BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8191
(257 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399017609|ref|ZP_10719799.1| pseudouridine synthase, RluA family [Herbaspirillum sp. CF444]
gi|398102834|gb|EJL93010.1| pseudouridine synthase, RluA family [Herbaspirillum sp. CF444]
Length = 352
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 129/254 (50%), Positives = 184/254 (72%), Gaps = 1/254 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G E++II P+ + + + LDI++ED I+++NK AGLVVHPA GN SGTL
Sbjct: 90 MTVLGDEVVIITPQAAPEDTAFQPEPMALDIVHEDKAILVVNKPAGLVVHPAAGNWSGTL 149
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL +P L VPRAGIVHRLDK++SGLMVVAK++ + LV QL+ V+R+YLA+V
Sbjct: 150 LNGLLHHFPALGGVPRAGIVHRLDKDTSGLMVVAKTLAAQTDLVRQLQARTVKRRYLALV 209
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG P+L+G I+ A+ R+P +RIKM VS++ +AKPA+T+Y+R+A G ++ + +SL+ C L+
Sbjct: 210 WGTPQLSGTIDGAMARHPRDRIKMAVSESMSAKPAITHYQRVAVGALDGRAVSLMHCQLE 269
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ LG +VGD LYGK + F RQAL A++LGL+HP + +W +
Sbjct: 270 TGRTHQIRVHMQSLGFALVGDALYGKTHLMPF-FPRQALQAWRLGLVHPTSGKSCQWEVK 328
Query: 241 LPDDISKLITFSGI 254
LP+D ++L+ +GI
Sbjct: 329 LPEDFTELLGRAGI 342
>gi|340786962|ref|YP_004752427.1| ribosomal large subunit pseudouridine synthase D [Collimonas
fungivorans Ter331]
gi|340552229|gb|AEK61604.1| Ribosomal large subunit pseudouridine synthase D [Collimonas
fungivorans Ter331]
Length = 350
Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/255 (50%), Positives = 181/255 (70%), Gaps = 1/255 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M G E +++ P+ + + LD++YED II++NK AGLVVHPA GN SGTL
Sbjct: 94 MTTYGDETVVVLPQPAPDEKAFTPEDMALDVVYEDAAIIVINKPAGLVVHPAAGNWSGTL 153
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL +P L VPRAGIVHRLDK++SGLMVVAK++++ LV QL+ V+R+YLA+V
Sbjct: 154 LNGLLFRWPALAGVPRAGIVHRLDKDTSGLMVVAKTLEAQTDLVRQLQARTVKRQYLALV 213
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG P+LNG +++ + R+P +RIKM VS++ AKPA+T+Y+RLATG++ ++ +SL+ C L+
Sbjct: 214 WGTPQLNGTVDSPMARHPRDRIKMAVSESLIAKPAITHYQRLATGLLERRPVSLMSCRLE 273
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ LG +VGD LYGK++ F RQAL A +LGLIHP + +W
Sbjct: 274 TGRTHQIRVHMQSLGFSLVGDALYGKQHLMP-AFPRQALQASRLGLIHPSSGKACEWYAP 332
Query: 241 LPDDISKLITFSGIK 255
LP+D + L+ +G+
Sbjct: 333 LPEDFAALLVRAGMS 347
>gi|409406732|ref|ZP_11255194.1| ribosomal large subunit pseudouridine synthase D [Herbaspirillum
sp. GW103]
gi|386435281|gb|EIJ48106.1| ribosomal large subunit pseudouridine synthase D [Herbaspirillum
sp. GW103]
Length = 372
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 178/249 (71%), Gaps = 1/249 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G EL+ + P+ + + LDI++ED IIILNK AGLVVHPA GN SGTL
Sbjct: 92 MTMLGDELVEVAPQSVPADQPYAPEAMDLDILHEDKSIIILNKPAGLVVHPAAGNWSGTL 151
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L NVPRAGIVHRLDK +SGLMVVAK++ + LV QL+ ++R+YLA+V
Sbjct: 152 LNGLLHHCPALANVPRAGIVHRLDKETSGLMVVAKTLAAQTDLVRQLQARSMKRQYLALV 211
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG+P+L+G INA + R+P +RIKM VS++ AKPA+T+Y RLATG I++K +SL+ C L+
Sbjct: 212 WGLPQLSGTINAPMARHPRDRIKMAVSQSMRAKPAVTHYRRLATGEIDRKPVSLVHCRLE 271
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVH+Q LG +VGD LYGK++ + IF RQAL A +LGL+HP + +W
Sbjct: 272 TGRTHQIRVHLQSLGFALVGDTLYGKQH-LAPIFPRQALLAGRLGLVHPTSGKFRQWAAP 330
Query: 241 LPDDISKLI 249
LP DI L+
Sbjct: 331 LPQDIVDLL 339
>gi|134095125|ref|YP_001100200.1| pseudouridine synthase [Herminiimonas arsenicoxydans]
gi|133739028|emb|CAL62076.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Herminiimonas arsenicoxydans]
Length = 318
Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 128/255 (50%), Positives = 183/255 (71%), Gaps = 1/255 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G E ++I P+ + + + L+I YED I++++K AGLVVHPA GN SGTL
Sbjct: 63 MTVYGDEKVVIYPQPAPEDEAFKPEAMDLNIAYEDAAILVIDKPAGLVVHPAAGNWSGTL 122
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P + VPRAGIVHRLDK++SGLMVVAK++ ++ LV QL+ V+R+YLA+V
Sbjct: 123 LNGLLHYLPAIAGVPRAGIVHRLDKDTSGLMVVAKTLVAHTDLVRQLQARTVKREYLALV 182
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG P ++G ++ +I R+ +R+KM VS+N AKPALT+++RLATG+++ + +SL+ C L+
Sbjct: 183 WGTPNVSGKVDTSIGRHSRDRVKMAVSENLTAKPALTHFQRLATGMLDGRPVSLMMCQLE 242
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ +G +VGD LYGK++ + +F RQALHA +LGL+HP + ++W
Sbjct: 243 TGRTHQIRVHMQSIGFALVGDALYGKQHLTT-VFPRQALHARRLGLVHPVSGAAVEWSSE 301
Query: 241 LPDDISKLITFSGIK 255
LP D + LI SGIK
Sbjct: 302 LPQDFADLIARSGIK 316
>gi|152981261|ref|YP_001353083.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium
sp. Marseille]
gi|151281338|gb|ABR89748.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium
sp. Marseille]
Length = 342
Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 185/255 (72%), Gaps = 1/255 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G E ++I P+ + + + L I++ED E++++NK AGLVVHPA GN SGTL
Sbjct: 87 MTVYGDEKVVIYPQPAPEDEAFKPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTL 146
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P + VPRAGIVHRLDK++SGLMVVAK++ ++ LV QL+ V+R+YLA+V
Sbjct: 147 LNGLLHYLPSISGVPRAGIVHRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALV 206
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG P + G I+A+I R+ +RIKM VS+N AKPA+T+++RLATG+++ + +SL+ C L+
Sbjct: 207 WGTPNITGKIDASIGRHARDRIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLE 266
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ +G +VGD LYGK++ + +F RQALHA +LGLIHP + ++W
Sbjct: 267 TGRTHQIRVHMQSIGFALVGDGLYGKQHLTT-VFPRQALHARRLGLIHPVSGEAVEWSSE 325
Query: 241 LPDDISKLITFSGIK 255
LP D ++LI +GIK
Sbjct: 326 LPQDFAELIARAGIK 340
>gi|415913308|ref|ZP_11553637.1| Pseudouridine synthase, partial [Herbaspirillum frisingense GSF30]
gi|407761968|gb|EKF70916.1| Pseudouridine synthase, partial [Herbaspirillum frisingense GSF30]
Length = 349
Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 133/254 (52%), Positives = 179/254 (70%), Gaps = 1/254 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G EL+ + P+ + + LDI++ED +I+LNK AGLVVHPA GN SGTL
Sbjct: 80 MTMLGDELVEVAPQSAPADQPYAPEAMALDILHEDKYLIVLNKPAGLVVHPAAGNWSGTL 139
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ ++R+YLA+V
Sbjct: 140 LNGLLHHCPALAKVPRAGIVHRLDKETSGLMVVAKTLAAQTDLVRQLQARSMKRQYLALV 199
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG+P+L+G INA + R+P +RIKM VS++ AKPA+T+Y RLATG I++K +SL+ C L+
Sbjct: 200 WGLPQLSGTINAPMARHPRDRIKMAVSQSMRAKPAVTHYRRLATGEIDRKPVSLVHCRLE 259
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVH+Q LG +VGD LYGK + +F RQAL A +LGL+HP + +W
Sbjct: 260 TGRTHQIRVHLQSLGFALVGDALYGKHHLIP-VFPRQALLAGRLGLVHPGSGKFRQWAAP 318
Query: 241 LPDDISKLITFSGI 254
LP+DI L+ +GI
Sbjct: 319 LPEDIVALLQRAGI 332
>gi|329902613|ref|ZP_08273174.1| Ribosomal large subunit pseudouridine synthase D [Oxalobacteraceae
bacterium IMCC9480]
gi|327548721|gb|EGF33364.1| Ribosomal large subunit pseudouridine synthase D [Oxalobacteraceae
bacterium IMCC9480]
Length = 355
Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 126/254 (49%), Positives = 183/254 (72%), Gaps = 1/254 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G E I++ P+ + + L+I+YED II++NK AGLVVHP GN SGTL
Sbjct: 87 MTVYGDEHIVVLPQAAPEDTAFAPEEMALNIVYEDEAIIVVNKPAGLVVHPGSGNWSGTL 146
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL +P LI VPRAGIVHRLDK++SGLMVVAK+++ + LV QL V+R+Y A+V
Sbjct: 147 LNGLLHYWPALIGVPRAGIVHRLDKDTSGLMVVAKTLEVHTDLVRQLAARTVKREYFALV 206
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG P L+G I+A++ R+P +RI+M V ++ +AKPA+T++ER+ +G+++++ +SL+RC L+
Sbjct: 207 WGTPNLSGTIDASMGRHPRDRIRMAVLESMSAKPAITHFERIESGLLDRRPVSLMRCRLE 266
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ +G +VGD LYGK++ + F+RQAL A +LGL+HP ++WR+
Sbjct: 267 TGRTHQIRVHMQSIGFALVGDTLYGKQH-LAPAFHRQALQARRLGLVHPVTGEDVEWRVP 325
Query: 241 LPDDISKLITFSGI 254
L DD + LI + I
Sbjct: 326 LADDFAALIASAEI 339
>gi|395762800|ref|ZP_10443469.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium
lividum PAMC 25724]
Length = 341
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/254 (50%), Positives = 181/254 (71%), Gaps = 1/254 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M G E I+I P+ + + ++L+I++ED II++NK AGLVVHP GN SGTL
Sbjct: 83 MTAYGDEKIVILPQSAPEDEAFKPEAMELNIVHEDEHIIVINKPAGLVVHPGPGNWSGTL 142
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK++SGLMVV K++ + LV QL+ V+R+Y A+V
Sbjct: 143 LNGLLHHCPQLAGVPRAGIVHRLDKDTSGLMVVGKTLAAQTDLVRQLQARTVKREYFALV 202
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG PK+ G I+A+I R+P +R+KM VS+NF AKPA+T+Y + +G ++++ +SL++C L+
Sbjct: 203 WGTPKMAGTIDASIARHPRDRVKMAVSENFTAKPAITHYALIGSGELDRRPVSLMQCRLE 262
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ LG +VGD++YGK++ S +F+RQAL A +LGL+HP +W +
Sbjct: 263 TGRTHQIRVHMQHLGFALVGDSVYGKQHLVS-VFSRQALQARRLGLVHPGTLEACEWIVP 321
Query: 241 LPDDISKLITFSGI 254
L DD ++LI +GI
Sbjct: 322 LADDFAQLIATAGI 335
>gi|427403972|ref|ZP_18894854.1| RluA family pseudouridine synthase [Massilia timonae CCUG 45783]
gi|425717211|gb|EKU80176.1| RluA family pseudouridine synthase [Massilia timonae CCUG 45783]
Length = 364
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 180/251 (71%), Gaps = 1/251 (0%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I+++P+ + + L+I++ED++II++NK AGLVVHP GN SGTL + L
Sbjct: 90 GDETIVVEPQAAPEDTAFAPEPMDLNIVHEDDDIIVINKPAGLVVHPGSGNWSGTLLNGL 149
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L+ VPRAGIVHRLDK++SGLMVV K++ + LV QL+ V+R+Y A+VWG P
Sbjct: 150 LHHCPQLVGVPRAGIVHRLDKDTSGLMVVGKTLAAQTDLVRQLQARTVKREYFALVWGTP 209
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+ +G I++ + R+ +R+KM VS + AKPA+T+YER+ TG ++++ +SL+RC L+TGRT
Sbjct: 210 RASGTIDSPMGRDAKDRVKMAVSNSPFAKPAITHYERVVTGELDRRPVSLVRCRLETGRT 269
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVHMQ LG +VGD +YGK++ + +F+RQAL A +LGL+HP + +W + L DD
Sbjct: 270 HQIRVHMQSLGFALVGDAVYGKRH-LTPVFHRQALQARRLGLVHPGTGEQCEWTVPLADD 328
Query: 245 ISKLITFSGIK 255
+ LI +GI+
Sbjct: 329 FAALIAQAGIE 339
>gi|398832780|ref|ZP_10590932.1| pseudouridine synthase, RluA family [Herbaspirillum sp. YR522]
gi|398222725|gb|EJN09091.1| pseudouridine synthase, RluA family [Herbaspirillum sp. YR522]
Length = 373
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 176/250 (70%), Gaps = 1/250 (0%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I I P+ + E + + LDI++ED II+L+K AGLVVHPA GN SGTL + L
Sbjct: 100 GDEQIEIAPQAAPQDHPYEPEPMALDILHEDKAIIVLDKPAGLVVHPAAGNWSGTLLNGL 159
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ ++R+YLA+VWG P
Sbjct: 160 LHHCPALAQVPRAGIVHRLDKETSGLMVVAKTLAAQTDLVRQLQARTMKRQYLALVWGTP 219
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+L+G ++A + R+P +RIKM VS++ AK A+T+Y +LATG+I++K +SL+ C L+TGRT
Sbjct: 220 QLSGTVDAPMARHPRDRIKMAVSESMYAKTAVTHYRKLATGLIDRKPVSLLHCRLETGRT 279
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVH+ LG +VGD LYGK + +F RQAL A +LG++HP + +W LP D
Sbjct: 280 HQIRVHLASLGFALVGDALYGKHHLIP-VFPRQALQAARLGVVHPASGKFRQWAAPLPAD 338
Query: 245 ISKLITFSGI 254
I +L+ +GI
Sbjct: 339 IVELLQRAGI 348
>gi|300312307|ref|YP_003776399.1| ribosomal large subunit pseudouridine synthase D [Herbaspirillum
seropedicae SmR1]
gi|300075092|gb|ADJ64491.1| ribosomal large subunit pseudouridine synthase D protein
[Herbaspirillum seropedicae SmR1]
Length = 370
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 180/254 (70%), Gaps = 1/254 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G EL+ + P+ + + LDI++ED +I+LNK AGLVVHPA GN SGTL
Sbjct: 91 MTMLGDELVEVAPQSVPSDQPYGPEPMALDILHEDKALIVLNKPAGLVVHPAAGNWSGTL 150
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK++SG+MVVAK++ + LV QL+ ++R+YLA+V
Sbjct: 151 LNGLLHHCPALAKVPRAGIVHRLDKDTSGIMVVAKTLAAQTDLVRQLQARSMKRQYLALV 210
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG+P+L+G INA + R+P +RIKM VS++ AKPA+T+Y RLATG I++K +SLI C L+
Sbjct: 211 WGLPQLSGTINAPMARHPRDRIKMAVSQSMRAKPAVTHYRRLATGEIDRKPVSLIHCRLE 270
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVH+Q LG +VGD LYGK + S +F RQAL A +LGL+HP +W
Sbjct: 271 TGRTHQIRVHLQSLGFPLVGDALYGKHHLVS-VFPRQALLAGRLGLLHPSTGKFRQWAAP 329
Query: 241 LPDDISKLITFSGI 254
LP+DI L+ +GI
Sbjct: 330 LPEDIVALLQRAGI 343
>gi|445496696|ref|ZP_21463551.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium
sp. HH01]
gi|444786691|gb|ELX08239.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium
sp. HH01]
Length = 350
Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 174/254 (68%), Gaps = 2/254 (0%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E I+I P+ + + ++L+I+YED ++++NK AGLVVHP GN SGTL +
Sbjct: 91 VYGDEKIVILPQPAPEDEAFKPEPMELNIVYEDEHLMVINKPAGLVVHPGAGNWSGTLLN 150
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L VPRAGIVHRLDK++SGLMVV K++ S LV QL V+R+Y A+VWG
Sbjct: 151 GLLHHCPQLAGVPRAGIVHRLDKDTSGLMVVGKTLPSQTDLVRQLAARTVKREYYAVVWG 210
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKT 181
+P+++G I+A++ R+P +RIKM VS +KPA+T+Y+ L G + + + ++L++C L+T
Sbjct: 211 MPRISGTIDASMGRHPKDRIKMAVSTGMGSKPAITHYQVLGGGKLGEGRPVTLVQCRLET 270
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINL 241
GRTHQIRVHM +G +VGD YGK++ F RQAL A +LGL+HP + +W + L
Sbjct: 271 GRTHQIRVHMMSIGFPLVGDTTYGKQHLADY-FPRQALQARRLGLVHPATGEQCEWTVPL 329
Query: 242 PDDISKLITFSGIK 255
DD ++L+ +GI+
Sbjct: 330 ADDFAELLARAGIE 343
>gi|237746821|ref|ZP_04577301.1| ribosomal large subunit pseudouridine synthase D [Oxalobacter
formigenes HOxBLS]
gi|229378172|gb|EEO28263.1| ribosomal large subunit pseudouridine synthase D [Oxalobacter
formigenes HOxBLS]
Length = 342
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 169/254 (66%), Gaps = 1/254 (0%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+ G E I++ P+ + + +++ED +I+++NK AGLVVHPA GN SGTL
Sbjct: 78 QTVVGDEEIVVLPQLAEEDLAFVPEPVGFPVLFEDRDILVVNKPAGLVVHPAAGNWSGTL 137
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P +PRAGIVHRLDK++SGLMVVAK++++ HLV QL+ V+R+YLA+V
Sbjct: 138 LNGLLHHLPKSAAIPRAGIVHRLDKDTSGLMVVAKTLEAQTHLVRQLQARTVRREYLALV 197
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
WG + G ++ I R+P +RIKM V + + KPA+T+Y L TG+ N +SL++C L+
Sbjct: 198 WGETPVAGTVDQPIGRHPKDRIKMAVLQTASGKPAVTHYRLLETGVCNGSKVSLVKCRLE 257
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHMQ+ G +VGD LYGK S +F RQALHA++LGL+HP N +W
Sbjct: 258 TGRTHQIRVHMQFSGFPLVGDPLYGKS-RLSAVFPRQALHAFRLGLLHPAKNEWNEWMAP 316
Query: 241 LPDDISKLITFSGI 254
LP D+ L+ S I
Sbjct: 317 LPSDMRMLLAGSSI 330
>gi|187928999|ref|YP_001899486.1| pseudouridine synthase [Ralstonia pickettii 12J]
gi|309782614|ref|ZP_07677336.1| ribosomal large subunit pseudouridine synthase D [Ralstonia sp.
5_7_47FAA]
gi|404396152|ref|ZP_10987948.1| ribosomal large subunit pseudouridine synthase D [Ralstonia sp.
5_2_56FAA]
gi|187725889|gb|ACD27054.1| pseudouridine synthase, RluA family [Ralstonia pickettii 12J]
gi|308918589|gb|EFP64264.1| ribosomal large subunit pseudouridine synthase D [Ralstonia sp.
5_7_47FAA]
gi|348615005|gb|EGY64539.1| ribosomal large subunit pseudouridine synthase D [Ralstonia sp.
5_2_56FAA]
Length = 370
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
ISG + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 ISGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP + +PRAGIVHRLDK++SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPDAVELPRAGIVHRLDKDTSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I+A I R+P +R +M + + + KPA T+++ L + + +SL+RC L+TG
Sbjct: 222 ETPEEATIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVRCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LGL+HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAQLPVPFTRQALHAVRLGLVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD + L+
Sbjct: 342 KSVHWEAGVPDDFADLL 358
>gi|241663187|ref|YP_002981547.1| pseudouridine synthase [Ralstonia pickettii 12D]
gi|240865214|gb|ACS62875.1| pseudouridine synthase, RluA family [Ralstonia pickettii 12D]
Length = 370
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
ISG + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 ISGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP + +PRAGIVHRLDK++SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPDAVELPRAGIVHRLDKDTSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I+A I R+P +R +M + + + KPA T+++ L + + +SL+RC L+TG
Sbjct: 222 ETPEEATIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVRCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSK----------SLIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LGL+HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPVPFARQALHAVRLGLVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD + L+
Sbjct: 342 KSVHWEAGVPDDFADLL 358
>gi|237748962|ref|ZP_04579442.1| ribosomal large subunit pseudouridine synthase D [Oxalobacter
formigenes OXCC13]
gi|229380324|gb|EEO30415.1| ribosomal large subunit pseudouridine synthase D [Oxalobacter
formigenes OXCC13]
Length = 342
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 160/231 (69%), Gaps = 1/231 (0%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + +++EDN I+++NK A LVVHPA GN SGTL + LL P VPRAGIVHRLD
Sbjct: 102 EAVDFPVVFEDNAILVVNKPASLVVHPAAGNWSGTLLNGLLYRDPKSATVPRAGIVHRLD 161
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SG+MVVAK+I++ LV QL+ V+R+YLA+VWG +G I+ I R+P +R+KM
Sbjct: 162 KETSGVMVVAKTIEAQTDLVRQLQARTVKREYLALVWGDTPQSGTIDEPIGRHPRDRVKM 221
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+T++ ++A G+ N ++SL++C L+TGRTHQIRVH+Q +G +VGD +Y
Sbjct: 222 AVIHTQSGKPAVTHFRKIAEGVCNNMNVSLVKCRLETGRTHQIRVHLQSIGFPLVGDPVY 281
Query: 205 GKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIK 255
GK + S +F RQALHA++LGLIHP +W LP D+ L+ S I+
Sbjct: 282 GKSHLAS-VFPRQALHAFRLGLIHPCTKEVCEWTAPLPQDMKALLEQSFIE 331
>gi|420252911|ref|ZP_14755979.1| pseudouridine synthase, RluA family [Burkholderia sp. BT03]
gi|398052952|gb|EJL45183.1| pseudouridine synthase, RluA family [Burkholderia sp. BT03]
Length = 427
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 161/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 142 EPVPLDIVYEDDTLVVINKPAGLVVHPAAGNWSGTVLNGLLHRYGDAAAGLPRAGIVHRL 201
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG + G I+A I R+P R +
Sbjct: 202 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMRDEGTIDAPIGRDPRERTR 261
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ R+ + I ++ +S I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 262 MAVVTGASGKPARTHFRRIDSAIWERQPVSAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 321
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++L L+HP+ ++WR ++PDDI++L G+
Sbjct: 322 YGRARGKRSVAPLPGGFARQALHAWRLALVHPRTGRTMQWRADVPDDIAELSEALGL 378
>gi|390572002|ref|ZP_10252229.1| RluA family pseudouridine synthase [Burkholderia terrae BS001]
gi|389935985|gb|EIM97886.1| RluA family pseudouridine synthase [Burkholderia terrae BS001]
Length = 427
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 160/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 142 EPVPLDIVYEDDTLVVINKPAGLVVHPAAGNWSGTVLNGLLHRYGDAAAGLPRAGIVHRL 201
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG + G I+A I R+P R +
Sbjct: 202 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMRDEGTIDAPIGRDPRERTR 261
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V KPA T++ R+ + I ++ +S I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 262 MAVVTGAAGKPARTHFRRIDSAIWERQPVSAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 321
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++L L+HP+ ++WR ++PDDI++L G+
Sbjct: 322 YGRARGKRSVAPLPGGFARQALHAWRLALVHPRTGRTMQWRADVPDDIAELSEALGL 378
>gi|344174604|emb|CCA86405.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia syzygii R24]
Length = 358
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + + + P++ + + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 90 VCGGDRVEVVPQRAADESAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 149
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 150 GLLHRYPEAAELPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 209
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL+RC L+TG
Sbjct: 210 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVRCQLETG 269
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LGL+HP +
Sbjct: 270 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPVPFARQALHAVRLGLVHPASG 329
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 330 QSIHWHAGVPDDLAELM 346
>gi|300691371|ref|YP_003752366.1| rRNA-uridine isomerase D [Ralstonia solanacearum PSI07]
gi|299078431|emb|CBJ51083.2| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia solanacearum PSI07]
gi|344167733|emb|CCA79974.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D) [blood
disease bacterium R229]
Length = 358
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + + + P++ + + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 90 VCGGDRVEVVPQRAADESAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 149
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 150 GLLHRYPEAAELPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 209
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL+RC L+TG
Sbjct: 210 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVRCQLETG 269
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LGL+HP +
Sbjct: 270 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPVPFARQALHAVRLGLVHPASG 329
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 330 QSIHWHAGVPDDLAELM 346
>gi|407713454|ref|YP_006834019.1| Ribosomal large subunit pseudouridine synthase D [Burkholderia
phenoliruptrix BR3459a]
gi|407235638|gb|AFT85837.1| Ribosomal large subunit pseudouridine synthase D [Burkholderia
phenoliruptrix BR3459a]
Length = 395
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 160/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 110 EPVPLDIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPRAGIVHRL 169
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 170 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 229
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ R+ T + ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 230 MAVVTGASGKPARTHFRRVDTALWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 289
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P+DI+ L G+
Sbjct: 290 YGRARGKRSVTPLPGDFARQALHAWRLGLIHPKTGRTMQWRADVPEDIAALSAALGL 346
>gi|323526134|ref|YP_004228287.1| RluA family pseudouridine synthase [Burkholderia sp. CCGE1001]
gi|323383136|gb|ADX55227.1| pseudouridine synthase, RluA family [Burkholderia sp. CCGE1001]
Length = 426
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 160/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 139 EPVPLDIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPRAGIVHRL 198
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 199 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 258
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ R+ T + ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 259 MAVVTGASGKPARTHFRRVDTALWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 318
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P+DI+ L G+
Sbjct: 319 YGRARGKRSVAPLPGDFARQALHAWRLGLIHPKTGRTMQWRADVPEDIAALSAALGL 375
>gi|134295824|ref|YP_001119559.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
vietnamiensis G4]
gi|134138981|gb|ABO54724.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
vietnamiensis G4]
Length = 401
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AGLVVHPA GN SGTL + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTLLNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCVWQRQPVSAIQCDLETGRTHQIRVHCSHAGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD+++L+ G
Sbjct: 311 YGRARGKRSVTPLPNGFARQALHAWRLGLVHPVTGKTMQWRCPLPDDMNELVAALGF 367
>gi|393776856|ref|ZP_10365150.1| 23S rRNA pseudouridine synthase [Ralstonia sp. PBA]
gi|392716213|gb|EIZ03793.1| 23S rRNA pseudouridine synthase [Ralstonia sp. PBA]
Length = 388
Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 156/239 (65%), Gaps = 10/239 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LD++YED ++++NK AGLVVHPA GN SGT+ + +L P +PRAGIVHRLDK
Sbjct: 140 VPLDVVYEDESLLVINKPAGLVVHPAAGNWSGTVLNGVLYRDPQASRLPRAGIVHRLDKE 199
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV+A+++ + LV QL+ V+R YLA+VWG P +G I+A I R+P R +M +
Sbjct: 200 TSGLMVIARTLTAQTDLVRQLQARTVKRTYLALVWGEPPESGTIDAPIGRDPRERTRMAI 259
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
++ + KPA T++E L T + + ISL+RC L+TGRTHQIRVH Q G+ +VGD +Y +
Sbjct: 260 IESASGKPARTHFETLQTVDLGRSAISLVRCQLETGRTHQIRVHFQAFGYPLVGDPVYAR 319
Query: 207 KYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIK 255
++ L F RQALHA++LGL HP + L+WR P D+ L+ G +
Sbjct: 320 AVTRGRAQVMRAPLPLPFERQALHAFRLGLRHPVDGRTLEWRAAPPADMLALMDALGFE 378
>gi|300703940|ref|YP_003745542.1| ribosomal large subunit pseudouridine synthase d [Ralstonia
solanacearum CFBP2957]
gi|299071603|emb|CBJ42927.1| Ribosomal large subunit pseudouridine synthase D [Ralstonia
solanacearum CFBP2957]
Length = 370
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 VCGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 222 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVIDLGRAQVSLVQCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSK----------SLIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LG++HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGRPQTIKAPLPIPFARQALHAVRLGIVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 342 QSMHWHAGVPDDLAELM 358
>gi|17546347|ref|NP_519749.1| ribosomal large subunit pseudouridine synthase D protein [Ralstonia
solanacearum GMI1000]
gi|34395802|sp|Q8XYX8.1|RLUD_RALSO RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|17428644|emb|CAD15330.1| probable ribosomal large subunit pseudouridine synthase d protein
[Ralstonia solanacearum GMI1000]
Length = 358
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 164/257 (63%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + + LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 90 VCGGDRIEVVPQRADDENAFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 149
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 150 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 209
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 210 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETG 269
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + F RQALHA +LGL+HP +
Sbjct: 270 RTHQIRVHFESEGHPLLGDPVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASG 329
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 330 QSVHWHAGVPDDLAELM 346
>gi|221212790|ref|ZP_03585766.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Burkholderia multivorans CGD1]
gi|221167003|gb|EED99473.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Burkholderia multivorans CGD1]
Length = 400
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGAMPDEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVAPLPGGFARQALHAWRLGLVHPVTGSAMQWRCPLPDDMTALVDALGF 367
>gi|416909206|ref|ZP_11931285.1| RluA family pseudouridine synthase [Burkholderia sp. TJI49]
gi|325528651|gb|EGD05737.1| RluA family pseudouridine synthase [Burkholderia sp. TJI49]
Length = 359
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 158/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 89 EPVPLDVVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 148
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG+ +G I+A I R+P R +
Sbjct: 149 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGMMPEDGTIDAPIGRDPRERTR 208
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 209 MAVVTGASGKPARTHFRTVDTCVWQRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 268
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHP ++WR LPDD++ L+ G
Sbjct: 269 YGRARGKRSVAALPNGFARQALHAWRLGLIHPVTGKAMQWRCPLPDDMNALVEALGF 325
>gi|421898166|ref|ZP_16328533.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum MolK2]
gi|206589372|emb|CAQ36334.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum MolK2]
Length = 370
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 VCGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 222 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVIDLGRAQVSLVQCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LG++HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPIPFARQALHAVRLGIVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 342 QSMHWHAGVPDDLAELM 358
>gi|161524654|ref|YP_001579666.1| RluA family pseudouridine synthase [Burkholderia multivorans ATCC
17616]
gi|189350589|ref|YP_001946217.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
multivorans ATCC 17616]
gi|160342083|gb|ABX15169.1| pseudouridine synthase, RluA family [Burkholderia multivorans ATCC
17616]
gi|189334611|dbj|BAG43681.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
multivorans ATCC 17616]
Length = 400
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGAMPDEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVAPLPGGFARQALHAWRLGLVHPVTGSAMQWRCPLPDDMTALVEALGF 367
>gi|387902335|ref|YP_006332674.1| ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
KJ006]
gi|387577227|gb|AFJ85943.1| Ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
KJ006]
Length = 359
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 155/235 (65%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRLDK 85
+ LD+IYED+ ++++NK AGLVVHPA GN SGTL + LL Y +PRAGIVHRLDK
Sbjct: 91 VPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTLLNGLLHRYGDAAAGLPRAGIVHRLDK 150
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
+SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 151 ETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEEGTIDAPIGRDPRERTRMA 210
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +YG
Sbjct: 211 VVTGASGKPARTHFRTVDTCVWQRQPVSAIQCDLETGRTHQIRVHCSHAGHPLLGDPVYG 270
Query: 206 KKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
+ K + F RQALHA++LGL+HP ++WR LPDD+++L+ G
Sbjct: 271 RARGKRSVTPLPNGFARQALHAWRLGLVHPVTGKTMQWRCPLPDDMNELVAALGF 325
>gi|421888050|ref|ZP_16319165.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia solanacearum K60-1]
gi|378966575|emb|CCF95913.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia solanacearum K60-1]
Length = 370
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 VCGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 222 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVIDLGRAQVSLVQCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LG++HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPIPFARQALHAVRLGIVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 342 QSMHWHAGVPDDLAELM 358
>gi|386333375|ref|YP_006029544.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum Po82]
gi|334195823|gb|AEG69008.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum Po82]
Length = 370
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 164/257 (63%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 VCGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 222 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVIDLGRAQVSLVQCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LG++HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPMPFARQALHAVRLGIVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD++ L+
Sbjct: 342 QSMHWHAGVPDDLADLM 358
>gi|299066639|emb|CBJ37832.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Ralstonia solanacearum CMR15]
Length = 353
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 164/257 (63%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 85 VCGGDRIEVVPQRADDENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 144
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 145 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 204
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 205 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETG 264
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + F RQALHA +LGL+HP +
Sbjct: 265 RTHQIRVHFESEGHPLLGDPVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASG 324
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 325 HSVHWHAGVPDDLAELM 341
>gi|421474832|ref|ZP_15922839.1| pseudouridine synthase, RluA family [Burkholderia multivorans CF2]
gi|400231382|gb|EJO61079.1| pseudouridine synthase, RluA family [Burkholderia multivorans CF2]
Length = 357
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 89 EPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 148
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 149 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGAMPDEGTIDAPIGRDPRERTR 208
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 209 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 268
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 269 YGRARGKRSVAPLPGGFARQALHAWRLGLVHPVTGSAMQWRCPLPDDMTALVEALGF 325
>gi|295676473|ref|YP_003604997.1| RluA family pseudouridine synthase [Burkholderia sp. CCGE1002]
gi|295436316|gb|ADG15486.1| pseudouridine synthase, RluA family [Burkholderia sp. CCGE1002]
Length = 416
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 157/235 (66%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRLDK 85
+ L+I+YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRLDK
Sbjct: 143 VPLEIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLHRYGETAAGLPRAGIVHRLDK 202
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
+SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +M
Sbjct: 203 ETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPDEGTIDAPIGRDPRERTRMA 262
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V KPA T++ R+A+ I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +YG
Sbjct: 263 VVTGAAGKPARTHFRRVASAIWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPVYG 322
Query: 206 KKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
+ K + F RQALHA++LGLIHPK ++WR ++P DI L G+
Sbjct: 323 RARGKRSVTPLPDGFARQALHAWRLGLIHPKTGRSMQWRADVPADIEALSAALGL 377
>gi|221198059|ref|ZP_03571105.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
multivorans CGD2M]
gi|221204383|ref|ZP_03577400.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
multivorans CGD2]
gi|221175240|gb|EEE07670.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
multivorans CGD2]
gi|221181991|gb|EEE14392.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
multivorans CGD2M]
Length = 399
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGAMPDEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVAPLPGGFARQALHAWRLGLVHPVTGSAMQWRCPLPDDMTALVEALGF 367
>gi|402566407|ref|YP_006615752.1| RluA family pseudouridine synthase [Burkholderia cepacia GG4]
gi|402247604|gb|AFQ48058.1| RluA family pseudouridine synthase [Burkholderia cepacia GG4]
Length = 401
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCVWQRQPVSAIQCDLETGRTHQIRVHCSHAGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVTGKAMQWRCPLPDDMNALVAALGF 367
>gi|167587072|ref|ZP_02379460.1| pseudouridine synthase, RluA family protein [Burkholderia ubonensis
Bu]
Length = 401
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPDEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHAGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP + ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVSGKTMQWRCPLPDDMTALVAALGF 367
>gi|83745881|ref|ZP_00942938.1| Ribosomal large subunit pseudouridine synthase D [Ralstonia
solanacearum UW551]
gi|207743017|ref|YP_002259409.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum IPO1609]
gi|83727571|gb|EAP74692.1| Ribosomal large subunit pseudouridine synthase D [Ralstonia
solanacearum UW551]
gi|206594414|emb|CAQ61341.1| ribosomal large subunit pseudouridine synthase d protein [Ralstonia
solanacearum IPO1609]
Length = 370
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 164/257 (63%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + I LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 102 VCGGDRIEVVPQRAADENAFVAEPIDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 161
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 162 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 221
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 222 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVIDLGRAQVSLVQCQLETG 281
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + + F RQALHA +LG++HP +
Sbjct: 282 RTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPVPFARQALHAVRLGIVHPASG 341
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD++ L+
Sbjct: 342 QSMHWHAGVPDDLADLM 358
>gi|209522216|ref|ZP_03270853.1| pseudouridine synthase, RluA family [Burkholderia sp. H160]
gi|209497345|gb|EDZ97563.1| pseudouridine synthase, RluA family [Burkholderia sp. H160]
Length = 419
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 157/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 141 EPVPLDIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGEAAAGLPRAGIVHRL 200
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 201 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPDEGTIDAPIGRDPRERTR 260
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V KPA T++ R+ + I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 261 MAVVTGAAGKPARTHFRRVTSAIWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 320
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P DI L G+
Sbjct: 321 YGRARGKRSVTPLPDGFARQALHAWRLGLIHPKTGRSMQWRADVPADIEALSAALGL 377
>gi|421467788|ref|ZP_15916376.1| pseudouridine synthase, RluA family [Burkholderia multivorans ATCC
BAA-247]
gi|400233201|gb|EJO62771.1| pseudouridine synthase, RluA family [Burkholderia multivorans ATCC
BAA-247]
Length = 399
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 157/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LDI+YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDIVYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMV+A+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVIARTLAAQTDLVRQLQARTVKRRYFALVWGAMPDEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + +++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWHRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVAPLPGGFARQALHAWRLGLVHPVTGSAMQWRCTLPDDMTALVEALGF 367
>gi|115351782|ref|YP_773621.1| RluA family pseudouridine synthase [Burkholderia ambifaria AMMD]
gi|115281770|gb|ABI87287.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
ambifaria AMMD]
Length = 405
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 157/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDVIYEDDALLVINKPAGVVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG +G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEDGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHVGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ LI G
Sbjct: 311 YGRARGKRSVAPLPDGFARQALHAWRLGLVHPLTGKTMQWRCPLPDDMNALIAALGF 367
>gi|91783470|ref|YP_558676.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
xenovorans LB400]
gi|91687424|gb|ABE30624.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
xenovorans LB400]
Length = 438
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 159/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L+IIYED+ ++++NK AG+VVHPA GN SGTL + LL Y +PRAGIVHRL
Sbjct: 139 EPVPLEIIYEDDTLVVINKPAGMVVHPAAGNWSGTLLNGLLYRYGDAAAGLPRAGIVHRL 198
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 199 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 258
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ R+ + I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 259 MAVVTSAAGKPARTHFRRVDSAIWERQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 318
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P+D+ L G+
Sbjct: 319 YGRARGKRSVTPLPGGFARQALHAWRLGLIHPKTGRTMQWRADVPEDMEALSAALGL 375
>gi|107029027|ref|YP_626122.1| pseudouridine synthase, RluD [Burkholderia cenocepacia AU 1054]
gi|116689814|ref|YP_835437.1| RluA family pseudouridine synthase [Burkholderia cenocepacia
HI2424]
gi|254248088|ref|ZP_04941409.1| Pseudouridine synthase, RluD [Burkholderia cenocepacia PC184]
gi|105898191|gb|ABF81149.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
cenocepacia AU 1054]
gi|116647903|gb|ABK08544.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
cenocepacia HI2424]
gi|124872864|gb|EAY64580.1| Pseudouridine synthase, RluD [Burkholderia cenocepacia PC184]
Length = 402
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHAGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVTGKAMQWRCPLPDDMNTLVAALGF 367
>gi|78066563|ref|YP_369332.1| ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
383]
gi|77967308|gb|ABB08688.1| ribosomal large subunit pseudouridine synthase D [Burkholderia sp.
383]
Length = 402
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEEGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHAGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 311 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVTGKAMQWRCPLPDDMNTLVAALGF 367
>gi|307729591|ref|YP_003906815.1| RluA family pseudouridine synthase [Burkholderia sp. CCGE1003]
gi|307584126|gb|ADN57524.1| pseudouridine synthase, RluA family [Burkholderia sp. CCGE1003]
Length = 430
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 160/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L+I++ED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 139 EPVPLEIVFEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPRAGIVHRL 198
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 199 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 258
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ R+ T I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 259 MAVVTGASGKPARTHFRRVDTAIWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 318
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P+D++ L G+
Sbjct: 319 YGRARGKRSVTPLPGEFARQALHAWRLGLIHPKTGRSMQWRADVPEDMAALSAALGL 375
>gi|172060753|ref|YP_001808405.1| RluA family pseudouridine synthase [Burkholderia ambifaria MC40-6]
gi|171993270|gb|ACB64189.1| pseudouridine synthase, RluA family [Burkholderia ambifaria MC40-6]
Length = 407
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 157/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 131 EPVPLDVIYEDDALLVINKPAGVVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 190
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG +G I+A I R+P R +
Sbjct: 191 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEDGTIDAPIGRDPRERTR 250
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 251 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHVGHPLLGDPV 310
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ LI G
Sbjct: 311 YGRARGKRSVAPLPDGFARQALHAWRLGLVHPLTGKTMQWRCPLPDDMNALIAALGF 367
>gi|186475732|ref|YP_001857202.1| RluA family pseudouridine synthase [Burkholderia phymatum STM815]
gi|184192191|gb|ACC70156.1| pseudouridine synthase, RluA family [Burkholderia phymatum STM815]
Length = 436
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 154 EPVPLDVVYEDDTLVVINKPAGLVVHPAAGNWSGTVLNGLLHRYGDAAAGLPRAGIVHRL 213
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG +G I+A I R+P R +
Sbjct: 214 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPDDGTIDAPIGRDPRERTR 273
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V KPA T++ R+ + + ++ +S I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 274 MAVVTGAAGKPARTHFRRIDSTVWERQPVSAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 333
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++L L+HPK ++WR ++P DI++L G+
Sbjct: 334 YGRARGKRSVTPLPGGFARQALHAWRLALVHPKTGRTMQWRADVPGDIAELSEALGL 390
>gi|170692348|ref|ZP_02883511.1| pseudouridine synthase, RluA family [Burkholderia graminis C4D1M]
gi|170142778|gb|EDT10943.1| pseudouridine synthase, RluA family [Burkholderia graminis C4D1M]
Length = 450
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 159/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L+I+YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 139 EPVPLEIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPRAGIVHRL 198
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 199 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 258
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ R+ T I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 259 MAVVTGASGKPARTHFRRVDTAIWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 318
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P DI+ L G+
Sbjct: 319 YGRARGKRSVTPLPGEFARQALHAWRLGLIHPKTGRTMQWRADVPADIAALSAALGL 375
>gi|254252275|ref|ZP_04945593.1| Pseudouridine synthase RluD [Burkholderia dolosa AUO158]
gi|124894884|gb|EAY68764.1| Pseudouridine synthase RluD [Burkholderia dolosa AUO158]
Length = 400
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 156/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD++YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 130 EPVPLDVVYEDDALVVINKPAGVVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 189
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 190 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEAGTIDAPIGRDPRERTR 249
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 250 MAVVTGASGKPARTHFRTVDTCVWQRQPVSAIQCDLETGRTHQIRVHCSHVGHPLLGDPV 309
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 310 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVTGKAMQWRCPLPDDMNALVAALGF 366
>gi|171320446|ref|ZP_02909479.1| pseudouridine synthase, RluA family [Burkholderia ambifaria MEX-5]
gi|171094306|gb|EDT39380.1| pseudouridine synthase, RluA family [Burkholderia ambifaria MEX-5]
Length = 369
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 156/235 (66%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRLDK 85
+ LD+IYED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRLDK
Sbjct: 91 VPLDVIYEDDALLVINKPAGVVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRLDK 150
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
+SGLMVVA+++ + LV QL+ V+R+Y A+VWG +G I+A I R+P R +M
Sbjct: 151 ETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEDGTIDAPIGRDPRERTRMA 210
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +YG
Sbjct: 211 VVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHVGHPLLGDPVYG 270
Query: 206 KKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
+ K + F RQALHA++LGL+HP ++WR LPDD++ LI G
Sbjct: 271 RARGKRSVAPLPDGFARQALHAWRLGLVHPLTGKTMQWRCPLPDDMNALIAALGF 325
>gi|167562573|ref|ZP_02355489.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
oklahomensis EO147]
gi|167569756|ref|ZP_02362630.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
oklahomensis C6786]
Length = 395
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L ++YED+ +++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 130 EPVPLSVVYEDDTLVVIDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 189
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 190 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALAWGQMPAEGTIDAPIGRDPRERTRM 249
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 250 AVVTGAAGKPARTHFRTVDTAMWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 309
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 310 GRARGKRSVAPLPGGFARQALHAWRLGLVHPATGRTMQWRAPLPDDLAALVDALGF 365
>gi|385209738|ref|ZP_10036606.1| pseudouridine synthase, RluA family [Burkholderia sp. Ch1-1]
gi|385182076|gb|EIF31352.1| pseudouridine synthase, RluA family [Burkholderia sp. Ch1-1]
Length = 431
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 159/237 (67%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L I+YED+ ++++NK AG+VVHPA GN SGTL + LL Y +PRAGIVHRL
Sbjct: 139 EPVPLAIVYEDDTLVVINKPAGMVVHPAAGNWSGTLLNGLLYRYGDAAAGLPRAGIVHRL 198
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 199 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 258
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + + KPA T++ R+ + I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 259 MAVVTSASGKPARTHFRRVDSAIWERQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 318
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHPK ++WR ++P+D+ L G+
Sbjct: 319 YGRARGKRSVTPLPGGFARQALHAWRLGLIHPKTGRTMQWRADVPEDMEALSAALGL 375
>gi|170733153|ref|YP_001765100.1| RluA family pseudouridine synthase [Burkholderia cenocepacia MC0-3]
gi|169816395|gb|ACA90978.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia
MC0-3]
Length = 360
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 89 EPVPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 148
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 149 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEAGTIDAPIGRDPRERTR 208
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 209 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHAGHPLLGDPV 268
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 269 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVTGKAMQWRCPLPDDMNTLVAALGF 325
>gi|206560228|ref|YP_002230992.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
cenocepacia J2315]
gi|421867002|ref|ZP_16298664.1| Pseudouridine synthase, RluD( EC:4.2.1.70 ) [Burkholderia
cenocepacia H111]
gi|444359122|ref|ZP_21160453.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia BC7]
gi|444371044|ref|ZP_21170635.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia
K56-2Valvano]
gi|198036269|emb|CAR52165.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
cenocepacia J2315]
gi|358073166|emb|CCE49542.1| Pseudouridine synthase, RluD( EC:4.2.1.70 ) [Burkholderia
cenocepacia H111]
gi|443596294|gb|ELT64812.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia
K56-2Valvano]
gi|443602577|gb|ELT70646.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia BC7]
Length = 361
Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AGLVVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 89 EPVPLDVIYEDDALVVINKPAGLVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 148
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG G I+A I R+P R +
Sbjct: 149 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEAGTIDAPIGRDPRERTR 208
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH GH ++GD +
Sbjct: 209 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHAGHPLLGDPV 268
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LPDD++ L+ G
Sbjct: 269 YGRARGKRSVTPLPDGFARQALHAWRLGLVHPVTGKAMQWRCPLPDDMNALVAALGF 325
>gi|167619842|ref|ZP_02388473.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis Bt4]
Length = 385
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 120 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 179
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 180 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALVWGQMPDEGTIDAPIGRDPRERTRM 239
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 240 AVVTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 299
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LP D++ L+ G
Sbjct: 300 GRARGKRSVAPLPGGFARQALHAWRLGLVHPATGRSMQWRAPLPADLAALVDALGF 355
>gi|217421724|ref|ZP_03453228.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei 576]
gi|217395466|gb|EEC35484.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei 576]
Length = 395
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 130 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 189
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 190 KETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 249
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 250 AVVTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 309
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 310 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 365
>gi|170703044|ref|ZP_02893871.1| pseudouridine synthase, RluA family [Burkholderia ambifaria
IOP40-10]
gi|170132052|gb|EDT00553.1| pseudouridine synthase, RluA family [Burkholderia ambifaria
IOP40-10]
Length = 365
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 157/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + LD+IYED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 89 EPVPLDVIYEDDALLVINKPAGVVVHPAAGNWSGTILNGLLHRYGDAAAGLPRAGIVHRL 148
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG +G I+A I R+P R +
Sbjct: 149 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGTMPEDGTIDAPIGRDPRERTR 208
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + ++ +S I+C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 209 MAVVTGASGKPARTHFRTVDTCLWQRQPVSAIQCDLETGRTHQIRVHCAHVGHPLLGDPV 268
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR LP+D++ LI G
Sbjct: 269 YGRARGKRSVAPLPDGFARQALHAWRLGLVHPLTGKTMQWRCPLPEDMNALIAALGF 325
>gi|226197455|ref|ZP_03793032.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
Pakistan 9]
gi|418540697|ref|ZP_13106222.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1258a]
gi|418546942|ref|ZP_13112128.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1258b]
gi|225930834|gb|EEH26844.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
Pakistan 9]
gi|385360831|gb|EIF66738.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1258a]
gi|385362741|gb|EIF68546.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1258b]
Length = 389
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 359
>gi|167893970|ref|ZP_02481372.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 7894]
gi|167918689|ref|ZP_02505780.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei BCC215]
gi|237812527|ref|YP_002896978.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei MSHR346]
gi|254179573|ref|ZP_04886172.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1655]
gi|184210113|gb|EDU07156.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1655]
gi|237504431|gb|ACQ96749.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei MSHR346]
Length = 389
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 359
>gi|167581726|ref|ZP_02374600.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis TXDOH]
Length = 389
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALVWGQMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPATGRSMQWRAPLPADLAALVDALGF 359
>gi|339325596|ref|YP_004685289.1| ribosomal large subunit pseudouridine synthase D [Cupriavidus
necator N-1]
gi|338165753|gb|AEI76808.1| ribosomal large subunit pseudouridine synthase D [Cupriavidus
necator N-1]
Length = 420
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 158/251 (62%), Gaps = 10/251 (3%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
I I+P+ + + + LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL
Sbjct: 125 IEIQPQAAPESSAFSPEDVPLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRD 184
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P ++PRAGIVHRLDK +SGLMVVA+S+ + LV QL+ V+R Y+A+VWG G
Sbjct: 185 PAATSLPRAGIVHRLDKETSGLMVVARSLTAQTDLVRQLQARTVKRTYIALVWGRTYDEG 244
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I+A I R+P R +M V + KP+ T++ LAT + + +S++ C L+TGRTHQIR
Sbjct: 245 TIDAPIGRDPRERTRMAVVHTASGKPSRTHFRTLATVPLGRGFVSMVMCKLETGRTHQIR 304
Query: 189 VHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWR 238
VH + +GH +VGD +Y + + + + RQALHAY+LGL+HP ++ W
Sbjct: 305 VHFESIGHPLVGDPVYFRATQRGQRPAVRAPLPVPYERQALHAYQLGLVHPATGKRMSWT 364
Query: 239 INLPDDISKLI 249
P+D+ LI
Sbjct: 365 AQPPEDLQALI 375
>gi|53723511|ref|YP_102984.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
mallei ATCC 23344]
gi|76810454|ref|YP_333728.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1710b]
gi|52426934|gb|AAU47527.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
mallei ATCC 23344]
gi|76579907|gb|ABA49382.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1710b]
Length = 395
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 130 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 189
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 190 KETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 249
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 250 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 309
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 310 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 365
>gi|67641328|ref|ZP_00440109.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
mallei GB8 horse 4]
gi|121600453|ref|YP_993132.1| RluA family pseudouridine synthase [Burkholderia mallei SAVP1]
gi|124385530|ref|YP_001026092.1| RluA family pseudouridine synthase [Burkholderia mallei NCTC 10229]
gi|126448439|ref|YP_001080638.1| RluA family pseudouridine synthase [Burkholderia mallei NCTC 10247]
gi|134277051|ref|ZP_01763766.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei 305]
gi|167902420|ref|ZP_02489625.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei NCTC 13177]
gi|254177619|ref|ZP_04884274.1| pseudouridine synthase, RluA family [Burkholderia mallei ATCC
10399]
gi|254199929|ref|ZP_04906295.1| pseudouridine synthase, RluA family [Burkholderia mallei FMH]
gi|254206262|ref|ZP_04912614.1| pseudouridine synthase, RluA family [Burkholderia mallei JHU]
gi|254260754|ref|ZP_04951808.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1710a]
gi|254358323|ref|ZP_04974596.1| pseudouridine synthase, RluA family [Burkholderia mallei
2002721280]
gi|121229263|gb|ABM51781.1| pseudouridine synthase, RluA family [Burkholderia mallei SAVP1]
gi|124293550|gb|ABN02819.1| pseudouridine synthase, RluA family [Burkholderia mallei NCTC
10229]
gi|126241309|gb|ABO04402.1| pseudouridine synthase, RluA family [Burkholderia mallei NCTC
10247]
gi|134250701|gb|EBA50780.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei 305]
gi|147749525|gb|EDK56599.1| pseudouridine synthase, RluA family [Burkholderia mallei FMH]
gi|147753705|gb|EDK60770.1| pseudouridine synthase, RluA family [Burkholderia mallei JHU]
gi|148027450|gb|EDK85471.1| pseudouridine synthase, RluA family [Burkholderia mallei
2002721280]
gi|160698658|gb|EDP88628.1| pseudouridine synthase, RluA family [Burkholderia mallei ATCC
10399]
gi|238522242|gb|EEP85688.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
mallei GB8 horse 4]
gi|254219443|gb|EET08827.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1710a]
Length = 389
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 359
>gi|167910661|ref|ZP_02497752.1| pseudouridine synthase, RluA family protein [Burkholderia
pseudomallei 112]
Length = 389
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 359
>gi|83719070|ref|YP_442774.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis E264]
gi|83652895|gb|ABC36958.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis E264]
Length = 391
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 151/236 (63%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 126 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 185
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 186 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALVWGQMPDEGTIDAPIGRDPRERTRM 245
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 246 AVVTGAAGKPARTHFRTVDTTPWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 305
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LP D++ L+ G
Sbjct: 306 GRARGKRSVAPLPGGFARQALHAWRLGLVHPATGRSMQWRAPLPADLAALVDALGF 361
>gi|94310295|ref|YP_583505.1| 23S rRNA pseudouridine synthase [Cupriavidus metallidurans CH34]
gi|93354147|gb|ABF08236.1| 23S rRNA pseudouridine synthase [Cupriavidus metallidurans CH34]
Length = 403
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 150/233 (64%), Gaps = 10/233 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL P +PRAGIVHRLDK
Sbjct: 133 VPLDVVYEDDAMLVINKPAGLVVHPAAGNWSGTVLNGLLHRDPSAARLPRAGIVHRLDKE 192
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ + LV QL V+R YLA+VWG +G I+A I R+P R +M +
Sbjct: 193 TSGLMVVARTLVAQTDLVRQLAARTVKRTYLALVWGETPDDGTIDAPIGRDPRERTRMAI 252
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KP+ T++E L T + + +S++ C L+TGRTHQIRVH + +GH +VGD +Y K
Sbjct: 253 VHTNSGKPSRTHFETLGTVPLGRGKVSMVMCQLETGRTHQIRVHFESIGHPLVGDPVYHK 312
Query: 207 KYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ + F RQALHAY+LGL+HP K+ W P+D+ LI
Sbjct: 313 ATQRGQRPAIRVPLPVPFTRQALHAYRLGLVHPVTGRKMSWEAEPPEDLQALI 365
>gi|257138984|ref|ZP_05587246.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis E264]
Length = 385
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 151/236 (63%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 120 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 179
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 180 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALVWGQMPDEGTIDAPIGRDPRERTRM 239
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 240 AVVTGAAGKPARTHFRTVDTTPWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 299
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LP D++ L+ G
Sbjct: 300 GRARGKRSVAPLPGGFARQALHAWRLGLVHPATGRSMQWRAPLPADLAALVDALGF 355
>gi|187923831|ref|YP_001895473.1| pseudouridine synthase [Burkholderia phytofirmans PsJN]
gi|187715025|gb|ACD16249.1| pseudouridine synthase, RluA family [Burkholderia phytofirmans
PsJN]
Length = 431
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 158/237 (66%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L+I+YED+ ++++NK AG+VVHPA GN SGT+ + LL Y +PRAGIVHRL
Sbjct: 139 EPVPLEIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPRAGIVHRL 198
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+YLA+VWG G I+A I R+P R +
Sbjct: 199 DKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMPEEGTIDAPIGRDPRERTR 258
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + + KPA T++ R+ + I ++ ++ I C+L+TGRTHQIRVH +GH ++GD +
Sbjct: 259 MAVVTSASGKPARTHFRRVDSAIWQRQPVTAIHCDLETGRTHQIRVHCAHIGHPLLGDPV 318
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHP+ ++WR + P D+ L G+
Sbjct: 319 YGRARGKRSVTPLPDGFARQALHAWRLGLIHPQTGRTMQWRADAPADMEALSAALGL 375
>gi|53719166|ref|YP_108152.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei K96243]
gi|126454439|ref|YP_001066469.1| RluA family pseudouridine synthase [Burkholderia pseudomallei
1106a]
gi|242316335|ref|ZP_04815351.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1106b]
gi|52209580|emb|CAH35533.1| putative ribosomal large subunit pseudouridine synthase D
[Burkholderia pseudomallei K96243]
gi|126228081|gb|ABN91621.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1106a]
gi|242139574|gb|EES25976.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
1106b]
Length = 395
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 130 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 189
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 190 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 249
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 250 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 309
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 310 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 365
>gi|254189036|ref|ZP_04895547.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
Pasteur 52237]
gi|157936715|gb|EDO92385.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
Pasteur 52237]
Length = 395
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 130 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 189
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 190 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 249
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 250 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 309
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 310 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 365
>gi|254297450|ref|ZP_04964903.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
406e]
gi|157806772|gb|EDO83942.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei
406e]
Length = 389
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 359
>gi|424904603|ref|ZP_18328113.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis MSMB43]
gi|390930581|gb|EIP87983.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis MSMB43]
Length = 389
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 151/236 (63%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDEAIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALVWGQMPDKGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRAVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVTPLPGGFARQALHAWRLGLVHPATGRTMQWRAPLPADLAALVEALGF 359
>gi|126438505|ref|YP_001059203.1| RluA family pseudouridine synthase [Burkholderia pseudomallei 668]
gi|167738292|ref|ZP_02411066.1| pseudouridine synthase, RluA family protein [Burkholderia
pseudomallei 14]
gi|167815478|ref|ZP_02447158.1| pseudouridine synthase, RluA family protein [Burkholderia
pseudomallei 91]
gi|167845428|ref|ZP_02470936.1| pseudouridine synthase, RluA family protein [Burkholderia
pseudomallei B7210]
gi|386861553|ref|YP_006274502.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1026b]
gi|403518898|ref|YP_006653031.1| RluA family pseudouridine synthase [Burkholderia pseudomallei
BPC006]
gi|418383018|ref|ZP_12966936.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 354a]
gi|418539405|ref|ZP_13105001.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1026a]
gi|418553161|ref|ZP_13117999.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 354e]
gi|126217998|gb|ABN81504.1| pseudouridine synthase, RluA family [Burkholderia pseudomallei 668]
gi|385346029|gb|EIF52722.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1026a]
gi|385372095|gb|EIF77227.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 354e]
gi|385376789|gb|EIF81425.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 354a]
gi|385658681|gb|AFI66104.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 1026b]
gi|403074540|gb|AFR16120.1| RluA family pseudouridine synthase [Burkholderia pseudomallei
BPC006]
Length = 389
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 124 EPVPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 183
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+ WG G I+A I R+P R +M
Sbjct: 184 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRM 243
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 244 AVVTGAAGKPARTHFRTVDTTLWARQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 303
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP + ++WR LP D++ L+ G
Sbjct: 304 GRARGKRSVAPLPGGFARQALHAWRLGLVHPASGRSMQWRAPLPADLAALVDALGF 359
>gi|167836421|ref|ZP_02463304.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
thailandensis MSMB43]
Length = 344
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 151/236 (63%), Gaps = 6/236 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I+YED I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLD
Sbjct: 79 EPVPLSIVYEDEAIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLD 138
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVA+++ + L+ QL+ V+R+Y A+VWG G I+A I R+P R +M
Sbjct: 139 KETSGLMVVARTLAAQTDLIRQLQARTVKRRYFALVWGQMPDKGTIDAPIGRDPRERTRM 198
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +Y
Sbjct: 199 AVVTGAAGKPARTHFRAVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVY 258
Query: 205 GKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
G+ K + F RQALHA++LGL+HP ++WR LP D++ L+ G
Sbjct: 259 GRARGKRSVTPLPGGFARQALHAWRLGLVHPATGRTMQWRAPLPADLAALVEALGF 314
>gi|82703097|ref|YP_412663.1| pseudouridine synthase RluD [Nitrosospira multiformis ATCC 25196]
gi|82411162|gb|ABB75271.1| ribosomal large subunit pseudouridine synthase D [Nitrosospira
multiformis ATCC 25196]
Length = 318
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/252 (47%), Positives = 160/252 (63%), Gaps = 13/252 (5%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I++ P ++ E + I LDI++ED+ III++K AGLVVHP GN GTL + L
Sbjct: 54 GGEKIVLSPARDPAETAHEPEAIALDIVHEDHAIIIIDKPAGLVVHPGSGNWQGTLLNAL 113
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L +PR+GIVHRLDK +SGL+VVAK++++ LV QL+ V+R+YLA+VWG
Sbjct: 114 LHHSPQLSGIPRSGIVHRLDKETSGLLVVAKTLEAQTSLVRQLQKRTVKREYLALVWGSV 173
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+G ++A + R+P R +M V + K A T YE L +L+RC L+TGRT
Sbjct: 174 SSHGRVDAPVGRHPVQRTRMAVVA--SGKEARTRYEVLE----QFTDCTLLRCGLETGRT 227
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKS-------LIFNRQALHAYKLGLIHPKNNLKLKW 237
HQIRVHMQ LGH +VGD LYG K K F RQALHA+KL L HP+N ++ W
Sbjct: 228 HQIRVHMQSLGHPLVGDPLYGGKAKKGSSATMQLAAFPRQALHAHKLELTHPQNGQRMGW 287
Query: 238 RINLPDDISKLI 249
LP+D+S L+
Sbjct: 288 EAPLPEDMSNLL 299
>gi|430807829|ref|ZP_19434944.1| RluA family pseudouridine synthase [Cupriavidus sp. HMR-1]
gi|429499861|gb|EKZ98260.1| RluA family pseudouridine synthase [Cupriavidus sp. HMR-1]
Length = 400
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 149/233 (63%), Gaps = 10/233 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL P +PRAGIVHRLDK
Sbjct: 133 VPLDVVYEDDAMLVINKPAGLVVHPAAGNWSGTVLNGLLHRDPSAARLPRAGIVHRLDKE 192
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ + LV QL V+R YLA+VWG +G I+A I R+P R +M +
Sbjct: 193 TSGLMVVARTLVAQTDLVRQLAARTVKRTYLALVWGETPDDGTIDAPIGRDPRERTRMAI 252
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KP+ T++E L T + + +S++ C L+TGRTHQIRVH + +GH +VGD +Y K
Sbjct: 253 VHTNSGKPSRTHFETLGTVPLGRGKVSMVMCQLETGRTHQIRVHFESIGHPLVGDPVYHK 312
Query: 207 KYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ + F RQALHAY+LGL+HP K W P+D+ LI
Sbjct: 313 ATQRGQRPAIRVPLPVPFTRQALHAYRLGLVHPVTGRKTSWEAEPPEDLQALI 365
>gi|312796112|ref|YP_004029034.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
rhizoxinica HKI 454]
gi|312167887|emb|CBW74890.1| Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
[Burkholderia rhizoxinica HKI 454]
Length = 373
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 154/231 (66%), Gaps = 6/231 (2%)
Query: 24 KKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRL 83
+ + L I+YED +++++K AGLVVHPA GN SGTL + LL YP +PRAGIVHRL
Sbjct: 101 PEPVPLPIVYEDETLVVIDKPAGLVVHPAAGNWSGTLLNGLLHRYPDAAGLPRAGIVHRL 160
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK++SGLMVVA+++ + LV QL+ V+R+Y+A WG+ +G I+A I R+P R +
Sbjct: 161 DKDTSGLMVVARTLAAQTDLVRQLQARTVKRRYIAFAWGVTPPSGCIDAPIGRDPRERTR 220
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V K A T+++ +ATG+ + + +S + C+L+TGRTHQIRVH+ GH ++GD L
Sbjct: 221 MAVLAGAAGKAARTHFKTVATGVWSGQPVSRLLCDLETGRTHQIRVHLAHTGHPLLGDPL 280
Query: 204 YGK------KYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG+ + + F RQALHA++L L+HP + + WR +P D+++L
Sbjct: 281 YGRVRNARQRPALPAGFARQALHAWRLALVHPATHAPVAWRSAMPQDLAQL 331
>gi|374364575|ref|ZP_09622677.1| 23S rRNA pseudouridine synthase [Cupriavidus basilensis OR16]
gi|373103872|gb|EHP44891.1| 23S rRNA pseudouridine synthase [Cupriavidus basilensis OR16]
Length = 436
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 159/254 (62%), Gaps = 11/254 (4%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E ++++P+ + + L+++YED +++++K AGLVVHPA GN GT+ + LL
Sbjct: 152 ERVVVRPQAAAESRAFVAEDVPLNVVYEDATLLVIDKPAGLVVHPAAGNWGGTVLNGLLH 211
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
YP ++PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 212 RYPEAASLPRAGIVHRLDKETSGLMVVARTLTAQTDLVRQLQARTVKRSYLALVWGETPE 271
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
+G I+A I R+P RI+M + + KP+ T++ L T + + H+S++ C L+TGRTHQ
Sbjct: 272 SGTIDAPIGRDPRERIRMAIVLTNSGKPSRTHFRTLGTVPLGRGHVSMVMCQLETGRTHQ 331
Query: 187 IRVHMQWLGHGIVGDNLYGKKYSK-----------SLIFNRQALHAYKLGLIHPKNNLKL 235
IRVH + +GH +VGD +Y + ++ + RQALHA++LGL+HP +
Sbjct: 332 IRVHFESIGHPMVGDPVYHRAATQRGQRPAIKAPLPVPLPRQALHAFRLGLVHPATGKTV 391
Query: 236 KWRINLPDDISKLI 249
W PDD+ LI
Sbjct: 392 SWEAQPPDDLQALI 405
>gi|194289464|ref|YP_002005371.1| 23S rRNA pseudouridine synthase [Cupriavidus taiwanensis LMG 19424]
gi|193223299|emb|CAQ69304.1| 23S rRNA pseudouridine synthase [Cupriavidus taiwanensis LMG 19424]
Length = 418
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 158/251 (62%), Gaps = 10/251 (3%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
I ++P+ + + + LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL
Sbjct: 121 IEVQPQAAPEASAFAPEDVPLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRD 180
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P ++PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R Y+A+VWG G
Sbjct: 181 PGAASLPRAGIVHRLDKETSGLMVVARTLTAQTDLVRQLQARTVKRTYIALVWGRTYDEG 240
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I+A I R+P R +M + + + KP+ T++ LAT + + +S++ C L+TGRTHQIR
Sbjct: 241 TIDAPIGRDPRERTRMAIVQTASGKPSRTHFRTLATVPLGRGFVSMVMCKLETGRTHQIR 300
Query: 189 VHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWR 238
VH + +GH +VGD +Y + + + + RQALHAYKLGL+HP + W
Sbjct: 301 VHFESIGHPLVGDPVYFRATQRGQRPAIRVPLPVPYERQALHAYKLGLVHPATGKHMSWT 360
Query: 239 INLPDDISKLI 249
P+D+ LI
Sbjct: 361 AQPPEDLQALI 371
>gi|73541038|ref|YP_295558.1| ribosomal large subunit pseudouridine synthase D [Ralstonia
eutropha JMP134]
gi|72118451|gb|AAZ60714.1| ribosomal large subunit pseudouridine synthase D [Ralstonia
eutropha JMP134]
Length = 403
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 159/258 (61%), Gaps = 13/258 (5%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
I ++P+ + + LD++YED+ +++++K AGLVVHPA GN SGT+ + LL
Sbjct: 115 IEVQPQAAPESQAFAPEDVALDVVYEDDALLVIDKPAGLVVHPAAGNWSGTVLNGLLHRD 174
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG G
Sbjct: 175 PTAAALPRAGIVHRLDKETSGLMVVARTLTAQTDLVRQLQARTVKRTYLALVWGRIYEEG 234
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I+A I R+P R +M + + KP+ T++ LAT + + +S++RC L+TGRTHQIR
Sbjct: 235 TIDAPIGRDPRERTRMAIVHTNSGKPSRTHFRTLATVPLGRSFVSMVRCQLETGRTHQIR 294
Query: 189 VHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWR 238
VH + +GH +VGD +Y + + + F RQALHA+KLGL+HP + W
Sbjct: 295 VHFESIGHPLVGDPVYYRATQRGQRPAIRVPLPVPFERQALHAFKLGLVHPVTGKTVSWT 354
Query: 239 INLPDDISKLI---TFSG 253
P+D+ LI FSG
Sbjct: 355 APPPEDLQALIDALDFSG 372
>gi|421747317|ref|ZP_16185040.1| RluA family pseudouridine synthase [Cupriavidus necator HPC(L)]
gi|409774071|gb|EKN55749.1| RluA family pseudouridine synthase [Cupriavidus necator HPC(L)]
Length = 389
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 153/251 (60%), Gaps = 10/251 (3%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
I ++P+ + + L ++YED +++++K AGLVVHPA GN SGT+ + LL
Sbjct: 97 IEVRPQAAPETLAFTPEPVPLQVVYEDAALLVIDKPAGLVVHPAAGNWSGTVLNGLLHRD 156
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG G
Sbjct: 157 PAAATLPRAGIVHRLDKETSGLMVVARTLTAQTDLVRQLQARTVKRTYLALVWGEAPDEG 216
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I+A I R+P R +M V + KP+ T++ L+ + + +S++ C L+TGRTHQIR
Sbjct: 217 TIDAPIGRDPRERTRMAVVHTASGKPSRTHFRTLSVAPLGRGCVSMVMCQLETGRTHQIR 276
Query: 189 VHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWR 238
VH + +GH ++GD +Y + + + F RQALHAY+LGL+HP + WR
Sbjct: 277 VHFESIGHPLLGDPVYHRATQRGQRPAIKAPLPVPFERQALHAYRLGLVHPVTGKAMSWR 336
Query: 239 INLPDDISKLI 249
PDD+ LI
Sbjct: 337 APAPDDLQALI 347
>gi|330817148|ref|YP_004360853.1| Pseudouridine synthase RluD [Burkholderia gladioli BSR3]
gi|327369541|gb|AEA60897.1| Pseudouridine synthase RluD [Burkholderia gladioli BSR3]
Length = 398
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 152/237 (64%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L I+YED +++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRL
Sbjct: 130 EPVPLSIVYEDEALVVIDKPAGLVVHPAAGNWSGTLLNGLLHRYGEAAAGLPRAGIVHRL 189
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG +G I+A I R+P R +
Sbjct: 190 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGRMPESGTIDAPIGRDPRERTR 249
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + T + + +S I C+L+TGRTHQIRVH GH ++GD +
Sbjct: 250 MAVVTGASGKPARTHFRCVDTVLWQNQPVSAIHCDLETGRTHQIRVHCAHTGHPLLGDPV 309
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGL+HP ++WR +PDDI++L G
Sbjct: 310 YGRARGKRSVAALPGGFARQALHAWRLGLVHPLTGRSMQWRCPVPDDIAELAAALGF 366
>gi|113867448|ref|YP_725937.1| pseudouridylate synthase, 23S RNA-specific [Ralstonia eutropha H16]
gi|113526224|emb|CAJ92569.1| pseudouridylate synthase, 23S RNA-specific [Ralstonia eutropha H16]
Length = 396
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 155/251 (61%), Gaps = 10/251 (3%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
I I+P+ + + + LD++YED+ ++++NK AGLVVHPA GN SGT+ + LL
Sbjct: 102 IEIQPQAAPESSAFSPEDVPLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRD 161
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P +PRAGIVHRLDK +SGLMVVA+S+ + LV QL+ V+R Y+A+VWG G
Sbjct: 162 PGAALLPRAGIVHRLDKETSGLMVVARSLTAQTDLVRQLQARTVKRTYIALVWGRTYDEG 221
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I+A I R+P R +M V + KP+ T++ LAT + + +S++ C L+TGRTHQIR
Sbjct: 222 TIDAPIGRDPRERTRMAVVHTASGKPSRTHFRTLATVPLGRGFVSMVMCKLETGRTHQIR 281
Query: 189 VHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNNLKLKWR 238
VH + +GH +VGD Y + + + + RQALHAY+LGL+HP ++ W
Sbjct: 282 VHFESIGHPLVGDPAYFRATQRGQRPAVRAPLPVPYERQALHAYQLGLVHPATGKRMSWT 341
Query: 239 INLPDDISKLI 249
P D+ LI
Sbjct: 342 AQPPQDLQALI 352
>gi|238027090|ref|YP_002911321.1| Pseudouridine synthase RluD [Burkholderia glumae BGR1]
gi|237876284|gb|ACR28617.1| Pseudouridine synthase RluD [Burkholderia glumae BGR1]
Length = 400
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 150/228 (65%), Gaps = 7/228 (3%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L I+YED +++++K AGLVVHPA GN +GTL + LL Y +PRAGIVHRL
Sbjct: 130 EPVPLAIVYEDEALVVIDKPAGLVVHPAAGNWNGTLLNGLLHRYGEAAAGLPRAGIVHRL 189
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++ + LV QL+ V+R+Y A+VWG +G I+A I R+P R +
Sbjct: 190 DKETSGLMVVARTLAAQTDLVRQLQARTVKRRYFALVWGRTPASGTIDAPIGRDPRERTR 249
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA T++ + + + + +S I+C+L+TGRTHQIRVH LGH ++GD +
Sbjct: 250 MAVVTGASGKPARTHFRTVDSVLWQNQPVSAIQCDLETGRTHQIRVHCAHLGHPLLGDPV 309
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
YG+ K + F RQALHA++LGL+HP ++WR +PDDI
Sbjct: 310 YGRARGKRSVAALPDGFARQALHAWRLGLVHPVTGRSMQWRCAVPDDI 357
>gi|377820971|ref|YP_004977342.1| RluA family pseudouridine synthase [Burkholderia sp. YI23]
gi|357935806|gb|AET89365.1| pseudouridine synthase, RluA family [Burkholderia sp. YI23]
Length = 410
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 154/237 (64%), Gaps = 7/237 (2%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRL 83
+ + L I+YED ++++NK AG+VVHPA GN SGTL + LL Y +PRAGIVHRL
Sbjct: 137 EAVPLHIVYEDETLVVINKPAGMVVHPAAGNWSGTLLNGLLHRYGEAAAGLPRAGIVHRL 196
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
DK +SGLMVVA+++++ LV QL+ V+R+Y+A VWG + G I+A I R+P R +
Sbjct: 197 DKETSGLMVVARTLQAQTDLVRQLQARTVKRRYVAFVWGNMRDEGTIDAPIGRDPRERTR 256
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V ++ + KPA T+++ + + + +S I C+L+TGRTHQIRVH GH ++GD +
Sbjct: 257 MAVVQSASGKPARTHFKTIDRTTWHGQPVSAIHCDLETGRTHQIRVHCAHAGHPLLGDPV 316
Query: 204 YGKKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG+ K + F RQALHA++LGLIHP + WR ++P+DI+ L G
Sbjct: 317 YGRARGKRSVTPLPNGFARQALHAWRLGLIHPATGKDVHWRADVPEDIAALAAELGF 373
>gi|456063251|ref|YP_007502221.1| RluA family pseudouridine synthase [beta proteobacterium CB]
gi|455440548|gb|AGG33486.1| RluA family pseudouridine synthase [beta proteobacterium CB]
Length = 313
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 161/256 (62%), Gaps = 4/256 (1%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G E I + P++ + I LD++Y D+ II+LNK AGLVVHPA GN +GTL
Sbjct: 38 LLRGSESIKVFPQEMPEQFAFAPEDIPLDVVYVDDSIIVLNKPAGLVVHPAAGNWTGTLL 97
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL +P L N+PRAGIVHRLDK++SGLMVVA++ + LV QL+ V R+YL++VW
Sbjct: 98 NGLLHRFPELKNLPRAGIVHRLDKDTSGLMVVARTDIAQTSLVRQLQERTVGRRYLSLVW 157
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G + A + R+ +R+KM + KPA T + RLA G ++ ++L+ C L+T
Sbjct: 158 GDAPSQGKVLATVGRDQRDRLKMAAG-SAQGKPAATLFRRLAKGAFSESPVALLECRLET 216
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKK---YSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
GRTHQIRVH++ G ++GD +Y K+ +KSL F+RQALHAY L L HP + W
Sbjct: 217 GRTHQIRVHLESQGFPLLGDPVYRKRTPGAAKSLPFSRQALHAYALSLQHPATQEVMTWF 276
Query: 239 INLPDDISKLITFSGI 254
P D +L+ G+
Sbjct: 277 RLPPQDFMELLPLVGM 292
>gi|171463620|ref|YP_001797733.1| pseudouridine synthase Rlu family protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193158|gb|ACB44119.1| pseudouridine synthase, RluA family [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 344
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 162/259 (62%), Gaps = 10/259 (3%)
Query: 2 IISGYELIIIKPKK---NFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSG 58
++ G E I + P++ F N + I LD++YED +II++NK GLVVHPA GN SG
Sbjct: 71 LLRGGESIKVFPQEMPEQFAFNPED---IPLDVVYEDGDIIVINKPPGLVVHPAAGNWSG 127
Query: 59 TLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
TL + LL YP L PRAGIVHRLDK++SGLMVVA++ ++ LV QL+ V R+YLA
Sbjct: 128 TLLNGLLFRYPELKMFPRAGIVHRLDKDTSGLMVVARTSQAQTSLVRQLQDRTVGRRYLA 187
Query: 119 MVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
VWG G + A++ R+ +R+KM KPA T + RL+ G++ + ++L+ C
Sbjct: 188 WVWGDAPSQGKVLASVGRDQRDRLKMAAGSP-QGKPAATLFRRLSKGLVQETPVTLLECR 246
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKY---SKSLIFNRQALHAYKLGLIHPKNNLKL 235
L+TGRTHQIRVH + LG +VGD +Y KK + +L F RQALHA+ L L HP N +
Sbjct: 247 LETGRTHQIRVHFESLGFPLVGDPVYRKKTPGAANNLEFKRQALHAFALSLQHPARNEVM 306
Query: 236 KWRINLPDDISKLITFSGI 254
W P DI +L+ G+
Sbjct: 307 TWFRLPPQDILELLPQLGM 325
>gi|350553590|ref|ZP_08922759.1| pseudouridine synthase, RluA family [Thiorhodospira sibirica ATCC
700588]
gi|349790252|gb|EGZ44170.1| pseudouridine synthase, RluA family [Thiorhodospira sibirica ATCC
700588]
Length = 318
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 161/259 (62%), Gaps = 17/259 (6%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I G E II P+ N + I LD++YED +I++LNK AGLVVHPA G+ GTL
Sbjct: 55 LIGGEEAIICAPEPEVLDNPAQ--AITLDVVYEDAQILVLNKPAGLVVHPAPGHPDGTLV 112
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P L +PRAGIVHRLDK++SGLMVVA ++ ++ LV QL+ V+R+YLA+V
Sbjct: 113 NALLHHRPSLAQLPRAGIVHRLDKDTSGLMVVAATLPAHTELVRQLQARTVKREYLALVQ 172
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G ++A I R+P +R +M V + + +PA+T+Y R+A + +L+R L+T
Sbjct: 173 GELIAGGRVDAPIGRHPVDRKRMAVVEGMHGRPAITHY-RIAQRF---QGYTLLRVQLET 228
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKK--YSKS---------LIFNRQALHAYKLGLIHPK 230
GRTHQIRVHMQ + H IVGD +YG + Y S F RQALHA LGLIHP
Sbjct: 229 GRTHQIRVHMQHIRHPIVGDPVYGPRAHYGASHDPGVQEALRSFGRQALHATALGLIHPV 288
Query: 231 NNLKLKWRINLPDDISKLI 249
L W + L DD+ L+
Sbjct: 289 TGESLSWEVALADDLHSLL 307
>gi|253996250|ref|YP_003048314.1| RluA family pseudouridine synthase [Methylotenera mobilis JLW8]
gi|253982929|gb|ACT47787.1| pseudouridine synthase, RluA family [Methylotenera mobilis JLW8]
Length = 368
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/253 (46%), Positives = 165/253 (65%), Gaps = 22/253 (8%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ +KP+ F+ + I LDI+YED+ I+++NK AG+VVHPA GN GTL + LL
Sbjct: 74 VQVKPESRAFIAQD----IPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHA 129
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L +VPRAGIVHRLDK +SGL+VVAK++ + HLV QL+ V+R+Y A+VWG NG
Sbjct: 130 PQLHDVPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLWRNG 189
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
+++ + R+P +R KM + N KPA+T YE L + + +RCNL+TGRTHQIR
Sbjct: 190 VVDQPLGRDPRSRTKMAI--NRMGKPAITRYEILERFSVQ----TYLRCNLETGRTHQIR 243
Query: 189 VHMQWLGHGIVGDNLYG-------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLK 236
VHMQ L +VGD +YG + +++L F+RQALHA KLGL+HP N ++
Sbjct: 244 VHMQHLKAPLVGDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFME 303
Query: 237 WRINLPDDISKLI 249
W+I L DD+ L+
Sbjct: 304 WQIELADDMKVLL 316
>gi|297538120|ref|YP_003673889.1| RluA family pseudouridine synthase [Methylotenera versatilis 301]
gi|297257467|gb|ADI29312.1| pseudouridine synthase, RluA family [Methylotenera versatilis 301]
Length = 363
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 160/235 (68%), Gaps = 18/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI++ED+ III+NK AG+VVHPA GN SGTL + LL P L +VPRAGIVHRLDK+
Sbjct: 88 IPLDIVFEDDHIIIINKPAGMVVHPAAGNWSGTLLNALLFHAPELKDVPRAGIVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG++VVAK++ + +LV QL+ V+R+Y A+VWG NG+++ AI R+P +R KM +
Sbjct: 148 TSGILVVAKTLAAQTNLVRQLQARTVKREYRAIVWGQLWRNGVVDQAIGRDPRSRTKMAL 207
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
N KPA+T YE L + + +RCNL+TGRTHQIRVHMQ L IVGD +YG
Sbjct: 208 --NRMGKPAITRYEILERFSVQ----TYLRCNLETGRTHQIRVHMQSLKAPIVGDPVYGF 261
Query: 206 ------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ +++L FNRQALHA KLGL+HP N ++W+I L DD+ L+
Sbjct: 262 RGIIPIRVMTQTLRDEVSQFNRQALHAIKLGLMHPATNEFMEWQIELADDMKALL 316
>gi|253999417|ref|YP_003051480.1| RluA family pseudouridine synthase [Methylovorus glucosetrophus
SIP3-4]
gi|253986096|gb|ACT50953.1| pseudouridine synthase, RluA family [Methylovorus glucosetrophus
SIP3-4]
Length = 353
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 161/249 (64%), Gaps = 22/249 (8%)
Query: 13 PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI 72
P ++ F E + I LD+ YED I+++NK AGLVVHPA GN SGTL + LL P +
Sbjct: 73 PDEHAF----EAEDIPLDVQYEDEHILVINKPAGLVVHPAAGNWSGTLLNALLHHAPVVK 128
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINA 132
++PRAGIVHRLDK++SGL+VVAK++ + LV QL+ V+R+Y A+VWG NG I+
Sbjct: 129 DLPRAGIVHRLDKDTSGLLVVAKTLTAQTSLVRQLQARTVKREYRAIVWGQVWQNGRIDQ 188
Query: 133 AIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQ 192
I R+PH R KM + N N KPA+T YE L ++ + +RCNL+TGRTHQIRVHMQ
Sbjct: 189 PIGRHPHARTKMAI--NRNGKPAVTRYEVLERFAVH----TYLRCNLETGRTHQIRVHMQ 242
Query: 193 WLGHGIVGDNLYG----------KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRIN 240
L +VGD +YG ++ + I F RQALHA KLGLIHP + ++W++
Sbjct: 243 HLKAPLVGDPVYGLGGIVPLRMMPQHLRDTILNFGRQALHAVKLGLIHPASGEFMEWQVE 302
Query: 241 LPDDISKLI 249
LP D+ L+
Sbjct: 303 LPADMKSLL 311
>gi|313201439|ref|YP_004040097.1| RluA family pseudouridine synthase [Methylovorus sp. MP688]
gi|312440755|gb|ADQ84861.1| pseudouridine synthase, RluA family [Methylovorus sp. MP688]
Length = 354
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/249 (47%), Positives = 161/249 (64%), Gaps = 22/249 (8%)
Query: 13 PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI 72
P ++ F E + I LD+ YED I+++NK AGLVVHPA GN SGTL + LL P +
Sbjct: 73 PDEHAF----EAEDIPLDVQYEDEHILVINKPAGLVVHPAAGNWSGTLLNALLHHAPVVK 128
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINA 132
++PRAGIVHRLDK++SGL+VVAK++ + LV QL+ V+R+Y A+VWG NG I+
Sbjct: 129 DLPRAGIVHRLDKDTSGLLVVAKTLTAQTSLVRQLQARTVKREYRAIVWGQVWQNGRIDQ 188
Query: 133 AIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQ 192
I R+PH R KM + N N KPA+T YE L ++ + +RCNL+TGRTHQIRVHMQ
Sbjct: 189 PIGRHPHARTKMAI--NRNGKPAVTRYEVLERFAVH----TYLRCNLETGRTHQIRVHMQ 242
Query: 193 WLGHGIVGDNLYG----------KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRIN 240
L +VGD +YG ++ + + F RQALHA KLGLIHP + ++W++
Sbjct: 243 HLKAPLVGDPVYGLGGIVPLRMMPQHLRDTVLNFGRQALHAVKLGLIHPASGEFMEWQVE 302
Query: 241 LPDDISKLI 249
LP D+ L+
Sbjct: 303 LPADMKSLL 311
>gi|74316828|ref|YP_314568.1| ribosomal large subunit pseudouridine synthase D [Thiobacillus
denitrificans ATCC 25259]
gi|74056323|gb|AAZ96763.1| pseudouridine synthase, RluD [Thiobacillus denitrificans ATCC
25259]
Length = 318
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/252 (44%), Positives = 161/252 (63%), Gaps = 10/252 (3%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M +SG E + ++ + + + I LD++YED+ ++++NK GLVVHP GN GTL
Sbjct: 63 MKVSGGESVRVQVEPDPGATPDAPEAIPLDVVYEDSMLLVINKPVGLVVHPGSGNRDGTL 122
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P + +PRAGIVHRLDK++SGL+VVAK+++++ LV QL+ V+R+YLA+V
Sbjct: 123 LNALLHRVPQVAELPRAGIVHRLDKDTSGLLVVAKTLRAHTDLVRQLQARTVKREYLALV 182
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNL 179
+G G ++A + R+PHNR K TV + K A+T+Y+ ++ + I+L+RC L
Sbjct: 183 YGEVDRGGTVDAPLARDPHNRTKRTV--HSLGKEAVTHYD-----VVERFPGITLLRCKL 235
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL--IFNRQALHAYKLGLIHPKNNLKLKW 237
+TGRTHQIRVHMQ +GH +VGD +Y L F RQALHA KLGLIHP + W
Sbjct: 236 ETGRTHQIRVHMQHVGHPLVGDTVYSASRRSHLKIPFPRQALHAEKLGLIHPVTGEFVHW 295
Query: 238 RINLPDDISKLI 249
LP D L+
Sbjct: 296 ECPLPPDFGSLL 307
>gi|372489157|ref|YP_005028722.1| RluA family pseudouridine synthase [Dechlorosoma suillum PS]
gi|359355710|gb|AEV26881.1| pseudouridine synthase, RluA family [Dechlorosoma suillum PS]
Length = 375
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 161/252 (63%), Gaps = 5/252 (1%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E + ++ ++ L + I ++YED I+I+NK AGLVVHP GN SGTL + L
Sbjct: 78 GGEFLNLEEVQDEKLAAETPEDIPFPVVYEDEAILIINKPAGLVVHPGSGNWSGTLLNAL 137
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK++SGLMVVAK++++ LV QL+ V+R+Y A++ G
Sbjct: 138 LHHTPQLAQVPRAGIVHRLDKDTSGLMVVAKTLEAQTDLVRQLQARTVKREYRALLVGYL 197
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
NG ++A I R+P R KM V ++ N + A T+Y T + + + +L++C L+TGRT
Sbjct: 198 NRNGTVDAPIGRHPTQRTKMAVVQH-NGREARTHY----TVLEHFERCTLVQCRLETGRT 252
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVHM LG +VGD +Y K + + F RQALHAY+LGLIHP ++W +PDD
Sbjct: 253 HQIRVHMAALGFPLVGDAVYNKGKTAGVRFPRQALHAYRLGLIHPLTREPMQWDAPVPDD 312
Query: 245 ISKLITFSGIKW 256
++ L+ +W
Sbjct: 313 MAALLKTLRSEW 324
>gi|413962525|ref|ZP_11401752.1| RluA family pseudouridine synthase [Burkholderia sp. SJ98]
gi|413928357|gb|EKS67645.1| RluA family pseudouridine synthase [Burkholderia sp. SJ98]
Length = 344
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 150/235 (63%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRLDK 85
+ L I+YED ++++NK AG+VVHPA GN SGTL + LL Y +PRAGIVHRLDK
Sbjct: 72 VPLHIVYEDEALVVINKPAGMVVHPAAGNWSGTLLNGLLHRYGDAAAGLPRAGIVHRLDK 131
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
+SGLMVVA+++++ LV QL+ V+R+Y+A VWG G I+A I R+P R +M
Sbjct: 132 ETSGLMVVARTLEAQTDLVRQLQARTVKRRYVAFVWGNMPDEGTIDAPIGRDPRERTRMA 191
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V K + KPA T++ + + + +S I C+L+TGRTHQIRVH + H ++GD +YG
Sbjct: 192 VVKTASGKPARTHFRTIDRTTWHGQPVSAIHCDLETGRTHQIRVHCAHIQHPLLGDPVYG 251
Query: 206 KKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
K + F RQALHA++LGLIHP ++ WR ++P+DI+ L G
Sbjct: 252 HARGKRSVKPLPNEFARQALHAWRLGLIHPATGKEVHWRADVPEDIATLAAELGF 306
>gi|71907236|ref|YP_284823.1| ribosomal large subunit pseudouridine synthase D [Dechloromonas
aromatica RCB]
gi|71846857|gb|AAZ46353.1| ribosomal large subunit pseudouridine synthase D [Dechloromonas
aromatica RCB]
Length = 318
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 162/250 (64%), Gaps = 8/250 (3%)
Query: 2 IISGYELIIIKPKKNFFLNKTE-KKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
++ G +L++ +P+ N+ E + I LD+++ED ++++NK AGLVVHP GN SGTL
Sbjct: 69 MMGGEKLLVSEPED--VRNQPELPEDIPLDVVFEDETLLVINKPAGLVVHPGSGNWSGTL 126
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P + VPRAGIVHRLDK++SGL+VVAK++++ LV QL+ V+R YLA+
Sbjct: 127 MNALLHHVPGIEVVPRAGIVHRLDKDTSGLLVVAKTLEAQTDLVRQLQARTVRRIYLALA 186
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMT-VSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
G K G +N I R+P RIKM V +N KPA+T L + + + C+L
Sbjct: 187 AGAMKHEGTVNEPIGRHPSQRIKMAIVPENRGGKPAITNIRILEAFT----YTTFVECSL 242
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
+TGRTHQIRVHM + H +VGD +YGK K F RQALHA +LGL+HP LK++W +
Sbjct: 243 ETGRTHQIRVHMAAIHHPLVGDQVYGKHNPKLPEFPRQALHATRLGLVHPLTGLKMQWEV 302
Query: 240 NLPDDISKLI 249
+P+D+ L+
Sbjct: 303 PMPEDMRNLL 312
>gi|119897309|ref|YP_932522.1| pseudouridylate synthase [Azoarcus sp. BH72]
gi|119669722|emb|CAL93635.1| pseudouridylate synthase [Azoarcus sp. BH72]
Length = 324
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 163/258 (63%), Gaps = 19/258 (7%)
Query: 4 SGYELIIIK----PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGT 59
G EL++ P++ F E + I LD++YED I++++K AGLVVHP GN SGT
Sbjct: 73 GGEELVVAGLPPLPEQLAF----EPEAIPLDVVYEDASILVIDKPAGLVVHPGSGNWSGT 128
Query: 60 LFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
L + LL P L +PRAGIVHRLDK+++GLMVVAK++++ LV QL+ V R Y A+
Sbjct: 129 LLNALLHHAPALAGLPRAGIVHRLDKDTTGLMVVAKTLEAQTDLVRQLQQRTVARHYYAL 188
Query: 120 VWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKH-ISLIRCN 178
V+G +G I+A I R+P R +M V +PALT Y + + H ++L+ C
Sbjct: 189 VYGDIASDGEIDADIDRHPVQRTRMAVVP--GGRPALTRY-----AVRQRLHGLTLVECR 241
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYG-KKYSKSLI--FNRQALHAYKLGLIHPKNNLKL 235
L+TGRTHQIRVHM LGH +VGD +YG ++ + S + F+RQALHA++LGL+HP + +
Sbjct: 242 LQTGRTHQIRVHMAHLGHPLVGDPVYGPRRVTDSRVDGFSRQALHAFRLGLLHPASGEDM 301
Query: 236 KWRINLPDDISKLITFSG 253
W LP D + L+ G
Sbjct: 302 VWSAPLPADFAALLEKVG 319
>gi|350543796|ref|ZP_08913485.1| unnamed protein product [Candidatus Burkholderia kirkii UZHbot1]
gi|350528416|emb|CCD35685.1| unnamed protein product [Candidatus Burkholderia kirkii UZHbot1]
Length = 379
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 148/235 (62%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY-PFLINVPRAGIVHRLDK 85
+ L I+YED ++++NK AG+VVHPA GN SGTL + LL Y +PRAGIVHRLDK
Sbjct: 107 VPLHIVYEDETLVVINKPAGMVVHPAAGNWSGTLLNGLLHRYGEAAAGLPRAGIVHRLDK 166
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
+SGLMVVA+++++ LV QL+ V+R+Y+A VWG G I+A I R+P R +M
Sbjct: 167 ETSGLMVVARTLEAQTDLVRQLQARTVKRRYVAFVWGAMPDEGTIDAPIGRDPRERTRMA 226
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V ++ K A T + + + + +S I C+L+TGRTHQIRVH H ++GD LYG
Sbjct: 227 VVRSAAGKAARTQFRTIHRTTWHGQPVSAIHCDLETGRTHQIRVHCAHARHPLLGDPLYG 286
Query: 206 KKYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
+ K + F RQALHA++LGLIHP + WR ++P+D++ L G+
Sbjct: 287 RARGKRSVTPLPNGFARQALHAWRLGLIHPATGKDVHWRADVPEDMAALAAELGL 341
>gi|294669553|ref|ZP_06734620.1| hypothetical protein NEIELOOT_01452 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308466|gb|EFE49709.1| hypothetical protein NEIELOOT_01452 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 372
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 163/259 (62%), Gaps = 18/259 (6%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I G +L + + N L T + + LDIIYED+ +I+LNK AGLVVHPA GN SGTL
Sbjct: 79 LIGGEKLAVQIRESNETLAFT-PEAMDLDIIYEDDSVIVLNKPAGLVVHPAAGNWSGTLL 137
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P L N+PRAGIVHRLDK++SGLMVVAK++ + HLV QL+ V+R Y A+
Sbjct: 138 NGLLAHCPALQNIPRAGIVHRLDKDTSGLMVVAKTLPAQNHLVQQLQTRTVKRIYRAVAD 197
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
GI +G I I R+PHNR+KM V K F K A+T+ + L + H S I C L+T
Sbjct: 198 GIVPFDGKIETQIGRDPHNRVKMAVVK-FGGKEAVTHVKVLER---YQAH-SYIECALET 252
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKN 231
GRTHQIRVHM+ H + GD +YG K K+L RQALHAY+L IHP+N
Sbjct: 253 GRTHQIRVHMREAKHPLAGDPVYGNPRHPCSDTVKTEIKALA--RQALHAYRLSFIHPQN 310
Query: 232 NLKLKWRINLPDDISKLIT 250
++++ LP DI L++
Sbjct: 311 GGEMQFEAPLPQDIYHLLS 329
>gi|126032015|gb|ABN71573.1| putative pseudouridylate synthase [uncultured bacterium]
Length = 353
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 160/250 (64%), Gaps = 7/250 (2%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
+++ + P+ + + + L++I+ED+ I++LNK LVVHPA G+ SGTL + LL
Sbjct: 88 DVVKVTPQPAPDAAAYKPEPMPLEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLA 147
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
P LI+VPRAGIVHRLD ++SGLMVVAK++ + LV QL+ V R+Y A+V G+P
Sbjct: 148 YAPTLIDVPRAGIVHRLDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQ 207
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
G+I+AAI R+P N ++ VS AKPA T+Y L + IS + C L+TGRTHQ
Sbjct: 208 RGVIDAAIGRDPRNPLRFKVSTTEAAKPARTHYATLDSTKNAGADISWLACRLETGRTHQ 267
Query: 187 IRVHMQWLGHGIVGDNLY-------GKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
IRVH++ +GH ++GD +Y G+ ++ F+RQALHA +L L HP + +L W
Sbjct: 268 IRVHLEHVGHPLIGDPVYRRRLPPRGEPAARWKEFDRQALHACRLALDHPVSRQRLNWFH 327
Query: 240 NLPDDISKLI 249
+ D+++L+
Sbjct: 328 SPAADLAQLM 337
>gi|348617993|ref|ZP_08884526.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816698|emb|CCD29184.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 350
Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 157/250 (62%), Gaps = 4/250 (1%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
++I P++ + + + LDI+YED ++I++K+AG VVHPA GN GTL + +L Y
Sbjct: 78 VVIHPERAPDVRAFTAEPVPLDILYEDEALVIIHKAAGYVVHPAAGNWGGTLLNGVLHRY 137
Query: 69 -PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL 126
+PRAGIVHRLDK++SG+MV+A+++ +Y HL+ QL+ ++R+YLA G + +
Sbjct: 138 GQAAAGIPRAGIVHRLDKDTSGVMVIARTLTAYTHLIRQLQARTMKRRYLAFALGTLARQ 197
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
G I+A + R+P NRI+ V KPA T+Y LA IS ++C+L+TGRTHQ
Sbjct: 198 EGAIDAPLGRHPRNRIQHAVVTGAAGKPARTHYRVLAMANKAGPSISAVQCDLETGRTHQ 257
Query: 187 IRVHMQWLGHGIVGDNLYGKKYSK--SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
IRVH+ LGH ++GD +YG ++ + F RQALHA +L L HP + W LP+D
Sbjct: 258 IRVHLAHLGHPLIGDPVYGDARARHCAASFTRQALHAVRLELTHPLTGQRCIWSAPLPED 317
Query: 245 ISKLITFSGI 254
++ L G+
Sbjct: 318 MAMLAQTLGL 327
>gi|349574695|ref|ZP_08886632.1| ribosomal large subunit pseudouridine synthase D [Neisseria
shayeganii 871]
gi|348013720|gb|EGY52627.1| ribosomal large subunit pseudouridine synthase D [Neisseria
shayeganii 871]
Length = 374
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 153/234 (65%), Gaps = 13/234 (5%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + LDI+YED+ +++LNK AGLVVHPA GN SGTL + LL P L VPRAGIVHRLD
Sbjct: 103 EAMDLDIVYEDDSVMVLNKPAGLVVHPAAGNWSGTLLNGLLAHCPALAAVPRAGIVHRLD 162
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K++SGLMVVAK++ + HLV QL+ V+R Y A+ G+ +G I+ I R+PHNR+KM
Sbjct: 163 KDTSGLMVVAKTLPAQTHLVQQLQARTVKRIYRAVADGVVPFDGKIDTLIGRDPHNRLKM 222
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V K F KPA+T+ + L + H S I C L+TGRTHQIRVHM+ H + GD +Y
Sbjct: 223 AVVK-FGGKPAVTHVKVLER---YRAH-SYIECALETGRTHQIRVHMREARHPLAGDPVY 277
Query: 205 G------KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
G K+++ RQALHAY+L +HP++ ++ + LP+D L++
Sbjct: 278 GNPRHPASDEVKAVVKGLARQALHAYRLSFVHPQSGEEMSFEAPLPEDFYHLLS 331
>gi|145589104|ref|YP_001155701.1| RluA family pseudouridine synthase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047510|gb|ABP34137.1| ribosomal large subunit pseudouridine synthase D [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 318
Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 159/256 (62%), Gaps = 4/256 (1%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G E + + P++ + I L+++YED+ II++NK GLVVHPA GN SGTL
Sbjct: 43 LLRGGESVKVFPQEMPEQFAFSPENIPLEVVYEDDSIIVINKPPGLVVHPAAGNWSGTLL 102
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL +P L ++PRAGIVHRLDK++SGLMVVA++ + LV QL+ V R+YLA VW
Sbjct: 103 NGLLHRFPELKSLPRAGIVHRLDKDTSGLMVVARTAHAQTALVRQLQERTVGRRYLAWVW 162
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G + A++ R+ +R+KM KPA T + R+A G + ++L+ C L+T
Sbjct: 163 GDAPSQGKVLASVGRDQRDRLKMAAGSP-QGKPAATLFRRIAKGNVENAPVALLECRLET 221
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKKY---SKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
GRTHQIRVH++ LG +VGD +Y KK +K+L F+RQALHA+ L L HP W
Sbjct: 222 GRTHQIRVHLESLGFPLVGDPVYRKKAPGVAKALSFDRQALHAFALSLQHPVTQELQTWF 281
Query: 239 INLPDDISKLITFSGI 254
P D+ L+ G+
Sbjct: 282 RLPPVDLINLLPQVGM 297
>gi|339484432|ref|YP_004696218.1| pseudouridine synthase, RluA family [Nitrosomonas sp. Is79A3]
gi|338806577|gb|AEJ02819.1| pseudouridine synthase, RluA family [Nitrosomonas sp. Is79A3]
Length = 343
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/253 (46%), Positives = 159/253 (62%), Gaps = 14/253 (5%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I P+ + + I L+II+ED+ III+NK AGLV HP GN GTL + L
Sbjct: 84 GNELIQISPQDTIVESTHVAEDINLNIIHEDDAIIIVNKPAGLVTHPGNGNWQGTLLNAL 143
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK++SGL+VVAK+I++ +LV QL+ H V+R YLA+V G
Sbjct: 144 LHHAPQLEVVPRAGIVHRLDKDTSGLLVVAKTIEAQTNLVRQLQQHTVKRDYLALVLGEV 203
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++A I R+P +R KM V+ K A T+Y+ I N +L++C+L+TGRT
Sbjct: 204 TQAGSVDAPIGRHPIHRTKMAVTT--KGKSARTHYQV----IENFTGCTLLQCSLETGRT 257
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKS--------LIFNRQALHAYKLGLIHPKNNLKLK 236
HQIRVH+ +GH + GD +YG K K+ + F RQALHA KL L HP+ L
Sbjct: 258 HQIRVHLSSIGHSLAGDPVYGGKPGKTGQIIRQLLVSFPRQALHAQKLALTHPQTEQILG 317
Query: 237 WRINLPDDISKLI 249
W + P+D++ L+
Sbjct: 318 WEADAPEDLNNLL 330
>gi|237653787|ref|YP_002890101.1| pseudouridine synthase [Thauera sp. MZ1T]
gi|237625034|gb|ACR01724.1| pseudouridine synthase, RluA family [Thauera sp. MZ1T]
Length = 327
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 151/253 (59%), Gaps = 15/253 (5%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E + I + + I L ++YED ++++++K GLVVHP GN SGTL +
Sbjct: 76 VCGGECVEIDAPPPPEVTAALPEDIPLAVVYEDEDLLVIDKPVGLVVHPGSGNWSGTLLN 135
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L VPRAGIVHRLDK++SGLMVVAK++ + LV QL+ V R Y A+V G
Sbjct: 136 ALLHRNPALAGVPRAGIVHRLDKDTSGLMVVAKTLAAQTELVRQLQARTVGRHYRALVQG 195
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNL 179
G ++A I R+P R +M V N +PA+T+Y ER +L+ C L
Sbjct: 196 ALTAGGTVDAPIGRHPTQRTRMAVVG--NGRPAVTHYRVTERF-------PRATLVECRL 246
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL---IFNRQALHAYKLGLIHPKNNLKLK 236
+TGRTHQIRVHM +GH +VGD LYG + + F RQALHA++LGL HP++ ++
Sbjct: 247 ETGRTHQIRVHMAHIGHALVGDPLYGARRCGDVRLDAFPRQALHAFRLGLTHPRSGEAMR 306
Query: 237 WRINLPDDISKLI 249
W + L D + L+
Sbjct: 307 WEVPLAADFAALL 319
>gi|224825454|ref|ZP_03698559.1| pseudouridine synthase, RluA family [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602375|gb|EEG08553.1| pseudouridine synthase, RluA family [Pseudogulbenkiania
ferrooxidans 2002]
Length = 362
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 150/239 (62%), Gaps = 17/239 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I+L I+YED+ III+NK AGLVVHPA GN +GTL + LL P L +VPRAGIVHRLD
Sbjct: 96 EAIELPIVYEDDHIIIINKPAGLVVHPAAGNWTGTLLNGLLHHCPALTHVPRAGIVHRLD 155
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVAK+I + LV Q++ V+R Y A+ G+ +G I I R+PHNR++M
Sbjct: 156 KETSGLMVVAKTIPAQTELVRQMQARSVKRIYRAIADGVVPFDGKIETLIGRDPHNRMRM 215
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V K F K A+T+ LAT + S I C L+TGRTHQIRVHM+ H + GD LY
Sbjct: 216 AVVK-FGGKQAITHVRVLATFPSH----SYIECRLETGRTHQIRVHMREARHPLAGDPLY 270
Query: 205 G----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSG 253
G ++ K+L RQALHAY L L HP ++ W+ LPDD+ L+ G
Sbjct: 271 GNPRHTMPDEIEEAVKAL--GRQALHAYSLTLTHPATGKEMTWKAKLPDDMKHLLAVLG 327
>gi|347539726|ref|YP_004847151.1| ribosomal large subunit pseudouridine synthase D
[Pseudogulbenkiania sp. NH8B]
gi|345642904|dbj|BAK76737.1| ribosomal large subunit pseudouridine synthase D
[Pseudogulbenkiania sp. NH8B]
Length = 362
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 150/239 (62%), Gaps = 17/239 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ ++L I+YED+ III+NK AGLVVHPA GN +GTL + LL P L +VPRAGIVHRLD
Sbjct: 96 EAMELPIVYEDDHIIIINKPAGLVVHPAAGNWTGTLLNGLLHHCPALTHVPRAGIVHRLD 155
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGLMVVAK+I + LV Q++ V+R Y A+ G+ +G I I R+PHNR++M
Sbjct: 156 KETSGLMVVAKTIPAQTELVRQMQARSVKRIYRAIADGVVPFDGKIETLIGRDPHNRMRM 215
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V K F K A+T+ LAT + S I C L+TGRTHQIRVHM+ H + GD LY
Sbjct: 216 AVVK-FGGKQAITHVRVLATFPSH----SYIECRLETGRTHQIRVHMREARHPLAGDPLY 270
Query: 205 G----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSG 253
G ++ K+L RQALHAY L L HP ++ W+ LPDD+ L+ G
Sbjct: 271 GNPRHTMPDEVEEAVKAL--GRQALHAYSLSLTHPATGQEMTWKAKLPDDMKHLLAVLG 327
>gi|429745053|ref|ZP_19278502.1| ribosomal large subunit pseudouridine synthase D [Neisseria sp.
