RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8190
         (348 letters)



>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId:
           562]}
          Length = 312

 Score =  260 bits (665), Expect = 3e-86
 Identities = 176/305 (57%), Positives = 231/305 (75%)

Query: 29  WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
           W L +V  LF  P  DLLF AQ+VHR++FD  +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 4   WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 63

Query: 89  NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
            T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+   +RD+  +E M+  VK +GLE
Sbjct: 64  KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 123

Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
            C+TLG L+E+QA RL   GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI 
Sbjct: 124 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 183

Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
           +C GGI+GL E+   RA L+ QLANL   PESVPIN LV++KGTPL  +  +D  +FIRT
Sbjct: 184 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 243

Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
           IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +
Sbjct: 244 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 303

Query: 329 KLGIN 333
           KLG+N
Sbjct: 304 KLGLN 308


>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
           {Haemophilus influenzae [TaxId: 727]}
          Length = 174

 Score = 33.6 bits (76), Expect = 0.018
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 11/134 (8%)

Query: 106 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLK 165
             QK+   G        + R     D + ++  I + +KI +  C         Q  R  
Sbjct: 22  TIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACE--------QCGRNI 73

Query: 166 KVGLDYYNHNLDTSPKLYGD--IISTRDYENRLNTLKNVRNVGINICCGGIIGLSES-RD 222
              +       D   +  G   +         + TL  +   G+ +  G   GLS     
Sbjct: 74  VPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIA 133

Query: 223 QRAELIFQLANLNP 236
           Q  +  F    L  
Sbjct: 134 QTEQQGFTEILLGK 147


>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 536

 Score = 31.6 bits (72), Expect = 0.15
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 302 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 333
              SIF+ D      N +  D ++LL  +GIN
Sbjct: 20  AGRSIFFVDDQFVKQNQRIKDYARLLASVGIN 51


>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
           {Pseudomonas cellulosa [TaxId: 155077]}
          Length = 561

 Score = 30.9 bits (70), Expect = 0.26
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 302 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 333
              S++    L      +  D +++   LGIN
Sbjct: 21  AGLSLWDWGSLPNYLAPRYTDYARINASLGIN 52


>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
           {Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 253

 Score = 25.6 bits (56), Expect = 8.7
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 123 AWRELKDRDL--DNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 180
              +L+ RD     + N+   VK+ G      L MLN   +YRL   G +++        
Sbjct: 20  EVLKLERRDPQYRAVCNV---VKRHGETVGSRLAMLNALISYRLTGKGEEHW-------- 68

Query: 181 KLYGDIISTRDYENRLNTLKN 201
           + +G   S  +  +       
Sbjct: 69  EYFGKYFSQLEVIDLCRDFLK 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,207,529
Number of extensions: 54952
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 12
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)