~~ia~~~~~pi~lYn~P~ 136 (284)
T cd00950 96 ADAALVVTPY---YN-----KPSQEGLYAHFKAIAEATDLPVILYNVPG 136 (284)
T ss_pred CCEEEEcccc---cC-----CCCHHHHHHHHHHHHhcCCCCEEEEEChh
Confidence 9988764321 11 1245677777777655 467666554433
No 463
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=72.81 E-value=51 Score=31.55 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=37.6
Q ss_pred cCHHHHHH----HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EE--EecCCCCHHHHHHH
Q psy8190 98 LSIESVIT----AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TC--LTLGMLNENQAYRL 164 (348)
Q Consensus 98 ~~~eei~~----~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~--~~~g~l~~e~l~~L 164 (348)
++.+++++ .++.+++.|.. +.++. ++.+..+.+++.++++.+.+.+.. +. =+.|.++++.+..+
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~~-v~~~~--ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~l 179 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGLY-VSFSA--EDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYEL 179 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEe--ccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHH
Confidence 55666665 44445566753 44432 233455778888888888876543 22 25677777654433
No 464
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=72.78 E-value=1.2e+02 Score=31.09 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc-Cc--EEEEe--cCCCCHHHHHHHHHhCCCee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GL--ETCLT--LGMLNENQAYRLKKVGLDYY 172 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~-~~--~i~~~--~g~l~~e~l~~Lk~aG~~~i 172 (348)
.+++.+++.++.+.+.|+..|+|.+-. ....+..+.++++.+++. ++ .+|++ .|. .-...-.-.++|++.+
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~---G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl-a~An~laAv~aGad~v 226 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMA---GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGL-APMTYLKAVEAGVDII 226 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcC---CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCc-HHHHHHHHHHhCCCEE
Confidence 367888888888888899988886531 123456788888888763 33 33333 333 3333334457899988
Q ss_pred eccCC
Q psy8190 173 NHNLD 177 (348)
Q Consensus 173 ~~g~e 177 (348)
...+.
T Consensus 227 D~ai~ 231 (592)
T PRK09282 227 DTAIS 231 (592)
T ss_pred Eeecc
Confidence 76554
No 465
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=72.71 E-value=26 Score=31.01 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeecCCCCCCCCcCCCCCCCCCCCccccccCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccH-HHHH
Q psy8190 59 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDL-DNIE 136 (348)
Q Consensus 59 g~~v~~~~~i~i~t~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~-~~~~ 136 (348)
+..+-..+.+-+ .++|. .....+. .+- ..+.+++......+.+ .|.+-||+-.|... ..+. +.+.
T Consensus 108 ~~e~ip~gYivi-~~g~~-------v~~v~~a--~pi-~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa--~~~v~~~v~ 174 (230)
T PF01884_consen 108 GLEVIPTGYIVI-NPGSK-------VARVTGA--RPI-PLDKPEIAAAAALAAEYLGMPIIYLEAGSGA--YGPVPEEVI 174 (230)
T ss_dssp HCCEEEEEEEEE-STTSH-------HHHHTTB--------SHHHHHHHHHHHHHHTT-SEEEEE--TTS--SS-HHHHHH
T ss_pred cceecceEEEEE-CCCCc-------eEEeecc--eec-CCCcHHHHHHHHHHHHHhCCCEEEEEeCCCC--CCCccHHHH
Confidence 466766666666 45543 1111111 112 2466777776665554 59999999764112 2223 3344
Q ss_pred HHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 137 NMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 137 ~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
+..+.+ .+..+.+-.|..+.|.++.+.++|.|.|-+|
T Consensus 175 ~~~~~~--~~~~LivGGGIrs~e~A~~~~~aGAD~IVvG 211 (230)
T PF01884_consen 175 AAVKKL--SDIPLIVGGGIRSPEQAREMAEAGADTIVVG 211 (230)
T ss_dssp HHHHHS--SSSEEEEESS--SHHHHHHHHCTTSSEEEES
T ss_pred HHHHhc--CCccEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence 333333 3678888899999999999999999998865
No 466
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.56 E-value=24 Score=32.39 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
++++++.+.|++.|.+-- .+++.+.+.++.++. .+.+.+ .|.++.+.+..+.+.|+|.++.|.=|
T Consensus 216 eea~eA~~aGaDiImLDn-------mspe~l~~av~~~~~-~~~lEa-SGGIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 216 AQLETALAHGAQSVLLDN-------FTLDMMREAVRVTAG-RAVLEV-SGGVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred HHHHHHHHcCCCEEEECC-------CCHHHHHHHHHhhcC-CeEEEE-ECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 344445567887776621 245777888776654 233333 46699999999999999999988655
No 467
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=72.46 E-value=64 Score=30.12 Aligned_cols=110 Identities=11% Similarity=0.173 Sum_probs=69.2
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEEecCCCCHHHHHHHHHhCC-Ceeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCLTLGMLNENQAYRLKKVGL-DYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~~~g~l~~e~l~~Lk~aG~-~~i~~g 175 (348)
....+|++.+... ++..+.+++-| -.+......+++.|+ .+++|...++++.++.+-.-|. ++|-=|
T Consensus 74 ~dl~eIi~~l~~~---~~~~islTTNG--------~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~G 142 (322)
T COG2896 74 KDLDEIIARLARL---GIRDLSLTTNG--------VLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEG 142 (322)
T ss_pred cCHHHHHHHHhhc---ccceEEEecch--------hhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHH
Confidence 5677777665544 78888886532 146677788888876 5888999999988777763221 222223
Q ss_pred CCCC-HHHHh--c----cCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecC
Q psy8190 176 LDTS-PKLYG--D----IISTRDYENRLNTLKNVRNVGINICCGGIIGLS 218 (348)
Q Consensus 176 ~et~-~e~l~--~----i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glg 218 (348)
++.+ +.-+. + +-++.+-+++.+.++.+++.|+.+..--..-+|
T Consensus 143 I~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g 192 (322)
T COG2896 143 IDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLG 192 (322)
T ss_pred HHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEEEeecC
Confidence 3331 11121 1 224568899999999999999866543333333
No 468
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.45 E-value=34 Score=26.79 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=47.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEE-ecCCCCHHHHHHHHHhCCCeee
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYN 173 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~-~~g~l~~e~l~~Lk~aG~~~i~ 173 (348)
.+++++.+.+. +.+..-|.+++.. ....+.+.++++.+++.+. .+.+ -.|...++..+.++++|++.+.