oral taxon 020 str. F0370]
gi|429161439|gb|EKY03840.1| ribosomal large subunit pseudouridine synthase D [Neisseria sp.
oral taxon 020 str. F0370]
Length = 372
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 160/257 (62%), Gaps = 14/257 (5%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I G +L + + N L T + + LDI+YED+ +I+LNK AGLVVHPA GN SGTL
Sbjct: 79 LIGGEKLAVQVQESNETLAFTPEP-MDLDIVYEDDSVIVLNKPAGLVVHPAAGNWSGTLL 137
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P L NVPRAGIVHRLDK++SGLMVVAK++ + HLV Q++ V+R Y A+
Sbjct: 138 NGLLAHCPALQNVPRAGIVHRLDKDTSGLMVVAKTLSAQNHLVKQMQERTVKRVYRAVAD 197
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
GI +G I I R+PHNR+KM V K F K A+T+ + L + H S I C L+T
Sbjct: 198 GIVPFDGKIETQIGRDPHNRVKMAVVK-FGGKEAVTHVKVLER---YQAH-SYIECQLET 252
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI--FNRQALHAYKLGLIHPKNNL 233
GRTHQIRVHM+ H + GD +YG KS + RQALHAY+L +HP++
Sbjct: 253 GRTHQIRVHMREANHPLSGDPVYGNPRHACSDTVKSTVRQLGRQALHAYRLSFVHPQSGE 312
Query: 234 KLKWRINLPDDISKLIT 250
+ + LP DI L++
Sbjct: 313 TVHFEAPLPADIYHLLS 329
>gi|56478105|ref|YP_159694.1| ribosomal large subunit pseudouridine synthase D [Aromatoleum
aromaticum EbN1]
gi|56314148|emb|CAI08793.1| ribosomal large subunit pseudouridine synthase D [Aromatoleum
aromaticum EbN1]
Length = 306
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 149/230 (64%), Gaps = 15/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L +++ED EI++++K GLVVHP GN SGTL + LL P L VPRAGIVHRLDK+
Sbjct: 78 IPLVVVHEDEEILVIDKPVGLVVHPGSGNWSGTLLNALLHHAPQLAAVPRAGIVHRLDKD 137
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVAK+++S LV QL+ V+R YLA+V GM+ A I R+P R +M V
Sbjct: 138 TSGLLVVAKTLESQTALVRQLQARTVRRHYLALVHRAVAGAGMVEAPIGRHPTQRTRMAV 197
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
++ A A+T Y ER A ++L+ C L+TGRTHQIRVHM ++GH +VGD
Sbjct: 198 VQSGRA--AVTRYRPRERFA-------RVTLVECQLETGRTHQIRVHMAYIGHPLVGDAT 248
Query: 204 YGKKYSKSLI---FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG + S S + F RQALHA++LGL+HP + ++ W LP+D L+
Sbjct: 249 YGLRRSGSPVLDAFARQALHAFRLGLLHPASGAEMTWESPLPEDFEALLA 298
>gi|419798115|ref|ZP_14323546.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
gi|385696008|gb|EIG26532.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
Length = 374
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 156/252 (61%), Gaps = 18/252 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + K E I LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL
Sbjct: 87 VTVRPSEENLAFKPE--AIDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC 144
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ GI +G
Sbjct: 145 PELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDG 204
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TGRTHQIR
Sbjct: 205 KIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIR 259
Query: 189 VHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
VHM+ H + D +YG K+ KSL RQALHAY+L +HPK + +
Sbjct: 260 VHMREANHPLAADPVYGNLRHPCSEPVKEAVKSL-GARQALHAYRLSFVHPKTGETVSFE 318
Query: 239 INLPDDISKLIT 250
+PDDI L++
Sbjct: 319 APIPDDIYHLLS 330
>gi|422110409|ref|ZP_16380432.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378792|emb|CBX22618.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 374
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 156/252 (61%), Gaps = 18/252 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ I+P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL
Sbjct: 87 VSIRPSAEYSAFAPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC 144
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ GI +G
Sbjct: 145 PELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDG 204
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TGRTHQIR
Sbjct: 205 KIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIR 259
Query: 189 VHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
VHM+ H + GD +YG K+ KSL RQALHAY+L +HPK + +
Sbjct: 260 VHMREANHPLAGDPVYGNLRHPCSEPVKEAVKSL-GARQALHAYRLSFVHPKTGETVSFE 318
Query: 239 INLPDDISKLIT 250
+PDD+ L++
Sbjct: 319 APIPDDMYHLLS 330
>gi|257095460|ref|YP_003169101.1| RluA family pseudouridine synthase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047984|gb|ACV37172.1| pseudouridine synthase, RluA family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 375
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 153/248 (61%), Gaps = 9/248 (3%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I + + + + I L I++ED+ +I+L+K AGLVVHP GN GTL + L
Sbjct: 83 GGETIALTESTDERAEASAPEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGL 142
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK+++GLMVVAK++++ LV QL+ V+R Y A+V GI
Sbjct: 143 LHHAPQLARVPRAGIVHRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIV 202
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+ G+++A I R+P R +M V +PA T+Y L + +LI C L+TGRT
Sbjct: 203 EGAGIVDAPIGRHPTVRTRMAVVS--GGRPARTHYRVLERFVA----CTLIECALETGRT 256
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSK---SLIFNRQALHAYKLGLIHPKNNLKLKWRINL 241
HQIRVHM + H +VGD +YG S+ +F RQALHA +L L+HP + + WR +
Sbjct: 257 HQIRVHMTSIAHPLVGDPIYGGGASRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGV 316
Query: 242 PDDISKLI 249
P D++ LI
Sbjct: 317 PADMAALI 324
>gi|340363207|ref|ZP_08685553.1| ribosomal large subunit pseudouridine synthase D [Neisseria macacae
ATCC 33926]
gi|339886401|gb|EGQ76055.1| ribosomal large subunit pseudouridine synthase D [Neisseria macacae
ATCC 33926]
Length = 374
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 156/252 (61%), Gaps = 18/252 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + K E + LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL
Sbjct: 87 VTVRPSEENLAFKPE--AMDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC 144
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ GI +G
Sbjct: 145 PELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDG 204
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TGRTHQIR
Sbjct: 205 KIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIR 259
Query: 189 VHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
VHM+ H + D +YG K+ KSL RQALHAY+L +HPK + +
Sbjct: 260 VHMREANHPLAADPVYGNLRHPCSEPVKEAVKSL-GARQALHAYRLSFVHPKTGETVSFE 318
Query: 239 INLPDDISKLIT 250
+PDDI L++
Sbjct: 319 APIPDDIYHLLS 330
>gi|358638138|dbj|BAL25435.1| ribosomal large subunit pseudouridine synthase D [Azoarcus sp.
KH32C]
Length = 329
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 152/231 (65%), Gaps = 15/231 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LD+++ED+ ++++NK GLVVHP GN SGTL + LL P + +VPRAGIVHRLDK+
Sbjct: 101 IPLDVVFEDDTLLVINKPVGLVVHPGSGNWSGTLLNALLHHAPAVASVPRAGIVHRLDKD 160
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVAK++++ LV QL+ V+R YLA+V + G+++ I R+P NR +M V
Sbjct: 161 TSGLLVVAKTLEAQTDLVRQLQARTVKRHYLALVHRLITGPGIVDEPIGRHPTNRTRMAV 220
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + +PA+T Y E+ A +L+ C L+TGRTHQIRVHM +GH +VGD
Sbjct: 221 VQ--SGRPAVTRYFVREQFARS-------TLVECQLETGRTHQIRVHMAHIGHPLVGDAT 271
Query: 204 YGKKYSKSLI---FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG + + I F RQALHAY+LGLIHP + ++ W+ N P D + LI
Sbjct: 272 YGLRRCGNPILDGFPRQALHAYRLGLIHPSSGDEMSWQANPPTDFADLIAM 322
>gi|345874807|ref|ZP_08826606.1| ribosomal large subunit pseudouridine synthase D [Neisseria weaveri
LMG 5135]
gi|417957181|ref|ZP_12600107.1| ribosomal large subunit pseudouridine synthase D [Neisseria weaveri
ATCC 51223]
gi|343968761|gb|EGV36984.1| ribosomal large subunit pseudouridine synthase D [Neisseria weaveri
ATCC 51223]
gi|343969912|gb|EGV38115.1| ribosomal large subunit pseudouridine synthase D [Neisseria weaveri
LMG 5135]
Length = 372
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 160/258 (62%), Gaps = 16/258 (6%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ ++++NK AGLVVHPA GN +GTL
Sbjct: 79 LIGGEDITVTVRPSEENLAFTPE--AMDLDIVYEDDTVLVINKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK++SGLMVVAK++ + HLV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPSLSQVPRAGIVHRLDKDTSGLMVVAKTLPAQNHLVQQLQARTVKRIYRAIA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETLIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI--FNRQALHAYKLGLIHPKNN 232
TGRTHQIRVHM+ H + D +YG + KS + NRQALHAY+L +HP
Sbjct: 252 TGRTHQIRVHMREANHPLAADPIYGNPRHPCSETVKSEVKQLNRQALHAYRLSFVHPSTQ 311
Query: 233 LKLKWRINLPDDISKLIT 250
+ + +P DI L++
Sbjct: 312 ETVSFEAPIPQDIYHLLS 329
>gi|349609964|ref|ZP_08889327.1| ribosomal large subunit pseudouridine synthase D [Neisseria sp.
GT4A_CT1]
gi|348610907|gb|EGY60586.1| ribosomal large subunit pseudouridine synthase D [Neisseria sp.
GT4A_CT1]
Length = 345
Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 156/252 (61%), Gaps = 18/252 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + K E + LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL
Sbjct: 58 VTVRPSEENLAFKPE--AMDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC 115
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ GI +G
Sbjct: 116 PELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDG 175
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TGRTHQIR
Sbjct: 176 KIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIR 230
Query: 189 VHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
VHM+ H + D +YG K+ KSL RQALHAY+L +HPK + +
Sbjct: 231 VHMREANHPLAADPVYGNLRHPCSEPVKEAVKSL-GARQALHAYRLSFVHPKTGETVSFE 289
Query: 239 INLPDDISKLIT 250
+PDDI L++
Sbjct: 290 APIPDDIYHLLS 301
>gi|421539879|ref|ZP_15986033.1| pseudouridine synthase [Neisseria meningitidis 93004]
gi|402320481|gb|EJU55969.1| pseudouridine synthase [Neisseria meningitidis 93004]
Length = 374
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN SGTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWSGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|302879313|ref|YP_003847877.1| RluA family pseudouridine synthase [Gallionella capsiferriformans
ES-2]
gi|302582102|gb|ADL56113.1| pseudouridine synthase, RluA family [Gallionella capsiferriformans
ES-2]
Length = 326
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 162/253 (64%), Gaps = 14/253 (5%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E + + P+ + + I LDI+YED++++++NK GLVVHP GN GTL + L
Sbjct: 67 GGEKLAVLPQVTQSEQPYQAEDIPLDIVYEDDDLLVINKPVGLVVHPGSGNWQGTLLNAL 126
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L +P L VPRAGIVHRLDK++SGL+VVAK++ S +LV QL+ V+R+YLA+V G
Sbjct: 127 LHHWPELALVPRAGIVHRLDKDTSGLLVVAKTLISQTNLVRQLQERSVKREYLALVHGEL 186
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P NR+KM V + K A+T+Y+ T +L+RC L+TGRT
Sbjct: 187 SHGGYVDQPIGRHPSNRVKMAVVE--TGKDAVTHYKVERTF----PSCTLLRCTLETGRT 240
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLI--------FNRQALHAYKLGLIHPKNNLKLK 236
HQIRVHM +L H +VGD++Y K K ++ F RQALHA +L L HP + +++
Sbjct: 241 HQIRVHMTYLKHPLVGDSVYLKGPQKCVLQLRDVLTRFPRQALHATRLALEHPISGERME 300
Query: 237 WRINLPDDISKLI 249
W + LPDD+ +L+
Sbjct: 301 WHVPLPDDMQQLL 313
>gi|313668816|ref|YP_004049100.1| ribosomal large subunit pseudouridine synthase D [Neisseria
lactamica 020-06]
gi|313006278|emb|CBN87741.1| putative ribosomal large subunit pseudouridine synthase D
[Neisseria lactamica 020-06]
Length = 374
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN SGTL
Sbjct: 79 MIGGEQIRVTVRPSAEYSAFAPEP--MDLDIVYEDDTVIVVNKPAGLVVHPAAGNWSGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L +HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNLRHPCGDTVKEAVKSL-GARQALHAYRLSFVHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +P+DI L++
Sbjct: 311 TGETVSFEAPIPNDIYHLLS 330
>gi|421554465|ref|ZP_16000406.1| pseudouridine synthase [Neisseria meningitidis 98008]
gi|402332425|gb|EJU67750.1| pseudouridine synthase [Neisseria meningitidis 98008]
Length = 374
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN SGTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWSGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNLRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|319638102|ref|ZP_07992866.1| ribosomal large subunit pseudouridine synthase D [Neisseria mucosa
C102]
gi|317400747|gb|EFV81404.1| ribosomal large subunit pseudouridine synthase D [Neisseria mucosa
C102]
Length = 374
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 156/257 (60%), Gaps = 18/257 (7%)
Query: 5 GYELI--IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
G ELI ++P + E + LDIIYED+ +I++NK AGLVVHPA GN SGTL +
Sbjct: 81 GGELIAVTVRPSEENLAFTPEP--MDLDIIYEDDTVIVINKPAGLVVHPASGNWSGTLLN 138
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ G
Sbjct: 139 GLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAIANG 198
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TG
Sbjct: 199 IVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAITHVKVLERYLAH----SYIECSLETG 253
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGK---------KYSKSLIFNRQALHAYKLGLIHPKNNL 233
RTHQIRVHM+ H + D +YG K + + RQALHAY+L +HPK
Sbjct: 254 RTHQIRVHMREANHPLAADPVYGNLRHPCSDAVKEAVKALGARQALHAYRLSFVHPKTGE 313
Query: 234 KLKWRINLPDDISKLIT 250
+ + +PDD+ L++
Sbjct: 314 TVSFEAPMPDDMYHLLS 330
>gi|241760159|ref|ZP_04758257.1| ribosomal large subunit pseudouridine synthase D [Neisseria
flavescens SK114]
gi|241319613|gb|EER56043.1| ribosomal large subunit pseudouridine synthase D [Neisseria
flavescens SK114]
Length = 374
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 156/257 (60%), Gaps = 18/257 (7%)
Query: 5 GYELI--IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
G ELI ++P + E + LDIIYED+ +I++NK AGLVVHPA GN SGTL +
Sbjct: 81 GGELIAVTVRPSEENLAFTPEP--MDLDIIYEDDAVIVINKPAGLVVHPAAGNWSGTLLN 138
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ G
Sbjct: 139 GLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANG 198
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TG
Sbjct: 199 IVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAITHVKVLERYLSH----SYIECSLETG 253
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGK---------KYSKSLIFNRQALHAYKLGLIHPKNNL 233
RTHQIRVHM+ H + D +YG K + + RQALHAY+L +HPK
Sbjct: 254 RTHQIRVHMREANHPLAADPVYGNLRHPCSDAVKEAIKALGARQALHAYRLSFVHPKTGE 313
Query: 234 KLKWRINLPDDISKLIT 250
+ + +PDD+ L++
Sbjct: 314 TVAFEAPMPDDMYHLLS 330
>gi|421537655|ref|ZP_15983838.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|402318322|gb|EJU53845.1| pseudouridine synthase [Neisseria meningitidis 93003]
Length = 374
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN SGTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWSGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|238021276|ref|ZP_04601702.1| hypothetical protein GCWU000324_01175 [Kingella oralis ATCC 51147]
gi|237868256|gb|EEP69262.1| hypothetical protein GCWU000324_01175 [Kingella oralis ATCC 51147]
Length = 371
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 161/260 (61%), Gaps = 20/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G +L + I+P + E + LDI+YED+ +++LNK AGLVVHPA GN +GTL
Sbjct: 77 LIGGEQLAVNIQPSQETQAYTPE--AMPLDIVYEDDSVLVLNKPAGLVVHPAAGNWTGTL 134
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL L VPRAGIVHRLDK++SGLMVVAK++ + HLV QL+ V+R Y A+
Sbjct: 135 LNGLLAHASELSQVPRAGIVHRLDKDTSGLMVVAKTLPAQNHLVQQLQSRSVKRIYRAIA 194
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F K A+T+ + L + H S I C+L+
Sbjct: 195 DGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKEAITHVKVLER---YQAH-SYIECSLE 249
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVH++ H + GD +YG K K+L RQALHAY+L +HPK
Sbjct: 250 TGRTHQIRVHLREARHPLAGDPVYGNPRHPCSPEVKAEVKALA--RQALHAYRLSFVHPK 307
Query: 231 NNLKLKWRINLPDDISKLIT 250
N L + +PDD+ L++
Sbjct: 308 TNETLSFEAPMPDDMYHLLS 327
>gi|334129660|ref|ZP_08503464.1| Ribosomal large subunit pseudouridine synthase D [Methyloversatilis
universalis FAM5]
gi|333445345|gb|EGK73287.1| Ribosomal large subunit pseudouridine synthase D [Methyloversatilis
universalis FAM5]
Length = 326
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 152/226 (67%), Gaps = 12/226 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L +++ED+ +I+++K AGLVVHP G GTL + LL +P L VPRAGIVHRLDK+
Sbjct: 103 IPLRVVFEDDTVIVIDKPAGLVVHPGNGVPDGTLLNALLYRWPELARVPRAGIVHRLDKD 162
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVA+++++ LV QL+ V R+Y A+V G +G ++AAI R+P R +M V
Sbjct: 163 TSGLLVVARTVEAQTDLVRQLQARTVSRRYFAVVAGSVGADGTVDAAIGRHPVQRTRMAV 222
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ KPA T+Y ERL + +L+ C L+TGRTHQIRVHM +GH ++GD +
Sbjct: 223 VQ-VGGKPARTHYFVRERL-------RDATLVECRLETGRTHQIRVHMAHIGHSLLGDEV 274
Query: 204 YGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
Y + + + F+RQALHA++LGL+HP++ ++ W + LP D+ L+
Sbjct: 275 YAPR-NVAERFSRQALHAWRLGLVHPRSGEEVGWEVPLPADMVALL 319
>gi|394987721|ref|ZP_10380560.1| hypothetical protein SCD_00121 [Sulfuricella denitrificans skB26]
gi|393792940|dbj|GAB70199.1| hypothetical protein SCD_00121 [Sulfuricella denitrificans skB26]
Length = 329
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 161/247 (65%), Gaps = 14/247 (5%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
++P+ + + I L+I+YED+ ++++NK AGLVVHP GN GTL + LL P
Sbjct: 83 VEPELHPSETPFSAEDIALEIMYEDDALLVVNKPAGLVVHPGSGNWQGTLLNALLYHAPQ 142
Query: 71 LINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMI 130
L +PRAGIVHRLDK++SGL+VVAK++ S LV QL+ V+R YLA+V G+ +G +
Sbjct: 143 LACIPRAGIVHRLDKDTSGLLVVAKTLTSQTDLVRQLQARSVKRDYLAVVQGLVSGDGKV 202
Query: 131 NAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
+A + R+P R+KM + N K A+T+Y T + + +LIRC+L+TGRTHQIRVH
Sbjct: 203 DAPLGRHPSQRVKMAIV--HNGKAAVTHY----TVLEHFDRHTLIRCSLETGRTHQIRVH 256
Query: 191 MQWLGHGIVGDNLYGKKY--SKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLP 242
MQ +GH +VGD +YG + L+ RQALHA +LGLIHP + ++W++ LP
Sbjct: 257 MQSIGHPLVGDPVYGGRPLNLPPLLSDVVKHLGRQALHAERLGLIHPVSGEAMEWQVELP 316
Query: 243 DDISKLI 249
D++ L+
Sbjct: 317 QDMADLL 323
>gi|416163151|ref|ZP_11606941.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis N1568]
gi|433473105|ref|ZP_20430469.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97021]
gi|433481654|ref|ZP_20438919.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2006087]
gi|433483638|ref|ZP_20440868.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2002038]
gi|433485839|ref|ZP_20443040.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97014]
gi|325127790|gb|EGC50698.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis N1568]
gi|432210706|gb|ELK66662.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97021]
gi|432217485|gb|ELK73353.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2006087]
gi|432221763|gb|ELK77568.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2002038]
gi|432222885|gb|ELK78667.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97014]
Length = 374
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|255065280|ref|ZP_05317135.1| ribosomal large subunit pseudouridine synthase D [Neisseria sicca
ATCC 29256]
gi|255050701|gb|EET46165.1| ribosomal large subunit pseudouridine synthase D [Neisseria sicca
ATCC 29256]
Length = 374
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/252 (45%), Positives = 155/252 (61%), Gaps = 18/252 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ + P + K E + LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL
Sbjct: 87 VTVLPSEENLAFKPE--AMDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC 144
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ GI +G
Sbjct: 145 PELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDG 204
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TGRTHQIR
Sbjct: 205 KIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIR 259
Query: 189 VHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
VHM+ H + D +YG K+ KSL RQALHAY+L +HPK + +
Sbjct: 260 VHMREANHPLAADPVYGNLRHPCSEPVKEAVKSL-GARQALHAYRLSFVHPKTGETVSFE 318
Query: 239 INLPDDISKLIT 250
+PDDI L++
Sbjct: 319 APIPDDIYHLLS 330
>gi|421567147|ref|ZP_16012883.1| pseudouridine synthase [Neisseria meningitidis NM3001]
gi|402344158|gb|EJU79299.1| pseudouridine synthase [Neisseria meningitidis NM3001]
Length = 374
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|433500494|ref|ZP_20457480.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM174]
gi|432235785|gb|ELK91394.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM174]
Length = 374
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWRGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL +RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCSDPVKEAVKSL-GSRQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|90022196|ref|YP_528023.1| ribosomal large subunit pseudouridine synthase D [Saccharophagus
degradans 2-40]
gi|89951796|gb|ABD81811.1| ribosomal large subunit pseudouridine synthase D [Saccharophagus
degradans 2-40]
Length = 321
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 21/238 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED I+++NK AGLVVHPA GN SGTL + LL P L+NVPRAGIVHRLDK+
Sbjct: 81 INLNIVYEDEHILVINKQAGLVVHPAAGNWSGTLLNGLLHHVPSLVNVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI----PKLNGMINAAIMRNPHNRI 142
++GLMVVAKS+ + HLV QL+ V R Y A+V G KL G ++ AI R+P R+
Sbjct: 141 TTGLMVVAKSLPTQTHLVAQLQARTVSRHYQAVVHGTFAAKDKL-GTVDIAIGRHPTQRV 199
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM +N + KPA+T+Y R+ + H+ L L+TGRTHQIRVHM +G+ +VGD
Sbjct: 200 KMAALEN-SGKPAVTHY-RVVKDLQGFAHVHL---QLETGRTHQIRVHMAHIGYPLVGDQ 254
Query: 203 LYGKKYSKSL-----------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YGKK + F RQALHA++L L+HP + W +LP+D+ +LI
Sbjct: 255 VYGKKVPTKVRNHNPGAVHAEAFPRQALHAWRLSLVHPVTEETVFWEADLPEDMVQLI 312
>gi|416183900|ref|ZP_11612806.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M13399]
gi|421556926|ref|ZP_16002835.1| pseudouridine synthase [Neisseria meningitidis 80179]
gi|325133782|gb|EGC56438.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M13399]
gi|402335611|gb|EJU70875.1| pseudouridine synthase [Neisseria meningitidis 80179]
Length = 356
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 61 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 118
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 119 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 178
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 179 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 233
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 234 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 292
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 293 SGETVSFEAPIPDDIYHLLS 312
>gi|91775965|ref|YP_545721.1| ribosomal large subunit pseudouridine synthase D [Methylobacillus
flagellatus KT]
gi|91709952|gb|ABE49880.1| ribosomal large subunit pseudouridine synthase D [Methylobacillus
flagellatus KT]
Length = 356
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 162/257 (63%), Gaps = 18/257 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E + IKP+ E + I L++++ED I+++NK AG+VVHPA GN SGTL + L
Sbjct: 61 GGEQVQIKPQATPEALAFEPENIPLEVVFEDEHILVINKPAGMVVHPAAGNWSGTLLNAL 120
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L +VPRAGIVHRLDK++SGL+VVAK++ + +LV QL+ V+R+Y +VWG
Sbjct: 121 LYHAPQLKDVPRAGIVHRLDKDTSGLLVVAKTLAAQTNLVRQLQARTVKREYRTIVWGQV 180
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
NG ++ I R+PH R KM V N KPA+T+YE L ++ + +RC L+TGRT
Sbjct: 181 WRNGKVDQPIGRHPHARTKMAV--NRMGKPAVTHYEVLDRFSVH----TYMRCLLETGRT 234
Query: 185 HQIRVHMQWLGHGIVGDNLYG-------KKYSKS-----LIFNRQALHAYKLGLIHPKNN 232
HQIRVHMQ L IVGD +YG + S + L F RQALHA +LGL HP +
Sbjct: 235 HQIRVHMQHLKAPIVGDPVYGIRGILPLRHISDNLRNVLLEFKRQALHAIRLGLKHPVSG 294
Query: 233 LKLKWRINLPDDISKLI 249
++W++ L D+ L+
Sbjct: 295 EPMEWQVELAADMKILL 311
>gi|254673628|emb|CBA09173.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis alpha275]
Length = 374
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L +I+ S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLIH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|421565110|ref|ZP_16010896.1| pseudouridine synthase [Neisseria meningitidis NM3081]
gi|402345439|gb|EJU80556.1| pseudouridine synthase [Neisseria meningitidis NM3081]
Length = 374
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|261380320|ref|ZP_05984893.1| ribosomal large subunit pseudouridine synthase D [Neisseria
subflava NJ9703]
gi|284796836|gb|EFC52183.1| ribosomal large subunit pseudouridine synthase D [Neisseria
subflava NJ9703]
Length = 374
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 155/257 (60%), Gaps = 18/257 (7%)
Query: 5 GYELI--IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
G ELI ++P + E + LDIIYED+ +I++NK AGLVVHPA GN SGTL +
Sbjct: 81 GGELIAVTVRPSEENLAFTPEP--MDLDIIYEDDTVIVINKPAGLVVHPAAGNWSGTLLN 138
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ G
Sbjct: 139 GLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAIANG 198
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TG
Sbjct: 199 IVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAITHVKVLERYLAH----SYIECSLETG 253
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGK---------KYSKSLIFNRQALHAYKLGLIHPKNNL 233
RTHQIRVHM+ H + D +YG K + + RQALHAY L +HPK
Sbjct: 254 RTHQIRVHMREANHPLAADPVYGNLRHPCSDAVKEAIKALGARQALHAYHLSFVHPKTGE 313
Query: 234 KLKWRINLPDDISKLIT 250
+ + +PDD+ L++
Sbjct: 314 TVSFEAPMPDDMYHLLS 330
>gi|421542110|ref|ZP_15988220.1| pseudouridine synthase [Neisseria meningitidis NM255]
gi|421544076|ref|ZP_15990154.1| pseudouridine synthase [Neisseria meningitidis NM140]
gi|421546186|ref|ZP_15992235.1| pseudouridine synthase [Neisseria meningitidis NM183]
gi|421548455|ref|ZP_15994480.1| pseudouridine synthase [Neisseria meningitidis NM2781]
gi|421552480|ref|ZP_15998454.1| pseudouridine synthase [Neisseria meningitidis NM576]
gi|421558622|ref|ZP_16004500.1| pseudouridine synthase [Neisseria meningitidis 92045]
gi|402318046|gb|EJU53571.1| pseudouridine synthase [Neisseria meningitidis NM255]
gi|402323921|gb|EJU59359.1| pseudouridine synthase [Neisseria meningitidis NM183]
gi|402324188|gb|EJU59624.1| pseudouridine synthase [Neisseria meningitidis NM140]
gi|402326116|gb|EJU61521.1| pseudouridine synthase [Neisseria meningitidis NM2781]
gi|402331112|gb|EJU66453.1| pseudouridine synthase [Neisseria meningitidis NM576]
gi|402337365|gb|EJU72613.1| pseudouridine synthase [Neisseria meningitidis 92045]
Length = 374
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 311 TGETVSFEAPIPDDIYHLLS 330
>gi|385342295|ref|YP_005896166.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M01-240149]
gi|385856859|ref|YP_005903371.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis NZ-05/33]
gi|325202501|gb|ADY97955.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M01-240149]
gi|325207748|gb|ADZ03200.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis NZ-05/33]
Length = 374
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|34497647|ref|NP_901862.1| pseudouridine synthase [Chromobacterium violaceum ATCC 12472]
gi|34103503|gb|AAQ59865.1| pseudouridine synthase D [Chromobacterium violaceum ATCC 12472]
Length = 363
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 147/240 (61%), Gaps = 19/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L I++ED I+++NK AGLVVHPA GN SGTL + LL P L +VPRAGIVHR
Sbjct: 94 QPEPMDLPIVFEDEHILVINKPAGLVVHPAAGNWSGTLLNGLLHHCPALASVPRAGIVHR 153
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGLMVVAK++ + LV QL+ V+R Y A+ G+ +G I+A I R+ +NR+
Sbjct: 154 LDKDTSGLMVVAKTLPAQTELVRQLQARTVKRVYRAIADGVVPFDGTIDANIGRDANNRL 213
Query: 143 KMTVSKNFNAKPALTY---YERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V K F KPA+T+ ER A+ S + C L+TGRTHQIRVHM+ GH +
Sbjct: 214 KMAVLK-FGGKPAITHIRVLERFASH-------SHVECKLETGRTHQIRVHMREAGHPLA 265
Query: 200 GDNLYGKKYSKS--------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
GD +YG K RQALHA+ L L+HP + W+ LPDD L+
Sbjct: 266 GDPVYGNPRHKMDEEIAAGVKALGRQALHAFALALVHPATGEERSWKAPLPDDFRALLDL 325
>gi|304387998|ref|ZP_07370170.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis ATCC 13091]
gi|304337997|gb|EFM04135.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis ATCC 13091]
Length = 374
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|261364920|ref|ZP_05977803.1| ribosomal large subunit pseudouridine synthase D [Neisseria mucosa
ATCC 25996]
gi|288566705|gb|EFC88265.1| ribosomal large subunit pseudouridine synthase D [Neisseria mucosa
ATCC 25996]
Length = 374
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 156/252 (61%), Gaps = 18/252 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + K E + LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL
Sbjct: 87 VTVRPSEENLAFKPE--AMDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHC 144
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ GI +G
Sbjct: 145 PELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDG 204
Query: 129 MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TGRTHQIR
Sbjct: 205 KIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIR 259
Query: 189 VHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
VHM+ H + D +YG K+ KSL RQALHAY+L +HPK + +
Sbjct: 260 VHMREANHPLAADPVYGNLRHPCSEPVKEAVKSL-GARQALHAYRLSFVHPKTGETVSFE 318
Query: 239 INLPDDISKLIT 250
+P+D+ L++
Sbjct: 319 APIPEDMYHLLS 330
>gi|121634501|ref|YP_974746.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis FAM18]
gi|416178790|ref|ZP_11610747.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M6190]
gi|416192726|ref|ZP_11616832.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis ES14902]
gi|433466853|ref|ZP_20424310.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
87255]
gi|433468860|ref|ZP_20426289.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
98080]
gi|433492205|ref|ZP_20449299.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM586]
gi|433494282|ref|ZP_20451352.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM762]
gi|433496466|ref|ZP_20453507.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7089]
gi|433498526|ref|ZP_20455535.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7124]
gi|433502865|ref|ZP_20459830.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM126]
gi|120866207|emb|CAM09947.1| putative ribosomal large subunit pseudouridine synthase D
[Neisseria meningitidis FAM18]
gi|325131843|gb|EGC54543.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M6190]
gi|325137893|gb|EGC60468.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis ES14902]
gi|432203429|gb|ELK59480.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
87255]
gi|432205253|gb|ELK61283.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
98080]
gi|432228994|gb|ELK84687.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM586]
gi|432230956|gb|ELK86626.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM762]
gi|432234360|gb|ELK89980.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7124]
gi|432235166|gb|ELK90782.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7089]
gi|432240961|gb|ELK96492.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM126]
Length = 374
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWRGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCSDPVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|385337662|ref|YP_005891535.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis WUE 2594]
gi|319410076|emb|CBY90410.1| K06180 ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis WUE 2594]
Length = 392
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 150/234 (64%), Gaps = 16/234 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LDI+YED+ +I++NK AGLVVHPA GN +GTL + LL P L +PRAGIVHRLDK
Sbjct: 121 MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIVHRLDKE 180
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVAK++ + LV QL+ V+R Y A+ GI +G I I R+PHNR+KM V
Sbjct: 181 TSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRLKMAV 240
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
K F KPA+T+ + L + + S I C+L+TGRTHQIRVHM+ H + GD +YG
Sbjct: 241 VK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIRVHMREANHPLAGDPVYGN 295
Query: 206 ---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K+ KSL RQALHAY+L HP++ + + +PDDI L++
Sbjct: 296 PRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLS 348
>gi|389606225|emb|CCA45138.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis alpha522]
Length = 392
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 97 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 154
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 155 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 214
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 215 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 269
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 270 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 328
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 329 TGETVSFEAPIPDDIYHLLS 348
>gi|418290178|ref|ZP_12902354.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis NM220]
gi|372202059|gb|EHP15920.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis NM220]
Length = 374
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 311 TGETVSFEAPIPDDIYHLLS 330
>gi|418287917|ref|ZP_12900449.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis NM233]
gi|372202896|gb|EHP16652.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis NM233]
Length = 374
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 311 TGETVSFEAPIPDDIYHLLS 330
>gi|433475311|ref|ZP_20432652.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
88050]
gi|433513060|ref|ZP_20469854.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63049]
gi|433515499|ref|ZP_20472271.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2004090]
gi|433517207|ref|ZP_20473956.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
96023]
gi|433523591|ref|ZP_20480256.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97020]
gi|433527816|ref|ZP_20484427.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3652]
gi|433529990|ref|ZP_20486583.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3642]
gi|433532248|ref|ZP_20488814.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2007056]
gi|433534133|ref|ZP_20490678.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2001212]
gi|433540560|ref|ZP_20497015.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63006]
gi|432211129|gb|ELK67084.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
88050]
gi|432248737|gb|ELL04161.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63049]
gi|432254087|gb|ELL09423.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2004090]
gi|432254216|gb|ELL09551.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
96023]
gi|432260490|gb|ELL15748.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97020]
gi|432266123|gb|ELL21311.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3652]
gi|432267918|gb|ELL23090.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3642]
gi|432268193|gb|ELL23364.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2007056]
gi|432272643|gb|ELL27750.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2001212]
gi|432277575|gb|ELL32621.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63006]
Length = 374
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|254670508|emb|CBA06264.1| ribosomal large subunit pseudouridine synthase D, partial
[Neisseria meningitidis alpha153]
Length = 373
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 97 MIGGEQICVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 154
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 155 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 214
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 215 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 269
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 270 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 328
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 329 SGETVSFEAPIPDDIYHLLS 348
>gi|254448982|ref|ZP_05062436.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium HTCC5015]
gi|198261376|gb|EDY85667.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium HTCC5015]
Length = 353
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 162/259 (62%), Gaps = 17/259 (6%)
Query: 3 ISGYELIIIK-PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ G EL+ P++ E + I L ++YED++I++++K AG+VVHPA GN GTL
Sbjct: 60 VDGGELLRADFPEQEDLSGAVEAQDIPLVVLYEDDDILVVDKPAGMVVHPAAGNPDGTLQ 119
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P L VPR+GIVHRLDK++SGL+VVA++ ++ LV QL+ V R Y A+V+
Sbjct: 120 NALLFYAPELAGVPRSGIVHRLDKDTSGLLVVARNHSAHQSLVAQLQERSVSRIYEAIVF 179
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G+P G + I R+P +R KM V + K A+T+Y A +H S +RC L+T
Sbjct: 180 GVPVSGGRVEGNIGRHPGDRKKMAV-RQVGGKEAVTHYRVEA----KYRHHSHVRCQLET 234
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKKY------SKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM +G +VGD +YG + SL+ F+RQALHA +LGLIHP+
Sbjct: 235 GRTHQIRVHMSHIGFPLVGDPVYGGRLRLPGDIEDSLLACLKRFDRQALHAAELGLIHPR 294
Query: 231 NNLKLKWRINLPDDISKLI 249
+ ++W +P+D+ +L+
Sbjct: 295 SGEAMRWESPMPEDMDELL 313
>gi|261400385|ref|ZP_05986510.1| ribosomal large subunit pseudouridine synthase D [Neisseria
lactamica ATCC 23970]
gi|269209820|gb|EEZ76275.1| ribosomal large subunit pseudouridine synthase D [Neisseria
lactamica ATCC 23970]
Length = 374
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN SGTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWSGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNLRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 311 SGETVSFEAPIPNDIYHLLS 330
>gi|385324537|ref|YP_005878976.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D; rRNA pseudouridylate synthase D) [Neisseria
meningitidis 8013]
gi|261392924|emb|CAX50509.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D; rRNA pseudouridylate synthase D) [Neisseria
meningitidis 8013]
Length = 374
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|421560878|ref|ZP_16006731.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM2657]
gi|402339358|gb|EJU74574.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM2657]
Length = 356
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 61 MIGGEQICVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 118
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 119 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 178
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 179 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 233
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 234 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 292
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 293 SGETVSFEAPIPDDIYHLLS 312
>gi|385339679|ref|YP_005893551.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis G2136]
gi|325197923|gb|ADY93379.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis G2136]
Length = 374
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWRGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLPH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCSDPVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|433536386|ref|ZP_20492895.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
77221]
gi|432274814|gb|ELL29900.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
77221]
Length = 374
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+K+ V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKVAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|261377888|ref|ZP_05982461.1| ribosomal large subunit pseudouridine synthase D [Neisseria cinerea
ATCC 14685]
gi|269145743|gb|EEZ72161.1| ribosomal large subunit pseudouridine synthase D [Neisseria cinerea
ATCC 14685]
Length = 374
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 150/234 (64%), Gaps = 16/234 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LDI+YED+ +I++NK AGLVVHPA GN SGTL + LL P L VPRAGIVHRLDK
Sbjct: 103 MALDIVYEDDTVIVVNKPAGLVVHPAAGNWSGTLLNGLLAHCPELSQVPRAGIVHRLDKE 162
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVAK++++ LV QL+ V+R Y A+ GI +G I I R+PHNR+KM V
Sbjct: 163 TSGLMVVAKTLQAQNSLVQQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRLKMAV 222
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
K F KPA+T+ + L + + S I C+L+TGRTHQIRVHM+ H + D +YG
Sbjct: 223 VK-FGGKPAVTHVKVLERYLAH----SYIECSLETGRTHQIRVHMREANHPLAADPVYGN 277
Query: 206 ---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K+ KSL RQALHAY+L ++PK + + +PDD+ L++
Sbjct: 278 LRHPCSESAKEAVKSL-GARQALHAYRLSFVYPKTGETVSFEAPIPDDMYHLLS 330
>gi|114331227|ref|YP_747449.1| RluA family pseudouridine synthase [Nitrosomonas eutropha C91]
gi|114308241|gb|ABI59484.1| ribosomal large subunit pseudouridine synthase D [Nitrosomonas
eutropha C91]
Length = 342
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 153/233 (65%), Gaps = 12/233 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L IIYED+ +I+++K AGLVVHP GN GTL + LL P L VPRAGIVHR
Sbjct: 102 QAEAIPLSIIYEDDHLIVIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHR 161
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL+VVAK+I++ + LV QL+ V+R Y A+ G + +G+++A I R+P +R
Sbjct: 162 LDKDTTGLLVVAKTIEAQLDLVRQLQQRTVKRHYFALALGGIEKDGLVDAPIGRHPVHRT 221
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V K N KPA TYY L + +L++C+L+TGRTHQIRVH+ +GH + GD
Sbjct: 222 RMAVVK--NGKPARTYYRILEKFVA----CTLLQCSLETGRTHQIRVHLMSIGHPLAGDP 275
Query: 203 LYGKKYSKSLIFN------RQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YGK S + RQALHA +L L HP + + W +LPDD+S+L+
Sbjct: 276 VYGKISSDPPTADAIVHLPRQALHARQLELTHPNSGQIMHWESSLPDDMSRLL 328
>gi|421550254|ref|ZP_15996259.1| pseudouridine synthase [Neisseria meningitidis 69166]
gi|433471192|ref|ZP_20428583.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
68094]
gi|433477189|ref|ZP_20434512.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70012]
gi|433525776|ref|ZP_20482410.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
69096]
gi|433538581|ref|ZP_20495061.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70030]
gi|402330469|gb|EJU65816.1| pseudouridine synthase [Neisseria meningitidis 69166]
gi|432209681|gb|ELK65648.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
68094]
gi|432216411|gb|ELK72292.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70012]
gi|432261967|gb|ELL17212.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
69096]
gi|432274589|gb|ELL29676.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70030]
Length = 374
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|416214106|ref|ZP_11622701.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M01-240013]
gi|325143909|gb|EGC66219.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M01-240013]
Length = 356
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 61 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 118
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 119 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 178
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 179 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 233
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 234 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 292
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 293 TGETVSFEAPIPDDIYHLLS 312
>gi|433521529|ref|ZP_20478224.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
61103]
gi|432260302|gb|ELL15561.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
61103]
Length = 374
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 311 TGETVSFEAPIPDDIYHLLS 330
>gi|385851630|ref|YP_005898145.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M04-240196]
gi|325206453|gb|ADZ01906.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M04-240196]
Length = 374
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 311 TGETVSFEAPIPDDIYHLLS 330
>gi|385328039|ref|YP_005882342.1| putative ribosomal large subunit pseudouridine synthase D
[Neisseria meningitidis alpha710]
gi|416188291|ref|ZP_11614760.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M0579]
gi|416197650|ref|ZP_11618680.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis CU385]
gi|308388890|gb|ADO31210.1| putative ribosomal large subunit pseudouridine synthase D
[Neisseria meningitidis alpha710]
gi|325136074|gb|EGC58684.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M0579]
gi|325139918|gb|EGC62448.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis CU385]
Length = 374
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|119476934|ref|ZP_01617215.1| Pseudouridine synthase, RluD [marine gamma proteobacterium
HTCC2143]
gi|119449741|gb|EAW30978.1| Pseudouridine synthase, RluD [marine gamma proteobacterium
HTCC2143]
Length = 318
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 150/240 (62%), Gaps = 16/240 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + LDI+YED ++++NK AGLVVHP GN SGTL + LL P + +VPRAGIVHR
Sbjct: 77 DAESMDLDIVYEDEALLVVNKPAGLVVHPGSGNASGTLLNALLAHLPDIASVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVAK++ + LVNQL+ V R Y A+V+G G++ A I R+P R
Sbjct: 137 LDKDTSGIMVVAKTLAAQNSLVNQLQARTVSRVYEAVVFGSLTGGGVVRADIGRHPRQRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V K A T+Y RL N H IRC L+TGRTHQIRVHM + H +VGD
Sbjct: 197 KMAVLA-IGGKEATTHY-RLIKRFNNHCH---IRCMLETGRTHQIRVHMAHIKHALVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
+Y K S+ LI F RQALHA KL LIHP +N ++ W I L DD+ KLI
Sbjct: 252 VYAGRPRIPKGASEELINGLRGFGRQALHARKLSLIHPLSNEEVSWEIPLVDDMVKLIAL 311
>gi|385854850|ref|YP_005901363.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M01-240355]
gi|325203791|gb|ADY99244.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis M01-240355]
Length = 374
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +P+DI L++
Sbjct: 311 TGETVSFEAPIPNDIYHLLS 330
>gi|329120441|ref|ZP_08249106.1| ribosomal large subunit pseudouridine synthase D [Neisseria
bacilliformis ATCC BAA-1200]
gi|327461899|gb|EGF08229.1| ribosomal large subunit pseudouridine synthase D [Neisseria
bacilliformis ATCC BAA-1200]
Length = 373
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 158/257 (61%), Gaps = 14/257 (5%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I G L + ++N L T + + LDI+YED+ +++L+K AGLVVHPA GN SGTL
Sbjct: 79 LIGGETLAVRVRERNETLAFTPEP-MDLDIVYEDDSVMVLDKPAGLVVHPAAGNWSGTLL 137
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P L NVPRAGIVHRLDK++SGLMVVAK++ + LV Q++ V+R Y A+
Sbjct: 138 NGLLAYCPALQNVPRAGIVHRLDKDTSGLMVVAKTLAAQTDLVRQMQARSVKRIYRAVAD 197
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
GI +G I I R+PHNR KM V F K A+T+ + L + + S I C L+T
Sbjct: 198 GIVPFDGKIETLIGRDPHNRTKMAVV-GFGGKEAVTHVKVLERYLAH----SYIECALET 252
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGK-KYSKSLI-------FNRQALHAYKLGLIHPKNNL 233
GRTHQIRVHM+ H + GD +YG ++ S I RQALHAY+L HP++
Sbjct: 253 GRTHQIRVHMREARHPLAGDPVYGNLRHPASDIVKTAVRGLGRQALHAYRLSFAHPQSGE 312
Query: 234 KLKWRINLPDDISKLIT 250
+++ LP DI L++
Sbjct: 313 TMRFEAPLPADIHHLLS 329
>gi|325981783|ref|YP_004294185.1| RluA family pseudouridine synthase [Nitrosomonas sp. AL212]
gi|325531302|gb|ADZ26023.1| pseudouridine synthase, RluA family [Nitrosomonas sp. AL212]
Length = 285
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 158/257 (61%), Gaps = 14/257 (5%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
++ G E + I P K + + I L+ I ED +II+NK AGLV HP GN GTL
Sbjct: 29 QLVWGNEHVEIFPLKIAAESPFVAEAIHLNTIEEDETLIIINKPAGLVTHPGNGNWQGTL 88
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L N+PRAGIVHRLDKN++GL+V+AK++ + LV QL+ V+R YLA+V
Sbjct: 89 LNALLHHAPELKNIPRAGIVHRLDKNTTGLLVIAKTLAAQTSLVRQLQQRTVKRDYLALV 148
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
G K G I+A I R+P +R KMT++ KPA T Y+ I N + +L++C+L+
Sbjct: 149 LGEIKQAGNIDAPIGRHPIHRTKMTITS--KGKPARTNYQV----IENFEGCTLLQCSLE 202
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS--------LIFNRQALHAYKLGLIHPKNN 232
TGRTHQIRVH+ +GH +VGD +YG K K+ F RQALHA KL LIHPK
Sbjct: 203 TGRTHQIRVHLNAIGHALVGDPVYGGKPGKTARAIAQILTDFPRQALHAQKLALIHPKTE 262
Query: 233 LKLKWRINLPDDISKLI 249
+W P+DI+ L+
Sbjct: 263 QINQWEAPTPEDINDLL 279
>gi|225076527|ref|ZP_03719726.1| hypothetical protein NEIFLAOT_01575 [Neisseria flavescens
NRL30031/H210]
gi|224952206|gb|EEG33415.1| hypothetical protein NEIFLAOT_01575 [Neisseria flavescens
NRL30031/H210]
Length = 374
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 155/257 (60%), Gaps = 18/257 (7%)
Query: 5 GYELI--IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
G ELI ++P + E + LDIIYED+ +I++NK AGLVVHPA GN SGTL +
Sbjct: 81 GGELIAVTVRPSEENLAFTPEP--MDLDIIYEDDTVIVINKPAGLVVHPAAGNWSGTLLN 138
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+ G
Sbjct: 139 GLLAHCSELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANG 198
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+TG
Sbjct: 199 IVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAITHVKVLERYLAH----SYIECSLETG 253
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGK---------KYSKSLIFNRQALHAYKLGLIHPKNNL 233
RTHQIRVHM+ H + D +YG K + + RQALHAY+L +HPK
Sbjct: 254 RTHQIRVHMREANHPLAADPVYGNLRHPCSDAVKEAIKALGARQALHAYRLSFVHPKTGE 313
Query: 234 KLKWRINLPDDISKLIT 250
+ + +PDD+ L++
Sbjct: 314 TVSFEAPMPDDMYHLLS 330
>gi|335044156|ref|ZP_08537181.1| pseudouridylate synthase, 23S RNA-specific [Methylophaga
aminisulfidivorans MP]
gi|333787402|gb|EGL53286.1| pseudouridylate synthase, 23S RNA-specific [Methylophaga
aminisulfidivorans MP]
Length = 320
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 164/260 (63%), Gaps = 21/260 (8%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
I G E + I + + I LDIIYED+++II+NK AG+VVHP GN GTL +
Sbjct: 58 IQGGEKVTIGTELQVQDESWLAETIALDIIYEDDDVIIINKPAGMVVHPGAGNHQGTLVN 117
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L N+PRAGIVHR+DK ++GL+++AK++ ++ LV+QL+ V+R+YLA+ G
Sbjct: 118 ALLAHAPQLANIPRAGIVHRIDKATTGLLMIAKTLTAHNSLVSQLQARSVKREYLAVACG 177
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI--SLIRCNLK 180
+ G ++ AI R+ +R +M VS KP++T+Y + +++ +LI+C L+
Sbjct: 178 VFTAGGTVDEAIGRHGIDRKRMAVSA--TGKPSVTHYR------VEQRYRAHTLIKCKLE 229
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKY--SKSLI---------FNRQALHAYKLGLIHP 229
TGRTHQIRVHM + H ++GD +YG ++ +K + F RQALHA LG IHP
Sbjct: 230 TGRTHQIRVHMAHIRHPLLGDPVYGGRFKQAKGMTESCREVIQNFRRQALHAGLLGFIHP 289
Query: 230 KNNLKLKWRINLPDDISKLI 249
++ W+I+LPDD+ +L+
Sbjct: 290 TTGEEVSWQIDLPDDMQQLV 309
>gi|114321699|ref|YP_743382.1| ribosomal large subunit pseudouridine synthase D [Alkalilimnicola
ehrlichii MLHE-1]
gi|114228093|gb|ABI57892.1| ribosomal large subunit pseudouridine synthase D [Alkalilimnicola
ehrlichii MLHE-1]
Length = 313
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 23/246 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I L I YED +++++K AGLVVHP GN GTL + LL P L +PR+GI
Sbjct: 74 QRVSAEPIPLRIQYEDRHLLVIDKPAGLVVHPGAGNREGTLQNALLHHDPQLAELPRSGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SGLMVVA+S+ ++ LV QL+ V+R+YLA+V G P G + A I R+P
Sbjct: 134 VHRLDKDTSGLMVVARSLAAHTALVAQLQARSVRREYLALVNGCPVAGGTVEAPIGRHPR 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R +M V + +PA T+Y ERLA +L+RC L+TGRTHQIRVHM G+
Sbjct: 194 DRKRMAVVE--RGRPATTHYRVEERLAAH-------TLLRCFLETGRTHQIRVHMAHAGY 244
Query: 197 GIVGDNLYGKK----------YSKSL-IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+VGD +YG + ++L F RQALHA +L L HP++ +L W LP+D+
Sbjct: 245 PLVGDPVYGGRLRLPPRATEAQRQALRAFQRQALHAARLALDHPESGERLSWEAPLPEDM 304
Query: 246 SKLITF 251
+ L+
Sbjct: 305 AALLAC 310
>gi|218767826|ref|YP_002342338.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis Z2491]
gi|433479325|ref|ZP_20436620.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63041]
gi|433519428|ref|ZP_20476149.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
65014]
gi|34395831|sp|Q9JVB6.1|RLUD_NEIMA RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|121051834|emb|CAM08140.1| putative ribosomal large subunit pseudouridine synthase D
[Neisseria meningitidis Z2491]
gi|432217725|gb|ELK73592.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63041]
gi|432255419|gb|ELL10748.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
65014]
Length = 374
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|240013591|ref|ZP_04720504.1| RluD [Neisseria gonorrhoeae DGI18]
gi|240120661|ref|ZP_04733623.1| RluD [Neisseria gonorrhoeae PID24-1]
gi|268603103|ref|ZP_06137270.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae PID1]
gi|385335205|ref|YP_005889152.1| protein RluD [Neisseria gonorrhoeae TCDC-NG08107]
gi|268587234|gb|EEZ51910.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae PID1]
gi|317163748|gb|ADV07289.1| RluD [Neisseria gonorrhoeae TCDC-NG08107]
Length = 374
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM K F KPA+T+ + L + + S I C+L
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAAVK-FGGKPAVTHVKVLERYLAH----SYIECSLG 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFETPIPDDIYHLLS 330
>gi|291044392|ref|ZP_06570101.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae DGI2]
gi|291011286|gb|EFE03282.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae DGI2]
Length = 392
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 97 MIGGEQICVTVRPSEENLAFVPEP--MDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 154
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 155 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 214
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM K F KPA+T+ + L + + S I C+L
Sbjct: 215 NGIVPFDGKIETQIGRDPHNRLKMAAVK-FGGKPAVTHVKVLERYLAH----SYIECSLG 269
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 270 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 328
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 329 SGETVSFEAPIPDDIYHLLS 348
>gi|254804587|ref|YP_003082808.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis alpha14]
gi|254668128|emb|CBA04722.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis alpha14]
Length = 374
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 158/260 (60%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDIIYED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV L+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQHLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + +PDDI L++
Sbjct: 311 TGETVSFEAPIPDDIYHLLS 330
>gi|194098000|ref|YP_002001048.1| protein RluD [Neisseria gonorrhoeae NCCP11945]
gi|254493184|ref|ZP_05106355.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae 1291]
gi|268594325|ref|ZP_06128492.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae 35/02]
gi|268598444|ref|ZP_06132611.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae MS11]
gi|193933290|gb|ACF29114.1| RluD [Neisseria gonorrhoeae NCCP11945]
gi|226512224|gb|EEH61569.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae 1291]
gi|268547714|gb|EEZ43132.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae 35/02]
gi|268582575|gb|EEZ47251.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae MS11]
Length = 374
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM K F KPA+T+ + L + + S I C+L
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAAVK-FGGKPAVTHVKVLERYLAH----SYIECSLG 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|59800728|ref|YP_207440.1| protein RluD [Neisseria gonorrhoeae FA 1090]
gi|240016030|ref|ZP_04722570.1| RluD [Neisseria gonorrhoeae FA6140]
gi|268596320|ref|ZP_06130487.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae FA19]
gi|268600798|ref|ZP_06134965.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae PID18]
gi|268681584|ref|ZP_06148446.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae PID332]
gi|268683812|ref|ZP_06150674.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae SK-92-679]
gi|268686054|ref|ZP_06152916.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae SK-93-1035]
gi|293399573|ref|ZP_06643726.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae F62]
gi|59717623|gb|AAW89028.1| putative ribosomal large subunit pseudouridine synthase D
[Neisseria gonorrhoeae FA 1090]
gi|268550108|gb|EEZ45127.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae FA19]
gi|268584929|gb|EEZ49605.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae PID18]
gi|268621868|gb|EEZ54268.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae PID332]
gi|268624096|gb|EEZ56496.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae SK-92-679]
gi|268626338|gb|EEZ58738.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae SK-93-1035]
gi|291610142|gb|EFF39264.1| ribosomal large subunit pseudouridine synthase D [Neisseria
gonorrhoeae F62]
Length = 374
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 159/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM K F KPA+T+ + L + + S I C+L
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAAVK-FGGKPAVTHVKVLERYLAH----SYIECSLG 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>gi|404379731|ref|ZP_10984784.1| ribosomal large subunit pseudouridine synthase D [Simonsiella
muelleri ATCC 29453]
gi|404294571|gb|EFG30742.2| ribosomal large subunit pseudouridine synthase D [Simonsiella
muelleri ATCC 29453]
Length = 372
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 153/238 (64%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E +++ LDI++ED+ +I+LNK AGLVVHPA GN +GTL + LL P L VPRAGIVHR
Sbjct: 99 EPELMDLDIVFEDDAVIVLNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQVPRAGIVHR 158
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGLMVVAK++ HLV QL+ V+R Y A+ G+ +G I I R+PHNR+
Sbjct: 159 LDKDTSGLMVVAKTLPVQNHLVQQLQNRSVKRIYRAVADGVVPFDGKIETLIGRDPHNRL 218
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V K F K A+T+ + L + H S I C+L+TGRTHQIRVHM+ H + GD
Sbjct: 219 KMAVVK-FGGKEAITHVKVLER---YQSH-SYIECSLETGRTHQIRVHMREARHPLAGDL 273
Query: 203 LYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+YG K K L RQALHAY+L +HPK++ + + +PDD+ L++
Sbjct: 274 VYGNPRHVCSQPVKDAVKKLA--RQALHAYRLSFVHPKSDQSVSFEAPIPDDMYYLLS 329
>gi|325265702|ref|ZP_08132391.1| ribosomal large subunit pseudouridine synthase D [Kingella
denitrificans ATCC 33394]
gi|324982833|gb|EGC18456.1| ribosomal large subunit pseudouridine synthase D [Kingella
denitrificans ATCC 33394]
Length = 367
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/256 (46%), Positives = 158/256 (61%), Gaps = 17/256 (6%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G EL+ ++ + + E + + LDI+YED+ +I+LNK AGLVVHPA GN +GTL + L
Sbjct: 76 GGELLRVQIQPSDENQAFEPEAMDLDIVYEDDSVIVLNKPAGLVVHPAAGNWTGTLLNGL 135
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK++SGLMVVAK++ + HLV QL+ V+R Y A+ GI
Sbjct: 136 LAHCPELGQVPRAGIVHRLDKDTSGLMVVAKTLPAQNHLVQQLQNRSVKRIYRAVADGIV 195
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+G I I R+PHNR+KM V K F K A+T+ L + H S I C L+TGRT
Sbjct: 196 PFDGKIETLIGRDPHNRLKMAVVK-FGGKEAVTHVSVLER---YQAH-SYIECRLETGRT 250
Query: 185 HQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNLK 234
HQIRVHM+ H + GD +YG K+ K L RQALHA++L IHPK+
Sbjct: 251 HQIRVHMREARHPLAGDPVYGNPRHACSPAVKETVKQLA--RQALHAHRLSFIHPKSGEW 308
Query: 235 LKWRINLPDDISKLIT 250
L + +P D+ L++
Sbjct: 309 LSFEAPIPADMYHLLS 324
>gi|118594976|ref|ZP_01552323.1| pseudouridine synthase D [Methylophilales bacterium HTCC2181]
gi|118440754|gb|EAV47381.1| pseudouridine synthase D [Methylophilales bacterium HTCC2181]
Length = 349
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 164/261 (62%), Gaps = 17/261 (6%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
I G E I I + + L + E + + ++ +YED+ I+++NK AGLVVHP GN SGTL +
Sbjct: 57 IIGGENISIDFQPDDELKQFEAEDMIIEAVYEDDHILVINKPAGLVVHPGAGNWSGTLLN 116
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL +P + RAGIVHRLDK++SGLMVV+K+ + HL+ QL+ V+R+Y +VWG
Sbjct: 117 GLLHHFPENKVLARAGIVHRLDKDTSGLMVVSKTEVAQQHLIKQLQNKTVKREYRCIVWG 176
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
NG++ I R+P R+KM V+K + K ++T+YE L H S +RCNL+TG
Sbjct: 177 QVWKNGVVKEPIGRHPTVRVKMAVNK-IHGKESVTHYEVLE----RFGHHSYLRCNLETG 231
Query: 183 RTHQIRVHMQWLGHGIVGDNLYG-------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
RTHQIRVHM + IVGD +YG ++ S+ L F RQALHA LGLIHP
Sbjct: 232 RTHQIRVHMSHVQAPIVGDPVYGIKKIIPVRELSQDLKDEVFGFPRQALHAIGLGLIHPA 291
Query: 231 NNLKLKWRINLPDDISKLITF 251
N ++W I+LPDD+ KL+
Sbjct: 292 TNEFMRWDIDLPDDMKKLLEL 312
>gi|381401155|ref|ZP_09926070.1| ribosomal large subunit pseudouridine synthase D [Kingella kingae
PYKK081]
gi|380833844|gb|EIC13697.1| ribosomal large subunit pseudouridine synthase D [Kingella kingae
PYKK081]
Length = 371
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 161/257 (62%), Gaps = 19/257 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E + +K +++ E + I L+I++ED+ +I+LNK AGLVVHPA GN +GTL + L
Sbjct: 81 GGEKLSVKIQQSDENQAYEPEHIDLNIVFEDDTVIVLNKPAGLVVHPAAGNWTGTLLNGL 140
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK++SGLMVVAK++ + LV QL+ V+R Y A+ GI
Sbjct: 141 LAHCPELSQVPRAGIVHRLDKDTSGLMVVAKTLPAQNSLVQQLQNRTVKRIYRAVADGIV 200
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGR 183
+G I I R+PHNR+KM V K F K A+T+ + ++ + H S I C+L+TGR
Sbjct: 201 PFDGKIETLIGRDPHNRLKMAVVK-FGGKEAVTHVK-----VLERYHAHSYIECSLETGR 254
Query: 184 THQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNL 233
THQIRVHM+ H + GD +YG K KSL RQALHAY+L +HPK+
Sbjct: 255 THQIRVHMKEARHPLAGDPVYGNPRHVCSQPVKDVVKSLA--RQALHAYRLSFVHPKSGE 312
Query: 234 KLKWRINLPDDISKLIT 250
+ + +PDD+ L++
Sbjct: 313 LVSFEAPMPDDMYHLLS 329
>gi|15676602|ref|NP_273746.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis MC58]
gi|385853607|ref|YP_005900121.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis H44/76]
gi|427828412|ref|ZP_18995428.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis H44/76]
gi|433487935|ref|ZP_20445103.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M13255]
gi|433490052|ref|ZP_20447182.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM418]
gi|433504577|ref|ZP_20461517.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9506]
gi|433508975|ref|ZP_20465848.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
12888]
gi|34395832|sp|Q9K0B0.1|RLUD_NEIMB RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|7225933|gb|AAF41121.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis MC58]
gi|316983681|gb|EFV62662.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis H44/76]
gi|325200611|gb|ADY96066.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis H44/76]
gi|432224401|gb|ELK80166.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M13255]
gi|432228627|gb|ELK84325.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM418]
gi|432242092|gb|ELK97616.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9506]
gi|432247789|gb|ELL03224.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
12888]
Length = 374
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 311 SGETVSFEAPIPNDIYHLLS 330
>gi|291614496|ref|YP_003524653.1| pseudouridine synthase, RluA family [Sideroxydans lithotrophicus
ES-1]
gi|291584608|gb|ADE12266.1| pseudouridine synthase, RluA family [Sideroxydans lithotrophicus
ES-1]
Length = 331
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 157/254 (61%), Gaps = 16/254 (6%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I + P+ + + I LDI+YED+ ++I+NK GLVVHP GN GTL + L
Sbjct: 74 GGEHISVSPQIHPSEQPYHAEDIPLDIVYEDDAMLIINKPVGLVVHPGSGNWQGTLLNAL 133
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L +VPRAGIVHRLDK++SGLMVVAKS+ + LV Q++ V+R+YLA+VWG
Sbjct: 134 LHHAPQLADVPRAGIVHRLDKDTSGLMVVAKSLVAQTALVRQMQARSVKREYLALVWGEL 193
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGR 183
+ IN I R+P R+KM ++ + K A+T+ GI + + +L+RC L+TGR
Sbjct: 194 DRDYTINVPIGRHPSQRVKMATTE--SGKEAITH-----VGIEERFPYCTLVRCRLETGR 246
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLI--------FNRQALHAYKLGLIHPKNNLKL 235
THQIRVHM +GH ++GD +Y + K F RQALHA +L L HP ++
Sbjct: 247 THQIRVHMTHIGHPLIGDAVYQRGTQKCSPQLRELLNGFPRQALHATQLALNHPVTGERM 306
Query: 236 KWRINLPDDISKLI 249
++ LP+D+ +L+
Sbjct: 307 EFHSPLPEDMEELL 320
>gi|330999930|ref|ZP_08323628.1| ribosomal large subunit pseudouridine synthase D [Parasutterella
excrementihominis YIT 11859]
gi|329573337|gb|EGG54949.1| ribosomal large subunit pseudouridine synthase D [Parasutterella
excrementihominis YIT 11859]
Length = 409
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 147/235 (62%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ +D++YED++I+++NK A LVVHPA G+ TL + LL P +PRAGIVHRLD++
Sbjct: 117 MDIDVVYEDDDILVINKPARLVVHPAAGHWDDTLLNGLLAYNPIFRTLPRAGIVHRLDRD 176
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+ K+ + LV QL+ V+R+Y A+ G + +I AAI R+P N ++ T+
Sbjct: 177 TTGLMVVAKNEKAMLDLVQQLQARTVKREYWALTRGKAPADKVIEAAIERDPRNPLRFTI 236
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K AKPA T+ + + K S + C LKTGRTHQIRVHM+ +G ++GD LY
Sbjct: 237 GKGGRAKPATTHIRCIDQKEVKGKPFSWVACRLKTGRTHQIRVHMESIGLPLIGDPLYRN 296
Query: 207 KYSK-----SLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
K K S++ F+RQALHA +LGLIHP ++W P D L+ G
Sbjct: 297 KLPKPKEDGSVLNSFDRQALHASRLGLIHPVTKETMEWFAEPPQDFRDLMDELGF 351
>gi|161869644|ref|YP_001598812.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis 053442]
gi|161595197|gb|ABX72857.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis 053442]
Length = 392
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 158/260 (60%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 97 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 154
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 155 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVA 214
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 215 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 269
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HPK
Sbjct: 270 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPK 328
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ +P+DI L++
Sbjct: 329 TGETRSFEAPIPNDIYHLLS 348
>gi|303257043|ref|ZP_07343057.1| ribosomal large subunit pseudouridine synthase D [Burkholderiales
bacterium 1_1_47]
gi|302860534|gb|EFL83611.1| ribosomal large subunit pseudouridine synthase D [Burkholderiales
bacterium 1_1_47]
Length = 394
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 147/235 (62%), Gaps = 7/235 (2%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ +D++YED++I+++NK A LVVHPA G+ TL + LL P +PRAGIVHRLD++
Sbjct: 102 MDIDVVYEDDDILVINKPARLVVHPAAGHWDDTLLNGLLAYNPIFRTLPRAGIVHRLDRD 161
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+ K+ + LV QL+ V+R+Y A+ G + +I AAI R+P N ++ T+
Sbjct: 162 TTGLMVVAKNEKAMLDLVQQLQARTVKREYWALTRGKAPADKVIEAAIERDPRNPLRFTI 221
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K AKPA T+ + + K S + C LKTGRTHQIRVHM+ +G ++GD LY
Sbjct: 222 GKGGRAKPATTHIRCIDQKEVKGKPFSWVACRLKTGRTHQIRVHMESIGLPLIGDPLYRN 281
Query: 207 KYSK-----SLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
K K S++ F+RQALHA +LGLIHP ++W P D L+ G
Sbjct: 282 KLPKPKEDGSVLNSFDRQALHASRLGLIHPVTKETMEWFAEPPQDFRDLMDELGF 336
>gi|433464684|ref|ZP_20422169.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM422]
gi|433506722|ref|ZP_20463635.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9757]
gi|433510968|ref|ZP_20467800.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
4119]
gi|432204171|gb|ELK60216.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM422]
gi|432242787|gb|ELK98303.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9757]
gi|432248459|gb|ELL03884.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
4119]
Length = 334
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 39 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 96
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 97 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 156
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 157 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 211
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 212 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 270
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 271 SGETVSFEAPIPNDIYHLLS 290
>gi|192360779|ref|YP_001983659.1| pseudouridine synthase Rlu family protein [Cellvibrio japonicus
Ueda107]
gi|190686944|gb|ACE84622.1| pseudouridine synthase, RluA family subfamily [Cellvibrio japonicus
Ueda107]
Length = 320
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 152/238 (63%), Gaps = 16/238 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I+LDII+ED++++I+NK AGLVVHPA GN +GTL + LL P L+N+PRAGIVHR
Sbjct: 77 EPEAIELDIIHEDDDLLIINKQAGLVVHPAAGNYTGTLVNALLNHAPSLVNIPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+++++ LV QL V R+Y A+ G G ++A I R+P R
Sbjct: 137 LDKDTTGLMVVAKTLEAHTDLVAQLADRSVSREYEAVAVGAMTGGGTVDAPIGRHPLQRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V K A+T+Y R+A + H IR L+TGRTHQIRVHM +GH +VGD
Sbjct: 197 LMAVLSQ-GGKRAVTHY-RVAKRYPHHTH---IRVKLETGRTHQIRVHMAHVGHPLVGDQ 251
Query: 203 LYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG ++ ++ LI F RQALHA+KLGL HP +W LP D KL+
Sbjct: 252 TYGNRFKIPKGANQQLIEALKHFPRQALHAFKLGLEHPGTGEYTEWTAPLPADFRKLL 309
>gi|296314698|ref|ZP_06864639.1| ribosomal large subunit pseudouridine synthase D [Neisseria
polysaccharea ATCC 43768]
gi|296838532|gb|EFH22470.1| ribosomal large subunit pseudouridine synthase D [Neisseria
polysaccharea ATCC 43768]
Length = 374
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFMPEP--MDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNLRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 311 SGETVSFEAPIPNDIYHLLS 330
>gi|152997613|ref|YP_001342448.1| RluA family pseudouridine synthase [Marinomonas sp. MWYL1]
gi|150838537|gb|ABR72513.1| pseudouridine synthase, RluA family [Marinomonas sp. MWYL1]
Length = 327
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 158/264 (59%), Gaps = 29/264 (10%)
Query: 10 IIKPKKNFF-------------LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNL 56
I KPK+ F + E + + LD++YED++I+I+NK AGLVVHPA+GN
Sbjct: 51 ITKPKEKLFGGEVVTLDIVIEAQEEHEAQAMDLDVVYEDDDIMIINKPAGLVVHPAVGNR 110
Query: 57 SGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116
GTL + +L P ++PRAGIVHRLDK ++GLMVVAK++ + LV QL+ + R+Y
Sbjct: 111 DGTLMNAILHHAPETAHIPRAGIVHRLDKETTGLMVVAKTLAAQTDLVMQLQERSMGREY 170
Query: 117 LAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIR 176
A+ G+ G+++ I R+PHNR K V + N K A+T+Y RL N H IR
Sbjct: 171 EAVSIGVMTGGGVVDEPIGRHPHNRQKQAV-EPVNGKDAVTHY-RLVERFKNHTH---IR 225
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLG 225
L+TGRTHQIRVHM ++ + +VGD YG K S L F RQALHA KL
Sbjct: 226 LKLETGRTHQIRVHMAFIQYPLVGDPQYGGRLKMPKACSPELQDELRHFRRQALHAKKLE 285
Query: 226 LIHPKNNLKLKWRINLPDDISKLI 249
L HP ++W I+LPDD+ KL+
Sbjct: 286 LSHPITGEWMEWEIDLPDDMKKLL 309
>gi|350571227|ref|ZP_08939560.1| ribosomal large subunit pseudouridine synthase D [Neisseria
wadsworthii 9715]
gi|349792718|gb|EGZ46568.1| ribosomal large subunit pseudouridine synthase D [Neisseria
wadsworthii 9715]
Length = 373
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 155/257 (60%), Gaps = 14/257 (5%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I G EL++ + + T + + LDI+YED+ +I+LNK AGLVVHPA GN SGTL
Sbjct: 79 LIGGEELVVAVRQSDENAAFTPEP-MDLDILYEDDSVIVLNKPAGLVVHPAAGNWSGTLL 137
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL+ P L VPRAGIVHRLDK++SGLMVVAK++ S LV QL+ V+R Y A+
Sbjct: 138 NGLLDHCPDLAQVPRAGIVHRLDKDTSGLMVVAKTLPSQNDLVKQLQDRSVKRIYRAVAN 197
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
GI +G I I R+P+NR+KM V K F K A+T+ + L + S I C L+T
Sbjct: 198 GIVPFDGKIETLIGRDPYNRLKMAVVK-FGGKEAITHVKVLERYGAH----SYIECALET 252
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI--------FNRQALHAYKLGLIHPKNNL 233
GRTHQIRVHM+ H + GD +YG + NRQALHAY L HPK
Sbjct: 253 GRTHQIRVHMREANHPLAGDPVYGNPRHQCSAAVKEAIKDLNRQALHAYSLSFKHPKTGE 312
Query: 234 KLKWRINLPDDISKLIT 250
+ ++ LP D+ L++
Sbjct: 313 NMSFKAPLPQDMYHLLS 329
>gi|421906504|ref|ZP_16336397.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis alpha704]
gi|393292252|emb|CCI72333.1| ribosomal large subunit pseudouridine synthase D [Neisseria
meningitidis alpha704]
Length = 392
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 97 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 154
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 155 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 214
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 215 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 269
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 270 TGRTHQIRVHMREANHPLAADPVYGNLRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 328
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 329 SGETVSFEAPIPNDIYHLLS 348
>gi|421562927|ref|ZP_16008749.1| pseudouridine synthase [Neisseria meningitidis NM2795]
gi|402341634|gb|EJU76807.1| pseudouridine synthase [Neisseria meningitidis NM2795]
Length = 356
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 61 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 118
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 119 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 178
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 179 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 233
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 234 TGRTHQIRVHMREANHPLAADPVYGNLRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 292
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 293 SGETVSFEAPIPNDIYHLLS 312
>gi|410666028|ref|YP_006918399.1| pseudouridine synthase Rlu family protein [Simiduia agarivorans SA1
= DSM 21679]
gi|409028385|gb|AFV00670.1| pseudouridine synthase Rlu family protein [Simiduia agarivorans SA1
= DSM 21679]
Length = 322
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 145/239 (60%), Gaps = 22/239 (9%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I LDI+YED+ ++++NK AGLVVHP GN +GTL + LL P L VPRAGIVHRLD
Sbjct: 82 EAIALDIVYEDDTLLVINKPAGLVVHPGAGNPTGTLLNALLHHCPSLEQVPRAGIVHRLD 141
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK+ ++ I+LV QL+ V+R+Y A+V G G ++ + R+P R KM
Sbjct: 142 KDTTGLMVVAKTPQAQINLVRQLQKRSVKREYDALVVGKLIAGGTVDQPMARHPTQRTKM 201
Query: 145 TVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
V+ + K A+T Y ER H +L+RC+L TGRTHQIRVHM WL H +VGD
Sbjct: 202 AVT-DVGGKEAITRYSVSERFG-------HYTLVRCSLATGRTHQIRVHMAWLKHPLVGD 253
Query: 202 NLYGKKYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG + L F RQALHA L L+HP + W P+D +++
Sbjct: 254 KTYGGNRQLAAGISSELRNTILTFPRQALHATHLELVHPVLKETMAWHAERPEDFEQIL 312
>gi|298368341|ref|ZP_06979659.1| ribosomal large subunit pseudouridine synthase D [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282344|gb|EFI23831.1| ribosomal large subunit pseudouridine synthase D [Neisseria sp.
oral taxon 014 str. F0314]
Length = 373
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 149/234 (63%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LDI+YED+ +I++NKSAGLVVHPA GN SGTL + LL P L +PRAGIVHRLDK
Sbjct: 103 MDLDIVYEDDTVIVVNKSAGLVVHPAAGNWSGTLLNGLLAHCPELGQIPRAGIVHRLDKE 162
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVAK++ + LV QL+ V+R Y A+ GI +G I I R+PHNR+KM V
Sbjct: 163 TSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETLIGRDPHNRLKMAV 222
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
K + KPA+T+ + L + S I C+L+TGRTHQIRVHM+ H + D +YG
Sbjct: 223 VK-YGGKPAITHVKVLERYPAH----SYIECSLETGRTHQIRVHMREANHPLAADPIYGN 277
Query: 206 ---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K+ K+L RQALHAY+L +HPK + + +P+D+ L++
Sbjct: 278 PRHPCSEMVKEAVKAL--GRQALHAYRLSFLHPKTQKAVSFEAAIPEDMYHLLS 329
>gi|387130144|ref|YP_006293034.1| Ribosomal large subunit pseudouridine synthase D [Methylophaga sp.