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~----~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS----GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc----hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Confidence 56777776554 5577888886652 2345678888888888643 2222 3445677889999999999775
No 469
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=72.32 E-value=28 Score=31.31 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HhCCCeeecc
Q psy8190 104 ITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLK-KVGLDYYNHN 175 (348)
Q Consensus 104 ~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk-~aG~~~i~~g 175 (348)
.+.++.+.+.|+..+.+.+-.. +....+.+.+.++.+. .++++.++.|..+.+.+..+. +.|++.+.+|
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg 226 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAAG 226 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEc
Confidence 3344456678999988764211 1222344444444332 478899999999999999887 7999998865
No 470
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=72.28 E-value=79 Score=28.92 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCc-EEEEecCCCCHH----------------HHHHHHHh
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL-ETCLTLGMLNEN----------------QAYRLKKV 167 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~-~i~~~~g~l~~e----------------~l~~Lk~a 167 (348)
+.++.+.+.|+..+.+.+-+. .+.+.++.+++.++ .+.++...++++ .++.++++
T Consensus 75 ~iv~~l~~~g~~~v~i~TNG~--------ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~ 146 (302)
T TIGR02668 75 EIIRRIKDYGIKDVSMTTNGI--------LLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA 146 (302)
T ss_pred HHHHHHHhCCCceEEEEcCch--------HHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc
Confidence 333444556877787765321 12245555665544 455555544443 34455556
Q ss_pred CCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee
Q psy8190 168 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 210 (348)
Q Consensus 168 G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~ 210 (348)
|+..+.+++ -+.++.+.+++.+.++.+++.|+.+.
T Consensus 147 G~~~v~i~~--------v~~~g~n~~ei~~~~~~~~~~g~~~~ 181 (302)
T TIGR02668 147 GLTPVKLNM--------VVLKGINDNEIPDMVEFAAEGGAILQ 181 (302)
T ss_pred CCCcEEEEE--------EEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 654333221 23345688899999999999998765
No 471
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=72.27 E-value=89 Score=29.52 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=48.3
Q ss_pred HHHHHhCCCCEEEEeccCCC------CCcccHHHHHHHHHHHHhcCcEEEEecCC-------------------------
Q psy8190 107 AQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCLTLGM------------------------- 155 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~------~~~~~~~~~~~l~~~i~~~~~~i~~~~g~------------------------- 155 (348)
+..+.+.|+++|-|-|+-.+ |...+.....++++..+..|+.+...+|.
T Consensus 91 i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~ 170 (347)
T PRK13399 91 CQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQ 170 (347)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccc
Confidence 34566789999988776211 12234445556666666667776654431
Q ss_pred --CCHHHHHHHH-HhCCCeeeccCCCCHHHHh
Q psy8190 156 --LNENQAYRLK-KVGLDYYNHNLDTSPKLYG 184 (348)
Q Consensus 156 --l~~e~l~~Lk-~aG~~~i~~g~et~~e~l~ 184 (348)
.+++....+. +-|+|.+-+++.|.--.|+
T Consensus 171 ~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 202 (347)
T PRK13399 171 MLTDPDQAVDFVQRTGVDALAIAIGTSHGAYK 202 (347)
T ss_pred cCCCHHHHHHHHHHHCcCEEhhhhccccCCcC
Confidence 2345555555 4599999998888655565
No 472
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=72.05 E-value=32 Score=31.39 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=55.6
Q ss_pred cCHHHHHHH----HHHHHhCCCCE-EEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHHHHHHh--
Q psy8190 98 LSIESVITA----AQKAKSDGATR-FCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAYRLKKV-- 167 (348)
Q Consensus 98 ~~~eei~~~----~~~~~~~G~~~-i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~~Lk~a-- 167 (348)
++.+++++. ++.+++.|..- +.+... ..|+..+.+++.++++.+.+.|.. +++ +.|..++..+..+-+.
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~-~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDW-SNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeC-CCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 455555444 44455566532 333321 223355778888888888876543 332 5777777554433332
Q ss_pred -CCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCC
Q psy8190 168 -GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSE 219 (348)
Q Consensus 168 -G~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glge 219 (348)
.+..+.++ +|...+..--+...-.+-++|....-.-+.|+|+
T Consensus 187 ~~~~~~~i~----------~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe 229 (280)
T cd07945 187 KRYPNLHFD----------FHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE 229 (280)
T ss_pred hhCCCCeEE----------EEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc
Confidence 11112221 2212233333344444555787544334777764
No 473
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=72.01 E-value=79 Score=28.83 Aligned_cols=110 Identities=11% Similarity=0.050 Sum_probs=69.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhc---CcEEEEecCCC-CH---HHHHHHHHhC
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKI---GLETCLTLGML-NE---NQAYRLKKVG 168 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~---~~~i~~~~g~l-~~---e~l~~Lk~aG 168 (348)
..+.+.+.+.++.+.+.|++.+++.|. ++.+ ..+.+.-.++++.+.+. .+.+.+..+.. ++ +.++..+++|
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~-~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTGESP-TLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCCccc-cCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 378899999999999999999987664 3433 45666667777666552 35666665543 33 4556667779
Q ss_pred CCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHH-cCCeeeEeEee
Q psy8190 169 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGII 215 (348)
Q Consensus 169 ~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~-~G~~i~~~~i~ 215 (348)
++.+.+..-. |- ..+.+...+.++.+.+ .++++...-+-
T Consensus 97 ~d~v~~~pP~----~~----~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 97 ADGALVVTPY----YN----KPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred CCEEEECCCc----CC----CCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 9988864321 11 1245666666666554 45665544433
No 474
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=71.96 E-value=46 Score=29.59 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHhcC
Q psy8190 156 LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLN 235 (348)
Q Consensus 156 l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~l~ 235 (348)
.+++.++.|+.+|++.++++=.. . -....+-..++++.++++|+.. +|.|.+.++-..- .+.+.+
T Consensus 63 ~~~~~~~~L~~~G~d~vslANNH---~-----~D~G~~gl~~Tl~~L~~~gi~~-----~Gag~~~~~a~~p--~i~~~~ 127 (250)
T PF09587_consen 63 APPEILDALKDAGFDVVSLANNH---I-----FDYGEEGLLDTLEALDKAGIPY-----VGAGRNLEEARRP--AIIEVN 127 (250)
T ss_pred CCHHHHHHHHHcCCCEEEecCCC---C-----ccccHHHHHHHHHHHHHCCCcE-----eECcCChHHhcCe--EEEEEC
Confidence 45788999999999988853211 1 1245677788999999999763 3455555443221 222333
Q ss_pred CCCCeeecccccccC---CCCCCC---------------CCCCCHHHHHHHHHHHHHHCCCCc-eeccccccccc-----
Q psy8190 236 PYPESVPINNLVQIK---GTPLYG---------------SSILDPLEFIRTIAVARITMPTSR-IRMSAGRKEMG----- 291 (348)
Q Consensus 236 ~~~~~i~~~~l~P~~---gT~l~~---------------~~~~~~~~~~~~~a~~R~~lp~~~-i~~s~g~~~l~----- 291 (348)
-..|.+..+.-.. ..+... ...+..+...+.++.+|. -.+.. +.+-||.+.-.