JAM7]
gi|386271433|gb|AFJ02347.1| Ribosomal large subunit pseudouridine synthase D [Methylophaga sp.
JAM7]
Length = 325
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 163/259 (62%), Gaps = 17/259 (6%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
++ + ++I+ + N + + I L+IIYED +++ILNK AG+VVHP GN GTL +
Sbjct: 58 VNSGDSVLIEAELAVQDNNWQAEQISLNIIYEDEQVLILNKPAGMVVHPGAGNQDGTLVN 117
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L ++PRAGIVHR+DKN++GL++VAK++ ++ L+NQL+ V R+Y A++ G
Sbjct: 118 ALLAHAPGLTHIPRAGIVHRIDKNTTGLLMVAKTLPAHNSLINQLQERSVLREYQAIITG 177
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
+ G +N I R+ +R +M VS + KP++T+Y R+ H IRC L+TG
Sbjct: 178 VLTAGGTVNEPIGRHHIDRKRMAVSD--SGKPSITHY-RVEKRFRAHTH---IRCKLETG 231
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKY--SKSLI---------FNRQALHAYKLGLIHPKN 231
RTHQIRVHM + H +VGD +YG ++ K L F RQALHA LG IHPK+
Sbjct: 232 RTHQIRVHMAHIRHPLVGDPVYGGRFKMPKGLTDSARDALTGFRRQALHAGLLGFIHPKS 291
Query: 232 NLKLKWRINLPDDISKLIT 250
+ W++ +PDD+ LIT
Sbjct: 292 GEMVSWQVPIPDDMQTLIT 310
>gi|333375616|ref|ZP_08467423.1| ribosomal large subunit pseudouridine synthase D [Kingella kingae
ATCC 23330]
gi|332970080|gb|EGK09077.1| ribosomal large subunit pseudouridine synthase D [Kingella kingae
ATCC 23330]
Length = 371
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 160/257 (62%), Gaps = 19/257 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E + ++ +++ E + + L+I++ED+ +I+LNK AGLVVHPA GN +GTL + L
Sbjct: 81 GGEELSVQIQQSDENQAYEPEHMDLNIVFEDDTVIVLNKPAGLVVHPAAGNWTGTLLNGL 140
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK++SGLMVVAK++ + LV QL+ V+R Y A+ GI
Sbjct: 141 LAHCPELSQVPRAGIVHRLDKDTSGLMVVAKTLPAQNSLVQQLQNRTVKRIYRAVADGIV 200
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGR 183
+G I I R+PHNR+KM V K F K A+T+ + ++ + H S I C+L+TGR
Sbjct: 201 PFDGKIETLIGRDPHNRLKMAVVK-FGGKEAVTHVK-----VLERYHAHSYIECSLETGR 254
Query: 184 THQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPKNNL 233
THQIRVHM+ H + GD +YG K KSL RQALHAY L +HPK+
Sbjct: 255 THQIRVHMKEARHPLAGDPVYGNPRHVCSQPVKDVVKSLA--RQALHAYHLSFVHPKSGE 312
Query: 234 KLKWRINLPDDISKLIT 250
+ + +PDD+ L++
Sbjct: 313 LVSFEAPMPDDMYHLLS 329
>gi|372267910|ref|ZP_09503958.1| ribosomal large subunit pseudouridine synthase D [Alteromonas sp.
S89]
Length = 328
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 164/268 (61%), Gaps = 33/268 (12%)
Query: 5 GYELIIIK----PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
G EL++++ P+ + K + LDIIYEDN I+++NK AGLVVHPA GN TL
Sbjct: 60 GGELLVLRAELEPQGEWLAQK-----MDLDIIYEDNAILVINKPAGLVVHPAAGNPDNTL 114
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL N+PRAGIVHRLDK++SGLMVVAK++++ LV+QLK V R Y A+V
Sbjct: 115 LNGLLAHNAGQHNIPRAGIVHRLDKDTSGLMVVAKTLQAQTDLVDQLKERSVSRLYDAVV 174
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNF---NAKPALTYY---ERLATGIINKKHISL 174
G G ++A + R+ +R+KM V N AK A+T+Y ER + H+ L
Sbjct: 175 QGTLSGGGTVDAPMGRHRTHRLKMAVLPNAGMGGAKEAITHYRLQERF------RSHM-L 227
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK------YSKSLI-----FNRQALHAYK 223
+RC L+TGRTHQIRVHM + H +VGD LYG + S+ L+ F RQALHA +
Sbjct: 228 VRCQLETGRTHQIRVHMAHIRHPLVGDPLYGGRGKLPQGASRELVEALQQFPRQALHAAE 287
Query: 224 LGLIHPKNNLKLKWRINLPDDISKLITF 251
L LIHP++ + W+ +P+D+ +L+
Sbjct: 288 LALIHPESGEPMHWQAPMPEDMLQLLAL 315
>gi|385330268|ref|YP_005884219.1| RluA family pseudouridine synthase [Marinobacter adhaerens HP15]
gi|311693418|gb|ADP96291.1| pseudouridine synthase, RluA family [Marinobacter adhaerens HP15]
Length = 325
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 149/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I LDI+YED ++++NK AGLVVHPA G+ GTL + LL P + N+PRAGIVHR
Sbjct: 79 QAEEISLDIVYEDEHLLVINKPAGLVVHPAAGHADGTLVNALLNYAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LV+QL+ + R+Y A+V G ++A I R+P R
Sbjct: 139 LDKDTSGIMVVARSLIAHTSLVDQLQTRTMGREYEAVVVGTLTGGATVDAPIGRHPRERK 198
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V + KPA+T+Y RL H +RC L++GRTHQIRVHM + H +VGD
Sbjct: 199 KMAVVA--SGKPAVTHY-RLVERFAAHTH---VRCKLESGRTHQIRVHMAHVKHPLVGDP 252
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K + L FNRQALHA +L L HP+ L W + LP+D+ LI
Sbjct: 253 LYGGRLRLPKGTTDELREALSTFNRQALHARQLTLEHPETGEILTWEVPLPEDMVALI 310
>gi|297182616|gb|ADI18775.1| pseudouridylate synthases, 23S RNA-specific [uncultured gamma
proteobacterium HF4000_36I10]
Length = 319
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 149/240 (62%), Gaps = 18/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I + YED +++LNK GLVVHPA G+ GTL + L+E P L +PRAGIVHR
Sbjct: 77 QPQQIDFGLFYEDEHLLVLNKPVGLVVHPAAGHYDGTLVNALIEHCPGLAQLPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGLMVVAK+++++ LV QL+ V R+Y A+V+G+ G ++ + R+P R
Sbjct: 137 LDKDTSGLMVVAKTLEAHTSLVKQLQARNVHREYEALVYGVMTGGGKVDEPMGRHPQQRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V + K A+T+Y II + H S +RC L+TGRTHQIRVHM + H ++GD
Sbjct: 197 KMAVVRA-GGKEAITHYR-----IIERFTHFSHVRCLLETGRTHQIRVHMAHIKHPLIGD 250
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LY K S+ LI F RQALHA KL LIHP + + W +LPDD +L T
Sbjct: 251 ALYAGRLRQPKGASELLIETLRTFRRQALHARKLELIHPATDELVSWETDLPDDFQRLRT 310
>gi|358448457|ref|ZP_09158960.1| RluA family pseudouridine synthase [Marinobacter manganoxydans
MnI7-9]
gi|357227245|gb|EHJ05707.1| RluA family pseudouridine synthase [Marinobacter manganoxydans
MnI7-9]
Length = 325
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 149/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I LDI+YED ++++NK AGLVVHPA G+ GTL + LL P + N+PRAGIVHR
Sbjct: 79 QAEEISLDIVYEDEHLLVINKPAGLVVHPAAGHADGTLVNALLNYAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LV+QL+ + R+Y A+V G ++A I R+P R
Sbjct: 139 LDKDTSGIMVVARSLIAHTSLVDQLQTRTMGREYEAVVVGTLTGGATVDAPIGRHPRERK 198
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V + KPA+T+Y RL H +RC L++GRTHQIRVHM + H +VGD
Sbjct: 199 KMAVVA--SGKPAVTHY-RLVERFAAHTH---VRCKLESGRTHQIRVHMAHVKHPLVGDP 252
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K + L FNRQALHA +L L HP+ L W + LP+D+ LI
Sbjct: 253 LYGGRLRLPKGTTDELREALSAFNRQALHARQLTLEHPETGEILTWEVPLPEDMVALI 310
>gi|339485552|ref|YP_004700080.1| RluA family pseudouridine synthase [Pseudomonas putida S16]
gi|338836395|gb|AEJ11200.1| RluA family pseudouridine synthase [Pseudomonas putida S16]
Length = 352
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 155/240 (64%), Gaps = 17/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK AGLVVHPA G+ SGTL + LL P +INVPRAGIVHR
Sbjct: 109 EAEDIALDIVYEDDQILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIINVPRAGIVHR 168
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++++ +LV+QL+ V R Y +V G+ G I+A I R+ R
Sbjct: 169 LDKDTTGLMVVAKTLQAQTNLVDQLQKRSVSRIYECIVVGVVTAGGKIDAPIGRHGGMRQ 228
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G+ +VGD
Sbjct: 229 RMAVTD--GGKPAISHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGYPLVGDQ 282
Query: 203 LYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG ++ S +++ F RQALHA L L+HP +++W LPDD L++
Sbjct: 283 TYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALVHPTTGERMEWESPLPDDFVWLLSL 342
>gi|431800676|ref|YP_007227579.1| RluA family pseudouridine synthase [Pseudomonas putida HB3267]
gi|430791441|gb|AGA71636.1| RluA family pseudouridine synthase [Pseudomonas putida HB3267]
Length = 320
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 155/240 (64%), Gaps = 17/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK AGLVVHPA G+ SGTL + LL P +INVPRAGIVHR
Sbjct: 77 EAEDIALDIVYEDDQILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIINVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++++ +LV+QL+ V R Y +V G+ G I+A I R+ R
Sbjct: 137 LDKDTTGLMVVAKTLQAQTNLVDQLQKRSVSRIYECIVVGVVTAGGKIDAPIGRHGGMRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G+ +VGD
Sbjct: 197 RMAVTD--GGKPAISHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGYPLVGDQ 250
Query: 203 LYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG ++ S +++ F RQALHA L L+HP +++W LPDD L++
Sbjct: 251 TYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALVHPTTGERMEWESPLPDDFVWLLSL 310
>gi|421529165|ref|ZP_15975711.1| RluA family pseudouridine synthase [Pseudomonas putida S11]
gi|402213368|gb|EJT84719.1| RluA family pseudouridine synthase [Pseudomonas putida S11]
Length = 320
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 155/240 (64%), Gaps = 17/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK AGLVVHPA G+ SGTL + LL P +INVPRAGIVHR
Sbjct: 77 EAEDIALDIVYEDDQILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIINVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++++ +LV+QL+ V R Y +V G+ G I+A I R+ R
Sbjct: 137 LDKDTTGLMVVAKTLQAQTNLVDQLQKRSVSRIYECIVVGVVTAGGKIDAPIGRHGGMRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G+ +VGD
Sbjct: 197 RMAVTD--GGKPAISHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGYPLVGDQ 250
Query: 203 LYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG ++ S +++ F RQALHA L L+HP +++W LPDD L++
Sbjct: 251 TYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALVHPATGERMEWESPLPDDFVWLLSL 310
>gi|120553810|ref|YP_958161.1| RluA family pseudouridine synthase [Marinobacter aquaeolei VT8]
gi|120323659|gb|ABM17974.1| ribosomal large subunit pseudouridine synthase D [Marinobacter
aquaeolei VT8]
Length = 325
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 151/241 (62%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED ++++NK AGLVVHPA G+ GTL + LL P + N+PRAGIVHR
Sbjct: 79 EAEPISLDIVYEDEHLLVINKPAGLVVHPAAGHTDGTLVNALLNYAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LV+QL+ + R+Y A+V G ++A I R+P +R
Sbjct: 139 LDKDTSGIMVVARSLIAHTSLVDQLQTRTMGREYEAVVVGALTGGATVDAPIGRHPQDRK 198
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+M V + KPA+T+Y ER A +L+RC L++GRTHQIRVHM + H +V
Sbjct: 199 RMAVVS--SGKPAVTHYRLLERFAAH-------TLVRCKLESGRTHQIRVHMAHVRHPLV 249
Query: 200 GDNLYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K ++ L F RQALHA +L L HP+ L W + LP+D+ L
Sbjct: 250 GDPAYGGRLRLPKGTTEELRDVLAAFTRQALHARQLTLEHPETGEILSWEVPLPEDMVHL 309
Query: 249 I 249
I
Sbjct: 310 I 310
>gi|387813181|ref|YP_005428662.1| pseudouridine synthase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381338192|emb|CCG94239.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 325
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 151/241 (62%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED ++++NK AGLVVHPA G+ GTL + LL P + N+PRAGIVHR
Sbjct: 79 EAEPISLDIVYEDEHLLVINKPAGLVVHPAAGHADGTLVNALLNYAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LV+QL+ + R+Y A+V G ++A I R+P +R
Sbjct: 139 LDKDTSGIMVVARSLIAHTSLVDQLQTRTMGREYEAVVVGALTGGATVDAPIGRHPQDRK 198
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+M V + KPA+T+Y ER A +L+RC L++GRTHQIRVHM + H +V
Sbjct: 199 RMAVVS--SGKPAVTHYRLLERFAAH-------TLVRCKLESGRTHQIRVHMAHVRHPLV 249
Query: 200 GDNLYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K ++ L F RQALHA +L L HP+ L W + LP+D+ L
Sbjct: 250 GDPAYGGRLRLPKGTTEELRDVLAAFTRQALHARQLTLEHPETGEILSWEVPLPEDMVHL 309
Query: 249 I 249
I
Sbjct: 310 I 310
>gi|88800777|ref|ZP_01116334.1| pseudouridine synthase [Reinekea blandensis MED297]
gi|88776483|gb|EAR07701.1| pseudouridine synthase [Reinekea sp. MED297]
Length = 328
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 150/238 (63%), Gaps = 15/238 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + ++L+++YED +II+++K AGLVVHP G SGT+ + LL YP L VPRAGIVHR
Sbjct: 80 EAEPVELNVVYEDEQIIVIDKPAGLVVHPGAGTPSGTVLNGLLYRYPELAAVPRAGIVHR 139
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVA+++ + HL QL+ + R+Y A+ G+ G++N I R+P +R
Sbjct: 140 LDKDTTGLMVVARTLTAQTHLAGQLQDRSMGREYYALCMGVMTGGGVVNEPIDRHPKHRT 199
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V+ K A+T+Y R+ N +L+RC L+TGRTHQIRVH+ +G+ +VGD
Sbjct: 200 KMAVAPTGMGKDAITHY-RVEQRFRNH---TLVRCKLETGRTHQIRVHLSHIGYPLVGDP 255
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LY K S ++ F RQALHA L LIHP + + W +LP+D L+
Sbjct: 256 LYAGRSRLPKGISPEVMTVLKAFKRQALHAGYLELIHPATDEMVSWESDLPEDFLGLL 313
>gi|225023856|ref|ZP_03713048.1| hypothetical protein EIKCOROL_00722 [Eikenella corrodens ATCC
23834]
gi|224943330|gb|EEG24539.1| hypothetical protein EIKCOROL_00722 [Eikenella corrodens ATCC
23834]
Length = 372
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 147/238 (61%), Gaps = 15/238 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LDI++ED+ +I+LNK AGLVVHPA GN SGTL + LL P L +PRAGIVHRLDK+
Sbjct: 105 MPLDIVFEDDSVIVLNKPAGLVVHPAAGNWSGTLLNGLLAHCPALAEIPRAGIVHRLDKD 164
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVAK+ + LV QL+ V+R Y A+ GI +G I+ I R+PHNR+KM V
Sbjct: 165 TSGLMVVAKTPAAQNSLVQQLQERSVKRIYRAVADGIVPFDGKIDTLIGRDPHNRLKMAV 224
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
F K A+T+ + L + S I C L+TGRTHQIRVHM+ H + D +YG
Sbjct: 225 V-GFGGKKAVTHIKVLE----RYQSHSYIECTLETGRTHQIRVHMREAKHPLAADPVYGN 279
Query: 207 KYSKS--------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
L RQALHAY+L +HP++ +++ LP+DI L++ ++W
Sbjct: 280 PRHPCSDAVKEAVLQLARQALHAYRLSFVHPESGETVQFEAPLPEDIHHLLSV--LRW 335
>gi|386288478|ref|ZP_10065619.1| pseudouridine synthase [gamma proteobacterium BDW918]
gi|385278494|gb|EIF42465.1| pseudouridine synthase [gamma proteobacterium BDW918]
Length = 318
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 152/239 (63%), Gaps = 16/239 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I+LDI+YED+ ++++NK +GLVVHP GN GTL + LL +P + VPRAGIVHR
Sbjct: 77 EAEKIELDIVYEDDHVMVINKPSGLVVHPGAGNPDGTLLNALLNHFPDIATVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD++++GLM+ AK+++++ LV QL+ V R+Y A+V+G G ++ + R+P R
Sbjct: 137 LDRDTTGLMIAAKTLEAHTSLVAQLQAREVHREYDAVVFGTMTGGGTVDEPMGRHPRQRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM VS+ K A+T+Y R+ +N H IRC L+TGRTHQIRVHM + + ++GD
Sbjct: 197 KMAVSQ-IGGKEAITHY-RVTRRFLNHTH---IRCFLETGRTHQIRVHMAHIKYPLIGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LY K S+ LI F RQALHA +L L HP + + W + LP+D+ L+
Sbjct: 252 LYAGRPRLPKGASEVLITQLRGFGRQALHARRLELEHPISGDTMSWEVPLPEDMKALLA 310
>gi|421618249|ref|ZP_16059227.1| pseudouridine synthase [Pseudomonas stutzeri KOS6]
gi|409779803|gb|EKN59454.1| pseudouridine synthase [Pseudomonas stutzeri KOS6]
Length = 324
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLDIVYEDEQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G +NA I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTVNAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 205 VE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMTHLGYPLVGDPLYSG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 259 RFRIPPAASPTLVQSLRDFPRQALHARFLELDHPVTGQRMKWESPLPDDFVWLLTL 314
>gi|170723708|ref|YP_001751396.1| RluA family pseudouridine synthase [Pseudomonas putida W619]
gi|169761711|gb|ACA75027.1| pseudouridine synthase, RluA family [Pseudomonas putida W619]
Length = 352
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 151/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ SGTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 113 IELDIVYEDDQIMVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKD 172
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 173 TTGLMVVAKTLQAQTKLVEQLQSRTVSRIYECIVIGVVTAGGKINAPIGRHGGARQRMAV 232
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
++ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G +VGD YG
Sbjct: 233 TE--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGFPLVGDQTYGG 286
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +++W LPDD L++
Sbjct: 287 RFRIPPAASPTMVEAVKTFPRQALHARFLALDHPTTGERMEWASELPDDFVWLLSL 342
>gi|226941139|ref|YP_002796213.1| RluD [Laribacter hongkongensis HLHK9]
gi|226716066|gb|ACO75204.1| RluD [Laribacter hongkongensis HLHK9]
Length = 349
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 146/232 (62%), Gaps = 13/232 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I++ +IYED +I+++NK AGLV HP GN SGTL + LL P L +VPRAGIVHRLDK+
Sbjct: 94 IEIPVIYEDRQILVVNKPAGLVTHPGNGNWSGTLLNGLLYRVPELAHVPRAGIVHRLDKD 153
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVAK++ + + L+ QL+ V+R Y A+ G + I+ AI R+P R+KM V
Sbjct: 154 TSGLMVVAKTVAAQLDLIRQLQARTVKRHYRAIACGNVAGDITIDKAIGRDPKTRVKMAV 213
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
F KPA+T+ L +H +L+ C L+TGRTHQIRVHM +G + GD LYG
Sbjct: 214 VA-FGGKPAITHVRPLEM----FEHHTLVECRLETGRTHQIRVHMASIGCPLAGDPLYGN 268
Query: 206 -----KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+ I F RQALHA KL LIHP++ + W+ LP D+ L++
Sbjct: 269 PRLPASPEVREAINDFGRQALHAAKLALIHPESKKPVGWKTRLPQDMQYLLS 320
>gi|149377766|ref|ZP_01895499.1| Pseudouridylate synthase, 23S RNA-specific [Marinobacter algicola
DG893]
gi|149357938|gb|EDM46427.1| Pseudouridylate synthase, 23S RNA-specific [Marinobacter algicola
DG893]
Length = 325
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 146/239 (61%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED ++++NK AGLVVHPA G+ GTL + LL P + N+PRAGIVHR
Sbjct: 79 EAESIDLDIVYEDEHLLVINKPAGLVVHPAAGHADGTLVNALLNHAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LV+QL+ + R+Y A+V G ++A I R+P R
Sbjct: 139 LDKDTSGIMVVARSLIAHTSLVDQLQTRTMGREYEAIVVGTLTGGSTVDAPIGRHPRERK 198
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V KPA+T+Y RL H +RC L++GRTHQIRVHM + H +VGD
Sbjct: 199 KMAVVP--TGKPAVTHY-RLVERFAAHTH---VRCKLESGRTHQIRVHMAHVKHPLVGDP 252
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L F RQALHA +L L HP+ L W + LPDDI L+
Sbjct: 253 QYGGRLRLPKGTTDELREVLASFQRQALHARQLTLEHPQTGEILTWEVPLPDDIEGLLA 311
>gi|226943324|ref|YP_002798397.1| Pseudouridine synthase [Azotobacter vinelandii DJ]
gi|226718251|gb|ACO77422.1| Pseudouridine synthase [Azotobacter vinelandii DJ]
Length = 336
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 151/238 (63%), Gaps = 17/238 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I+LDI++ED +I++LNK AGLVVHPA G+ GTL + LL P L+NVPRAGIVHRLD
Sbjct: 96 QAIELDIVHEDEQILVLNKPAGLVVHPAAGHADGTLLNALLHHVPGLVNVPRAGIVHRLD 155
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ LV QL+ V R Y A+V G+ I+A I R+ R +M
Sbjct: 156 KDTTGLMVVAKTLQAQTRLVEQLQKRSVSRIYEAIVVGVITAGATIDAPIGRHGQQRQRM 215
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +Y
Sbjct: 216 AVVE--GGKPAVSHYRVLER---FRAH-THARIKLETGRTHQIRVHMAHVGYSLVGDPVY 269
Query: 205 GKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
G ++ S +L+ F RQALHA L L HP + +LKW LPDD L+T
Sbjct: 270 GGRFRIPPAASPTLVQALREFPRQALHARFLELDHPASGERLKWEAPLPDDFVWLLTL 327
>gi|387128672|ref|YP_006297277.1| ribosomal large subunit pseudouridine synthase D [Methylophaga sp.
JAM1]
gi|386275734|gb|AFI85632.1| Ribosomal large subunit pseudouridine synthase D [Methylophaga sp.
JAM1]
Length = 321
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 159/243 (65%), Gaps = 23/243 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I LDIIYED++++I+NK+AG+VVHP GN +GT+ + LL P L+++PRAGIVHR
Sbjct: 78 QAESIALDIIYEDDDVLIINKAAGMVVHPGAGNQNGTMVNALLAHAPQLMHIPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
+DK+++GL++VAKS++++ L++QL+ V R+Y A+ G+ G ++A + R+ +R
Sbjct: 138 IDKDTTGLLMVAKSLQAHHSLISQLQERTVVREYQAIACGVFTAGGTVDAPVGRHHIDRK 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+M V++ N KPA+T+Y ER + H L RC L+TGRTHQIRVHM + H ++
Sbjct: 198 RMAVTQ--NGKPAVTHYRIEERF------RAHTHL-RCKLETGRTHQIRVHMAHIRHPLL 248
Query: 200 GDNLYGKKY------SKSLIF-----NRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG ++ + S + +RQALHA LG HP + W+I LPDD+ +L
Sbjct: 249 GDPLYGGRFKTPKGMTDSCLAALQNTHRQALHAGLLGFDHPTTREAVSWQIPLPDDMQRL 308
Query: 249 ITF 251
+
Sbjct: 309 LEL 311
>gi|254283218|ref|ZP_04958186.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium NOR51-B]
gi|219679421|gb|EED35770.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium NOR51-B]
Length = 319
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 156/267 (58%), Gaps = 32/267 (11%)
Query: 9 IIIKPKKNFFLN-------KTEKKV------IKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
++++PK L+ + E +V + LDI YED+++I++NK AGLVVHPA G+
Sbjct: 50 VVLRPKDKVALDNQLELIAEAEAEVAWSGESLPLDICYEDDDVIVVNKPAGLVVHPAAGH 109
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
+GTL + LL P L PR GIVHRLDK++SG+M VAKS +++ LV QL V R+
Sbjct: 110 PTGTLVNALLAHAPELQQQPRGGIVHRLDKDTSGVMFVAKSHRAHRSLVTQLSARSVTRE 169
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISL 174
Y A+ G G I+ I R+P R KM V + KPA+T++ + N+ +H +
Sbjct: 170 YAALCSGQLVAGGTIDQPIGRHPTARTKMAVVS--DGKPAITHFR-----VANRFEHFTQ 222
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS---------KSLI--FNRQALHAYK 223
++ NL+TGRTHQIRVHM W H +VGD +YG + KS + F RQALHA
Sbjct: 223 LQVNLETGRTHQIRVHMAWCRHPLVGDPVYGGRLRIPAGISDRLKSALADFQRQALHARS 282
Query: 224 LGLIHPKNNLKLKWRINLPDDISKLIT 250
LG HP ++++ NLPDD L+
Sbjct: 283 LGFDHPATGERMQFDANLPDDFRGLLA 309
>gi|296135788|ref|YP_003643030.1| RluA family pseudouridine synthase [Thiomonas intermedia K12]
gi|295795910|gb|ADG30700.1| pseudouridine synthase, RluA family [Thiomonas intermedia K12]
Length = 342
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 140/227 (61%), Gaps = 2/227 (0%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L++++ED ++ +LNK AGLVVHPA GN SGTL + LL YP +PRAGIVHRLDK+
Sbjct: 107 LPLNVVFEDADLAVLNKPAGLVVHPAAGNWSGTLLNGLLARYPETAGLPRAGIVHRLDKD 166
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV A+++++ LV +L+ + R+YLA+ WG + A I R+P +R++M V
Sbjct: 167 TSGLMVTARTLEAQTELVRRLQARTIHRQYLALAWGSVSRAFNVEAPIGRHPRDRLRMAV 226
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA T + LA ++ +RC L +GRTHQIRVH+Q+ +V D++YG
Sbjct: 227 V--HGGKPARTDFTPLAELDTRWGPLTALRCKLHSGRTHQIRVHLQFAKLEMVADSVYGG 284
Query: 207 KYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSG 253
+ L RQALHA +L HP N+ + + +PDDI+ G
Sbjct: 285 RLRPDLPLQRQALHAARLAFAHPLNDKPMDFIAPIPDDIASFWDACG 331
>gi|410693527|ref|YP_003624148.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Thiomonas sp. 3As]
gi|294339951|emb|CAZ88314.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Thiomonas sp. 3As]
Length = 342
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 140/227 (61%), Gaps = 2/227 (0%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L++++ED ++ +LNK AGLVVHPA GN SGTL + LL YP +PRAGIVHRLDK+
Sbjct: 107 LPLNVVFEDADLAVLNKPAGLVVHPAAGNWSGTLLNGLLARYPETAGLPRAGIVHRLDKD 166
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV A+++++ LV +L+ + R+YLA+ WG + A I R+P +R++M V
Sbjct: 167 TSGLMVTARTLEAQTELVRRLQARTIHRQYLALAWGSVSRAFNVEAPIGRHPRDRLRMAV 226
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA T + LA ++ +RC L +GRTHQIRVH+Q+ +V D++YG
Sbjct: 227 V--HGGKPARTDFTPLAELDTRWGPLTALRCKLHSGRTHQIRVHLQFAKLEMVADSVYGG 284
Query: 207 KYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSG 253
+ L RQALHA +L HP N+ + + +PDDI+ G
Sbjct: 285 RLRPDLPLQRQALHAARLAFAHPLNDKPMDFIAPIPDDIASFWDACG 331
>gi|127513878|ref|YP_001095075.1| RluA family pseudouridine synthase [Shewanella loihica PV-4]
gi|126639173|gb|ABO24816.1| ribosomal large subunit pseudouridine synthase D [Shewanella
loihica PV-4]
Length = 323
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 157/258 (60%), Gaps = 19/258 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G E+ I K K E + I LDI+YED+ II++NK AGLVVHP GN GTL
Sbjct: 59 VLEGQEIEIEATLKEEI--KAEAQAIDLDIVYEDDHIIVINKQAGLVVHPGAGNSDGTLM 116
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P + VPRAGIVHRLDK+++GLMVVAK++++ HLV L+ + R+Y A+V
Sbjct: 117 NALLHHCPEIELVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVS 176
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G+++ I R+P R M V + + +P++T+Y R+A + H L R L+T
Sbjct: 177 GTMTAGGVVDEPIARHPTKRTHMAV--HHSGRPSVTHY-RVAEKF--RAHTRL-RLRLET 230
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM +GH +VGD +YG KK + L+ F RQALHA +L L HP
Sbjct: 231 GRTHQIRVHMAHIGHILVGDPVYGGRPRPPKKATPELMEALNGFKRQALHAVRLELAHPF 290
Query: 231 NNLKLKWRINLPDDISKL 248
+ W+ +P+D+ L
Sbjct: 291 TCEIMSWQAPIPEDMVAL 308
>gi|399543780|ref|YP_006557088.1| ribosomal large subunit pseudouridine synthase D [Marinobacter sp.
BSs20148]
gi|399159112|gb|AFP29675.1| Ribosomal large subunit pseudouridine synthase D [Marinobacter sp.
BSs20148]
Length = 325
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 152/242 (62%), Gaps = 23/242 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I LDI+YED I+I+NK AGLVVHPA G+ GTL + +L I P + N+PRAGIVHR
Sbjct: 79 QAEAITLDIVYEDEHILIINKPAGLVVHPAAGHADGTLVNAILNIAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LVNQL+ + R+Y A+V G ++A I R+P R
Sbjct: 139 LDKDTSGVMVVARSLIAHTSLVNQLQTRTMGREYEAVVVGTLTGGATVDAPIGRHPTERK 198
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+M V K + KPA+T+Y ER A + +RC L++GRTHQIRVH+ + H +V
Sbjct: 199 RMAVVK--SGKPAVTHYRVIERFAAH-------THVRCKLESGRTHQIRVHLTHVKHPLV 249
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD +YG K ++ L F+RQALHA +L L HP+ + W + LP+D L
Sbjct: 250 GDPVYGGRLRLPKGTTEELREVLSGFHRQALHARQLTLEHPQTGETMSWDVPLPEDFQLL 309
Query: 249 IT 250
+
Sbjct: 310 LA 311
>gi|212558158|gb|ACJ30612.1| Pseudouridine synthase, RluD [Shewanella piezotolerans WP3]
Length = 328
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 155/258 (60%), Gaps = 19/258 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G E+I++ + K E I LDI+YED+ I+++NK AGLVVHP GN GTL
Sbjct: 64 VLEGQEIIVLATLEEETSAKAE--AIDLDIVYEDDHILVINKQAGLVVHPGAGNQDGTLM 121
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P + VPRAGIVHRLDK+++GLMVVAK++++ HLV L+ + R+Y A+V
Sbjct: 122 NALLHHCPGIELVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVTALQAREITREYEAIVQ 181
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G ++ I R+P R M V N KPA+T+Y R+A + H L R L++
Sbjct: 182 GGIIAGGTVDEPIDRHPTKRTHMAVV--HNGKPAMTHY-RVAEKF--RAHTRL-RLRLES 235
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPK 230
GRTHQIRVHM ++GH +VGD +Y + + + F RQALHA +L L HP
Sbjct: 236 GRTHQIRVHMAYIGHVLVGDPVYAGRPRPPKGAAPDFFETYMGFKRQALHAIRLELAHPF 295
Query: 231 NNLKLKWRINLPDDISKL 248
+ W+ +PDD+ KL
Sbjct: 296 TCEIMSWQAPVPDDMVKL 313
>gi|410638113|ref|ZP_11348678.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
lipolytica E3]
gi|410142310|dbj|GAC15883.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
lipolytica E3]
Length = 327
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 157/266 (59%), Gaps = 30/266 (11%)
Query: 9 IIIKPKKNFF----------LNKTEKKV---IKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
+ KP++ F L K E V I+L+I+YED I+++NK LVVHP GN
Sbjct: 54 VCDKPREKVFGGEQVSLDAVLEKQENHVAQNIELNIVYEDEHILVINKPTDLVVHPGAGN 113
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL P + +VPRAGIVHRLDK+++GLMVVAK++ + HLV QL+ + R+
Sbjct: 114 ADGTVLNALLSHAPEVASVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVEQLQAREISRE 173
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
Y A+V+G G+++A I R+P R M V + KPA T+Y R+ H +
Sbjct: 174 YEAVVYGTMVAGGIVDAPIGRHPTKRTSMAVRE--TGKPAATHY-RIKQKFRAHTH---L 227
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKL 224
R L+TGRTHQIRVHM L + +VGD LYG K S+++I F RQALHA +L
Sbjct: 228 RLKLETGRTHQIRVHMSHLRYPLVGDALYGGRPRLPKACSEAMINMLRGFKRQALHAIQL 287
Query: 225 GLIHPKNNLKLKWRINLPDDISKLIT 250
L HP + W+ LPDD+ KL++
Sbjct: 288 ELAHPTTGEWMSWQAPLPDDMVKLLS 313
>gi|345863957|ref|ZP_08816163.1| ribosomal large subunit pseudouridine synthase D [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345124864|gb|EGW54738.1| ribosomal large subunit pseudouridine synthase D [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 318
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 151/240 (62%), Gaps = 19/240 (7%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
+ + I LDI++ED ++++NK AGLVVHPA+GN GTL + LL +P + VPR GIVH
Sbjct: 77 SRPQPIPLDILFEDESLLVVNKPAGLVVHPAVGNPDGTLLNALLHYFPAISQVPRGGIVH 136
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLDK +SGL+VVAK++++ LV QL+ ++R+Y A G+ G ++A I R+P +R
Sbjct: 137 RLDKETSGLLVVAKTLQAQTALVAQLQARSMKREYRAFAQGVMAAGGKVDAPIGRHPVHR 196
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
+M V N KPA+T+Y +I + + +R L+TGRTHQIRVHM + +VG
Sbjct: 197 TRMAVVA--NGKPAVTHYR-----VIERYRFHTDLRIQLETGRTHQIRVHMAQIRFPLVG 249
Query: 201 DNLYGKKY------SKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D +YG + S +L F RQALHA +L L+HP++ ++ W LP+D+ +L+
Sbjct: 250 DPVYGGRLRLPTGISDALAEGLRAFKRQALHARRLELVHPESGEQMSWEAPLPEDMEQLL 309
>gi|292493653|ref|YP_003529092.1| pseudouridine synthase [Nitrosococcus halophilus Nc4]
gi|291582248|gb|ADE16705.1| pseudouridine synthase, RluA family [Nitrosococcus halophilus Nc4]
Length = 321
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 149/240 (62%), Gaps = 17/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L+I+YED II++NK AGLVVHPA GN GTL + LL P L +PRAGIVHR
Sbjct: 77 QAQPLPLEIVYEDEAIIVVNKPAGLVVHPAAGNRDGTLVNALLNHAPELAEIPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGL+VVA+++ ++ LV QL V R+Y A+ G+ G+I A I R+P +R
Sbjct: 137 LDKDTSGLLVVARTLTAHHGLVQQLHARRVTRQYRAIAVGVMTGGGIIEAPIHRHPVDRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V KPA+T+Y A + H + C L+TGRTHQIRVH+ +G+ ++GD
Sbjct: 197 RMAVVS--TGKPAITHYRVRAR---FRAHTD-VSCRLETGRTHQIRVHLAHIGYPLLGDP 250
Query: 203 LYGKK----------YSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YGK+ S +L F RQALHA +LGL+HP+ + W LP+D+S L+
Sbjct: 251 TYGKRLHIPRESGEELSTALRHFKRQALHAARLGLLHPERKQAMSWEAPLPEDMSTLLAL 310
>gi|345877571|ref|ZP_08829314.1| peptide deformylase [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344225394|gb|EGV51754.1| peptide deformylase [endosymbiont of Riftia pachyptila (vent Ph05)]
Length = 325
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 151/240 (62%), Gaps = 19/240 (7%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
+ + I LDI++ED ++++NK AGLVVHPA+GN GTL + LL +P + VPR GIVH
Sbjct: 84 SRPQPIPLDILFEDESLLVVNKPAGLVVHPAVGNPDGTLLNALLHYFPAISQVPRGGIVH 143
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLDK +SGL+VVAK++++ LV QL+ ++R+Y A G+ G ++A I R+P +R
Sbjct: 144 RLDKETSGLLVVAKTLQAQTALVAQLQARSMKREYRAFAQGVMAAGGKVDAPIGRHPVHR 203
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
+M V N KPA+T+Y +I + + +R L+TGRTHQIRVHM + +VG
Sbjct: 204 TRMAVVA--NGKPAVTHYR-----VIERYRFHTDLRIQLETGRTHQIRVHMAQIRFPLVG 256
Query: 201 DNLYGKKY------SKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D +YG + S +L F RQALHA +L L+HP++ ++ W LP+D+ +L+
Sbjct: 257 DPVYGGRLRLPTGISDALAEGLRAFKRQALHARRLELVHPESGEQMSWEAPLPEDMEQLL 316
>gi|160900458|ref|YP_001566040.1| RluA family pseudouridine synthase [Delftia acidovorans SPH-1]
gi|160366042|gb|ABX37655.1| pseudouridine synthase, RluA family [Delftia acidovorans SPH-1]
Length = 356
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 156/261 (59%), Gaps = 15/261 (5%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+ +G +++ ++P + + E + LD++YED ++++NK AGLVVHPA GN +GTL
Sbjct: 99 VAAGDRMVLEMRPTQQSMAFQPED--MALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTL 156
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM- 119
+ LL P VPRAGIVHRLDK++SGLMVVA+S + LV + V R+YLA+
Sbjct: 157 LNGLLGRDPKAREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALA 216
Query: 120 --VWGIPKLNGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLI 175
WG P+ + ++A I R+P NR++M V K A T + LA + +SL+
Sbjct: 217 HKAWG-PRKHREVDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLA----GNEEVSLV 271
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKL 235
RC L TGRTHQIRVHM LGH +V D +YG K + + RQALHA++L HP L
Sbjct: 272 RCTLHTGRTHQIRVHMASLGHPLVADAVYGGKEAGGMA--RQALHAFRLAFTHPMTGQAL 329
Query: 236 KWRINLPDDISKLITFSGIKW 256
R LP D+++ + G+ +
Sbjct: 330 VLRAPLPPDMAQALENWGLSY 350
>gi|333907081|ref|YP_004480667.1| RluA family pseudouridine synthase [Marinomonas posidonica
IVIA-Po-181]
gi|333477087|gb|AEF53748.1| pseudouridine synthase, RluA family [Marinomonas posidonica
IVIA-Po-181]
Length = 327
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 148/238 (62%), Gaps = 16/238 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + LDI+YED +I+I+NK AGLVVHPA+GN GTL + +L P +VPRAGIVHR
Sbjct: 77 QAQEMDLDIVYEDEDIMIINKPAGLVVHPAVGNRDGTLMNAILHHAPETAHVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK ++GLMVVAK++ + LV QL+ + R+Y A+ G+ G+++ I R+PHNR
Sbjct: 137 LDKETTGLMVVAKTLVAQTDLVAQLQERSMGREYEAISIGVMTGGGIVDEPIGRHPHNRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
K V + N K A+T+Y RL N H IR L+TGRTHQIRVHM + + +VGD
Sbjct: 197 KQAV-EPVNGKDAVTHY-RLVNRYKNHTH---IRLKLETGRTHQIRVHMAHIQYPLVGDP 251
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S L F RQALHA KL L HP ++W I+LPDD+ L+
Sbjct: 252 QYGGRLKMPKACSPELQEALRDFRRQALHAKKLELAHPTTGEWMEWEIDLPDDMQHLL 309
>gi|388256841|ref|ZP_10134022.1| pseudouridine synthase, RluA family subfamily [Cellvibrio sp. BR]
gi|387940541|gb|EIK47091.1| pseudouridine synthase, RluA family subfamily [Cellvibrio sp. BR]
Length = 321
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 151/238 (63%), Gaps = 16/238 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI++ED+++II+NK AGLVVHPA GN +GTL + LL P LIN+PRAGIVHR
Sbjct: 77 EPEEITLDIVHEDDDLIIINKQAGLVVHPAAGNYTGTLVNALLNHIPGLINLPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK ++GLMV+AK+++++ LV QL V R+Y A+ G G ++A + R+P R
Sbjct: 137 LDKETTGLMVIAKTLEAHTDLVEQLSDRTVSREYEAVAVGAMTGGGTVDAPMGRHPIQRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + K A+T+Y R+A + H IR L+TGRTHQIRVHM +GH +VGD
Sbjct: 197 LMAVL-SAGGKRAVTHY-RVAKRYPHHTH---IRVKLETGRTHQIRVHMAHIGHPLVGDQ 251
Query: 203 LYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG ++ ++ LI F RQALHA+KLGL HP +W +P+D L+
Sbjct: 252 TYGNRFKIPKGANQHLIDTLKGFPRQALHAFKLGLEHPGTGEYTEWTAPIPEDFRNLL 309
>gi|146283956|ref|YP_001174109.1| pseudouridine synthase [Pseudomonas stutzeri A1501]
gi|339495685|ref|YP_004715978.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|386022310|ref|YP_005940335.1| pseudouridine synthase [Pseudomonas stutzeri DSM 4166]
gi|145572161|gb|ABP81267.1| pseudouridine synthase [Pseudomonas stutzeri A1501]
gi|327482283|gb|AEA85593.1| pseudouridine synthase [Pseudomonas stutzeri DSM 4166]
gi|338803057|gb|AEJ06889.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 324
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLDIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 205 VE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMTHLGYPLVGDPLYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 259 RFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKWESPLPDDFVWLLTL 314
>gi|333913244|ref|YP_004486976.1| RluA family pseudouridine synthase [Delftia sp. Cs1-4]
gi|333743444|gb|AEF88621.1| pseudouridine synthase, RluA family [Delftia sp. Cs1-4]
Length = 356
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 155/261 (59%), Gaps = 15/261 (5%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+ +G +++ ++P + + E + LD++YED ++++NK AGLVVHPA GN +GTL
Sbjct: 99 VAAGDRMVLEMRPTQQSMAFQPED--MALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTL 156
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM- 119
+ LL P VPRAGIVHRLDK++SGLMVVA+S + LV + V R+YLA+
Sbjct: 157 LNGLLGRDPKAREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALA 216
Query: 120 --VWGIPKLNGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLI 175
WG P+ ++A I R+P NR++M V K A T + LA + +SL+
Sbjct: 217 HKAWG-PRKRREVDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLA----GNEEVSLV 271
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKL 235
RC L TGRTHQIRVHM LGH +V D +YG K + + RQALHA++L HP L
Sbjct: 272 RCTLHTGRTHQIRVHMASLGHPLVADAVYGGKEAGGMA--RQALHAFRLAFTHPMTGQAL 329
Query: 236 KWRINLPDDISKLITFSGIKW 256
R LP D+++ + G+ +
Sbjct: 330 VLRAPLPPDMAQALENWGLSY 350
>gi|126666670|ref|ZP_01737647.1| Pseudouridylate synthases, 23S RNA-specific [Marinobacter sp.
ELB17]
gi|126628715|gb|EAZ99335.1| Pseudouridylate synthases, 23S RNA-specific [Marinobacter sp.
ELB17]
Length = 325
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 151/239 (63%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I LDI+YED I+I+NK AGLVVHPA G+ GTL + +L I P + N+PRAGIVHR
Sbjct: 79 QAEAITLDIVYEDEHILIINKPAGLVVHPAAGHADGTLVNAILNIAPEVENLPRAGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG+MVVA+S+ ++ LVNQL+ + R+Y A+V G ++A I R+P R
Sbjct: 139 LDKDTSGVMVVARSLIAHTSLVNQLQTRTMGREYEAVVVGTLTGGATVDAPIGRHPTERK 198
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V K + KPA+T+Y R+ H +RC L++GRTHQIRVH+ + H +VGD
Sbjct: 199 RMAVVK--SGKPAVTHY-RVIERFSAHTH---VRCKLESGRTHQIRVHLTHVKHPLVGDP 252
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+YG K ++ L F+RQALHA +L L HP+ + W + LP+D L+
Sbjct: 253 VYGGRLRLPKGTTEELREVLSGFHRQALHARQLTLEHPQTGETMSWDVPLPEDFQLLLA 311
>gi|383318062|ref|YP_005378904.1| RluA family pseudouridine synthase [Frateuria aurantia DSM 6220]
gi|379045166|gb|AFC87222.1| pseudouridine synthase, RluA family [Frateuria aurantia DSM 6220]
Length = 317
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 145/235 (61%), Gaps = 21/235 (8%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSG 89
DI+Y+D++++++NK AGLVVHP GN SGT+ + LL +PR GIVHRLDK++SG
Sbjct: 83 DIVYQDDDLLVINKPAGLVVHPGAGNSSGTVLNALLHFDARQAELPRGGIVHRLDKDTSG 142
Query: 90 LMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKN 149
LMVVA+S+ ++ LV++L H V R Y A+V G G ++AAI R+ +R++ +V
Sbjct: 143 LMVVARSLAAHTALVDRLSRHEVVRHYAAVVMGTMIAGGTVDAAIGRHLSDRLRQSVRDE 202
Query: 150 FNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA+T+Y ER + H +L++C L+TGRTHQIRVHM +GH +VGD LYG
Sbjct: 203 EDGKPAVTHYRLRERF------RAH-TLVQCQLETGRTHQIRVHMAHIGHALVGDPLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S L+ F RQALHA L HP + + +PDD+ L+
Sbjct: 256 GLRLPKGASPELVEALRGFRRQALHAEHLAFEHPLTGEPMAFDAAIPDDMQALLA 310
>gi|398844026|ref|ZP_10601136.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM84]
gi|398254995|gb|EJN40042.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM84]
Length = 352
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 153/236 (64%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ SGTL + LL P +INVPRAGIVHRLDK+
Sbjct: 113 IELDIVYEDDQILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIINVPRAGIVHRLDKD 172
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 173 TTGLMVVAKTLQAQTKLVEQLQSRTVSRIYECIVVGVVIAGGKIDAPIGRHGGVRQRMAV 232
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
++ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G+ +VGD YG
Sbjct: 233 TE--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGYPLVGDQTYGV 286
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +++W LPDD + L++
Sbjct: 287 RFRIPPAASVAMVEAVKNFPRQALHARFLALDHPTTGERMEWASPLPDDFTWLLSL 342
>gi|357404578|ref|YP_004916502.1| rRNA pseudouridylate synthase D [Methylomicrobium alcaliphilum 20Z]
gi|351717243|emb|CCE22908.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Methylomicrobium alcaliphilum 20Z]
Length = 314
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 162/262 (61%), Gaps = 24/262 (9%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E I + + L + E + I LDI+YED ++I+NK AGLVVHPA+GN +GTL +
Sbjct: 55 VEGGEFIELDAEAEVVL-ECEAEAIPLDIVYEDESLLIINKPAGLVVHPAVGNWTGTLQN 113
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L +PRAGIVHR+DK +SGL++VAK++ ++ LV QL+ ++R+YLA+ G
Sbjct: 114 ALLNHVPSLETLPRAGIVHRIDKETSGLLMVAKTLPAHNSLVKQLQERSIEREYLAITKG 173
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNL 179
I+ I R+P +R + +V + K A+T+Y ER A +H SLIR L
Sbjct: 174 RIIAGATIDEPIGRHPTDRKRYSVRQ--TGKDAVTHYRVVERFA------RH-SLIRVKL 224
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKY------SKSL-----IFNRQALHAYKLGLIH 228
+TGRTHQIRVHM ++ +VGD +YG ++ S+ L F RQALHA KLGL+H
Sbjct: 225 ETGRTHQIRVHMAYVHFPLVGDPVYGGRFQLPPDCSEQLEIELRAFKRQALHAEKLGLLH 284
Query: 229 PKNNLKLKWRINLPDDISKLIT 250
P+ +W LPDD+ +L+
Sbjct: 285 PETQEYCEWIQPLPDDMIRLLA 306
>gi|308048517|ref|YP_003912083.1| ribosomal large subunit pseudouridine synthase D [Ferrimonas
balearica DSM 9799]
gi|307630707|gb|ADN75009.1| ribosomal large subunit pseudouridine synthase D [Ferrimonas
balearica DSM 9799]
Length = 323
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK A LVVHP GN GT+ + LL P + NVPRAGIVHRLDK+
Sbjct: 82 IALDIVYEDDDILVINKPADLVVHPGAGNHDGTVLNALLHHCPSIANVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I + HLV QL+ + R+Y A+ G+ G ++ I R+P R M V
Sbjct: 142 TTGLMVVAKTIPAQTHLVAQLQAREITREYEAIALGVMTAGGHVDEPIGRHPQRRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
++ KPA+T+Y R+ + H L R L+TGRTHQIRVHM LGH +VGD LY
Sbjct: 202 TE--LGKPAVTHY-RIREKF--RAHTRL-RLRLETGRTHQIRVHMAHLGHPLVGDPLYSG 255
Query: 206 -----KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
K +S+ L FNRQALHA L L HP ++W +PDD+ +L
Sbjct: 256 RPRPVKGWSEELREFLRRFNRQALHAAMLRLEHPITGEMMQWTAPIPDDMVRLTEL 311
>gi|407715563|ref|YP_006836843.1| ribosomal large subunit pseudouridine synthase D [Cycloclasticus
sp. P1]
gi|407255899|gb|AFT66340.1| Ribosomal large subunit pseudouridine synthase D [Cycloclasticus
sp. P1]
Length = 330
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 163/258 (63%), Gaps = 18/258 (6%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
++G E +II P + LN + + I L+I+YED ++++NK AGLVVHPA GN GTL +
Sbjct: 70 VNGGEAVIITPIADTSLN-IKAEPIALNIVYEDESMLVVNKPAGLVVHPAAGNWDGTLQN 128
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L +PRAG+VHR+DK +SGL++VA+++ ++ LV+QL+ +R+YL +V G
Sbjct: 129 ALLHHDPALEGLPRAGLVHRIDKETSGLLMVARTLTAHKLLVDQLQARAFEREYLTVVRG 188
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G ++A + R+P +R K V + K A+T+Y R+A KH +L++ NL+TG
Sbjct: 189 YMTAGGTVDAPLARHPTDRKKYAVRE--GGKEAITHY-RVAQRF--AKH-TLLKVNLETG 242
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKY-----SKSLI------FNRQALHAYKLGLIHPKN 231
RTHQIRVHM + H IVGD +YG ++ + L+ F RQALHA +LG++HP
Sbjct: 243 RTHQIRVHMSHINHAIVGDQVYGGRFKPLANASELLSDTLRGFKRQALHAARLGVVHPVT 302
Query: 232 NLKLKWRINLPDDISKLI 249
+ W +P D++ L+
Sbjct: 303 GEPISWECEMPADMAHLV 320
>gi|30248520|ref|NP_840590.1| rluD; ribosomal large subunit pseudouridine synthase D
[Nitrosomonas europaea ATCC 19718]
gi|34395760|sp|Q82WZ5.1|RLUD_NITEU RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|30138406|emb|CAD84416.1| rluD; ribosomal large subunit pseudouridine synthase D
[Nitrosomonas europaea ATCC 19718]
Length = 344
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 150/233 (64%), Gaps = 12/233 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L I++ED+ +II++K AGLVVHP GN GTL + LL P L VPRAGIVHR
Sbjct: 103 QAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHR 162
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL+VVAK+I++ L QL+ V+R YLA+V G + +G+++A I R+P +R
Sbjct: 163 LDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVDAPIGRHPIHRT 222
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V + N KPA T+Y L + +L+ C+L+TGRTHQIRVH+ +GH + GD
Sbjct: 223 RMAVVQ--NGKPARTHYRVLEKFTAS----TLLHCSLETGRTHQIRVHLLSIGHPLAGDP 276
Query: 203 LYGKKYSKSLIFN------RQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG+ + RQALHA++L L HP + L W LPDD++ L+
Sbjct: 277 VYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLPDDMAALL 329
>gi|261342024|ref|ZP_05969882.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
cancerogenus ATCC 35316]
gi|288315680|gb|EFC54618.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
cancerogenus ATCC 35316]
Length = 326
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 149/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK GLVVHP GN GT+ + LL YP +I+VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPPIIDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTHLVESLQLREITREYEAVAIGHMTSGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEEFISVLRKFDRQALHATMLRLYHPVTGIQMEWHAPIPQDMVELI 309
>gi|15837541|ref|NP_298229.1| ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa 9a5c]
gi|34395837|sp|Q9PET9.1|RLUD_XYLFA RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|9105864|gb|AAF83749.1|AE003933_1 ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa 9a5c]
Length = 331
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + +LNK AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLDILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 208 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 259 YGGSLKLPKVGTDALVVMLRGFKRQALHAEVLEFLHPVGALPVRIVAPVPEDLCQLLA 316
>gi|429334367|ref|ZP_19215033.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas putida CSV86]
gi|428760944|gb|EKX83192.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas putida CSV86]
Length = 320
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 151/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPGIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTLEAQTSLVTQLQSRTVSRIYECIVVGVVTAGGKINAPIGRHGGQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
++ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD +YG
Sbjct: 201 TE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHVNFPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP+ ++KW LPDD L++
Sbjct: 255 RFRIPPAASPTMVEAVKTFPRQALHARFLELEHPETGKRMKWESPLPDDFVWLLSL 310
>gi|389793064|ref|ZP_10196240.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter
fulvus Jip2]
gi|388435201|gb|EIL92118.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter
fulvus Jip2]
Length = 324
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/264 (41%), Positives = 158/264 (59%), Gaps = 24/264 (9%)
Query: 1 MIISGYELIIIKPK-KNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGT 59
++ G E ++++ + +N + E I LDI++ED+ +++LNK AGLVVHP GN +GT
Sbjct: 55 QLLRGGEQVVLQAELENEVTSAPED--IALDIVHEDDHLLVLNKPAGLVVHPGAGNPAGT 112
Query: 60 LFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
L + LL P L +PRAGIVHRLDK++SGLMVVA+++ +Y LV+ L H V+R+Y A+
Sbjct: 113 LLNALLFHDPKLAELPRAGIVHRLDKDTSGLMVVARTLPTYTALVDLLSRHEVERQYEAV 172
Query: 120 VWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIR 176
V G G ++ I R+ +R++ V + K A+T+Y ER + H SL++
Sbjct: 173 VLGTMVAGGTVDEPIGRSMGDRLRQAVRDEEDGKRAVTHYRLRERF------RAH-SLVQ 225
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLG 225
C L+TGRTHQIRVH+ + H +VGD LYG K S L F RQALHA KL
Sbjct: 226 CQLETGRTHQIRVHLAHIQHPLVGDPLYGGGLKLPKGASAELAATLRGFRRQALHAEKLS 285
Query: 226 LIHPKNNLKLKWRINLPDDISKLI 249
+HP + + P+D+ LI
Sbjct: 286 FVHPATGETMSFSAERPEDLQLLI 309
>gi|387888296|ref|YP_006318594.1| 23S rRNA pseudouridine synthase [Escherichia blattae DSM 4481]
gi|414595939|ref|ZP_11445543.1| 23S rRNA pseudouridine synthase RluD [Escherichia blattae NBRC
105725]
gi|386923129|gb|AFJ46083.1| 23S rRNA pseudouridine synthase [Escherichia blattae DSM 4481]
gi|403193096|dbj|GAB83195.1| 23S rRNA pseudouridine synthase RluD [Escherichia blattae NBRC
105725]
Length = 326
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 149/239 (62%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++II++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDIIVINKPRGLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 QMAVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+YG K S I F+RQALHA L L HP + ++++W +PDD+ +LI
Sbjct: 252 VYGGRPRPPKHASDKFIDVLRRFDRQALHATMLRLYHPVSGIQMEWHAPIPDDMVELIA 310
>gi|78485714|ref|YP_391639.1| pseudouridine synthase RluD [Thiomicrospira crunogena XCL-2]
gi|78364000|gb|ABB41965.1| ribosomal large subunit pseudouridine synthase D [Thiomicrospira
crunogena XCL-2]
Length = 352
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 151/238 (63%), Gaps = 16/238 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I ++++YED +I++LNK AGLVVHP GN GTL + LL Y + VPRAGIVHR
Sbjct: 77 QAQDIPIEVVYEDEDILVLNKPAGLVVHPGAGNPDGTLLNALLFHYETIREVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK +SGLMVVAK++ + HLV QL+ H V+R Y A+V G G I+ I R+P +R
Sbjct: 137 LDKETSGLMVVAKNVPAQTHLVEQLQQHDVERVYDAIVVGKMISGGTISKPIGRHPTDRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V KPA ++Y L ++H + +R L+TGRTHQIRVHM +LG +VGD
Sbjct: 197 RMAVL-TVGGKPATSHYRVLER---FREH-THVRVKLETGRTHQIRVHMAYLGFPLVGDP 251
Query: 203 LYGKK----------YSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+Y + ++ L F RQALHA +L L HP+ +KW++++PDD+ +LI
Sbjct: 252 VYAGRLRIPQQMMPEFADYLRGFKRQALHAGQLSLTHPRTGKTMKWKVSMPDDMLELI 309
>gi|254785221|ref|YP_003072649.1| ribosomal large subunit pseudouridine synthase D [Teredinibacter
turnerae T7901]
gi|237685566|gb|ACR12830.1| ribosomal large subunit pseudouridine synthase D [Teredinibacter
turnerae T7901]
Length = 333
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 147/232 (63%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I LD++YED I++LNK AGLVVHPA GN +GTL + L+ +PRAGIVHRLD
Sbjct: 96 EPIPLDVVYEDEAILVLNKPAGLVVHPAAGNYTGTLLNGLIHHRQAQSLLPRAGIVHRLD 155
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K++SGLMVVAK+ + +LV QL+ V+R+Y A+ G + +G ++A I R+P NR +M
Sbjct: 156 KDTSGLMVVAKTTAAQNNLVAQLQARTVKREYEALAIGEVRSSGFVDAPIGRHPTNRTRM 215
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+T+Y T + + +R L+TGRTHQIRVHM LG+ +VGD +Y
Sbjct: 216 AVVS--SGKPAVTHY----TALARFDGFTHLRLQLETGRTHQIRVHMAHLGYPLVGDPVY 269
Query: 205 GKKYSKSLI-----------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G++ L+ RQALHA +LGL HP + L+W++ L +DI
Sbjct: 270 GRRLPAKLLRENPDLVPLSSLPRQALHAVQLGLQHPASGEYLQWQVPLAEDI 321
>gi|183597510|ref|ZP_02959003.1| hypothetical protein PROSTU_00783 [Providencia stuartii ATCC 25827]
gi|386742538|ref|YP_006215717.1| 23S rRNA pseudouridine synthase D [Providencia stuartii MRSN 2154]
gi|188023155|gb|EDU61195.1| ribosomal large subunit pseudouridine synthase D [Providencia
stuartii ATCC 25827]
gi|384479231|gb|AFH93026.1| 23S rRNA pseudouridine synthase D [Providencia stuartii MRSN 2154]
Length = 325
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 149/241 (61%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LD++YED +I+++NK GLVVHP GN GT+ + LL YP +++VPRAGI
Sbjct: 75 NRWEPQDIPLDVVYEDEDILVINKPRGLVVHPGAGNPDGTILNALLHRYPEIVDVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G GM+ I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAVGRMTAGGMVEEPISRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V + KPA+T+Y + + H L R L+TGRTHQIRVHM + H ++
Sbjct: 195 KRTHMAV--HPMGKPAITHYRVMEH---FRAHTRL-RLRLETGRTHQIRVHMAHINHPLI 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ F+RQALHA L L HP + ++++W LPDD+ +L
Sbjct: 249 GDPLYGGRPRPLKGASEEFFEVMRKFDRQALHATMLRLYHPISGIQMEWHAPLPDDMVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|350564135|ref|ZP_08932954.1| pseudouridine synthase, RluA family [Thioalkalimicrobium aerophilum
AL3]
gi|349778135|gb|EGZ32494.1| pseudouridine synthase, RluA family [Thioalkalimicrobium aerophilum
AL3]
Length = 357
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 162/258 (62%), Gaps = 21/258 (8%)
Query: 5 GYELIIIKPKKNFFLNKTEK--KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
G EL+ + P + ++T++ + ++LDI+YED I+++NK+AGLVVHP GN GTL +
Sbjct: 67 GGELVSVMPLEE---DETQQVAQSMELDIVYEDAAILVINKTAGLVVHPGAGNPDGTLLN 123
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L VPRAGIVHRLDK+++GLMVVAK++++ HLV+QL+ H V+R Y A+V G
Sbjct: 124 GLLAYAPALRQVPRAGIVHRLDKDTTGLMVVAKTLQAQHHLVDQLQRHDVERVYDAIVVG 183
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G +N I R+ +R KM V + K A+++Y R+A H ++ +L+TG
Sbjct: 184 NMISGGTVNKPIGRHVTDRKKMAV-RVAGGKAAVSHY-RVAEKFRAHTH---VKVSLETG 238
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKY--SKSLI---------FNRQALHAYKLGLIHPKN 231
RTHQIRVHM LG ++GD LYG K K ++ F RQALHA L L HP +
Sbjct: 239 RTHQIRVHMSHLGFPLLGDPLYGSKLRIPKQMMPEFIEILKGFKRQALHAGVLSLTHPVS 298
Query: 232 NLKLKWRINLPDDISKLI 249
+KW+ +PDD+ LI
Sbjct: 299 GKTMKWKAAMPDDMGLLI 316
>gi|117921609|ref|YP_870801.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
ANA-3]
gi|117613941|gb|ABK49395.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
ANA-3]
Length = 323
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 160/262 (61%), Gaps = 30/262 (11%)
Query: 8 LIIIKPKKNFF------LNKT-EKKV------IKLDIIYEDNEIIILNKSAGLVVHPAIG 54
+I+ KP++ F +N T E++V I+LDI+YED++I+++NK AGLVVHP G
Sbjct: 50 VIVNKPREKVFELQRIEINATLEEEVHAAAQAIELDIVYEDDDILVINKQAGLVVHPGAG 109
Query: 55 NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114
N GTL + LL P + +VPRAGIVHRLDK+++GLMVVAK++++ HLV L+ + R
Sbjct: 110 NADGTLMNALLHHCPNIEHVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITR 169
Query: 115 KYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISL 174
+Y A+V G G ++ I R+P R M V + + KPA+T+Y R+A N +
Sbjct: 170 EYEAIVLGTMTAGGTVDEPIGRHPTKRTHMAV--HHSGKPAVTHY-RVAEKFRNH---TR 223
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYK 223
+R L++GRTHQIRVHM ++GH +VGD +YG K S F RQALHA +
Sbjct: 224 LRLRLESGRTHQIRVHMAYIGHVLVGDPVYGGRPKPPKAASPEFFEILKNFKRQALHAVR 283
Query: 224 LGLIHPKNNLKLKWRINLPDDI 245
L L HP + W +P+D+
Sbjct: 284 LELAHPVTCEIMSWTAPIPEDM 305
>gi|167625160|ref|YP_001675454.1| RluA family pseudouridine synthase [Shewanella halifaxensis
HAW-EB4]
gi|167355182|gb|ABZ77795.1| pseudouridine synthase, RluA family [Shewanella halifaxensis
HAW-EB4]
Length = 324
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 146/240 (60%), Gaps = 17/240 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
K + + I LDIIYED+ I+I+NK AGLVVHP GN GTL + LL P + VPRAGI
Sbjct: 75 TKAQAEAIDLDIIYEDDHILIINKQAGLVVHPGAGNQDGTLMNALLHHCPGIELVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++++ HLV L+ + R+Y A+V G G I+ I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVTGTIISGGTIDEPIDRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V N KPA+T+Y R+A + H L R L++GRTHQIRVHM +GH +V
Sbjct: 195 KRTHMAVV--HNGKPAMTHY-RVAEKF--RAHTRL-RLRLESGRTHQIRVHMAHIGHVLV 248
Query: 200 GDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD +Y + + + F RQALHA +L L HP + W+ +PDD+ KL
Sbjct: 249 GDPVYAGRPRPPKGAAPDFFETYMGFRRQALHAVRLELAHPFTCEIMSWQAPIPDDMVKL 308
>gi|431925901|ref|YP_007238935.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
stutzeri RCH2]
gi|431824188|gb|AGA85305.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
stutzeri RCH2]
Length = 375
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED++I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 136 IPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPGLINVPRAGIVHRLDKD 195
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G I+A I R+ R +M V
Sbjct: 196 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTIDAPIGRHGQQRQRMAV 255
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 256 VE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMPHLGYPLVGDPLYAG 309
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 310 RFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKWESPLPDDFVWLLTL 365
>gi|336451272|ref|ZP_08621712.1| pseudouridine synthase, RluA family [Idiomarina sp. A28L]
gi|336281889|gb|EGN75152.1| pseudouridine synthase, RluA family [Idiomarina sp. A28L]
Length = 328
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 159/259 (61%), Gaps = 19/259 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I+G E+++ + + E I L+++YED++++I+NK AGLVVHP G GTL
Sbjct: 65 VIAGQEVVLEATLEPEVFSAPE--AIDLNVVYEDDDLLIINKPAGLVVHPGAGTPDGTLL 122
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL L +PRAGIVHRLDK ++GLMVVAK++ +Y LV L+ + R+Y A+
Sbjct: 123 NALLHHCSSLEQLPRAGIVHRLDKETTGLMVVAKTLPTYTALVAALQAREITREYEAICT 182
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G+ G + AAI R+P R M V++ + KPA+T+Y R+A + H L R L++
Sbjct: 183 GVMTAGGSVEAAIGRHPTKRTLMAVTR--SGKPAVTHY-RVAERF--RAHTRL-RLRLES 236
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM L + +VGD YG ++ S++ I F RQALHA +L L+HP+
Sbjct: 237 GRTHQIRVHMAHLTYPLVGDPQYGGRPRPPRQASEAFITLLRGFTRQALHAIRLALVHPR 296
Query: 231 NNLKLKWRINLPDDISKLI 249
++W + LP+D+ L+
Sbjct: 297 TGEMMEWEVPLPEDMQNLL 315
>gi|452746803|ref|ZP_21946613.1| pseudouridine synthase [Pseudomonas stutzeri NF13]
gi|452009280|gb|EME01503.1| pseudouridine synthase [Pseudomonas stutzeri NF13]
Length = 324
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED++I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 205 VE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMTHLGYPLVGDPLYSG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP +LKW LPDD L+T
Sbjct: 259 RFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGERLKWESPLPDDFVWLLTL 314
>gi|300113280|ref|YP_003759855.1| RluA family pseudouridine synthase [Nitrosococcus watsonii C-113]
gi|299539217|gb|ADJ27534.1| pseudouridine synthase, RluA family [Nitrosococcus watsonii C-113]
Length = 319
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 19/237 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L+IIYED II++NK AGLVVHPA GN GTL + LL P L +PRAGIVHRLDK+
Sbjct: 81 LPLEIIYEDEAIIVVNKPAGLVVHPAAGNRDGTLVNALLHHAPELERIPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVA+++ ++ L+ QL+ + R+Y A+ G+ G I A I R+P NR +M V
Sbjct: 141 TSGLLVVARNLVAHHGLIQQLQARRITREYQAITVGVMTSGGRIEAPIQRHPVNRKRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
KPALT+Y ++++ I + I C L+TGRTHQIRVH+ +G+ ++GD YG
Sbjct: 201 IS--TGKPALTHYR-----VVSRFRIHTHILCRLETGRTHQIRVHLAHIGYPLLGDPTYG 253
Query: 206 KK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
K+ S+ L F RQALHA +LGL+HP+ + W LP+D++ ++
Sbjct: 254 KRLHIPRESSEELSTALRHFKRQALHAARLGLVHPEKKQAMNWEAPLPEDMATMLAL 310
>gi|352080091|ref|ZP_08951160.1| pseudouridine synthase, RluA family [Rhodanobacter sp. 2APBS1]
gi|351684800|gb|EHA67869.1| pseudouridine synthase, RluA family [Rhodanobacter sp. 2APBS1]
Length = 324
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 145/237 (61%), Gaps = 21/237 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L I++ED +++L+K AGLVVHP GN +GTL + LL P L +PRAGIVHRLDK+
Sbjct: 80 IALTIVHEDAHLLVLDKPAGLVVHPGAGNPAGTLLNALLHHDPQLAELPRAGIVHRLDKD 139
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ +Y LV+ L H V+R+Y A+V G G ++A I R+ +R++ V
Sbjct: 140 TSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTLVAGGTVDAPIGRSMGDRLRQAV 199
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ K A+T+Y ER + H SL++C L+TGRTHQIRVH+ +GH +VGD L
Sbjct: 200 RDEEDGKRAVTHYRLRERF------RAH-SLLQCQLETGRTHQIRVHLAHIGHPLVGDPL 252
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S L F RQALHA KL IHP + L + P D+ LI
Sbjct: 253 YGGGLKLPKGASAELAATLRGFRRQALHAEKLSFIHPASGEALSFGAQRPADLQALI 309
>gi|71276441|ref|ZP_00652717.1| Pseudouridine synthase, RluD [Xylella fastidiosa Dixon]
gi|170730991|ref|YP_001776424.1| pseudouridylate synthase [Xylella fastidiosa M12]
gi|71162757|gb|EAO12483.1| Pseudouridine synthase, RluD [Xylella fastidiosa Dixon]
gi|71728678|gb|EAO30826.1| Pseudouridine synthase, RluD [Xylella fastidiosa subsp. sandyi
Ann-1]
gi|167965784|gb|ACA12794.1| Pseudouridylate synthase [Xylella fastidiosa M12]
Length = 331
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + +LNK AGL+VHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLDILYEDEHVFVLNKPAGLIVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 208 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 259 YGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVGALPVRIVAPVPEDLCQLLA 316
>gi|77166008|ref|YP_344533.1| pseudouridine synthase RluD [Nitrosococcus oceani ATCC 19707]
gi|254436382|ref|ZP_05049888.1| pseudouridine synthase, RluA family [Nitrosococcus oceani AFC27]
gi|76884322|gb|ABA59003.1| ribosomal large subunit pseudouridine synthase D [Nitrosococcus
oceani ATCC 19707]
gi|207088072|gb|EDZ65345.1| pseudouridine synthase, RluA family [Nitrosococcus oceani AFC27]
Length = 319
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 162/267 (60%), Gaps = 32/267 (11%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVI------KLDIIYEDNEIIILNKSAGLVVHPAIGNL 56
+ G E I++ + + E +VI L+I YED II++NK AGLVVHPA GN
Sbjct: 58 VQGGEWIVV-------MAEAEAEVIWKSQPLPLEIRYEDEAIIVVNKPAGLVVHPAAGNR 110
Query: 57 SGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116
GTL + LL P L +PRAGIVHRLDK++SGL+VVA+++ ++ LV QL+ + R+Y
Sbjct: 111 DGTLVNALLHHAPELERIPRAGIVHRLDKDTSGLLVVARNLVAHHGLVRQLQARQITREY 170
Query: 117 LAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI-SLI 175
A+ G+ G I A I R+P +R +M V KPALT+Y ++N+ + + +
Sbjct: 171 QAITVGVMTGGGRIEAPIQRHPVHRKRMAVIS--TGKPALTHYR-----VLNRFRVHTHV 223
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK----------KYSKSLI-FNRQALHAYKL 224
C L+TGRTHQIRVH+ +G+ ++GD YGK K S +L F RQALHA +L
Sbjct: 224 SCRLETGRTHQIRVHLAHIGYSLLGDPTYGKRLHIPRESSEKLSTALRHFKRQALHAARL 283
Query: 225 GLIHPKNNLKLKWRINLPDDISKLITF 251
GL+HP+ +++W LP+D++ L+
Sbjct: 284 GLVHPEKKREMRWESPLPEDMATLLVL 310
>gi|334143787|ref|YP_004536943.1| pseudouridine synthase Rlu family protein [Thioalkalimicrobium
cyclicum ALM1]
gi|333964698|gb|AEG31464.1| pseudouridine synthase, RluA family [Thioalkalimicrobium cyclicum
ALM1]
Length = 357
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 156/256 (60%), Gaps = 17/256 (6%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G EL+ + P + ++ + + LDI+YED I+++NK A LVVHP GN GTL + L
Sbjct: 67 GGELVCVTPLEEDETHQIAQS-MDLDIVYEDAAILVINKPARLVVHPGAGNPDGTLLNGL 125
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L VPRAGIVHRLDK+++GLMVVAK++++ HLV+QL+ H V+R Y A+V G
Sbjct: 126 LAYAPGLRQVPRAGIVHRLDKDTTGLMVVAKTLQAQHHLVDQLQRHDVERVYDAIVVGNM 185
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G IN I R+ +R KM V + KPA+++Y R+A H ++ +L+TGRT
Sbjct: 186 IAGGTINKPIGRHIQDRKKMAV-RVAGGKPAVSHY-RVAEKFRAHTH---VKVSLETGRT 240
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKY--SKSLI---------FNRQALHAYKLGLIHPKNNL 233
HQIRVHM LG +VGD LYG K K ++ F RQALHA L L HP
Sbjct: 241 HQIRVHMSHLGFPLVGDPLYGSKLRIPKQMMPEFIDILKGFKRQALHAGVLSLTHPVTGK 300
Query: 234 KLKWRINLPDDISKLI 249
+KW+ +PDD+ LI
Sbjct: 301 TMKWKAPIPDDMGLLI 316
>gi|384082015|ref|ZP_09993190.1| RluA family pseudouridine synthase [gamma proteobacterium HIMB30]
Length = 322
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 163/255 (63%), Gaps = 18/255 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I+I + + + + I LD+++ DN++II+NK AGLVVHP GN SGTL + L
Sbjct: 66 GGEQIVIDAELEAQTDWSAED-IPLDLVHVDNDLIIVNKPAGLVVHPGHGNPSGTLVNAL 124
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L +P L +PRAGIVHRLDK++SG++ VA+S+K+ +LV QLK + R+Y A+V+G P
Sbjct: 125 LSRFPELEEIPRAGIVHRLDKDTSGVLAVARSLKAQANLVKQLKDRSMSRQYAALVYGHP 184
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++AA+ R+ R KM V ++ KPA+T+Y RL+ H + + L+TGRT
Sbjct: 185 NREGTVDAAMDRHRLQRTKMAVV--YSGKPAITHY-RLSEAT---AHCAWLDVKLETGRT 238
Query: 185 HQIRVHMQWLGHGIVGDNLY---------GKKYSKSLI--FNRQALHAYKLGLIHPKNNL 233
HQIRVH+ +GH +VGD +Y + +++LI F RQALHA LGLIHP +
Sbjct: 239 HQIRVHLTHIGHPLVGDPVYRQGRPGLGQATQEARALIDAFPRQALHAKTLGLIHPIHGQ 298
Query: 234 KLKWRINLPDDISKL 248
++++ + L D+ +L
Sbjct: 299 QVEFEVPLASDLHEL 313
>gi|406902653|gb|EKD44976.1| hypothetical protein ACD_70C00132G0003 [uncultured bacterium]
Length = 314
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 149/235 (63%), Gaps = 22/235 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED+EII++NK AGLVVHP GN GTL + LL L +PRAGI+HRLDK+
Sbjct: 81 IALNIVYEDSEIIVINKPAGLVVHPGAGNTHGTLMNALLHHDATLHYLPRAGIIHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+V+A+++ +Y L+ Q++ +QR+Y A+V GI G I+A I R+P R KM V
Sbjct: 141 TSGLLVIARTLPAYQALLKQMRRREIQREYRAIVEGIVISGGTIDAPIGRHPTARTKMAV 200
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ +AK A+T+Y ER A +L+ L+TGRTHQIRVH+ + IVGD +
Sbjct: 201 VE--DAKEAITHYRVLERFAAH-------TLLSVQLETGRTHQIRVHLAHKHYPIVGDRI 251
Query: 204 YGKKYSKSLI----------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
Y KK I F+RQALHAY+L LIHP +L+W +P+D+ +L
Sbjct: 252 YTKKQKSMRISMELQKELQAFSRQALHAYRLSLIHPITQQRLEWTAPMPEDMQRL 306
>gi|422022039|ref|ZP_16368548.1| 23S rRNA pseudouridine synthase D [Providencia sneebia DSM 19967]
gi|414097789|gb|EKT59442.1| 23S rRNA pseudouridine synthase D [Providencia sneebia DSM 19967]
Length = 325
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LD++YED +I+++NK GLVVHP GN GT+ + LL YP +++VPRAGI
Sbjct: 75 NRWEPQDIPLDVVYEDEDILVINKPRGLVVHPGAGNPDGTILNALLYRYPEIVDVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G GM+ I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAVGRMTAGGMVEEPISRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H ++
Sbjct: 195 KRTHMAVHP--MGKPAITHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLI 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F+RQALHA L L HP + ++++W LPDD+ +L
Sbjct: 249 GDPLYGGRPRPLKGASEEFLEVMRNFDRQALHATMLRLYHPISGIQMEWHAPLPDDMVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|359439010|ref|ZP_09228990.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20311]
gi|359444690|ref|ZP_09234461.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20439]
gi|358026244|dbj|GAA65239.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20311]
gi|358041526|dbj|GAA70710.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20439]
Length = 325
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 18/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKL+I+YED++I+++NK GLVVHP GN GT+ + LL +P +INVPRAGIVHR
Sbjct: 78 EAQDIKLNIVYEDDDILVINKPMGLVVHPGAGNPDGTVLNALLHHFPEIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I++ HLV L K R+Y A+ G GM+ AI R+P R
Sbjct: 138 LDKDTTGLMVVAKTIQAQTHLVKALQKRENFTREYEALCNGTMTAGGMVEKAIGRHPTQR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 THMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLNHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG K + L F RQALHA KL + HP + W+ +PDD+ ++
Sbjct: 252 QSYGGRPRPPKGATPELFELLRSFKRQALHAVKLSIAHPITGEMMTWQAPIPDDMVQM 309
>gi|392556407|ref|ZP_10303544.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas undina NCIMB
2128]
Length = 325
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 148/238 (62%), Gaps = 18/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKL+I+YED++I+++NK GLVVHP GN GT+ + LL +P +INVPRAGIVHR
Sbjct: 78 EAQDIKLNIVYEDDDILVINKPMGLVVHPGAGNPDGTVLNALLHHFPDIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I++ HLV L K R+Y A+ G GM+ AI R+P R
Sbjct: 138 LDKDTTGLMVVAKTIQAQTHLVKALQKRENFTREYEALCNGTMTAGGMVEKAIGRHPTQR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 THMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLNHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG K + L F RQALHA KL + HP + W+ +PDD+ ++
Sbjct: 252 QSYGGRPRPPKGATPELFELLRSFKRQALHAVKLSIAHPITGEMMTWQAPIPDDMVQM 309
>gi|71731313|gb|EAO33377.1| Pseudouridine synthase, RluD [Xylella fastidiosa subsp. sandyi
Ann-1]
Length = 328
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + ++NK AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 85 IPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 145 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMAV 204
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 205 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 255
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 256 YGGSLKLPKGGTDALVVMLRGFKRQALHAEVLEFLHPVGALPVRIVAPVPEDLCQLLA 313
>gi|89256088|ref|YP_513450.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. holarctica LVS]
gi|115314564|ref|YP_763287.1| pseudouridylate synthase [Francisella tularensis subsp. holarctica
OSU18]
gi|169656565|ref|YP_001428170.2| RNA pseudouridine synthase, RluA family protein [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|254367416|ref|ZP_04983442.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. holarctica 257]
gi|254369095|ref|ZP_04985107.1| hypothetical protein FTAG_00024 [Francisella tularensis subsp.