T Consensus 128 --g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~-~~D~vIv~~HwG~e~~~~p~~~ 204 (250)
T PF09587_consen 128 --GVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARK-KADVVIVSLHWGIEYENYPTPE 204 (250)
T ss_pred --CEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCEEEEEeccCCCCCCCCCHH
Confidence 2233333322111 000000 011223667777777771 11211 23346643211
Q ss_pred -hhhHHHHHHhCcceeeeC
Q psy8190 292 -ETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 292 -~~~~~~~l~~GAn~~~~~ 309 (348)
.......+.+|||.++.+
T Consensus 205 q~~~a~~lidaGaDiIiG~ 223 (250)
T PF09587_consen 205 QRELARALIDAGADIIIGH 223 (250)
T ss_pred HHHHHHHHHHcCCCEEEeC
Confidence 345666788999999754
No 475
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=71.91 E-value=42 Score=31.90 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=39.5
Q ss_pred cCHHHHH----HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EEE--ecCCCCHHHHHHHHHh
Q psy8190 98 LSIESVI----TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCL--TLGMLNENQAYRLKKV 167 (348)
Q Consensus 98 ~~~eei~----~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~~--~~g~l~~e~l~~Lk~a 167 (348)
++.++++ +.++.+++.|.. +.++.. +.+..+.+++.++++.+.+.+.. +++ +.|.++++.+..+-+.
T Consensus 105 ~~~~~~~~~~~~~i~~ak~~G~~-v~~~~e--da~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~ 178 (363)
T TIGR02090 105 KSRDEVLEKAVEAVEYAKEHGLI-VEFSAE--DATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKK 178 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCE-EEEEEe--ecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH
Confidence 4554444 445556667753 434322 22355788999999888876543 332 5788887665544443
No 476
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=71.73 E-value=67 Score=27.88 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCC
Q psy8190 101 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS 179 (348)
Q Consensus 101 eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~ 179 (348)
+++.+.++.+.+.|.+.|.++|. . ..+.+.+.++++.+|+ .++++.+-+|..+.=. -++|.+.+-
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS-~---gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~------~~aD~~~~~---- 76 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGS-L---GIVESNLDQTVKKIKKITNLPVILFPGNVNGLS------RYADAVFFM---- 76 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc-C---CCCHHHHHHHHHHHHhhcCCCEEEECCCccccC------cCCCEEEEE----
Confidence 56666666777889888877655 2 2366889999999998 5788877666433110 246766642
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCee--eEeEeeecC--------------CCHHHHHHHHHHHHhcCCCCCeeec
Q psy8190 180 PKLYGDIISTRDYENRLNTLKNVRNVGINI--CCGGIIGLS--------------ESRDQRAELIFQLANLNPYPESVPI 243 (348)
Q Consensus 180 ~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i--~~~~i~Glg--------------et~e~~~~~l~~l~~l~~~~~~i~~ 243 (348)
.+++.-++..-...-.++.-.+++.|..+ ...++++.| .++|+..........++ .+.+.+
T Consensus 77 -sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G--~~~i~L 153 (205)
T TIGR01769 77 -SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFG--MKWVYL 153 (205)
T ss_pred -EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 12221111111112223333347778753 355555543 24555555555555444 333332
Q ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCcceeeeC
Q psy8190 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 244 ~~l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
.-..|. . .+.+ ..++...|... +..+.+..|-.+ .+.....+.+||+.++.|
T Consensus 154 ---e~~sGa--~--~~v~----~e~i~~Vk~~~-~~Pv~vGGGIrs--~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 154 ---EAGSGA--S--YPVN----PETISLVKKAS-GIPLIVGGGIRS--PEIAYEIVLAGADAIVTG 205 (205)
T ss_pred ---EcCCCC--C--CCCC----HHHHHHHHHhh-CCCEEEeCCCCC--HHHHHHHHHcCCCEEEeC
Confidence 111222 1 1222 23444444433 333444443212 333444567899988654
No 477
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=71.67 E-value=82 Score=28.87 Aligned_cols=188 Identities=10% Similarity=0.060 Sum_probs=105.6
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh-cCcEEEEecC-CCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG-MLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~-~~~~i~~~~g-~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.+.+.+...++.+.+.+..-|.-.+-+ .......+.+..+++.+.+ ..+++.++.. ..+.+.+..-.++|+++|=+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~-~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMi- 103 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPG-TFSYAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMI- 103 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcc-HHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEe-
Confidence 456777777777777666554332221 1223456777887776664 5788888887 45779999999999997654
Q ss_pred CCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeec-CC----C----HHHHHHHHHHHHhcCCCCCeeecc
Q psy8190 176 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGL-SE----S----RDQRAELIFQLANLNPYPESVPIN 244 (348)
Q Consensus 176 ~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Gl-ge----t----~e~~~~~l~~l~~l~~~~~~i~~~ 244 (348)
+.|..-|+ .+.+...+.++.+|..|+.|- .+-|-|- ++ + .-+-.+..+|+.+.+ +|.+-+.
T Consensus 104 -DgS~lp~e-----eNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tg--vD~LAva 175 (284)
T PRK12737 104 -DGSHLSFE-----ENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTG--IDSLAVA 175 (284)
T ss_pred -cCCCCCHH-----HHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhC--CCEEeec
Confidence 33211111 245677788999999998664 5545444 21 1 113356667777777 7765443
Q ss_pred cccccCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy8190 245 NLVQIKGTPLYG---SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 245 ~l~P~~gT~l~~---~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
. ||.-.. .|.++.+.+.++ +...+ ..+-+-+| ..+..+.-..+...|++-+
T Consensus 176 i-----Gt~HG~y~~~p~Ld~~~L~~I----~~~~~-iPLVlHGg-SG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 176 I-----GTAHGLYKGEPKLDFERLAEI----REKVS-IPLVLHGA-SGVPDEDVKKAISLGICKV 229 (284)
T ss_pred c-----CccccccCCCCcCCHHHHHHH----HHHhC-CCEEEeCC-CCCCHHHHHHHHHCCCeEE
Confidence 2 332111 123444433333 22222 11211111 1233445566788998887
No 478
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=71.59 E-value=25 Score=32.39 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
+++.++.+.|++.|.+- +. +++.+.++++.++. .+.+.+ .|.++.+.+..+.+.|+|.++.|.=|
T Consensus 219 eea~ea~~~gaDiI~LD----n~---s~e~~~~av~~~~~-~~~iea-SGGI~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 219 DELDQALKAGADIIMLD----NF---TTEQMREAVKRTNG-RALLEV-SGNVTLETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHHcCCCEEEeC----CC---ChHHHHHHHHhhcC-CeEEEE-ECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 34445556777777652 22 34778888876654 334433 46699999999999999999987544
No 479
>PLN00196 alpha-amylase; Provisional
Probab=71.49 E-value=10 Score=36.89 Aligned_cols=30 Identities=7% Similarity=0.149 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHcCCeeeEeEeeec-CC
Q psy8190 190 RDYENRLNTLKNVRNVGINICCGGIIGL-SE 219 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-ge 219 (348)
.+.++..+.++.+|+.|++|..++++.+ +.
T Consensus 89 Gt~~elk~Lv~~aH~~GIkVilDvV~NH~~~ 119 (428)
T PLN00196 89 GNEAQLKSLIEAFHGKGVQVIADIVINHRTA 119 (428)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECccCccc
Confidence 4889999999999999999999999999 63
No 480
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.48 E-value=28 Score=30.81 Aligned_cols=72 Identities=7% Similarity=0.082 Sum_probs=48.3
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCC--CCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeecc
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 175 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~--~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g 175 (348)
.++.+++ +.+.+.|+.+|.++.-.. +....+.+.+.++.+. .++++.+..|..+.+.++.+.+.|++++-+|
T Consensus 148 ~~~~~~~---~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 148 LNLFSFV---RQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCHHHHH---HHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 3455555 455677888877655311 1223344444444332 4678888999999999999999999998875
No 481
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=71.43 E-value=87 Score=29.03 Aligned_cols=197 Identities=14% Similarity=0.075 Sum_probs=97.3
Q ss_pred cHHHHHHHHHHHHhc--CcEEEEecCCCCH----HHHHHHHHhC-CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHH
Q psy8190 131 DLDNIENMICEVKKI--GLETCLTLGMLNE----NQAYRLKKVG-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNV 202 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~--~~~i~~~~g~l~~----e~l~~Lk~aG-~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~ 202 (348)
..+.+.+.++.+++. +..+.++..-.+. +.++.+.++| +|.+.+++-. .-.-...+ +.+.+...+.++.+
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~--g~d~~~~~~i~~~v 152 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQI--AYDFETTEQILEEV 152 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCcccc--ccCHHHHHHHHHHH
Confidence 456666666666653 3555555322222 3455555677 8998888765 21111111 44677777778877
Q ss_pred HHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeee-cccc----c--ccCCCCCC-------CC-CCCCHHHHH
Q psy8190 203 RNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVP-INNL----V--QIKGTPLY-------GS-SILDPLEFI 266 (348)
Q Consensus 203 ~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~-~~~l----~--P~~gT~l~-------~~-~~~~~~~~~ 266 (348)
++. ..++.+-+- ..-+..++.+....+.+.+ .+.+. ++.+ . +..+++.- .. .++--.-.+
T Consensus 153 ~~~~~~Pv~vKls--p~~~~~~~a~~~~~~~~~g--~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al 228 (310)
T PRK02506 153 FTYFTKPLGVKLP--PYFDIVHFDQAAAIFNKFP--LAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTAL 228 (310)
T ss_pred HHhcCCccEEecC--CCCCHHHHHHHHHHhCcCc--eEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHH
Confidence 764 233322211 1224455555554444444 33332 2211 1 11122221 11 122222344
Q ss_pred HHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeCCeeccCCCCCc-----hHHHHHHHHcCCCchh
Q psy8190 267 RTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT-----NDDSKLLKKLGINTRN 336 (348)
Q Consensus 267 ~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~~~~~~~~g~~~-----~~~~~~i~~~G~~p~~ 336 (348)
+++...+..++ +..|-..+|-.+ .+.....+.+||+.+..+.-+ ...|+.. +++.+++++.||.-+.
T Consensus 229 ~~v~~~~~~~~~~ipIig~GGI~s--~~da~e~i~aGA~~Vqv~ta~-~~~gp~~~~~i~~~L~~~l~~~g~~si~ 301 (310)
T PRK02506 229 ANVRAFYQRLNPSIQIIGTGGVKT--GRDAFEHILCGASMVQVGTAL-HKEGPAVFERLTKELKAIMAEKGYQSLE 301 (310)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCC--HHHHHHHHHcCCCHHhhhHHH-HHhChHHHHHHHHHHHHHHHHhCCCCHH
Confidence 55555554453 444444454333 334555789999999544321 1234432 5678888999996443
No 482
>PRK01254 hypothetical protein; Provisional
Probab=71.13 E-value=91 Score=32.22 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEEecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 100 IESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 100 ~eei~~~~~~~~~-~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
...+.+.++.+.+ .|++.|++..| .+..... .-.++++.+.+. .-.+.+-+...+++.|+.|.+-|...+.--.
T Consensus 467 h~~l~eLLrkLr~IpGVKkVrI~Sg--iR~Dl~l-~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~ 543 (707)
T PRK01254 467 HEPTINLYRRARDLKGIKKILIASG--VRYDLAV-EDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFK 543 (707)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEcC--CCccccc-cCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHH
Confidence 3455666666665 48989988877 2222210 012344444332 2234445667788888888776543221111
Q ss_pred CCCHHHHhcc-------------CCCCCHHHHHHHHHHHHHcCCeee
Q psy8190 177 DTSPKLYGDI-------------ISTRDYENRLNTLKNVRNVGINIC 210 (348)
Q Consensus 177 et~~e~l~~i-------------~~~~~~~~~~~~i~~~~~~G~~i~ 210 (348)
+-.+++.+.+ +++-+.++..+.++.+++.|+.+.
T Consensus 544 e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~e 590 (707)
T PRK01254 544 ELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLD 590 (707)
T ss_pred HHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcc
Confidence 1112222221 145689999999999999998643
No 483
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=71.07 E-value=1.1e+02 Score=29.94 Aligned_cols=157 Identities=9% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHh----cCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC-CH
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SP 180 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~----~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et-~~ 180 (348)
.++.+.+.|++.|-+--- ..+.+.+.++++.+++ .+..+.+|- .++.-.+.|.+.|.+|.+. ..