holarctica FSC022]
gi|290954527|ref|ZP_06559148.1| RNA pseudouridine synthase, RluA family protein [Francisella
tularensis subsp. holarctica URFT1]
gi|422938523|ref|YP_007011670.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. holarctica FSC200]
gi|423050432|ref|YP_007008866.1| RNA pseudouridine synthase, RluA family protein [Francisella
tularensis subsp. holarctica F92]
gi|89143919|emb|CAJ79138.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. holarctica LVS]
gi|115129463|gb|ABI82650.1| pseudouridylate synthase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253232|gb|EBA52326.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. holarctica 257]
gi|157122045|gb|EDO66185.1| hypothetical protein FTAG_00024 [Francisella tularensis subsp.
holarctica FSC022]
gi|164551633|gb|ABU61214.2| RNA pseudouridine synthase, RluA family protein [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|407293674|gb|AFT92580.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. holarctica FSC200]
gi|421951154|gb|AFX70403.1| RNA pseudouridine synthase, RluA family protein [Francisella
tularensis subsp. holarctica F92]
Length = 332
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+TYY T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITYY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K I RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303
>gi|418293834|ref|ZP_12905736.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379065219|gb|EHY77962.1| pseudouridine synthase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 324
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED++I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 205 VE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMTHLGYPLVGDPLYSG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +++ F RQALHA L L HP +LKW LPDD L+T
Sbjct: 259 RFRIPPAANPTMVQTLREFPRQALHARFLELDHPVTGERLKWESPLPDDFVWLLTL 314
>gi|113971328|ref|YP_735121.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
MR-4]
gi|114048565|ref|YP_739115.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
MR-7]
gi|113886012|gb|ABI40064.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
MR-4]
gi|113890007|gb|ABI44058.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
MR-7]
Length = 323
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 146/232 (62%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I+LDI+YED++I+++NK AGLVVHP GN GTL + LL P + +VPRAGIVHRLD
Sbjct: 80 QAIELDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNALLHHCPNIEHVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+P R M
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVLGTMTAGGTVDEPIGRHPTKRTHM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + + KPA+T+Y R+A N + +R L++GRTHQIRVHM ++GH +VGD +Y
Sbjct: 200 AV--HHSGKPAVTHY-RVAEKFRNH---TRLRLRLESGRTHQIRVHMAYIGHVLVGDPVY 253
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G K S F RQALHA +L L HP + W +P+D+
Sbjct: 254 GGRPKPPKAASPEFFEILKNFKRQALHAVRLELAHPVTCEIMSWTAPIPEDM 305
>gi|414562165|ref|YP_007001393.1| 23S rRNA pseudouridine1911/1915/1917 synthase RluD [Shewanella
oneidensis MR-1]
gi|410519916|gb|AFV73582.1| 23S rRNA pseudouridine1911/1915/1917 synthase RluD [Shewanella
oneidensis MR-1]
Length = 323
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 146/232 (62%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I+LDI+YED++I+++NK AGLVVHP GN GTL + LL P + +VPRAGIVHRLD
Sbjct: 80 QAIELDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNALLHHCPNIEHVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+P R M
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVLGTMTAGGTVDEPIGRHPTKRTHM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + + KPA+T+Y R+A N + +R L++GRTHQIRVHM ++GH +VGD +Y
Sbjct: 200 AV--HHSGKPAVTHY-RVAEKFRNH---TRLRLRLESGRTHQIRVHMAYIGHVLVGDPVY 253
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G K S F RQALHA +L L HP + W +P+D+
Sbjct: 254 GGRPKPPKAASPEFFEILKNFKRQALHAVRLELAHPVTCEIMSWTAPIPEDM 305
>gi|392419719|ref|YP_006456323.1| pseudouridine synthase [Pseudomonas stutzeri CCUG 29243]
gi|390981907|gb|AFM31900.1| pseudouridine synthase [Pseudomonas stutzeri CCUG 29243]
Length = 324
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED++I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLEIVYEDDQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 205 VE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMTHLGYPLVGDPLYSG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 259 RFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGQRMKWESPLPDDFVWLLTL 314
>gi|378822891|ref|ZP_09845615.1| ribosomal large subunit pseudouridine synthase D [Sutterella
parvirubra YIT 11816]
gi|378598295|gb|EHY31459.1| ribosomal large subunit pseudouridine synthase D [Sutterella
parvirubra YIT 11816]
Length = 356
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 144/237 (60%), Gaps = 10/237 (4%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + + D++YED+ II+++K AGLVVHP GN GTL + LL YP L VPRAGIVHR
Sbjct: 101 EPQEVDFDVMYEDDTIIVVSKPAGLVVHPGAGNPCGTLLNGLLHRYPELREVPRAGIVHR 160
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD++++GLMVVA+++ + +LV QL+ V+R+Y A+ G + ++ I R+P +RI
Sbjct: 161 LDRDTTGLMVVARTLAAQTNLVRQLQERTVKREYWALTIGTSAADFVVEVPIGRDPRSRI 220
Query: 143 K---MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+ S AKPA T + + +S + C L TGRTHQIRVH+ ++
Sbjct: 221 RFKGFPGSTGVRAKPARTRVKTVGWSEFEGVPVSWVACRLDTGRTHQIRVHLTGEDLPLI 280
Query: 200 GDNLY-------GKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +Y G K L F+RQALHA +LGL+HP +++W + P+D+ +L+
Sbjct: 281 GDQIYRGRAPGIGVKLENMLDFHRQALHASRLGLVHPATGEQMEWFVPPPEDMIELM 337
>gi|319942386|ref|ZP_08016700.1| pseudouridine synthase [Sutterella wadsworthensis 3_1_45B]
gi|319804074|gb|EFW00982.1| pseudouridine synthase [Sutterella wadsworthensis 3_1_45B]
Length = 363
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 155/257 (60%), Gaps = 11/257 (4%)
Query: 4 SGYELIIIKPKK-NFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
G E+ +++P K + L + ++ ++IYED II++NK AGLVVHP GN GTL +
Sbjct: 89 EGDEIELLEPPKLDEALAFEPQSFVEFEVIYEDPSIIVVNKPAGLVVHPGAGNPDGTLLN 148
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL +P L +VPRAGIVHRLD++++GLMVVA+++ + +LV QL+ V+R+Y A+ G
Sbjct: 149 GLLYHFPELKDVPRAGIVHRLDRDTTGLMVVARTLAAQTNLVRQLQERTVKREYWALTMG 208
Query: 123 IPKLNGMINAAIMRNPHNRIK---MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
+ +++ I R+P +RI+ S AKPA T + ++ S + C L
Sbjct: 209 TAAEDFVVDVPIGRDPKSRIRFKGFPGSTGVRAKPARTRARAVGWSSVDGIPASWVACRL 268
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLY-GK------KYSKSLIFNRQALHAYKLGLIHPKNN 232
TGRTHQIRVH+ ++GD LY G+ K L F+RQALHA +LGLIHP
Sbjct: 269 DTGRTHQIRVHLTGEDLPLIGDQLYRGRAPGIAVKVENFLEFHRQALHASRLGLIHPATG 328
Query: 233 LKLKWRINLPDDISKLI 249
+++W + P+D+ L+
Sbjct: 329 EEMEWFVEPPEDMIDLM 345
>gi|397662014|ref|YP_006502714.1| ribosomal large subunit pseudouridine synthase D [Taylorella
equigenitalis ATCC 35865]
gi|394350193|gb|AFN36107.1| ribosomal large subunit pseudouridine synthase D [Taylorella
equigenitalis ATCC 35865]
gi|399115986|emb|CCG18791.1| ribosomal large subunit pseudouridine synthase D [Taylorella
equigenitalis 14/56]
Length = 323
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 147/232 (63%), Gaps = 4/232 (1%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I D+I E + I++ K AGLV HP GN SGTL + LL +P L +VPRAGIVHRLDK+
Sbjct: 87 INFDVIDESTDWIVIGKPAGLVTHPGSGNWSGTLLNGLLYRFPELKHVPRAGIVHRLDKD 146
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG++VVA++ S + + QL+ + RKY+A+V G G+I I R+P N IKM
Sbjct: 147 TSGVLVVARNEMSQFNFIKQLQARTMGRKYIAIVSGTTSDQGVIADEIGRDPRNPIKMAS 206
Query: 147 S---KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K + K A+T+YE + G I K+ISLI C L+TGRTHQIRVHM + H +VGD L
Sbjct: 207 SKIVKPISPKEAITHYETIRHGYIEDKNISLINCRLETGRTHQIRVHMASINHPLVGDEL 266
Query: 204 YGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIK 255
YG K+ RQ LHAY+L P + +L +R ++ +D+ K++ +G +
Sbjct: 267 YGGIKLKTFKNLRQMLHAYELQFNDPVSGERLCFRCDVAEDM-KMVAGAGFE 317
>gi|170728051|ref|YP_001762077.1| RluA family pseudouridine synthase [Shewanella woodyi ATCC 51908]
gi|169813398|gb|ACA87982.1| pseudouridine synthase, RluA family [Shewanella woodyi ATCC 51908]
Length = 323
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 153/258 (59%), Gaps = 19/258 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G E+ I K K + I LDI+YED+ II++NK AGLVVHP GN GTL
Sbjct: 59 VLEGQEIAIEATLKEETAAKAQ--AIDLDIVYEDDHIIVINKQAGLVVHPGAGNQDGTLM 116
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P + VPRAGIVHRLDK+++GLMVVAK++++ HLV+ L+ + R+Y A+V
Sbjct: 117 NALLHHCPGIELVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVSALQAREITREYEAVVL 176
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G ++ I R+P R M V N KPA+T+Y R+A + H L R L++
Sbjct: 177 GTLISGGTVDEPIDRHPTKRTHMAVV--HNGKPAMTHY-RVAEKF--RAHTRL-RLRLES 230
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPK 230
GRTHQIRVHM +GH +VGD +YG + + + F RQALHA +L L HP
Sbjct: 231 GRTHQIRVHMSHIGHTLVGDPVYGGRPRPPKGVTPEFFETYMGFKRQALHAIRLELAHPY 290
Query: 231 NNLKLKWRINLPDDISKL 248
+ W+ +P+D+ L
Sbjct: 291 TFEIMSWQAPVPEDMVTL 308
>gi|389796257|ref|ZP_10199313.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter sp.
116-2]
gi|388448897|gb|EIM04877.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter sp.
116-2]
Length = 324
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 143/237 (60%), Gaps = 21/237 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L I++ED +++L+K AGLVVHP GN +GTL + LL P L +PRAGIVHRLDK+
Sbjct: 80 IALTIVHEDAHLLVLDKPAGLVVHPGAGNPAGTLLNALLHHDPQLAELPRAGIVHRLDKD 139
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ +Y LV+ L H V+R+Y A+V G G ++A I R+ +R++ V
Sbjct: 140 TSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTLVAGGTVDAPIGRSMGDRLRQAV 199
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ K A+T+Y ER SL++C L+TGRTHQIRVH+ +GH ++GD L
Sbjct: 200 RDEEDGKRAVTHYRLRERFCA-------HSLLQCQLETGRTHQIRVHLAHIGHPLIGDPL 252
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S L F RQALHA KL IHP + L + P D+ LI
Sbjct: 253 YGGGLKLPKGASAELAATLRGFRRQALHAEKLSFIHPASGEALSFGAQRPADLQALI 309
>gi|443468566|ref|ZP_21058773.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
pseudoalcaligenes KF707]
gi|442897785|gb|ELS24602.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
pseudoalcaligenes KF707]
Length = 323
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ +++L+K AGLVVHPA G+ GTL + LL P L NVPRAGIVHRLDK+
Sbjct: 85 IELDIVYEDDHLLVLDKPAGLVVHPAAGHADGTLLNALLHHVPGLANVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLEAHTSLVAQLQARSVSRIYEAVVVGVITAGGKIDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA+T+Y R+ + H R L+TGRTHQIRVHM ++ +VGD +Y
Sbjct: 205 VA--GGKPAVTHY-RVLERFRSHTH---TRVKLETGRTHQIRVHMAYVNFPLVGDPVYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 259 RFRIPPAASQTLVQTLKDFPRQALHARFLELDHPATGERMKWESPLPDDFVWLLTL 314
>gi|392541240|ref|ZP_10288377.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas piscicida JCM
20779]
gi|409202082|ref|ZP_11230285.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas flavipulchra
JG1]
Length = 325
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 149/239 (62%), Gaps = 18/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I+LDI+YED++I+++NK GLVVHP GN GT+ + LL +P +INVPRAGIVHR
Sbjct: 78 EAQDIELDIVYEDDDILVINKPMGLVVHPGAGNPDGTVLNALLHHHPEIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I++ HLV L+ R+Y A+ G GMI I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIQAQTHLVKNLQARENFTREYEAVCNGTMTAGGMIEKPIGRHATKR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 THMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLNHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG + ++ L F RQALHA KL + HP K+ W +P+D+ KL+
Sbjct: 252 QLYGGRPRPPRNATQGLTEQLREFKRQALHAIKLSIAHPITGEKMTWEAPVPEDMIKLV 310
>gi|380513652|ref|ZP_09857059.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
sacchari NCPPB 4393]
Length = 335
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 147/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+++I+LNK AGLVVHP GN SGTL + LL P L +PRAGIVHRLDK+
Sbjct: 92 IPLEVLYEDDQVIVLNKPAGLVVHPGAGNPSGTLVNALLYRDPGLSALPRAGIVHRLDKD 151
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG MVVA++++++ LV QL V R+YLA+V G G NA I R+P +R++M V
Sbjct: 152 TSGAMVVARTLQAHTSLVAQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLRMAV 211
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + + A+T+Y ER + H +L C L+TGRTHQIRVHM L H IVGD L
Sbjct: 212 RE--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKHPIVGDPL 262
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K S LI F RQALHA L HP + ++ +P D+ +L+
Sbjct: 263 YGGPLKLPKGASDELIAELRGFKRQALHAETLEFKHPLSGEPVRATAAVPADLQQLMA 320
>gi|333986057|ref|YP_004515267.1| RluA family pseudouridine synthase [Methylomonas methanica MC09]
gi|333810098|gb|AEG02768.1| pseudouridine synthase, RluA family [Methylomonas methanica MC09]
Length = 316
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 154/234 (65%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED ++I+NK AGLVVHPA+GN SGTL + LL P L +PRAGIVHR+DK+
Sbjct: 78 IPLDIVYEDESLLIVNKPAGLVVHPAVGNWSGTLVNALLNHAPNLDTLPRAGIVHRIDKD 137
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL++VAK+++++ LV QL+ + R+YLA+V G G ++ I R+P +R + V
Sbjct: 138 TSGLLMVAKTLQAHNSLVEQLQERSIHREYLALVKGWMTAGGTVDEPIGRHPVDRKRNAV 197
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ + K A+T+Y RL K+H +LIR L+TGRTHQIRVHM + + +VGD YG
Sbjct: 198 RR--DGKEAVTHY-RLEQRF--KRH-TLIRVKLETGRTHQIRVHMAHINYPLVGDQTYGG 251
Query: 207 KY----------SKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++ +++L F RQALHA KLGL HP+ ++W +P+D+ LI
Sbjct: 252 RFQMPAECNPALAEALRNFKRQALHATKLGLDHPETGEYMEWEQAMPEDMQNLI 305
>gi|389781116|ref|ZP_10194523.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter
spathiphylli B39]
gi|388435396|gb|EIL92303.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter
spathiphylli B39]
Length = 324
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 145/239 (60%), Gaps = 21/239 (8%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L+I++ED +++L+K AGLVVHP GN GTL + LL P L +PRAGIVHRLD
Sbjct: 78 EAMALEIVHEDEHLLVLDKPAGLVVHPGAGNPVGTLLNGLLHHDPKLAELPRAGIVHRLD 137
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K++SGLMVVA+++ +Y LV+ L H V+R+Y A+V G G ++ I R+ +R++
Sbjct: 138 KDTSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTMVAGGTVDEPIGRSMGDRLRQ 197
Query: 145 TVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
V + K A+T+Y ER + H SL++C L+TGRTHQIRVHM +GH ++GD
Sbjct: 198 AVRDEEDGKRAVTHYRLRERF------RAH-SLLQCQLETGRTHQIRVHMAHIGHPLIGD 250
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG + S LI F RQALHA KL IHP + + P D +LI
Sbjct: 251 PLYGGGLKLPRGASAELIATLRGFRRQALHAEKLSFIHPATGEDMSFSAERPADQRQLI 309
>gi|254876749|ref|ZP_05249459.1| ribosomal large subunit pseudouridine synthase D [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254842770|gb|EET21184.1| ribosomal large subunit pseudouridine synthase D [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 328
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 144/224 (64%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I++EDN+II+++K +VVHP GN++GT+ + LL YP +PRAGIVHRLDK+
Sbjct: 86 IDLNIVFEDNDIIVIDKPIDMVVHPGAGNMTGTISNALLHKYPNQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+ +NR KMT+
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLSERKVSRKYLAIVEGEIYEEGTINQPIGRDINNRTKMTI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N K A+T+Y+ + +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NHKGKEAITHYKPIEV----YDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K NRQALHAYKL IHP + ++++ LP+D+
Sbjct: 260 SSTKLDKVGIENINRQALHAYKLSFIHPTSQKIVRFKSKLPEDM 303
>gi|28199626|ref|NP_779940.1| ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa Temecula1]
gi|34395764|sp|Q87AR7.1|RLUD_XYLFT RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|28057741|gb|AAO29589.1| ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa Temecula1]
Length = 331
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + ++NK AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMEV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 208 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 259 YGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLA 316
>gi|261346208|ref|ZP_05973852.1| ribosomal large subunit pseudouridine synthase D [Providencia
rustigianii DSM 4541]
gi|282565514|gb|EFB71049.1| ribosomal large subunit pseudouridine synthase D [Providencia
rustigianii DSM 4541]
Length = 325
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LD++YED +I+++NK GLVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDVVYEDEDILVINKPRGLVVHPGAGNPDGTILNALLYRYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G GM+ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDALQRREITREYEAVAVGRMTAGGMVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H ++GD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLIGDQ 251
Query: 203 LYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG + + F+RQALHA L L HP + ++++W LPDD+ +LI
Sbjct: 252 LYGGRPRPLKGATEEFFEVMRKFDRQALHATMLRLYHPISGIQMEWHAPLPDDMVELI 309
>gi|389872798|ref|YP_006380217.1| ribosomal large subunit pseudouridine synthase D [Advenella
kashmirensis WT001]
gi|388538047|gb|AFK63235.1| ribosomal large subunit pseudouridine synthase D [Advenella
kashmirensis WT001]
Length = 266
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 8/246 (3%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
+ P++ F + + ++ + + I++NK AGLV HP GN SGTL + LL YP
Sbjct: 26 LAPEQTAFTPEP----VDFMVVADSADWIVVNKPAGLVTHPGAGNWSGTLLNGLLYRYPE 81
Query: 71 LINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMI 130
L +VPRAGIVHRLDK++ GL+VVA++ + H V QL+ + R+Y A+V G +G +
Sbjct: 82 LAHVPRAGIVHRLDKDTDGLLVVARNEAAQTHFVRQLQARTMGREYEALVMGHSPASGSV 141
Query: 131 NAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
I R+ H ++M+ AK A+T+YERLA G I++ +S ++C L+TGRTHQIRVH
Sbjct: 142 TLPIGRDRHVPVRMSTVTPIAAKEAITHYERLAFGYIDEAPVSHVQCRLETGRTHQIRVH 201
Query: 191 MQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
M LGH ++GD LY K RQ LHA +L I P + + PDD+ +++
Sbjct: 202 MHALGHPLLGDTLYNGKLLGPA--QRQMLHARRLTFIDPATDQPRSFDAARPDDMERVM- 258
Query: 251 FSGIKW 256
+ I+W
Sbjct: 259 -AAIEW 263
>gi|182682370|ref|YP_001830530.1| RluA family pseudouridine synthase [Xylella fastidiosa M23]
gi|386083706|ref|YP_005999988.1| ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|417558664|ref|ZP_12209626.1| Pseudouridylate synthase, 23S RNA-specific RluA [Xylella fastidiosa
EB92.1]
gi|182632480|gb|ACB93256.1| pseudouridine synthase, RluA family [Xylella fastidiosa M23]
gi|307578653|gb|ADN62622.1| ribosomal large subunit pseudouridine synthase D [Xylella
fastidiosa subsp. fastidiosa GB514]
gi|338178744|gb|EGO81727.1| Pseudouridylate synthase, 23S RNA-specific RluA [Xylella fastidiosa
EB92.1]
Length = 327
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + ++NK AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 84 IPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 143
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 144 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMEV 203
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 204 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 254
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 255 YGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLA 312
>gi|120599938|ref|YP_964512.1| RluA family pseudouridine synthase [Shewanella sp. W3-18-1]
gi|146292126|ref|YP_001182550.1| RluA family pseudouridine synthase [Shewanella putrefaciens CN-32]
gi|386312797|ref|YP_006008962.1| RluA family pseudouridine synthase [Shewanella putrefaciens 200]
gi|120560031|gb|ABM25958.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
W3-18-1]
gi|145563816|gb|ABP74751.1| ribosomal large subunit pseudouridine synthase D [Shewanella
putrefaciens CN-32]
gi|319425422|gb|ADV53496.1| pseudouridine synthase, RluA family [Shewanella putrefaciens 200]
Length = 324
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 159/262 (60%), Gaps = 30/262 (11%)
Query: 8 LIIIKPKKNFF-LNKTE------------KKVIKLDIIYEDNEIIILNKSAGLVVHPAIG 54
+I+ KP++ F L + E + I+L+I+YED+ I+++NK AGLVVHP G
Sbjct: 50 VIVNKPREKVFELQQIEIAATLEEEVHAAAQAIELNIVYEDDHILVINKQAGLVVHPGAG 109
Query: 55 NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114
N GTL + LL P + +VPRAGIVHRLDK+++GLMVVAK++++ HLV L+ + R
Sbjct: 110 NADGTLMNALLHHCPDIEHVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITR 169
Query: 115 KYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISL 174
+Y A+V G G ++ I R+P R M V + + KPA+T+Y R+A N +
Sbjct: 170 EYEAIVMGTMTGGGTVDEPIGRHPTKRTHMAV--HHSGKPAVTHY-RVAEKFRNH---TR 223
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYK 223
+R L++GRTHQIRVHM+++GH +VGD +YG K S F RQALHA +
Sbjct: 224 LRLRLESGRTHQIRVHMEYIGHVLVGDPVYGGRPKPPKAASPEFFEILKNFKRQALHAVR 283
Query: 224 LGLIHPKNNLKLKWRINLPDDI 245
L L HP + + W+ +P+D+
Sbjct: 284 LELAHPVSCEIMSWQAPIPEDM 305
>gi|359440611|ref|ZP_09230525.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20429]
gi|392536448|ref|ZP_10283585.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas arctica A
37-1-2]
gi|358037646|dbj|GAA66774.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20429]
Length = 325
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 145/235 (61%), Gaps = 18/235 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKL+I+YED++I+++NK GLVVHP GN +GT+ + LL YP +INVPRAGIVHR
Sbjct: 78 EAQDIKLNIVYEDDDILVINKPMGLVVHPGAGNPNGTVLNALLHYYPEIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I + HLV L K R+Y A+ G GM+ AI R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTHLVTALQKRENFTREYEALCNGTMTAGGMVEKAIGRHPTQR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM L H ++GD
Sbjct: 198 THMAVHE--LGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAHLNHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
YG K + L F RQALHA KL + HP + W+ +PDD+
Sbjct: 252 QSYGGRPRPPKGATPELFELLRSFRRQALHAVKLSIAHPITGEMMTWQAPIPDDM 306
>gi|332535270|ref|ZP_08411072.1| ribosomal large subunit pseudouridine synthase D [Pseudoalteromonas
haloplanktis ANT/505]
gi|359432250|ref|ZP_09222640.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20652]
gi|332035301|gb|EGI71805.1| ribosomal large subunit pseudouridine synthase D [Pseudoalteromonas
haloplanktis ANT/505]
gi|357921102|dbj|GAA58889.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20652]
Length = 325
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 145/235 (61%), Gaps = 18/235 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKL+I+YED++I+++NK GLVVHP GN +GT+ + LL YP +INVPRAGIVHR
Sbjct: 78 EAQDIKLNIVYEDDDILVINKPMGLVVHPGAGNPNGTVLNALLHYYPEIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I + HLV L K R+Y A+ G GM+ AI R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTHLVTALQKRENFTREYEALCNGTMTAGGMVEKAIGRHPTQR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM L H ++GD
Sbjct: 198 THMAVHE--LGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAHLNHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
YG K + L F RQALHA KL + HP + W+ +PDD+
Sbjct: 252 QSYGGRPRPPKGATPELFELLRSFRRQALHAVKLSIAHPITGEMMTWQAPIPDDM 306
>gi|419953971|ref|ZP_14470113.1| pseudouridine synthase [Pseudomonas stutzeri TS44]
gi|387969346|gb|EIK53629.1| pseudouridine synthase [Pseudomonas stutzeri TS44]
Length = 324
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLDIVYEDEHILVIDKPAGLVVHPAAGHADGTLLNALLHHVPELINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVVGVVITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA++++ L + H + +R L+TGRTHQIRVHM +G+ +VGD LY
Sbjct: 205 VE--GGKPAVSHFRVLER---FRAH-THVRVKLETGRTHQIRVHMTHIGYPLVGDPLYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 259 RFRIPPAANPTLVQTLREFPRQALHARFLELEHPATGERMKWESPLPDDFVWLLTL 314
>gi|404402808|ref|ZP_10994392.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fuscovaginae UPB0736]
Length = 320
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRTVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP + ++ W LPDD L++
Sbjct: 255 RFRIPPAASVTMVESLKNFPRQALHARFLELDHPTSGERMSWESPLPDDFVWLLSL 310
>gi|417359229|ref|YP_002934587.2| pseudouridine synthase, RluA family [Edwardsiella ictaluri 93-146]
gi|409033396|gb|ACR70352.2| pseudouridine synthase, RluA family [Edwardsiella ictaluri 93-146]
Length = 326
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 17/242 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGI
Sbjct: 75 NRWEAQDIALDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPQIADVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGTMTAGGTVREPIARHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +V
Sbjct: 195 KRTHMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHINHPLV 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + S I F+RQALHA L L HP + ++++W +PDD+ +L
Sbjct: 249 GDPLYGGRPRPPRDASPEFIRVLREFDRQALHATMLRLYHPISGIEMEWHAPIPDDMQRL 308
Query: 249 IT 250
I
Sbjct: 309 IA 310
>gi|345870267|ref|ZP_08822221.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
gi|343922209|gb|EGV32914.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
Length = 321
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 143/236 (60%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LD++YED++I++++K AGLVVHPA GN GTL + LL P L VPRAGIVHRLDK+
Sbjct: 85 IALDLVYEDDDILVIDKPAGLVVHPAAGNPDGTLLNALLHHAPALAGVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVAK++ ++ LV QL+ V R+Y A+V G G + A + R+P +R KM V
Sbjct: 145 TSGLLVVAKTLTAHKSLVEQLQQRTVHREYRALVVGELVAGGRVEAPVGRHPVHRTKMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N A A+T+Y+ L SL+ L+TGRTHQIRVHM + H +VGD YG
Sbjct: 205 VGNGRA--AVTHYQVLE----RYSGHSLLGVELETGRTHQIRVHMTHIHHPLVGDRTYGV 258
Query: 207 K-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
+ S F RQALHA +LGL+HP ++W + + D+ L+
Sbjct: 259 RPRPPQGCDPALTSALQSFPRQALHALRLGLVHPATGEPMEWEVPMAADLDALLEL 314
>gi|398980979|ref|ZP_10689211.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM25]
gi|398134010|gb|EJM23186.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM25]
Length = 320
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP ++ W LP+D+ L+T
Sbjct: 255 RFRIPPAASQTMVESLKHFPRQALHARFLELDHPTTGERMSWESPLPEDLVWLLTL 310
>gi|77461057|ref|YP_350564.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens Pf0-1]
gi|77385060|gb|ABA76573.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens Pf0-1]
Length = 320
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP ++ W LP+D+ L+T
Sbjct: 255 RFRIPPAASQTMVESLKHFPRQALHARFLELDHPTTGERMSWESPLPEDLVWLLTL 310
>gi|134301739|ref|YP_001121707.1| RluA family pseudouridine synthase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134049516|gb|ABO46587.1| pseudouridine synthase, RluA family protein [Francisella tularensis
subsp. tularensis WY96-3418]
Length = 317
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 71 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNTLLHRYKDQDKLPRAGIVHRLDKD 130
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 131 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYKQGTINQPIGRDPTNRTKMAI 190
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 191 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 244
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K I RQALHAYKL IHP +K++ LP+D+
Sbjct: 245 SSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 288
>gi|409397136|ref|ZP_11248074.1| pseudouridine synthase [Pseudomonas sp. Chol1]
gi|409118296|gb|EKM94696.1| pseudouridine synthase [Pseudomonas sp. Chol1]
Length = 324
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED I++++K AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLDIVYEDEHILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVVGVVITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA++++ L + H + +R L+TGRTHQIRVHM +G+ +VGD LY
Sbjct: 205 VE--GGKPAVSHFRVLER---FRAH-THVRVKLETGRTHQIRVHMTHIGYPLVGDPLYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP ++KW LPDD L+T
Sbjct: 259 RFRIPPAANPTLVQTLREFPRQALHARFLELDHPATGERMKWESPLPDDFVWLLTL 314
>gi|90408473|ref|ZP_01216632.1| Ribosomal large subunit pseudouridine synthase D [Psychromonas sp.
CNPT3]
gi|90310405|gb|EAS38531.1| Ribosomal large subunit pseudouridine synthase D [Psychromonas sp.
CNPT3]
Length = 322
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 144/233 (61%), Gaps = 16/233 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDII+ED I+++NK AGLVVHP GN GT+ + LL YP ++ VPRAGIVHRLDK+
Sbjct: 82 IPLDIIFEDEHILVINKPAGLVVHPGAGNPDGTVLNALLHHYPEIVEVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMV+AK++ + HLV L+ + R+Y A+ G G + A I R+ NR+KM V
Sbjct: 142 TTGLMVIAKTVPAQTHLVTSLQAREITREYDAIAMGCFTAGGRVEAPIGRDKANRVKMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ K A+T+Y R+A + H L R L+TGRTHQIRVHM +GH + GD +YG
Sbjct: 202 A-TVGGKHAVTHY-RVAEKY--RAHTRL-RLRLETGRTHQIRVHMSHIGHVLAGDPVYGG 256
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
K S+SL F RQALHA L L HP ++W +PDD+ +L
Sbjct: 257 RPRPPKGASESLTTTLRAFKRQALHAIMLRLEHPITGEIMEWHAPVPDDMKEL 309
>gi|387886199|ref|YP_006316498.1| lysozyme [Francisella noatunensis subsp. orientalis str. Toba 04]
gi|386871015|gb|AFJ43022.1| lysozyme [Francisella noatunensis subsp. orientalis str. Toba 04]
Length = 328
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 144/224 (64%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L++I+ED++II+++K +VVHP GN++GT+ + LL YP +PRAGIVHRLDK+
Sbjct: 86 IDLNVIFEDDDIIVIDKPIDMVVHPGAGNMTGTISNALLHKYPNQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+ +NR KM +
Sbjct: 146 TSGLMVAAKSSIAYYNLVQQLSERKVSRKYLAIVEGEIYEEGTINQPIGRDLNNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y+ + +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYKGKEAITHYKPIEV----YDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K NRQALHAYKL IHP + ++++ LP+D+
Sbjct: 260 SSTKLDKIGIENINRQALHAYKLSFIHPTSQKIVRFKSKLPEDM 303
>gi|325921580|ref|ZP_08183425.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
gardneri ATCC 19865]
gi|325547934|gb|EGD18943.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
gardneri ATCC 19865]
Length = 331
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 148/243 (60%), Gaps = 23/243 (9%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
+E + I L ++YED+++++++K AGLVVHP GN GTL + LL P L VPRAG+VH
Sbjct: 83 SEPQDIPLSVLYEDDQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALAAVPRAGVVH 142
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLDK++SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R
Sbjct: 143 RLDKDTSGVMVVARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDR 202
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
+KM V + + A+T+Y ER + H +L C L+TGRTHQIRVHM L I
Sbjct: 203 LKMAVRD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPI 253
Query: 199 VGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
VGD LYG K S L+ F RQALHA L +HP + ++ +P D+ +
Sbjct: 254 VGDPLYGGALKLPKGASDELVHELRTFKRQALHAETLEFLHPVSGEPVRASAPVPVDLQR 313
Query: 248 LIT 250
L+T
Sbjct: 314 LMT 316
>gi|62260278|gb|AAX77894.1| unknown protein [synthetic construct]
Length = 367
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 112 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 171
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 172 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYKQGTINQPIGRDPTNRTKMAI 231
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 232 --NYRGKEAITHY----TSIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 285
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K I RQALHAYKL IHP +K++ LP+D+
Sbjct: 286 SSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 329
>gi|294634724|ref|ZP_06713255.1| ribosomal large subunit pseudouridine synthase D [Edwardsiella
tarda ATCC 23685]
gi|451966848|ref|ZP_21920098.1| 23S rRNA pseudouridine synthase RluD [Edwardsiella tarda NBRC
105688]
gi|291091854|gb|EFE24415.1| ribosomal large subunit pseudouridine synthase D [Edwardsiella
tarda ATCC 23685]
gi|451314385|dbj|GAC65460.1| 23S rRNA pseudouridine synthase RluD [Edwardsiella tarda NBRC
105688]
Length = 326
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 148/242 (61%), Gaps = 17/242 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGI
Sbjct: 75 NRWEAQDIALDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPQIADVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGTMTAGGTVREPIARHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M+V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +V
Sbjct: 195 KRTHMSV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLV 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + S I F+RQALHA L L HP + ++++W +P+D+ +L
Sbjct: 249 GDQLYGGRPRPPRDASPEFIQTLRAFDRQALHATMLRLYHPISGIEMEWHAPIPEDMQRL 308
Query: 249 IT 250
I
Sbjct: 309 IA 310
>gi|56708307|ref|YP_170203.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110670778|ref|YP_667335.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis FSC198]
gi|254370790|ref|ZP_04986795.1| hypothetical protein FTBG_00600 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875128|ref|ZP_05247838.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis MA00-2987]
gi|379717541|ref|YP_005305877.1| ribosomal large subunit pseudouridine synthase D( ) [Francisella
tularensis subsp. tularensis TIGB03]
gi|379726145|ref|YP_005318331.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis TI0902]
gi|385795003|ref|YP_005831409.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis NE061598]
gi|421755891|ref|ZP_16192827.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 80700075]
gi|54113047|gb|AAV29157.1| NT02FT0135 [synthetic construct]
gi|56604799|emb|CAG45878.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110321111|emb|CAL09261.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis FSC198]
gi|151569033|gb|EDN34687.1| hypothetical protein FTBG_00600 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841127|gb|EET19563.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282159538|gb|ADA78929.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis NE061598]
gi|377827594|gb|AFB80842.1| ribosomal large subunit pseudouridine synthase D( ) [Francisella
tularensis subsp. tularensis TI0902]
gi|377829218|gb|AFB79297.1| ribosomal large subunit pseudouridine synthase D( ) [Francisella
tularensis subsp. tularensis TIGB03]
gi|409087174|gb|EKM87280.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 80700075]
Length = 332
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYKQGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITHY----TSIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K I RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303
>gi|146306004|ref|YP_001186469.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mendocina ymp]
gi|145574205|gb|ABP83737.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mendocina ymp]
Length = 324
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED +++++K AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 85 IELNIVYEDEHLLVIDKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ +LV QL+ V R Y + G+ G I+A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTNLVEQLQKRSVSRIYECICIGVITAGGTIDAPIGRSSSQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y L + H + +R L+TGRTHQIRVHM +G+ +VGD +Y
Sbjct: 205 TD--GGKPAISHYRVLER---YRSH-THVRVKLETGRTHQIRVHMSHVGYPLVGDPVYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S+SL+ F RQALHA L L HP ++KW LPDD+ L+T
Sbjct: 259 RFRIPPAASQSLVQSLKEFPRQALHARFLELDHPATGKRMKWESPLPDDLVWLLTL 314
>gi|167719292|ref|ZP_02402528.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei DM98]
Length = 318
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 124/186 (66%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLDK
Sbjct: 126 VPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLDKE 185
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M V
Sbjct: 186 TSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRMAV 245
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +YG+
Sbjct: 246 VTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVYGR 305
Query: 207 KYSKSL 212
++L
Sbjct: 306 ARRQAL 311
>gi|254491724|ref|ZP_05104903.1| pseudouridine synthase, RluA family [Methylophaga thiooxidans
DMS010]
gi|224463202|gb|EEF79472.1| pseudouridine synthase, RluA family [Methylophaga thiooxydans
DMS010]
Length = 320
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 156/256 (60%), Gaps = 17/256 (6%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E +II + + I LDI++ED+++II+NK AG+VVHP GN GTL + L
Sbjct: 60 GGENVIIDTELQSQDESWSAEPIALDIVHEDDDVIIINKPAGMVVHPGAGNHQGTLVNAL 119
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P L N+PRAGIVHRLDK ++GL++VAK+++++ LV+QL+ VQR+Y A+ G+
Sbjct: 120 LAHAPQLANIPRAGIVHRLDKATTGLLMVAKTLQAHNSLVSQLQARTVQREYQAIAIGVM 179
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+ +R +M +S+ KPA+T+Y R+ H IRC L+TGRT
Sbjct: 180 TAGGTVDEPIGRHHIDRKRMAISQ--TGKPAITHY-RVEQRFRAHTH---IRCKLETGRT 233
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKY--SKSLI---------FNRQALHAYKLGLIHPKNNL 233
HQIRVHM + H ++GD +Y ++ +K + F RQALHA LG HP +
Sbjct: 234 HQIRVHMAHIRHPLLGDQVYAGRFKMAKGMSENCREAVQGFRRQALHAGLLGFKHPASGE 293
Query: 234 KLKWRINLPDDISKLI 249
+ W+ LP+D+ ++
Sbjct: 294 DVSWQAPLPEDMQTIL 309
>gi|288940534|ref|YP_003442774.1| RluA family pseudouridine synthase [Allochromatium vinosum DSM 180]
gi|288895906|gb|ADC61742.1| pseudouridine synthase, RluA family [Allochromatium vinosum DSM
180]
Length = 326
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 149/245 (60%), Gaps = 17/245 (6%)
Query: 18 FLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA 77
+++ + I LD++YED +++++K AGLVVHPA GN GTL + LL P L +PRA
Sbjct: 76 VVDEHRPQAIALDLVYEDEHLLVIDKPAGLVVHPAAGNPDGTLLNALLHHAPELATLPRA 135
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRN 137
GIVHRLDK+++GLMVVA++++++ LV QL+ IV R+Y A+V G G + A I R+
Sbjct: 136 GIVHRLDKDTTGLMVVARTLQAHCALVEQLQRRIVHREYRALVLGTLVAGGRVEAPIGRH 195
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
P R+KM V N + A+T+Y L + H +L+ L+TGRTHQIRVHM + H
Sbjct: 196 PTQRVKMAVVG--NGREAITHYRVLES---YPGH-TLLAVELETGRTHQIRVHMTHIHHP 249
Query: 198 IVGDNLY----------GKKYSKSL-IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
+VGD Y + + +L F RQALHA +LGLIHP ++ W + + D+
Sbjct: 250 LVGDTTYGGRPRPPRGCRPELAAALQSFPRQALHAIRLGLIHPATGAEMHWEVPMASDLE 309
Query: 247 KLITF 251
L+
Sbjct: 310 ALLDL 314
>gi|421503410|ref|ZP_15950359.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mendocina DLHK]
gi|400345883|gb|EJO94244.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mendocina DLHK]
Length = 317
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED +++++K AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 78 IELNIVYEDEHLLVIDKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 137
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ +LV QL+ V R Y + G+ G I+A I R+ R +M V
Sbjct: 138 TTGLMVVAKTLQAQTNLVEQLQKRSVSRIYECICIGVITAGGTIDAPIGRSSSQRQRMAV 197
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y L + H + +R L+TGRTHQIRVHM +G+ +VGD +Y
Sbjct: 198 TD--GGKPAISHYRVLER---YRSH-THVRVKLETGRTHQIRVHMSHVGYPLVGDPVYAG 251
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S+SL+ F RQALHA L L HP ++KW LPDD+ L+T
Sbjct: 252 RFRIPPAASQSLVQSLKEFPRQALHARFLELDHPATGKRMKWESPLPDDLVWLLTL 307
>gi|87119407|ref|ZP_01075304.1| ribosomal large subunit pseudouridine synthase D, partial
[Marinomonas sp. MED121]
gi|86164883|gb|EAQ66151.1| ribosomal large subunit pseudouridine synthase D [Marinomonas sp.
MED121]
Length = 322
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 150/244 (61%), Gaps = 16/244 (6%)
Query: 19 LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78
++ + + I LDI+YED +I+++NK +GLVVHPA+G+ SGTL + +L P +VPRAG
Sbjct: 73 IDDHQPEDIPLDIVYEDEDILVVNKPSGLVVHPAVGHRSGTLMNAILFHCPESAHVPRAG 132
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHRLDK ++GLMVVAK++ + LV+QL+ + R+Y A+ GI G +N I R+P
Sbjct: 133 IVHRLDKETTGLMVVAKTLAAQTELVSQLQDRSMGREYEAVAIGIMTGGGTVNEPIGRHP 192
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM V + N K A+T+Y RL N H IR L+TGRTHQIRVHM + +
Sbjct: 193 QNRQKMAV-EPLNGKDAVTHY-RLLQRFKNHTH---IRLKLETGRTHQIRVHMSHIQFPL 247
Query: 199 VGDNLYGK--KYSKSLI---------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
+GD Y K K+ I F RQALHA +L L HP ++W ++LPDD+
Sbjct: 248 LGDPQYAGRMKMPKACIPELRDELQNFRRQALHAKRLELSHPITGEFMEWEVDLPDDMKH 307
Query: 248 LITF 251
LI
Sbjct: 308 LIEL 311
>gi|398876533|ref|ZP_10631688.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM67]
gi|398883914|ref|ZP_10638861.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM60]
gi|398195740|gb|EJM82769.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM60]
gi|398204299|gb|EJM91103.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM67]
Length = 320
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP ++ W LPDD L+T
Sbjct: 255 RFRIPPAASQTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTL 310
>gi|104783634|ref|YP_610132.1| 23S rRNA pseudouridine synthase [Pseudomonas entomophila L48]
gi|95112621|emb|CAK17349.1| 23S rRNA pseudouridine synthase [Pseudomonas entomophila L48]
Length = 320
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 152/236 (64%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDQILVINKPAGLVVHPAAGHPDGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ +LV+QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTLQAQTNLVDQLQKRSVSRIYECIVVGVVIAGGKIDAPIGRHGGERQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G+ +VGD YG
Sbjct: 201 TD--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGYPLVGDQTYGV 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +++W LPDD L++
Sbjct: 255 RFRIPPAASVAMVEAVKNFPRQALHARFLALDHPTTGERMEWASPLPDDFLWLLSL 310
>gi|157962983|ref|YP_001503017.1| RluA family pseudouridine synthase [Shewanella pealeana ATCC
700345]
gi|157847983|gb|ABV88482.1| pseudouridine synthase, RluA family [Shewanella pealeana ATCC
700345]
Length = 323
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 144/233 (61%), Gaps = 17/233 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDIIYED+ I+++NK AGLVVHP GN SGTL + LL P + VPRAGIVHRLDK+
Sbjct: 82 IDLDIIYEDDHILVINKQAGLVVHPGAGNQSGTLMNALLHHCPGIELVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+P R M V
Sbjct: 142 TTGLMVVAKTVEAQTHLVTALQAREITREYEAIVTGTIIAGGTVDEPIDRHPTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N KPA+T+Y R+A + H L R L++GRTHQIRVHM +GH +VGD +Y
Sbjct: 202 V--HNGKPAMTHY-RVAEKF--RAHTRL-RLRLESGRTHQIRVHMAHIGHVLVGDPVYAG 255
Query: 207 K-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
+ + + F RQALHA +L L HP + W+ +P+D+ KL
Sbjct: 256 RPRPPKGAAPDFFETYMGFRRQALHAVRLELAHPFTCEIMSWQAPIPEDMVKL 308
>gi|254468337|ref|ZP_05081743.1| ribosomal large subunit pseudouridine synthase D [beta
proteobacterium KB13]
gi|207087147|gb|EDZ64430.1| ribosomal large subunit pseudouridine synthase D [beta
proteobacterium KB13]
Length = 346
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I++LNK LVVHP GN +GTL + LL L +PR GIVHRLDK+
Sbjct: 82 ISLDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLEKLPRGGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+ +S +L++QL+ V R+Y A+VWG N +I I R+P R KM V
Sbjct: 142 TTGLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNKVIQKPIGRHPRQRTKMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+K N K A T E L + + +RC LKTGRTHQIRVHM IVGD YG
Sbjct: 202 TK-VNGKDAETKLEILERF----NYHTYVRCLLKTGRTHQIRVHMLDNNSPIVGDKDYGL 256
Query: 206 ------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K L+ F+RQALHA LGLIHPK N ++KW I+LP+D+ +L++
Sbjct: 257 KKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDMKELLS 312
>gi|421751517|ref|ZP_16188561.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis AS_713]
gi|421753370|ref|ZP_16190366.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 831]
gi|421757096|ref|ZP_16193983.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 80700103]
gi|421758958|ref|ZP_16195796.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 70102010]
gi|424674279|ref|ZP_18111200.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 70001275]
gi|409087384|gb|EKM87482.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 831]
gi|409087469|gb|EKM87565.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis AS_713]
gi|409091539|gb|EKM91534.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 70102010]
gi|409092927|gb|EKM92889.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 80700103]
gi|417435082|gb|EKT90006.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. tularensis 70001275]
Length = 332
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNTLLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYKQGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K I RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303
>gi|167627646|ref|YP_001678146.1| lysozyme [Francisella philomiragia subsp. philomiragia ATCC 25017]
gi|167597647|gb|ABZ87645.1| Lysozyme [Francisella philomiragia subsp. philomiragia ATCC 25017]
Length = 328
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 144/224 (64%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I++EDN+II+++K +VVHP GN++GT+ + LL YP +PRAGIVHRLDK+
Sbjct: 86 IDLNIVFEDNDIIVIDKPIDMVVHPGAGNMTGTISNALLHKYPNQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+ +NR KMT+
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLSERKVSRKYLAIVEGEIYEEGTINQPIGRDLNNRTKMTI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N K A+T+Y+ + +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NHKGKEAITHYKPIEV----YDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K NRQALHAYKL +HP + ++++ LP+D+
Sbjct: 260 SSTKLDKVGIENINRQALHAYKLSFMHPTSQKIVRFKSKLPEDM 303
>gi|300718035|ref|YP_003742838.1| ribosomal large subunit pseudouridine synthase D [Erwinia
billingiae Eb661]
gi|299063871|emb|CAX60991.1| Ribosomal large subunit pseudouridine synthase D [Erwinia
billingiae Eb661]
Length = 325
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 146/239 (61%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +I+++NK GLVVHP GN GT+ + LL +P + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDEDILVINKPRGLVVHPGAGNPDGTVLNALLHHFPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L++ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVESLQLREITREYEAVAIGRMTAGGTVDEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPTGKPATTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S+S I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASESFIAMLRKFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVDLIA 310
>gi|408356929|ref|YP_006845460.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
gi|407727700|dbj|BAM47698.1| pseudouridine synthase RluD [Amphibacillus xylanus NBRC 15112]
Length = 304
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 150/226 (66%), Gaps = 11/226 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRA 77
K E + I LDIIYED++I+I+NK G+VVHP++G+ SGTL + LL L + R
Sbjct: 72 KIEPEAIPLDIIYEDDDILIVNKPKGMVVHPSVGHHSGTLVNALLHHTKQLTTINGEDRP 131
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR 136
GIVHR+D+++SGL+++AK+ ++Y L QLK QR YLA+V G IP G I A I R
Sbjct: 132 GIVHRIDRDTSGLLIIAKTDQAYESLAQQLKDREAQRTYLALVHGAIPHEYGTIEAPIGR 191
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
NP +R M V N K A+TY+E + IN+K+ +LI+C+LKTGRTHQIRVH++++G
Sbjct: 192 NPKDRQSMAVVN--NGKEAITYFEVIER--INQKY-TLIKCSLKTGRTHQIRVHLKYIGF 246
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
IVGD YG+K K+ + QALHA +LG HPK N + + + P
Sbjct: 247 PIVGDPKYGRK--KTFQEDGQALHACELGFRHPKTNEWMHFEVEPP 290
>gi|337755077|ref|YP_004647588.1| ribosomal large subunit pseudouridine synthase D [Francisella sp.
TX077308]
gi|336446682|gb|AEI35988.1| Ribosomal large subunit pseudouridine synthase D [Francisella sp.
TX077308]
Length = 328
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 143/224 (63%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L I++ED++I++++K +VVHP GN++GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLSIVFEDDDIVVIDKPIDMVVHPGAGNITGTISNALLHKYSNQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y LV QL V RKYLA+V G G +N I R+P+NR KM V
Sbjct: 146 TSGLMVAAKSSIAYHSLVQQLSERQVSRKYLAIVEGEIYEEGTVNQPIGRDPNNRTKMAV 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+TYY+ + +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITYYKPVEV----YDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 ---KYSKSLIFN--RQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
K K I N RQALHAYKL IHP + ++++ LP+D+
Sbjct: 260 SSTKLEKIGIENIHRQALHAYKLSFIHPISQKMVRFKSKLPEDM 303
>gi|330501971|ref|YP_004378840.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mendocina NK-01]
gi|328916257|gb|AEB57088.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mendocina NK-01]
Length = 327
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED +++++K AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 88 IELNIVYEDEHMLVIDKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ +LV QL+ V R Y + G+ G I+A I R+ R +M V
Sbjct: 148 TTGLMVVAKTLQAQTNLVEQLQKRTVSRIYECICIGVITAGGTIDAPIGRSSSQRQRMAV 207
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y L + H + +R L+TGRTHQIRVHM +G+ +VGD +Y
Sbjct: 208 TD--GGKPAISHYRVLER---YRSH-THVRVKLETGRTHQIRVHMTHVGYPLVGDPVYAG 261
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +L+ F RQALHA L L HP ++KW LPDD+ L+T
Sbjct: 262 RFRIPPAASPTLVQSLKEFPRQALHARFLELDHPATGQRMKWESELPDDLVWLLTL 317
>gi|197284293|ref|YP_002150165.1| 23S rRNA pseudouridine synthase D [Proteus mirabilis HI4320]
gi|227357802|ref|ZP_03842150.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
ATCC 29906]
gi|425067191|ref|ZP_18470307.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
WGLW6]
gi|425073296|ref|ZP_18476402.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
WGLW4]
gi|194681780|emb|CAR40996.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
HI4320]
gi|227161912|gb|EEI46930.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
ATCC 29906]
gi|404595274|gb|EKA95819.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
WGLW4]
gi|404601486|gb|EKB01895.1| ribosomal large subunit pseudouridine synthase D [Proteus mirabilis
WGLW6]
Length = 325
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 149/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP ++NVPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYRYPEIVNVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G++N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQRREITREYEAVATGRMTAGGLVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + + H L R L+TGRTHQIRVHM + H ++GD
Sbjct: 198 HMAVHP--MGKPAVTHYRVMEHF---RAHTRL-RLRLETGRTHQIRVHMAHIHHPLIGDQ 251
Query: 203 LYG----------KKYSKSL-IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG +++ ++L F+RQALHA L L HP ++++W LPDD+ +LI
Sbjct: 252 LYGGRPRPLKGASEEFRETLRRFDRQALHATMLRLYHPITGIEMEWHAPLPDDMVELI 309
>gi|374705467|ref|ZP_09712337.1| RluA family pseudouridine synthase [Pseudomonas sp. S9]
Length = 277
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 38 IALDIVYEDDDILVINKPAGLVVHPAAGHSDGTLLNALLHHVPDIVNVPRAGIVHRLDKD 97
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV+QL+ V R Y +V G+ G I+A I R+ R +MTV
Sbjct: 98 TTGLMVVAKNIQAQTQLVDQLQKRTVSRIYECVVIGVITAGGKIDAPIGRSSSQRQRMTV 157
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H R L+TGRTHQIRVHM +G ++GD +Y
Sbjct: 158 TD--GGKQAISHY-RVLERFRSHTH---ARVKLETGRTHQIRVHMSHVGFPLIGDPVYAG 211
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +L+ F RQALHA L L HP ++KW LPDD+ L+T
Sbjct: 212 RFRIPPAASPTLVQSLKEFPRQALHARFLELDHPVTGKRMKWESALPDDLVWLLTL 267
>gi|386010292|ref|YP_005928569.1| RluA family pseudouridine synthase [Pseudomonas putida BIRD-1]
gi|313496998|gb|ADR58364.1| RluA family pseudouridine synthase [Pseudomonas putida BIRD-1]
Length = 352
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ I+++NK AGLVVHPA G+ SGTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 113 IELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKD 172
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV Q++ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 173 TTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAV 232
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G +VGD YG
Sbjct: 233 TD--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGFPLVGDQTYGG 286
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +KW LPDD L++
Sbjct: 287 RFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESPLPDDFVWLLSL 342
>gi|388546358|ref|ZP_10149634.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
M47T1]
gi|388275595|gb|EIK95181.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
M47T1]
Length = 320
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVTQLQSRTVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + S++ F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAANPSMVDALKTFPRQALHARFLELEHPTTGERMSWESPLPDDFVWLLSL 310
>gi|148545913|ref|YP_001266015.1| RluA family pseudouridine synthase [Pseudomonas putida F1]
gi|395447024|ref|YP_006387277.1| RluA family pseudouridine synthase [Pseudomonas putida ND6]
gi|397693570|ref|YP_006531450.1| RluA family pseudouridine synthase [Pseudomonas putida DOT-T1E]
gi|148509971|gb|ABQ76831.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
putida F1]
gi|388561021|gb|AFK70162.1| RluA family pseudouridine synthase [Pseudomonas putida ND6]
gi|397330300|gb|AFO46659.1| RluA family pseudouridine synthase [Pseudomonas putida DOT-T1E]
Length = 352
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ I+++NK AGLVVHPA G+ SGTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 113 IELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKD 172
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV Q++ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 173 TTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAV 232
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G +VGD YG
Sbjct: 233 TD--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGFPLVGDQTYGG 286
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +KW LPDD L++
Sbjct: 287 RFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESPLPDDFVWLLSL 342
>gi|257453790|ref|ZP_05619068.1| ribosomal large subunit pseudouridine synthase D [Enhydrobacter
aerosaccus SK60]
gi|257448717|gb|EEV23682.1| ribosomal large subunit pseudouridine synthase D [Enhydrobacter
aerosaccus SK60]
Length = 380
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 148/240 (61%), Gaps = 22/240 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED ++++NK GLVVHP GN SGTL + LL YP +PRAG+VHR+DK
Sbjct: 141 IPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTLPRAGLVHRIDKE 200
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP---KLNGMINAAIMRNPHNRIK 143
+SGLMV+AK +S +HL+NQLK V R Y A+V + I+A I R+P R K
Sbjct: 201 TSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTIDAPIGRHPTQRTK 260
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M V + KPA+T+ E++ T I + +SL+ L+TGRTHQIRVH+ LG ++GD L
Sbjct: 261 MAVVS--SGKPAVTHLEKI-TAISDA--VSLVSVRLETGRTHQIRVHLSNLGFPLLGDPL 315
Query: 204 YGKKYSKSLI--------------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG +++ F RQALHAY+LG IHPK +K + LP+D+ +L+
Sbjct: 316 YGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLPEDMQQLL 375
>gi|220933994|ref|YP_002512893.1| RluA family pseudouridine synthase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995304|gb|ACL71906.1| pseudouridine synthase, RluA family [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 315
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
++ + I L++IYED+ ++++NK GLV HPA GN GTL + LL P L +PRAGI
Sbjct: 77 SEDRAEDIPLEVIYEDDSLLVINKPPGLVTHPAAGNREGTLVNALLHHAPDLAALPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK +SGL+VVA++++++ LV QL+ V R+YLA+V G+ G ++A I R+P
Sbjct: 137 VHRLDKETSGLLVVARTLEAHTDLVRQLQARTVGREYLALVQGVIVAGGTVDAPIGRHPV 196
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+R +M V K A+T+Y A H +L+R L+TGRTHQIRVHM + H IV
Sbjct: 197 DRKRMAVVA--GGKEAITHYRVEA----RLPHHTLLRVRLETGRTHQIRVHMAHVHHPIV 250
Query: 200 GDNLYG---------KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD +YG + ++++ F RQALHA +L L+HP ++ W +P D + L
Sbjct: 251 GDPVYGGRLKVPAGLSEADQAVLRGFRRQALHAARLELVHPVTGEEMGWEAPMPADFAAL 310
Query: 249 I 249
+
Sbjct: 311 L 311
>gi|422009844|ref|ZP_16356826.1| 23S rRNA pseudouridine synthase D [Providencia rettgeri Dmel1]
gi|414092017|gb|EKT53696.1| 23S rRNA pseudouridine synthase D [Providencia rettgeri Dmel1]
Length = 325
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/265 (41%), Positives = 155/265 (58%), Gaps = 30/265 (11%)
Query: 9 IIIKPKKNFF-------------LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
+I KPK+ F N+ E + I L++IYED +I+I+NK LVVHP GN
Sbjct: 51 VINKPKEKVFGSEQILIDALIEEDNRWEPQDIPLNVIYEDEDILIINKPRDLVVHPGAGN 110
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL YP + +VPRAGIVHRLDK+++GLMVVAK++ + HLV L+ + R+
Sbjct: 111 PDGTILNALLYRYPEIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVEALQRREITRE 170
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
Y A+ G GM+ I R+P R M V + KPA+T+Y + + H L
Sbjct: 171 YEAVAVGRMTAGGMVEEPISRHPTKRTHMAV--HPMGKPAITHYRVMEH---FRAHTRL- 224
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKL 224
R L+TGRTHQIRVHM + H ++GD LYG K ++ + F+RQALHA L
Sbjct: 225 RLRLETGRTHQIRVHMAHINHPLIGDPLYGGRPRPLKGATEEFLEVMRNFDRQALHATML 284
Query: 225 GLIHPKNNLKLKWRINLPDDISKLI 249
L HP + ++++W LPDD+ KLI
Sbjct: 285 RLYHPISGIQMEWHAPLPDDMVKLI 309
>gi|397685713|ref|YP_006523032.1| pseudouridine synthase [Pseudomonas stutzeri DSM 10701]
gi|395807269|gb|AFN76674.1| pseudouridine synthase [Pseudomonas stutzeri DSM 10701]
Length = 324
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI++ED I++LNK AGLVVHPA G+ GTL + LL P LINVPRAGIVHRLDK+
Sbjct: 85 IPLDIVFEDEHILVLNKPAGLVVHPAAGHADGTLLNALLHHVPDLINVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTRLVEQLQARSVSRIYEAIVIGVIITGGTVDAPIGRHGQQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA+++Y R+ + H +R L+TGRTHQIRVHM LG+ +VGD LY
Sbjct: 205 VD--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHLGYPLVGDPLYSG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + +L+ F RQALHA L L HP +LKW L DD L+T
Sbjct: 259 RFRIPPAANPTLVQTLREFPRQALHARFLELDHPVTGERLKWESPLTDDFVWLLTL 314
>gi|421524705|ref|ZP_15971326.1| RluA family pseudouridine synthase [Pseudomonas putida LS46]
gi|402751168|gb|EJX11681.1| RluA family pseudouridine synthase [Pseudomonas putida LS46]
Length = 320
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ I+++NK AGLVVHPA G+ SGTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV Q++ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G +VGD YG
Sbjct: 201 TD--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGFPLVGDQTYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +KW LPDD L++
Sbjct: 255 RFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESPLPDDFVWLLSL 310
>gi|268593137|ref|ZP_06127358.1| ribosomal large subunit pseudouridine synthase D [Providencia
rettgeri DSM 1131]
gi|291311410|gb|EFE51863.1| ribosomal large subunit pseudouridine synthase D [Providencia
rettgeri DSM 1131]
Length = 325
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/265 (41%), Positives = 155/265 (58%), Gaps = 30/265 (11%)
Query: 9 IIIKPKKNFF-------------LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
+I KPK+ F N+ E + I L++IYED +I+I+NK LVVHP GN
Sbjct: 51 VINKPKEKVFGSEQILIDALIEEDNRWEPQDIPLNVIYEDEDILIINKPRDLVVHPGAGN 110
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL YP + +VPRAGIVHRLDK+++GLMVVAK++ + HLV L+ + R+
Sbjct: 111 PDGTILNALLYRYPEIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVEALQRREITRE 170
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
Y A+ G GM+ I R+P R M V + KPA+T+Y + + H L
Sbjct: 171 YEAVAVGRMTAGGMVEEPISRHPTKRTHMAV--HPMGKPAVTHYRVMEH---FRAHTRL- 224
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKL 224
R L+TGRTHQIRVHM + H ++GD LYG K ++ + F+RQALHA L
Sbjct: 225 RLRLETGRTHQIRVHMAHINHPLIGDPLYGGRPRPLKGATEEFLEVMRNFDRQALHATML 284
Query: 225 GLIHPKNNLKLKWRINLPDDISKLI 249
L HP + ++++W LPDD+ KLI
Sbjct: 285 RLYHPISGIQMEWHAPLPDDMVKLI 309
>gi|325273287|ref|ZP_08139564.1| RluA family pseudouridine synthase [Pseudomonas sp. TJI-51]
gi|324101572|gb|EGB99141.1| RluA family pseudouridine synthase [Pseudomonas sp. TJI-51]
Length = 320
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ I+++NK AGLVVHPA G+ SGTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDHIMVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV Q++ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G +VGD YG
Sbjct: 201 TD--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGFPLVGDQTYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +KW LPDD L++
Sbjct: 255 RFRIPPAASPTMVEAVKSFPRQALHARFLALAHPITGEVMKWESPLPDDFVWLLSL 310
>gi|167031685|ref|YP_001666916.1| RluA family pseudouridine synthase [Pseudomonas putida GB-1]
gi|166858173|gb|ABY96580.1| pseudouridine synthase, RluA family [Pseudomonas putida GB-1]
Length = 352
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ I+++NK AGLVVHPA G+ SGTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 113 IELDIVYEDDHIMVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKD 172
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ LV Q++ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 173 TTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAV 232
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM +G +VGD YG
Sbjct: 233 TD--GGKPAVSHY-RVLKRFRSHTH---VRVKLETGRTHQIRVHMAHVGFPLVGDQTYGG 286
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP +KW LPDD L++
Sbjct: 287 RFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEIMKWESPLPDDFVWLLSL 342
>gi|418021317|ref|ZP_12660426.1| pseudouridine synthase [Candidatus Regiella insecticola R5.15]
gi|347603325|gb|EGY28181.1| pseudouridine synthase [Candidatus Regiella insecticola R5.15]
Length = 325
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 145/235 (61%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED++I+++NK GLVVHP GN GT+ + LL YP + NVPRAGI+HRLDK+
Sbjct: 82 IPLNIVYEDDDILVINKPRGLVVHPGAGNADGTILNALLHYYPAISNVPRAGIIHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + HLV L+ + R+Y A+ G G + I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTHLVEALQARKITREYEAIAIGNMIAGGTVEEPIARHASKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA+T+Y R+ H +R L+TGRTHQIRVHM ++ H +VGD LYG
Sbjct: 202 --HPMGKPAVTHY-RIMEHFRAHTH---LRLRLETGRTHQIRVHMSFIRHPLVGDPLYGS 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S S I F+RQALHA L L HP + ++++WR LP DI LI+
Sbjct: 256 RACHPKGASDSFIKILRGFDRQALHASMLRLKHPISGIEMEWRAALPQDIVDLIS 310
>gi|167823889|ref|ZP_02455360.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
pseudomallei 9]
Length = 318
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 122/184 (66%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L I+YED+ I++++K AGLVVHPA GN SGTL + LL Y +PRAGIVHRLDK
Sbjct: 126 VPLSIVYEDDTIVVVDKPAGLVVHPAAGNWSGTLLNGLLHRYADAAGLPRAGIVHRLDKE 185
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ + LV QL+ V+R+Y A+ WG G I+A I R+P R +M V
Sbjct: 186 TSGLMVVARTLAAQTDLVRQLQARTVKRRYFALAWGRMPDEGTIDAPIGRDPRERTRMAV 245
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA T++ + T + ++ +S I C+L+TGRTHQIRVH +GH ++GD +YG+
Sbjct: 246 VTGAAGKPARTHFRTVDTTLWERQPVSAIHCDLETGRTHQIRVHCAHVGHPLLGDPVYGR 305
Query: 207 KYSK 210
K
Sbjct: 306 ARGK 309
>gi|402821994|ref|ZP_10871503.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
LH128]
gi|402264475|gb|EJU14329.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
LH128]
Length = 313
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 15/234 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE----IYPFLINVPRAGIVHR 82
I L ++YED +II++K AGLVVHPA GNL GTL + LL + V R GIVHR
Sbjct: 79 IPLAVVYEDEHLIIVDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVARPGIVHR 138
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
+DK++SGL+VVAK+ K++ L Q H ++R Y A+V G P + G + AI R+ H+R
Sbjct: 139 IDKDTSGLLVVAKTDKAHEGLAVQFADHSIERAYHAVVGGRPVPVAGTVRGAIARSSHDR 198
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM + ++ K A+T++ LA + +L+ C L+TGRTHQ+RVHM +GH ++GD
Sbjct: 199 KKMALVEDGRGKHAVTHFRTLAA----LRGATLVECRLETGRTHQVRVHMASIGHALLGD 254
Query: 202 NLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG+ S L F+RQALHA +LG +HP + ++ + LPDD+ LI
Sbjct: 255 PVYGRTPSPLRPILSRLGFSRQALHAAELGFVHPVSQERVHFASPLPDDMRTLI 308
>gi|406915781|gb|EKD54830.1| hypothetical protein ACD_60C00041G0021 [uncultured bacterium]
Length = 320
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 163/260 (62%), Gaps = 20/260 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G E I++ + + + + I L+I++ED+ ++I+NK G+VVHPA GN S TL
Sbjct: 57 LVRGSEEIVVHAAQKTW-GPWQAEPIILNIVHEDDALLIINKPTGMVVHPAAGNPSNTLL 115
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P L +PRAG++HRLDK++SGL+V+AK+ ++IHL Q+K + R Y A+V
Sbjct: 116 NALLHHVPSLNQLPRAGMIHRLDKDTSGLLVIAKTQPAFIHLSRQMKARSIARIYQAIVN 175
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLK 180
G+ G IN I R+P R +M V N + K A+T+Y ++ K +H + I+ L+
Sbjct: 176 GVLISGGTINEPISRHPIQRKQMAV--NPSGKNAITHYR-----VVEKYRHHTRIKVQLE 228
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHP 229
TGRTHQIRVHM ++ H I+GD YG + S++LI F QALHA +LGLIHP
Sbjct: 229 TGRTHQIRVHMAYIQHAILGDQTYGGRLQLPRGASQTLIEMLRTFKHQALHAAELGLIHP 288
Query: 230 KNNLKLKWRINLPDDISKLI 249
++++ +LPDD+ KLI
Sbjct: 289 LTEKEMRFTASLPDDMQKLI 308
>gi|91794214|ref|YP_563865.1| pseudouridine synthase, RluD [Shewanella denitrificans OS217]
gi|91716216|gb|ABE56142.1| ribosomal large subunit pseudouridine synthase D [Shewanella
denitrificans OS217]
Length = 324
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80
K + + I L+I+YED+ III+NK AGLVVHP GN GTL + LL P + VPRAGIV
Sbjct: 76 KAKAQAIDLNIVYEDDHIIIVNKQAGLVVHPGAGNADGTLMNALLHHCPAIEMVPRAGIV 135
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHN 140
HRLDK+++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+P
Sbjct: 136 HRLDKDTTGLMVVAKTVEAQTHLVAALQAREIVREYEAIVLGTMTAGGTVDEPIERHPTK 195
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
R +M+V +P++T+Y R++ + H L R L++GRTHQIRVHM ++GH +VG
Sbjct: 196 RTQMSV--QHGGRPSVTHY-RVSEKF--RAHTRL-RLRLESGRTHQIRVHMDYIGHVLVG 249
Query: 201 DNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
D +YG K S F RQALHA +L L HP + + W+ +P+D+
Sbjct: 250 DPVYGGRPKPPKNASPEFFDILKNFGRQALHAVRLELAHPYTHEIMSWQAPIPEDM 305
>gi|212712902|ref|ZP_03321030.1| hypothetical protein PROVALCAL_03999 [Providencia alcalifaciens DSM
30120]
gi|422019414|ref|ZP_16365962.1| 23S rRNA pseudouridine synthase D [Providencia alcalifaciens Dmel2]
gi|212684447|gb|EEB43975.1| hypothetical protein PROVALCAL_03999 [Providencia alcalifaciens DSM
30120]
gi|414103253|gb|EKT64831.1| 23S rRNA pseudouridine synthase D [Providencia alcalifaciens Dmel2]
Length = 325
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LD++YED +I+I+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDVVYEDEDILIINKPRDLVVHPGAGNPDGTILNALLYRYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G GM+ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQRREITREYEAVAVGRMTAGGMVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + + H L R L+TGRTHQIRVHM + H ++GD
Sbjct: 198 HMAV--HPMGKPAVTHYRVMEH---FRAHTRL-RLRLETGRTHQIRVHMAHINHPLIGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K ++ + F+RQALHA L L HP ++++W LPDD+ +LI
Sbjct: 252 LYGGRPRPLKGATEEFLEVMRKFDRQALHATMLRLYHPITGIQMEWHAPLPDDMVELI 309
>gi|398850113|ref|ZP_10606821.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM80]
gi|398249475|gb|EJN34861.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM80]
Length = 320
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP +++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKHFPRQALHARFLELDHPTTGIRMSWESPLPEDFVWLLTL 310
>gi|340000318|ref|YP_004731202.1| ftsH suppressor protein SfhB [Salmonella bongori NCTC 12419]
gi|339513680|emb|CCC31435.1| ftsH suppressor protein SfhB [Salmonella bongori NCTC 12419]
Length = 326
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 156/256 (60%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G EL+ I + + ++ E + I LDI+YED++II++NK LVVHP GN GT+ + L
Sbjct: 61 GGELVAIDAEIDEE-SRFEPQDIPLDIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNAL 119
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP + +VPRAGIVHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G
Sbjct: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHM 179
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G +N I R+P R M+V KPA+T+Y + ++ + +R L+TGRT
Sbjct: 180 TAGGTVNEPISRHPTKRTHMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRT 233
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM + H +VGD +YG K S+ I F+RQALHA L L HP + +
Sbjct: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGI 293
Query: 234 KLKWRINLPDDISKLI 249
+++W +P D+ +LI
Sbjct: 294 EMEWHAPIPQDMVELI 309
>gi|399006619|ref|ZP_10709142.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM17]
gi|425901647|ref|ZP_18878238.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397892869|gb|EJL09345.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398121935|gb|EJM11546.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM17]
Length = 320
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKHFPRQALHARFLELDHPTTGERMSWESPLPEDFVWLLTL 310
>gi|383648684|ref|ZP_09959090.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
elodea ATCC 31461]
Length = 318
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 152/254 (59%), Gaps = 19/254 (7%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
+++++ PK E + I L++++ED +I+L+K AGLVVHPA GN GTL + LL
Sbjct: 67 FQVVVPDPKPAH----NEAQDIPLNVVFEDEHLIVLDKPAGLVVHPAAGNFDGTLVNALL 122
Query: 66 EIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
++ V R GIVHR+DK++SGLMV AK+ +++ L +Q K H + R+Y A+
Sbjct: 123 HHCAGQLSGIGGVARPGIVHRIDKDTSGLMVAAKTDPAHVGLAHQFKAHSIDRRYRAITS 182
Query: 122 GIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
G +L G +NA + R+P NR K+ V + K A+T++ + I + + + C L+
Sbjct: 183 GAVRLTQGTVNAPLARSPSNRKKIAVCAEGHGKHAITHWRK----IRELRDATYVECRLE 238
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLK 234
TGRTHQ+RVHM +GH +VGD LYG S +L F RQALHA +LG IHP N
Sbjct: 239 TGRTHQVRVHMASIGHPLVGDPLYGSMRSTHRGLLATLGFQRQALHAARLGFIHPINGNA 298
Query: 235 LKWRINLPDDISKL 248
L + +P D+ +L
Sbjct: 299 LAFDSEIPADMQEL 312
>gi|315126099|ref|YP_004068102.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas sp. SM9913]
gi|315014613|gb|ADT67951.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas sp. SM9913]
Length = 325
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 146/238 (61%), Gaps = 18/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKL+I+YED++I+++NK GLVVHP GN GT+ + LL YP +INVPRAGIVHR
Sbjct: 78 EAQDIKLNIVYEDDDILVINKPMGLVVHPGAGNPDGTVLNALLHYYPEIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I++ HLV L K R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIQAQTHLVKALQKRENFTREYEALCNGTMTAGGMVEKPIGRHATQR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 THMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLNHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG K + L F RQALHA KL + HP + W+ +PDD+ ++
Sbjct: 252 QSYGGRPRPPKGATPELFELLRSFKRQALHAVKLSIAHPITGEMMTWQAPIPDDMVQM 309
>gi|304414306|ref|ZP_07395674.1| 23S rRNA pseudouridine synthase [Candidatus Regiella insecticola
LSR1]
gi|304283520|gb|EFL91916.1| 23S rRNA pseudouridine synthase [Candidatus Regiella insecticola
LSR1]
Length = 325
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 145/235 (61%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YEDN+I+++NK GLVVHP GN GT+ + LL YP + NVPRAGI+HRLDK+
Sbjct: 82 IPLNIVYEDNDILVINKPRGLVVHPGAGNADGTILNALLHYYPAISNVPRAGIIHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + HLV L+ + R+Y A+ G G + I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTHLVEALQARKITREYEAIAIGNMIAGGAVEEPIARHASKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA+T+Y R+ H +R L+TGRTHQIRVHM ++ H +VGD LYG
Sbjct: 202 --HPMGKPAVTHY-RIMEHFRAHTH---LRLRLETGRTHQIRVHMSFIRHPLVGDPLYGS 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S + I F+RQALHA L L HP + ++++WR LP DI LI+
Sbjct: 256 RACHPKGASDAFIKILRGFDRQALHASMLRLKHPISGIEMEWRAALPQDIVDLIS 310
>gi|294011927|ref|YP_003545387.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
japonicum UT26S]
gi|390167381|ref|ZP_10219372.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
gi|390167660|ref|ZP_10219641.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
gi|292675257|dbj|BAI96775.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
japonicum UT26S]
gi|389589726|gb|EIM67740.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
gi|389590083|gb|EIM68088.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
Length = 320
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 151/238 (63%), Gaps = 21/238 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L I++ED ++I+++K AGLVVHPA GNL GTL + LL ++ V R GIVHR
Sbjct: 86 IPLAIVHEDADLIVIDKPAGLVVHPAAGNLDGTLVNALLHHCQGRLSGIGGVARPGIVHR 145
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNR 141
+DK++SGL+VVAKS +++ L Q K H + R Y A+V+G+P+ G +++ I R+ +R
Sbjct: 146 IDKDTSGLLVVAKSDRAHEGLAQQFKAHSIDRLYAAIVYGVPQPAAGTVDSWIGRSDADR 205
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM V + K A+T+Y ERL + +++ C L+TGRTHQ+RVHM LGH +
Sbjct: 206 KKMAVHREGRGKHAVTHYRTMERL-------RGAAMVECRLETGRTHQVRVHMAHLGHPL 258
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+GD +YG++ ++L FNRQALHA +LG IHP L + LP D+ +L++
Sbjct: 259 IGDPVYGRERKGFKSILETLGFNRQALHAKRLGFIHPVTGEALSFDSKLPADMQELLS 316
>gi|398986110|ref|ZP_10691381.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM24]
gi|399011816|ref|ZP_10714146.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM16]
gi|398117400|gb|EJM07152.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM16]
gi|398152898|gb|EJM41408.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM24]
Length = 320
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP +++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKHFPRQALHARFLELDHPTTGVRMSWESPLPEDFVWLLTL 310
>gi|319763720|ref|YP_004127657.1| pseudouridine synthase [Alicycliphilus denitrificans BC]
gi|317118281|gb|ADV00770.1| pseudouridine synthase, RluA family [Alicycliphilus denitrificans
BC]
Length = 332
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 149/252 (59%), Gaps = 12/252 (4%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + K E + LD+++ED +++++K AGLVVHPA GN SGTL + LL
Sbjct: 88 VRMRPTQQSQAFKPES--LPLDVVHEDEHLLVIDKPAGLVVHPAPGNWSGTLLNALLGRD 145
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI--PKL 126
+ VPRAGIVHRLDK++SGLMVVA++ + LV + V R+YLA+ WG
Sbjct: 146 AQAMQVPRAGIVHRLDKDTSGLMVVARNRAAMDALVRMIAAREVSRQYLALAWGAWSGSE 205
Query: 127 NGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
I A I R+P NR++M V K A T ++ LA+G + + L+RC L TGRT
Sbjct: 206 QRRIRAPIGRDPRNRLRMAVVDLGQHAGKEACTDFDLLASG----EEVCLVRCTLHTGRT 261
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVHM + H +V D LYG + RQALHA++L HP +++ LP+D
Sbjct: 262 HQIRVHMASIRHPLVADALYGGAVGGPM--RRQALHAFRLAFTHPVTGKPMEFHAPLPED 319
Query: 245 ISKLITFSGIKW 256
+ + + F G+++
Sbjct: 320 MRQALDFWGLRY 331
>gi|333901992|ref|YP_004475865.1| RluA family pseudouridine synthase [Pseudomonas fulva 12-X]
gi|333117257|gb|AEF23771.1| pseudouridine synthase, RluA family [Pseudomonas fulva 12-X]
Length = 324
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 150/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED +I++++K AGLVVHPA G+ GTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 85 IELNIVYEDEQILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV+QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 145 TTGLMVVAKTIEAQTRLVDQLQKRTVSRIYECIVIGVITSGGKINAPIGRSSSQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H R L+TGRTHQIRVHM +G +VGD +Y
Sbjct: 205 TD--GGKPAVSHY-RVLERFRSHTH---ARVKLETGRTHQIRVHMSHIGFPLVGDPVYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP ++KW+ LPDD L++
Sbjct: 259 RFRIPPAASQTMVQNLKEFPRQALHARFLELDHPITGERMKWQSPLPDDFVWLLSL 314
>gi|331269364|ref|YP_004395856.1| RluA family pseudouridine synthase [Clostridium botulinum
BKT015925]
gi|329125914|gb|AEB75859.1| pseudouridine synthase, RluA family [Clostridium botulinum
BKT015925]
Length = 304
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 155/232 (66%), Gaps = 15/232 (6%)
Query: 19 LNKTEKKV----IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFL 71
+ K +KK+ I++DI+YEDN+II++NKS G+VVHPA N SGTL + LL + L
Sbjct: 66 IEKEDKKINPENIEMDILYEDNDIIVINKSQGMVVHPATSNYSGTLVNALLYHCDTLSTL 125
Query: 72 INVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMI 130
+ R GIVHR+DK++SG++VVAK+ K++ L QLK H ++R+Y+A+V GI K NG++
Sbjct: 126 NDDTRPGIVHRIDKDTSGVLVVAKNNKAHEILAEQLKEHSMKREYIAVVEGIVKEENGLV 185
Query: 131 NAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
+ + RNP +RIKM V + K A+T+YE L N +L++C L+TGRTHQIRVH
Sbjct: 186 DEPLGRNPKDRIKMAVVE--GGKNAVTHYEVLKRFKKN----TLVKCILETGRTHQIRVH 239
Query: 191 MQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
M ++GH +VGD +YG K + N Q LHA KLG IHP +++ +LP
Sbjct: 240 MSYIGHPLVGDPMYGFK-KQRFKLNGQMLHAKKLGFIHPTTEKYIEFESDLP 290
>gi|398382781|ref|ZP_10540862.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
gi|397726181|gb|EJK86622.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
Length = 298
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 150/238 (63%), Gaps = 21/238 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI++ED ++I+++K AGLVVHPA GNL GTL + LL ++ V R GIVHR
Sbjct: 64 IPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCDGQLSGIGGVARPGIVHR 123
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNR 141
+DK++SGL+VVAKS K++ L Q K H + R Y A+V+GIP +G ++A I R+ +R
Sbjct: 124 IDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPTPGSGTVDAWIGRSDADR 183
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM V + K A+T+Y ERL + +++ C L+TGRTHQ+RVHM LGH +
Sbjct: 184 KKMAVHREGRGKHAVTHYRVMERL-------RGAAMVECRLETGRTHQVRVHMAHLGHPL 236
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+GD +YG+ ++L F RQALHA +LG IHP L + LP D+ +L++
Sbjct: 237 IGDPVYGRDRKGFKSILETLSFKRQALHAKRLGFIHPLTGEPLAFDSPLPADMQELLS 294
>gi|194323822|ref|ZP_03057598.1| pseudouridine synthase, RluA family [Francisella novicida FTE]
gi|208779913|ref|ZP_03247257.1| pseudouridine synthase, RluA family [Francisella novicida FTG]
gi|194322186|gb|EDX19668.1| pseudouridine synthase, RluA family [Francisella tularensis subsp.