T Consensus 222 ~ve~aL~aGv~~VQLReK-----~ls~~el~~la~~l~~l~~~~gv~LiIND------~~dlAl~~gAdGVHLGQeDL~~ 290 (437)
T PRK12290 222 WIERLLPLGINTVQLRIK-----DPQQADLEQQIIRAIALGREYNAQVFIND------YWQLAIKHQAYGVHLGQEDLEE 290 (437)
T ss_pred HHHHHHhCCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHhCCEEEEEC------HHHHHHHcCCCEEEcChHHcch
Confidence 356677889988877432 2234555555555543 477776663 4777788899999998754 21
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCC
Q psy8190 181 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSI 259 (348)
Q Consensus 181 e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~ 259 (348)
...+.+ . ..+.++|+ -++.+++.+ +.+.+ ++.+.+.++.|.+--|+. .++
T Consensus 291 ~~aR~i----------------l------g~~~iIGvStHs~eEl~~----A~~~g--aDYI~lGPIFpT~TK~~~-~~p 341 (437)
T PRK12290 291 ANLAQL----------------T------DAGIRLGLSTHGYYELLR----IVQIQ--PSYIALGHIFPTTTKQMP-SKP 341 (437)
T ss_pred hhhhhh----------------c------CCCCEEEEecCCHHHHHH----HhhcC--CCEEEECCccCCCCCCCC-CCC
Confidence 111111 0 12467888 888877533 34577 999999999887533322 233
Q ss_pred CCHHHHHHHHHHHHHHCCC---Cceec--cccccccchhhHHHHHHhCccee
Q psy8190 260 LDPLEFIRTIAVARITMPT---SRIRM--SAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 260 ~~~~~~~~~~a~~R~~lp~---~~i~~--s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
...+...++.....- +|. ..+++ =+| +..+.....+.+||+++
T Consensus 342 ~Gl~~L~~~~~l~~~-~~~~~~~~iPVVAIGG---I~~~Ni~~vl~aGa~GV 389 (437)
T PRK12290 342 QGLVRLALYQKLIDT-IPYQGQTGFPTVAIGG---IDQSNAEQVWQCGVSSL 389 (437)
T ss_pred CCHHHHHHHHHHhhh-ccccccCCCCEEEECC---cCHHHHHHHHHcCCCEE
Confidence 444433333222211 110 11221 122 22333445788999999
No 484
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=70.97 E-value=26 Score=32.57 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=37.4
Q ss_pred CCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCC-CCHHHH-HHHHHhCCCeeeccCCC
Q psy8190 114 GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-LNENQA-YRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 114 G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~-l~~e~l-~~Lk~aG~~~i~~g~et 178 (348)
++-.|-+.|. +.. .+...+..+.+..++.++.++++.|. ...+.+ +.+...|.+||.+|+..
T Consensus 164 ~vvG~dl~g~-E~~--~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~~RIgHG~~~ 227 (331)
T PF00962_consen 164 GVVGFDLAGD-EDG--GPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGADRIGHGVRL 227 (331)
T ss_dssp TEEEEEEESS-TTS--TTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-SEEEE-GGG
T ss_pred eEEEEEecCC-ccc--CchHHHHHHHhhhcccceeecceecccCCcccccchhhhccceeecchhhh
Confidence 4555666665 221 22234777888888888999888884 344443 44444599999998865
No 485
>PRK09358 adenosine deaminase; Provisional
Probab=70.92 E-value=67 Score=30.00 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHhcCcEEEEecCCC-CH-HHHHHHHHhCCCeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCe
Q psy8190 131 DLDNIENMICEVKKIGLETCLTLGML-NE-NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208 (348)
Q Consensus 131 ~~~~~~~l~~~i~~~~~~i~~~~g~l-~~-e~l~~Lk~aG~~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~ 208 (348)
+.+.+.++++..++.|+.++++.|.. .. +....+...|.+++.+++... +--+.++.+++.|+.
T Consensus 180 ~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~~l~--------------~~~~~~~~l~~~gi~ 245 (340)
T PRK09358 180 PPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGVRAI--------------EDPALMARLADRRIP 245 (340)
T ss_pred CHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhhhhc--------------cCHHHHHHHHHcCCe
Confidence 34555556666665566666555532 22 223333335666555544331 012346777778875
Q ss_pred e--e--EeEeeec
Q psy8190 209 I--C--CGGIIGL 217 (348)
Q Consensus 209 i--~--~~~i~Gl 217 (348)
+ | +.+..|.
T Consensus 246 v~~cP~Sn~~l~~ 258 (340)
T PRK09358 246 LEVCPTSNVQTGA 258 (340)
T ss_pred EEECCCccccccc
Confidence 3 3 3455555
No 486
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=70.78 E-value=72 Score=27.86 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCC--HHHHHHHHHhCCCeeeccCCCCHHHH
Q psy8190 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN--ENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 106 ~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~--~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
+++.+.+.|..-+.+.|. .+.+.+...++..++.+..+.+..-... .+..+.|+++|++.+.+-..-+.+.
T Consensus 72 e~~ma~~aGAd~~tV~g~------A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~- 144 (217)
T COG0269 72 EARMAFEAGADWVTVLGA------ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQA- 144 (217)
T ss_pred HHHHHHHcCCCEEEEEec------CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhh-
Q ss_pred hccCCCCCH-HHHHHHHHHHHHcCCeeeEe
Q psy8190 184 GDIISTRDY-ENRLNTLKNVRNVGINICCG 212 (348)
Q Consensus 184 ~~i~~~~~~-~~~~~~i~~~~~~G~~i~~~ 212 (348)
.+.++ .+.++.++.+.+.|+.+.+.
T Consensus 145 ----~G~~~~~~~l~~ik~~~~~g~~vAVa 170 (217)
T COG0269 145 ----AGKSWGEDDLEKIKKLSDLGAKVAVA 170 (217)
T ss_pred ----cCCCccHHHHHHHHHhhccCceEEEe
No 487
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=70.63 E-value=56 Score=32.56 Aligned_cols=65 Identities=25% Similarity=0.187 Sum_probs=41.2
Q ss_pred cCHHHHHHHHH----HHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcE-EE--EecCCCCHHHHHHH
Q psy8190 98 LSIESVITAAQ----KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TC--LTLGMLNENQAYRL 164 (348)
Q Consensus 98 ~~~eei~~~~~----~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~-i~--~~~g~l~~e~l~~L 164 (348)
++.+++++.+. .+++.|...+.|+.- +.+..+.+++.++++.+.+.+.. ++ =+.|.++++.+..+
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E--Da~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~l 273 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGCE--DGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGEL 273 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeccc--cccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 56677665554 455677765555432 33456788999999988876543 33 35788887654433
No 488
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=70.60 E-value=19 Score=29.08 Aligned_cols=109 Identities=8% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHhCCCeeeccCCCCHHHH
Q psy8190 107 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG---MLNENQAYRLKKVGLDYYNHNLDTSPKLY 183 (348)
Q Consensus 107 ~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g---~l~~e~l~~Lk~aG~~~i~~g~et~~e~l 183 (348)
+..+...|++.++++.. .+.+.+.+.+...+..-+-++...+ ..-++.++.|++.|...+.+.+.....+
T Consensus 24 ~~~lr~~G~eVi~LG~~------vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~- 96 (137)
T PRK02261 24 DRALTEAGFEVINLGVM------TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVV- 96 (137)
T ss_pred HHHHHHCCCEEEECCCC------CCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCC-
Q ss_pred hccCCCCCHHHHHHHHHHHHHcCCeeeEeEeeecCCCHHHHHHHHHHHHh
Q psy8190 184 GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 233 (348)
Q Consensus 184 ~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i~Glget~e~~~~~l~~l~~ 233 (348)
...++.+..+.+++.| .+-+|+-+.+.+++++.++...+
T Consensus 97 -------~~~~~~~~~~~l~~~G----~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 97 -------GKHDFEEVEKKFKEMG----FDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred -------CccChHHHHHHHHHcC----CCEEECcCCCHHHHHHHHHHHhc
No 489
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.56 E-value=79 Score=28.88 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHH-cCCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeecccccccCCCCCCCCCCCCHHHHHH
Q psy8190 190 RDYENRLNTLKNVRN-VGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 267 (348)
Q Consensus 190 ~~~~~~~~~i~~~~~-~G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~l~P~~gT~l~~~~~~~~~~~~~ 267 (348)
...+.+++.++.+++ .+.++ ++-+ |.+.+++.+.++.+.+.+ .+.+-++..-|..... ...-.-+++...+
T Consensus 72 ~g~~~~~~~~~~~~~~~~~p~----ivsi~g~~~~~~~~~a~~~~~~G--~d~iElN~~cP~~~~~-g~~~~~~~~~~~e 144 (296)
T cd04740 72 PGVEAFLEELLPWLREFGTPV----IASIAGSTVEEFVEVAEKLADAG--ADAIELNISCPNVKGG-GMAFGTDPEAVAE 144 (296)
T ss_pred cCHHHHHHHHHHHhhcCCCcE----EEEEecCCHHHHHHHHHHHHHcC--CCEEEEECCCCCCCCC-cccccCCHHHHHH
Confidence 456777777776654 34443 3444 788999999999999887 8888888766642110 1111235677778
Q ss_pred HHHHHHHHCCC-CceeccccccccchhhHHHHHHhCcceee
Q psy8190 268 TIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSIF 307 (348)
Q Consensus 268 ~~a~~R~~lp~-~~i~~s~g~~~l~~~~~~~~l~~GAn~~~ 307 (348)
++...|....- ..+++++.... ..+....+..+||+.+.
T Consensus 145 iv~~vr~~~~~Pv~vKl~~~~~~-~~~~a~~~~~~G~d~i~ 184 (296)
T cd04740 145 IVKAVKKATDVPVIVKLTPNVTD-IVEIARAAEEAGADGLT 184 (296)
T ss_pred HHHHHHhccCCCEEEEeCCCchh-HHHHHHHHHHcCCCEEE
Confidence 88888876522 23344432211 12344556779999873
No 490
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=70.49 E-value=85 Score=28.54 Aligned_cols=109 Identities=11% Similarity=0.038 Sum_probs=68.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcccHHHHHHHHHHHHhcCcEEEEecCCC-CH---HHHHHHHHhCCCe
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAA-WRELKDRDLDNIENMICEVKKIGLETCLTLGML-NE---NQAYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg-~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l-~~---e~l~~Lk~aG~~~ 171 (348)
..+.+.+.+.++.+.+.|++.+++.|. |+.+ ..+.+.-.++++...+..-.+.+..|.. +. +..+..+++|++.
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~-~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGP-SLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYA 94 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcc-cCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCE
Confidence 478899999999999999999988665 4443 4566777777776654211244555533 33 3455666679998
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeEe
Q psy8190 172 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 214 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~i 214 (348)
+.+-.- .| .+..+.+...+-++.+.+ ++++..+-+
T Consensus 95 v~v~~P----~y---~~~~~~~~i~~yf~~v~~-~lpv~iYn~ 129 (279)
T cd00953 95 IASLPP----YY---FPGIPEEWLIKYFTDISS-PYPTFIYNY 129 (279)
T ss_pred EEEeCC----cC---CCCCCHHHHHHHHHHHHh-cCCEEEEeC
Confidence 875321 11 111245666676777666 666654433
No 491
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=70.34 E-value=33 Score=32.84 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCC------C-cccHHHHHHHHHHHHh-cCcEEEEecCCCCHHHHHHHHHhC-
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWREL------K-DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG- 168 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~------~-~~~~~~~~~l~~~i~~-~~~~i~~~~g~l~~e~l~~Lk~aG- 168 (348)
.++++.++.++.+.+.|+..+.+++|.... . ......+..+++.+++ .++++.++.+..+.+.++.+.+.|
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~ 328 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGI 328 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 467888888888888899999998773210 0 0112234566777776 477888888888999888777765
Q ss_pred CCeeeccCCC--CHHHHhccCCCC
Q psy8190 169 LDYYNHNLDT--SPKLYGDIISTR 190 (348)
Q Consensus 169 ~~~i~~g~et--~~e~l~~i~~~~ 190 (348)
+|-|.++=.. +|++.+++..+.
T Consensus 329 ~D~V~~gR~~ladP~l~~k~~~g~ 352 (382)
T cd02931 329 ADMISLGRPLLADPDVVNKIRRGR 352 (382)
T ss_pred CCeeeechHhHhCccHHHHHHcCC
Confidence 8999887433 577777776554
No 492
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=70.33 E-value=74 Score=27.76 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=102.4
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEe----cCCCCH----HHHHHHHHhCC
Q psy8190 98 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT----LGMLNE----NQAYRLKKVGL 169 (348)
Q Consensus 98 ~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~----~g~l~~----e~l~~Lk~aG~ 169 (348)
.+.++|.+.++++.++++..+++. | .++...-+.++..++.+++- .|..+. .+.+...+.|.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~-----p-----~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GA 84 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN-----P-----SYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGA 84 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC-----H-----HHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 688999999999999999999872 2 12222223344445666543 343332 34555666799
Q ss_pred CeeeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHc--CCeeeEeEeeec-CCCHHHHHHHHHHHHhcCCCCCeeeccc-
Q psy8190 170 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINN- 245 (348)
Q Consensus 170 ~~i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~--G~~i~~~~i~Gl-get~e~~~~~l~~l~~l~~~~~~i~~~~- 245 (348)
+-+.+-+.- ..+ ....++...+-+..+.+. |..+.. |+-. .-+.+++....+...+.+ .+.+..+.