novicida FTE]
gi|208744368|gb|EDZ90668.1| pseudouridine synthase, RluA family [Francisella novicida FTG]
Length = 317
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 139/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 71 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 130
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 131 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAI 190
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 191 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 244
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K RQALHAYKL IHP +K++ LP+D+
Sbjct: 245 SSTKLEKLAITTPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 288
>gi|427407864|ref|ZP_18898066.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
gi|425713827|gb|EKU76839.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
Length = 316
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 150/238 (63%), Gaps = 21/238 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI++ED ++I+++K AGLVVHPA GNL GTL + LL ++ V R GIVHR
Sbjct: 82 IPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCDGQLSGIGGVARPGIVHR 141
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNR 141
+DK++SGL+VVAKS K++ L Q K H + R Y A+V+GIP +G ++A I R+ +R
Sbjct: 142 IDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPTPGSGTVDAWIGRSDADR 201
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM V + K A+T+Y ERL + +++ C L+TGRTHQ+RVHM LGH +
Sbjct: 202 KKMAVHREGRGKHAVTHYRVMERL-------RGAAMVECRLETGRTHQVRVHMAHLGHPL 254
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+GD +YG+ ++L F RQALHA +LG IHP L + LP D+ +L++
Sbjct: 255 IGDPVYGRDRKGFKSILETLGFKRQALHAKRLGFIHPVTEEPLAFDSPLPADMQELLS 312
>gi|422016625|ref|ZP_16363206.1| 23S rRNA pseudouridine synthase D [Providencia burhodogranariea DSM
19968]
gi|414092610|gb|EKT54285.1| 23S rRNA pseudouridine synthase D [Providencia burhodogranariea DSM
19968]
Length = 325
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 148/241 (61%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LD+IYED++I+++NK GLVVHP GN T+ + LL YP +++VPRAGI
Sbjct: 75 NRWEPQDIPLDVIYEDDDILVINKPRGLVVHPGAGNPDKTILNALLYRYPEIVDVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G GM+ I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAVGRMTAGGMVEEPISRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H ++
Sbjct: 195 KRTHMAVHP--MGKPAITHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLI 248
Query: 200 GDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + + F+RQALHA L L HP + ++++W LPDD+ +L
Sbjct: 249 GDALYGGRPRPLKGATEEFFDVMRKFDRQALHATMLRLYHPISGIQMEWHAPLPDDMVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|119946871|ref|YP_944551.1| RluA family pseudouridine synthase [Psychromonas ingrahamii 37]
gi|119865475|gb|ABM04952.1| ribosomal large subunit pseudouridine synthase D [Psychromonas
ingrahamii 37]
Length = 322
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 161/266 (60%), Gaps = 33/266 (12%)
Query: 9 IIIKPKKNFFLNKT-------EKKV------IKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
+I +P++ + +T E +V IKL+I+YED++I+++NK AGLVVHP GN
Sbjct: 51 VINRPREKVYTGQTVGVQAVLEDEVVFKAQKIKLEIVYEDDDILVINKPAGLVVHPGAGN 110
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL +P +I VPRAGIVHRLDK+++GLMVVAK++ + HLV L+ + R+
Sbjct: 111 PDGTVLNALLHHFPQIIEVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVTSLQAREITRE 170
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI--S 173
Y A+ G G + A I R+ +R+KM V+ K ALT+Y +++K+ +
Sbjct: 171 YEAIAMGGFTAGGFVEAPIGRDKVHRVKMAVNST-GGKHALTHYR------VSEKYRAHT 223
Query: 174 LIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAY 222
+R L+TGRTHQIRVHM +GH + GD +YG K S++L+ F RQALHA
Sbjct: 224 RLRLRLETGRTHQIRVHMMHIGHVLTGDPVYGGRPRPPKGASEALLATLRGFRRQALHAT 283
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKL 248
L L HP ++W LP D+++L
Sbjct: 284 MLRLAHPITGEIMEWHAPLPADMAEL 309
>gi|440730269|ref|ZP_20910362.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens DAR61454]
gi|440379218|gb|ELQ15817.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens DAR61454]
Length = 335
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+++I+LNK AGLVVHP GN SGTL + LL P L ++PRAGIVHRLDK+
Sbjct: 92 IPLEVLYEDDQVIVLNKPAGLVVHPGAGNPSGTLVNALLYRDPSLASLPRAGIVHRLDKD 151
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG MVVA+++ ++ LV QL V R+YLA+V G G A I R+P +R++M V
Sbjct: 152 TSGAMVVARTLPAHTSLVAQLSARDVHRQYLAVVAGPLVSGGTATAPIDRHPRDRLRMAV 211
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + + A+T+Y ER + H +L C L+TGRTHQIRVHM L H I+GD L
Sbjct: 212 RE--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKHPIIGDPL 262
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + LI F RQALHA L HP ++ +P D+ +L+
Sbjct: 263 YGGALKLPKGATDELIAELRGFKRQALHAETLEFKHPLTGEPVRASAAVPADLQRLLA 320
>gi|433677831|ref|ZP_20509763.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430817051|emb|CCP40193.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 335
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+++I+LNK AGLVVHP GN SGTL + LL P L ++PRAGIVHRLDK+
Sbjct: 92 IPLEVLYEDDQVIVLNKPAGLVVHPGAGNPSGTLVNALLYRDPSLASLPRAGIVHRLDKD 151
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG MVVA+++ ++ LV QL V R+YLA+V G G A I R+P +R++M V
Sbjct: 152 TSGAMVVARTLPAHTSLVAQLSARDVHRQYLAVVAGPLVSGGTATAPIDRHPRDRLRMAV 211
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + + A+T+Y ER + H +L C L+TGRTHQIRVHM L H I+GD L
Sbjct: 212 RE--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKHPIIGDPL 262
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + LI F RQALHA L HP ++ +P D+ +L+
Sbjct: 263 YGRALKLPKGATDELIAELRGFKRQALHAETLEFKHPLTGEPVRASAAVPADLQRLLA 320
>gi|226328713|ref|ZP_03804231.1| hypothetical protein PROPEN_02608 [Proteus penneri ATCC 35198]
gi|225201899|gb|EEG84253.1| pseudouridine synthase, RluA family [Proteus penneri ATCC 35198]
Length = 325
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + NVPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYRYPEIANVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G++N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQRREITREYEAVATGRMTAGGLVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + + H L R L+TGRTHQIRVHM + H ++GD
Sbjct: 198 HMAV--HPMGKPAVTHYRVMEHF---RAHTRL-RLRLETGRTHQIRVHMAHIHHALIGDQ 251
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LY K S L +F+RQALHA L L HP ++++W LPDD+ KLI
Sbjct: 252 LYAGRPRPLKGASDELRETLRLFDRQALHATMLRLYHPITGIEMEWHAPLPDDMVKLI 309
>gi|269140174|ref|YP_003296875.1| 23S rRNA pseudouridine synthase D [Edwardsiella tarda EIB202]
gi|387868694|ref|YP_005700163.1| Ribosomal large subunit pseudouridine synthase D [Edwardsiella
tarda FL6-60]
gi|267985835|gb|ACY85664.1| 23S rRNA pseudouridine synthase D [Edwardsiella tarda EIB202]
gi|304560007|gb|ADM42671.1| Ribosomal large subunit pseudouridine synthase D [Edwardsiella
tarda FL6-60]
Length = 280
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 147/242 (60%), Gaps = 17/242 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGI
Sbjct: 29 NRWEAQDIALDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPQIADVPRAGI 88
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P
Sbjct: 89 VHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGTMTAGGTVREPIARHPT 148
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M+V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +V
Sbjct: 149 KRTHMSVHP--MGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLV 202
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + S I F+RQALHA L L HP + ++++W +P+D+ +L
Sbjct: 203 GDPLYGGRPRPPRDASPEFIRVLREFDRQALHATMLRLYHPISGIEMEWHAPIPEDMQRL 262
Query: 249 IT 250
I
Sbjct: 263 IA 264
>gi|330824017|ref|YP_004387320.1| RluA family pseudouridine synthase [Alicycliphilus denitrificans
K601]
gi|329309389|gb|AEB83804.1| pseudouridine synthase, RluA family [Alicycliphilus denitrificans
K601]
Length = 336
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 149/252 (59%), Gaps = 12/252 (4%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + K E + LD+++ED +++++K AGLVVHPA GN SGTL + LL
Sbjct: 92 VRMRPTQQSQAFKPES--LPLDVVHEDEHLLVIDKPAGLVVHPAPGNWSGTLLNALLGRD 149
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI--PKL 126
+ VPRAGIVHRLDK++SGLMVVA++ + LV + V R+YLA+ WG
Sbjct: 150 AQAMQVPRAGIVHRLDKDTSGLMVVARNRAAMDALVRMIAAREVSRQYLALAWGAWSGSE 209
Query: 127 NGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
I A I R+P NR++M V K A T ++ LA+G + + L+RC L TGRT
Sbjct: 210 QRRIRAPIGRDPRNRLRMAVVDLGQHAGKEACTDFDLLASG----EEVCLVRCTLHTGRT 265
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVHM + H +V D LYG + RQALHA++L HP +++ LP+D
Sbjct: 266 HQIRVHMASIRHPLVADALYGGAVGGPM--RRQALHAFRLAFTHPVTGKPMEFHAPLPED 323
Query: 245 ISKLITFSGIKW 256
+ + + F G+++
Sbjct: 324 MRQALDFWGLRY 335
>gi|23015589|ref|ZP_00055361.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 327
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 153/265 (57%), Gaps = 27/265 (10%)
Query: 11 IKPKKNFFLN-------KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
+KP + F + + E + I L ++YED ++I+++K AG+VVHPA GN TL +
Sbjct: 62 VKPGQCFTVEVPPDAPAEPEAQDIALSVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNA 121
Query: 64 LL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
LL E + V R GIVHR+DK++SGL+V AK+ ++ L Q H ++R Y A+
Sbjct: 122 LLAHCGESLAGIGGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLAAQFAEHSLERAYWAL 181
Query: 120 VWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
VWG P G I I RNP++R KM V K+ KPALT Y L + +SL+ C
Sbjct: 182 VWGTPSPRQGEIEGNIGRNPNDRKKMAVVKS-GGKPALTRYRVLKS--FAGGAVSLVECR 238
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGK-KYSKSLI-----------FNRQALHAYKLGL 226
L TGRTHQIRVHM GH ++GD +YG+ + S+ ++ F RQALHAY LG
Sbjct: 239 LATGRTHQIRVHMTAQGHPLIGDPVYGRIRGSRKVVLPPEVKESLTTFPRQALHAYLLGF 298
Query: 227 IHPKNNLKLKWRINLPDDISKLITF 251
HP ++++ +P DI+ L+ F
Sbjct: 299 SHPTKGYEVRFESPIPADINALMRF 323
>gi|92112630|ref|YP_572558.1| ribosomal large subunit pseudouridine synthase D [Chromohalobacter
salexigens DSM 3043]
gi|91795720|gb|ABE57859.1| ribosomal large subunit pseudouridine synthase D [Chromohalobacter
salexigens DSM 3043]
Length = 325
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L I++ED+++++++K AGLVVHPA GN GTL + LL P + +PRAGIVHRLD
Sbjct: 85 QAMALSIVHEDDDVLVIDKPAGLVVHPAAGNPDGTLLNALLHHAPGQMQLPRAGIVHRLD 144
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++ ++ LV QL+ V R+Y A+V G G ++A I R+P +R +
Sbjct: 145 KDTTGLMVVAKTLAAHASLVEQLQARTVSREYDAVVTGRMTAGGSVDAPIGRHPKDRKRQ 204
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V+ + KPA+T+Y R+ H +RC L+TGRTHQIRVHM ++GD +Y
Sbjct: 205 AVTP--SGKPAVTHY-RVVERFPAHTH---VRCRLETGRTHQIRVHMAHRRFPLIGDPVY 258
Query: 205 GKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
+ K ++ F RQALHA KL +HP L +R LPDD+ L+ F
Sbjct: 259 AGRLKMPAGATDALKDVLRHFPRQALHARKLAFVHPGTGETLTFRAPLPDDMLMLLDF 316
>gi|387824917|ref|YP_005824388.1| Ribosomal large subunit pseudouridine synthase D [Francisella cf.
novicida 3523]
gi|332184383|gb|AEE26637.1| Ribosomal large subunit pseudouridine synthase D [Francisella cf.
novicida 3523]
Length = 331
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
IKL+IIYED++II+++K +VVHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 IKLNIIYEDDDIIVIDKPVNMVVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+ NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDSTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N K A+T+Y T I +L+ C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NHRGKEAITHY----TPIEVYDGFTLLECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K RQALHAYKL IHPK +K++ LP+D+
Sbjct: 260 SSTKLEKLAITTPTRQALHAYKLSFIHPKTAKIVKFKSKLPEDM 303
>gi|332141865|ref|YP_004427603.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Deep ecotype']
gi|410862269|ref|YP_006977503.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii AltDE1]
gi|327551887|gb|AEA98605.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Deep ecotype']
gi|410819531|gb|AFV86148.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii AltDE1]
Length = 327
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 154/255 (60%), Gaps = 20/255 (7%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
EL+ ++ + + + +E + I LDI+YED I+++NK A LVVHP GN SGT+ + LL
Sbjct: 66 ELVTVQAEMDVQVT-SEAQDIALDIVYEDEHILVINKPADLVVHPGAGNPSGTVLNALLN 124
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
P + VPRAGIVHRLDK+++GLMVVAK+I + HLV+QL+ V R+Y A+ G
Sbjct: 125 HVPEIDKVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVDQLQRREVSREYEAIALGTMVA 184
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTH 185
G+++ I R+ R M V + KPA+T++ +I K + + +R L+TGRTH
Sbjct: 185 GGIVDEPIGRHATKRTHMAVRE--MGKPAITHFR-----VIEKFRAYTHLRLKLETGRTH 237
Query: 186 QIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLK 234
QIRVHM + H ++GD +YG K S+ I F RQALHA +L L HP+
Sbjct: 238 QIRVHMAHIKHPLLGDQVYGGRPRLPKGASEDFIGVLRGFQRQALHAAQLSLFHPETEEW 297
Query: 235 LKWRINLPDDISKLI 249
+ W+ LP D+ L+
Sbjct: 298 MTWKAPLPQDMQDLL 312
>gi|381199618|ref|ZP_09906765.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
yanoikuyae XLDN2-5]
Length = 298
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 150/238 (63%), Gaps = 21/238 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI++ED ++I+++K AGLVVHPA GNL GTL + LL ++ V R GIVHR
Sbjct: 64 IPLDIVHEDADLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCDGQLSGIGGVARPGIVHR 123
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNR 141
+DK++SGL+VVAKS K++ L Q K H + R Y A+V+GIP +G ++A I R+ +R
Sbjct: 124 IDKDTSGLLVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPTPGSGTVDAWIGRSDADR 183
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM V + K A+T+Y ERL + +++ C L+TGRTHQ+RVHM LGH +
Sbjct: 184 KKMAVHREGRGKHAVTHYRVMERL-------RGAAMVECRLETGRTHQVRVHMAHLGHPL 236
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+GD +YG+ ++L F RQALHA +LG IHP L + LP D+ +L++
Sbjct: 237 IGDPVYGRDRKGFKSILETLGFKRQALHAKRLGFIHPVTEEPLAFDSPLPADMQELLS 294
>gi|289662940|ref|ZP_06484521.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. vasculorum NCPPB 702]
Length = 331
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN GTL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMT 316
>gi|421873629|ref|ZP_16305241.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
gi|372457416|emb|CCF14790.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
Length = 298
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 159/248 (64%), Gaps = 20/248 (8%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
+ P K K E + + LDI+YED++++++NK GLVVHPA+G+ +GTL + L+
Sbjct: 58 VPPPKEL---KIEAQAMDLDIVYEDSDVVVVNKPRGLVVHPALGHYTGTLVNGLMYHCKD 114
Query: 71 L--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL 126
L IN V R GIVHR+DK++SGL+++AK+ K++ L QLK H V RKY+A+V G IP
Sbjct: 115 LSGINGVMRPGIVHRIDKDTSGLLMIAKNDKAHASLAAQLKEHTVNRKYVALVHGEIPHE 174
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGR 183
G I+A I R+P NR +M V N+KPA+T++ ER+ K +L+ L+TGR
Sbjct: 175 MGTIDAPIGRDPKNRQQMAVVFG-NSKPAVTHFVVLERM-------KDFTLVELKLETGR 226
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
THQIRVHM+++G+ + GD YG + K+L N QALHA LG IHP +++ +LP
Sbjct: 227 THQIRVHMKYIGYPLAGDPKYGPR--KTLDINGQALHAKTLGFIHPSTGEYMEFEADLPQ 284
Query: 244 DISKLITF 251
++ I F
Sbjct: 285 ELQAEIQF 292
>gi|398944097|ref|ZP_10671064.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM41(2012)]
gi|398992530|ref|ZP_10695495.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM21]
gi|407368575|ref|ZP_11115107.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
mandelii JR-1]
gi|398136831|gb|EJM25909.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM21]
gi|398158506|gb|EJM46850.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM41(2012)]
Length = 320
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KYS----------KSL-IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LPDD L+T
Sbjct: 255 RFRIPPAASVTMVESLKAFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTL 310
>gi|346643236|ref|YP_262374.2| ribosomal large subunit pseudouridine synthase D [Pseudomonas
protegens Pf-5]
gi|341580388|gb|AAY94516.2| ribosomal large subunit pseudouridine synthase D [Pseudomonas
protegens Pf-5]
Length = 320
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHIPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP +++ W LPDD L++
Sbjct: 255 RFRIPPAASQTMVDSLKNFPRQALHARFLELDHPTTGIRMSWESPLPDDFVWLLSL 310
>gi|118497849|ref|YP_898899.1| ribosomal large subunit pseudouridine synthase D [Francisella
novicida U112]
gi|254374659|ref|ZP_04990140.1| hypothetical protein FTDG_00834 [Francisella novicida GA99-3548]
gi|118423755|gb|ABK90145.1| ribosomal large subunit pseudouridine synthase D [Francisella
novicida U112]
gi|151572378|gb|EDN38032.1| hypothetical protein FTDG_00834 [Francisella novicida GA99-3548]
Length = 332
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 139/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SSTKLEKLAITTPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303
>gi|359787426|ref|ZP_09290474.1| ribosomal large subunit pseudouridine synthase D [Halomonas sp.
GFAJ-1]
gi|359295307|gb|EHK59581.1| ribosomal large subunit pseudouridine synthase D [Halomonas sp.
GFAJ-1]
Length = 319
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 152/248 (61%), Gaps = 18/248 (7%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G+E++++K + E + I LDI+YED+ ++++NK+AG+VVHPA GN GTL +
Sbjct: 58 LHGHEMLVLKATIEED-TRFEPQDIPLDIVYEDDAVMVINKAAGMVVHPAAGNPDGTLLN 116
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL +P L VPRAGIVHRLDK+++GLM+VAK++ + LV QL+ V R+Y A+V G
Sbjct: 117 ALLHHHPALAEVPRAGIVHRLDKDTTGLMMVAKTLPAQTALVEQLQARSVSRQYDAVVIG 176
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
P I+A I R+P +R + V+ KPA+T+Y R+ H +RC L+TG
Sbjct: 177 KPVAGSTIDAPIGRHPKDRKRQAVTT--AGKPAVTHY-RVVERFRAHTH---VRCTLETG 230
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYS---------KSLI--FNRQALHAYKLGLIHPKN 231
RTHQIRVHM + ++GD LY + K ++ F RQALHA KL +HP +
Sbjct: 231 RTHQIRVHMAHARYPLIGDPLYSGRAKLPPGAAEPLKEILREFPRQALHARKLSFVHPVS 290
Query: 232 NLKLKWRI 239
L ++I
Sbjct: 291 GETLTFQI 298
>gi|416573078|ref|ZP_11767662.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363572445|gb|EHL56337.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
Length = 326
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + NVPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIANVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|330811803|ref|YP_004356265.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423699371|ref|ZP_17673861.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens Q8r1-96]
gi|327379911|gb|AEA71261.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387997145|gb|EIK58475.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens Q8r1-96]
Length = 320
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP ++ W LPDD L+T
Sbjct: 255 RFRIPPAASQTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTL 310
>gi|409417473|ref|ZP_11257522.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
HYS]
Length = 320
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDHILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGGQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
++ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD +YG
Sbjct: 201 TE--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHVNFPLVGDPVYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDALKTFPRQALHARFLELDHPVTGERMGWESPLPDDFVWLLSL 310
>gi|344338532|ref|ZP_08769464.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
gi|343801814|gb|EGV19756.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
Length = 331
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 146/241 (60%), Gaps = 18/241 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I L+ ++ED +I++L+K AGLVVHPA G+ GTL + LL P L VPRAGIVHRLD
Sbjct: 93 EAIPLNPVFEDEQILVLDKPAGLVVHPAAGHRDGTLQNALLNHAPELARVPRAGIVHRLD 152
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GL+VVAK+++++ LV QL+ V R+Y A+V G G I A + R+P R +M
Sbjct: 153 KDTTGLLVVAKTLEAHRSLVEQLQARQVHREYRALVIGEVVAGGRIEAPVGRHPTQRTRM 212
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V +PA+T Y L + + SL+ L+TGRTHQIRVHM H +VGD Y
Sbjct: 213 AVVA--GGRPAITRYRVLERFVGH----SLLAVELETGRTHQIRVHMAHTQHPLVGDRAY 266
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT-FS 252
G K S L+ F RQALHA +LGL HP + W I LP D+++L+ F
Sbjct: 267 GGRPRPPKGASAGLVEALQGFPRQALHALRLGLEHPTLGTAMSWEIPLPADLAELLERFR 326
Query: 253 G 253
G
Sbjct: 327 G 327
>gi|82545047|ref|YP_408994.1| 23S rRNA pseudouridine synthase D [Shigella boydii Sb227]
gi|187732689|ref|YP_001881382.1| 23S rRNA pseudouridine synthase D [Shigella boydii CDC 3083-94]
gi|416260477|ref|ZP_11640265.1| Ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae CDC 74-1112]
gi|81246458|gb|ABB67166.1| suppressor of ftsH mutation [Shigella boydii Sb227]
gi|187429681|gb|ACD08955.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
CDC 3083-94]
gi|320177087|gb|EFW52104.1| Ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae CDC 74-1112]
Length = 326
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GNL GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P+D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPEDMVELI 309
>gi|399519430|ref|ZP_10760225.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399112526|emb|CCH36783.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 324
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED +++++K AGLVVHPA G+ GTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 85 IELNIVYEDEHLLVIDKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ +LV QL+ V R Y + G+ G I+A I R+ R +M V
Sbjct: 145 TTGLMVVAKTLQAQTNLVEQLQKRTVSRIYECICIGMITAGGTIDAPIGRSSSQRQRMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y L + + +R L+TGRTHQIRVHM +G+ +VGD +Y
Sbjct: 205 TD--GGKPAISHYRVLE----RYRSHTHVRVKLETGRTHQIRVHMSHVGYPLVGDPVYAG 258
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +L+ F RQALHA L L HP ++KW LPDD+ L+T
Sbjct: 259 RFRIPPAASPTLVQSLKEFPRQALHARFLELDHPATGKRMKWESALPDDLVWLLTL 314
>gi|374334799|ref|YP_005091486.1| ribosomal large subunit pseudouridine synthase D [Oceanimonas sp.
GK1]
gi|372984486|gb|AEY00736.1| ribosomal large subunit pseudouridine synthase D [Oceanimonas sp.
GK1]
Length = 326
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK AGLVVHP G GTL + LL P + VPRAGIVHR
Sbjct: 78 EPQAIDLNIVYEDDDILVINKPAGLVVHPGAGTPDGTLLNALLHHCPAIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++A I R+P RI
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVSALQARHITREYEAVAIGHMTAGGTVDANIGRHPTQRI 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V+ KPA+T+Y + + H L R L+TGRTHQIRVHM L H +VGD
Sbjct: 198 QMAVTP--TGKPAVTHYRVMEK---FRAHTRL-RLRLETGRTHQIRVHMAHLKHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG + L+ F RQALHA L L HP ++W +PDD+ +L+
Sbjct: 252 VYGGRLKPPRAADPELLEFLRGFKRQALHAVMLRLEHPITGEMMEWHAPIPDDMLQLV 309
>gi|317493978|ref|ZP_07952395.1| RluA family pseudouridine synthase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|365834581|ref|ZP_09376026.1| ribosomal large subunit pseudouridine synthase D [Hafnia alvei ATCC
51873]
gi|316918305|gb|EFV39647.1| RluA family pseudouridine synthase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|364568970|gb|EHM46599.1| ribosomal large subunit pseudouridine synthase D [Hafnia alvei ATCC
51873]
Length = 326
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 146/239 (61%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQNIPLDIVYEDSDILVINKPRDLVVHPGAGNPDGTILNALLYYYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGTMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S+ I F+RQALHA L L HP + ++++W LP D+ LIT
Sbjct: 252 LYGGRPRPPKGASEEFITILRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLIT 310
>gi|416299379|ref|ZP_11652346.1| Ribosomal large subunit pseudouridine synthase D [Shigella flexneri
CDC 796-83]
gi|417683406|ref|ZP_12332753.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
3594-74]
gi|420354033|ref|ZP_14855130.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
4444-74]
gi|420381687|ref|ZP_14881127.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 225-75]
gi|421683753|ref|ZP_16123544.1| 23S rRNA pseudouridine synthase [Shigella flexneri 1485-80]
gi|320185010|gb|EFW59792.1| Ribosomal large subunit pseudouridine synthase D [Shigella flexneri
CDC 796-83]
gi|332091934|gb|EGI97012.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
3594-74]
gi|391277054|gb|EIQ35814.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
4444-74]
gi|391299194|gb|EIQ57158.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 225-75]
gi|404337633|gb|EJZ64084.1| 23S rRNA pseudouridine synthase [Shigella flexneri 1485-80]
Length = 300
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GNL GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P+D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPEDMVELI 283
>gi|385793239|ref|YP_005826215.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678564|gb|AEE87693.1| Ribosomal large subunit pseudouridine synthase D [Francisella cf.
novicida Fx1]
Length = 332
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 139/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQEGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKSLIF-----NRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SSTKLEKLAIKTPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303
>gi|374621760|ref|ZP_09694290.1| RluA family pseudouridine synthase [Ectothiorhodospira sp. PHS-1]
gi|373940891|gb|EHQ51436.1| RluA family pseudouridine synthase [Ectothiorhodospira sp. PHS-1]
Length = 314
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 146/234 (62%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ LD+++ED+ ++++NK AGLVVHPA G+ GTL + LL P L ++PRAGIVHRLDK
Sbjct: 81 LPLDLVHEDDHLLVINKPAGLVVHPAAGHPQGTLVNALLHHAPELAHLPRAGIVHRLDKE 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVA+++ S+ LV QL+ V R+YLA+V G G + A I R+P +R +M V
Sbjct: 141 TSGLLVVARTLASHTDLVRQLQARTVGREYLALVQGALVSGGTVEAPIGRHPVDRKRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ A+T+Y R+ N +L+R NL+TGRTHQIRVHM L H +VGD +YG
Sbjct: 201 VT--GGREAITHY-RVEERFTNH---TLLRVNLETGRTHQIRVHMAHLHHPLVGDPVYGG 254
Query: 206 -KKYSKSLI---------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++ L F RQALHA +L L HP + +W LP+D+ L+
Sbjct: 255 RPRFPAGLSDEAMAILRGFRRQALHATRLTLEHPDGSGSRRWEACLPEDMEALL 308
>gi|378952910|ref|YP_005210398.1| protein RluD [Pseudomonas fluorescens F113]
gi|359762924|gb|AEV65003.1| RluD [Pseudomonas fluorescens F113]
Length = 306
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 67 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 126
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 127 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 186
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 187 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 240
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP ++ W LPDD L+T
Sbjct: 241 RFRIPPAASQTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTL 296
>gi|187931810|ref|YP_001891795.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. mediasiatica FSC147]
gi|187712719|gb|ACD31016.1| ribosomal large subunit pseudouridine synthase D [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 332
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 140/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKS-----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K I RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SLTKLEKLAITIPTRQALHAYKLSFIHPTIAKMVKFKSKLPEDM 303
>gi|126173261|ref|YP_001049410.1| RluA family pseudouridine synthase [Shewanella baltica OS155]
gi|152999620|ref|YP_001365301.1| RluA family pseudouridine synthase [Shewanella baltica OS185]
gi|160874239|ref|YP_001553555.1| RluA family pseudouridine synthase [Shewanella baltica OS195]
gi|217974428|ref|YP_002359179.1| RluA family pseudouridine synthase [Shewanella baltica OS223]
gi|373948484|ref|ZP_09608445.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
gi|378707484|ref|YP_005272378.1| RluA family pseudouridine synthase [Shewanella baltica OS678]
gi|386325672|ref|YP_006021789.1| RluA family pseudouridine synthase [Shewanella baltica BA175]
gi|386340023|ref|YP_006036389.1| RluA family pseudouridine synthase [Shewanella baltica OS117]
gi|418024127|ref|ZP_12663110.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
gi|125996466|gb|ABN60541.1| ribosomal large subunit pseudouridine synthase D [Shewanella
baltica OS155]
gi|151364238|gb|ABS07238.1| pseudouridine synthase, RluA family [Shewanella baltica OS185]
gi|160859761|gb|ABX48295.1| pseudouridine synthase, RluA family [Shewanella baltica OS195]
gi|217499563|gb|ACK47756.1| pseudouridine synthase, RluA family [Shewanella baltica OS223]
gi|315266473|gb|ADT93326.1| pseudouridine synthase, RluA family [Shewanella baltica OS678]
gi|333819817|gb|AEG12483.1| pseudouridine synthase, RluA family [Shewanella baltica BA175]
gi|334862424|gb|AEH12895.1| pseudouridine synthase, RluA family [Shewanella baltica OS117]
gi|353536087|gb|EHC05646.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
gi|373885084|gb|EHQ13976.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
Length = 324
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 146/232 (62%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I LDI+YED++II++NK AGLVVHP GN GTL + LL P + +VPRAGIVHRLD
Sbjct: 80 QAIDLDIVYEDDDIIVINKQAGLVVHPGAGNADGTLMNALLHHCPDIEHVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+ R M
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVMGTMTGGGTVDEPIGRHLTKRTHM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+T+Y R+A N + +R L++GRTHQIRVHM+++GH +VGD +Y
Sbjct: 200 AVL--HSGKPAVTHY-RVAEKFRNH---TRLRLRLESGRTHQIRVHMEYIGHVLVGDPVY 253
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G K S F RQALHA +L L HP + + W+ +P+D+
Sbjct: 254 GGRPKPPKAASPEFFDILKNFKRQALHAVRLELAHPVSCEIMSWQAPIPEDM 305
>gi|254373204|ref|ZP_04988693.1| hypothetical protein FTCG_00787 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570931|gb|EDN36585.1| hypothetical protein FTCG_00787 [Francisella novicida GA99-3549]
Length = 332
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 139/224 (62%), Gaps = 11/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L II+ED++II+++K ++VHP GN +GT+ + LL Y +PRAGIVHRLDK+
Sbjct: 86 INLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV AKS +Y +LV QL V RKYLA+V G G IN I R+P NR KM +
Sbjct: 146 TSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNRTKMAI 205
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N+ K A+T+Y T I +LI C L+TGRTHQIRVHM+ + H +VGD Y K
Sbjct: 206 --NYRGKEAITHY----TPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYNK 259
Query: 207 KYSKSLIF-----NRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+K RQALHAYKL IHP +K++ LP+D+
Sbjct: 260 SSTKLEKLAIKTPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303
>gi|238756473|ref|ZP_04617780.1| Ribosomal large subunit pseudouridine synthase D [Yersinia ruckeri
ATCC 29473]
gi|238705322|gb|EEP97732.1| Ribosomal large subunit pseudouridine synthase D [Yersinia ruckeri
ATCC 29473]
Length = 325
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 150/239 (62%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQEIPLDIVYEDSDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G+++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGKMTAGGLVDEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG + S + I F+RQALHA L L HP + ++++W LP+D+ +LIT
Sbjct: 252 LYGGRPRPPRGASDNFITVLRGFDRQALHATMLRLYHPISGVQMEWHAALPEDMIELIT 310
>gi|83312285|ref|YP_422549.1| pseudouridylate synthase, 23S RNA-specific [Magnetospirillum
magneticum AMB-1]
gi|82947126|dbj|BAE51990.1| Pseudouridylate synthase, 23S RNA-specific [Magnetospirillum
magneticum AMB-1]
Length = 505
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 151/263 (57%), Gaps = 27/263 (10%)
Query: 11 IKPKKNFFLN-------KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
+KP + F ++ + E + I L ++YED ++I+++K AG+VVHPA GN TL +
Sbjct: 240 VKPGQCFVVDVPPDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNA 299
Query: 64 LL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
LL E + V R GIVHR+DK++SGL+V AK+ ++ L Q H ++R Y A+
Sbjct: 300 LLAHCGESLAGIGGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWAL 359
Query: 120 VWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
VWG P G I I RNP++R KM V K+ KPALT Y L + +SL+ C
Sbjct: 360 VWGTPSPRQGEIEGNIGRNPNDRKKMAVVKS-GGKPALTRYRVLKS--FAGGAVSLVECR 416
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGK-----------KYSKSLI-FNRQALHAYKLGL 226
L TGRTHQIRVHM GH +VGD +YG+ + +LI F RQALHAY LG
Sbjct: 417 LATGRTHQIRVHMTTQGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGF 476
Query: 227 IHPKNNLKLKWRINLPDDISKLI 249
HP +++ +P DI+ L+
Sbjct: 477 SHPTKGYDVRFESGMPLDINALM 499
>gi|407794888|ref|ZP_11141908.1| 23S rRNA pseudouridine synthase D [Idiomarina xiamenensis 10-D-4]
gi|407210648|gb|EKE80526.1| 23S rRNA pseudouridine synthase D [Idiomarina xiamenensis 10-D-4]
Length = 321
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I L+I+YED++I+++NK AGLVVHP G GTL + LL +P + VPRAGIVHRLD
Sbjct: 80 QAIPLNIVYEDDDILVINKPAGLVVHPGAGQPDGTLLNALLAHHPAIDQVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++ + HLV+ ++ + R+Y A+ G+ G+++ I R+ R +M
Sbjct: 140 KDTTGLMVVAKTLPAQTHLVSAMQAREITREYEAVCNGVMTAGGLVDEPIGRHSTKRTQM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V N KPA+T+Y R+A H +R L+TGRTHQIRVHM + H ++GD LY
Sbjct: 200 AV--NPMGKPAVTHY-RVAERFRAHSH---LRLRLETGRTHQIRVHMAHIRHPLIGDALY 253
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G K+ S++ + F RQALHA +L L HP + L W+ PDD+ L+
Sbjct: 254 GGRPRPPKQASEAFLTALRGFKRQALHAAQLSLHHPLSGEWLSWQAPTPDDMVALL 309
>gi|157376631|ref|YP_001475231.1| lysozyme [Shewanella sediminis HAW-EB3]
gi|157319005|gb|ABV38103.1| Lysozyme [Shewanella sediminis HAW-EB3]
Length = 323
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 145/237 (61%), Gaps = 17/237 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
K + + I LDI+YED+ I+++NK AGLVVHP GN GTL + LL P + VPRAGI
Sbjct: 75 TKAKAQAIDLDIVYEDDHILVINKQAGLVVHPGAGNSDGTLMNALLHHCPNIELVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVQGSLISGGTVDEPIDRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V N KPA+T+Y R+A + H L R L++GRTHQIRVHM +GH +V
Sbjct: 195 KRTHMAVV--HNGKPAMTHY-RVAEKF--RAHTRL-RLRLESGRTHQIRVHMSHIGHTLV 248
Query: 200 GDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
GD +YG + + + F RQALHA +L L HP + W+ +P+D+
Sbjct: 249 GDPVYGGRPRPPKGVSPEFFEIYMGFKRQALHAIRLELAHPYTCEIMSWQAPVPEDM 305
>gi|144897894|emb|CAM74758.1| ribosomal large subunit pseudouridine synthase D [Magnetospirillum
gryphiswaldense MSR-1]
Length = 327
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 153/265 (57%), Gaps = 27/265 (10%)
Query: 11 IKPKKNFFLNKTEKK-------VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
+KP + F + ++ + L + YED+++I+++K GLVVHPA G+ TL +
Sbjct: 62 VKPGQCFVVAIPPERPADPLPQAMDLSVAYEDDDLIVIDKPPGLVVHPAPGSPDHTLVNA 121
Query: 64 LL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
LL E + V R GIVHR+DK++SGL+VVAK+ +++ L Q +H ++R Y A+
Sbjct: 122 LLAHCGESLSGIGGVKRPGIVHRIDKDTSGLLVVAKNDRAHHGLAEQFSVHSLERAYRAL 181
Query: 120 VWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
VWG+P G I+ I R+P +R KM + + KPALT Y L + +SL+ C
Sbjct: 182 VWGVPMPAQGEIHGNIGRSPQDRKKMAIVSH-GGKPALTRYRVLRS--FAGGAVSLVECR 238
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS------------LIFNRQALHAYKLGL 226
L TGRTHQIRVHM +GH +VGD YG+ S L F RQALHA LG
Sbjct: 239 LATGRTHQIRVHMTSIGHPLVGDQTYGRARSTKVKHLPDQARLALLEFPRQALHASVLGF 298
Query: 227 IHPKNNLKLKWRINLPDDISKLITF 251
IHP + + LK+ +PDD ++L++
Sbjct: 299 IHPNSGVMLKFESQIPDDFNELVSL 323
>gi|283786206|ref|YP_003366071.1| ribosomal large subunit pseudouridine synthase D [Citrobacter
rodentium ICC168]
gi|282949660|emb|CBG89279.1| ribosomal large subunit pseudouridine synthase D [Citrobacter
rodentium ICC168]
Length = 326
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 149/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVELI 309
>gi|260598975|ref|YP_003211546.1| 23S rRNA pseudouridine synthase D [Cronobacter turicensis z3032]
gi|260218152|emb|CBA32977.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
turicensis z3032]
Length = 328
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 152/255 (59%), Gaps = 26/255 (10%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 80 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 139
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 140 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 199
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 200 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 253
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 254 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPVSGILMEWHAPIPQDMVDLIDA 313
Query: 252 ---------SGIKWI 257
G+ W+
Sbjct: 314 LRADFEAHKDGVDWL 328
>gi|397171669|ref|ZP_10495068.1| 23S rRNA pseudouridine synthase D [Alishewanella aestuarii B11]
gi|396086677|gb|EJI84288.1| 23S rRNA pseudouridine synthase D [Alishewanella aestuarii B11]
Length = 324
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 151/258 (58%), Gaps = 24/258 (9%)
Query: 5 GYELIIIK---PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
G E I I+ P++ F + + I LDI++ED I+++NK AGLVVHP GN GTL
Sbjct: 61 GGEQIDIQAELPEEERF----DAEPIALDIVFEDEHILVINKPAGLVVHPGAGNQDGTLL 116
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P + VPRAGIVHRLDK+++GLMV+AK+I + HLV ++ + R+Y A+ +
Sbjct: 117 NALLHHCPSIAEVPRAGIVHRLDKDTTGLMVIAKTIPAQTHLVEAMQAREITREYEAVCY 176
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G + I R+ R M V N N KPA+T+Y + + H L R L+T
Sbjct: 177 GTMTGGGTVKQPIGRHQTKRTLMAV--NENGKPAVTHYRVMEK---YRAHTRL-RLRLET 230
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM ++ H +VGD +YG ++ S+ L+ F RQALHA L L HP
Sbjct: 231 GRTHQIRVHMTFISHPLVGDPVYGGRPRPPRQASEQLLQLMRNFKRQALHAIMLKLAHPI 290
Query: 231 NNLKLKWRINLPDDISKL 248
L+W LPDD+ L
Sbjct: 291 TGQLLEWHAPLPDDMVAL 308
>gi|424924969|ref|ZP_18348330.1| RluA [Pseudomonas fluorescens R124]
gi|404306129|gb|EJZ60091.1| RluA [Pseudomonas fluorescens R124]
Length = 320
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP + ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKHFPRQALHARFLELDHPTSGERMSWESPLPEDFVWLLTL 310
>gi|386818048|ref|ZP_10105266.1| ribosomal large subunit pseudouridine synthase D [Thiothrix nivea
DSM 5205]
gi|386422624|gb|EIJ36459.1| ribosomal large subunit pseudouridine synthase D [Thiothrix nivea
DSM 5205]
Length = 315
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L I+YED+ I+I+NK GLVVHPA GN SGTL + LL P L +PRAGIVHR
Sbjct: 77 EPEDIPLGIVYEDDAIMIINKPVGLVVHPAAGNWSGTLVNALLHHSPSLAMLPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGLMVVAK+++++ LV L+ V R+YLA+V+G I A I R+ +R
Sbjct: 137 LDKDTSGLMVVAKTLEAHTKLVELLQERDVSREYLALVFGQVVAGSTIEANIGRHHIDRK 196
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
K V+ K A+T+Y ER H +L+R +L+TGRTHQIRVH+ W IV
Sbjct: 197 KQAVTD--GGKEAITHYRVEERFP-------HHTLLRVSLETGRTHQIRVHLSWKHMPIV 247
Query: 200 GDNLYGKK------YSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG + S++L F RQALHA KLGL+HP+ + +W +P+D++ L
Sbjct: 248 GDQTYGGRPRVPAGISEALRTALQSFPRQALHATKLGLVHPETSEYREWETPIPEDMAGL 307
Query: 249 ITF 251
+
Sbjct: 308 LAL 310
>gi|77359880|ref|YP_339455.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas haloplanktis
TAC125]
gi|76874791|emb|CAI86012.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Pseudoalteromonas haloplanktis TAC125]
Length = 325
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 141/231 (61%), Gaps = 18/231 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
IKLDI+YED++I+++NK GLVVHP GN GT+ + LL +P +INVPRAGIVHRLDK+
Sbjct: 82 IKLDIVYEDDDILVINKPMGLVVHPGAGNPDGTVLNALLHYHPEIINVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
++GLMVVAK+I + HLV L K R+Y A+ G GM+ I R+ R M
Sbjct: 142 TTGLMVVAKTIPAQTHLVTALQKRENFTREYEALCNGTMTAGGMVEKPIGRHATQRTHMD 201
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H ++GD YG
Sbjct: 202 VHE--QGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLNHPLIGDQSYG 255
Query: 206 ------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
K + L F RQALHA KL + HP + W+ +PDD+
Sbjct: 256 GRPRPPKGATPELFELLRSFKRQALHAVKLSIAHPITGEMMTWQAPIPDDM 306
>gi|384420400|ref|YP_005629760.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzicola BLS256]
gi|353463313|gb|AEQ97592.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzicola BLS256]
Length = 331
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN GTL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IALSVLYEDAQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMT 316
>gi|339009228|ref|ZP_08641800.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|338773706|gb|EGP33237.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
Length = 310
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 158/248 (63%), Gaps = 20/248 (8%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
+ P K K E + + LDI+YED++++++NK GLVVHPA+G+ +GTL + L+
Sbjct: 70 VPPPKEL---KIEAQAMDLDIVYEDSDVVVVNKPRGLVVHPALGHYTGTLVNGLMHHCKD 126
Query: 71 L--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL 126
L IN V R GIVHR+DK++SGL+++AK+ K++ L QLK H V RKY+A+V G IP
Sbjct: 127 LSGINGVMRPGIVHRIDKDTSGLLMIAKNDKAHASLAAQLKEHTVNRKYVALVHGEIPHE 186
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGR 183
G I+A I R+P NR +M V N+KPA+T++ ER+ K +L+ L+TGR
Sbjct: 187 MGTIDAPIGRDPKNRQQMAVVFG-NSKPAVTHFVVLERM-------KDFTLVELKLETGR 238
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
THQIRVHM+++G+ + GD YG + K+L N QALHA LG IHP +++ +P
Sbjct: 239 THQIRVHMKYIGYPLAGDPKYGPR--KTLDINGQALHAKTLGFIHPSTGEYMEFEAEIPQ 296
Query: 244 DISKLITF 251
++ I F
Sbjct: 297 ELQAEIQF 304
>gi|319786173|ref|YP_004145648.1| pseudouridine synthase [Pseudoxanthomonas suwonensis 11-1]
gi|317464685|gb|ADV26417.1| pseudouridine synthase, RluA family [Pseudoxanthomonas suwonensis
11-1]
Length = 326
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 148/237 (62%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LD++Y+D + +L+K AGLVVHP GN +GTL + LL P L +PRAGIVHRLDK+
Sbjct: 83 IPLDVLYQDEHLFVLDKPAGLVVHPGAGNPAGTLVNALLHRDPGLAALPRAGIVHRLDKD 142
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA++++++ LV QL V+R+Y+A+V G G NA I R+P +R++M V
Sbjct: 143 TSGVMVVARTLQAHTGLVAQLAAREVRRQYVAVVVGALVSGGTANAPIDRHPRDRLRMAV 202
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + + A+T+Y ER + H +L C L+TGRTHQIRVHMQ L H IVGD L
Sbjct: 203 RE--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMQHLRHPIVGDPL 253
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG + ++ L+ F RQALHA L HP +++ LP D+ +L+
Sbjct: 254 YGGPLKLPRGATEDLVASLRGFGRQALHAEVLEFQHPVTGAQVRVEAPLPKDMLELL 310
>gi|213023738|ref|ZP_03338185.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 282
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 208 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 265
>gi|417375218|ref|ZP_12144744.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
gi|353597063|gb|EHC53889.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
Length = 326
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|398964713|ref|ZP_10680490.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM30]
gi|398148099|gb|EJM36787.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM30]
Length = 320
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTKLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KPA+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKPAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKHFPRQALHARFLELDHPTTGERMSWESPLPEDFVWLLTL 310
>gi|336312571|ref|ZP_08567519.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
HN-41]
gi|335863815|gb|EGM68937.1| ribosomal large subunit pseudouridine synthase D [Shewanella sp.
HN-41]
Length = 323
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 147/232 (63%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I+L+I+YED+ I+++NK AGLVVHP GN GTL + LL P + +VPRAGIVHRLD
Sbjct: 80 QAIELNIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLHHCPDIEHVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+ R M
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVMGTMTAGGTVDEPIGRHLTKRTHM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + + KPA+T+Y R+A N + +R L++GRTHQIRVHM+++GH +VGD +Y
Sbjct: 200 AV--HHSGKPAVTHY-RVAEKFRNH---TRLRLRLESGRTHQIRVHMEYIGHVLVGDPVY 253
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G K S F RQALHA +L L HP + + W+ +P+D+
Sbjct: 254 GGRPKPPKAASPEFFEILKNFKRQALHAVRLELAHPVSCEIMSWQAPIPEDM 305
>gi|418774362|ref|ZP_13330331.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418803883|ref|ZP_13359499.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392751174|gb|EJA08129.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392772231|gb|EJA28934.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
Length = 326
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPSKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|420327115|ref|ZP_14828861.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
CCH060]
gi|420338044|ref|ZP_14839606.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-315]
gi|391248419|gb|EIQ07660.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
CCH060]
gi|391259918|gb|EIQ18992.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-315]
Length = 300
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GNL GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKNVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P+D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPEDMVELI 283
>gi|292487319|ref|YP_003530191.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
CFBP1430]
gi|292900315|ref|YP_003539684.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ATCC 49946]
gi|428784251|ref|ZP_19001743.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ACW56400]
gi|291200163|emb|CBJ47289.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ATCC 49946]
gi|291552738|emb|CBA19783.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
CFBP1430]
gi|426277390|gb|EKV55116.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ACW56400]
Length = 325
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL +P + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHHFPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ S HLV+ L+ + R+Y A+ G G +N I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPSQTHLVDALQRREITREYEAVAIGRMTAGGTVNEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ +LI
Sbjct: 252 LYGGRPRPPKGASEAFIATLRAFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVELI 309
>gi|16761516|ref|NP_457133.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16765978|ref|NP_461593.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142987|ref|NP_806329.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62181235|ref|YP_217652.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|167553892|ref|ZP_02347635.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167992440|ref|ZP_02573538.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168234182|ref|ZP_02659240.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168239430|ref|ZP_02664488.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168244683|ref|ZP_02669615.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168262167|ref|ZP_02684140.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168464166|ref|ZP_02698083.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168822474|ref|ZP_02834474.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194446496|ref|YP_002041926.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194447791|ref|YP_002046668.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471474|ref|ZP_03077458.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737121|ref|YP_002115673.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197247406|ref|YP_002147565.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262464|ref|ZP_03162538.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197363556|ref|YP_002143193.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242257|ref|YP_002216673.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200389193|ref|ZP_03215805.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204929503|ref|ZP_03220577.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|207858012|ref|YP_002244663.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213051815|ref|ZP_03344693.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213424875|ref|ZP_03357625.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213585773|ref|ZP_03367599.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213619387|ref|ZP_03373213.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213646598|ref|ZP_03376651.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213850144|ref|ZP_03381042.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224584515|ref|YP_002638313.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238909508|ref|ZP_04653345.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289824162|ref|ZP_06543757.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|375002453|ref|ZP_09726793.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375115575|ref|ZP_09760745.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|375120162|ref|ZP_09765329.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|378446077|ref|YP_005233709.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378451424|ref|YP_005238784.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700561|ref|YP_005182518.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378960789|ref|YP_005218275.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|378985223|ref|YP_005248379.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378990040|ref|YP_005253204.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379701897|ref|YP_005243625.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497336|ref|YP_005398025.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386592408|ref|YP_006088808.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|409246361|ref|YP_006887068.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416425228|ref|ZP_11692263.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416428138|ref|ZP_11693638.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416438594|ref|ZP_11699573.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416444258|ref|ZP_11703573.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416451861|ref|ZP_11708611.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416457255|ref|ZP_11712043.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416471315|ref|ZP_11719161.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416474723|ref|ZP_11720288.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489039|ref|ZP_11726008.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416497224|ref|ZP_11729606.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416507692|ref|ZP_11735636.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416515029|ref|ZP_11738440.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416527359|ref|ZP_11743194.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416532859|ref|ZP_11745891.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416540934|ref|ZP_11750684.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416549263|ref|ZP_11755300.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416563430|ref|ZP_11762783.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416579679|ref|ZP_11771473.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416587186|ref|ZP_11775894.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416594254|ref|ZP_11780335.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416597889|ref|ZP_11782276.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606430|ref|ZP_11787772.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416616634|ref|ZP_11794258.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416619234|ref|ZP_11794994.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416632439|ref|ZP_11801428.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416640764|ref|ZP_11805193.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416647654|ref|ZP_11808526.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416661134|ref|ZP_11815356.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416665642|ref|ZP_11816877.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416677947|ref|ZP_11822387.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416701160|ref|ZP_11829283.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416706414|ref|ZP_11831673.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416711906|ref|ZP_11835617.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416718102|ref|ZP_11840210.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416726685|ref|ZP_11846730.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416733319|ref|ZP_11850395.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416737810|ref|ZP_11852952.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416747218|ref|ZP_11858194.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416758179|ref|ZP_11863531.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416765404|ref|ZP_11868785.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416771061|ref|ZP_11872366.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417343116|ref|ZP_12123752.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|417360080|ref|ZP_12134286.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417367240|ref|ZP_12139200.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|417385012|ref|ZP_12150195.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|417477085|ref|ZP_12171386.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|417541086|ref|ZP_12192914.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|418482220|ref|ZP_13051243.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418492657|ref|ZP_13059138.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418497416|ref|ZP_13063836.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418500674|ref|ZP_13067068.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418504928|ref|ZP_13071281.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418510544|ref|ZP_13076824.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418524995|ref|ZP_13090979.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418760240|ref|ZP_13316397.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418766413|ref|ZP_13322489.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418773351|ref|ZP_13329338.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418780078|ref|ZP_13335971.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418782672|ref|ZP_13338533.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418790105|ref|ZP_13345885.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791660|ref|ZP_13347415.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797883|ref|ZP_13353565.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418805632|ref|ZP_13361214.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418809794|ref|ZP_13365343.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418817882|ref|ZP_13373364.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418823716|ref|ZP_13379123.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418825042|ref|ZP_13380364.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418833714|ref|ZP_13388632.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418838048|ref|ZP_13392903.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418841634|ref|ZP_13396452.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418846610|ref|ZP_13401378.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418851347|ref|ZP_13406060.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418856358|ref|ZP_13411004.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418857417|ref|ZP_13412045.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418865543|ref|ZP_13420020.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418865979|ref|ZP_13420444.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419728969|ref|ZP_14255931.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419734209|ref|ZP_14261103.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419739786|ref|ZP_14266529.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419745028|ref|ZP_14271672.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419749083|ref|ZP_14275572.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419786443|ref|ZP_14312170.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419792845|ref|ZP_14318475.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421360373|ref|ZP_15810655.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361706|ref|ZP_15811963.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369379|ref|ZP_15819554.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370960|ref|ZP_15821121.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421378527|ref|ZP_15828611.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421383157|ref|ZP_15833199.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421386612|ref|ZP_15836623.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421389953|ref|ZP_15839929.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421394231|ref|ZP_15844173.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421400927|ref|ZP_15850808.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421403253|ref|ZP_15853106.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421410029|ref|ZP_15859814.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421412140|ref|ZP_15861902.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421415311|ref|ZP_15865039.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421423250|ref|ZP_15872910.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421427904|ref|ZP_15877522.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421430576|ref|ZP_15880162.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421433806|ref|ZP_15883363.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440414|ref|ZP_15889894.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421444183|ref|ZP_15893621.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421450963|ref|ZP_15900331.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569095|ref|ZP_16014801.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421576389|ref|ZP_16021989.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580576|ref|ZP_16026131.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421585215|ref|ZP_16030716.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|421887445|ref|ZP_16318602.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422029083|ref|ZP_16375370.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422034035|ref|ZP_16380083.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427559083|ref|ZP_18930587.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427577457|ref|ZP_18935332.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427580447|ref|ZP_18935831.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427623649|ref|ZP_18945052.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427647666|ref|ZP_18949983.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427659056|ref|ZP_18954645.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427664420|ref|ZP_18959625.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427683410|ref|ZP_18964449.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427802798|ref|ZP_18970117.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436611645|ref|ZP_20513919.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436751234|ref|ZP_20520162.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436798557|ref|ZP_20523441.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436810230|ref|ZP_20529337.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436812332|ref|ZP_20530911.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832906|ref|ZP_20537196.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436852712|ref|ZP_20542770.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436861465|ref|ZP_20548649.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436862272|ref|ZP_20549067.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436872651|ref|ZP_20555533.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436882984|ref|ZP_20561568.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891273|ref|ZP_20565973.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436897933|ref|ZP_20570101.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436903327|ref|ZP_20573791.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436914585|ref|ZP_20579432.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919286|ref|ZP_20582067.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436923292|ref|ZP_20585132.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938809|ref|ZP_20593596.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436944523|ref|ZP_20596970.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436948208|ref|ZP_20598480.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436960077|ref|ZP_20604148.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436973708|ref|ZP_20610832.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985725|ref|ZP_20615175.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436998538|ref|ZP_20620021.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437010456|ref|ZP_20624266.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437015820|ref|ZP_20625965.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437027160|ref|ZP_20630049.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437043327|ref|ZP_20636840.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437053316|ref|ZP_20642431.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437062234|ref|ZP_20647600.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437067151|ref|ZP_20650213.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437078305|ref|ZP_20656002.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437085708|ref|ZP_20660259.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437096521|ref|ZP_20664878.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437115751|ref|ZP_20669507.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437118288|ref|ZP_20670255.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437132348|ref|ZP_20677872.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437140772|ref|ZP_20682746.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437148594|ref|ZP_20687649.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437155764|ref|ZP_20691982.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437163188|ref|ZP_20696497.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437168946|ref|ZP_20699384.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437179492|ref|ZP_20705407.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437188753|ref|ZP_20710548.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437247712|ref|ZP_20714933.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437263397|ref|ZP_20719571.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437269917|ref|ZP_20723086.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437273892|ref|ZP_20724985.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437302720|ref|ZP_20733646.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437315528|ref|ZP_20737216.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437327400|ref|ZP_20740342.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437342504|ref|ZP_20745412.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437362113|ref|ZP_20748356.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437411736|ref|ZP_20752914.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437443259|ref|ZP_20758004.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437467134|ref|ZP_20764354.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437475834|ref|ZP_20766911.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437495017|ref|ZP_20772617.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437503207|ref|ZP_20774824.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437542122|ref|ZP_20782546.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437555928|ref|ZP_20784895.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437579132|ref|ZP_20791657.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437586608|ref|ZP_20793463.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437608522|ref|ZP_20800711.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437624015|ref|ZP_20805183.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437649998|ref|ZP_20809635.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437662973|ref|ZP_20813694.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437677961|ref|ZP_20817452.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437690910|ref|ZP_20820541.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437714415|ref|ZP_20827649.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437731748|ref|ZP_20831461.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437794802|ref|ZP_20837442.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437801403|ref|ZP_20838135.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437829714|ref|ZP_20844236.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|437900560|ref|ZP_20849793.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|437965282|ref|ZP_20852574.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438094747|ref|ZP_20861702.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438104524|ref|ZP_20865881.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438111001|ref|ZP_20868289.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438148246|ref|ZP_20876292.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440766166|ref|ZP_20945165.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771620|ref|ZP_20950534.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445141002|ref|ZP_21385207.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445157176|ref|ZP_21392907.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445171859|ref|ZP_21396268.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445183348|ref|ZP_21398676.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445228314|ref|ZP_21404657.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445266469|ref|ZP_21410120.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445327268|ref|ZP_21412730.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445348330|ref|ZP_21419615.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445354825|ref|ZP_21421630.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452123535|ref|YP_007473783.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|54039251|sp|P65837.2|RLUD_SALTI RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|54041742|sp|P65836.2|RLUD_SALTY RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|25322403|pir||AC0832 pseudouridylate synthase (EC 4.2.1.70) - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16421209|gb|AAL21552.1| pseudouridine synthase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16503817|emb|CAD05842.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138619|gb|AAO70189.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|62128868|gb|AAX66571.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194405159|gb|ACF65381.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194406095|gb|ACF66314.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194457838|gb|EDX46677.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194712623|gb|ACF91844.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195633435|gb|EDX51849.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197095033|emb|CAR60579.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211109|gb|ACH48506.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197240719|gb|EDY23339.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197287851|gb|EDY27239.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197936773|gb|ACH74106.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199606291|gb|EDZ04836.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204321222|gb|EDZ06422.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205321769|gb|EDZ09608.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205329256|gb|EDZ16020.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205331842|gb|EDZ18606.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205336483|gb|EDZ23247.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205341144|gb|EDZ27908.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349079|gb|EDZ35710.1| ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206709815|emb|CAR34167.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224469042|gb|ACN46872.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261247856|emb|CBG25685.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994803|gb|ACY89688.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159209|emb|CBW18724.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913652|dbj|BAJ37626.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087095|emb|CBY96863.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322614488|gb|EFY11419.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621447|gb|EFY18300.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624308|gb|EFY21141.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629393|gb|EFY26171.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633633|gb|EFY30375.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638324|gb|EFY35022.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639762|gb|EFY36445.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647376|gb|EFY43872.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650454|gb|EFY46864.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656053|gb|EFY52353.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661447|gb|EFY57672.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662647|gb|EFY58855.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667020|gb|EFY63195.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671389|gb|EFY67512.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677604|gb|EFY73667.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681570|gb|EFY77600.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322683970|gb|EFY79980.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715721|gb|EFZ07292.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|323130996|gb|ADX18426.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|323195539|gb|EFZ80717.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197912|gb|EFZ83035.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203090|gb|EFZ88122.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323210519|gb|EFZ95403.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323218200|gb|EGA02912.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221534|gb|EGA05947.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223754|gb|EGA08059.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230963|gb|EGA15081.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234685|gb|EGA18771.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238724|gb|EGA22774.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241423|gb|EGA25454.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246879|gb|EGA30846.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253278|gb|EGA37108.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257074|gb|EGA40783.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260453|gb|EGA44064.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264490|gb|EGA47996.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269625|gb|EGA53078.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624429|gb|EGE30774.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|332989587|gb|AEF08570.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353077141|gb|EHB42901.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353587590|gb|EHC46847.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353589721|gb|EHC48439.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|353607069|gb|EHC61105.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|353638687|gb|EHC84186.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353661454|gb|EHD00776.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|357955787|gb|EHJ81485.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|363553270|gb|EHL37526.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363556030|gb|EHL40248.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363564476|gb|EHL48524.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363569329|gb|EHL53291.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363569939|gb|EHL53884.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363571861|gb|EHL55761.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366054676|gb|EHN19024.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366055876|gb|EHN20210.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366064953|gb|EHN29150.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366068544|gb|EHN32684.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366069827|gb|EHN33948.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366076742|gb|EHN40778.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366830314|gb|EHN57186.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372207195|gb|EHP20695.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|374354661|gb|AEZ46422.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|379982935|emb|CCF90875.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380464157|gb|AFD59560.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|381297672|gb|EIC38759.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381298109|gb|EIC39191.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381298285|gb|EIC39365.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381306784|gb|EIC47654.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381312525|gb|EIC53323.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383799452|gb|AFH46534.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392618122|gb|EIX00534.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392621682|gb|EIX04032.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392730158|gb|EIZ87408.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392738002|gb|EIZ95152.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392742868|gb|EIZ99945.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392750560|gb|EJA07522.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392759166|gb|EJA16022.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392759663|gb|EJA16511.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392767927|gb|EJA24687.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392770499|gb|EJA27225.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392783591|gb|EJA40209.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392784385|gb|EJA40986.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392785707|gb|EJA42278.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392786840|gb|EJA43389.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392794916|gb|EJA51302.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392797354|gb|EJA53671.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392808311|gb|EJA64362.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392810063|gb|EJA66089.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392817793|gb|EJA73697.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392818166|gb|EJA74058.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392819683|gb|EJA75541.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392827766|gb|EJA83467.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392835140|gb|EJA90739.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392840827|gb|EJA96361.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395981502|gb|EJH90723.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395982458|gb|EJH91666.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395992140|gb|EJI01259.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395996256|gb|EJI05308.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|395996386|gb|EJI05437.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396005580|gb|EJI14558.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396012435|gb|EJI21332.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396015012|gb|EJI23895.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396015557|gb|EJI24431.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396021761|gb|EJI30576.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396022906|gb|EJI31709.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396029201|gb|EJI37939.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396037729|gb|EJI46375.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396043383|gb|EJI51986.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396048100|gb|EJI56662.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396050477|gb|EJI59001.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396054402|gb|EJI62894.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396061469|gb|EJI69894.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396064556|gb|EJI72941.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396068549|gb|EJI76897.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396068932|gb|EJI77277.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|402518794|gb|EJW26165.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402519781|gb|EJW27141.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402528380|gb|EJW35636.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402530397|gb|EJW37617.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414010480|gb|EKS94490.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414010532|gb|EKS94531.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414011343|gb|EKS95307.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414025626|gb|EKT08944.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414027687|gb|EKT10902.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414038866|gb|EKT21568.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414039631|gb|EKT22301.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414040026|gb|EKT22664.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414044091|gb|EKT26553.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414053650|gb|EKT35636.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414055613|gb|EKT37504.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434938291|gb|ELL45286.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434960437|gb|ELL53816.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434965478|gb|ELL58419.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434969474|gb|ELL62178.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434970228|gb|ELL62857.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434976428|gb|ELL68664.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434981505|gb|ELL73392.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434984645|gb|ELL76373.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434985909|gb|ELL77596.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434999272|gb|ELL90469.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434999508|gb|ELL90682.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435002970|gb|ELL94015.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435005402|gb|ELL96322.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435014064|gb|ELM04674.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435019757|gb|ELM10201.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435022667|gb|ELM12963.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029121|gb|ELM19179.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435034333|gb|ELM24223.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435039528|gb|ELM29298.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435041920|gb|ELM31653.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435053117|gb|ELM42571.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435053341|gb|ELM42793.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435056266|gb|ELM45657.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435061292|gb|ELM50521.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435061938|gb|ELM51134.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435066627|gb|ELM55706.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435083247|gb|ELM71852.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083977|gb|ELM72578.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435085219|gb|ELM73772.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088718|gb|ELM77175.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435089447|gb|ELM77880.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097957|gb|ELM86216.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435101705|gb|ELM89838.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435104394|gb|ELM92449.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435107422|gb|ELM95406.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435114645|gb|ELN02438.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435122618|gb|ELN10133.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435129689|gb|ELN16977.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435132006|gb|ELN19210.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435133225|gb|ELN20405.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435137796|gb|ELN24834.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435142131|gb|ELN29048.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435149423|gb|ELN36119.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435150576|gb|ELN37241.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435155355|gb|ELN41903.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435160851|gb|ELN47095.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435169129|gb|ELN54929.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435171753|gb|ELN57316.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435177015|gb|ELN62362.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435177886|gb|ELN63150.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435180004|gb|ELN65112.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435191581|gb|ELN76137.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435192906|gb|ELN77415.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435204074|gb|ELN87789.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435209940|gb|ELN93212.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435211050|gb|ELN94262.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215783|gb|ELN98267.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435222979|gb|ELO05026.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435226966|gb|ELO08503.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435235715|gb|ELO16498.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435237202|gb|ELO17901.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435241581|gb|ELO21927.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435242378|gb|ELO22689.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435252806|gb|ELO32314.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435254696|gb|ELO34080.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435259774|gb|ELO38988.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435267025|gb|ELO45749.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435268270|gb|ELO46864.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435274341|gb|ELO52457.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435281393|gb|ELO59067.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435286017|gb|ELO63358.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435288921|gb|ELO65914.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435291840|gb|ELO68636.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303914|gb|ELO79736.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435304063|gb|ELO79874.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435314314|gb|ELO87739.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435321629|gb|ELO94037.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435322170|gb|ELO94488.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435331516|gb|ELP02667.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|435339922|gb|ELP08614.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|436420861|gb|ELP18716.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436423566|gb|ELP21376.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|444846610|gb|ELX71771.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444851723|gb|ELX76810.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444861011|gb|ELX85906.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444866251|gb|ELX90989.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444870833|gb|ELX95304.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444876271|gb|ELY00450.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444880863|gb|ELY04926.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444887446|gb|ELY11146.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444888230|gb|ELY11834.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451912539|gb|AGF84345.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 326
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|188575741|ref|YP_001912670.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188520193|gb|ACD58138.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 333
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN GTL + LL P L +VPRAG+VHRLDK+
Sbjct: 90 IALSVLYEDEQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKD 149
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MV+A+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 150 TSGVMVLARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 209
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 210 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 260
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 261 YGGALKLPKGATDELVHELRTFKRQALHAETLQFLHPVSGEPVRASAPVPADLQRLMT 318
>gi|157148106|ref|YP_001455425.1| 23S rRNA pseudouridine synthase D [Citrobacter koseri ATCC BAA-895]
gi|157085311|gb|ABV14989.1| hypothetical protein CKO_03916 [Citrobacter koseri ATCC BAA-895]
Length = 326
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 149/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRQFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|367474965|ref|ZP_09474453.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 285]
gi|365272745|emb|CCD86921.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 285]
Length = 384
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 153/245 (62%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L I+YED++II+++K AGLVVHPA G+ SGTL + L+ ++ V R GIVHR
Sbjct: 134 IPLTIVYEDDDIIVIDKPAGLVVHPAAGHESGTLVNALIAHCGASLSGIGGVKRPGIVHR 193
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMVVAK+ ++ L Q H ++R YLA WG+P + +G INAAI R+
Sbjct: 194 LDKDTTGLMVVAKNDHAHASLSAQFADHGRTGAMERGYLAFAWGLPHRPHGTINAAIDRH 253
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLA--TGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PH R KM V + A+T+YE + TG K +LI C+L+TGRTHQIRVH+ +LG
Sbjct: 254 PHARDKMAVRPK--GREAITHYEVMESFTGRDGKPVAALIACHLETGRTHQIRVHLAYLG 311
Query: 196 HGIVGDNLYGKKY----------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + +++ + RQALHAY L + HP+ ++W LP+
Sbjct: 312 HPLMGDAVYGPHFKTKANQLAPGARTALESLGRQALHAYLLVIEHPRTGEIMRWESELPE 371
Query: 244 DISKL 248
D+S L
Sbjct: 372 DLSLL 376
>gi|429101415|ref|ZP_19163389.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
turicensis 564]
gi|426288064|emb|CCJ89502.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
turicensis 564]
Length = 300
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 151/255 (59%), Gaps = 26/255 (10%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 226 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPVSGILMEWHAPIPQDMVDLIDA 285
Query: 252 ---------SGIKWI 257
G+ W+
Sbjct: 286 LRADFEAHKDGVDWL 300
>gi|325916249|ref|ZP_08178530.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
vesicatoria ATCC 35937]
gi|325537543|gb|EGD09258.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
vesicatoria ATCC 35937]
Length = 331
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED+++++++K AGLVVHP GN GTL + LL P L VPRAG+VHRLDK
Sbjct: 88 IPLSVLYEDDQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALSAVPRAGVVHRLDKE 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDDLVHELRTFKRQALHAETLEFLHPVSGQPVRATAPVPADLQRLMT 316
>gi|440739030|ref|ZP_20918552.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens BRIP34879]
gi|440380402|gb|ELQ16969.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens BRIP34879]
Length = 320
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA+G+ GTL + LL P ++NVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAVGHADGTLLNALLHHVPDIVNVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP + ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASQTMVESLKTFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSL 310
>gi|393764454|ref|ZP_10353064.1| 23S rRNA pseudouridine synthase D [Alishewanella agri BL06]
gi|392604583|gb|EIW87484.1| 23S rRNA pseudouridine synthase D [Alishewanella agri BL06]
Length = 324
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 148/253 (58%), Gaps = 21/253 (8%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E++ P++ F + + I LDII+ED I+++NK AGLVVHP GN GTL + LL
Sbjct: 66 EILADIPEEERF----DAEPIALDIIFEDEHILVINKPAGLVVHPGAGNQDGTLLNALLH 121
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
P + VPRAGIVHRLDK+++GLMV+AK+I + HLV ++ + R+Y A+ +G
Sbjct: 122 HCPAIAEVPRAGIVHRLDKDTTGLMVIAKTIPAQTHLVEAMQAREITREYEAVCYGTMTG 181
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
G + I R+ R M V N N KPA+T+Y + + H L R L+TGRTHQ
Sbjct: 182 GGTVKQPIGRHQTKRTLMAV--NENGKPAVTHYRVMEK---YRAHTRL-RLRLETGRTHQ 235
Query: 187 IRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKL 235
IRVHM ++ H +VGD +YG ++ + L+ F RQALHA L L HP L
Sbjct: 236 IRVHMTFISHPLVGDPVYGGRPRPPRQAGEELLQLLRNFKRQALHAAMLKLAHPITGQLL 295
Query: 236 KWRINLPDDISKL 248
+W LPDD+ L
Sbjct: 296 EWHAPLPDDLVAL 308
>gi|289667068|ref|ZP_06488143.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. musacearum NCPPB 4381]
Length = 331
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN GTL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLEFRHPVSGEPVRASAPVPADLQRLMT 316
>gi|398840841|ref|ZP_10598072.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM102]
gi|398857369|ref|ZP_10613069.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM79]
gi|398901539|ref|ZP_10650392.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM50]
gi|399001521|ref|ZP_10704234.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM18]
gi|398109672|gb|EJL99592.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM102]
gi|398127411|gb|EJM16821.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM18]
gi|398179620|gb|EJM67224.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM50]
gi|398240960|gb|EJN26623.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM79]
Length = 320
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASVTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLSL 310
>gi|389735993|ref|ZP_10189596.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter sp.
115]
gi|388440063|gb|EIL96483.1| ribosomal large subunit pseudouridine synthase D [Rhodanobacter sp.
115]
Length = 324
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 145/242 (59%), Gaps = 21/242 (8%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
++ + I L I++ED +++L+K AGLVVHP GN +GTL + LL P L +PRAGIVH
Sbjct: 75 SQPEAIALTIVHEDEHVLVLDKPAGLVVHPGAGNPTGTLLNALLHHDPILAELPRAGIVH 134
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLDK++SGLMVVAK++ + LV+ L H V+R+Y A+V G G ++ I R+ +R
Sbjct: 135 RLDKDTSGLMVVAKTLPAMTALVDMLSRHDVERQYAAVVLGTLVAGGTVDEPIGRHMGDR 194
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
++ V + K A+T+Y ER + H +L++CNL+TGRTHQIRVHM + H +
Sbjct: 195 LRQAVRDEEDGKRAVTHYRLRERF------RAH-TLLQCNLETGRTHQIRVHMAHIHHPL 247
Query: 199 VGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
VGD LYG K+ + L F RQALHA +L HP + L + P D
Sbjct: 248 VGDPLYGGGLRLPKRATPELTDALRGFRRQALHAERLSFTHPVSGELLSFEAAPPADFEA 307
Query: 248 LI 249
L+
Sbjct: 308 LM 309
>gi|326796213|ref|YP_004314033.1| pseudouridine synthase [Marinomonas mediterranea MMB-1]
gi|326546977|gb|ADZ92197.1| pseudouridine synthase, RluA family [Marinomonas mediterranea
MMB-1]
Length = 327
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 151/238 (63%), Gaps = 16/238 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I +DI+YED I+++NK AGLVVHPA+G+ GTL + +L P +VPRAGIVHR
Sbjct: 77 EAQDIPIDIVYEDEHILVINKPAGLVVHPAVGHREGTLLNAILHHAPETAHVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK ++GLMVVAK++++ LV QL+ + R+Y A+ G+ GM++ I R+P NR
Sbjct: 137 LDKETTGLMVVAKTLQAQTDLVAQLQERSMGREYEAITIGVMTGGGMVDEPIGRHPTNRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V + + K ALT+Y RL N H IR L+TGRTHQIRVHM + + ++GD
Sbjct: 197 RMAV-EPIHGKDALTHY-RLLKRFKNHTH---IRLKLETGRTHQIRVHMSHIQYPLLGDP 251
Query: 203 LY----------GKKYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
Y G++ +L F RQALHA +L L HP ++W ++LPDD+++L+
Sbjct: 252 QYSGRLKMPKACGEELQITLRNFRRQALHAKRLELNHPFTGDWMEWEVDLPDDMAELL 309
>gi|422598529|ref|ZP_16672789.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330988806|gb|EGH86909.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 320
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDLVWLLSL 310
>gi|161615592|ref|YP_001589557.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|378956366|ref|YP_005213853.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|417469200|ref|ZP_12165598.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|161364956|gb|ABX68724.1| hypothetical protein SPAB_03373 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|353628101|gb|EHC76249.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|357206977|gb|AET55023.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 300
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 226 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 283
>gi|423141234|ref|ZP_17128872.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379050406|gb|EHY68298.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 300
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 226 VYGGRPRPPKGASEEFISALRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 283
>gi|58581220|ref|YP_200236.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae KACC 10331]
gi|58425814|gb|AAW74851.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae KACC 10331]
Length = 335
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN GTL + LL P L +VPRAG+VHRLDK+
Sbjct: 92 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKD 151
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MV+A+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 152 TSGVMVLARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 211
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 212 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 262
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 263 YGGALKLPKGATDELVHELRTFKRQALHAETLQFLHPVSGEPVRASAPVPADLQRLMT 320
>gi|307543919|ref|YP_003896398.1| pseudouridine synthase [Halomonas elongata DSM 2581]
gi|307215943|emb|CBV41213.1| pseudouridine synthase, RluA family [Halomonas elongata DSM 2581]
Length = 338
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 143/228 (62%), Gaps = 19/228 (8%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L++++ED+E+++++K GLVVHPA GN GTL + LL P L VPRAGIVHR
Sbjct: 96 EPEDIPLEVVFEDDEVLVIDKPPGLVVHPAAGNPDGTLLNGLLHHCPSLAMVPRAGIVHR 155
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGLMVVAK++ + LV QL+ V R+Y A+ G G ++A I R+P +R
Sbjct: 156 LDKDTSGLMVVAKTLVAQTALVEQLQARTVSREYDAVAVGAMTAGGTLDAPIGRHPRDRK 215
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+ V N + KPA+T+Y +I + + + +RC L+TGRTHQIRVHM L + +VGD
Sbjct: 216 RQAV--NASGKPAVTHYR-----VIERFRAHTHVRCRLETGRTHQIRVHMAHLRYPLVGD 268
Query: 202 NLYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWR 238
+YG + K ++ F RQALHA KL +HP + + +R
Sbjct: 269 PVYGGRLKLPAGAGDTLKEVLREFPRQALHARKLAFVHPTSGATMTFR 316
>gi|285017490|ref|YP_003375201.1| pseudouridine synthase [Xanthomonas albilineans GPE PC73]
gi|283472708|emb|CBA15213.1| probable pseudouridine synthase protein [Xanthomonas albilineans
GPE PC73]
Length = 335
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+++I+LNK AGLVVHP GN GTL + LL P L +PRAGIVHRLDK+
Sbjct: 92 IALEVLYEDDQVIVLNKPAGLVVHPGAGNPGGTLVNALLYRDPGLSALPRAGIVHRLDKD 151
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG MVVA++++++ LV QL V R+YLA+V G G NA I R+P +R++M V
Sbjct: 152 TSGAMVVARTLQAHTALVAQLAARQVHRQYLALVVGALVSGGTANAPIDRHPRDRLRMAV 211
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + + ALT+Y ER + H +L C L+TGRTHQIRVHM L H I+GD L
Sbjct: 212 RE--DGRDALTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKHPIIGDPL 262
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + LI F RQALHA L HP + ++ +P D+ +L+
Sbjct: 263 YGGPLKLPKGAADPLIAELRGFKRQALHAEILEFKHPLHGEPVRVTAAVPADLQRLLA 320
>gi|84623138|ref|YP_450510.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae MAFF 311018]
gi|84367078|dbj|BAE68236.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae MAFF 311018]
Length = 331
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN GTL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MV+A+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVLARTVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLQFLHPVSGEPVRASAPVPADLQRLMT 316
>gi|406597404|ref|YP_006748534.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii ATCC 27126]
gi|407684417|ref|YP_006799591.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'English Channel 673']
gi|407688345|ref|YP_006803518.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|406374725|gb|AFS37980.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii ATCC 27126]
gi|407246028|gb|AFT75214.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'English Channel 673']
gi|407291725|gb|AFT96037.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 327
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 155/255 (60%), Gaps = 20/255 (7%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
EL+ ++ + + + +E + I L+I+YED I+++NK A LVVHP GN SGT+ + LL
Sbjct: 66 ELVTVQAEMDVQVT-SEAQDIALNIVYEDEHILVINKPADLVVHPGAGNPSGTVLNALLN 124
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
P + VPRAGIVHRLDK+++GLMVVAK+I + HLV+QL+ + R+Y A+ G
Sbjct: 125 HCPEIDKVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVDQLQRREMSREYEAVALGTMVA 184
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTH 185
G+++A I R+ R M V + KPA+T++ +I K + + +R L+TGRTH
Sbjct: 185 GGIVDAPIGRHATKRTHMAVRE--MGKPAVTHFR-----VIEKFRAYTHLRLKLETGRTH 237
Query: 186 QIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLK 234
QIRVHM + H ++GD +YG K S+ I F RQALHA +L L HP+
Sbjct: 238 QIRVHMAHIKHPLLGDQVYGGRPRLPKGASEEFIAALRGFQRQALHAAQLSLFHPETEEW 297
Query: 235 LKWRINLPDDISKLI 249
+ W+ LP D+ L+
Sbjct: 298 MTWKAPLPQDMQDLL 312
>gi|261820451|ref|YP_003258557.1| 23S rRNA pseudouridine synthase D [Pectobacterium wasabiae WPP163]
gi|261604464|gb|ACX86950.1| pseudouridine synthase, RluA family [Pectobacterium wasabiae
WPP163]
gi|385870628|gb|AFI89148.1| Pseudouridine synthase [Pectobacterium sp. SCC3193]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NKS LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDQDILVINKSRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVEQPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L HP ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASDDFIETLRGFDRQALHATMLRFYHPITGIQMEWHAALPQDMVDLI 309
>gi|45440505|ref|NP_992044.1| 23S rRNA pseudouridine synthase D [Yersinia pestis biovar Microtus
str. 91001]
gi|51595196|ref|YP_069387.1| 23S rRNA pseudouridine synthase D [Yersinia pseudotuberculosis IP
32953]
gi|145600172|ref|YP_001164248.1| 23S rRNA pseudouridine synthase D [Yersinia pestis Pestoides F]
gi|162420770|ref|YP_001607807.1| 23S rRNA pseudouridine synthase D [Yersinia pestis Angola]
gi|170025566|ref|YP_001722071.1| 23S rRNA pseudouridine synthase D [Yersinia pseudotuberculosis
YPIII]
gi|186894214|ref|YP_001871326.1| 23S rRNA pseudouridine synthase D [Yersinia pseudotuberculosis
PB1/+]
gi|229896561|ref|ZP_04511728.1| 23S rRNA pseudouridine synthase [Yersinia pestis Pestoides A]
gi|45435362|gb|AAS60921.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Microtus str. 91001]
gi|51588478|emb|CAH20086.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Yersinia pseudotuberculosis IP 32953]
gi|145211868|gb|ABP41275.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
Pestoides F]
gi|162353585|gb|ABX87533.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
Angola]
gi|169752100|gb|ACA69618.1| pseudouridine synthase, RluA family [Yersinia pseudotuberculosis
YPIII]
gi|186697240|gb|ACC87869.1| pseudouridine synthase, RluA family [Yersinia pseudotuberculosis
PB1/+]
gi|229700339|gb|EEO88371.1| 23S rRNA pseudouridine synthase [Yersinia pestis Pestoides A]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPKGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|205353701|ref|YP_002227502.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375124557|ref|ZP_09769721.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|445130107|ref|ZP_21381154.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|205273482|emb|CAR38459.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628807|gb|EGE35150.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|444852498|gb|ELX77577.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 326
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPIGRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|422348336|ref|ZP_16429229.1| RluA family pseudouridine synthase [Sutterella wadsworthensis
2_1_59BFAA]
gi|404659418|gb|EKB32269.1| RluA family pseudouridine synthase [Sutterella wadsworthensis
2_1_59BFAA]
Length = 358
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 152/264 (57%), Gaps = 11/264 (4%)
Query: 2 IISGYELIIIK-PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+ G E+ +++ P + L T ++ ++ D++YED+ I+++NK AGLVVHP GN GTL
Sbjct: 80 VTEGDEISLLEEPHLDEALAFTPEEDVEFDVVYEDDAIVVVNKPAGLVVHPGAGNPCGTL 139
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL YP L VPRAGIVHRLD++++GLMVVA+++ + +LV QL+ V+R+Y A
Sbjct: 140 LNGLLWRYPELREVPRAGIVHRLDRDTTGLMVVARTLAAQTNLVRQLQERTVKREYWAFT 199
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTV---SKNFNAKPALTYYERLATGIINKKHISLIRC 177
G + ++ I R+P +R + S AKPA T + I +S + C
Sbjct: 200 LGSAAPDFVVETPIGRDPRSRTRFKCFPGSTGVRAKPARTRARCVGWSSIEGLPVSWVAC 259
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLY-GK------KYSKSLIFNRQALHAYKLGLIHPK 230
L TGRTHQIRVH+ ++GD +Y G+ K L F+RQALHA +LGL HP
Sbjct: 260 RLDTGRTHQIRVHLTSEDLPLIGDQVYRGRAPGLTVKVENELDFHRQALHASRLGLDHPV 319
Query: 231 NNLKLKWRINLPDDISKLITFSGI 254
++W + DD+ L+ G
Sbjct: 320 TGEYMEWFVPPEDDMIDLMDELGF 343
>gi|66043991|ref|YP_233832.1| pseudouridine synthase RluD [Pseudomonas syringae pv. syringae
B728a]
gi|63254698|gb|AAY35794.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. syringae B728a]
Length = 320
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLSL 310
>gi|407700659|ref|YP_006825446.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Black Sea 11']
gi|407249806|gb|AFT78991.1| ribosomal large subunit pseudouridine synthase D [Alteromonas
macleodii str. 'Black Sea 11']
Length = 327
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 155/255 (60%), Gaps = 20/255 (7%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
EL+ ++ + + + +E + I L+I+YED I+++NK A LVVHP GN SGT+ + LL
Sbjct: 66 ELVTVQAEMDVQVT-SEAQDIALNIVYEDEHILVINKPADLVVHPGAGNPSGTVLNALLN 124
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
P + VPRAGIVHRLDK+++GLMVVAK+I + HLV+QL+ + R+Y A+ G
Sbjct: 125 HCPDIDKVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVDQLQRREMSREYEAIALGTMVA 184
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTH 185
G+++A I R+ R M V + KPA+T++ +I K + + +R L+TGRTH
Sbjct: 185 GGIVDAPIGRHATKRTHMAVRE--MGKPAVTHFR-----VIEKFRAYTHLRLKLETGRTH 237
Query: 186 QIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLK 234
QIRVHM + H ++GD +YG K S+ I F RQALHA +L L HP+
Sbjct: 238 QIRVHMAHIKHPLLGDQVYGGRPRLPKGASEEFIAALRGFQRQALHAAQLSLFHPETEEW 297
Query: 235 LKWRINLPDDISKLI 249
+ W+ LP D+ L+
Sbjct: 298 MTWKAPLPQDMQDLL 312
>gi|338813367|ref|ZP_08625496.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
gi|337274726|gb|EGO63234.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
Length = 308
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 159/255 (62%), Gaps = 18/255 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ SG + +I PK E+ I LDI+YED+ +I++NK G+VVHPA GN GTL
Sbjct: 58 VQSGDTIEVIVPKTRSCAILPEE--IPLDILYEDDSVIVINKPRGMVVHPAAGNFQGTLV 115
Query: 62 DNLLEIYPFL--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
+ LL+ L IN V R GIVHRLDK++SG+MV AK+ +++ L +Q++ I RKY A
Sbjct: 116 NALLDHCRDLSGINGVVRPGIVHRLDKDTSGVMVAAKNDTAHLDLADQIQKRIAGRKYFA 175
Query: 119 MVWG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISL 174
+VWG I + G++NA I R+P +R KM V N+KPA+T++ ER ++ +L
Sbjct: 176 VVWGNIKEEQGVVNAPIGRHPADRKKMAVVP-INSKPAVTHFRILERF-------RNFTL 227
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLK 234
I C L+TGRTHQIRVHM ++G+ +VGD YG K + I QALH+ +L +HP
Sbjct: 228 IECKLETGRTHQIRVHMAYIGYPVVGDPKYGPKQNPFAIAG-QALHSAELTFVHPMTKET 286
Query: 235 LKWRINLPDDISKLI 249
L + LP D++ +I
Sbjct: 287 LHFTAPLPQDMTVII 301
>gi|56964104|ref|YP_175835.1| pseudouridine synthase [Bacillus clausii KSM-K16]
gi|56910347|dbj|BAD64874.1| pseudouridine synthase [Bacillus clausii KSM-K16]
Length = 302
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 145/227 (63%), Gaps = 11/227 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I LD++YED+++I++NK GLVVHPA G+ SGTL + LL L + R GIVHR+
Sbjct: 76 IPLDVVYEDSDVIVVNKPRGLVVHPAPGHESGTLVNALLFHCKDLSGINGEIRPGIVHRI 135
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++ AK ++ HL QLK +R+Y A+V G IP G I+A I R+P +R
Sbjct: 136 DKDTSGLIMAAKHDAAHEHLAAQLKAKTTERRYKAIVHGVIPHAKGTIDAPIGRDPKDRQ 195
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V+ + N++PA+T++ T K S I C L+TGRTHQIRVH ++GH + GD
Sbjct: 196 KMAVT-HVNSRPAVTHFSLEETF----KQYSYISCELETGRTHQIRVHFNYIGHPLAGDP 250
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K K+L N QALHA LG HP+ +L++ LP ++ KL+
Sbjct: 251 KYGPK--KTLPINGQALHAETLGFTHPRTGERLRFSAPLPAEMEKLL 295
>gi|296104263|ref|YP_003614409.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058722|gb|ADF63460.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 282
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 208 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPVSGIQMEWHAPIPQDMVELI 265
>gi|71735208|ref|YP_273032.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257481618|ref|ZP_05635659.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|289626965|ref|ZP_06459919.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289651379|ref|ZP_06482722.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
aesculi str. 2250]
gi|416014080|ref|ZP_11562000.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
glycinea str. B076]
gi|416024300|ref|ZP_11568432.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422584374|ref|ZP_16659484.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422607939|ref|ZP_16679931.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. mori str. 301020]
gi|422621049|ref|ZP_16689717.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. japonica str. M301072]
gi|422641870|ref|ZP_16705291.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae Cit 7]
gi|422674215|ref|ZP_16733570.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. aceris str. M302273]
gi|422679421|ref|ZP_16737695.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|440724232|ref|ZP_20904562.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae BRIP34876]
gi|440728948|ref|ZP_20909147.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae BRIP34881]
gi|440745960|ref|ZP_20925247.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae BRIP39023]
gi|443641448|ref|ZP_21125298.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. syringae B64]
gi|71555761|gb|AAZ34972.1| Ribosomal large subunit pseudouridine synthase D(Pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298160063|gb|EFI01095.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320326249|gb|EFW82303.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330673|gb|EFW86650.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330869191|gb|EGH03900.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330891573|gb|EGH24234.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. mori str. 301020]
gi|330901397|gb|EGH32816.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. japonica str. M301072]
gi|330954255|gb|EGH54515.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae Cit 7]
gi|330971944|gb|EGH72010.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. aceris str. M302273]
gi|331008769|gb|EGH88825.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|440358169|gb|ELP95559.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae BRIP34876]
gi|440360349|gb|ELP97627.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae BRIP34881]
gi|440371781|gb|ELQ08613.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae BRIP39023]
gi|443281465|gb|ELS40470.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. syringae B64]
Length = 320
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLSL 310
>gi|220931776|ref|YP_002508684.1| ribosomal large subunit pseudouridine synthase D [Halothermothrix
orenii H 168]
gi|219993086|gb|ACL69689.1| ribosomal large subunit pseudouridine synthase D [Halothermothrix
orenii H 168]
Length = 308
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 158/245 (64%), Gaps = 13/245 (5%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+II P ++ + E + LDIIYED +I++LNK+AGLVVHPA GN TL + L+
Sbjct: 65 LIIPPPEDSGIKPVE---MDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYC 121
Query: 69 PFLINVP---RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IP 124
L + R GIVHRLDK++SG+MV+AK+ S+ LV Q K ++ Y ++ G +P
Sbjct: 122 DNLSTISGVNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELP 181
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G I+A I R+PH+R KM V++ N+K A+TY++ L + H S + LKTGRT
Sbjct: 182 YKEGKIDAPIGRDPHDRKKMAVTRK-NSKKAVTYFKVLE---FFRDH-SYVEVELKTGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVH ++G +VGD++YGKK ++ L RQ LHAY+LG HP+N+ ++++ +LPDD
Sbjct: 237 HQIRVHFSYMGFPVVGDSIYGKKRNR-LQATRQLLHAYRLGFYHPRNDKWVEYKASLPDD 295
Query: 245 ISKLI 249
K +
Sbjct: 296 FKKAL 300
>gi|302185255|ref|ZP_07261928.1| ribosomal large subunit pseudouridine synthase D(pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
syringae 642]
Length = 320
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLSL 310
>gi|261493667|ref|ZP_05990186.1| 23S rRNA pseudouridine synthase D [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261494334|ref|ZP_05990828.1| 23S rRNA pseudouridine synthase D [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|452745563|ref|ZP_21945397.1| 23S rRNA pseudouridine synthase D [Mannheimia haemolytica serotype
6 str. H23]
gi|261309983|gb|EEY11192.1| 23S rRNA pseudouridine synthase D [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261310667|gb|EEY11851.1| 23S rRNA pseudouridine synthase D [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|452086438|gb|EME02827.1| 23S rRNA pseudouridine synthase D [Mannheimia haemolytica serotype
6 str. H23]
Length = 325
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S S + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASDSFLSVLRGFQRQALHATMLRLEHPITGEMMEWHAPLPDDFIEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|429212830|ref|ZP_19203995.1| pseudouridine synthase [Pseudomonas sp. M1]
gi|428157312|gb|EKX03860.1| pseudouridine synthase [Pseudomonas sp. M1]
Length = 319
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED I++++K AGLVVHPA G+ GTL + LL P L NVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLHHVPHLANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ +LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 141 TTGLMVVAKTLEAHTNLVAQLQARSVSRIYEAIVVGVIVAGGKIDAPISRHGVMRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y R+ + H R L+TGRTHQIRVHM +G +VGD +YG
Sbjct: 201 VP--TGKQAISHY-RVLERFRSHTH---TRVKLETGRTHQIRVHMSHIGFPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +L+ F RQALHA L L HP ++KW LPDD + L++
Sbjct: 255 RFRIPPGASPTLVESLRDFPRQALHARFLELDHPATGERMKWESPLPDDFTWLLSL 310
>gi|78048898|ref|YP_365073.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325929044|ref|ZP_08190199.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
perforans 91-118]
gi|346726005|ref|YP_004852674.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. citrumelo F1]
gi|78037328|emb|CAJ25073.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325540577|gb|EGD12164.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
perforans 91-118]
gi|346650752|gb|AEO43376.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 331
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN TL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDQTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G +NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTVNAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRSFKRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMT 316
>gi|395784617|ref|ZP_10464444.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395422191|gb|EJF88402.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 341
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 165/275 (60%), Gaps = 30/275 (10%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+II P KN L E + I LDI++ED+ II++NK AGLVVHP GN +GTL + L+
Sbjct: 64 LIIPPLKNIHL---EGEAIVLDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIHHC 120
Query: 69 PFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMV 120
+ ++ V R GIVHRLDKN+SG+MVVAK+ ++ L Q H + R+Y A++
Sbjct: 121 GYSLSGIGGVKRPGIVHRLDKNTSGVMVVAKNDFAHKSLSAQFSDHGRTCALDRRYHALI 180
Query: 121 WGIPKLN-GMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISL 174
W P+ N G I+ ++ R+PHNRIK TV +N +A+ A+T++ E+ T + + SL
Sbjct: 181 WNAPRRNIGTIDVSLGRSPHNRIKQTVVRHQNVHARRAITHFSLLEKYKTCVDAEPFASL 240
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS----------KSLI--FNRQALHAY 222
+ C+L+TGRTHQIRVHM +GH +VGD +YG + K+ I FNRQALHA
Sbjct: 241 LECHLETGRTHQIRVHMAHIGHPLVGDTVYGNAFKTKANTLNSTIKNAIDQFNRQALHAV 300
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLIT-FSGIKW 256
L HP + + P D+++LI F + W
Sbjct: 301 SLTFEHPAKGEIMSFSSPPPQDMAELINHFKKLNW 335
>gi|289674871|ref|ZP_06495761.1| pseudouridine synthase, RluD, partial [Pseudomonas syringae pv.
syringae FF5]
Length = 256
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 17 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 76
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 77 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 136
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 137 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 190
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 191 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLSL 246
>gi|401764809|ref|YP_006579816.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400176343|gb|AFP71192.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 326
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W LP D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPLPQDMVELI 309
>gi|398801705|ref|ZP_10560943.1| pseudouridine synthase, RluA family [Pantoea sp. GM01]
gi|398091389|gb|EJL81834.1| pseudouridine synthase, RluA family [Pantoea sp. GM01]
Length = 326
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 154/265 (58%), Gaps = 30/265 (11%)
Query: 9 IIIKPKKNFF-------------LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
II KPK+ F + E + I L+I+YED++I+++NK GLVVHP GN
Sbjct: 51 IIDKPKEKVFGGEHVAIDAEIEEEQRWEAQNIPLNIVYEDDDILVINKPRGLVVHPGAGN 110
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL YP +++VPRAGIVHRLDK+++GLMVVAK++ + HLV L++ + R+
Sbjct: 111 PDGTVLNALLYHYPPIVDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVETLQLREITRE 170
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
Y A+ G G ++ + R+ R M V KPA T+Y R+ + H L
Sbjct: 171 YEAVAIGTMTAGGTVDQPMARHSTKRTHMAVHP--MGKPATTHY-RIMEHF--RAHTRL- 224
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKL 224
R L+TGRTHQIRVHM + H +VGD LYG K S++ I F+RQALHA L
Sbjct: 225 RLRLETGRTHQIRVHMAHIDHPLVGDPLYGGRPRPPKGASEAFINTLRGFDRQALHATML 284
Query: 225 GLIHPKNNLKLKWRINLPDDISKLI 249
L HP ++++W LP D+ LI
Sbjct: 285 RLYHPITGIEMEWHAPLPQDMVDLI 309
>gi|423097382|ref|ZP_17085178.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens Q2-87]
gi|397887200|gb|EJL03683.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens Q2-87]
Length = 320
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP ++ W LPDD L+T
Sbjct: 255 RFRIPPAASITMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTL 310
>gi|334344653|ref|YP_004553205.1| RluA family pseudouridine synthase [Sphingobium chlorophenolicum
L-1]
gi|334101275|gb|AEG48699.1| pseudouridine synthase, RluA family [Sphingobium chlorophenolicum
L-1]
Length = 316
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 146/235 (62%), Gaps = 15/235 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L I++ED ++I+++K AGLVVHPA GNL GTL + LL ++ V R GIVHR
Sbjct: 82 IPLAIVHEDADLIVIDKPAGLVVHPAAGNLDGTLVNALLHHCQGQLSGIGGVARPGIVHR 141
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNR 141
+DK++SGL+VVAKS +++ L Q H + R Y A+V+G P+ G +++ I R+ +R
Sbjct: 142 IDKDTSGLLVVAKSDRAHEGLAQQFAAHSIDRLYAAIVYGAPQPAAGTVDSWIGRSDADR 201
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V + K A+T+Y L + +L+ C L+TGRTHQ+RVHM LGH ++GD
Sbjct: 202 KKMAVCREGRGKHAVTHYRTLE----KLRGAALVECRLETGRTHQVRVHMTQLGHPLIGD 257
Query: 202 NLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+YGK+ ++L F RQALHA +LG IHP L + LP D+ +L++
Sbjct: 258 PVYGKERKGFKSILETLGFKRQALHAKRLGFIHPVTGEALSFDSQLPADMQELLS 312
>gi|424065891|ref|ZP_17803364.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|424070604|ref|ZP_17808038.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|408000302|gb|EKG40663.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|408002909|gb|EKG43135.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 306
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 67 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 126
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 127 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 186
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 187 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 240
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 241 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLSL 296
>gi|300722272|ref|YP_003711556.1| pseudouridine synthase [Xenorhabdus nematophila ATCC 19061]
gi|297628773|emb|CBJ89351.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Xenorhabdus nematophila ATCC 19061]
Length = 325
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I+L+++YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIELNVVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYRYPKIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G GM+ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAIALGCMTAGGMVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y L + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAITHYRVLEH---FRAHTRL-RLRLETGRTHQIRVHMAHIKHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S F+RQALHA L L HP ++++W LPDD+ +LI
Sbjct: 252 LYGGRPRPLKGASDEFREVMRNFDRQALHATMLRLYHPITGIEMEWHAPLPDDMVRLI 309
>gi|418514453|ref|ZP_13080658.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366079127|gb|EHN43116.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
Length = 326
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|222157293|ref|YP_002557432.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
LF82]
gi|331684250|ref|ZP_08384842.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli H299]
gi|387617907|ref|YP_006120929.1| 23S rRNA pseudouridine synthase D [Escherichia coli O83:H1 str. NRG
857C]
gi|417140475|ref|ZP_11983725.1| pseudouridine synthase, RluA family [Escherichia coli 97.0259]
gi|432617788|ref|ZP_19853899.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE75]
gi|450191585|ref|ZP_21891284.1| 23S rRNA pseudouridine synthase D [Escherichia coli SEPT362]
gi|222034298|emb|CAP77039.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
LF82]
gi|312947168|gb|ADR27995.1| 23S rRNA pseudouridine synthase D [Escherichia coli O83:H1 str. NRG
857C]
gi|331077865|gb|EGI49071.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli H299]
gi|386156598|gb|EIH12943.1| pseudouridine synthase, RluA family [Escherichia coli 97.0259]
gi|431152926|gb|ELE53846.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE75]
gi|449319229|gb|EMD09283.1| 23S rRNA pseudouridine synthase D [Escherichia coli SEPT362]
Length = 326
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P+D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPEDMVELI 309
>gi|293392744|ref|ZP_06637062.1| ribosomal large subunit pseudouridine synthase D [Serratia
odorifera DSM 4582]
gi|291424603|gb|EFE97814.1| ribosomal large subunit pseudouridine synthase D [Serratia
odorifera DSM 4582]
Length = 325
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP +I+VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDSDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPEIIDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGTMTAGGTVEEPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFITTLRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLI 309
>gi|422666966|ref|ZP_16726832.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330977498|gb|EGH77444.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 320
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPTTGKRISWESPLPDDFVWLLSL 310
>gi|389681902|ref|ZP_10173246.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
chlororaphis O6]
gi|388554437|gb|EIM17686.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
chlororaphis O6]
Length = 320
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAASPTMVESLKHFPRQALHARFLELDHPTTGERMSWESPLPEDFVWLLTL 310
>gi|354724737|ref|ZP_09038952.1| 23S rRNA pseudouridine synthase D [Enterobacter mori LMG 25706]
Length = 326
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVELI 309
>gi|419155003|ref|ZP_13699563.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC6C]
gi|377995521|gb|EHV58637.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC6C]
Length = 267
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 19 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 78
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 79 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 138
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 139 HMAVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 192
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 193 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 250
>gi|388469528|ref|ZP_10143737.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
synxantha BG33R]
gi|388006225|gb|EIK67491.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
synxantha BG33R]
Length = 320
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP + ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASQTMVESLKSFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSL 310
>gi|146338456|ref|YP_001203504.1| pseudouridine synthase [Bradyrhizobium sp. ORS 278]
gi|146191262|emb|CAL75267.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 278]
Length = 384
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 161/270 (59%), Gaps = 27/270 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ +G + I P+ + + + I L IIYED++II+++K +GLVVHPA G+ +GTL
Sbjct: 111 VTTGDTITIDVPEA--VAPEPQAEAIPLQIIYEDDDIIVIDKPSGLVVHPAAGHETGTLV 168
Query: 62 DNLLEIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ L+ ++ V R GIVHRLDK+++GLMVVAK+ ++ L Q H ++
Sbjct: 169 NALIAHCGASLSGIGGVKRPGIVHRLDKDTTGLMVVAKNDMAHASLSAQFADHGRTGAME 228
Query: 114 RKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYE--RLATGIINKK 170
R YLA WG+P + +G INAAI R+PH R KM V + A+T+YE TG K
Sbjct: 229 RGYLAFAWGVPHRPHGTINAAIDRHPHARDKMAV--RAKGREAITHYEVQESFTGRDGKP 286
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FNRQA 218
SLI C+L+TGRTHQIRVH+ LGH ++GD +YG + +++ + RQA
Sbjct: 287 VASLIACHLETGRTHQIRVHLAHLGHPLLGDAVYGPHFKTKANQLSERARAALDSLGRQA 346
Query: 219 LHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
LHAY L + HP+ ++W LP+D+S L
Sbjct: 347 LHAYLLVIEHPRTGDIMRWESELPEDLSLL 376
>gi|452964597|gb|EME69634.1| pseudouridylate synthase, 23S RNA-specific [Magnetospirillum sp.
SO-1]
Length = 323
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 152/265 (57%), Gaps = 27/265 (10%)
Query: 11 IKPKKNFFLN-------KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
+KP + F + + E + I L ++YED ++I+++K AG+VVHPA GN TL +
Sbjct: 58 VKPGQCFVVEVPPDAPAEPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNA 117
Query: 64 LL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
LL E + V R GIVHR+DK++SGL+V AK+ ++ L Q H ++R Y A+
Sbjct: 118 LLAHCGESLAGIGGVRRPGIVHRIDKDTSGLLVAAKTDAAHRGLAAQFAAHTLERAYWAL 177
Query: 120 VWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
VWG P G I I RNP++R KM V ++ KPALT Y L + +SL+ C
Sbjct: 178 VWGTPSPRQGEIEGNIGRNPNDRKKMAVVRS-GGKPALTRYRVLKS--FAGGAVSLVECR 234
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGK-KYSKSLI-----------FNRQALHAYKLGL 226
L TGRTHQIRVHM GH ++GD +YG+ + S+ ++ F RQALHAY LG
Sbjct: 235 LATGRTHQIRVHMTSQGHPLIGDPVYGRIRSSRRVVLPPEVRETLGGFPRQALHAYLLGF 294
Query: 227 IHPKNNLKLKWRINLPDDISKLITF 251
HP +++ +P DI+ LI F
Sbjct: 295 SHPTKGYDIRFESRMPADINALIQF 319
>gi|387891998|ref|YP_006322295.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens A506]
gi|423689868|ref|ZP_17664388.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens SS101]
gi|387163214|gb|AFJ58413.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens A506]
gi|387998699|gb|EIK60028.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens SS101]
Length = 320
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP + ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASQTMVESLKTFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSL 310
>gi|121593575|ref|YP_985471.1| ribosomal large subunit pseudouridine synthase D [Acidovorax sp.
JS42]
gi|120605655|gb|ABM41395.1| ribosomal large subunit pseudouridine synthase D [Acidovorax sp.
JS42]
Length = 334
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 152/252 (60%), Gaps = 12/252 (4%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + + E+ LD++YED I++++K AGLVVHPA GN SGTL + LL
Sbjct: 88 VEMRPTQQSQAFRPEQ--WPLDVVYEDEHILVIHKPAGLVVHPAPGNWSGTLLNALLGRD 145
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG--IPKL 126
+ VPRAGIVHRLDK++SGLMVVA+S + LV + V R+Y+A+ WG
Sbjct: 146 AQAMQVPRAGIVHRLDKDTSGLMVVARSRSAMDALVRMIAAREVSRQYVALGWGGWTGAA 205
Query: 127 NGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+ ++A I R+P NR++M V K A T ++ I + + L+RC L TGRT
Sbjct: 206 HRSVHAPIGRDPRNRLRMAVVDLAQHPGKEARTDFDL----IDANEEVCLVRCTLHTGRT 261
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVHM + H +V D LYG + + +RQALHA++L +HP L++ LP+D
Sbjct: 262 HQIRVHMASIRHPLVADALYGGALAGPM--HRQALHAFRLAFVHPVTGAALEFHAPLPED 319
Query: 245 ISKLITFSGIKW 256
+++ + F G+++
Sbjct: 320 MAQALDFWGLRY 331
>gi|365888371|ref|ZP_09427141.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3809]
gi|365335954|emb|CCD99672.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3809]
Length = 331
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 153/245 (62%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI+YED++II+++K +GLVVHPA G+ SGTL + L+ ++ V R GIVHR
Sbjct: 81 IPLDIVYEDDDIIVIDKPSGLVVHPAAGHESGTLVNALIAHCGASLSGIGGVRRPGIVHR 140
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMVVAK+ ++ L Q H ++R YLA WG+P + +G +NA I R+
Sbjct: 141 LDKDTTGLMVVAKNDHAHASLSAQFADHGRTGAMERGYLAFAWGLPHRPHGTVNAPIDRH 200
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PH R KM V + A+T+YE + + G K SLI C+L+TGRTHQIRVH+ LG
Sbjct: 201 PHARDKMAVRPR--GREAITHYEVMESFSGRDGKPVASLIACHLETGRTHQIRVHLAHLG 258
Query: 196 HGIVGDNLYGKKY----------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + +++ + RQALHAY L + HP+ L+W LP+
Sbjct: 259 HPLMGDAVYGPHFKTKANQLAPGARAALESLGRQALHAYLLVIEHPRTGDILRWESELPE 318
Query: 244 DISKL 248
D+S+L
Sbjct: 319 DLSRL 323
>gi|22124820|ref|NP_668243.1| 23S rRNA pseudouridine synthase D [Yersinia pestis KIM10+]
gi|108808759|ref|YP_652675.1| 23S rRNA pseudouridine synthase D [Yersinia pestis Antiqua]
gi|108810984|ref|YP_646751.1| 23S rRNA pseudouridine synthase D [Yersinia pestis Nepal516]
gi|153997673|ref|ZP_02022773.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
CA88-4125]
gi|165926534|ref|ZP_02222366.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165936735|ref|ZP_02225302.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Orientalis str. IP275]
gi|166010204|ref|ZP_02231102.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166213045|ref|ZP_02239080.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167398582|ref|ZP_02304106.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167421637|ref|ZP_02313390.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167423313|ref|ZP_02315066.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167470273|ref|ZP_02334977.1| 23S rRNA pseudouridine synthase D [Yersinia pestis FV-1]
gi|218930302|ref|YP_002348177.1| 23S rRNA pseudouridine synthase D [Yersinia pestis CO92]
gi|229838893|ref|ZP_04459052.1| 23S rRNA pseudouridine synthase [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229899460|ref|ZP_04514603.1| 23S rRNA pseudouridine synthase [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901200|ref|ZP_04516323.1| 23S rRNA pseudouridine synthase [Yersinia pestis Nepal516]
gi|270489385|ref|ZP_06206459.1| pseudouridine synthase, RluA family [Yersinia pestis KIM D27]
gi|294504991|ref|YP_003569053.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
Z176003]
gi|384123460|ref|YP_005506080.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
D106004]
gi|384127316|ref|YP_005509930.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
D182038]
gi|384138883|ref|YP_005521585.1| 23S rRNA pseudouridine synthase D [Yersinia pestis A1122]
gi|384415965|ref|YP_005625327.1| 23S rRNA pseudouridine synthase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420548364|ref|ZP_15046178.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-01]
gi|420553710|ref|ZP_15050951.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-02]
gi|420559316|ref|ZP_15055823.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-03]
gi|420564704|ref|ZP_15060660.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-04]
gi|420569751|ref|ZP_15065244.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-05]
gi|420575408|ref|ZP_15070362.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-06]
gi|420580716|ref|ZP_15075189.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-07]
gi|420586078|ref|ZP_15080046.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-08]
gi|420591188|ref|ZP_15084640.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-09]
gi|420596574|ref|ZP_15089483.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-10]
gi|420602247|ref|ZP_15094529.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-11]
gi|420607666|ref|ZP_15099432.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-12]
gi|420613054|ref|ZP_15104263.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-13]
gi|420618440|ref|ZP_15108955.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-14]
gi|420623737|ref|ZP_15113732.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-15]
gi|420628811|ref|ZP_15118335.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-16]
gi|420633941|ref|ZP_15122932.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-19]
gi|420639154|ref|ZP_15127625.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-25]
gi|420644615|ref|ZP_15132609.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-29]
gi|420649907|ref|ZP_15137390.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-32]
gi|420655543|ref|ZP_15142454.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-34]
gi|420661055|ref|ZP_15147385.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-36]
gi|420666329|ref|ZP_15152135.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-42]
gi|420671194|ref|ZP_15156571.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-45]
gi|420676542|ref|ZP_15161432.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-46]
gi|420682172|ref|ZP_15166516.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-47]
gi|420687503|ref|ZP_15171254.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-48]
gi|420692728|ref|ZP_15175838.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-52]
gi|420698488|ref|ZP_15180905.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-53]
gi|420704345|ref|ZP_15185558.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-54]
gi|420709668|ref|ZP_15190295.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-55]
gi|420715145|ref|ZP_15195159.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-56]
gi|420720655|ref|ZP_15199882.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-58]
gi|420726121|ref|ZP_15204695.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-59]
gi|420731703|ref|ZP_15209711.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-60]
gi|420736723|ref|ZP_15214247.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-61]
gi|420742199|ref|ZP_15219168.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-63]
gi|420747929|ref|ZP_15224011.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-64]
gi|420753355|ref|ZP_15228858.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-65]
gi|420759155|ref|ZP_15233518.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-66]
gi|420764405|ref|ZP_15238136.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-71]
gi|420769639|ref|ZP_15242831.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-72]
gi|420774619|ref|ZP_15247341.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-76]
gi|420780233|ref|ZP_15252282.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-88]
gi|420785838|ref|ZP_15257177.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-89]
gi|420790973|ref|ZP_15261794.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-90]
gi|420796496|ref|ZP_15266759.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-91]
gi|420801563|ref|ZP_15271312.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-92]
gi|420806910|ref|ZP_15276155.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-93]
gi|420812281|ref|ZP_15280976.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-94]
gi|420817774|ref|ZP_15285943.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-95]
gi|420823095|ref|ZP_15290715.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-96]
gi|420828178|ref|ZP_15295284.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-98]
gi|420833862|ref|ZP_15300419.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-99]
gi|420838727|ref|ZP_15304814.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-100]
gi|420843922|ref|ZP_15309531.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-101]
gi|420849587|ref|ZP_15314614.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-102]
gi|420855256|ref|ZP_15319410.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-103]
gi|420860446|ref|ZP_15323985.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-113]
gi|421764777|ref|ZP_16201565.1| 23S rRNA pseudouridine synthase D [Yersinia pestis INS]
gi|34395805|sp|Q8ZBV7.1|RLUD_YERPE RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|21957646|gb|AAM84494.1|AE013693_10 suppressor of ftsH mutation [Yersinia pestis KIM10+]
gi|108774632|gb|ABG17151.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
Nepal516]
gi|108780672|gb|ABG14730.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
Antiqua]
gi|115348913|emb|CAL21870.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
CO92]
gi|149289310|gb|EDM39390.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
CA88-4125]
gi|165915384|gb|EDR33994.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Orientalis str. IP275]
gi|165921462|gb|EDR38659.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165991111|gb|EDR43412.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166205832|gb|EDR50312.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166960556|gb|EDR56577.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051086|gb|EDR62494.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167057483|gb|EDR67229.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|229681925|gb|EEO78018.1| 23S rRNA pseudouridine synthase [Yersinia pestis Nepal516]
gi|229687862|gb|EEO79935.1| 23S rRNA pseudouridine synthase [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695259|gb|EEO85306.1| 23S rRNA pseudouridine synthase [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|262363056|gb|ACY59777.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
D106004]
gi|262366980|gb|ACY63537.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
D182038]
gi|270337889|gb|EFA48666.1| pseudouridine synthase, RluA family [Yersinia pestis KIM D27]
gi|294355450|gb|ADE65791.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
Z176003]
gi|320016469|gb|ADW00041.1| 23S rRNA pseudouridine synthase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854012|gb|AEL72565.1| 23S rRNA pseudouridine synthase D [Yersinia pestis A1122]
gi|391423091|gb|EIQ85606.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-01]
gi|391423347|gb|EIQ85841.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-02]
gi|391423482|gb|EIQ85960.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-03]
gi|391438153|gb|EIQ98941.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-04]
gi|391439205|gb|EIQ99884.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-05]
gi|391443013|gb|EIR03371.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-06]
gi|391454929|gb|EIR14089.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-07]
gi|391455842|gb|EIR14926.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-08]
gi|391457775|gb|EIR16692.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-09]
gi|391470816|gb|EIR28447.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-10]
gi|391472070|gb|EIR29568.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-11]
gi|391473167|gb|EIR30568.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-12]
gi|391486892|gb|EIR42882.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-13]
gi|391488485|gb|EIR44328.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-15]
gi|391488511|gb|EIR44346.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-14]
gi|391502862|gb|EIR57116.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-16]
gi|391503069|gb|EIR57298.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-19]
gi|391508128|gb|EIR61899.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-25]
gi|391518868|gb|EIR71552.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-29]
gi|391520257|gb|EIR72821.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-34]
gi|391521249|gb|EIR73731.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-32]
gi|391533242|gb|EIR84538.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-36]
gi|391536319|gb|EIR87314.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-42]
gi|391538826|gb|EIR89600.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-45]
gi|391551801|gb|EIS01283.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-46]
gi|391551882|gb|EIS01354.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-47]
gi|391552365|gb|EIS01795.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-48]
gi|391566622|gb|EIS14591.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-52]
gi|391567814|gb|EIS15632.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-53]
gi|391572168|gb|EIS19429.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-54]
gi|391581135|gb|EIS27051.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-55]
gi|391583187|gb|EIS28872.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-56]
gi|391593777|gb|EIS38037.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-58]
gi|391596754|gb|EIS40652.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-60]
gi|391597878|gb|EIS41658.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-59]
gi|391611121|gb|EIS53329.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-61]
gi|391611659|gb|EIS53813.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-63]
gi|391614452|gb|EIS56317.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-64]
gi|391624358|gb|EIS65006.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-65]
gi|391628757|gb|EIS68778.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-66]
gi|391635026|gb|EIS74232.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-71]
gi|391637033|gb|EIS75998.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-72]
gi|391647160|gb|EIS84822.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-76]
gi|391650620|gb|EIS87884.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-88]
gi|391654971|gb|EIS91758.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-89]
gi|391659981|gb|EIS96193.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-90]
gi|391667562|gb|EIT02882.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-91]
gi|391677023|gb|EIT11370.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-93]
gi|391677726|gb|EIT12007.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-92]
gi|391678188|gb|EIT12427.1| pseudouridine synthase, RluA family protein [Yersinia pestis PY-94]
gi|391691047|gb|EIT24009.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-95]
gi|391694005|gb|EIT26707.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-96]
gi|391695492|gb|EIT28058.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-98]
gi|391707959|gb|EIT39257.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-99]
gi|391711124|gb|EIT42113.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-100]
gi|391712086|gb|EIT42997.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-101]
gi|391723964|gb|EIT53590.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-102]
gi|391724698|gb|EIT54251.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-103]
gi|391727376|gb|EIT56605.1| ribosomal large subunit pseudouridine synthase D [Yersinia pestis
PY-113]
gi|411174328|gb|EKS44361.1| 23S rRNA pseudouridine synthase D [Yersinia pestis INS]
Length = 325
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 144/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S S I F+RQALHA L L HP ++++W LP+D+ +LI
Sbjct: 256 RPRPPKGASDSFIAILRGFDRQALHATMLRLYHPIRGIQMEWHAALPEDMVELI 309
>gi|392980275|ref|YP_006478863.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326208|gb|AFM61161.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 326
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S + I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDAFISVLRKFDRQALHATMLRLYHPISGIQMEWHAPIPQDMVELI 309
>gi|312958894|ref|ZP_07773413.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens WH6]
gi|311286664|gb|EFQ65226.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens WH6]
Length = 320
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHIPDIINVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP + ++ W LPDD L++
Sbjct: 255 RFRIPPAASQTMVESLKTFPRQALHARFLELDHPTSGQRMSWESPLPDDFVWLLSL 310
>gi|384429049|ref|YP_005638409.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. raphani 756C]
gi|341938152|gb|AEL08291.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. raphani 756C]
Length = 314
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 148/238 (62%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+++++++K AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 71 IPLNVLYEDDQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKD 130
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G +A I R+P +R+KM V
Sbjct: 131 TSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADAPIDRHPRDRLKMAV 190
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 191 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 241
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP + ++ +P+D+ +L++
Sbjct: 242 YGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPVRASAPVPEDLQRLMS 299
>gi|170683711|ref|YP_001744779.1| 23S rRNA pseudouridine synthase D [Escherichia coli SMS-3-5]
gi|218701106|ref|YP_002408735.1| 23S rRNA pseudouridine synthase D [Escherichia coli IAI39]
gi|386625331|ref|YP_006145059.1| 23S rRNA pseudouridine synthase D [Escherichia coli O7:K1 str.
CE10]
gi|422832202|ref|ZP_16880318.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B093]
gi|422970254|ref|ZP_16974047.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TA124]
gi|432852577|ref|ZP_20082293.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE144]
gi|170521429|gb|ACB19607.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
SMS-3-5]
gi|218371092|emb|CAR18921.1| 23S rRNA pseudouridine synthase [Escherichia coli IAI39]
gi|349739068|gb|AEQ13774.1| 23S rRNA pseudouridine synthase D [Escherichia coli O7:K1 str.
CE10]
gi|371600632|gb|EHN89404.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TA124]
gi|371615392|gb|EHO03798.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B093]
gi|431399105|gb|ELG82517.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE144]
Length = 326
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|148244467|ref|YP_001219161.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Vesicomyosocius okutanii HA]
gi|146326294|dbj|BAF61437.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Vesicomyosocius okutanii HA]
Length = 314
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 145/232 (62%), Gaps = 17/232 (7%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+D++YED+EIII+NK GLV HP N +GTL + LL L N+ RAGIVHRLDKN+S
Sbjct: 80 IDVVYEDSEIIIVNKPVGLVTHPGASNWTGTLANALLHYDSSLANLDRAGIVHRLDKNTS 139
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK 148
GLMVVA+S + +L QL+ H + R+Y A+V+G G ++A I R+P +RIK V K
Sbjct: 140 GLMVVARSEYAQKYLTKQLQTHSISREYSAIVYGYMISGGSVDAPIGRDPKDRIKQAVVK 199
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG--- 205
+ K ALT+Y R+ + H+ I L+TGRTHQIRVH+ ++GH ++ D +YG
Sbjct: 200 --DGKYALTHY-RIIERFTHHTHVKAI---LETGRTHQIRVHLSFIGHPLIADPIYGGKV 253
Query: 206 ---KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
KK K L FNRQ LHA KL L HP + + W++ LP D+ L+
Sbjct: 254 YFPKKADKQLTKALKNFNRQTLHAKKLTLTHPISGELMSWKMPLPQDMQDLL 305
>gi|447915149|ref|YP_007395717.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas poae
RE*1-1-14]
gi|445199012|gb|AGE24221.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas poae
RE*1-1-14]
Length = 320
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 148/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P ++NVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++++ F RQALHA L L HP + ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASQTMVESLKTFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSL 310
>gi|417311069|ref|ZP_12097863.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
PCN033]
gi|338767305|gb|EGP22131.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
PCN033]
Length = 300
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P+D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPEDMVELI 283
>gi|91788477|ref|YP_549429.1| ribosomal large subunit pseudouridine synthase D [Polaromonas sp.
JS666]
gi|91697702|gb|ABE44531.1| ribosomal large subunit pseudouridine synthase D [Polaromonas sp.
JS666]
Length = 344
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/257 (42%), Positives = 152/257 (59%), Gaps = 15/257 (5%)
Query: 4 SGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+G ELII ++P K E + LDI++ED +++++K AGLVVHPA GN SGTL +
Sbjct: 91 AGDELIIELRPTPQSQAFKPE--AMALDIVFEDPYLLVIDKPAGLVVHPAPGNWSGTLLN 148
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P +PRAGIVHRLDK++SGLMVVA+ ++ LV+ + V R+Y+A+ G
Sbjct: 149 GLLARDPQASFLPRAGIVHRLDKDTSGLMVVARQRQAMDQLVSMIAARSVSREYIALAHG 208
Query: 123 I--PKLNGMINAAIMRNPHNRIKMT---VSKNFNAKPALTYYERLATGIINKKHISLIRC 177
++AAI R+P NR++M + KN KPALT L G ++H L++C
Sbjct: 209 AWQGARTREVSAAIGRDPRNRLRMAAVDLEKNAG-KPALTVISLLQNG---ERHC-LVKC 263
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKW 237
L TGRTHQIRVHM LGH ++ D LYG + L RQALHA +L HP +++
Sbjct: 264 KLHTGRTHQIRVHMALLGHPLISDGLYGGAVAAGL--ERQALHACRLAFEHPVTGAPMEF 321
Query: 238 RINLPDDISKLITFSGI 254
R P D+ I G+
Sbjct: 322 RSPPPPDLRAAIADVGL 338
>gi|417789783|ref|ZP_12437397.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii E899]
gi|449307189|ref|YP_007439545.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii SP291]
gi|333956140|gb|EGL73829.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii E899]
gi|449097222|gb|AGE85256.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii SP291]
Length = 326
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPISGILMEWHAPIPQDMVDLI 309
>gi|156932863|ref|YP_001436779.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii ATCC
BAA-894]
gi|156531117|gb|ABU75943.1| hypothetical protein ESA_00660 [Cronobacter sakazakii ATCC BAA-894]
Length = 326
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPISGILMEWHAPIPQDMVDLI 309
>gi|146312715|ref|YP_001177789.1| 23S rRNA pseudouridine synthase D [Enterobacter sp. 638]
gi|145319591|gb|ABP61738.1| ribosomal large subunit pseudouridine synthase D [Enterobacter sp.
638]
Length = 326
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L I+YED++I+++NK GLVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLTIVYEDDDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPPITDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMSHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPITGIEMEWHAPIPQDMVELI 309
>gi|254517173|ref|ZP_05129231.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium NOR5-3]
gi|219674678|gb|EED31046.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium NOR5-3]
Length = 282
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 145/236 (61%), Gaps = 16/236 (6%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L+I+YED E+++++K AGLVVHP GN GTL + LL P L +VPR GIVHRLD
Sbjct: 34 QSLPLNILYEDEELLVIDKPAGLVVHPGAGNHHGTLVNALLSHRPALESVPRGGIVHRLD 93
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGL+VVA ++ ++ LV QL+ VQR+Y A+V G+P G I AI R+P R +M
Sbjct: 94 KETSGLLVVAGTLNAHRSLVAQLQKKDVQREYFAIVRGVPSGGGRIETAIGRHPRQRTRM 153
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V N + KPA+T+Y R+A +S+ L+TGRTHQIRVHM G+ ++GD +Y
Sbjct: 154 AVVPN-SGKPAVTHY-RIAQRFAQYTALSV---QLETGRTHQIRVHMAHRGYPLLGDPVY 208
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G + S+ L F RQALHA +L IHP + + L DD+ L+
Sbjct: 209 GGRLQLPRACSERLAETLRGFRRQALHARRLSFIHPGSGDLCSFESPLADDLQGLL 264
>gi|425273747|ref|ZP_18665155.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW15901]
gi|425284291|ref|ZP_18675326.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW00353]
gi|408192676|gb|EKI18246.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW15901]
gi|408201194|gb|EKI26356.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW00353]
Length = 282
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 208 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 265
>gi|16130515|ref|NP_417085.1| 23S rRNA pseudouridine synthase; specific to U1911, U1915, and
U1917 [Escherichia coli str. K-12 substr. MG1655]
gi|157162070|ref|YP_001459388.1| 23S rRNA pseudouridine synthase D [Escherichia coli HS]
gi|170019127|ref|YP_001724081.1| 23S rRNA pseudouridine synthase D [Escherichia coli ATCC 8739]
gi|170082199|ref|YP_001731519.1| 23S rRNA pseudouridine synthase D [Escherichia coli str. K-12
substr. DH10B]
gi|188493998|ref|ZP_03001268.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
53638]
gi|194439337|ref|ZP_03071415.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
101-1]
gi|238901755|ref|YP_002927551.1| 23S rRNA pseudouridine synthase D [Escherichia coli BW2952]
gi|251785917|ref|YP_003000221.1| 23S rRNA pseudouridine synthase [Escherichia coli BL21(DE3)]
gi|253772510|ref|YP_003035341.1| 23S rRNA pseudouridine synthase D [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162565|ref|YP_003045673.1| 23S rRNA pseudouridine synthase D [Escherichia coli B str. REL606]
gi|254289326|ref|YP_003055074.1| 23S rRNA pseudouridine synthase [Escherichia coli BL21(DE3)]
gi|297516262|ref|ZP_06934648.1| 23S rRNA pseudouridine synthase D [Escherichia coli OP50]
gi|300905086|ref|ZP_07122893.1| pseudouridine synthase, RluA family [Escherichia coli MS 84-1]
gi|300930681|ref|ZP_07146065.1| pseudouridine synthase, RluA family [Escherichia coli MS 187-1]
gi|301305760|ref|ZP_07211847.1| pseudouridine synthase, RluA family [Escherichia coli MS 124-1]
gi|301644036|ref|ZP_07244054.1| pseudouridine synthase, RluA family [Escherichia coli MS 146-1]
gi|331643311|ref|ZP_08344442.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli H736]
gi|386281659|ref|ZP_10059319.1| ribosomal large subunit pseudouridine synthase D [Escherichia sp.
4_1_40B]
gi|386594641|ref|YP_006091041.1| RluA family pseudouridine synthase [Escherichia coli DH1]
gi|386615296|ref|YP_006134962.1| ribosomal large subunit pseudouridine synthase [Escherichia coli
UMNK88]
gi|386705855|ref|YP_006169702.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
P12b]
gi|387613240|ref|YP_006116356.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
ETEC H10407]
gi|387622290|ref|YP_006129918.1| 23S rRNA pseudouridine synthase D [Escherichia coli DH1]
gi|388478626|ref|YP_490818.1| 23S rRNA pseudouridine synthase [Escherichia coli str. K-12 substr.
W3110]
gi|404375938|ref|ZP_10981114.1| ribosomal large subunit pseudouridine synthase D [Escherichia sp.
1_1_43]
gi|415866946|ref|ZP_11539242.1| pseudouridine synthase, RluA family [Escherichia coli MS 85-1]
gi|417262163|ref|ZP_12049643.1| pseudouridine synthase, RluA family [Escherichia coli 2.3916]
gi|417272496|ref|ZP_12059845.1| pseudouridine synthase, RluA family [Escherichia coli 2.4168]
gi|417278150|ref|ZP_12065466.1| pseudouridine synthase, RluA family [Escherichia coli 3.2303]
gi|417614063|ref|ZP_12264520.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_EH250]
gi|417635571|ref|ZP_12285782.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_S1191]
gi|417640349|ref|ZP_12290489.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TX1999]
gi|417943984|ref|ZP_12587229.1| 23S rRNA pseudouridine synthase D [Escherichia coli XH140A]
gi|417978064|ref|ZP_12618838.1| 23S rRNA pseudouridine synthase D [Escherichia coli XH001]
gi|419143549|ref|ZP_13688286.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC6A]
gi|419160290|ref|ZP_13704794.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC6D]
gi|419171263|ref|ZP_13715149.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC7A]
gi|419175958|ref|ZP_13719774.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7B]
gi|419187346|ref|ZP_13730857.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7D]
gi|419192644|ref|ZP_13736096.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC7E]
gi|419813243|ref|ZP_14338096.1| 23S rRNA pseudouridine synthase D [Escherichia coli O32:H37 str.
P4]
gi|420386650|ref|ZP_14885998.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EPECa12]
gi|422767876|ref|ZP_16821602.1| RluA family protein pseudouridine synthase [Escherichia coli E1520]
gi|422771503|ref|ZP_16825193.1| RluA family protein pseudouridine synthase [Escherichia coli E482]
gi|422787847|ref|ZP_16840585.1| RluA family protein pseudouridine synthase [Escherichia coli H489]
gi|422792064|ref|ZP_16844766.1| RluA family protein pseudouridine synthase [Escherichia coli TA007]
gi|423704029|ref|ZP_17678454.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
H730]
gi|425120837|ref|ZP_18522530.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0569]
gi|425306332|ref|ZP_18696030.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
N1]
gi|427805773|ref|ZP_18972840.1| suppressor of ftsH mutation [Escherichia coli chi7122]
gi|427810269|ref|ZP_18977334.1| suppressor of ftsH mutation [Escherichia coli]
gi|432370816|ref|ZP_19613899.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE10]
gi|432418071|ref|ZP_19660669.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE44]
gi|432486373|ref|ZP_19728287.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE212]
gi|432527355|ref|ZP_19764445.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE233]
gi|432564881|ref|ZP_19801460.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE51]
gi|432576856|ref|ZP_19813311.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE56]
gi|432628216|ref|ZP_19864191.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE77]
gi|432637833|ref|ZP_19873701.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE81]
gi|432661803|ref|ZP_19897443.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE111]
gi|432671695|ref|ZP_19907223.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE119]
gi|432686417|ref|ZP_19921711.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE156]
gi|432687801|ref|ZP_19923083.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE161]
gi|432705371|ref|ZP_19940470.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE171]
gi|432876457|ref|ZP_20094375.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE154]
gi|432956175|ref|ZP_20147963.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE197]
gi|433049010|ref|ZP_20236355.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE120]
gi|433131134|ref|ZP_20316567.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE163]
gi|433135801|ref|ZP_20321141.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE166]
gi|433174496|ref|ZP_20359014.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE232]
gi|442590623|ref|ZP_21009384.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599577|ref|ZP_21017290.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443618649|ref|YP_007382505.1| 23S rRNA pseudouridine synthase D [Escherichia coli APEC O78]
gi|450247074|ref|ZP_21901088.1| 23S rRNA pseudouridine synthase D [Escherichia coli S17]
gi|2507541|sp|P33643.4|RLUD_ECOLI RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|1236631|gb|AAA92957.1| SfhB [Escherichia coli]
gi|1788946|gb|AAC75643.1| 23S rRNA pseudouridine(1911,1915,1917) synthase [Escherichia coli
str. K-12 substr. MG1655]
gi|85675474|dbj|BAA16479.2| 23S rRNA pseudouridine synthase [Escherichia coli str. K12 substr.
W3110]
gi|157067750|gb|ABV07005.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
HS]
gi|169754055|gb|ACA76754.1| pseudouridine synthase, RluA family [Escherichia coli ATCC 8739]
gi|169890034|gb|ACB03741.1| 23S rRNA pseudouridine synthase [Escherichia coli str. K-12 substr.
DH10B]
gi|188489197|gb|EDU64300.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
53638]
gi|194421699|gb|EDX37708.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
101-1]
gi|226839295|gb|EEH71316.1| ribosomal large subunit pseudouridine synthase D [Escherichia sp.
1_1_43]
gi|238859758|gb|ACR61756.1| 23S rRNA pseudouridine synthase [Escherichia coli BW2952]
gi|242378190|emb|CAQ32965.1| 23S rRNA pseudouridine synthase [Escherichia coli BL21(DE3)]
gi|253323554|gb|ACT28156.1| pseudouridine synthase, RluA family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974466|gb|ACT40137.1| 23S rRNA pseudouridine synthase [Escherichia coli B str. REL606]
gi|253978633|gb|ACT44303.1| 23S rRNA pseudouridine synthase [Escherichia coli BL21(DE3)]
gi|260448330|gb|ACX38752.1| pseudouridine synthase, RluA family [Escherichia coli DH1]
gi|300403013|gb|EFJ86551.1| pseudouridine synthase, RluA family [Escherichia coli MS 84-1]
gi|300461455|gb|EFK24948.1| pseudouridine synthase, RluA family [Escherichia coli MS 187-1]
gi|300839014|gb|EFK66774.1| pseudouridine synthase, RluA family [Escherichia coli MS 124-1]
gi|301077610|gb|EFK92416.1| pseudouridine synthase, RluA family [Escherichia coli MS 146-1]
gi|309702976|emb|CBJ02307.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
ETEC H10407]
gi|315137214|dbj|BAJ44373.1| 23S rRNA pseudouridine synthase D [Escherichia coli DH1]
gi|315253122|gb|EFU33090.1| pseudouridine synthase, RluA family [Escherichia coli MS 85-1]
gi|323935610|gb|EGB31930.1| RluA family protein pseudouridine synthase [Escherichia coli E1520]
gi|323941386|gb|EGB37570.1| RluA family protein pseudouridine synthase [Escherichia coli E482]
gi|323960546|gb|EGB56175.1| RluA family protein pseudouridine synthase [Escherichia coli H489]
gi|323971461|gb|EGB66697.1| RluA family protein pseudouridine synthase [Escherichia coli TA007]
gi|331036782|gb|EGI09006.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli H736]
gi|332344465|gb|AEE57799.1| ribosomal large subunit pseudouridine synthase [Escherichia coli
UMNK88]
gi|342364118|gb|EGU28220.1| 23S rRNA pseudouridine synthase D [Escherichia coli XH140A]
gi|344192239|gb|EGV46335.1| 23S rRNA pseudouridine synthase D [Escherichia coli XH001]
gi|345361097|gb|EGW93258.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_EH250]
gi|345386441|gb|EGX16274.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_S1191]
gi|345392750|gb|EGX22529.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TX1999]
gi|359332899|dbj|BAL39346.1| 23S rRNA pseudouridine synthase [Escherichia coli str. K-12 substr.
MDS42]
gi|377993353|gb|EHV56490.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC6A]
gi|378006525|gb|EHV69503.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC6D]
gi|378015307|gb|EHV78204.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC7A]
gi|378027629|gb|EHV90255.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7D]
gi|378031930|gb|EHV94512.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7B]
gi|378037997|gb|EHW00519.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC7E]
gi|383104023|gb|AFG41532.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
P12b]
gi|385153931|gb|EIF15954.1| 23S rRNA pseudouridine synthase D [Escherichia coli O32:H37 str.
P4]
gi|385707145|gb|EIG44177.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
H730]
gi|386121215|gb|EIG69832.1| ribosomal large subunit pseudouridine synthase D [Escherichia sp.
4_1_40B]
gi|386224213|gb|EII46556.1| pseudouridine synthase, RluA family [Escherichia coli 2.3916]
gi|386236196|gb|EII68172.1| pseudouridine synthase, RluA family [Escherichia coli 2.4168]
gi|386239118|gb|EII76052.1| pseudouridine synthase, RluA family [Escherichia coli 3.2303]
gi|391304573|gb|EIQ62382.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EPECa12]
gi|408227565|gb|EKI51148.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
N1]
gi|408568065|gb|EKK44104.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0569]
gi|412963955|emb|CCK47881.1| suppressor of ftsH mutation [Escherichia coli chi7122]
gi|412970448|emb|CCJ45094.1| suppressor of ftsH mutation [Escherichia coli]
gi|430883702|gb|ELC06676.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE10]
gi|430938176|gb|ELC58419.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE44]
gi|431015035|gb|ELD28594.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE212]
gi|431062623|gb|ELD71887.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE233]
gi|431092572|gb|ELD98263.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE51]
gi|431114092|gb|ELE17644.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE56]
gi|431162311|gb|ELE62761.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE77]
gi|431169932|gb|ELE70146.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE81]
gi|431198762|gb|ELE97545.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE111]
gi|431209977|gb|ELF08044.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE119]
gi|431220905|gb|ELF18234.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE156]
gi|431238053|gb|ELF32993.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE161]
gi|431242253|gb|ELF36674.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE171]
gi|431419498|gb|ELH01847.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE154]
gi|431466557|gb|ELH46576.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE197]
gi|431563645|gb|ELI36849.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE120]
gi|431645365|gb|ELJ12921.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE163]
gi|431655299|gb|ELJ22333.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE166]
gi|431690897|gb|ELJ56365.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE232]
gi|441609078|emb|CCP95297.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441651587|emb|CCQ02787.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443423157|gb|AGC88061.1| 23S rRNA pseudouridine synthase D [Escherichia coli APEC O78]
gi|449318508|gb|EMD08574.1| 23S rRNA pseudouridine synthase D [Escherichia coli S17]
Length = 326
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|407792051|ref|ZP_11139124.1| ribosomal large subunit pseudouridine synthase D [Gallaecimonas
xiamenensis 3-C-1]
gi|407198216|gb|EKE68255.1| ribosomal large subunit pseudouridine synthase D [Gallaecimonas
xiamenensis 3-C-1]
Length = 321
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 154/252 (61%), Gaps = 18/252 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I +K + + + + I LDI+YED+ I+++NK AGLVVHP GN GTL + L
Sbjct: 61 GIEAIDVKAEVEAD-ERFKAEAIDLDIVYEDDHILVINKGAGLVVHPGAGNADGTLLNAL 119
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + VPRAGIVHRLDK+++GLMVVAK++ + HLV +L+ + R+Y A+ G+
Sbjct: 120 LHHCPEIGVVPRAGIVHRLDKDTTGLMVVAKTLAAQTHLVEKLQARDITREYEALAIGLM 179
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++A I R+P R M V K + KPA+T+Y R+A + +R L++GRT
Sbjct: 180 TAGGSVDAPIGRHPTKRTHMAVVK--DGKPAVTHY-RVAEKFRLH---TRLRLRLESGRT 233
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKY---------SKSLI--FNRQALHAYKLGLIHPKNNL 233
HQIRVHM LGH +VGD LYG + ++ ++ F RQALHA KL L HP
Sbjct: 234 HQIRVHMAHLGHPLVGDPLYGGRSRLLKGADPDTQEILRQFPRQALHAAKLILEHPITGE 293
Query: 234 KLKWRINLPDDI 245
++ W +PDD+
Sbjct: 294 EMCWEAPIPDDM 305
>gi|395499144|ref|ZP_10430723.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
PAMC 25886]
gi|395795262|ref|ZP_10474571.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
Ag1]
gi|421142085|ref|ZP_15602061.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens BBc6R8]
gi|395340625|gb|EJF72457.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
Ag1]
gi|404506479|gb|EKA20473.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens BBc6R8]
Length = 320
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP + ++ W LPDD L++
Sbjct: 255 RFRIPPAASATMVDSLKTFPRQALHARFLELDHPTSGKRMSWESPLPDDFVWLLSL 310
>gi|49259508|pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine
Synthase Rlud From Escherichia Coli
gi|118138510|pdb|2IST|A Chain A, Crystal Structure Of Rlud From E. Coli
Length = 325
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 77 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 137 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 197 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 251 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 308
>gi|402698423|ref|ZP_10846402.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas fragi
A22]
Length = 320
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IPLDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMSHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP ++ W LPDD L+T
Sbjct: 255 RFRIPPAASVTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPDDFVWLLTL 310
>gi|374313939|ref|YP_005060368.1| ribosomal large subunit pseudouridine synthase D [Serratia
symbiotica str. 'Cinara cedri']
gi|363988165|gb|AEW44356.1| ribosomal large subunit pseudouridine synthase D [Serratia
symbiotica str. 'Cinara cedri']
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 150/240 (62%), Gaps = 17/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+IIYEDN+I++LNK LVVHP G +GT+ + LL YP + ++PRAGIVHR
Sbjct: 78 EPQDIALNIIYEDNDILVLNKPRNLVVHPGAGKPNGTVINALLHYYPEIADIPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I++ I LV L++H + R+Y A+V G G +N I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIRAQIQLVEALRVHDIIREYEAVVIGTMIAGGTVNEPITRHNTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V K A+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 YMAVRA--IGKSAVTHYRIMEHFRMHTR----LRLRLETGRTHQIRVHMSHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
LYG K S+ + FNRQALHA KL L HP ++++++W LP D+ LIT
Sbjct: 252 LYGSRSFSLKGLSEVCLSTLSGFNRQALHAIKLRLCHPISHIQMEWHAPLPQDMLDLITI 311
>gi|425278992|ref|ZP_18670228.1| pseudouridine synthase [Escherichia coli ARS4.2123]
gi|408200368|gb|EKI25550.1| pseudouridine synthase [Escherichia coli ARS4.2123]
Length = 282
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 208 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 265
>gi|333892369|ref|YP_004466244.1| ribosomal large subunit pseudouridine synthase D [Alteromonas sp.
SN2]
gi|332992387|gb|AEF02442.1| ribosomal large subunit pseudouridine synthase D [Alteromonas sp.
SN2]
Length = 327
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 146/240 (60%), Gaps = 19/240 (7%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
++ + I LDI+YED I+++NKSA LVVHP GN SGT+ + LL P + VPRAGIVH
Sbjct: 80 SQAQDIALDIVYEDEHILVINKSADLVVHPGAGNPSGTVLNALLNHVPDIDKVPRAGIVH 139
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLDK+++GLMVVAK++ + HLV+QL+ ++ R+Y A+ G G+++ I R+ R
Sbjct: 140 RLDKDTTGLMVVAKTLPAQTHLVDQLQTRVMSREYEAVAMGTMVAGGVVDEPIGRHATKR 199
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
M V + N KPA+T++ +I K + + +R L+TGRTHQIRVHM + H ++G
Sbjct: 200 THMAVRE--NGKPAVTHFR-----VIEKFRAYTHLRLKLETGRTHQIRVHMAHIKHPLLG 252
Query: 201 DNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D Y K S + F RQALHA +L L HP+ + W+ LP D+ L+
Sbjct: 253 DPTYSGRPRLPKGASDDFVNTLRGFQRQALHAAQLSLYHPETEEWMTWQAPLPQDMQDLL 312
>gi|300921138|ref|ZP_07137519.1| pseudouridine synthase, RluA family [Escherichia coli MS 115-1]
gi|300411911|gb|EFJ95221.1| pseudouridine synthase, RluA family [Escherichia coli MS 115-1]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPSKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|301024188|ref|ZP_07187895.1| pseudouridine synthase, RluA family [Escherichia coli MS 196-1]
gi|312973162|ref|ZP_07787335.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
1827-70]
gi|415778703|ref|ZP_11489697.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3431]
gi|418304089|ref|ZP_12915883.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
UMNF18]
gi|418957029|ref|ZP_13508954.1| pseudouridine synthase, RluA family [Escherichia coli J53]
gi|419149624|ref|ZP_13694276.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC6B]
gi|419181896|ref|ZP_13725508.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7C]
gi|425116072|ref|ZP_18517869.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0566]
gi|299880530|gb|EFI88741.1| pseudouridine synthase, RluA family [Escherichia coli MS 196-1]
gi|310333104|gb|EFQ00318.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
1827-70]
gi|315615335|gb|EFU95969.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3431]
gi|339416187|gb|AEJ57859.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
UMNF18]
gi|377991276|gb|EHV54427.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC6B]
gi|378022806|gb|EHV85489.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7C]
gi|384380823|gb|EIE38689.1| pseudouridine synthase, RluA family [Escherichia coli J53]
gi|408567360|gb|EKK43419.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0566]
Length = 300
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|229588326|ref|YP_002870445.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens SBW25]
gi|395650248|ref|ZP_10438098.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
gi|229360192|emb|CAY47049.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
fluorescens SBW25]
Length = 320
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP + ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASATMVESLKTFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSL 310
>gi|222110296|ref|YP_002552560.1| RluA family pseudouridine synthase [Acidovorax ebreus TPSY]
gi|221729740|gb|ACM32560.1| pseudouridine synthase, RluA family [Acidovorax ebreus TPSY]
Length = 334
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 152/252 (60%), Gaps = 12/252 (4%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ ++P + + E+ LD++YED I++++K AGLVVHPA GN SGTL + LL
Sbjct: 88 VEMRPTQQSQAFRPEQ--WPLDVVYEDEHILVIHKPAGLVVHPAPGNWSGTLLNALLGRD 145
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG--IPKL 126
+ VPRAGIVHRLDK++SGLMVVA+S + LV + V R+Y+A+ WG
Sbjct: 146 AQAMQVPRAGIVHRLDKDTSGLMVVARSRSAMDALVRMIAAREVSRQYVALGWGGWTGAA 205
Query: 127 NGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
+ ++A I R+P NR++M V K A T ++ I + + L+RC L TGRT
Sbjct: 206 HRSVHAPIGRDPRNRLRMAVVDLAQHPGKEARTDFDL----IDANEEVCLVRCTLHTGRT 261
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
HQIRVHM + H +V D LYG + + +RQALHA++L +HP L++ LP+D
Sbjct: 262 HQIRVHMASIRHPLVADVLYGGAMAGPM--HRQALHAFRLAFVHPVTGAPLEFHAPLPED 319
Query: 245 ISKLITFSGIKW 256
+++ + F G+++
Sbjct: 320 MTQALDFWGLRY 331
>gi|118602363|ref|YP_903578.1| ribosomal large subunit pseudouridine synthase D [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567302|gb|ABL02107.1| ribosomal large subunit pseudouridine synthase D [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 314
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 147/237 (62%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +D++YED III+NK LV HP + N +GTL + LL L N+ RAGIVHRLDKN
Sbjct: 78 IVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSLANLDRAGIVHRLDKN 137
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+S + +L QL+ H + R+Y A+V+G G ++ I R+P +RI+ TV
Sbjct: 138 TSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISGGTVDKPIGRDPKDRIRQTV 197
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
++ + K ALT+Y ER A H + ++ L+TGRTHQIRVH+ ++GH ++ D +
Sbjct: 198 TE--SGKDALTHYRVIERFA-------HHTHVKVMLETGRTHQIRVHLSFIGHPLIADPM 248
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG KK K L FNRQ LHA KL LIHP + + W++ LP D+ L+
Sbjct: 249 YGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQDMQDLL 305
>gi|53804663|ref|YP_113451.1| ribosomal large subunit pseudouridine synthase D [Methylococcus
capsulatus str. Bath]
gi|53758424|gb|AAU92715.1| ribosomal large subunit pseudouridine synthase D [Methylococcus
capsulatus str. Bath]
Length = 334
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 149/240 (62%), Gaps = 17/240 (7%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80
+ E + I L +++ D I +++K AGLVVHPA G+ +GTL + LL + P L +PR GIV
Sbjct: 94 ECEAEAIPLTVVHADESIFVIDKPAGLVVHPAAGHPAGTLQNALLHLDPALAAIPRCGIV 153
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHN 140
HRLDK++SGL+VVA++++++ LV+QLK V R+YLA+V G+ ++ I R+P +
Sbjct: 154 HRLDKDTSGLLVVARTLEAHKSLVDQLKDRSVNREYLALVQGMVTAGATVDEPIGRHPAD 213
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
R + V + + ++T+Y R+ + H +L+R L+TGRTHQIRVHM L H +VG
Sbjct: 214 RKRFAVRP--DGRESVTHY-RVEERFL---HHTLLRVRLETGRTHQIRVHMAHLHHPLVG 267
Query: 201 DNLYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D +YG + LI F RQALHA +LGLIHP+ ++ W LP D L+
Sbjct: 268 DPVYGGRARIPAAADPVLIDVLRGFRRQALHAARLGLIHPEKGGEMAWESPLPPDFDALL 327
>gi|50122269|ref|YP_051436.1| 23S rRNA pseudouridine synthase D [Pectobacterium atrosepticum
SCRI1043]
gi|49612795|emb|CAG76245.1| ribosomal large subunit pseudouridine synthase D [Pectobacterium
atrosepticum SCRI1043]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVEQPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHIDHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L HP ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASDDFIEMLRGFDRQALHATMLRFYHPITGIQMEWHAALPQDMVDLI 309
>gi|53728774|ref|ZP_00135229.2| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208592|ref|YP_001053817.1| 23S rRNA pseudouridine synthase D [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|165976548|ref|YP_001652141.1| 23S rRNA pseudouridine synthase D [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190150449|ref|YP_001968974.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303253303|ref|ZP_07339452.1| 23S rRNA pseudouridine synthase D [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307246037|ref|ZP_07528119.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307248145|ref|ZP_07530173.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250378|ref|ZP_07532326.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307255019|ref|ZP_07536837.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257175|ref|ZP_07538947.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259455|ref|ZP_07541180.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261604|ref|ZP_07543272.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|126097384|gb|ABN74212.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876649|gb|ABY69697.1| pseudouridine synthase [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|189915580|gb|ACE61832.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647985|gb|EFL78192.1| 23S rRNA pseudouridine synthase D [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306852972|gb|EFM85195.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855322|gb|EFM87497.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857588|gb|EFM89696.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306861892|gb|EFM93868.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306864337|gb|EFM96248.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306866391|gb|EFM98254.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868727|gb|EFN00536.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ G+ G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAVASGVMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASEEFLAVLRGFQRQALHATMLRLEHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|237801870|ref|ZP_04590331.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|422649155|ref|ZP_16712265.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330962679|gb|EGH62939.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|331024728|gb|EGI04784.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 320
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPITGKRMSWESPLPDDFVWLLSL 310
>gi|417424066|ref|ZP_12160361.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353617831|gb|EHC68699.1| Ribosomal large subunit pseudouridine synthase D [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
Length = 267
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 19 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 78
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 79 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 138
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 139 HMAVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 192
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 193 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 250
>gi|238790742|ref|ZP_04634503.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
frederiksenii ATCC 33641]
gi|238721183|gb|EEQ12862.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
frederiksenii ATCC 33641]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPKIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFISILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|420270860|ref|ZP_14773217.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA22]
gi|420276606|ref|ZP_14778889.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA40]
gi|420281773|ref|ZP_14784008.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW06591]
gi|420299473|ref|ZP_14801522.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW09109]
gi|420305431|ref|ZP_14807424.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW10119]
gi|420312631|ref|ZP_14814549.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1738]
gi|420316451|ref|ZP_14818325.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1734]
gi|421825401|ref|ZP_16260758.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK920]
gi|421831561|ref|ZP_16266851.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA7]
gi|424078691|ref|ZP_17815679.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA505]
gi|424085157|ref|ZP_17821658.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA517]
gi|424098190|ref|ZP_17833508.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1985]
gi|424104422|ref|ZP_17839200.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1990]
gi|424111094|ref|ZP_17845336.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
93-001]
gi|424117031|ref|ZP_17850877.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA3]
gi|424123213|ref|ZP_17856541.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA5]
gi|424129378|ref|ZP_17862291.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA9]
gi|424135650|ref|ZP_17868120.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA10]
gi|424142218|ref|ZP_17874111.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA14]
gi|424148645|ref|ZP_17880027.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA15]
gi|424154461|ref|ZP_17885423.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA24]
gi|424251188|ref|ZP_17890987.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA25]
gi|424457099|ref|ZP_17908242.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA33]
gi|424469875|ref|ZP_17919705.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA41]
gi|424476398|ref|ZP_17925721.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA42]
gi|424501682|ref|ZP_17948584.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4203]
gi|424521468|ref|ZP_17965603.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW14301]
gi|424527361|ref|ZP_17971084.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4421]
gi|424533511|ref|ZP_17976868.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4422]
gi|424540918|ref|ZP_17983847.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4013]
gi|424545661|ref|ZP_17988074.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4402]
gi|424558088|ref|ZP_17999511.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4436]
gi|424570567|ref|ZP_18011127.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4448]
gi|424576714|ref|ZP_18016795.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1845]
gi|424582552|ref|ZP_18022204.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1863]
gi|425157269|ref|ZP_18556539.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA34]
gi|425181460|ref|ZP_18579162.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1999]
gi|425187726|ref|ZP_18585006.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1997]
gi|425200977|ref|ZP_18597191.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
NE037]
gi|425207360|ref|ZP_18603164.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK2001]
gi|425225786|ref|ZP_18620259.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA49]
gi|425232049|ref|ZP_18626095.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA45]
gi|425250355|ref|ZP_18643297.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
5905]
gi|425262432|ref|ZP_18654447.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC96038]
gi|425295866|ref|ZP_18686075.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA38]
gi|425312570|ref|ZP_18701761.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1735]
gi|425318564|ref|ZP_18707360.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1736]
gi|425343516|ref|ZP_18730413.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1848]
gi|425349326|ref|ZP_18735801.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1849]
gi|425355621|ref|ZP_18741694.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1850]
gi|425361585|ref|ZP_18747238.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1856]
gi|425367765|ref|ZP_18752933.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1862]
gi|425374114|ref|ZP_18758762.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1864]
gi|425412269|ref|ZP_18794038.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
NE098]
gi|390642397|gb|EIN21795.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA517]
gi|390643358|gb|EIN22712.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA505]
gi|390659775|gb|EIN37523.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
93-001]
gi|390661053|gb|EIN38725.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1985]
gi|390662862|gb|EIN40398.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1990]
gi|390676584|gb|EIN52674.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA3]
gi|390679829|gb|EIN55695.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA5]
gi|390683120|gb|EIN58834.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA9]
gi|390695599|gb|EIN70118.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA10]
gi|390700127|gb|EIN74448.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA15]
gi|390700599|gb|EIN74892.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA14]
gi|390713748|gb|EIN86676.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA22]
gi|390721877|gb|EIN94570.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA25]
gi|390723378|gb|EIN95974.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA24]
gi|390744544|gb|EIO15400.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA33]
gi|390757409|gb|EIO26893.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA40]
gi|390766406|gb|EIO35528.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA41]
gi|390768115|gb|EIO37158.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA42]
gi|390780784|gb|EIO48478.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW06591]
gi|390807168|gb|EIO74070.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW09109]
gi|390815333|gb|EIO81868.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW10119]
gi|390825292|gb|EIO91227.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4203]
gi|390845545|gb|EIP09179.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW14301]
gi|390850002|gb|EIP13398.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4421]
gi|390860760|gb|EIP23052.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4422]
gi|390862607|gb|EIP24783.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4013]
gi|390870017|gb|EIP31590.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4402]
gi|390883124|gb|EIP43581.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4436]
gi|390895119|gb|EIP54600.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4448]
gi|390897354|gb|EIP56689.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1738]
gi|390907454|gb|EIP66317.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1734]
gi|390918508|gb|EIP76905.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1863]
gi|390919700|gb|EIP78025.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1845]
gi|408065420|gb|EKG99894.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA7]
gi|408066057|gb|EKH00521.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK920]
gi|408069293|gb|EKH03684.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA34]
gi|408096982|gb|EKH29896.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1999]
gi|408103488|gb|EKH35834.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1997]
gi|408114541|gb|EKH46079.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
NE037]
gi|408120381|gb|EKH51378.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK2001]
gi|408139493|gb|EKH69103.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA49]
gi|408145585|gb|EKH74744.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA45]
gi|408163122|gb|EKH91002.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
5905]
gi|408179521|gb|EKI06181.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC96038]
gi|408217082|gb|EKI41368.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA38]
gi|408226589|gb|EKI50223.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1735]
gi|408237808|gb|EKI60653.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1736]
gi|408258404|gb|EKI79670.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1848]
gi|408264916|gb|EKI85681.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1849]
gi|408273597|gb|EKI93649.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1850]
gi|408276541|gb|EKI96440.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1856]
gi|408285693|gb|EKJ04685.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1862]
gi|408290484|gb|EKJ09197.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1864]
gi|408325707|gb|EKJ41563.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
NE098]
Length = 282
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 208 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 265
>gi|170766082|ref|ZP_02900893.1| ribosomal large subunit pseudouridine synthase D [Escherichia
albertii TW07627]
gi|170125228|gb|EDS94159.1| ribosomal large subunit pseudouridine synthase D [Escherichia
albertii TW07627]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKNVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +L+
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELV 309
>gi|238791395|ref|ZP_04635034.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
intermedia ATCC 29909]
gi|238729528|gb|EEQ21043.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
intermedia ATCC 29909]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTILNALLYYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFISILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|218706096|ref|YP_002413615.1| 23S rRNA pseudouridine synthase D [Escherichia coli UMN026]
gi|293406104|ref|ZP_06650030.1| rluD [Escherichia coli FVEC1412]
gi|298381836|ref|ZP_06991433.1| rluD [Escherichia coli FVEC1302]
gi|300900220|ref|ZP_07118406.1| pseudouridine synthase, RluA family [Escherichia coli MS 198-1]
gi|417587602|ref|ZP_12238369.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_C165-02]
gi|419934377|ref|ZP_14451491.1| 23S rRNA pseudouridine synthase D [Escherichia coli 576-1]
gi|432354509|ref|ZP_19597779.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE2]
gi|432402858|ref|ZP_19645609.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE26]
gi|432427131|ref|ZP_19669626.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE181]
gi|432461590|ref|ZP_19703736.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE204]
gi|432476818|ref|ZP_19718813.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE208]
gi|432518693|ref|ZP_19755878.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE228]
gi|432538814|ref|ZP_19775714.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE235]
gi|432632354|ref|ZP_19868278.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE80]
gi|432642070|ref|ZP_19877901.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE83]
gi|432667018|ref|ZP_19902597.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE116]
gi|432775673|ref|ZP_20009941.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE54]
gi|432887651|ref|ZP_20101622.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE158]
gi|432913823|ref|ZP_20119443.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE190]
gi|433019663|ref|ZP_20207854.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE105]
gi|433054237|ref|ZP_20241409.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE122]
gi|433068883|ref|ZP_20255667.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE128]
gi|433159639|ref|ZP_20344472.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE177]
gi|433179428|ref|ZP_20363821.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE82]
gi|218433193|emb|CAR14092.1| 23S rRNA pseudouridine synthase [Escherichia coli UMN026]
gi|291426110|gb|EFE99142.1| rluD [Escherichia coli FVEC1412]
gi|298276976|gb|EFI18492.1| rluD [Escherichia coli FVEC1302]
gi|300356255|gb|EFJ72125.1| pseudouridine synthase, RluA family [Escherichia coli MS 198-1]
gi|345334601|gb|EGW67043.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_C165-02]
gi|388408495|gb|EIL68839.1| 23S rRNA pseudouridine synthase D [Escherichia coli 576-1]
gi|430874325|gb|ELB97882.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE2]
gi|430924630|gb|ELC45315.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE26]
gi|430954360|gb|ELC73232.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE181]
gi|430988063|gb|ELD04564.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE204]
gi|431004125|gb|ELD19353.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE208]
gi|431050020|gb|ELD59779.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE228]
gi|431068694|gb|ELD77168.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE235]
gi|431169230|gb|ELE69451.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE80]
gi|431180934|gb|ELE80810.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE83]
gi|431199844|gb|ELE98571.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE116]
gi|431317136|gb|ELG04918.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE54]
gi|431415460|gb|ELG98002.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE158]
gi|431438680|gb|ELH20053.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE190]
gi|431529631|gb|ELI06327.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE105]
gi|431569330|gb|ELI42284.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE122]
gi|431582553|gb|ELI54571.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE128]
gi|431676530|gb|ELJ42647.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE177]
gi|431699972|gb|ELJ64960.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE82]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 IYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|407769550|ref|ZP_11116925.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407287472|gb|EKF12953.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 333
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 155/242 (64%), Gaps = 22/242 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIVHR 82
I LDI+YED++++++NK AG+VVHPA GN SGTL + LL + + V R GIVHR
Sbjct: 87 IALDILYEDDDLLVINKPAGMVVHPAAGNESGTLVNALLAHCGDSLSGIGGVKRPGIVHR 146
Query: 83 LDKNSSGLMVVAKSIKSY---IHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNP 138
LDK++SG MVVAK+ ++ L ++ K +I +R Y+A+VWG+P+ + G+I I R+P
Sbjct: 147 LDKDTSGAMVVAKNDATHRALSTLFSEDKENI-ERAYIAVVWGVPRQIEGVIEGNIGRSP 205
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM V +N KPALT Y+ LA + SL+ C L TGRTHQIRVHM LGH +
Sbjct: 206 RNRKKMAVLRN-GGKPALTRYKVLAK--RDDSLASLVECRLLTGRTHQIRVHMTHLGHSL 262
Query: 199 VGDNLYGK-----KYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
+ D +YG+ K+SK + F +QALHA LG +HPK + + LP+D+ +L
Sbjct: 263 ICDPVYGRSKLTQKFSKHVHEVLTGFEKQALHARTLGFLHPKTGNYVLTKAPLPEDLQEL 322
Query: 249 IT 250
IT
Sbjct: 323 IT 324
>gi|238765380|ref|ZP_04626304.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
kristensenii ATCC 33638]
gi|238696422|gb|EEP89215.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
kristensenii ATCC 33638]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|408483877|ref|ZP_11190096.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
R81]
Length = 320
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPR GIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRCGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVVAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S +++ F RQALHA L L HP + ++ W LPDD+ L++
Sbjct: 255 RFRIPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESPLPDDLVWLLSL 310
>gi|407692779|ref|YP_006817568.1| 23S rRNA pseudouridine synthase D [Actinobacillus suis H91-0380]
gi|407388836|gb|AFU19329.1| 23S rRNA pseudouridine synthase D [Actinobacillus suis H91-0380]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 144/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDILVINKPKDLVVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ G+ G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAVASGVMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S++ + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASEAFLTVLRGFQRQALHATMLRLEHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|418041508|ref|ZP_12679730.1| uridine synthase, RluA family [Escherichia coli W26]
gi|383475592|gb|EID67549.1| uridine synthase, RluA family [Escherichia coli W26]
Length = 282
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 208 VYGGRPRPPKGASEAFISMLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 265
>gi|218547883|ref|YP_002381674.1| 23S rRNA pseudouridine synthase D [Escherichia fergusonii ATCC
35469]
gi|422807812|ref|ZP_16856240.1| RluA family protein pseudouridine synthase [Escherichia fergusonii
B253]
gi|218355424|emb|CAQ88032.1| 23S rRNA pseudouridine synthase [Escherichia fergusonii ATCC 35469]
gi|324111235|gb|EGC05217.1| RluA family protein pseudouridine synthase [Escherichia fergusonii
B253]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|157156608|ref|YP_001463915.1| 23S rRNA pseudouridine synthase D [Escherichia coli E24377A]
gi|191169060|ref|ZP_03030823.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B7A]
gi|193064062|ref|ZP_03045147.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E22]
gi|193071695|ref|ZP_03052596.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E110019]
gi|194430158|ref|ZP_03062659.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B171]
gi|209920071|ref|YP_002294155.1| 23S rRNA pseudouridine synthase D [Escherichia coli SE11]
gi|260845276|ref|YP_003223054.1| 23S rRNA pseudouridine synthase [Escherichia coli O103:H2 str.
12009]
gi|260869276|ref|YP_003235678.1| 23S rRNA pseudouridine synthase [Escherichia coli O111:H- str.
11128]
gi|293448946|ref|ZP_06663367.1| rluD [Escherichia coli B088]
gi|300819932|ref|ZP_07100115.1| pseudouridine synthase, RluA family [Escherichia coli MS 107-1]
gi|300825129|ref|ZP_07105222.1| pseudouridine synthase, RluA family [Escherichia coli MS 119-7]
gi|300922522|ref|ZP_07138631.1| pseudouridine synthase, RluA family [Escherichia coli MS 182-1]
gi|301326710|ref|ZP_07220028.1| pseudouridine synthase, RluA family [Escherichia coli MS 78-1]
gi|307315092|ref|ZP_07594676.1| pseudouridine synthase, RluA family [Escherichia coli W]
gi|309794107|ref|ZP_07688531.1| pseudouridine synthase, RluA family [Escherichia coli MS 145-7]
gi|331669346|ref|ZP_08370192.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA271]
gi|331678588|ref|ZP_08379262.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli H591]
gi|332280710|ref|ZP_08393123.1| ribosomal large subunit pseudouridine synthase D [Shigella sp. D9]
gi|378711949|ref|YP_005276842.1| RluA family pseudouridine synthase [Escherichia coli KO11FL]
gi|386609992|ref|YP_006125478.1| 23S rRNA pseudouridine synthase [Escherichia coli W]
gi|386700463|ref|YP_006164300.1| 23S rRNA pseudouridine synthase D [Escherichia coli KO11FL]
gi|386710481|ref|YP_006174202.1| 23S rRNA pseudouridine synthase D [Escherichia coli W]
gi|415877633|ref|ZP_11543745.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
MS 79-10]
gi|417150923|ref|ZP_11990662.1| pseudouridine synthase, RluA family [Escherichia coli 1.2264]
gi|417154920|ref|ZP_11993049.1| pseudouridine synthase, RluA family [Escherichia coli 96.0497]
gi|417166674|ref|ZP_12000030.1| pseudouridine synthase, RluA family [Escherichia coli 99.0741]
gi|417185031|ref|ZP_12010527.1| pseudouridine synthase, RluA family [Escherichia coli 93.0624]
gi|417251922|ref|ZP_12043687.1| pseudouridine synthase, RluA family [Escherichia coli 4.0967]
gi|417269695|ref|ZP_12057055.1| pseudouridine synthase, RluA family [Escherichia coli 3.3884]
gi|417582100|ref|ZP_12232901.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_B2F1]
gi|417592931|ref|ZP_12243626.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
2534-86]
gi|417597902|ref|ZP_12248537.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3030-1]
gi|417624593|ref|ZP_12274890.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_H.1.8]
gi|417667998|ref|ZP_12317542.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_O31]
gi|419200630|ref|ZP_13743896.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC8A]
gi|419203079|ref|ZP_13746283.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8B]
gi|419278379|ref|ZP_13820630.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10E]
gi|419290584|ref|ZP_13832673.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11A]
gi|419295917|ref|ZP_13837960.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11B]
gi|419303542|ref|ZP_13845517.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC11C]
gi|419307496|ref|ZP_13849394.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC11D]
gi|419312510|ref|ZP_13854371.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC11E]
gi|419317888|ref|ZP_13859690.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC12A]
gi|419324076|ref|ZP_13865768.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12B]
gi|419330104|ref|ZP_13871705.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC12C]
gi|419335679|ref|ZP_13877201.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12D]
gi|419341034|ref|ZP_13882497.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12E]
gi|419346243|ref|ZP_13887615.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13A]
gi|419350703|ref|ZP_13892038.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13B]
gi|419356157|ref|ZP_13897410.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13C]
gi|419361220|ref|ZP_13902436.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13D]
gi|419381865|ref|ZP_13922814.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14C]
gi|419387212|ref|ZP_13928087.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14D]
gi|419865983|ref|ZP_14388355.1| 23S rRNA pseudouridine synthase D [Escherichia coli O103:H25 str.
CVM9340]
gi|419872057|ref|ZP_14394101.1| 23S rRNA pseudouridine synthase D [Escherichia coli O103:H2 str.