T Consensus 85 dEiDvv~n~-----g~l-~~g~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaG--ADfvKTsTG 154 (211)
T TIGR00126 85 DEVDMVINI-----GAL-KDGNEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAG--ADFVKTSTG 154 (211)
T ss_pred CEEEeecch-----Hhh-hCCcHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhC--CCEEEeCCC
Confidence 988764421 111 134556666666666553 554444 5544 356678888888888888 88876542
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHHHhCccee
Q psy8190 246 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 306 (348)
Q Consensus 246 l~P~~gT~l~~~~~~~~~~~~~~~a~~R~~lp~~~i~~s~g~~~l~~~~~~~~l~~GAn~~ 306 (348)
|.| ...++++...|....+ +...|.+++|-.++ +.....+.+||+.+
T Consensus 155 f~~---------~gat~~dv~~m~~~v~---~~v~IKaaGGirt~--~~a~~~i~aGa~ri 201 (211)
T TIGR00126 155 FGA---------GGATVEDVRLMRNTVG---DTIGVKASGGVRTA--EDAIAMIEAGASRI 201 (211)
T ss_pred CCC---------CCCCHHHHHHHHHHhc---cCCeEEEeCCCCCH--HHHHHHHHHhhHHh
Confidence 221 2244444433333333 24567777764432 33445678899887
No 493
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=70.04 E-value=97 Score=29.03 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCC--CEEEEeccCCCCCcccHHHHHHHHHHHHhc--CcEEEE-ecCCCCHHHHHHHHHhCCCeeeccC
Q psy8190 102 SVITAAQKAKSDGA--TRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-TLGMLNENQAYRLKKVGLDYYNHNL 176 (348)
Q Consensus 102 ei~~~~~~~~~~G~--~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~--~~~i~~-~~g~l~~e~l~~Lk~aG~~~i~~g~ 176 (348)
+-.+++..+.+.|+ .-+.+... + ...+.+.++++.+++. ++.+.+ + ..+.+..+.|.++|+|.+-+|.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a--~---gh~~~~~e~I~~ir~~~p~~~vi~g~--V~t~e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIA--H---GHSDSVINMIQHIKKHLPETFVIAGN--VGTPEAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECC--C---CchHHHHHHHHHHHhhCCCCeEEEEe--cCCHHHHHHHHHcCcCEEEECC
Confidence 33456677777755 77777443 2 2347788999999974 344443 3 4489999999999999988765
Q ss_pred CC-CHHHHhccCCCCCHHHHHHHHHHHHHc-CCeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccc
Q psy8190 177 DT-SPKLYGDIISTRDYENRLNTLKNVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 245 (348)
Q Consensus 177 et-~~e~l~~i~~~~~~~~~~~~i~~~~~~-G~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~ 245 (348)
-. +...-+.....+..+.-+.++..+.+. .+++.++ |=-.+..|+.+.+. ++ .+.+.+..
T Consensus 170 ~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAd---GGI~~~~Di~KaLa----~G--A~aV~vG~ 231 (326)
T PRK05458 170 GPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIAD---GGIRTHGDIAKSIR----FG--ATMVMIGS 231 (326)
T ss_pred CCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEe---CCCCCHHHHHHHHH----hC--CCEEEech
Confidence 44 221111111112111123344444442 3332111 11357777776654 45 56655543
No 494
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=70.02 E-value=38 Score=30.38 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHHHH-hCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCC
Q psy8190 98 LSIESVITAAQKAK-SDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN 157 (348)
Q Consensus 98 ~~~eei~~~~~~~~-~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~ 157 (348)
-++++.++.+-.+. +.|..-|.+-|| +++.++++.+.+.+++++.+.|+.+
T Consensus 90 ~s~~~a~~nA~r~~ke~gA~aVKlEGG---------~~~~~~i~~L~~~gIPV~gHiGLtP 141 (268)
T COG0413 90 VSPEQALKNAARLMKEAGADAVKLEGG---------EEMAETIKRLTERGIPVMGHIGLTP 141 (268)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCC---------HHHHHHHHHHHHcCCceEEEecCCh
Confidence 46666666654444 478888888776 4678888888888888888877544
No 495
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.01 E-value=14 Score=37.17 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=32.3
Q ss_pred ccCCC-CCHHHHHHHHHHHHHcCCeeeEeEeeec-CCCHHHHHH
Q psy8190 185 DIIST-RDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAE 226 (348)
Q Consensus 185 ~i~~~-~~~~~~~~~i~~~~~~G~~i~~~~i~Gl-get~e~~~~ 226 (348)
.+.+. .+.++..+.++.||+.|+.|..++++.+ +...+-+.+
T Consensus 67 ~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~ 110 (539)
T TIGR02456 67 AILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQE 110 (539)
T ss_pred ccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHH
Confidence 34443 3778999999999999999999999999 655443433
No 496
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.89 E-value=31 Score=31.66 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcccHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHhCCCeeeccCCC
Q psy8190 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 178 (348)
Q Consensus 105 ~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et 178 (348)
+++.++.+.|++.|.+- + .+++.+.++++.++. .+.+. -.|.++.+.+..+.+.|+|.++.|.=+
T Consensus 208 eea~~a~~agaDiImLD----n---mspe~l~~av~~~~~-~~~le-aSGGI~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 208 AAAEEAAAAGADIIMLD----N---MSLEQIEQAITLIAG-RSRIE-CSGNIDMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred HHHHHHHHcCCCEEEEC----C---CCHHHHHHHHHHhcC-ceEEE-EECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 33444556788777662 1 245778888876664 23333 356799999999999999999987644
No 497
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.88 E-value=44 Score=28.83 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhc-CcEEEEecCCCCHHHHHHHHHhCCCeeeccCCCCHHHHhccC-CCCCHHHHHHHHHHHHHcCCeeeE
Q psy8190 134 NIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRNVGINICC 211 (348)
Q Consensus 134 ~~~~l~~~i~~~-~~~i~~~~g~l~~e~l~~Lk~aG~~~i~~g~et~~e~l~~i~-~~~~~~~~~~~i~~~~~~G~~i~~ 211 (348)
.+.++++-..+. +..+....-..+-+.+..+...|=.++..++-+ +++-+..- +.-+.++++++++.+.++|++|+.