CVM9450]
gi|419886985|ref|ZP_14407602.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9570]
gi|419897688|ref|ZP_14417269.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9574]
gi|419927012|ref|ZP_14444755.1| 23S rRNA pseudouridine synthase D [Escherichia coli 541-1]
gi|420091282|ref|ZP_14603033.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9602]
gi|420093019|ref|ZP_14604707.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9634]
gi|420392399|ref|ZP_14891650.1| 23S rRNA pseudouridine synthase [Escherichia coli EPEC C342-62]
gi|422355468|ref|ZP_16436183.1| pseudouridine synthase, RluA family [Escherichia coli MS 117-3]
gi|422760081|ref|ZP_16813841.1| RluA family protein pseudouridine synthase [Escherichia coli E1167]
gi|422776205|ref|ZP_16829860.1| RluA family protein pseudouridine synthase [Escherichia coli H120]
gi|422962609|ref|ZP_16972882.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
H494]
gi|423706712|ref|ZP_17681095.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B799]
gi|424773378|ref|ZP_18200440.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425423441|ref|ZP_18804605.1| pseudouridine synthase [Escherichia coli 0.1288]
gi|432377800|ref|ZP_19620789.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE12]
gi|432675716|ref|ZP_19911172.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE142]
gi|432751040|ref|ZP_19985641.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE29]
gi|432806779|ref|ZP_20040699.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE91]
gi|432810273|ref|ZP_20044152.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE101]
gi|432828239|ref|ZP_20061861.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE135]
gi|432835545|ref|ZP_20069082.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE136]
gi|432935501|ref|ZP_20134842.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE184]
gi|433092965|ref|ZP_20279228.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE138]
gi|433194650|ref|ZP_20378634.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE90]
gi|450220043|ref|ZP_21896288.1| 23S rRNA pseudouridine synthase D [Escherichia coli O08]
gi|157078638|gb|ABV18346.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E24377A]
gi|190900901|gb|EDV60687.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B7A]
gi|192929297|gb|EDV82906.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E22]
gi|192954990|gb|EDV85492.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E110019]
gi|194411783|gb|EDX28104.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B171]
gi|209913330|dbj|BAG78404.1| putative pseudouridine synthase [Escherichia coli SE11]
gi|257760423|dbj|BAI31920.1| 23S rRNA pseudouridine synthase [Escherichia coli O103:H2 str.
12009]
gi|257765632|dbj|BAI37127.1| 23S rRNA pseudouridine synthase [Escherichia coli O111:H- str.
11128]
gi|291322036|gb|EFE61465.1| rluD [Escherichia coli B088]
gi|300421134|gb|EFK04445.1| pseudouridine synthase, RluA family [Escherichia coli MS 182-1]
gi|300522401|gb|EFK43470.1| pseudouridine synthase, RluA family [Escherichia coli MS 119-7]
gi|300527520|gb|EFK48582.1| pseudouridine synthase, RluA family [Escherichia coli MS 107-1]
gi|300846633|gb|EFK74393.1| pseudouridine synthase, RluA family [Escherichia coli MS 78-1]
gi|306905521|gb|EFN36055.1| pseudouridine synthase, RluA family [Escherichia coli W]
gi|308122012|gb|EFO59274.1| pseudouridine synthase, RluA family [Escherichia coli MS 145-7]
gi|315061909|gb|ADT76236.1| 23S rRNA pseudouridine synthase [Escherichia coli W]
gi|323377510|gb|ADX49778.1| pseudouridine synthase, RluA family [Escherichia coli KO11FL]
gi|323946277|gb|EGB42310.1| RluA family protein pseudouridine synthase [Escherichia coli H120]
gi|324016579|gb|EGB85798.1| pseudouridine synthase, RluA family [Escherichia coli MS 117-3]
gi|324120053|gb|EGC13929.1| RluA family protein pseudouridine synthase [Escherichia coli E1167]
gi|331063014|gb|EGI34927.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA271]
gi|331073418|gb|EGI44739.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli H591]
gi|332103062|gb|EGJ06408.1| ribosomal large subunit pseudouridine synthase D [Shigella sp. D9]
gi|342927875|gb|EGU96597.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
MS 79-10]
gi|345335557|gb|EGW67994.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_B2F1]
gi|345337106|gb|EGW69539.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
2534-86]
gi|345352425|gb|EGW84674.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3030-1]
gi|345376359|gb|EGX08297.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_H.1.8]
gi|371592089|gb|EHN81011.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
H494]
gi|378039353|gb|EHW01846.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC8A]
gi|378052572|gb|EHW14876.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8B]
gi|378128358|gb|EHW89740.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11A]
gi|378129123|gb|EHW90499.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10E]
gi|378140642|gb|EHX01865.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11B]
gi|378143620|gb|EHX04811.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC11C]
gi|378147458|gb|EHX08605.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC11D]
gi|378157018|gb|EHX18062.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC11E]
gi|378164353|gb|EHX25299.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12B]
gi|378168581|gb|EHX29485.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC12A]
gi|378168941|gb|EHX29842.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC12C]
gi|378180555|gb|EHX41236.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12D]
gi|378185030|gb|EHX45662.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13A]
gi|378187003|gb|EHX47623.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12E]
gi|378199030|gb|EHX59498.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13C]
gi|378199231|gb|EHX59697.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13B]
gi|378202341|gb|EHX62779.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13D]
gi|378227092|gb|EHX87269.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14C]
gi|378230379|gb|EHX90498.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14D]
gi|383391990|gb|AFH16948.1| 23S rRNA pseudouridine synthase D [Escherichia coli KO11FL]
gi|383406173|gb|AFH12416.1| 23S rRNA pseudouridine synthase D [Escherichia coli W]
gi|385711189|gb|EIG48149.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
B799]
gi|386160417|gb|EIH22228.1| pseudouridine synthase, RluA family [Escherichia coli 1.2264]
gi|386168009|gb|EIH34525.1| pseudouridine synthase, RluA family [Escherichia coli 96.0497]
gi|386171831|gb|EIH43870.1| pseudouridine synthase, RluA family [Escherichia coli 99.0741]
gi|386183093|gb|EIH65844.1| pseudouridine synthase, RluA family [Escherichia coli 93.0624]
gi|386218771|gb|EII35254.1| pseudouridine synthase, RluA family [Escherichia coli 4.0967]
gi|386228500|gb|EII55856.1| pseudouridine synthase, RluA family [Escherichia coli 3.3884]
gi|388335558|gb|EIL02118.1| 23S rRNA pseudouridine synthase D [Escherichia coli O103:H2 str.
CVM9450]
gi|388336440|gb|EIL02983.1| 23S rRNA pseudouridine synthase D [Escherichia coli O103:H25 str.
CVM9340]
gi|388354957|gb|EIL19829.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9574]
gi|388364109|gb|EIL27984.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9570]
gi|388408438|gb|EIL68784.1| 23S rRNA pseudouridine synthase D [Escherichia coli 541-1]
gi|391312166|gb|EIQ69789.1| 23S rRNA pseudouridine synthase [Escherichia coli EPEC C342-62]
gi|394383684|gb|EJE61274.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9602]
gi|394399881|gb|EJE75851.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CVM9634]
gi|397784400|gb|EJK95254.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_O31]
gi|408342858|gb|EKJ57272.1| pseudouridine synthase [Escherichia coli 0.1288]
gi|421936385|gb|EKT94049.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H8 str.
CFSAN001632]
gi|430897820|gb|ELC20014.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE12]
gi|431213523|gb|ELF11397.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE142]
gi|431295670|gb|ELF85403.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE29]
gi|431354167|gb|ELG40906.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE91]
gi|431361326|gb|ELG47917.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE101]
gi|431384373|gb|ELG68429.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE135]
gi|431384442|gb|ELG68494.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE136]
gi|431452019|gb|ELH32470.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE184]
gi|431609407|gb|ELI78729.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE138]
gi|431714778|gb|ELJ78955.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE90]
gi|449316771|gb|EMD06876.1| 23S rRNA pseudouridine synthase D [Escherichia coli O08]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISMLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|331654054|ref|ZP_08355054.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli M718]
gi|331047436|gb|EGI19513.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli M718]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|398873429|ref|ZP_10628687.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM74]
gi|398199642|gb|EJM86578.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM74]
Length = 320
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKNFPRQALHARFLELDHPTTGQRMSWESPLPEDFVWLLTL 310
>gi|331674037|ref|ZP_08374799.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA280]
gi|432869990|ref|ZP_20090522.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE147]
gi|331068776|gb|EGI40169.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA280]
gi|431409812|gb|ELG92982.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE147]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|425380772|ref|ZP_18764787.1| pseudouridine synthase [Escherichia coli EC1865]
gi|408295460|gb|EKJ13774.1| pseudouridine synthase [Escherichia coli EC1865]
Length = 282
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 34 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 93
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 94 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 153
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 154 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 207
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 208 VYGGRPRPPKGASEAFISMLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 265
>gi|28211276|ref|NP_782220.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
gi|28203716|gb|AAO36157.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
Length = 307
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 150/232 (64%), Gaps = 13/232 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGI 79
EK+ + L+I+YED +II++NK G+VVHP +GN GTL + LL L N+ R GI
Sbjct: 76 EKENMDLNILYEDEDIIVINKPQGMVVHPGVGNTKGTLVNGLLAHCKSLSNINGEERPGI 135
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNP 138
VHR+DK++SG++V+AK+ +++ HL NQLK H + R Y+A+ G+ K + G I+ + RNP
Sbjct: 136 VHRIDKDTSGILVIAKTNRAHEHLANQLKDHSMLRVYMALTEGVIKEDMGTIDKDLGRNP 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHG 197
+RIK V K A+T+Y+ +IN+ + SLI C L+TGRTHQIRVHM ++GH
Sbjct: 196 SDRIKFAVVDE--GKRAVTHYK-----VINRYNNNSLIECRLETGRTHQIRVHMSYIGHP 248
Query: 198 IVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
IVGD YG K K Q LHA KLG IHP N +++ +P++ K++
Sbjct: 249 IVGDPTYGYKRQK-FKLKGQMLHAKKLGFIHPTNGEYMEFDSEIPEEFKKIL 299
>gi|403059618|ref|YP_006647835.1| RluA family pseudouridine synthase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402806944|gb|AFR04582.1| pseudouridine synthase, RluA family [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 325
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVDQPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ I F+RQALHA L HP + ++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEDFIETLRGFDRQALHATMLRFYHPITGIHMEWHAELPQDMVDLI 309
>gi|227888161|ref|ZP_04005966.1| 23S rRNA pseudouridine synthase [Escherichia coli 83972]
gi|386640117|ref|YP_006106915.1| 23S rRNA pseudouridine synthase [Escherichia coli ABU 83972]
gi|227834801|gb|EEJ45267.1| 23S rRNA pseudouridine synthase [Escherichia coli 83972]
gi|307554609|gb|ADN47384.1| 23S rRNA pseudouridine synthase [Escherichia coli ABU 83972]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|215487933|ref|YP_002330364.1| 23S rRNA pseudouridine synthase D [Escherichia coli O127:H6 str.
E2348/69]
gi|218690713|ref|YP_002398925.1| 23S rRNA pseudouridine synthase D [Escherichia coli ED1a]
gi|312965509|ref|ZP_07779741.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
2362-75]
gi|387830485|ref|YP_003350422.1| putative pseudouridine synthase [Escherichia coli SE15]
gi|417756849|ref|ZP_12404922.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2B]
gi|419008835|ref|ZP_13556264.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1C]
gi|419014506|ref|ZP_13561853.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC1D]
gi|419019522|ref|ZP_13566827.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1E]
gi|419025021|ref|ZP_13572246.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC2A]
gi|419030058|ref|ZP_13577218.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2C]
gi|419040764|ref|ZP_13587788.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2E]
gi|432398540|ref|ZP_19641319.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE25]
gi|432407667|ref|ZP_19650374.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE28]
gi|432501077|ref|ZP_19742833.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE216]
gi|432554639|ref|ZP_19791359.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE47]
gi|432559800|ref|ZP_19796468.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE49]
gi|432695404|ref|ZP_19930601.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE162]
gi|432706865|ref|ZP_19941946.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE6]
gi|432724060|ref|ZP_19958977.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE17]
gi|432728642|ref|ZP_19963519.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE18]
gi|432742326|ref|ZP_19977044.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE23]
gi|432889816|ref|ZP_20102922.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE165]
gi|432920563|ref|ZP_20124198.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE173]
gi|432928160|ref|ZP_20129413.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE175]
gi|432981964|ref|ZP_20170738.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE211]
gi|432991691|ref|ZP_20180355.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE217]
gi|433097406|ref|ZP_20283588.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE139]
gi|433106850|ref|ZP_20292821.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE148]
gi|433111826|ref|ZP_20297686.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE150]
gi|433199302|ref|ZP_20383196.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE94]
gi|215266005|emb|CAS10416.1| 23S rRNA pseudouridine synthase [Escherichia coli O127:H6 str.
E2348/69]
gi|218428277|emb|CAR09055.1| 23S rRNA pseudouridine synthase [Escherichia coli ED1a]
gi|281179642|dbj|BAI55972.1| putative pseudouridine synthase [Escherichia coli SE15]
gi|312289929|gb|EFR17817.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
2362-75]
gi|377842994|gb|EHU08037.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1C]
gi|377855965|gb|EHU20827.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC1D]
gi|377859213|gb|EHU24047.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1E]
gi|377862697|gb|EHU27505.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC2A]
gi|377873034|gb|EHU37674.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2B]
gi|377876583|gb|EHU41183.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2C]
gi|377889076|gb|EHU53543.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2E]
gi|430914788|gb|ELC35883.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE25]
gi|430928808|gb|ELC49339.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE28]
gi|431027662|gb|ELD40719.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE216]
gi|431082717|gb|ELD89029.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE47]
gi|431090183|gb|ELD95953.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE49]
gi|431233026|gb|ELF28624.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE162]
gi|431256996|gb|ELF49926.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE6]
gi|431264652|gb|ELF56357.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE17]
gi|431272403|gb|ELF63505.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE18]
gi|431282815|gb|ELF73689.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE23]
gi|431433013|gb|ELH14687.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE165]
gi|431441765|gb|ELH22873.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE173]
gi|431443125|gb|ELH24203.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE175]
gi|431490477|gb|ELH70089.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE211]
gi|431495773|gb|ELH75359.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE217]
gi|431614623|gb|ELI83763.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE139]
gi|431625961|gb|ELI94514.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE148]
gi|431627375|gb|ELI95782.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE150]
gi|431719930|gb|ELJ83966.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE94]
Length = 326
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|21232518|ref|NP_638435.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66767398|ref|YP_242160.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. campestris str. 8004]
gi|34395783|sp|Q8P682.1|RLUD_XANCP RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|21114309|gb|AAM42359.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66572730|gb|AAY48140.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. campestris str. 8004]
Length = 331
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+ +++++K AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G +A I R+P +R+KM V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP + ++ +P+D+ +L++
Sbjct: 259 YGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPIRASAPVPEDLQRLMS 316
>gi|389839940|ref|YP_006342024.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii ES15]
gi|429115634|ref|ZP_19176552.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
sakazakii 701]
gi|387850416|gb|AFJ98513.1| 23S rRNA pseudouridine synthase D [Cronobacter sakazakii ES15]
gi|426318763|emb|CCK02665.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
sakazakii 701]
Length = 300
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 226 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPISGILMEWHAPIPQDMVDLI 283
>gi|24113932|ref|NP_708442.1| 23S rRNA pseudouridine synthase D [Shigella flexneri 2a str. 301]
gi|26248957|ref|NP_754997.1| 23S rRNA pseudouridine synthase D [Escherichia coli CFT073]
gi|30063991|ref|NP_838162.1| 23S rRNA pseudouridine synthase D [Shigella flexneri 2a str. 2457T]
gi|74313153|ref|YP_311572.1| 23S rRNA pseudouridine synthase D [Shigella sonnei Ss046]
gi|110642757|ref|YP_670487.1| 23S rRNA pseudouridine synthase D [Escherichia coli 536]
gi|110806535|ref|YP_690055.1| 23S rRNA pseudouridine synthase D [Shigella flexneri 5 str. 8401]
gi|191174579|ref|ZP_03036074.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
F11]
gi|218555174|ref|YP_002388087.1| 23S rRNA pseudouridine synthase D [Escherichia coli IAI1]
gi|218696219|ref|YP_002403886.1| 23S rRNA pseudouridine synthase D [Escherichia coli 55989]
gi|293411985|ref|ZP_06654708.1| rluD [Escherichia coli B354]
gi|300940369|ref|ZP_07154957.1| pseudouridine synthase, RluA family [Escherichia coli MS 21-1]
gi|300976568|ref|ZP_07173520.1| pseudouridine synthase, RluA family [Escherichia coli MS 200-1]
gi|300986849|ref|ZP_07177832.1| pseudouridine synthase, RluA family [Escherichia coli MS 45-1]
gi|301026354|ref|ZP_07189802.1| pseudouridine synthase, RluA family [Escherichia coli MS 69-1]
gi|301050463|ref|ZP_07197345.1| pseudouridine synthase, RluA family [Escherichia coli MS 185-1]
gi|306812486|ref|ZP_07446684.1| 23S rRNA pseudouridine synthase D [Escherichia coli NC101]
gi|331648338|ref|ZP_08349426.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli M605]
gi|331658744|ref|ZP_08359686.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA206]
gi|331664161|ref|ZP_08365070.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA143]
gi|366161827|ref|ZP_09461689.1| 23S rRNA pseudouridine synthase D [Escherichia sp. TW09308]
gi|383179717|ref|YP_005457722.1| 23S rRNA pseudouridine synthase D [Shigella sonnei 53G]
gi|384544216|ref|YP_005728279.1| Ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2002017]
gi|386630363|ref|YP_006150083.1| 23S rRNA pseudouridine synthase D [Escherichia coli str. 'clone D
i2']
gi|386635283|ref|YP_006155002.1| 23S rRNA pseudouridine synthase D [Escherichia coli str. 'clone D
i14']
gi|387608242|ref|YP_006097098.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
042]
gi|407470489|ref|YP_006783068.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480849|ref|YP_006777998.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481415|ref|YP_006768961.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414577324|ref|ZP_11434501.1| ribosomal large subunit pseudouridine synthase D [Shigella sonnei
3233-85]
gi|415828628|ref|ZP_11515126.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
OK1357]
gi|415857538|ref|ZP_11532238.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2a str. 2457T]
gi|416898786|ref|ZP_11928332.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_7v]
gi|417115789|ref|ZP_11966925.1| pseudouridine synthase, RluA family [Escherichia coli 1.2741]
gi|417220932|ref|ZP_12024372.1| pseudouridine synthase, RluA family [Escherichia coli 96.154]
gi|417286151|ref|ZP_12073442.1| pseudouridine synthase, RluA family [Escherichia coli TW07793]
gi|417609223|ref|ZP_12259725.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_DG131-3]
gi|417663141|ref|ZP_12312722.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
AA86]
gi|417724350|ref|ZP_12373152.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-304]
gi|417729513|ref|ZP_12378208.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-671]
gi|417734673|ref|ZP_12383321.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2747-71]
gi|417744469|ref|ZP_12392993.1| 23S rRNA pseudouridine synthase [Shigella flexneri 2930-71]
gi|417806142|ref|ZP_12453088.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
LB226692]
gi|417829031|ref|ZP_12475579.1| 23S rRNA pseudouridine synthase [Shigella flexneri J1713]
gi|417833890|ref|ZP_12480337.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
01-09591]
gi|417866685|ref|ZP_12511725.1| rluD [Escherichia coli O104:H4 str. C227-11]
gi|419371082|ref|ZP_13912198.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC14A]
gi|419392710|ref|ZP_13933516.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15A]
gi|419397696|ref|ZP_13938464.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15B]
gi|419403101|ref|ZP_13943821.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15C]
gi|419408268|ref|ZP_13948954.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15D]
gi|419413749|ref|ZP_13954400.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15E]
gi|419912522|ref|ZP_14430973.1| 23S rRNA pseudouridine synthase D [Escherichia coli KD1]
gi|419920262|ref|ZP_14438384.1| 23S rRNA pseudouridine synthase D [Escherichia coli KD2]
gi|419948568|ref|ZP_14464862.1| 23S rRNA pseudouridine synthase D [Escherichia coli CUMT8]
gi|420321788|ref|ZP_14823613.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2850-71]
gi|420342990|ref|ZP_14844459.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-404]
gi|420374580|ref|ZP_14874548.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
1235-66]
gi|421778300|ref|ZP_16214878.1| 23S rRNA pseudouridine synthase D [Escherichia coli AD30]
gi|422331583|ref|ZP_16412598.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
4_1_47FAA]
gi|422366377|ref|ZP_16446849.1| pseudouridine synthase, RluA family [Escherichia coli MS 153-1]
gi|422369615|ref|ZP_16450015.1| pseudouridine synthase, RluA family [Escherichia coli MS 16-3]
gi|422376239|ref|ZP_16456491.1| pseudouridine synthase, RluA family [Escherichia coli MS 60-1]
gi|422780506|ref|ZP_16833291.1| RluA family protein pseudouridine synthase [Escherichia coli
TW10509]
gi|422803519|ref|ZP_16852005.1| RluA family protein pseudouridine synthase [Escherichia coli M863]
gi|422988716|ref|ZP_16979489.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. C227-11]
gi|422995608|ref|ZP_16986372.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. C236-11]
gi|423000753|ref|ZP_16991507.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 09-7901]
gi|423004425|ref|ZP_16995171.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 04-8351]
gi|423010925|ref|ZP_17001659.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-3677]
gi|423020153|ref|ZP_17010862.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4404]
gi|423025319|ref|ZP_17016016.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4522]
gi|423031140|ref|ZP_17021827.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4623]
gi|423038965|ref|ZP_17029639.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044085|ref|ZP_17034752.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045813|ref|ZP_17036473.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054352|ref|ZP_17043159.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061327|ref|ZP_17050123.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|424838926|ref|ZP_18263563.1| 23S rRNA pseudouridine synthase D [Shigella flexneri 5a str. M90T]
gi|425301448|ref|ZP_18691337.1| pseudouridine synthase [Escherichia coli 07798]
gi|429720181|ref|ZP_19255109.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772081|ref|ZP_19304102.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02030]
gi|429777026|ref|ZP_19309002.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785753|ref|ZP_19317649.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02092]
gi|429791643|ref|ZP_19323498.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02093]
gi|429792491|ref|ZP_19324341.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02281]
gi|429799067|ref|ZP_19330866.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02318]
gi|429807580|ref|ZP_19339305.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02913]
gi|429812480|ref|ZP_19344164.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-03439]
gi|429818002|ref|ZP_19349640.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-04080]
gi|429823213|ref|ZP_19354808.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-03943]
gi|429904588|ref|ZP_19370567.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908726|ref|ZP_19374690.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914598|ref|ZP_19380545.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919628|ref|ZP_19385559.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925448|ref|ZP_19391361.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929384|ref|ZP_19395286.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935923|ref|ZP_19401809.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941603|ref|ZP_19407477.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944284|ref|ZP_19410146.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951842|ref|ZP_19417688.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955191|ref|ZP_19421023.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432373210|ref|ZP_19616248.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE11]
gi|432382288|ref|ZP_19625230.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE15]
gi|432388265|ref|ZP_19631148.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE16]
gi|432389695|ref|ZP_19632565.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE21]
gi|432412758|ref|ZP_19655419.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE39]
gi|432432834|ref|ZP_19675260.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE187]
gi|432437316|ref|ZP_19679704.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE188]
gi|432442057|ref|ZP_19684396.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE189]
gi|432447162|ref|ZP_19689461.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE191]
gi|432457657|ref|ZP_19699838.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE201]
gi|432466779|ref|ZP_19708866.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE205]
gi|432471924|ref|ZP_19713966.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE206]
gi|432481940|ref|ZP_19723895.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE210]
gi|432490361|ref|ZP_19732229.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE213]
gi|432496652|ref|ZP_19738448.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE214]
gi|432505396|ref|ZP_19747118.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE220]
gi|432514896|ref|ZP_19752118.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE224]
gi|432524790|ref|ZP_19761916.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE230]
gi|432534911|ref|ZP_19771882.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE234]
gi|432544232|ref|ZP_19781073.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE236]
gi|432549723|ref|ZP_19786488.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE237]
gi|432569679|ref|ZP_19806188.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE53]
gi|432582288|ref|ZP_19818701.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE57]
gi|432593811|ref|ZP_19830125.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE60]
gi|432603222|ref|ZP_19839465.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE66]
gi|432608478|ref|ZP_19844662.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE67]
gi|432612568|ref|ZP_19848728.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE72]
gi|432622824|ref|ZP_19858851.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE76]
gi|432647121|ref|ZP_19882909.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE86]
gi|432652119|ref|ZP_19887871.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE87]
gi|432656757|ref|ZP_19892459.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE93]
gi|432681204|ref|ZP_19916576.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE143]
gi|432700025|ref|ZP_19935177.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE169]
gi|432714330|ref|ZP_19949365.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE8]
gi|432719740|ref|ZP_19954707.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE9]
gi|432746590|ref|ZP_19981254.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE43]
gi|432765954|ref|ZP_20000386.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE48]
gi|432771544|ref|ZP_20005869.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE50]
gi|432784509|ref|ZP_20018688.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE63]
gi|432793786|ref|ZP_20027869.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE78]
gi|432795285|ref|ZP_20029347.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE79]
gi|432816319|ref|ZP_20050101.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE115]
gi|432840385|ref|ZP_20073849.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE140]
gi|432845563|ref|ZP_20078346.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE141]
gi|432899703|ref|ZP_20110255.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE192]
gi|432905955|ref|ZP_20114719.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE194]
gi|432938975|ref|ZP_20137177.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE183]
gi|432962919|ref|ZP_20152389.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE202]
gi|432968669|ref|ZP_20157583.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE203]
gi|432972750|ref|ZP_20161615.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE207]
gi|432974746|ref|ZP_20163582.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE209]
gi|432986309|ref|ZP_20175029.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE215]
gi|432996301|ref|ZP_20184886.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE218]
gi|433000872|ref|ZP_20189395.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE223]
gi|433014871|ref|ZP_20203212.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE104]
gi|433024445|ref|ZP_20212425.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE106]
gi|433029527|ref|ZP_20217382.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE109]
gi|433039596|ref|ZP_20227193.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE113]
gi|433059080|ref|ZP_20246121.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE124]
gi|433064034|ref|ZP_20250950.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE125]
gi|433073820|ref|ZP_20260470.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE129]
gi|433078769|ref|ZP_20265295.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE131]
gi|433083505|ref|ZP_20269960.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE133]
gi|433088279|ref|ZP_20274647.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE137]
gi|433102133|ref|ZP_20288211.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE145]
gi|433116484|ref|ZP_20302272.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE153]
gi|433121151|ref|ZP_20306819.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE157]
gi|433126154|ref|ZP_20311708.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE160]
gi|433140222|ref|ZP_20325474.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE167]
gi|433145194|ref|ZP_20330334.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE168]
gi|433150140|ref|ZP_20335156.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE174]
gi|433184295|ref|ZP_20368539.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE85]
gi|433189333|ref|ZP_20373428.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE88]
gi|433204263|ref|ZP_20388028.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE95]
gi|433208718|ref|ZP_20392391.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE97]
gi|433213502|ref|ZP_20397091.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE99]
gi|433323023|ref|ZP_20400393.1| 23S rRNA pseudouridine synthase D [Escherichia coli J96]
gi|433327003|ref|ZP_20403636.1| 23S rRNA pseudouridine synthase D [Escherichia coli J96]
gi|54039250|sp|P65835.2|RLUD_SHIFL RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|54041741|sp|P65834.2|RLUD_ECOL6 RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|26109363|gb|AAN81565.1|AE016764_247 Ribosomal large subunit pseudouridine synthase D [Escherichia coli
CFT073]
gi|24053038|gb|AAN44149.1| ftsH mutation suppressor [Shigella flexneri 2a str. 301]
gi|30042247|gb|AAP17972.1| ftsH mutation suppressor [Shigella flexneri 2a str. 2457T]
gi|73856630|gb|AAZ89337.1| suppressor of ftsH mutation [Shigella sonnei Ss046]
gi|110344349|gb|ABG70586.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
536]
gi|110616083|gb|ABF04750.1| suppressor of ftsH mutation [Shigella flexneri 5 str. 8401]
gi|190905152|gb|EDV64796.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
F11]
gi|218352951|emb|CAU98750.1| 23S rRNA pseudouridine synthase [Escherichia coli 55989]
gi|218361942|emb|CAQ99544.1| 23S rRNA pseudouridine synthase [Escherichia coli IAI1]
gi|281602002|gb|ADA74986.1| Ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2002017]
gi|284922542|emb|CBG35629.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
042]
gi|291468756|gb|EFF11247.1| rluD [Escherichia coli B354]
gi|300297834|gb|EFJ54219.1| pseudouridine synthase, RluA family [Escherichia coli MS 185-1]
gi|300308510|gb|EFJ63030.1| pseudouridine synthase, RluA family [Escherichia coli MS 200-1]
gi|300395569|gb|EFJ79107.1| pseudouridine synthase, RluA family [Escherichia coli MS 69-1]
gi|300407859|gb|EFJ91397.1| pseudouridine synthase, RluA family [Escherichia coli MS 45-1]
gi|300454823|gb|EFK18316.1| pseudouridine synthase, RluA family [Escherichia coli MS 21-1]
gi|305854524|gb|EFM54962.1| 23S rRNA pseudouridine synthase D [Escherichia coli NC101]
gi|313648270|gb|EFS12714.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2a str. 2457T]
gi|315290937|gb|EFU50302.1| pseudouridine synthase, RluA family [Escherichia coli MS 153-1]
gi|315298638|gb|EFU57893.1| pseudouridine synthase, RluA family [Escherichia coli MS 16-3]
gi|323184529|gb|EFZ69903.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
OK1357]
gi|323963904|gb|EGB59397.1| RluA family protein pseudouridine synthase [Escherichia coli M863]
gi|323978453|gb|EGB73537.1| RluA family protein pseudouridine synthase [Escherichia coli
TW10509]
gi|324012460|gb|EGB81679.1| pseudouridine synthase, RluA family [Escherichia coli MS 60-1]
gi|327252300|gb|EGE63972.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_7v]
gi|330912359|gb|EGH40869.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
AA86]
gi|331042085|gb|EGI14227.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli M605]
gi|331053326|gb|EGI25355.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA206]
gi|331058618|gb|EGI30596.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Escherichia coli TA143]
gi|332754015|gb|EGJ84387.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-671]
gi|332755617|gb|EGJ85980.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2747-71]
gi|332765571|gb|EGJ95784.1| 23S rRNA pseudouridine synthase [Shigella flexneri 2930-71]
gi|333015902|gb|EGK35238.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-304]
gi|335574330|gb|EGM60656.1| 23S rRNA pseudouridine synthase [Shigella flexneri J1713]
gi|340733534|gb|EGR62665.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
01-09591]
gi|340739437|gb|EGR73672.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
LB226692]
gi|341919974|gb|EGT69583.1| rluD [Escherichia coli O104:H4 str. C227-11]
gi|345357539|gb|EGW89733.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_DG131-3]
gi|354862443|gb|EHF22881.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. C236-11]
gi|354867727|gb|EHF28149.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. C227-11]
gi|354868125|gb|EHF28543.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 04-8351]
gi|354873724|gb|EHF34101.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 09-7901]
gi|354880408|gb|EHF40744.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-3677]
gi|354888532|gb|EHF48788.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4404]
gi|354892693|gb|EHF52899.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4522]
gi|354893760|gb|EHF53959.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354896840|gb|EHF57007.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4623]
gi|354898534|gb|EHF58688.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354912302|gb|EHF72303.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354915258|gb|EHF75238.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917146|gb|EHF77115.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355421262|gb|AER85459.1| 23S rRNA pseudouridine synthase D [Escherichia coli str. 'clone D
i2']
gi|355426182|gb|AER90378.1| 23S rRNA pseudouridine synthase D [Escherichia coli str. 'clone D
i14']
gi|373247407|gb|EHP66850.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
4_1_47FAA]
gi|378215993|gb|EHX76283.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC14A]
gi|378236558|gb|EHX96603.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15A]
gi|378243817|gb|EHY03763.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15B]
gi|378245356|gb|EHY05293.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15C]
gi|378252829|gb|EHY12707.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15D]
gi|378258570|gb|EHY18387.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15E]
gi|383467978|gb|EID62999.1| 23S rRNA pseudouridine synthase D [Shigella flexneri 5a str. M90T]
gi|386141208|gb|EIG82360.1| pseudouridine synthase, RluA family [Escherichia coli 1.2741]
gi|386200734|gb|EIH99724.1| pseudouridine synthase, RluA family [Escherichia coli 96.154]
gi|386251392|gb|EII97559.1| pseudouridine synthase, RluA family [Escherichia coli TW07793]
gi|388385296|gb|EIL46990.1| 23S rRNA pseudouridine synthase D [Escherichia coli KD2]
gi|388391519|gb|EIL52982.1| 23S rRNA pseudouridine synthase D [Escherichia coli KD1]
gi|388421158|gb|EIL80779.1| 23S rRNA pseudouridine synthase D [Escherichia coli CUMT8]
gi|391247095|gb|EIQ06351.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
2850-71]
gi|391264805|gb|EIQ23790.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-404]
gi|391283667|gb|EIQ42282.1| ribosomal large subunit pseudouridine synthase D [Shigella sonnei
3233-85]
gi|391316113|gb|EIQ73593.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
1235-66]
gi|406776577|gb|AFS56001.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407053146|gb|AFS73197.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066524|gb|AFS87571.1| 23S rRNA pseudouridine synthase D [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408212541|gb|EKI37063.1| pseudouridine synthase [Escherichia coli 07798]
gi|408456599|gb|EKJ80412.1| 23S rRNA pseudouridine synthase D [Escherichia coli AD30]
gi|429348331|gb|EKY85101.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02092]
gi|429359077|gb|EKY95743.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02030]
gi|429361408|gb|EKY98063.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02093]
gi|429361715|gb|EKY98368.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429364355|gb|EKZ00975.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02318]
gi|429375204|gb|EKZ11742.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02913]
gi|429376361|gb|EKZ12890.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-02281]
gi|429378670|gb|EKZ15178.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-03439]
gi|429379534|gb|EKZ16034.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-03943]
gi|429390669|gb|EKZ27078.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. 11-04080]
gi|429406137|gb|EKZ42398.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409056|gb|EKZ45287.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413386|gb|EKZ49573.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429416530|gb|EKZ52685.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429420240|gb|EKZ56370.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429428131|gb|EKZ64210.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429431553|gb|EKZ67600.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429436663|gb|EKZ72679.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429437567|gb|EKZ73570.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447237|gb|EKZ83161.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429451490|gb|EKZ87381.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429456750|gb|EKZ92594.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430895216|gb|ELC17487.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE11]
gi|430905162|gb|ELC26837.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE16]
gi|430907001|gb|ELC28505.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE15]
gi|430924189|gb|ELC44911.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE21]
gi|430934410|gb|ELC54772.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE39]
gi|430951680|gb|ELC70895.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE187]
gi|430962647|gb|ELC80504.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE188]
gi|430965487|gb|ELC82905.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE189]
gi|430973435|gb|ELC90403.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE191]
gi|430981149|gb|ELC97881.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE201]
gi|430993062|gb|ELD09421.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE205]
gi|430996979|gb|ELD13247.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE206]
gi|431006462|gb|ELD21468.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE210]
gi|431019264|gb|ELD32666.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE213]
gi|431023910|gb|ELD37105.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE214]
gi|431037411|gb|ELD48394.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE220]
gi|431041282|gb|ELD51813.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE224]
gi|431050647|gb|ELD60386.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE230]
gi|431059326|gb|ELD68684.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE234]
gi|431073598|gb|ELD81240.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE236]
gi|431078891|gb|ELD85870.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE237]
gi|431098771|gb|ELE04077.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE53]
gi|431121699|gb|ELE24578.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE57]
gi|431126884|gb|ELE29225.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE60]
gi|431137422|gb|ELE39269.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE67]
gi|431140272|gb|ELE42046.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE66]
gi|431147632|gb|ELE48986.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE72]
gi|431158221|gb|ELE58839.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE76]
gi|431179499|gb|ELE79399.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE86]
gi|431189558|gb|ELE88979.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE87]
gi|431189975|gb|ELE89391.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE93]
gi|431219522|gb|ELF16918.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE143]
gi|431242454|gb|ELF36871.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE169]
gi|431255425|gb|ELF48678.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE8]
gi|431261507|gb|ELF53541.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE9]
gi|431290739|gb|ELF81270.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE43]
gi|431309351|gb|ELF97551.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE48]
gi|431314010|gb|ELG01965.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE50]
gi|431328932|gb|ELG16236.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE63]
gi|431338745|gb|ELG25821.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE78]
gi|431350933|gb|ELG37734.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE79]
gi|431363454|gb|ELG50015.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE115]
gi|431387895|gb|ELG71700.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE140]
gi|431394008|gb|ELG77551.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE141]
gi|431425236|gb|ELH07307.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE192]
gi|431431292|gb|ELH13069.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE194]
gi|431462586|gb|ELH42796.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE183]
gi|431470085|gb|ELH50009.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE203]
gi|431472385|gb|ELH52274.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE202]
gi|431480657|gb|ELH60375.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE207]
gi|431487784|gb|ELH67427.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE209]
gi|431498856|gb|ELH78040.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE215]
gi|431504083|gb|ELH82813.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE218]
gi|431507561|gb|ELH85845.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE223]
gi|431529589|gb|ELI06287.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE104]
gi|431534095|gb|ELI10584.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE106]
gi|431542335|gb|ELI17506.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE109]
gi|431550432|gb|ELI24424.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE113]
gi|431568099|gb|ELI41088.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE124]
gi|431580229|gb|ELI52793.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE125]
gi|431586712|gb|ELI58099.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE129]
gi|431595515|gb|ELI65509.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE131]
gi|431600786|gb|ELI70452.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE133]
gi|431603840|gb|ELI73261.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE137]
gi|431617975|gb|ELI86958.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE145]
gi|431632985|gb|ELJ01268.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE153]
gi|431641477|gb|ELJ09215.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE157]
gi|431643350|gb|ELJ11047.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE160]
gi|431658894|gb|ELJ25802.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE167]
gi|431660630|gb|ELJ27498.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE168]
gi|431669571|gb|ELJ35990.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE174]
gi|431704985|gb|ELJ69608.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE88]
gi|431705029|gb|ELJ69649.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE85]
gi|431719713|gb|ELJ83764.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE95]
gi|431729351|gb|ELJ92983.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE97]
gi|431733806|gb|ELJ97211.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE99]
gi|432345134|gb|ELL39655.1| 23S rRNA pseudouridine synthase D [Escherichia coli J96]
gi|432348191|gb|ELL42642.1| 23S rRNA pseudouridine synthase D [Escherichia coli J96]
Length = 326
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|419921254|ref|ZP_14439311.1| 23S rRNA pseudouridine synthase D [Escherichia coli 541-15]
gi|388397949|gb|EIL58903.1| 23S rRNA pseudouridine synthase D [Escherichia coli 541-15]
Length = 326
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNQDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|260856684|ref|YP_003230575.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
11368]
gi|417300139|ref|ZP_12087366.1| pseudouridine synthase, RluA family [Escherichia coli 900105 (10e)]
gi|419210825|ref|ZP_13753901.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8C]
gi|419216872|ref|ZP_13759869.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8D]
gi|419233661|ref|ZP_13776434.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9B]
gi|419238962|ref|ZP_13781676.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9C]
gi|419244572|ref|ZP_13787208.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9D]
gi|419250239|ref|ZP_13792817.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9E]
gi|419262388|ref|ZP_13804801.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10B]
gi|419266282|ref|ZP_13808651.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10C]
gi|419878483|ref|ZP_14399950.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9534]
gi|419880950|ref|ZP_14402310.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9545]
gi|419904019|ref|ZP_14423029.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM9942]
gi|419906105|ref|ZP_14425037.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10026]
gi|420103375|ref|ZP_14614255.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9455]
gi|420110874|ref|ZP_14620774.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9553]
gi|420116851|ref|ZP_14626226.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10021]
gi|420124517|ref|ZP_14633368.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10030]
gi|420128966|ref|ZP_14637512.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10224]
gi|420135379|ref|ZP_14643466.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM9952]
gi|424751116|ref|ZP_18179158.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424761397|ref|ZP_18188978.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CFSAN001630]
gi|257755333|dbj|BAI26835.1| 23S rRNA pseudouridine synthase [Escherichia coli O26:H11 str.
11368]
gi|378052272|gb|EHW14581.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8C]
gi|378060303|gb|EHW22499.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8D]
gi|378076158|gb|EHW38170.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9B]
gi|378083067|gb|EHW45003.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9C]
gi|378089109|gb|EHW50956.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9D]
gi|378093518|gb|EHW55324.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9E]
gi|378104892|gb|EHW66544.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10B]
gi|378115055|gb|EHW76604.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10C]
gi|386256974|gb|EIJ12468.1| pseudouridine synthase, RluA family [Escherichia coli 900105 (10e)]
gi|388334876|gb|EIL01456.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9534]
gi|388366893|gb|EIL30602.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9545]
gi|388368480|gb|EIL32111.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM9942]
gi|388379913|gb|EIL42543.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10026]
gi|394384188|gb|EJE61755.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10224]
gi|394400712|gb|EJE76624.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9553]
gi|394402888|gb|EJE78572.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10021]
gi|394408130|gb|EJE82852.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CVM9455]
gi|394414752|gb|EJE88674.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM10030]
gi|394420117|gb|EJE93669.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CVM9952]
gi|421939966|gb|EKT97454.1| 23S rRNA pseudouridine synthase D [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421944371|gb|EKU01631.1| 23S rRNA pseudouridine synthase D [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 326
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISMLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|398865236|ref|ZP_10620758.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM78]
gi|398243760|gb|EJN29339.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM78]
Length = 320
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP +++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKNFPRQALHARFLELDHPTTGVRMSWESPLPEDFVWLLTL 310
>gi|303250129|ref|ZP_07336331.1| 23S rRNA pseudouridine synthase D [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252760|ref|ZP_07534651.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651192|gb|EFL81346.1| 23S rRNA pseudouridine synthase D [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859792|gb|EFM91814.1| Ribosomal large subunit pseudouridine synthase D [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 325
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ G+ G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAVASGVMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASEEFLAVLRGFQRQALHATMLRLEHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|333371293|ref|ZP_08463249.1| ribosomal large subunit pseudouridine synthase D, partial
[Desmospora sp. 8437]
gi|332976359|gb|EGK13213.1| ribosomal large subunit pseudouridine synthase D [Desmospora sp.
8437]
Length = 270
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 159/248 (64%), Gaps = 16/248 (6%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E+ + P++ + + + + L++++ED ++I++NK G+VVHPA G+ SGTL + LL
Sbjct: 26 EVAVPPPEEA----EVKPEALPLEVVFEDGDVIMVNKPRGMVVHPAPGSPSGTLVNALLA 81
Query: 67 IYPFLINVP---RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L + R GIVHR+DK++SGL++VAK+ ++ L QLK H V R+Y A+V G
Sbjct: 82 HCDDLSGIGGVLRPGIVHRIDKDTSGLIMVAKNDFAHRSLAAQLKNHTVDREYTALVQGN 141
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKT 181
IP G ++A I R+PH+R +M V ++ + KPA+T++E +I + +LIRC L+T
Sbjct: 142 IPHDRGTVDAPIGRDPHHRKRMAV-EHRHGKPAVTHFE-----VIERFSRATLIRCRLET 195
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINL 241
GRTHQIRVHM+ +GH +VGD +Y +Y + + QALHA LG HP+ ++ + +
Sbjct: 196 GRTHQIRVHMKSIGHPLVGDPVYSTRY-RDFPIDGQALHARLLGFDHPRTGERICRELEM 254
Query: 242 PDDISKLI 249
P+D+ L+
Sbjct: 255 PEDMRSLV 262
>gi|293415867|ref|ZP_06658507.1| rluD [Escherichia coli B185]
gi|417631234|ref|ZP_12281467.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_MHI813]
gi|432450727|ref|ZP_19692989.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE193]
gi|433034425|ref|ZP_20222132.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE112]
gi|291432056|gb|EFF05038.1| rluD [Escherichia coli B185]
gi|345369761|gb|EGX01742.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_MHI813]
gi|430979219|gb|ELC96005.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE193]
gi|431549280|gb|ELI23363.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE112]
Length = 326
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|399066658|ref|ZP_10748517.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
gi|398027820|gb|EJL21351.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
Length = 314
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 151/257 (58%), Gaps = 22/257 (8%)
Query: 11 IKPKKNFFLNKTEK-------KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
++P F + E + I L++++ED +I+++K AGLVVHPA GNL GTL +
Sbjct: 57 VEPGTPFAIEVPEAVAAEAIAQDIPLNVVFEDEYLIVVDKPAGLVVHPAAGNLDGTLVNA 116
Query: 64 LLE----IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
LL + V R GIVHR+DK++SGL+VVAK+ K++ L Q H + R YLA+
Sbjct: 117 LLHHCRGQLSGIGGVARPGIVHRIDKDTSGLLVVAKTDKAHEGLAVQFADHSIVRAYLAV 176
Query: 120 VWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
V G P + + AI R+PH+R KM + ++ K A+T++ + K +L+ C
Sbjct: 177 VGGRPMPMARTVTGAIARSPHDRKKMALVEDGRGKHAVTHFRTVEA----LKGATLVECR 232
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNN 232
L+TGRTHQ+RVHM +GH ++GD +YG+ S L F+RQALHA +LG +HP
Sbjct: 233 LETGRTHQVRVHMASIGHALLGDPVYGRTPSSLRAILSGLDFSRQALHAAELGFVHPVTG 292
Query: 233 LKLKWRINLPDDISKLI 249
+ + LPDD+ LI
Sbjct: 293 KNVHFASPLPDDMRTLI 309
>gi|417708675|ref|ZP_12357703.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
VA-6]
gi|420332494|ref|ZP_14834144.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-1770]
gi|332999362|gb|EGK18947.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
VA-6]
gi|391249325|gb|EIQ08560.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-1770]
Length = 326
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|123441245|ref|YP_001005232.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332160281|ref|YP_004296858.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386309635|ref|YP_006005691.1| ribosomal large subunit pseudouridine synthase D [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418243773|ref|ZP_12870227.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420257393|ref|ZP_14760153.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433551273|ref|ZP_20507316.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
enterocolitica IP 10393]
gi|122088206|emb|CAL10994.1| ribosomal large subunit pseudouridine synthase D [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|318604491|emb|CBY25989.1| ribosomal large subunit pseudouridine synthase D [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325664511|gb|ADZ41155.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330863600|emb|CBX73710.1| ribosomal large subunit pseudouridine synthase D [Yersinia
enterocolitica W22703]
gi|351776726|gb|EHB19024.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404515183|gb|EKA28958.1| 23S rRNA pseudouridine synthase D [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431788372|emb|CCO70356.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
enterocolitica IP 10393]
Length = 325
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|345300453|ref|YP_004829811.1| RluA family pseudouridine synthase [Enterobacter asburiae LF7a]
gi|345094390|gb|AEN66026.1| pseudouridine synthase, RluA family [Enterobacter asburiae LF7a]
Length = 326
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQDIPLEIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVELI 309
>gi|420374602|ref|ZP_14874566.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
1235-66]
gi|391316062|gb|EIQ73546.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
1235-66]
Length = 326
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|417231160|ref|ZP_12032558.1| pseudouridine synthase, RluA family [Escherichia coli 5.0959]
gi|419045842|ref|ZP_13592785.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3A]
gi|419056227|ref|ZP_13603067.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3C]
gi|419065815|ref|ZP_13612512.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3D]
gi|419074915|ref|ZP_13620461.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3F]
gi|419085875|ref|ZP_13631253.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4B]
gi|419094676|ref|ZP_13639952.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4C]
gi|419099389|ref|ZP_13644585.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4D]
gi|419105593|ref|ZP_13650719.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4E]
gi|419112770|ref|ZP_13657810.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4F]
gi|419121672|ref|ZP_13666620.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5B]
gi|419127127|ref|ZP_13672008.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5C]
gi|419137754|ref|ZP_13682545.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC5E]
gi|421813587|ref|ZP_16249304.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0416]
gi|421819403|ref|ZP_16254898.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
10.0821]
gi|425132992|ref|ZP_18533847.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.2524]
gi|425139498|ref|ZP_18539885.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
10.0833]
gi|425145291|ref|ZP_18545291.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
10.0869]
gi|425151403|ref|ZP_18551022.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
88.0221]
gi|425213115|ref|ZP_18608522.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA4]
gi|428954366|ref|ZP_19026173.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
88.1042]
gi|428960338|ref|ZP_19031652.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
89.0511]
gi|428966956|ref|ZP_19037683.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
90.0091]
gi|428984945|ref|ZP_19054349.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
93.0055]
gi|429003196|ref|ZP_19071329.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
95.0183]
gi|429053217|ref|ZP_19117755.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.1742]
gi|429068462|ref|ZP_19131937.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0672]
gi|429079601|ref|ZP_19142740.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0713]
gi|444926155|ref|ZP_21245455.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
09BKT078844]
gi|444931862|ref|ZP_21250906.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0814]
gi|444937313|ref|ZP_21256093.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0815]
gi|444948438|ref|ZP_21266752.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0839]
gi|444953973|ref|ZP_21272072.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0848]
gi|444986694|ref|ZP_21303478.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA11]
gi|444992008|ref|ZP_21308654.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA19]
gi|445002891|ref|ZP_21319283.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA2]
gi|445008330|ref|ZP_21324572.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA47]
gi|445013421|ref|ZP_21329531.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA48]
gi|445019290|ref|ZP_21335258.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA8]
gi|445024704|ref|ZP_21340531.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
7.1982]
gi|445030080|ref|ZP_21345758.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1781]
gi|445041172|ref|ZP_21356548.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA35]
gi|445057686|ref|ZP_21372547.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0670]
gi|377894384|gb|EHU58806.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3A]
gi|377903370|gb|EHU67663.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3D]
gi|377910930|gb|EHU75113.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3C]
gi|377926867|gb|EHU90794.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3F]
gi|377935032|gb|EHU98855.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4B]
gi|377938725|gb|EHV02490.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4C]
gi|377941237|gb|EHV04981.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4D]
gi|377946130|gb|EHV09817.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4E]
gi|377952144|gb|EHV15745.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4F]
gi|377965092|gb|EHV28520.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5B]
gi|377973633|gb|EHV36970.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5C]
gi|377982174|gb|EHV45426.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
DEC5E]
gi|386204159|gb|EII08670.1| pseudouridine synthase, RluA family [Escherichia coli 5.0959]
gi|408126934|gb|EKH57461.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA4]
gi|408578178|gb|EKK53707.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
10.0833]
gi|408580684|gb|EKK56071.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.2524]
gi|408590904|gb|EKK65365.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
10.0869]
gi|408595824|gb|EKK70030.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
88.0221]
gi|408600550|gb|EKK74391.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0416]
gi|408612017|gb|EKK85365.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
10.0821]
gi|427204153|gb|EKV74436.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
88.1042]
gi|427206036|gb|EKV76263.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
89.0511]
gi|427220328|gb|EKV89254.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
90.0091]
gi|427241614|gb|EKW09040.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
93.0055]
gi|427260082|gb|EKW26080.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
95.0183]
gi|427319005|gb|EKW80839.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0672]
gi|427323637|gb|EKW85196.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.1742]
gi|427328672|gb|EKW90030.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0713]
gi|444537637|gb|ELV17554.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0814]
gi|444539176|gb|ELV18957.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
09BKT078844]
gi|444547065|gb|ELV25701.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0815]
gi|444556906|gb|ELV34283.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0839]
gi|444562807|gb|ELV39848.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0848]
gi|444592736|gb|ELV67982.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA11]
gi|444606506|gb|ELV81118.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA19]
gi|444615133|gb|ELV89345.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA2]
gi|444622503|gb|ELV96455.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA47]
gi|444623396|gb|ELV97318.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA48]
gi|444629159|gb|ELW02872.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA8]
gi|444637978|gb|ELW11334.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
7.1982]
gi|444640432|gb|ELW13696.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1781]
gi|444653793|gb|ELW26497.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA35]
gi|444669331|gb|ELW41318.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0670]
Length = 300
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|15832711|ref|NP_311484.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
Sakai]
gi|168752065|ref|ZP_02777087.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4113]
gi|168758664|ref|ZP_02783671.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4401]
gi|168762387|ref|ZP_02787394.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4501]
gi|168771700|ref|ZP_02796707.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4486]
gi|168773478|ref|ZP_02798485.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4196]
gi|168778572|ref|ZP_02803579.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4076]
gi|168789497|ref|ZP_02814504.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC869]
gi|168801712|ref|ZP_02826719.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC508]
gi|195940189|ref|ZP_03085571.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
EC4024]
gi|208808732|ref|ZP_03251069.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4206]
gi|208812778|ref|ZP_03254107.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4045]
gi|208821085|ref|ZP_03261405.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4042]
gi|209396635|ref|YP_002272067.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
EC4115]
gi|217326855|ref|ZP_03442938.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. TW14588]
gi|254794542|ref|YP_003079379.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
TW14359]
gi|261227479|ref|ZP_05941760.1| 23S rRNA pseudouridine synthase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255673|ref|ZP_05948206.1| 23S rRNA pseudouridine synthase [Escherichia coli O157:H7 str.
FRIK966]
gi|291283867|ref|YP_003500685.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O55:H7 str. CB9615]
gi|387507959|ref|YP_006160215.1| 23S rRNA pseudouridine synthase D [Escherichia coli O55:H7 str.
RM12579]
gi|387883787|ref|YP_006314089.1| 23S rRNA pseudouridine synthase D [Escherichia coli Xuzhou21]
gi|416776086|ref|ZP_11874698.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
G5101]
gi|416787730|ref|ZP_11879612.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H- str.
493-89]
gi|416799414|ref|ZP_11884527.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H- str. H
2687]
gi|416809745|ref|ZP_11889210.1| 23S rRNA pseudouridine synthase D [Escherichia coli O55:H7 str.
3256-97]
gi|416820394|ref|ZP_11893769.1| 23S rRNA pseudouridine synthase D [Escherichia coli O55:H7 str.
USDA 5905]
gi|416831292|ref|ZP_11899057.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
LSU-61]
gi|419048719|ref|ZP_13595641.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3B]
gi|419070712|ref|ZP_13616332.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3E]
gi|419081792|ref|ZP_13627239.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4A]
gi|419132618|ref|ZP_13677453.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5D]
gi|420289357|ref|ZP_14791537.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW10246]
gi|420290343|ref|ZP_14792510.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW11039]
gi|423726321|ref|ZP_17700376.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA31]
gi|424091569|ref|ZP_17827510.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1996]
gi|424329349|ref|ZP_17896898.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA28]
gi|424450896|ref|ZP_17902609.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA32]
gi|424463537|ref|ZP_17913981.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA39]
gi|424482153|ref|ZP_17931140.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW07945]
gi|424488311|ref|ZP_17936886.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW09098]
gi|424494888|ref|ZP_17942611.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW09195]
gi|424507928|ref|ZP_17954331.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4196]
gi|424515249|ref|ZP_17959940.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW14313]
gi|424551903|ref|ZP_17993768.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4439]
gi|424564433|ref|ZP_18005441.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4437]
gi|425105319|ref|ZP_18507642.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
5.2239]
gi|425127260|ref|ZP_18528435.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0586]
gi|425163624|ref|ZP_18562516.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA506]
gi|425169367|ref|ZP_18567847.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA507]
gi|425175431|ref|ZP_18573556.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA504]
gi|425194500|ref|ZP_18591275.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
NE1487]
gi|425219236|ref|ZP_18614209.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA23]
gi|425237968|ref|ZP_18631693.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TT12B]
gi|425244185|ref|ZP_18637499.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
MA6]
gi|425256177|ref|ZP_18648703.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
CB7326]
gi|425268431|ref|ZP_18660066.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
5412]
gi|425324634|ref|ZP_18713010.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1737]
gi|425330999|ref|ZP_18718862.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1846]
gi|425337175|ref|ZP_18724555.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1847]
gi|425387004|ref|ZP_18770567.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1866]
gi|425395079|ref|ZP_18778173.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1868]
gi|425399793|ref|ZP_18782504.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1869]
gi|425405878|ref|ZP_18788107.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1870]
gi|425418591|ref|ZP_18799867.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK523]
gi|425429851|ref|ZP_18810469.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
0.1304]
gi|428972696|ref|ZP_19043043.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
90.0039]
gi|428979167|ref|ZP_19049001.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
90.2281]
gi|428991081|ref|ZP_19060079.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
93.0056]
gi|428996951|ref|ZP_19065556.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
94.0618]
gi|429009277|ref|ZP_19076802.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
95.1288]
gi|429015808|ref|ZP_19082710.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
95.0943]
gi|429021687|ref|ZP_19088219.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0428]
gi|429033932|ref|ZP_19099464.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0939]
gi|429039988|ref|ZP_19105106.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0932]
gi|429045891|ref|ZP_19110614.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0107]
gi|429051312|ref|ZP_19115882.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.0003]
gi|429062189|ref|ZP_19126212.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.0007]
gi|429074408|ref|ZP_19137663.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0678]
gi|429827624|ref|ZP_19358675.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0109]
gi|429833981|ref|ZP_19364340.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.0010]
gi|432948542|ref|ZP_20143593.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE196]
gi|433044143|ref|ZP_20231636.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE117]
gi|444942942|ref|ZP_21261463.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0816]
gi|444959496|ref|ZP_21277352.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1753]
gi|444964616|ref|ZP_21282226.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1775]
gi|444970629|ref|ZP_21287995.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1793]
gi|444975914|ref|ZP_21293041.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1805]
gi|444981299|ref|ZP_21298213.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
ATCC 700728]
gi|444997319|ref|ZP_21313819.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA13]
gi|445035547|ref|ZP_21351082.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1762]
gi|445046401|ref|ZP_21361654.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3.4880]
gi|452967747|ref|ZP_21965974.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
EC4009]
gi|34395799|sp|Q8X9F0.3|RLUD_ECO57 RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|13362928|dbj|BAB36880.1| suppressor of ftsH mutation [Escherichia coli O157:H7 str. Sakai]
gi|187770638|gb|EDU34482.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4196]
gi|188014009|gb|EDU52131.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4113]
gi|189003176|gb|EDU72162.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4076]
gi|189354550|gb|EDU72969.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4401]
gi|189359603|gb|EDU78022.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4486]
gi|189367297|gb|EDU85713.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4501]
gi|189370886|gb|EDU89302.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC869]
gi|189376176|gb|EDU94592.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC508]
gi|208728533|gb|EDZ78134.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4206]
gi|208734055|gb|EDZ82742.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4045]
gi|208741208|gb|EDZ88890.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4042]
gi|209158035|gb|ACI35468.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. EC4115]
gi|209762678|gb|ACI79651.1| suppressor of ftsH mutation [Escherichia coli]
gi|209762680|gb|ACI79652.1| suppressor of ftsH mutation [Escherichia coli]
gi|209762682|gb|ACI79653.1| suppressor of ftsH mutation [Escherichia coli]
gi|209762684|gb|ACI79654.1| suppressor of ftsH mutation [Escherichia coli]
gi|209762686|gb|ACI79655.1| suppressor of ftsH mutation [Escherichia coli]
gi|217319222|gb|EEC27647.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
O157:H7 str. TW14588]
gi|254593942|gb|ACT73303.1| 23S rRNA pseudouridine synthase [Escherichia coli O157:H7 str.
TW14359]
gi|290763740|gb|ADD57701.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
O55:H7 str. CB9615]
gi|320640778|gb|EFX10276.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
G5101]
gi|320646123|gb|EFX15068.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H- str.
493-89]
gi|320651420|gb|EFX19821.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H- str. H
2687]
gi|320657025|gb|EFX24848.1| 23S rRNA pseudouridine synthase D [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662689|gb|EFX30033.1| 23S rRNA pseudouridine synthase D [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667506|gb|EFX34430.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
LSU-61]
gi|374359953|gb|AEZ41660.1| 23S rRNA pseudouridine synthase D [Escherichia coli O55:H7 str.
RM12579]
gi|377903358|gb|EHU67654.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3B]
gi|377911232|gb|EHU75406.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3E]
gi|377924763|gb|EHU88704.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4A]
gi|377974767|gb|EHV38093.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5D]
gi|386797245|gb|AFJ30279.1| 23S rRNA pseudouridine synthase D [Escherichia coli Xuzhou21]
gi|390640879|gb|EIN20323.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK1996]
gi|390726357|gb|EIN98807.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA28]
gi|390741497|gb|EIO12564.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA31]
gi|390741949|gb|EIO12976.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA32]
gi|390767736|gb|EIO36803.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA39]
gi|390786828|gb|EIO54330.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW10246]
gi|390789767|gb|EIO57211.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW07945]
gi|390802308|gb|EIO69349.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW11039]
gi|390804616|gb|EIO71574.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW09098]
gi|390829327|gb|EIO94929.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW09195]
gi|390830183|gb|EIO95743.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4196]
gi|390845734|gb|EIP09361.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TW14313]
gi|390877868|gb|EIP38759.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4439]
gi|390892587|gb|EIP52162.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC4437]
gi|408078500|gb|EKH12652.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA506]
gi|408082394|gb|EKH16377.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA507]
gi|408090878|gb|EKH24131.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FDA504]
gi|408108046|gb|EKH40084.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
NE1487]
gi|408137167|gb|EKH66881.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA23]
gi|408154479|gb|EKH82820.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
TT12B]
gi|408159348|gb|EKH87420.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
MA6]
gi|408172761|gb|EKH99815.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
CB7326]
gi|408182303|gb|EKI08819.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
5412]
gi|408241830|gb|EKI64441.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1737]
gi|408246118|gb|EKI68427.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1846]
gi|408254869|gb|EKI76337.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1847]
gi|408303677|gb|EKJ21131.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1868]
gi|408307248|gb|EKJ24591.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1866]
gi|408318095|gb|EKJ34311.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1869]
gi|408324294|gb|EKJ40228.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EC1870]
gi|408335941|gb|EKJ50751.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
FRIK523]
gi|408345645|gb|EKJ59960.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
0.1304]
gi|408549019|gb|EKK26387.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
5.2239]
gi|408568199|gb|EKK44236.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
8.0586]
gi|427223694|gb|EKV92425.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
90.2281]
gi|427227494|gb|EKV96045.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
90.0039]
gi|427241217|gb|EKW08659.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
93.0056]
gi|427245215|gb|EKW12511.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
94.0618]
gi|427260743|gb|EKW26707.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
95.0943]
gi|427264043|gb|EKW29742.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
95.1288]
gi|427275874|gb|EKW40467.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0428]
gi|427282429|gb|EKW46679.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0939]
gi|427291328|gb|EKW54742.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0932]
gi|427298442|gb|EKW61444.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0107]
gi|427299921|gb|EKW62882.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.0003]
gi|427314742|gb|EKW76773.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.0007]
gi|427327346|gb|EKW88739.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0678]
gi|429253086|gb|EKY37582.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0109]
gi|429254797|gb|EKY39164.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
97.0010]
gi|431456103|gb|ELH36448.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE196]
gi|431555158|gb|ELI29014.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE117]
gi|444557508|gb|ELV34841.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.0816]
gi|444572409|gb|ELV48838.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1753]
gi|444576330|gb|ELV52520.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1775]
gi|444578807|gb|ELV54839.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1793]
gi|444592784|gb|ELV68025.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
ATCC 700728]
gi|444594600|gb|ELV69765.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1805]
gi|444605842|gb|ELV80472.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
PA13]
gi|444644718|gb|ELW17820.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
99.1762]
gi|444659181|gb|ELW31608.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3.4880]
Length = 326
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|398795522|ref|ZP_10555373.1| pseudouridine synthase, RluA family [Pantoea sp. YR343]
gi|398206175|gb|EJM92946.1| pseudouridine synthase, RluA family [Pantoea sp. YR343]
Length = 326
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 153/265 (57%), Gaps = 30/265 (11%)
Query: 9 IIIKPKKNFF-------------LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
II KPK+ F + E + I L+I+YED++I+++NK GLVVHP GN
Sbjct: 51 IIDKPKEKVFGGEHVSIDAEIEEEQRWEAQNIPLNIVYEDDDILVINKPRGLVVHPGAGN 110
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL YP + +VPRAGIVHRLDK+++GLMVVAK++ + HLV L++ + R+
Sbjct: 111 PDGTVLNALLYHYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVETLQLREITRE 170
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
Y A+ G G ++ + R+ R M V KPA T+Y R+ + H L
Sbjct: 171 YEAVAIGTMTAGGTVDQPMARHSTKRTHMAVHP--MGKPATTHY-RIMEHF--RAHTRL- 224
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKL 224
R L+TGRTHQIRVHM + H +VGD LYG K S++ I F+RQALHA L
Sbjct: 225 RLRLETGRTHQIRVHMAHINHPLVGDPLYGGRPRPPKGASEAFITTLRGFDRQALHATML 284
Query: 225 GLIHPKNNLKLKWRINLPDDISKLI 249
L HP ++++W LP D+ LI
Sbjct: 285 RLYHPITGIEMEWHAPLPQDMVDLI 309
>gi|419115982|ref|ZP_13660997.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5A]
gi|425111334|ref|ZP_18513259.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
6.0172]
gi|377959334|gb|EHV22830.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5A]
gi|408550252|gb|EKK27590.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
6.0172]
Length = 303
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 55 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 114
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 115 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 174
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 175 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 228
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 229 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 286
>gi|386620193|ref|YP_006139773.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
NA114]
gi|415840103|ref|ZP_11521619.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
RN587/1]
gi|417280685|ref|ZP_12067985.1| pseudouridine synthase, RluA family [Escherichia coli 3003]
gi|418997976|ref|ZP_13545567.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1A]
gi|419003148|ref|ZP_13550671.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1B]
gi|419035733|ref|ZP_13582818.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2D]
gi|323188383|gb|EFZ73674.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
RN587/1]
gi|333970694|gb|AEG37499.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
NA114]
gi|377842661|gb|EHU07711.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1A]
gi|377846547|gb|EHU11558.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1B]
gi|377878904|gb|EHU43483.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2D]
gi|386245014|gb|EII86744.1| pseudouridine synthase, RluA family [Escherichia coli 3003]
Length = 300
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|415811831|ref|ZP_11504144.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
LT-68]
gi|415845851|ref|ZP_11525252.1| ribosomal large subunit pseudouridine synthase D [Shigella sonnei
53G]
gi|417134376|ref|ZP_11979161.1| pseudouridine synthase, RluA family [Escherichia coli 5.0588]
gi|417603266|ref|ZP_12253834.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_94C]
gi|417713891|ref|ZP_12362854.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-272]
gi|417718516|ref|ZP_12367410.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-227]
gi|418257810|ref|ZP_12881287.1| 23S rRNA pseudouridine synthase [Shigella flexneri 6603-63]
gi|418267388|ref|ZP_12886609.1| 23S rRNA pseudouridine synthase [Shigella sonnei str. Moseley]
gi|420361391|ref|ZP_14862330.1| ribosomal large subunit pseudouridine synthase D [Shigella sonnei
3226-85]
gi|420364478|ref|ZP_14865356.1| 23S rRNA pseudouridine synthase [Shigella sonnei 4822-66]
gi|442604748|ref|ZP_21019592.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
Nissle 1917]
gi|323167770|gb|EFZ53465.1| ribosomal large subunit pseudouridine synthase D [Shigella sonnei
53G]
gi|323173090|gb|EFZ58721.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
LT-68]
gi|333001156|gb|EGK20726.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-272]
gi|333015794|gb|EGK35131.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-227]
gi|345349286|gb|EGW81573.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
STEC_94C]
gi|386152230|gb|EIH03519.1| pseudouridine synthase, RluA family [Escherichia coli 5.0588]
gi|391277114|gb|EIQ35870.1| ribosomal large subunit pseudouridine synthase D [Shigella sonnei
3226-85]
gi|391293393|gb|EIQ51675.1| 23S rRNA pseudouridine synthase [Shigella sonnei 4822-66]
gi|397896129|gb|EJL12549.1| 23S rRNA pseudouridine synthase [Shigella flexneri 6603-63]
gi|397898402|gb|EJL14786.1| 23S rRNA pseudouridine synthase [Shigella sonnei str. Moseley]
gi|441714331|emb|CCQ05569.1| Ribosomal large subunit pseudouridine synthase D [Escherichia coli
Nissle 1917]
Length = 300
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|90417173|ref|ZP_01225100.1| Pseudouridine synthase, RluD [gamma proteobacterium HTCC2207]
gi|90330949|gb|EAS46210.1| Pseudouridine synthase, RluD [marine gamma proteobacterium
HTCC2207]
Length = 324
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 19/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I++ED II++NK VVHPA GN GTL + LL P L +VPRAGIVHR
Sbjct: 87 QAEDIPLNIVFEDEHIIVINKPTNFVVHPAAGNREGTLLNALLFHCPQLKSVPRAGIVHR 146
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ ++ LV QL+ V R+Y ++V G+ G+++ I R+P R+
Sbjct: 147 LDKDTTGLMVVAKTLAAHTDLVAQLQARTVSREYESVVSGVMTGGGLVDQPIGRHPKQRV 206
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V + + K A T+Y+ ++ + + IR L+TGRTHQIRVHM + + IVGD
Sbjct: 207 KMAVVR--DGKEARTHYK-----VVKRFDGHTYIRLKLETGRTHQIRVHMASIKYPIVGD 259
Query: 202 NLYGKKY------SKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ YG ++ S L F RQALHA LGL+HP + + W LP+D+ L+
Sbjct: 260 DTYGGRFRIHKGVSDQLRDSLQYFGRQALHARALGLVHPASGEYVNWETELPEDMQNLL 318
>gi|238752927|ref|ZP_04614389.1| Ribosomal large subunit pseudouridine synthase D [Yersinia rohdei
ATCC 43380]
gi|238708835|gb|EEQ01091.1| Ribosomal large subunit pseudouridine synthase D [Yersinia rohdei
ATCC 43380]
Length = 325
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFISILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|410092211|ref|ZP_11288744.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
viridiflava UASWS0038]
gi|409760453|gb|EKN45599.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
viridiflava UASWS0038]
Length = 320
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPITGKRMSWESPLPDDFVWLLSL 310
>gi|357008383|ref|ZP_09073382.1| YlyB [Paenibacillus elgii B69]
Length = 317
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 159/253 (62%), Gaps = 17/253 (6%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
G + ++ P+ + E I LD++YED+++I++NK G+VVHPA G+ SGTL +
Sbjct: 69 EGDAMTLVMPEPEELVLTPEP--IALDVVYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNA 126
Query: 64 LLEIYPFL--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
LL L IN V R GIVHR+DK++SGL++ AK+ ++ L QLK H V RKY A+V
Sbjct: 127 LLYHCKDLSGINGVIRPGIVHRIDKDTSGLLMAAKNDLAHSGLAAQLKAHTVNRKYFALV 186
Query: 121 WG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIR 176
G +P NG ++A I R+P +R TV++ N+K A+T++ ER +L+
Sbjct: 187 HGNVPHENGTVDAPIGRDPKDRKLYTVTER-NSKHAVTHFLVLERFGD-------YTLLE 238
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLK 236
L+TGRTHQIRVHM+++GH +VGD YG SK ++ QALHA LG HP++ +L+
Sbjct: 239 LKLETGRTHQIRVHMKFIGHPLVGDPAYGPSKSKGVLMEGQALHAAVLGFEHPRSGAELQ 298
Query: 237 WRINLPDDISKLI 249
+ +PDD+ +L+
Sbjct: 299 FEAPIPDDMQRLL 311
>gi|429085708|ref|ZP_19148671.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
condimenti 1330]
gi|426545028|emb|CCJ74712.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
condimenti 1330]
Length = 300
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 226 LYGGRPRPPKGASDEFIQTLRKFDRQALHATMLRLYHPVSGIMMEWHAPIPQDMIDLI 283
>gi|415804082|ref|ZP_11500848.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E128010]
gi|415822345|ref|ZP_11510973.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
OK1180]
gi|417122297|ref|ZP_11971555.1| pseudouridine synthase, RluA family [Escherichia coli 97.0246]
gi|417176458|ref|ZP_12006254.1| pseudouridine synthase, RluA family [Escherichia coli 3.2608]
gi|417189176|ref|ZP_12012734.1| pseudouridine synthase, RluA family [Escherichia coli 4.0522]
gi|417214352|ref|ZP_12022899.1| pseudouridine synthase, RluA family [Escherichia coli JB1-95]
gi|417239352|ref|ZP_12036368.1| pseudouridine synthase, RluA family [Escherichia coli 9.0111]
gi|419219052|ref|ZP_13762018.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8E]
gi|419366358|ref|ZP_13907516.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13E]
gi|419376530|ref|ZP_13917553.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14B]
gi|419806261|ref|ZP_14331374.1| pseudouridine synthase, RluA family [Escherichia coli AI27]
gi|323159115|gb|EFZ45108.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E128010]
gi|323177278|gb|EFZ62866.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
OK1180]
gi|378074648|gb|EHW36681.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8E]
gi|378211849|gb|EHX72182.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13E]
gi|378218077|gb|EHX78349.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14B]
gi|384470762|gb|EIE54860.1| pseudouridine synthase, RluA family [Escherichia coli AI27]
gi|386147577|gb|EIG94017.1| pseudouridine synthase, RluA family [Escherichia coli 97.0246]
gi|386179150|gb|EIH56629.1| pseudouridine synthase, RluA family [Escherichia coli 3.2608]
gi|386192721|gb|EIH81445.1| pseudouridine synthase, RluA family [Escherichia coli 4.0522]
gi|386194072|gb|EIH88333.1| pseudouridine synthase, RluA family [Escherichia coli JB1-95]
gi|386213086|gb|EII23519.1| pseudouridine synthase, RluA family [Escherichia coli 9.0111]
Length = 300
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISMLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|237729509|ref|ZP_04559990.1| 23S rRNA pseudouridine synthase D [Citrobacter sp. 30_2]
gi|365101804|ref|ZP_09332434.1| ribosomal large subunit pseudouridine synthase D [Citrobacter
freundii 4_7_47CFAA]
gi|226908115|gb|EEH94033.1| 23S rRNA pseudouridine synthase D [Citrobacter sp. 30_2]
gi|363647354|gb|EHL86583.1| ribosomal large subunit pseudouridine synthase D [Citrobacter
freundii 4_7_47CFAA]
Length = 326
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVQLI 309
>gi|432802781|ref|ZP_20036750.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE84]
gi|431347923|gb|ELG34800.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE84]
Length = 326
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQNIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|381395265|ref|ZP_09920969.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379329074|dbj|GAB56102.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 328
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 152/256 (59%), Gaps = 19/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E++I + N+ ++ I L+I+YED++I+++NK A VVHP GN SGT+ + L
Sbjct: 65 GEEIVISAEQAVQVFNEAQE--ITLNIVYEDDDILVINKPANFVVHPGAGNPSGTILNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP + +PRAGIVHRLDK+++GLMVVAK++ + LVNQL+ I+ R+Y A+V G
Sbjct: 123 LSHYPAIEKIPRAGIVHRLDKDTTGLMVVAKTLSAQTSLVNQLQERIMGREYEAVVLGNM 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G + A I R+ R M V + + KPA+T+Y R+ H +R L+TGRT
Sbjct: 183 IAGGTVEANIGRHQTKRTLMDVRE--SGKPAVTHY-RVKHKYRAHTH---LRLKLETGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM ++ H IVGD YG K S+ I F RQALHA KL L HP
Sbjct: 237 HQIRVHMTYINHPIVGDIHYGGRPRLPKNASEEFITMLRGFKRQALHAIKLSLSHPTTGK 296
Query: 234 KLKWRINLPDDISKLI 249
+ W + +P D L+
Sbjct: 297 VMTWEVPIPSDFEALL 312
>gi|387120578|ref|YP_006286461.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415758832|ref|ZP_11481593.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416031179|ref|ZP_11572435.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416045172|ref|ZP_11575267.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416067419|ref|ZP_11582295.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429734967|ref|ZP_19268964.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995653|gb|EGY36814.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348002121|gb|EGY42832.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002169|gb|EGY42879.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655213|gb|EGY70687.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875070|gb|AFI86629.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429150733|gb|EKX93629.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans Y4]
Length = 324
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 146/245 (59%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGMVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMSVLRNFKRQALHAVMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|21243943|ref|NP_643525.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. citri str. 306]
gi|294625813|ref|ZP_06704430.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|381172707|ref|ZP_09881828.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|390992104|ref|ZP_10262349.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|418518408|ref|ZP_13084554.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
gi|418521491|ref|ZP_13087534.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
gi|34395784|sp|Q8PHN2.1|RLUD_XANAC RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|21109553|gb|AAM38061.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. citri str. 306]
gi|292599888|gb|EFF44008.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|372553153|emb|CCF69324.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|380686832|emb|CCG38315.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|410702336|gb|EKQ60842.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
gi|410703727|gb|EKQ62216.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
Length = 331
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 144/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN TL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMT 316
>gi|421080489|ref|ZP_15541410.1| 23S rRNA pseudouridine synthase [Pectobacterium wasabiae CFBP 3304]
gi|401704778|gb|EJS94980.1| 23S rRNA pseudouridine synthase [Pectobacterium wasabiae CFBP 3304]
Length = 325
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVEQPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L HP ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGSSDDFIETLRGFDRQALHATMLRFYHPITGIQMEWHAALPQDMVDLI 309
>gi|398913138|ref|ZP_10656311.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM49]
gi|398931124|ref|ZP_10664983.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM48]
gi|426411551|ref|YP_007031650.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
UW4]
gi|398164267|gb|EJM52409.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM48]
gi|398181099|gb|EJM68670.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM49]
gi|426269768|gb|AFY21845.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
UW4]
Length = 320
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPEDFVWLLTL 310
>gi|383188696|ref|YP_005198824.1| RluA family pseudouridine synthase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371586954|gb|AEX50684.1| pseudouridine synthase, RluA family [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 325
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 141/234 (60%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +I+++NK LVVHP GN GT+ + LL YP +I+VPR GIVHRLDK+
Sbjct: 82 IALDIVYEDTDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAIIDVPRCGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMV+AKS+ + HLV L+ + R+Y A+ G G +N I R+ R M V
Sbjct: 142 TTGLMVIAKSVPAQTHLVTALQAREITREYEAVAIGTMTAGGTVNEPIARHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L++GRTHQIRVHM + H ++GD LYG
Sbjct: 202 --HPTGKPATTHY-RIMEHF--RAHTRL-RLRLESGRTHQIRVHMAHINHPLLGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S+S I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 256 RPRLPKGASESFINMLRGFDRQALHATMLRLYHPVTGIQMEWHAPIPQDMVDLI 309
>gi|253689512|ref|YP_003018702.1| RluA family pseudouridine synthase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756090|gb|ACT14166.1| pseudouridine synthase, RluA family [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 325
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVDQPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG + S++ I F+RQALHA L HP + ++W LP D+ LI
Sbjct: 252 LYGGRPRPPRGASEAFIETLRGFDRQALHATMLRFYHPITGIHMEWHAELPQDMVDLI 309
>gi|332185831|ref|ZP_08387578.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
gi|332014189|gb|EGI56247.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
Length = 315
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 147/239 (61%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAG 78
E + I L I YED +I+++K AGLVVHPA GNL GTL + LL ++ V R G
Sbjct: 79 EAQDIPLVIAYEDEHLIVIDKPAGLVVHPAAGNLDGTLVNALLHYCGGSLSGIGGVARPG 138
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRN 137
IVHR+DK++SGLMV AK+ +++ L Q H + R+Y A+ GIP+ +G ++A + R+
Sbjct: 139 IVHRIDKDTSGLMVAAKTDRTHEGLAKQFAAHSIDRRYRAITGGIPRPADGTVDAPLARS 198
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
P NR K+ + + K A+T+Y I + +L+ C L+TGRTHQ+RVHMQ LGH
Sbjct: 199 PQNRKKVAIVQG--GKRAVTHYRT----IEKLNNAALVECRLETGRTHQVRVHMQSLGHA 252
Query: 198 IVGDNLYG--KKYSKSLI----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
++GD +YG K K+L+ F RQALHA LG IHP + L + +P D+ +L +
Sbjct: 253 LLGDPVYGRTKGAQKALLDELDFRRQALHAAHLGFIHPISGNALAFESPMPADMQELFS 311
>gi|392307909|ref|ZP_10270443.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas citrea NCIMB
1889]
Length = 325
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 144/236 (61%), Gaps = 18/236 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NKS GLVVHP GN GT+ + LL +P +INVPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDDDILVINKSMGLVVHPGAGNPDGTVLNALLHHHPDIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I++ HLV L+ R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIQAQTHLVKNLQARENFTREYEALCNGTMTAGGMVEKPIGRHATKR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M + + KPA+T+Y R+A + H L R L+TGRTHQIRVHM L H ++GD
Sbjct: 198 THMAIHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAHLNHPLIGD 251
Query: 202 NLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
LYG + +++ F RQALHA KL + HP + W +PDD+
Sbjct: 252 QLYGGRPRPPRNATPELFAQLRDFKRQALHAIKLSIAHPITGEVMTWEAPIPDDMQ 307
>gi|425100567|ref|ZP_18503288.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3.4870]
gi|429027742|ref|ZP_19093754.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0427]
gi|408545465|gb|EKK22895.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3.4870]
gi|427278329|gb|EKW42794.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
96.0427]
Length = 316
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 68 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 127
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 128 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 187
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 188 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 241
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 242 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 299
>gi|194435119|ref|ZP_03067355.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 1012]
gi|417673461|ref|ZP_12322913.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 155-74]
gi|194416650|gb|EDX32783.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 1012]
gi|332089232|gb|EGI94339.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 155-74]
Length = 326
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHMR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|415784646|ref|ZP_11492467.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EPECa14]
gi|419224615|ref|ZP_13767513.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9A]
gi|419256080|ref|ZP_13798592.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10A]
gi|419273830|ref|ZP_13816124.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10D]
gi|419285294|ref|ZP_13827464.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10F]
gi|323156250|gb|EFZ42409.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
EPECa14]
gi|378084057|gb|EHW45984.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9A]
gi|378099277|gb|EHW60985.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10A]
gi|378115527|gb|EHW77066.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10D]
gi|378130262|gb|EHW91630.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10F]
Length = 300
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISMLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|162533081|ref|YP_001621404.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213971041|ref|ZP_03399161.1| Ribosomal large subunit pseudouridine synthase D(Pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
tomato T1]
gi|301384235|ref|ZP_07232653.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. tomato Max13]
gi|302059468|ref|ZP_07251009.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. tomato K40]
gi|302134990|ref|ZP_07260980.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422591480|ref|ZP_16666123.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422653311|ref|ZP_16716079.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|422659774|ref|ZP_16722196.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|118201618|gb|ABK79681.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213924149|gb|EEB57724.1| Ribosomal large subunit pseudouridine synthase D(Pseudouridine
synthase) (Uracil hydrolyase) [Pseudomonas syringae pv.
tomato T1]
gi|330878989|gb|EGH13138.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330966362|gb|EGH66622.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|331018389|gb|EGH98445.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 320
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 81 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHVNYPLVGDPAYGG 254
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 255 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPITGKRMSWESPLPDDFVWLLSL 310
>gi|406938901|gb|EKD72032.1| hypothetical protein ACD_46C00028G0002 [uncultured bacterium]
Length = 325
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 3 ISGYELIIIKPKKNFFLNKT-EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
I G E+I + ++ ++ T E + I L I+YED III+NK GLVVHP GN + TL
Sbjct: 63 IKGNEVITVDVERK--IDPTWEAQKIPLPIVYEDEAIIIINKPVGLVVHPGAGNKNNTLL 120
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ L+ P L +PRAGI+HR+DK++SGL+V+AK+ ++ HL QLK +QR+Y A+V+
Sbjct: 121 NALIYHAPQLKLLPRAGIIHRIDKDTSGLLVIAKTAEALKHLSQQLKNRTIQREYQAVVY 180
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G ++A I R+P R +M + + + A+T+Y R+A + H L+ L+T
Sbjct: 181 GAMISGGTVDAPIDRHPIERKRMAIVE--TGRQAVTHY-RIAEKF--RAHTRLM-LKLET 234
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM ++ H IVGD YG K S LI F RQALHA++LG IHP
Sbjct: 235 GRTHQIRVHMAYIQHPIVGDPTYGGKVQLAKGMSTELIQLMRQFKRQALHAFRLGFIHPL 294
Query: 231 NNLKLKWRINLPDDISKLI 249
+N + + I LPDD+ L+
Sbjct: 295 SNEFVSFEIELPDDMQVLV 313
>gi|375109101|ref|ZP_09755355.1| 23S rRNA pseudouridine synthase D [Alishewanella jeotgali KCTC
22429]
gi|374571287|gb|EHR42416.1| 23S rRNA pseudouridine synthase D [Alishewanella jeotgali KCTC
22429]
Length = 324
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 152/260 (58%), Gaps = 23/260 (8%)
Query: 2 IISGYELIIIK--PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGT 59
++ G ++ I+ P++ F + + I LDI++ED I+++NK A LVVHP GN GT
Sbjct: 59 MLGGEQIDILAELPEEERF----DAEPIALDIVFEDEHILVINKPADLVVHPGAGNQDGT 114
Query: 60 LFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
L + LL P + VPRAGIVHRLDK+++GLMV+AK+I + HLV ++ + R+Y A+
Sbjct: 115 LLNALLHHCPGIAEVPRAGIVHRLDKDTTGLMVIAKTIPAQTHLVEAMQAREITREYEAV 174
Query: 120 VWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
+G G + I R+ R M V N N KPA+T+Y + + H L R L
Sbjct: 175 CYGTMTGGGTVKQPIGRHQTKRTLMAV--NENGKPAVTHYRVMEK---YRAHTRL-RLRL 228
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIH 228
+TGRTHQIRVHM ++ H +VGD +YG ++ S+ L+ F RQALHA L L H
Sbjct: 229 ETGRTHQIRVHMTFISHPLVGDPVYGGRPRPPRQASEQLLQLMRNFKRQALHAIMLKLAH 288
Query: 229 PKNNLKLKWRINLPDDISKL 248
P L+W LPDD+ L
Sbjct: 289 PITGQLLEWHAPLPDDMVAL 308
>gi|406980214|gb|EKE01848.1| hypothetical protein ACD_21C00034G0002 [uncultured bacterium]
Length = 315
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 149/245 (60%), Gaps = 23/245 (9%)
Query: 19 LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78
++ + + I LD+IYED +II++NK GLV+HP G T+ + LL YP L N+PRAG
Sbjct: 76 ISTQQPQPIALDVIYEDLDIIVINKPVGLVIHPGAGQADNTMLNALLYRYPELANLPRAG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
I+HRLDK++SGL+VV +S+ ++ L L+ ++R+Y+A+V G+ G I A I R+P
Sbjct: 136 IIHRLDKDTSGLLVVTRSLMAHTKLSADLQARKIKREYVAIVNGVINSGGTIEAPIGRHP 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHI---SLIRCNLKTGRTHQIRVHMQWLG 195
R M V + KPA T+Y + KH + +R L TGRTHQIRVH+ +G
Sbjct: 196 IKRTHMAVKS--SGKPATTHYRII-------KHFPAHTYLRVILDTGRTHQIRVHLAHIG 246
Query: 196 HGIVGDNLYGK------KYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
+ IVGD YGK K S +L F RQALHA +LG +HP+ ++W + LP+D
Sbjct: 247 YPIVGDPTYGKGARIPAKCSDALKQTLQQFKRQALHAQRLGFMHPRTGKLMEWEVILPED 306
Query: 245 ISKLI 249
+ KL+
Sbjct: 307 MEKLL 311
>gi|398896330|ref|ZP_10647459.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM55]
gi|398178590|gb|EJM66235.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM55]
Length = 320
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKNFPRQALHARFLELDHPTTGQRMSWESPLPEDFVWLLTL 310
>gi|227329204|ref|ZP_03833228.1| 23S rRNA pseudouridine synthase D [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 325
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVEQPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ I F+RQALHA L HP + ++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEDFIEMLRGFDRQALHATMLRFYHPITGIHMEWHAELPQDMVDLI 309
>gi|283835694|ref|ZP_06355435.1| ribosomal large subunit pseudouridine synthase D [Citrobacter
youngae ATCC 29220]
gi|291068911|gb|EFE07020.1| ribosomal large subunit pseudouridine synthase D [Citrobacter
youngae ATCC 29220]
Length = 326
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|399052196|ref|ZP_10741761.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|433545647|ref|ZP_20501997.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
gi|398050062|gb|EJL42452.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|432183045|gb|ELK40596.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
Length = 309
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 152/232 (65%), Gaps = 17/232 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
+ L+I+YED++++++NK GLVVHPA G+ SGTL + LL L IN V R GIVHR+
Sbjct: 84 MPLEIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHCKDLSGINGVLRPGIVHRI 143
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK+ K+++ L QLK H V R Y+A+V G IP G I+A I R+P NR
Sbjct: 144 DKDTSGLLMVAKNDKAHVGLAEQLKEHSVTRTYVAIVHGVIPHEMGTIDAPIGRDPKNRQ 203
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+M V N+KPA+T++ ER K +L+ L+TGRTHQIRVHM+++G+ +
Sbjct: 204 QMAVVFE-NSKPAVTHFIVLERF-------KEYTLVELKLETGRTHQIRVHMKYIGYPLA 255
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
GD YG K +L + QALHA LG HP+ +L++ +P D+S L+ F
Sbjct: 256 GDPKYGPK--NTLEIDGQALHAKTLGFTHPRTQERLEFEAPMPKDLSDLVDF 305
>gi|307132187|ref|YP_003884203.1| 23S rRNA pseudouridine synthase [Dickeya dadantii 3937]
gi|306529716|gb|ADM99646.1| 23S rRNA pseudouridine synthase [Dickeya dadantii 3937]
Length = 325
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 145/239 (60%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQPISLDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMTAGGTVEEPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ +LI
Sbjct: 252 LYGGRPRLPKGASEAFIETLRNFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVELIA 310
>gi|416055397|ref|ZP_11579476.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|444333569|ref|ZP_21149340.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|348003074|gb|EGY43730.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551537|gb|ELT59360.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 324
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 145/242 (59%), Gaps = 23/242 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI GM++ + R+P R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGMVDEPMARHPTKRT 196
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER + + +R L+TGRTHQIRVHM + H ++
Sbjct: 197 HMAVHP--MGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K S+ L+ F RQALHA L L HP + ++W LP+D +L
Sbjct: 248 GDQTYGGRPRPPKNASEELMSVLRNFKRQALHAVMLRLQHPISGEMMEWYAPLPEDFVEL 307
Query: 249 IT 250
IT
Sbjct: 308 IT 309
>gi|397164305|ref|ZP_10487762.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
radicincitans DSM 16656]
gi|396094151|gb|EJI91704.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
radicincitans DSM 16656]
Length = 326
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 145/239 (60%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 LYGGRPRPPKGASDEFIDVLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVDLIA 310
>gi|294142197|ref|YP_003558175.1| ribosomal large subunit pseudouridine synthase D [Shewanella
violacea DSS12]
gi|293328666|dbj|BAJ03397.1| ribosomal large subunit pseudouridine synthase D [Shewanella
violacea DSS12]
Length = 324
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 145/232 (62%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I L+I+YED+ I+++NK AGLVVHP GN GTL + LL P + VPRAGIVHRLD
Sbjct: 80 QAIDLNIVYEDDHILVINKQAGLVVHPGAGNSDGTLLNALLHHCPGIELVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ HLV+ L+ + R+Y A+V G G ++ I R+P R M
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVSALQAREITREYEAIVLGSLISGGTVDEPIDRHPTKRTHM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V ++ KPA+T++ R+A + H L R L++GRTHQIRVHM LGH +VGD +Y
Sbjct: 200 AVV--YSGKPAMTHF-RVAEKF--RAHTRL-RLRLESGRTHQIRVHMAHLGHTLVGDPVY 253
Query: 205 GKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G + + + F RQALHA +L L HP + W+ +P+D+
Sbjct: 254 GGRPRPPKAVTPEFFDVYMNFKRQALHAIRLELAHPYTCEIMSWQAPVPEDM 305
>gi|395231531|ref|ZP_10409819.1| 23S rRNA pseudouridine synthase D [Citrobacter sp. A1]
gi|421846350|ref|ZP_16279499.1| 23S rRNA pseudouridine synthase D [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424734305|ref|ZP_18162844.1| ribosomal large subunit pseudouridine synthase d [Citrobacter sp.