T Consensus 11 ~l~~~I~ff~~~~~~~lef~TK~~nv~~Ll~l~~~~~t~~rfSlnp-~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~ 89 (199)
T TIGR00620 11 TLKRAIEHFGQSDFGKLRFVTKFHHVDHLLDAKHNGKTRFRFSINA-DYVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGF 89 (199)
T ss_pred hHHHHHHHHccCCCcEEEEEEcccchhhHhcCCCCCCEEEEEEeCH-HHHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 344555555442 455555555666666777777776666655533 34444443 356899999999999999998764
Q ss_pred eE--eeecCCCHHHHHHHHHHHH-hcC
Q psy8190 212 GG--IIGLSESRDQRAELIFQLA-NLN 235 (348)
Q Consensus 212 ~~--i~Glget~e~~~~~l~~l~-~l~ 235 (348)
.+ |+=...+.++..+.++.+. .+.
T Consensus 90 ~~~PIi~~egW~e~Y~~l~~~l~~~l~ 116 (199)
T TIGR00620 90 IIAPIYIHEGWKEGYRNLLEKLDEALP 116 (199)
T ss_pred EeeceEeeCChHHHHHHHHHHHHHhCC
Confidence 43 4433445566667776665 444
No 498
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=69.75 E-value=91 Score=28.60 Aligned_cols=137 Identities=9% Similarity=0.088 Sum_probs=85.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-ccHHHHHHHHHHHHh-cC--cEEEEecC-CCCHHHHHHHHHhCCCe
Q psy8190 97 ILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IG--LETCLTLG-MLNENQAYRLKKVGLDY 171 (348)
Q Consensus 97 ~~~~eei~~~~~~~~~~G~~~i~l~gg~~~~~~-~~~~~~~~l~~~i~~-~~--~~i~~~~g-~l~~e~l~~Lk~aG~~~ 171 (348)
..+.+.+...++.+.+.+..-|.-.+.+ .... .+.+.+..+++.+.+ .. +++.++.. .-+.+.+...-++|+++
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEG-AARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcc-hhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3456777777776666665554322221 2222 356778888887765 33 68888877 45789999999999998
Q ss_pred eeccCCCCHHHHhccCCCCCHHHHHHHHHHHHHcCCeee--EeEeeec-CC----C--HHHHHHHHHHHHhcCCCCCeee
Q psy8190 172 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGL-SE----S--RDQRAELIFQLANLNPYPESVP 242 (348)
Q Consensus 172 i~~g~et~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~--~~~i~Gl-ge----t--~e~~~~~l~~l~~l~~~~~~i~ 242 (348)
|=+ +.|..-|+ .+.+...+.++.+|..|+.+- .+-+-|- +. . .-+-.+..+|+++.+ +|.+-
T Consensus 104 VM~--DgS~lp~e-----eNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tg--vD~LA 174 (285)
T PRK07709 104 VMI--DASHHPFE-----ENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATG--IDCLA 174 (285)
T ss_pred EEE--eCCCCCHH-----HHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhC--CCEEE
Confidence 765 33211111 244567788899999998664 4544343 21 0 124456677788887 77654
Q ss_pred c
Q psy8190 243 I 243 (348)
Q Consensus 243 ~ 243 (348)
+
T Consensus 175 v 175 (285)
T PRK07709 175 P 175 (285)
T ss_pred E
Confidence 4
No 499
>PRK15447 putative protease; Provisional
Probab=69.74 E-value=12 Score=34.68 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCeeeccCCC-CHHHHhccCCCCCHHHHHHHHHHHHHcCCeeeEeE
Q psy8190 158 ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG 213 (348)
Q Consensus 158 ~e~l~~Lk~aG~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~~~~~~G~~i~~~~ 213 (348)
++.+..+.+.|+|.|.+|.+. +.+. ..+.+++.++++.+|++|.++...+
T Consensus 18 ~~~~~~~~~~gaDaVY~g~~~~~~R~------~f~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 18 RDFYQRAADSPVDIVYLGETVCSKRR------ELKVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred HHHHHHHHcCCCCEEEECCccCCCcc------CCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 467888889999999999765 4332 5789999999999999999876543
No 500
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=69.64 E-value=97 Score=28.90 Aligned_cols=169 Identities=14% Similarity=0.069 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCcEEEEecCCCC--------HHHHHHHHHhC--CCeeeccCCC-CHHHHhccCCCCCHHHHHHHHH
Q psy8190 132 LDNIENMICEVKKIGLETCLTLGMLN--------ENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLK 200 (348)
Q Consensus 132 ~~~~~~l~~~i~~~~~~i~~~~g~l~--------~e~l~~Lk~aG--~~~i~~g~et-~~e~l~~i~~~~~~~~~~~~i~ 200 (348)
.+.+.+.++..+..+..+.++.+.-+ +|..+.+++++ ++.+.+++-. ... ..+.....+...+.++
T Consensus 114 ~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~---g~~~~~~~~~~~~iv~ 190 (327)
T cd04738 114 ADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP---GLRDLQGKEALRELLT 190 (327)
T ss_pred HHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC---ccccccCHHHHHHHHH
Confidence 34444444433333556666654332 45566666655 8888888744 211 1112345666666666
Q ss_pred HHHHc-C-----CeeeEeEeeecCCCHHHHHHHHHHHHhcCCCCCeeeccccccc-CCC---CCCC----CC-CCCHHHH
Q psy8190 201 NVRNV-G-----INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI-KGT---PLYG----SS-ILDPLEF 265 (348)
Q Consensus 201 ~~~~~-G-----~~i~~~~i~Glget~e~~~~~l~~l~~l~~~~~~i~~~~l~P~-~gT---~l~~----~~-~~~~~~~ 265 (348)
.+++. + +++.+-+ ..+.+.+++.+..+.+.+.+ .+.+.+..-.+. .++ +... .. +......
T Consensus 191 av~~~~~~~~~~~Pv~vKl--~~~~~~~~~~~ia~~l~~aG--ad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~ 266 (327)
T cd04738 191 AVKEERNKLGKKVPLLVKI--APDLSDEELEDIADVALEHG--VDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERS 266 (327)
T ss_pred HHHHHHhhcccCCCeEEEe--CCCCCHHHHHHHHHHHHHcC--CcEEEEECCcccccccccccccCCCCccCChhhhHHH
Confidence 66653 2 4444333 23456677888888888887 788775432211 110 1111 11 1111234
Q ss_pred HHHHHHHHHHCC-CCceeccccccccchhhHHHHHHhCcceeeeC
Q psy8190 266 IRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 309 (348)
Q Consensus 266 ~~~~a~~R~~lp-~~~i~~s~g~~~l~~~~~~~~l~~GAn~~~~~ 309 (348)
++.+...|..++ +..|-.++|-.+ .+.....+.+||+.++.+
T Consensus 267 l~~v~~l~~~~~~~ipIi~~GGI~t--~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGGISS--GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCC--HHHHHHHHHcCCCHHhcc
Confidence 566666666665 334444444332 333445667999999665
Done!