L17]
gi|394714740|gb|EJF20644.1| 23S rRNA pseudouridine synthase D [Citrobacter sp. A1]
gi|411772503|gb|EKS56118.1| 23S rRNA pseudouridine synthase D [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422891885|gb|EKU31896.1| ribosomal large subunit pseudouridine synthase d [Citrobacter sp.
L17]
gi|455643275|gb|EMF22403.1| 23S rRNA pseudouridine synthase D [Citrobacter freundii GTC 09479]
Length = 326
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVQLI 309
>gi|432863619|ref|ZP_20087501.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE146]
gi|431403789|gb|ELG87055.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE146]
Length = 326
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWYAPIPQDMVELI 309
>gi|399910051|ref|ZP_10778365.1| pseudouridine synthase [Halomonas sp. KM-1]
Length = 319
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 149/243 (61%), Gaps = 21/243 (8%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
EL+ ++ F E + I LDI++ED+E++I++K AGLVVHPA GN GTL + LL
Sbjct: 65 ELVATLEEETRF----EAEDIPLDIVHEDDEVLIIDKPAGLVVHPAAGNPDGTLLNALLH 120
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
P L VPRAGIVHRLDK+++GLMVVAK++ + LV QL+ + R+Y A+ G+
Sbjct: 121 HCPGLAAVPRAGIVHRLDKDTTGLMVVAKTLAAQTALVEQLQARTMSREYDAVCVGVMTS 180
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
G ++A I R+P +R + V + + KPA+T+Y R+ H +RC L+TGRTHQ
Sbjct: 181 GGTVDAPIGRHPKDRKRQAV--HPSGKPAVTHY-RVVERFRTHTH---VRCRLETGRTHQ 234
Query: 187 IRVHMQWLGHGIVGDNLYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKL 235
IRVH+ +VGD +YG + K+L+ F RQALHA KL +HP + +
Sbjct: 235 IRVHLAHRRFPLVGDPVYGGRLKLPAAASEELKTLLREFPRQALHARKLAFLHPASGETV 294
Query: 236 KWR 238
++R
Sbjct: 295 EFR 297
>gi|422296832|ref|ZP_16384492.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
avellanae BPIC 631]
gi|407991926|gb|EKG33658.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
avellanae BPIC 631]
Length = 306
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 146/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDIIYED++I+++NK AGLVVHPA G+ GTL + LL P ++NVPRAGIVHRLDK+
Sbjct: 67 IELDIIYEDDQILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIVNVPRAGIVHRLDKD 126
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G I+A I R+ R +M V
Sbjct: 127 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKIDAPIGRHGQQRQRMAV 186
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 187 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHVNYPLVGDPAYGG 240
Query: 207 KY----SKSL-------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ + SL F RQALHA L L HP ++ W LPDD L++
Sbjct: 241 RFRIPPAASLTMVDSLKTFPRQALHARFLELDHPITGKRMSWESPLPDDFVWLLSL 296
>gi|372269574|ref|ZP_09505622.1| RluA family pseudouridine synthase [Marinobacterium stanieri S30]
Length = 322
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 152/242 (62%), Gaps = 17/242 (7%)
Query: 19 LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78
+ + E + I LDI++ED++I+++NK AGLVVHPA G+ SGTL + LL P + VPRAG
Sbjct: 73 IEEHEGEAIPLDIVHEDDDILVINKPAGLVVHPAAGHDSGTLMNALLHHCPDIDQVPRAG 132
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHRLDK+++GLMVVAK+I + LV+QL+ + R+Y A+V G+ G ++ + R+
Sbjct: 133 IVHRLDKDTTGLMVVAKTIAAQTELVSQLQERSMGREYEAVVNGVMTGGGSVDEPLGRHS 192
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM V K A+T+Y R+ H IR L+TGRTHQIRVHM + + +
Sbjct: 193 KNRQKMAVVG--LGKEAVTHY-RVLEKFRAHTH---IRLKLETGRTHQIRVHMAHINYPL 246
Query: 199 VGDNLYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
VGD +YG ++ S ++ F RQALHA KL L HP + W ++LP+D+ K
Sbjct: 247 VGDQMYGGRFRLPKGCSPTMQKVMRNFRRQALHAKKLELWHPGTGELVSWEVDLPEDMQK 306
Query: 248 LI 249
L+
Sbjct: 307 LL 308
>gi|386389635|ref|ZP_10074449.1| pseudouridine synthase, RluA family [Haemophilus
paraphrohaemolyticus HK411]
gi|385695405|gb|EIG25967.1| pseudouridine synthase, RluA family [Haemophilus
paraphrohaemolyticus HK411]
Length = 325
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 145/241 (60%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLYHYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+V GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRQITREYEAVVSGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F RQALHA L L HP ++W +LP+D +L
Sbjct: 249 GDQLYGGRPRPPKGASEEFLAVLRSFQRQALHAAMLRLEHPITGELMEWHASLPEDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|88707052|ref|ZP_01104748.1| Ribosomal large subunit pseudouridine synthase D [Congregibacter
litoralis KT71]
gi|88698702|gb|EAQ95825.1| Ribosomal large subunit pseudouridine synthase D [Congregibacter
litoralis KT71]
Length = 312
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 16/236 (6%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + L+I+YED E+++++K AGLVVHP GN +GTL + LL P L +PR GIVHRLD
Sbjct: 64 EALPLEIVYEDEELLVIDKPAGLVVHPGAGNHNGTLVNALLNHRPDLEAIPRGGIVHRLD 123
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SGL+VVA ++ ++ LV QL+ VQR+Y A+V G+P G + AAI R+P R KM
Sbjct: 124 KETSGLLVVAATLNAHRSLVAQLQKKDVQREYFAIVRGVPSGGGRVEAAIGRHPRQRTKM 183
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V KPA+T+Y R+A + + L+TGRTHQIRVHM G+ ++GD +Y
Sbjct: 184 AVVAA-GGKPAVTHY-RIARRFAQ---YTALDVQLETGRTHQIRVHMAHRGYPLLGDPVY 238
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G + S+ L F RQALHA +L +HP + + L DD+ L+
Sbjct: 239 GGRLQLPRGASERLAAALRGFRRQALHAQRLSFVHPGSGDHCSFESPLSDDLEALL 294
>gi|227115223|ref|ZP_03828879.1| 23S rRNA pseudouridine synthase D [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 325
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + IKLDI+YED +I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQDIKLDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGSMTAGGMVEQPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ I F+RQALHA L HP + ++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEDFIETLRGFDRQALHATMLRFYHPITGIHMEWHAELPQDMVDLI 309
>gi|37525235|ref|NP_928579.1| 23S rRNA pseudouridine synthase D [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784662|emb|CAE13562.1| ribosomal large subunit pseudouridine synthase D (pseudouridylate
synthase) (uracil hydrolyase) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 325
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NKS LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQNIALNIVYEDDDILVINKSRDLVVHPGAGNPDGTVLNALLYHYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMV+AK++ + LV L++ + R+Y A+ G GM+ I R+P R
Sbjct: 138 LDKDTTGLMVIAKTVPAQTRLVESLQLREITREYEAVATGRMTAGGMVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAITHYRVMEH---FRAHTRL-RLRLETGRTHQIRVHMAHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S F+RQALHA L L HP ++++W LPDD+ LI
Sbjct: 252 LYGGRPRPLKGASDEFREVMRNFDRQALHATMLRLYHPITGIEMEWHAELPDDMVMLI 309
>gi|440286530|ref|YP_007339295.1| ribosomal large subunit pseudouridine synthase D
[Enterobacteriaceae bacterium strain FGI 57]
gi|440046052|gb|AGB77110.1| ribosomal large subunit pseudouridine synthase D
[Enterobacteriaceae bacterium strain FGI 57]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G GM+ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGMVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASDEFISALRKFDRQALHATMLRLYHPITGIEMEWHAPIPQDMVDLI 309
>gi|387771908|ref|ZP_10128065.1| pseudouridine synthase, RluA family [Haemophilus parahaemolyticus
HK385]
gi|386908293|gb|EIJ72991.1| pseudouridine synthase, RluA family [Haemophilus parahaemolyticus
HK385]
Length = 325
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLYHYPSIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRQITREYEAVASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASEEFLAVLRSFQRQALHATMLRLEHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|417690780|ref|ZP_12340000.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
5216-82]
gi|332088103|gb|EGI93228.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
5216-82]
Length = 300
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHMR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|432422937|ref|ZP_19665480.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE178]
gi|430943397|gb|ELC63510.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE178]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMVHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|393724529|ref|ZP_10344456.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
PAMC 26605]
Length = 322
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L++++ED+ +I+++K AGLVVHPA GN GTL + LL ++ V R GIVHR
Sbjct: 90 IALNVVFEDDHLIVIDKQAGLVVHPAAGNADGTLVNALLHHCAGNLSGIGGVARPGIVHR 149
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNR 141
+DK++SGLMV AK+ +++ L Q H + R+Y A+V G P G ++A + R+P NR
Sbjct: 150 IDKDTSGLMVAAKTDRAHEGLARQFHDHSIDRRYKAIVSGRPAPTAGSVDAPLARSPSNR 209
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM + K A+T+Y ER+ G +L+ C L+TGRTHQ+RVHM LGH +
Sbjct: 210 KKMAIVPG--GKRAVTHYTTLERVNGG-------ALVECRLETGRTHQVRVHMASLGHPL 260
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+GD +YG+ ++L F RQALHA +LG IHP N L + +PDD+ +L T
Sbjct: 261 IGDPVYGRTKQGHKALLETLGFRRQALHAARLGFIHPVNCNALAFDSEMPDDMQELFT 318
>gi|158425878|ref|YP_001527170.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158332767|dbj|BAF90252.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 354
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 150/244 (61%), Gaps = 24/244 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
+ L I YED+ +I+++K AGLVVHPA GN SGTL + LL ++ V R GIVHR
Sbjct: 106 MDLSIAYEDDFLIVVDKPAGLVVHPAPGNWSGTLVNGLLAHCGASLSGIGGVKRPGIVHR 165
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLNGMINAAIMRNP 138
LDK++SGL+VVAK+ ++ L Q H ++R Y A VWG+P G ++A I R+P
Sbjct: 166 LDKDTSGLLVVAKTDAAHAGLAAQFADHGRTGPLERAYYAFVWGVPDQRGTVDAPIDRHP 225
Query: 139 HNRIKMTVSKNFNAKPALTYYERLA--TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R KM V ++ + A+T++ERL G SLI C L+TGRTHQIRVH+ +GH
Sbjct: 226 THRQKMAVRQS--GREAITHWERLEVFAGADGAPLASLIECQLETGRTHQIRVHLAHVGH 283
Query: 197 GIVGDNLYGKKY----------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
++GD +YG+ + +++L+ RQALHA +LG HP + +L + LP+D
Sbjct: 284 PLLGDEVYGQGFRTKASRLPEGARALLAALGRQALHAARLGFAHPVTDEELLFESPLPED 343
Query: 245 ISKL 248
+++L
Sbjct: 344 LARL 347
>gi|424815312|ref|ZP_18240463.1| 23S rRNA pseudouridine synthase D [Escherichia fergusonii ECD227]
gi|325496332|gb|EGC94191.1| 23S rRNA pseudouridine synthase D [Escherichia fergusonii ECD227]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLYYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|401677937|ref|ZP_10809908.1| 23S rRNA pseudouridine synthase D [Enterobacter sp. SST3]
gi|400214708|gb|EJO45623.1| 23S rRNA pseudouridine synthase D [Enterobacter sp. SST3]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVDLI 309
>gi|15803118|ref|NP_289149.1| 23S rRNA pseudouridine synthase D [Escherichia coli O157:H7 str.
EDL933]
gi|12517018|gb|AAG57707.1|AE005490_2 suppressor of ftsH mutation [Escherichia coli O157:H7 str. EDL933]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTXLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|119775737|ref|YP_928477.1| pseudouridylate synthase [Shewanella amazonensis SB2B]
gi|119768237|gb|ABM00808.1| ribosomal large subunit pseudouridine synthase D [Shewanella
amazonensis SB2B]
Length = 324
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 143/230 (62%), Gaps = 17/230 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED+ I+++NK AGLVVHP GN GTL + LL P + +VPRAGI+HRLDK+
Sbjct: 82 IDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLHHCPEIEHVPRAGIIHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ HLV L+ + R+Y A+V G G ++A I R+P R M V
Sbjct: 142 TTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMTAGGTVDAPIGRHPTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ + +P++T+Y R+A + H L R L+TGRTHQIRVHM +GH +VGD +YG
Sbjct: 202 --HHSGRPSVTHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAHIGHVLVGDPVYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
K S F RQALHA +L L HP + + +P+D+
Sbjct: 256 RPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSFNAPIPEDM 305
>gi|238785831|ref|ZP_04629800.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
bercovieri ATCC 43970]
gi|238713244|gb|EEQ05287.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
bercovieri ATCC 43970]
Length = 325
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDSDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIVDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFITILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|448240620|ref|YP_007404673.1| 23S rRNA pseudouridine synthase [Serratia marcescens WW4]
gi|445210984|gb|AGE16654.1| 23S rRNA pseudouridine synthase [Serratia marcescens WW4]
gi|453064616|gb|EMF05580.1| 23S rRNA pseudouridine synthase D [Serratia marcescens VGH107]
Length = 325
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIALDIVYEDSDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGTMTAGGTVEEPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM ++ H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAYISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFINTLRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLI 309
>gi|300948988|ref|ZP_07163044.1| pseudouridine synthase, RluA family [Escherichia coli MS 116-1]
gi|300957377|ref|ZP_07169594.1| pseudouridine synthase, RluA family [Escherichia coli MS 175-1]
gi|417619182|ref|ZP_12269595.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
G58-1]
gi|419939897|ref|ZP_14456680.1| 23S rRNA pseudouridine synthase D [Escherichia coli 75]
gi|432738084|ref|ZP_19972839.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE42]
gi|300315880|gb|EFJ65664.1| pseudouridine synthase, RluA family [Escherichia coli MS 175-1]
gi|300451545|gb|EFK15165.1| pseudouridine synthase, RluA family [Escherichia coli MS 116-1]
gi|345374495|gb|EGX06446.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
G58-1]
gi|388406097|gb|EIL66508.1| 23S rRNA pseudouridine synthase D [Escherichia coli 75]
gi|431280928|gb|ELF71836.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE42]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLM VAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMAVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|402815875|ref|ZP_10865467.1| pseudouridine synthase [Paenibacillus alvei DSM 29]
gi|402506915|gb|EJW17438.1| pseudouridine synthase [Paenibacillus alvei DSM 29]
Length = 248
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 149/230 (64%), Gaps = 16/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I LD+ YED ++I++NK G+VVHPA G+ SGT+ + L+ L + R GIVHR+
Sbjct: 22 IPLDVYYEDKDVIVINKPRGMVVHPAPGHTSGTVVNALMHHCRDLSGINGELRPGIVHRI 81
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++ AK ++++HL QLK H V RKY+A+V G +P G ++A I R+ H+R
Sbjct: 82 DKDTSGLLMAAKHDRAHVHLAEQLKEHSVMRKYVALVHGNVPHDQGTVDAPIGRDTHDRK 141
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
TV++N N+K A+T++ ER +L+ L+TGRTHQIRVHM+++GH +V
Sbjct: 142 MYTVTEN-NSKHAVTHFKVLERFGDA-------TLVELQLETGRTHQIRVHMKFIGHPLV 193
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +Y + ++ L N QALHA LG +HP + L++ +P+D+ L+
Sbjct: 194 GDPMYSRG-TRGLTMNGQALHAMTLGFVHPTSGETLEFHAPIPEDMESLL 242
>gi|425289736|ref|ZP_18680572.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3006]
gi|408212635|gb|EKI37152.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
3006]
Length = 326
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIIINKLRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|238798952|ref|ZP_04642415.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
mollaretii ATCC 43969]
gi|238717181|gb|EEQ09034.1| Ribosomal large subunit pseudouridine synthase D [Yersinia
mollaretii ATCC 43969]
Length = 325
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDSDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIVDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 256 RPRPPRGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 309
>gi|398948513|ref|ZP_10672834.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM33]
gi|398160566|gb|EJM48833.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM33]
Length = 320
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IALDILYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHVPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H +R L+TGRTHQIRVHM + + +VGD YG
Sbjct: 201 ME--GGKQAVSHY-RVLERFRSHTH---VRVKLETGRTHQIRVHMAHINYPLVGDPAYGG 254
Query: 207 KYS----------KSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ +SL F RQALHA L L HP ++ W LP+D L+T
Sbjct: 255 RFRIPPAANPTMVESLKNFPRQALHARFLELDHPTTGKRMSWESPLPEDFVWLLTL 310
>gi|354596492|ref|ZP_09014509.1| pseudouridine synthase, RluA family [Brenneria sp. EniD312]
gi|353674427|gb|EHD20460.1| pseudouridine synthase, RluA family [Brenneria sp. EniD312]
Length = 325
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIALDIVYEDQDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G GM++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMTAGGMVDEPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASDEFITVLRGFDRQALHATMLRLYHPVSGIQMEWHAPLPQDMVDLI 309
>gi|385787424|ref|YP_005818533.1| 23S rRNA pseudouridine synthase D [Erwinia sp. Ejp617]
gi|310766696|gb|ADP11646.1| 23S rRNA pseudouridine synthase D [Erwinia sp. Ejp617]
Length = 325
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL +P + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHHFPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDSLQRREITREYEAVAIGRMTAGGTVDQPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIATLRAFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVDLI 309
>gi|336246712|ref|YP_004590422.1| 23S rRNA pseudouridine synthase D [Enterobacter aerogenes KCTC
2190]
gi|444355309|ref|YP_007391453.1| Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
[Enterobacter aerogenes EA1509E]
gi|334732768|gb|AEG95143.1| 23S rRNA pseudouridine synthase D [Enterobacter aerogenes KCTC
2190]
gi|443906139|emb|CCG33913.1| Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
[Enterobacter aerogenes EA1509E]
Length = 326
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 151/265 (56%), Gaps = 30/265 (11%)
Query: 9 IIIKPKKNFFLNKT-------------EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGN 55
+I KPK+ F + E + I L+I+YED++I+++NK LVVHP GN
Sbjct: 51 VIDKPKEKVFGGEAVSIDVEIEEDVRFEPQDIPLNIVYEDDDILVINKPRDLVVHPGAGN 110
Query: 56 LSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115
GT+ + LL YP + +VPRAGIVHRLDK+++GLMVVAK+I + LV L++ + R+
Sbjct: 111 PDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTIPAQTRLVESLQLREITRE 170
Query: 116 YLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
Y A+ G G + I R+P R M V KPA+T+Y + I+ + +
Sbjct: 171 YEAVAIGHMTAGGTVEEPISRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRIHTR----L 224
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKL 224
R L+TGRTHQIRVHM + H +VGD +YG K S I F+RQALHA L
Sbjct: 225 RLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPKGASDEFISALRKFDRQALHATML 284
Query: 225 GLIHPKNNLKLKWRINLPDDISKLI 249
L HP ++++W +P D+ +LI
Sbjct: 285 RLYHPITGIEMEWHAPIPQDMVELI 309
>gi|322514978|ref|ZP_08067990.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
ureae ATCC 25976]
gi|322119031|gb|EFX91195.1| ribosomal large subunit pseudouridine synthase D [Actinobacillus
ureae ATCC 25976]
Length = 325
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDILVINKPKDLVVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ G+ G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAVTSGVMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMTHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASEEFLAVLRGFQRQALHATMLRLEHPITGELMEWHAPLPDDFIEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|400406028|ref|YP_006588776.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Heteropsylla cubana]
gi|400364281|gb|AFP85348.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Heteropsylla cubana]
Length = 315
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 155/262 (59%), Gaps = 24/262 (9%)
Query: 3 ISGYELIIIKPKKNFFLNKT---EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGT 59
I G E + IK +F+ +T E + I L I+YEDN+I+++NK LVVHP GN SGT
Sbjct: 59 IRGNEHVEIK----YFIKETTPYEAQAIPLRIVYEDNDILVINKQNNLVVHPGAGNTSGT 114
Query: 60 LFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
L + LL +P ++NVPRAGIVHRLDKN++GLM++AKS LV LK + R+Y A+
Sbjct: 115 LLNGLLYYFPPILNVPRAGIVHRLDKNTTGLMLIAKSKLVQERLVKSLKAREITREYEAV 174
Query: 120 VWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
G G+I I R+ R +M V N K A+T+Y + T N H+ L L
Sbjct: 175 AIGSMTAGGVIEQPIARHATKRTQMAV--NPTGKSAVTHYHIIET-FRNHTHLKL---QL 228
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSL-----IFNRQALHAYKLGLIH 228
+TGRTHQIRVHM ++ H +VGD+LYG KK S S+ F RQALHA L H
Sbjct: 229 QTGRTHQIRVHMAYIHHPLVGDSLYGRLRTSFKKTSSSVNNVLRNFRRQALHASMLRFYH 288
Query: 229 PKNNLKLKWRINLPDDISKLIT 250
P LK++ LP+D+ LI+
Sbjct: 289 PTTFLKIECHAPLPEDMISLIS 310
>gi|317049249|ref|YP_004116897.1| RluA family pseudouridine synthase [Pantoea sp. At-9b]
gi|316950866|gb|ADU70341.1| pseudouridine synthase, RluA family [Pantoea sp. At-9b]
Length = 326
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EAQNIPLNIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLYHYPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L++ + R+Y A+ G G +N + R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVETLQLREITREYEAVAIGTMTAGGTVNEPMARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S + I F+RQALHA L L HP ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASDAFIETLRGFDRQALHATMLRLYHPITGIEMEWHAPLPQDMVDLI 309
>gi|377579333|ref|ZP_09808303.1| 23S rRNA pseudouridine synthase RluD [Escherichia hermannii NBRC
105704]
gi|377539443|dbj|GAB53468.1| 23S rRNA pseudouridine synthase RluD [Escherichia hermannii NBRC
105704]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIQALRQFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVDLI 309
>gi|354595229|ref|ZP_09013265.1| RluA family pseudouridine synthase [Commensalibacter intestini
A911]
gi|353671521|gb|EHD13224.1| RluA family pseudouridine synthase [Commensalibacter intestini
A911]
Length = 329
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 147/247 (59%), Gaps = 25/247 (10%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAG 78
E + I LDI+YED +I++NKSAGLVVHPA GN GTL + LL + P + R G
Sbjct: 83 EAQEIALDILYEDEVLIVINKSAGLVVHPAPGNEDGTLVNALLAHCGDQLPGIGGEKRPG 142
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN---GMINAAIM 135
IVHRLDK++SG++VVAK+ ++ L + R YLA+ WGI LN G I I
Sbjct: 143 IVHRLDKDTSGIIVVAKTEQALTKLSEDFASRNIDRLYLALCWGI--LNPAKGTIEGDIG 200
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
R+P++R KM V K N K A T+Y+ L IIN ISLI+C L TGRTHQIRVH+ G
Sbjct: 201 RDPYDRKKMAVVKR-NGKFARTHYKTLE--IINPA-ISLIQCKLDTGRTHQIRVHLSKEG 256
Query: 196 HGIVGDNLYGKKY------------SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H +VGD +Y K+ + +L F RQALHA LG HP L++ NLP
Sbjct: 257 HPLVGDPVYFKRIPAIAKQLPPEQKNAALDFPRQALHATFLGFTHPSTGKYLQFETNLPK 316
Query: 244 DISKLIT 250
D+ LIT
Sbjct: 317 DMQSLIT 323
>gi|417290694|ref|ZP_12077975.1| pseudouridine synthase, RluA family [Escherichia coli B41]
gi|386253016|gb|EIJ02706.1| pseudouridine synthase, RluA family [Escherichia coli B41]
Length = 300
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLM VAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMAVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|312171425|emb|CBX79684.1| ribosomal large subunit pseudouridine synthase D [Erwinia amylovora
ATCC BAA-2158]
Length = 325
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L I+YED++I+++NK LVVHP GN GT+ + LL +P + +VPRAGIVHR
Sbjct: 78 EAQDIPLAIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHHFPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ S HLV+ L+ + R+Y A+ G G +N I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPSQTHLVDALQRREITREYEAVAIGRMTAGGTVNEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ +LI
Sbjct: 252 LYGGRPRPPKGASEAFIATLRAFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVELI 309
>gi|311278476|ref|YP_003940707.1| RluA family pseudouridine synthase [Enterobacter cloacae SCF1]
gi|308747671|gb|ADO47423.1| pseudouridine synthase, RluA family [Enterobacter cloacae SCF1]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEQPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 LYGGRPRPPKGASDEFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVDLI 309
>gi|117624818|ref|YP_853731.1| 23S rRNA pseudouridine synthase D [Escherichia coli APEC O1]
gi|218559515|ref|YP_002392428.1| 23S rRNA pseudouridine synthase D [Escherichia coli S88]
gi|237706817|ref|ZP_04537298.1| 23S rRNA pseudouridine synthase D [Escherichia sp. 3_2_53FAA]
gi|419944840|ref|ZP_14461310.1| 23S rRNA pseudouridine synthase D [Escherichia coli HM605]
gi|422361377|ref|ZP_16442003.1| pseudouridine synthase, RluA family [Escherichia coli MS 110-3]
gi|422750405|ref|ZP_16804316.1| RluA family protein pseudouridine synthase [Escherichia coli H252]
gi|422754663|ref|ZP_16808489.1| RluA family protein pseudouridine synthase [Escherichia coli H263]
gi|422840559|ref|ZP_16888529.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
H397]
gi|432358932|ref|ZP_19602151.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE4]
gi|432363692|ref|ZP_19606855.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE5]
gi|432588873|ref|ZP_19825228.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE58]
gi|432598717|ref|ZP_19834990.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE62]
gi|432755425|ref|ZP_19989972.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE22]
gi|432779504|ref|ZP_20013727.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE59]
gi|432788497|ref|ZP_20022626.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE65]
gi|432821943|ref|ZP_20055633.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE118]
gi|432823431|ref|ZP_20057114.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE123]
gi|433006055|ref|ZP_20194482.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE227]
gi|433008650|ref|ZP_20197065.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE229]
gi|433154673|ref|ZP_20339610.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE176]
gi|433164485|ref|ZP_20349219.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE179]
gi|115513942|gb|ABJ02017.1| 23S rRNA pseudouridine synthase [Escherichia coli APEC O1]
gi|218366284|emb|CAR04036.1| 23S rRNA pseudouridine synthase [Escherichia coli S88]
gi|226899857|gb|EEH86116.1| 23S rRNA pseudouridine synthase D [Escherichia sp. 3_2_53FAA]
gi|315284807|gb|EFU44252.1| pseudouridine synthase, RluA family [Escherichia coli MS 110-3]
gi|323951205|gb|EGB47081.1| RluA family protein pseudouridine synthase [Escherichia coli H252]
gi|323957037|gb|EGB52763.1| RluA family protein pseudouridine synthase [Escherichia coli H263]
gi|371605988|gb|EHN94590.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
H397]
gi|388417425|gb|EIL77268.1| 23S rRNA pseudouridine synthase D [Escherichia coli HM605]
gi|430875664|gb|ELB99186.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE4]
gi|430885123|gb|ELC08050.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE5]
gi|431119266|gb|ELE22274.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE58]
gi|431129649|gb|ELE31762.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE62]
gi|431301518|gb|ELF90724.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE22]
gi|431325768|gb|ELG13146.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE59]
gi|431336294|gb|ELG23413.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE65]
gi|431367012|gb|ELG53498.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE118]
gi|431379089|gb|ELG64025.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE123]
gi|431513113|gb|ELH91198.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE227]
gi|431522835|gb|ELH99980.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE229]
gi|431672933|gb|ELJ39165.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE176]
gi|431685705|gb|ELJ51272.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE179]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQ+LHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQSLHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|223042001|ref|ZP_03612184.1| 23S rRNA pseudouridine synthase D [Actinobacillus minor 202]
gi|223017199|gb|EEF15628.1| 23S rRNA pseudouridine synthase D [Actinobacillus minor 202]
Length = 325
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 153/261 (58%), Gaps = 24/261 (9%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G ELI I+ + + + E + I L+I+YED++II++NK LVVHP GN GT+ +
Sbjct: 59 VFGGELIEIQAEVEEEV-RFEPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLN 117
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP + VPRAGIVHRLDK+++GLMVVAK+I + HLV L+ + R+Y A+ G
Sbjct: 118 ALLYHYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAIASG 177
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNL 179
I G ++ + R+P R M V KPA+T+Y ER ++ + +R L
Sbjct: 178 IMTQGGKVDEPMARHPTKRTAMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRL 228
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIH 228
+TGRTHQIRVHM + H ++GD LYG K S+ + F RQALHA L L H
Sbjct: 229 ETGRTHQIRVHMAHIAHPLLGDQLYGGXPRPPKGASEEFLTVLRGFQRQALHATMLRLEH 288
Query: 229 PKNNLKLKWRINLPDDISKLI 249
P ++W LPDD +L+
Sbjct: 289 PITGELMEWHAPLPDDFVELV 309
>gi|429093584|ref|ZP_19156166.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
dublinensis 1210]
gi|429097515|ref|ZP_19159621.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
dublinensis 582]
gi|426283855|emb|CCJ85734.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
dublinensis 582]
gi|426741480|emb|CCJ82279.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
dublinensis 1210]
Length = 300
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLDIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 226 LYGGRPRPPKGASEAFIQALRQFDRQALHATMLRLYHPISGVMMEWHAPIPQDMIDLI 283
>gi|422836953|ref|ZP_16884985.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E101]
gi|371606806|gb|EHN95397.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
E101]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHALIPQDMVELI 309
>gi|423121672|ref|ZP_17109356.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5246]
gi|376393764|gb|EHT06419.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5246]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|417704450|ref|ZP_12353545.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-218]
gi|417739486|ref|ZP_12388062.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
4343-70]
gi|332753864|gb|EGJ84241.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
4343-70]
gi|332997822|gb|EGK17432.1| ribosomal large subunit pseudouridine synthase D [Shigella flexneri
K-218]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPR+GIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRSGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|91211928|ref|YP_541914.1| 23S rRNA pseudouridine synthase D [Escherichia coli UTI89]
gi|386600565|ref|YP_006102071.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
IHE3034]
gi|386603370|ref|YP_006109670.1| 23S rRNA pseudouridine synthase D [Escherichia coli UM146]
gi|432575475|ref|ZP_19811948.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE55]
gi|433169559|ref|ZP_20354183.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE180]
gi|91073502|gb|ABE08383.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
UTI89]
gi|294490521|gb|ADE89277.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
IHE3034]
gi|307625854|gb|ADN70158.1| 23S rRNA pseudouridine synthase D [Escherichia coli UM146]
gi|431105101|gb|ELE09447.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE55]
gi|431686556|gb|ELJ52117.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE180]
Length = 326
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQ+LHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQSLHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|378581054|ref|ZP_09829704.1| 23S rRNA pseudouridine synthase [Pantoea stewartii subsp. stewartii
DC283]
gi|377816133|gb|EHT99238.1| 23S rRNA pseudouridine synthase [Pantoea stewartii subsp. stewartii
DC283]
Length = 326
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 147/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHHYPAIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDALQRREITREYEAVAIGTMTAGGTVDEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ I F+RQALHA L L HP + +++++ +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEEFIATLRGFDRQALHATMLRLYHPISGIEMEFHAAIPQDMIDLI 309
>gi|290476241|ref|YP_003469141.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Xenorhabdus bovienii SS-2004]
gi|289175574|emb|CBJ82377.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Xenorhabdus bovienii SS-2004]
Length = 325
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I+L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIELNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYRYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMV+AK++ + LV L++ + R+Y A+ G GM+ I R+P R
Sbjct: 138 LDKDTTGLMVIAKTVPAQTRLVESLQLREITREYEAIALGCMTAGGMVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + K A+T+Y + + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKSAVTHYRVMEH---FRAHTRL-RLRLETGRTHQIRVHMAHIKHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S F+RQALHA L L HP + ++++W LPDD+ KLI
Sbjct: 252 LYGGRPRPLKGASDEFREVMRNFDRQALHATMLRLYHPISGIEMEWHAELPDDMVKLI 309
>gi|152971444|ref|YP_001336553.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896040|ref|YP_002920776.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|262043838|ref|ZP_06016928.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|330012968|ref|ZP_08307538.1| ribosomal large subunit pseudouridine synthase D [Klebsiella sp. MS
92-3]
gi|365139800|ref|ZP_09346064.1| ribosomal large subunit pseudouridine synthase D [Klebsiella sp.
4_1_44FAA]
gi|386036067|ref|YP_005955980.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae KCTC 2242]
gi|419764287|ref|ZP_14290527.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae DSM 30104]
gi|419972352|ref|ZP_14487780.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980703|ref|ZP_14495985.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419983725|ref|ZP_14498875.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991777|ref|ZP_14506740.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997786|ref|ZP_14512580.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420000918|ref|ZP_14515575.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010857|ref|ZP_14525324.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013480|ref|ZP_14527790.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022398|ref|ZP_14536567.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420028216|ref|ZP_14542198.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420030069|ref|ZP_14543897.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035796|ref|ZP_14549459.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045304|ref|ZP_14558773.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047910|ref|ZP_14561225.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420052982|ref|ZP_14566161.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061852|ref|ZP_14574834.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068247|ref|ZP_14581029.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071032|ref|ZP_14583681.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420075820|ref|ZP_14588295.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081378|ref|ZP_14593687.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424831909|ref|ZP_18256637.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|424932239|ref|ZP_18350611.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|425075404|ref|ZP_18478507.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082747|ref|ZP_18485844.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086040|ref|ZP_18489133.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092831|ref|ZP_18495915.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428936037|ref|ZP_19009474.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae JHCK1]
gi|428942576|ref|ZP_19015560.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae VA360]
gi|449059105|ref|ZP_21736866.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae hvKP1]
gi|150956293|gb|ABR78323.1| 23S rRNA pseudouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238548358|dbj|BAH64709.1| 23S rRNA pseudouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259038808|gb|EEW39989.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|328533634|gb|EGF60346.1| ribosomal large subunit pseudouridine synthase D [Klebsiella sp. MS
92-3]
gi|339763195|gb|AEJ99415.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae KCTC 2242]
gi|363654023|gb|EHL92954.1| ribosomal large subunit pseudouridine synthase D [Klebsiella sp.
4_1_44FAA]
gi|397344923|gb|EJJ38051.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350761|gb|EJJ43847.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397355357|gb|EJJ48367.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397362184|gb|EJJ54838.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363041|gb|EJJ55685.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372443|gb|EJJ64927.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377607|gb|EJJ69834.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397379563|gb|EJJ71754.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397384638|gb|EJJ76751.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392064|gb|EJJ83878.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402528|gb|EJJ94131.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407813|gb|EJJ99198.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397409880|gb|EJK01177.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397415854|gb|EJK07033.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397424399|gb|EJK15297.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397426655|gb|EJK17463.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397429601|gb|EJK20311.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397441118|gb|EJK31506.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397448319|gb|EJK38498.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397453387|gb|EJK43448.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|397742870|gb|EJK90088.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae DSM 30104]
gi|405594593|gb|EKB68003.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600999|gb|EKB74164.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405605972|gb|EKB78972.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611173|gb|EKB83941.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806426|gb|EKF77677.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|414709347|emb|CCN31051.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|426298381|gb|EKV60790.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae VA360]
gi|426299166|gb|EKV61520.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae JHCK1]
gi|448875201|gb|EMB10226.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae hvKP1]
Length = 326
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 QPQDIPLNIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMSHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|163750158|ref|ZP_02157401.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Shewanella benthica KT99]
gi|161330215|gb|EDQ01197.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Shewanella benthica KT99]
Length = 324
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 144/232 (62%), Gaps = 17/232 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I L+I+YED+ I+++NK AGLVVHP GN GTL + LL P + VPRAGIVHRLD
Sbjct: 80 QAIDLNIVYEDDHILVINKQAGLVVHPGAGNSDGTLLNALLHHCPGIELVPRAGIVHRLD 139
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K+++GLMVVAK++++ HLV+ L+ + R+Y A+V G G ++ I R+P R M
Sbjct: 140 KDTTGLMVVAKTVEAQTHLVSALQAREITREYEAIVMGSLISGGTVDEPIDRHPTKRTHM 199
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+T++ R+A + H L R L++GRTHQIRVHM LGH +VGD +Y
Sbjct: 200 AVV--LSGKPAMTHF-RVAEKF--RAHTRL-RLRLESGRTHQIRVHMAHLGHTLVGDPVY 253
Query: 205 GKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
G + + + F RQALHA +L L HP + W+ +P+D+
Sbjct: 254 GGRPRPPKAVTPEFFEIFMGFKRQALHAIRLELAHPYTCEIMSWQAPVPEDM 305
>gi|322831462|ref|YP_004211489.1| pseudouridine synthase [Rahnella sp. Y9602]
gi|384256576|ref|YP_005400510.1| 23S rRNA pseudouridine synthase D [Rahnella aquatilis HX2]
gi|321166663|gb|ADW72362.1| pseudouridine synthase, RluA family [Rahnella sp. Y9602]
gi|380752552|gb|AFE56943.1| 23S rRNA pseudouridine synthase D [Rahnella aquatilis HX2]
Length = 325
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 140/234 (59%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +I+++NK LVVHP GN GT+ + LL YP +I+VPR GIVHRLDK+
Sbjct: 82 IALDIVYEDTDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAIIDVPRCGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAKS+ + HLV L+ + R+Y A+ G G +N I R+ R M V
Sbjct: 142 TTGLMVVAKSVPAQTHLVTALQAREITREYEAVAIGTMTAGGTVNEPIARHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L++GRTHQIRVHM + H ++GD LYG
Sbjct: 202 --HPTGKPATTHY-RIMEHF--RAHTRL-RLRLESGRTHQIRVHMAHINHPLLGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S+ I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 256 RPRLPKGASEPFINMLRGFDRQALHATMLRLYHPVTGIQMEWHAPIPQDMVDLI 309
>gi|420348868|ref|ZP_14850250.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
965-58]
gi|391267909|gb|EIQ26840.1| ribosomal large subunit pseudouridine synthase D [Shigella boydii
965-58]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KP++T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPSVTHYRIMEHFRVHMR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|422819251|ref|ZP_16867462.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
M919]
gi|385537252|gb|EIF84134.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
M919]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEYIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|334125228|ref|ZP_08499219.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
hormaechei ATCC 49162]
gi|333387303|gb|EGK58503.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
hormaechei ATCC 49162]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVELI 309
>gi|378980146|ref|YP_005228287.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|402779462|ref|YP_006635008.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|421912825|ref|ZP_16342533.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421916253|ref|ZP_16345835.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|428151945|ref|ZP_18999648.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|364519557|gb|AEW62685.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|402540402|gb|AFQ64551.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|410113260|emb|CCM85158.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410121486|emb|CCM88460.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|427538087|emb|CCM95786.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 300
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 QPQDIPLNIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 112 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMSHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 226 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 283
>gi|294666973|ref|ZP_06732202.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
gi|292603262|gb|EFF46684.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
Length = 331
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 144/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN TL + LL P L +VPR+G+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRSGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMT 316
>gi|259909396|ref|YP_002649752.1| 23S rRNA pseudouridine synthase D [Erwinia pyrifoliae Ep1/96]
gi|387872375|ref|YP_005803756.1| ribosomal large subunit pseudouridine synthase D [Erwinia
pyrifoliae DSM 12163]
gi|224965018|emb|CAX56548.1| Ribosomal large subunit pseudouridine synthase D [Erwinia
pyrifoliae Ep1/96]
gi|283479469|emb|CAY75385.1| ribosomal large subunit pseudouridine synthase D [Erwinia
pyrifoliae DSM 12163]
Length = 325
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +I+++NK LVVHP GN GT+ + LL +P + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDEDILVVNKPRDLVVHPGAGNPDGTVLNALLHHFPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDALQRREITREYEAVAIGRMTAGGTVDQPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIATLRAFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVDLI 309
>gi|365157073|ref|ZP_09353354.1| RluA family pseudouridine synthase [Bacillus smithii 7_3_47FAA]
gi|363625807|gb|EHL76818.1| RluA family pseudouridine synthase [Bacillus smithii 7_3_47FAA]
Length = 303
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/232 (47%), Positives = 149/232 (64%), Gaps = 18/232 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
+ LDI YED ++I++NK G+VVHPA G+LSGTL + L+ L IN V R GIVHR+
Sbjct: 78 MDLDIYYEDRDVIVVNKPRGMVVHPAPGHLSGTLVNGLMAHCKDLSGINGVLRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++ AK+ ++ L QL V RKY A+V G IP G I+A I R+P +R
Sbjct: 138 DKDTSGLLMAAKNDYAHEKLSQQLSNKTVTRKYKAIVHGVIPHDVGTIDAPIGRDPKDRQ 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V +N K A+T++ ER + SLI C L+TGRTHQIRVHM+++GH +
Sbjct: 198 KMAVVEN--GKHAVTHFRVLERFS-------QYSLIECELETGRTHQIRVHMKYIGHPLA 248
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
GD YG K K+L QALHA LG IHP+ L+++ LPDD S+++TF
Sbjct: 249 GDPKYGPK--KTLNIEGQALHAEVLGFIHPRTEEYLEFKAPLPDDFSRILTF 298
>gi|8575702|gb|AAF78056.1|AF263561_1 23S rRNA pseudouridine synthase [secondary endosymbiont of
Glycaspis brimblecombei]
Length = 314
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 145/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED+EII++NK LVVHP GN GT+ + LL YP +INVPRAGIVHRLDK+
Sbjct: 71 IPLNIVYEDDEIIVINKPRDLVVHPGAGNPDGTVLNALLYRYPEIINVPRAGIVHRLDKD 130
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMV+AK+I + HLV L++ + R+Y A+V G G ++ I R+P R M +
Sbjct: 131 TTGLMVIAKTIPAQTHLVEALQLREITREYEAVVNGRMTAGGTVDEPIARHPTKRTHMAI 190
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
KPA+T+Y + + H L R L++GRTHQIRVHM + H +VGD +YG
Sbjct: 191 HP--LGKPAITHYRVMEHF---RAHTRL-RLRLESGRTHQIRVHMAHINHPLVGDPVYGG 244
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S+ F+RQALHA L L HP+ ++++W ++P D+ LI
Sbjct: 245 RPRPLKGVSEEFRQVMNNFDRQALHATMLRLYHPRTGIEMEWHADIPADMVILI 298
>gi|339000203|ref|ZP_08638820.1| pseudouridine synthase [Halomonas sp. TD01]
gi|338762899|gb|EGP17914.1| pseudouridine synthase [Halomonas sp. TD01]
Length = 319
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 140/226 (61%), Gaps = 17/226 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED+ ++++NK+AG+VVHPA GN GTL + LL +P L VPRAGIVHR
Sbjct: 77 EPQDIPLDIVYEDDAVMVINKAAGMVVHPAAGNPDGTLLNALLHHHPALAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLM+VAK++ + LV QL+ V R+Y A+V G P I+A I R+P +R
Sbjct: 137 LDKDTTGLMMVAKTLPAQTTLVEQLQARSVSRQYDAVVIGKPVSGSTIDAPIGRHPKDRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+ V + KPA+T++ R+ H +RC L+TGRTHQIRVHM + ++GD
Sbjct: 197 RQAV--KASGKPAVTHF-RVVERFRAHTH---VRCQLETGRTHQIRVHMAHARYPLIGDP 250
Query: 203 LYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKW 237
LY + K ++ F RQALHA KL +HP + L +
Sbjct: 251 LYSGRAKLPPGAAAPLKEILREFPRQALHARKLSFVHPVSGETLTF 296
>gi|296113272|ref|YP_003627210.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis RH4]
gi|416240122|ref|ZP_11632237.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC1]
gi|295920966|gb|ADG61317.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BBH18]
gi|326566421|gb|EGE16571.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC1]
Length = 355
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 148/239 (61%), Gaps = 25/239 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +DIIYED +II+NK AG+VVHP GN +GTL + LL +P ++PRAG+VHR+DK+
Sbjct: 118 IDIDIIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKD 177
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK---LNGMINAAIMRNPHNRIK 143
++GL+V+A++ + + L+NQLK V R Y + G + I+A I R+ +R K
Sbjct: 178 TTGLLVIARTKSAQLSLINQLKDKSVYRHYQCIALGAVHEVLRHAQIDAPIGRHSTHRTK 237
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHI----SLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V + KPALT+ I+N K++ SL+ +LKTGRTHQIRVH+ ++GH +V
Sbjct: 238 MAVKQ--TGKPALTH-------IVNAKYLHERYSLLDIHLKTGRTHQIRVHLSYVGHPLV 288
Query: 200 GDNLYG---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG ++ L F RQALHAY LG IHP +K+ LP D+ +LI
Sbjct: 289 GDPVYGTSPRSGLSDRQRCAILDFGRQALHAYMLGFIHPVTGEAMKFHAPLPKDMQQLI 347
>gi|121604767|ref|YP_982096.1| RluA family pseudouridine synthase [Polaromonas naphthalenivorans
CJ2]
gi|120593736|gb|ABM37175.1| ribosomal large subunit pseudouridine synthase D [Polaromonas
naphthalenivorans CJ2]
Length = 344
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 152/259 (58%), Gaps = 15/259 (5%)
Query: 4 SGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+G EL I ++P K E+ + LDI+YED +I++NK AGLVVHPA GN SGTL +
Sbjct: 91 AGDELTIELRPTPQSQAFKPEE--MALDIVYEDRHLIVVNKPAGLVVHPAPGNWSGTLLN 148
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P +PRAGIVHRLDK++SGLMVVA+ ++ LV+ + V R+Y+A+ G
Sbjct: 149 GLLAHDPQASFMPRAGIVHRLDKDTSGLMVVARQRQTMDQLVSMIAARTVSREYIALAHG 208
Query: 123 I--PKLNGMINAAIMRNPHNRIKMTV---SKNFNAKPALTYYERLATGIINKKHISLIRC 177
+ A I R+P NR++M V KN + K A T L +KH L++C
Sbjct: 209 TWEGAKTRQVEAPIGRDPRNRLRMAVVDLEKN-SGKAASTVISLLDNA---EKHC-LVKC 263
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKW 237
L TGRTHQIRVHM +LGH +V D +YG + SL RQALHA +L HP +++
Sbjct: 264 KLHTGRTHQIRVHMAFLGHPLVSDEVYGGAVAGSL--QRQALHACRLAFAHPVTGAAMEF 321
Query: 238 RINLPDDISKLITFSGIKW 256
+ P D+ I G+++
Sbjct: 322 KSLPPPDLEMAIAGFGLRY 340
>gi|359453756|ref|ZP_09243061.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20495]
gi|414072184|ref|ZP_11408135.1| 23S rRNA pseudouridine synthase [Pseudoalteromonas sp. Bsw20308]
gi|358049190|dbj|GAA79310.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20495]
gi|410805401|gb|EKS11416.1| 23S rRNA pseudouridine synthase [Pseudoalteromonas sp. Bsw20308]
Length = 325
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 145/251 (57%), Gaps = 24/251 (9%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E I P++ N I L+I+YED+ I+++NK GLVVHP GN GT+ + LL
Sbjct: 68 ETTIEAPREYLAQN------IDLNIVYEDDHILVINKPMGLVVHPGAGNPDGTVLNALLH 121
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPK 125
YP +INVPRAGIVHRLDK+++GLMVVAK+I + HLV L K R+Y A+ G
Sbjct: 122 HYPEIINVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVTALQKRENFTREYEALCNGTMT 181
Query: 126 LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
GMI I R+ R M V + KPA+T+Y R+A + H L R L+TGRTH
Sbjct: 182 AGGMIEKPIGRHATQRTHMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTH 235
Query: 186 QIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLK 234
QIRVHM +L H ++GD YG K + L F RQALHA KL + HP
Sbjct: 236 QIRVHMAYLNHPLIGDQSYGGRPRPPKGATPELFELLRSFRRQALHAVKLSIAHPITGEM 295
Query: 235 LKWRINLPDDI 245
+ W+ +PDD+
Sbjct: 296 MTWQAPIPDDM 306
>gi|424790529|ref|ZP_18217067.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422797994|gb|EKU26165.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 335
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 140/232 (60%), Gaps = 23/232 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+++I+LNK AGLVVHP GN +GTL + LL P L +PRAGIVHRLDK+
Sbjct: 92 IPLEVLYEDDQVIVLNKPAGLVVHPGAGNPTGTLVNALLYRDPSLAALPRAGIVHRLDKD 151
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG MVVA+++ ++ LV QL V R+YLA+V G G A I R+P +R++M V
Sbjct: 152 TSGAMVVARTLPAHTSLVAQLSARDVHRQYLAVVAGPLVSGGTATAPIDRHPRDRLRMAV 211
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + + A+T+Y ER + H +L C L+TGRTHQIRVHM L H I+GD L
Sbjct: 212 RE--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKHPIIGDPL 262
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
YG K + LI F RQALHA L HP ++ +P D
Sbjct: 263 YGGALKLPKGATDELIAELRGFKRQALHAETLEFKHPLTGEPVRATAAVPAD 314
>gi|238760705|ref|ZP_04621826.1| Ribosomal large subunit pseudouridine synthase D [Yersinia aldovae
ATCC 35236]
gi|238701078|gb|EEP93674.1| Ribosomal large subunit pseudouridine synthase D [Yersinia aldovae
ATCC 35236]
Length = 325
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDSDILVINKPRGLVVHPGAGNPDGTVLNALLYYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S S I F+RQALHA L L HP + ++++W LP D+ +LI
Sbjct: 256 RPRPPKGASDSFISILRGFDRQALHATMLRLYHPISGIQMEWHAALPKDMVELI 309
>gi|392545973|ref|ZP_10293110.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas rubra ATCC
29570]
Length = 325
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 146/238 (61%), Gaps = 18/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK GLVVHP GN +GT+ + LL +P +INVPRAGIVHR
Sbjct: 78 EAQDIALDIVYEDDDILVINKPMGLVVHPGAGNPNGTVLNALLHHHPEIINVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I + HLV L+ R+Y A+ G GMI I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIVAQTHLVKNLQARENFTREYEAICNGTMTAGGMIEKPIGRHATKR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M + + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 THMAIHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLKHPLIGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
LYG + S + F RQALHA KL + HP + + W +P+D+ +L
Sbjct: 252 QLYGGRPCPPRNASPEFLDTLRGFKRQALHAVKLRIAHPVSGEIMTWEAPIPEDMQQL 309
>gi|365971691|ref|YP_004953252.1| ribosomal large subunit pseudouridine synthase D [Enterobacter
cloacae EcWSU1]
gi|365750604|gb|AEW74831.1| Ribosomal large subunit pseudouridine synthase D [Enterobacter
cloacae EcWSU1]
Length = 326
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVDLI 309
>gi|148257971|ref|YP_001242556.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
gi|146410144|gb|ABQ38650.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
Length = 326
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 27/270 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ SG + I P+ K E I L ++YED++I++L+K AGLVVHPA G+ +GTL
Sbjct: 53 VASGDTITIDVPEAAPPEPKAE--AIPLHVVYEDDDIVVLDKPAGLVVHPAAGHETGTLV 110
Query: 62 DNLLEIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ L+ ++ V R GIVHRLDK+++GLMVVAK+ ++ L Q H ++
Sbjct: 111 NALIAHCGASLSGIGGVKRPGIVHRLDKDTTGLMVVAKNDHAHASLSAQFADHGRTGAME 170
Query: 114 RKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKK 170
R YLA WG+P + +G INA + R+PH R KM V + A+T+YE + G K
Sbjct: 171 RGYLAFSWGLPHRPHGTINAPLDRHPHARDKMAVRPR--GREAITHYEVQESFVGRDGKP 228
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL------------IFNRQA 218
SLI C+L+TGRTHQIRVH+ LGH ++GD +YG + RQA
Sbjct: 229 VASLIACHLETGRTHQIRVHLAHLGHTLLGDAVYGPHFKTKANQLAPGARAALEALGRQA 288
Query: 219 LHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
LHAY L + HP+ L+W LP+D+S L
Sbjct: 289 LHAYLLVIEHPRTGEILRWESELPEDLSLL 318
>gi|383936978|ref|ZP_09990394.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Rheinheimera
nanhaiensis E407-8]
gi|383701959|dbj|GAB60485.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Rheinheimera
nanhaiensis E407-8]
Length = 324
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 151/260 (58%), Gaps = 23/260 (8%)
Query: 2 IISGYELIIIK--PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGT 59
++ G ++ I+ P+ F E + I LDI+YED I+++NK AGLVVHP GN GT
Sbjct: 59 VLGGEQIDILAELPEDERF----EAQPIDLDIVYEDEHILVINKPAGLVVHPGAGNSDGT 114
Query: 60 LFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
L + LL P + VPRAGI+HRLDK+++GLMVVAK+I + HLV ++ + R+Y A+
Sbjct: 115 LLNALLHHCPGIAEVPRAGIIHRLDKDTTGLMVVAKTIPAQTHLVEAMQAREITREYEAV 174
Query: 120 VWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
G G I+ I R+P R M VS+ + KPA T++ + + H L R L
Sbjct: 175 CHGAMTGGGTIDEPIGRHPTKRTHMAVSQ--SGKPATTHFRVMEK---YRAHTRL-RLRL 228
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIH 228
+TGRTHQIRVHM ++ H +VGD +Y +K + L+ F RQALHA L L H
Sbjct: 229 ETGRTHQIRVHMTYVNHPLVGDPVYAGRPRPPRKAGEHLLTVLRNFKRQALHAAMLRLAH 288
Query: 229 PKNNLKLKWRINLPDDISKL 248
P L+W +P D+ +L
Sbjct: 289 PITLEILEWHAPIPQDMVEL 308
>gi|219871128|ref|YP_002475503.1| 23S rRNA pseudouridine synthase D [Haemophilus parasuis SH0165]
gi|219691332|gb|ACL32555.1| 23S rRNA pseudouridine synthase D [Haemophilus parasuis SH0165]
Length = 325
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 142/241 (58%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDILVINKPKDLVVHPGAGNPDGTVLNALLHHYPQIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVTALQRREITREYEAVASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ S +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYSRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASGEFLEVLRNFKRQALHATMLRLHHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|253681471|ref|ZP_04862268.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
gi|253561183|gb|EES90635.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
Length = 304
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 145/220 (65%), Gaps = 11/220 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRAGIVHRL 83
I LDI+YED +II++NK G+VVHPA N SGTL + LL + L + R GIVHR+
Sbjct: 78 IDLDILYEDKDIIVINKPQGMVVHPATSNYSGTLVNGLLYHCDTLSTLNDDTRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRI 142
DK++SG++VVAK+ K++ L QLK H ++R+Y+A+V GI K NG I+ + RNP +RI
Sbjct: 138 DKDTSGVLVVAKNNKAHEVLAEQLKEHSMKREYIALVEGILKKDNGFIDKPLGRNPKDRI 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V + K A+T+YE L N +L++C L+TGRTHQIRVHM ++GH +VGD
Sbjct: 198 KMAVVQ--EGKNAITHYEVLKRFKKN----TLVKCILETGRTHQIRVHMSYIGHPLVGDP 251
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
+YG K + Q LHA KLG IHP ++++ +LP
Sbjct: 252 MYGFK-KQRFKLKGQMLHAKKLGFIHPTTQEYIEFQSDLP 290
>gi|419960227|ref|ZP_14476271.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
cloacae GS1]
gi|388604899|gb|EIM34125.1| 23S rRNA pseudouridine synthase D [Enterobacter cloacae subsp.
cloacae GS1]
Length = 326
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVELI 309
>gi|251788633|ref|YP_003003354.1| pseudouridine synthase, RluA family [Dickeya zeae Ech1591]
gi|247537254|gb|ACT05875.1| pseudouridine synthase, RluA family [Dickeya zeae Ech1591]
Length = 325
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 144/239 (60%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQPISLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMTAGGTVDEPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H ++GD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLIGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S + I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRLPKGASDTFIETLRNFDRQALHATMLRLYHPISGIEMEWHAALPQDMVDLIA 310
>gi|408822093|ref|ZP_11206983.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
geniculata N1]
Length = 329
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 145/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I LD+++ED ++++NK GLVVHP GN SGTL + LL P + +PRAGI
Sbjct: 77 TDAQPEDIPLDVLFEDEHLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SG+MVVAK++++ LV QL V R+YLA+V G G +A I R+P
Sbjct: 137 VHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPR 196
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R+KM V + + K A+T+Y ER + H +L C L+TGRTHQIRVHM + H
Sbjct: 197 DRLKMAVRE--DGKEAITHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHVRH 247
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
I+GD LYG K S L+ F RQALHA L HP ++ +PDD+
Sbjct: 248 PIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFTHPITGEPVRNTAPVPDDM 307
Query: 246 SKLI 249
L+
Sbjct: 308 LHLM 311
>gi|359781832|ref|ZP_09285055.1| pseudouridine synthase [Pseudomonas psychrotolerans L19]
gi|359370202|gb|EHK70770.1| pseudouridine synthase [Pseudomonas psychrotolerans L19]
Length = 319
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 145/230 (63%), Gaps = 17/230 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED+ +++L+K AGLVVHPA G+ GTL + LL L +VPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDHLLVLDKPAGLVVHPAAGHADGTLLNALLHHVTSLDSVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ HLV QL+ V R Y A+V G+ G ++A I R+ R +M V
Sbjct: 141 TTGLMVVAKTLEAHTHLVAQLQARSVSRIYEAIVAGVIVAGGTVSAPIGRHSQRRQQMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA+++Y L + + R L+TGRTHQIRVHM +G +VGD +YG
Sbjct: 201 IA--GGKPAVSHYRVLE----RFRAYTHTRVKLETGRTHQIRVHMTHVGFPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++ + +L+ F RQALHA L L HP +L+W LP+D+
Sbjct: 255 RFKIPPATNPTLVKTLREFPRQALHARFLELDHPVTGERLRWESPLPEDL 304
>gi|315634974|ref|ZP_07890255.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
segnis ATCC 33393]
gi|315476236|gb|EFU66987.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
segnis ATCC 33393]
Length = 324
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 143/245 (58%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED +I+++NK LVVHP GN GT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPEAIPLNIVYEDEDILVINKPKDLVVHPGAGNPKGTVLNALLYHYPQIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LPDD
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMEVLRNFKRQALHAVMLRLQHPISGEMMEWYAPLPDDF 304
Query: 246 SKLIT 250
+L+T
Sbjct: 305 VELVT 309
>gi|329297086|ref|ZP_08254422.1| RluA family pseudouridine synthase [Plautia stali symbiont]
Length = 326
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED+ I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQNIPLDIVYEDDHILVINKPRDLVVHPGAGNPDGTVLNVLLYHYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L++ + R+Y A+ G G +N + R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVETLQLREITREYEAVAIGTMTAGGTVNEPMARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHIKHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFISTLRGFDRQALHATMLRLYHPITGIEMEWHAPLPQDMVDLI 309
>gi|397676419|ref|YP_006517957.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397108|gb|AFN56435.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 317
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 147/237 (62%), Gaps = 14/237 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAG 78
E + I L+I++ED ++++NK AG+VVHPA GN TL + LL ++ V R G
Sbjct: 76 EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHR+DK++SGL+VVAK+ ++ L Q H + R+Y A+V G P L G ++A + R+
Sbjct: 136 IVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGHVDAPLARSS 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM + + K A+T+Y R+ T + K+ SLI C L+TGRTHQ+RVHM +GH +
Sbjct: 196 VNRQKMAIVSDGRGKRAVTHY-RMITPL---KNASLIECRLETGRTHQVRVHMSSIGHSL 251
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+GD +YG+ +SL F RQALHA LG IHP + ++ + +P+D+ L
Sbjct: 252 LGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPEDMQLLF 308
>gi|418464696|ref|ZP_13035635.1| 23S rRNA pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756651|gb|EHK90808.1| 23S rRNA pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 324
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 146/245 (59%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V + KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAV--HPMGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMSVLRHFKRQALHAVMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|359299521|ref|ZP_09185360.1| 23S rRNA pseudouridine synthase D [Haemophilus [parainfluenzae]
CCUG 13788]
gi|402304305|ref|ZP_10823375.1| pseudouridine synthase, RluA family [Haemophilus sputorum HK 2154]
gi|400377893|gb|EJP30758.1| pseudouridine synthase, RluA family [Haemophilus sputorum HK 2154]
Length = 325
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 141/237 (59%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED +II++NK LVVHP GN GT+ + LL YP + VPRAGIVHRLDK+
Sbjct: 82 IPLNIVYEDEDIIVINKPKNLVVHPGAGNPDGTVLNALLYHYPPIAEVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I + HLV L+ + R+Y A+ GI G ++ + R+P R M V
Sbjct: 142 TTGLMVVAKNIPAQTHLVTALQKRQITREYEAVASGIMTQGGKVDEPMARHPTKRTAMAV 201
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++GD L
Sbjct: 202 HP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQL 252
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ L+ F RQALHA L L HP ++W LP+D +LI
Sbjct: 253 YGGRPRPPKGASEELLSVLRGFQRQALHAAMLRLAHPITGEMMEWHAPLPEDFVELI 309
>gi|319408111|emb|CBI81764.1| ribosomal large subunit pseudouridine synthase D [Bartonella
schoenbuchensis R1]
Length = 340
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 161/275 (58%), Gaps = 30/275 (10%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL--- 65
+II P KN L E + I LDI++ED+ +I++NK AGLVVHP GN +GTL + L+
Sbjct: 63 LIIPPLKNVHL---EGEAIVLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHC 119
Query: 66 -EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMV 120
+ + V R GIVHRLDKN+SG+MVVAK+ ++ L Q H + R+Y A++
Sbjct: 120 GDSLSGIGGVKRPGIVHRLDKNTSGVMVVAKNDFAHKSLSAQFSDHGRTCALDRRYHALI 179
Query: 121 WGIPKLN-GMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISL 174
W P+ N G I+ + R+PHNRIK TV +N +A+ A+T++ E+ T + SL
Sbjct: 180 WNAPRRNIGTIDVPLGRSPHNRIKQTVVRHQNVHARHAITHFSLLEKYKTCADAEPFASL 239
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS----------KSLI--FNRQALHAY 222
+ C L+TGRTHQIRVHM +GH +VGD +YG + K+ I FNRQALHA
Sbjct: 240 LECRLETGRTHQIRVHMAHIGHPLVGDTVYGNAFKTKANTLNSTIKNAIDQFNRQALHAV 299
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLIT-FSGIKW 256
L HP + + P D+++LI F + W
Sbjct: 300 SLTFEHPAKGEIMSFSSPPPQDMAELINHFKKLDW 334
>gi|271501679|ref|YP_003334705.1| pseudouridine synthase, RluA family [Dickeya dadantii Ech586]
gi|270345234|gb|ACZ77999.1| pseudouridine synthase, RluA family [Dickeya dadantii Ech586]
Length = 325
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 143/239 (59%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQPISLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMTAGGTVDEPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRLPKGASDEFIETLRNFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLIA 310
>gi|357974156|ref|ZP_09138127.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
KC8]
Length = 318
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ SG + P N E + I L I YED +I+++K AGLVVHPA GNL GTL
Sbjct: 61 VASGSAFDVSVPPPAPLEN--EAQDIPLVIAYEDEHLIVIDKPAGLVVHPAAGNLDGTLV 118
Query: 62 DNLLEIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117
+ LL ++ V R GIVHR+DK++SGLMV AK+ ++ L Q H + R+Y
Sbjct: 119 NALLHHCQGSLSGIGGVARPGIVHRIDKDTSGLMVAAKTDLAHEGLARQFAAHSIDRRYR 178
Query: 118 AMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIR 176
A+V G+P G I+A + R+ NR K+ + + K A+T+Y +A K S++
Sbjct: 179 AIVAGLPNPTTGTIDAPLARSTTNRKKIAIVSDGRGKRAVTHYRLIAA----LKGASVVE 234
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK------SLIFNRQALHAYKLGLIHPK 230
C L+TGRTHQ+RVHM LGH ++GD +YG+ + L F RQALHA LG IHP
Sbjct: 235 CRLETGRTHQVRVHMASLGHPLLGDPVYGRTRPEHRGILSRLDFQRQALHAAHLGFIHPY 294
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ L + N+P D+ L++
Sbjct: 295 SGAHLAFDSNMPHDMQLLLS 314
>gi|417086022|ref|ZP_11953303.1| 23S rRNA pseudouridine synthase D [Escherichia coli cloneA_i1]
gi|355350859|gb|EHG00055.1| 23S rRNA pseudouridine synthase D [Escherichia coli cloneA_i1]
Length = 326
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAGAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQ+LHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQSLHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|429120811|ref|ZP_19181472.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
sakazakii 680]
gi|426324729|emb|CCK12209.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
sakazakii 680]
Length = 300
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 226 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPISGILMEWHAPIPQDMVDLI 283
>gi|338707486|ref|YP_004661687.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294290|gb|AEI37397.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 314
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 144/236 (61%), Gaps = 14/236 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAG 78
E + I L+I++ED+ ++I+NK AG+VVHPA GN TL + LL ++ V R G
Sbjct: 76 EAQDIPLNIVFEDDHLLIVNKPAGMVVHPAAGNFDNTLVNALLHHCAGKLSGIGGVARPG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHR+DK++SGL+VVAK+ ++ L Q H + R+Y A+V G P L G ++A++ R+
Sbjct: 136 IVHRIDKDTSGLLVVAKTDPAHAGLAAQFAKHSIDRRYQAIVVGRPSLQGHVDASLARSS 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM + K A+T+Y R+ T + K +LI C L+TGRTHQ+RVHM +GH +
Sbjct: 196 VNRQKMAIVAEGRGKHAVTHY-RMVTPL---KEAALIECRLETGRTHQVRVHMASIGHSL 251
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
+GD +YG+ K L F RQALHA LG IHP ++ + +P D+ L
Sbjct: 252 LGDPVYGRSKKAHHALLKELAFQRQALHAAHLGFIHPILGKQVDFNAEMPQDMQLL 307
>gi|429105775|ref|ZP_19167644.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
malonaticus 681]
gi|429111338|ref|ZP_19173108.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
malonaticus 507]
gi|426292498|emb|CCJ93757.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
malonaticus 681]
gi|426312495|emb|CCJ99221.1| Ribosomal large subunit pseudouridine synthase D [Cronobacter
malonaticus 507]
Length = 300
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 EPQDIPLNIVYEDDDIMVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G ++ I R+P R
Sbjct: 112 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTAGGTVSEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + + ++W +P D+ LI
Sbjct: 226 LYGGRPRPPKGASEAFIQALRKFDRQALHATMLRLYHPISGILMEWHAPIPQDMVDLI 283
>gi|383817290|ref|ZP_09972666.1| 23S rRNA pseudouridine synthase D [Serratia sp. M24T3]
gi|383293845|gb|EIC82203.1| 23S rRNA pseudouridine synthase D [Serratia sp. M24T3]
Length = 325
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 143/235 (60%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED++I+++NK LVVHP GN GT+ + LL YP +I+VPR GIVHRLDK+
Sbjct: 82 IALEIVYEDSDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPEIIDVPRCGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + HLV+ L+ + R+Y A+ G G +N I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTHLVDALQRREITREYEAVAIGNMTAGGTVNQPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHIDHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S + I F+RQALHA L L HP ++++W LP D+ LI+
Sbjct: 256 RPRPPKGASDNFIQQLRTFDRQALHATMLRLFHPVTGIQMEWHAPLPKDMVDLIS 310
>gi|416050868|ref|ZP_11577152.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993681|gb|EGY35022.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 324
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 146/245 (59%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V + KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAV--HPMGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMSVLRHFKRQALHAVMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|89093551|ref|ZP_01166499.1| pseudouridine synthase [Neptuniibacter caesariensis]
gi|89082241|gb|EAR61465.1| pseudouridine synthase [Oceanospirillum sp. MED92]
Length = 322
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED I+++NK AGLVVHPA+G+ GTL + LL P + VPRAGIVHRLD +
Sbjct: 81 IPLDIVYEDEHILVINKPAGLVVHPAVGHRDGTLLNALLYHCPDIAQVPRAGIVHRLDMD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I + LV QL+ + R+Y A+V G+ G+++ + R+ NR KM V
Sbjct: 141 TTGLMVVAKTIAAQTELVEQLQERSMGREYEAVVNGVMTGGGVVDEPMGRHSKNRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+T+Y R+ + + H IR L+TGRTHQIRVHM + + +VGD +YG
Sbjct: 201 VG--VGKEAVTHY-RVLKKLRSHTH---IRLKLETGRTHQIRVHMSHINYPLVGDQMYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S ++ F RQALHA KL L HP + + W ++LP+DI L+
Sbjct: 255 RFRLPKGCSDEMMDALRDFKRQALHAKKLELWHPHSGELVSWEVDLPEDIQNLLAV 310
>gi|240949469|ref|ZP_04753809.1| 23S rRNA pseudouridine synthase D [Actinobacillus minor NM305]
gi|240296042|gb|EER46703.1| 23S rRNA pseudouridine synthase D [Actinobacillus minor NM305]
Length = 325
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLYHYPPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRHITREYEAIASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASEEFLSVLRGFQRQALHATMLRLEHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
+
Sbjct: 309 V 309
>gi|56414629|ref|YP_151704.1| 23S rRNA pseudouridine synthase D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|56128886|gb|AAV78392.1| ftsH suppressor protein SfhB [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
Length = 326
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVH GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHLGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>gi|221135103|ref|ZP_03561406.1| RluA family pseudouridine synthase [Glaciecola sp. HTCC2999]
Length = 330
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 141/234 (60%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI++ED ++++NK AGLVVHP GN GT+ + LL +P + N+PRAGIVHRLDK+
Sbjct: 88 IELDIVFEDEHVLVINKPAGLVVHPGAGNADGTVLNALLAHHPEIENIPRAGIVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + +LV QL+ ++ R+Y A+V G G ++ I R+P R M V
Sbjct: 148 TTGLMVVAKTLIAQTYLVEQLQTRVMSREYEALVMGTMVAGGFVDEPIGRHPTKRTSMAV 207
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
K A T+Y R+ H +R L++GRTHQIRVHM + H +VGD LYG
Sbjct: 208 RA--TGKEATTHY-RIKEKFRAHTH---LRLKLESGRTHQIRVHMAHIRHPLVGDQLYGG 261
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S++ + F RQALHA +L HP L + LPDD +L+
Sbjct: 262 RPRMPKAASEAFMQALRNFKRQALHAAQLSFAHPITEDWLTFNAPLPDDFVQLL 315
>gi|344344776|ref|ZP_08775636.1| pseudouridine synthase, RluA family [Marichromatium purpuratum 984]
gi|343803710|gb|EGV21616.1| pseudouridine synthase, RluA family [Marichromatium purpuratum 984]
Length = 327
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI++ED+ ++++NK AGLVVHPA GN GTL + LL P L +PRAGIVHRLDK+
Sbjct: 86 IALDIVHEDDALLVVNKPAGLVVHPAAGNPDGTLQNALLHHDPGLAALPRAGIVHRLDKD 145
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVAK++ ++ LV QL++ V R+Y A+V G + A + R+P R +M V
Sbjct: 146 TSGLLVVAKTLAAHRSLVEQLRLREVHREYRALVIGECVAGARVEAPVGRHPTQRTRMAV 205
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+PA+++Y ER +L+ L+TGRTHQIRVHM L + +VGD L
Sbjct: 206 VA--GGRPAVSHYRVLERFPGH-------TLLAVELETGRTHQIRVHMSHLRYPLVGDRL 256
Query: 204 YG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG + S++L F RQALHA +LGL HP++ +L W + + D+ L+
Sbjct: 257 YGGRPRPPRGCSEALRGALQRFPRQALHAIRLGLRHPEDGRELHWEVAMAADLEALLA 314
>gi|241764488|ref|ZP_04762509.1| pseudouridine synthase, RluA family [Acidovorax delafieldii 2AN]
gi|241366072|gb|EER60669.1| pseudouridine synthase, RluA family [Acidovorax delafieldii 2AN]
Length = 353
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 139/238 (58%), Gaps = 14/238 (5%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + +D++YED ++++NK AGLVVHPA GN GTL + LL VPRAGIVHRLD
Sbjct: 121 EALPIDVVYEDAHLLVVNKPAGLVVHPAPGNWGGTLLNGLLARDAKAQLVPRAGIVHRLD 180
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---W-GIPKLNGMINAAIMRNPHN 140
K++SGLMVVA+ + LV + V R+YLA+ W G+P N + A I R+P N
Sbjct: 181 KDTSGLMVVARDRTTMDALVRMIAARTVHRQYLAIAHRPWTGVP--NRAVQAPIGRDPRN 238
Query: 141 RIKMTVS--KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
R++M V KPA T LA + + C L TGRTHQIRVHM LGH +
Sbjct: 239 RLRMAVVNLDTHAGKPARTDIRWLAGNDLG----CWVECTLHTGRTHQIRVHMASLGHPL 294
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
V D LYG + L RQALHAY+L HP + L++R LPDD+ + + G+ +
Sbjct: 295 VADALYGGAPAAGL--QRQALHAYRLSFTHPVSGQALEFRAPLPDDMRRALAEWGLGY 350
>gi|397659425|ref|YP_006500127.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca E718]
gi|402840633|ref|ZP_10889095.1| pseudouridine synthase, RluA family [Klebsiella sp. OBRC7]
gi|394347606|gb|AFN33727.1| Ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca E718]
gi|402285349|gb|EJU33835.1| pseudouridine synthase, RluA family [Klebsiella sp. OBRC7]
Length = 300
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 52 QPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAIADVPRAGIVHR 111
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 112 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 171
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 172 HMAVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 225
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 226 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVDLI 283
>gi|393773244|ref|ZP_10361642.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. Rr 2-17]
gi|392721124|gb|EIZ78591.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. Rr 2-17]
Length = 314
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 146/239 (61%), Gaps = 15/239 (6%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE----IYPFLINVPRA 77
E + I L +++ED +I+++K AGLVVHPA GNL GTL + LL + V R
Sbjct: 75 AEAQDIPLSVVFEDEFLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCHGQLSGIGGVARP 134
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMR 136
GIVHR+DK++SGL+VVAK+ +++ L Q H ++R YLA+ G P ++G + AI R
Sbjct: 135 GIVHRIDKDTSGLLVVAKTDRAHEGLAAQFADHSIERAYLAITAGRPLPISGTVTGAIAR 194
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ ++R KM + ++ K A+T+Y L + SL+ C L+TGRTHQ+RVH+ +GH
Sbjct: 195 SVYDRKKMALVEDGRGKHAVTHYRLLE----QLRSSSLVECRLETGRTHQVRVHLASIGH 250
Query: 197 GIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG+ S + F RQALHA +LG +HP + ++ LPDD+ LI
Sbjct: 251 SLLGDPVYGRTPSALRPILQRHSFRRQALHAAELGFVHPVTHETAQFASPLPDDMRTLI 309
>gi|160872393|ref|ZP_02062525.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Rickettsiella grylli]
gi|159121192|gb|EDP46530.1| ribosomal large subunit pseudouridine synthase D (rRNA-uridine
isomerase D) (rRNA pseudouridylate synthase D)
[Rickettsiella grylli]
Length = 325
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 152/239 (63%), Gaps = 18/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + + LDII+ED+ ++++NK AGLVVHP GN TL + LL P L +PRAGI+ R
Sbjct: 80 EAENLPLDIIFEDDALVVINKPAGLVVHPGAGNRHKTLVNALLHHLPALKKLPRAGIIQR 139
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGL+++ K + ++ LV QL+ ++R+Y A++ G+ G INA I R+P R
Sbjct: 140 LDKDTSGLLIIPKILNAHTQLVKQLQARTMKREYTAIIQGLLIAGGSINAPIGRHPKLRK 199
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V++N + KPA+++Y +I + H +LI L+TGRTHQIRVHM + H +VGD
Sbjct: 200 KMAVTEN-HGKPAVSHYR-----VIERFNHHTLINVQLETGRTHQIRVHMAHIHHPLVGD 253
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
Y KK S LI F+RQALHA+ LG+ HP + ++W LP+D+ +LI
Sbjct: 254 KTYSGRFHLPKKASPLLIHCLHHFSRQALHAHCLGITHPISLKPMEWHSPLPEDMKQLI 312
>gi|423125259|ref|ZP_17112938.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5250]
gi|376399226|gb|EHT11844.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5250]
Length = 326
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 QPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVDLI 309
>gi|120610104|ref|YP_969782.1| ribosomal large subunit pseudouridine synthase D [Acidovorax
citrulli AAC00-1]
gi|120588568|gb|ABM32008.1| ribosomal large subunit pseudouridine synthase D [Acidovorax
citrulli AAC00-1]
Length = 339
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 144/249 (57%), Gaps = 16/249 (6%)
Query: 13 PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI 72
P+ F + + LD +YED + I+NK AGLVVHPA GN SGTL + LL + P
Sbjct: 99 PQSQAF----RPEAMALDTVYEDEHLRIVNKPAGLVVHPAPGNWSGTLLNGLLALDPRAG 154
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM---VWGIPKLNGM 129
NVPRAGIVHRLDK++SGLMVVA+ LV + V R+YLA+ W + +
Sbjct: 155 NVPRAGIVHRLDKDTSGLMVVARERSVMDALVRMIAAREVSRQYLALGHRAWQGAQTR-V 213
Query: 130 INAAIMRNPHNRIKM-TVSKNFNA-KPALTYYERLATGIINKKHISLIRCNLKTGRTHQI 187
+ AI R+P NR++M V +A KPA T L T ++ L+ C L TGRTHQI
Sbjct: 214 VEEAIGRDPRNRLRMAAVDLAVHAGKPARTDIAVLDT----CENGCLVHCTLHTGRTHQI 269
Query: 188 RVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
RVHM WL H +V D LYG + + L +RQALHAY+L HP L + LP D++
Sbjct: 270 RVHMAWLRHPLVADALYGGEPAAGL--SRQALHAYRLAFAHPVTGQPLLFHAPLPGDMAG 327
Query: 248 LITFSGIKW 256
+ G+++
Sbjct: 328 ALQAWGLRY 336
>gi|365847000|ref|ZP_09387497.1| ribosomal large subunit pseudouridine synthase D [Yokenella
regensburgei ATCC 43003]
gi|364573151|gb|EHM50664.1| ribosomal large subunit pseudouridine synthase D [Yokenella
regensburgei ATCC 43003]
Length = 326
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F+RQALHA L L HP ++++W +P D+ LI
Sbjct: 252 LYGGRPRPPKHASDEFITELRKFDRQALHATMLRLYHPITGIEMEWHAPIPQDMVDLI 309
>gi|416255213|ref|ZP_11639089.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis O35E]
gi|326576921|gb|EGE26827.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis O35E]
Length = 355
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 25/239 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +DIIYED +II+NK AG+VVHP GN +GTL + LL +P ++PRAG+VHR+DK+
Sbjct: 118 IDIDIIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKD 177
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK---LNGMINAAIMRNPHNRIK 143
++GL+V+A++ + + L++QLK V R Y + G + I+A I R+ +R K
Sbjct: 178 TTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCVALGAVHEVLRHAQIDAPIGRHSTHRTK 237
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHI----SLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V + KPALT+ I+N K++ SL+ +LKTGRTHQIRVH+ ++GH +V
Sbjct: 238 MAVKQ--TGKPALTH-------IVNAKYLHERYSLLDIHLKTGRTHQIRVHLSYVGHPLV 288
Query: 200 GDNLYG---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG ++ L F RQALHAY LG IHP +K+ LP D+ +LI
Sbjct: 289 GDPVYGTSPRSGLSDRQRCAILDFGRQALHAYMLGFIHPVTGEAMKFHAPLPKDMQQLI 347
>gi|375256819|ref|YP_005015989.1| 23S rRNA pseudouridine synthase D [Klebsiella oxytoca KCTC 1686]
gi|423104336|ref|ZP_17092038.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5242]
gi|365906297|gb|AEX01750.1| 23S rRNA pseudouridine synthase D [Klebsiella oxytoca KCTC 1686]
gi|376382908|gb|EHS95637.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5242]
Length = 326
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 QPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVDLI 309
>gi|82778018|ref|YP_404367.1| 23S rRNA pseudouridine synthase D [Shigella dysenteriae Sd197]
gi|309789452|ref|ZP_07684038.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 1617]
gi|81242166|gb|ABB62876.1| suppressor of ftsH mutation [Shigella dysenteriae Sd197]
gi|308922695|gb|EFP68216.1| ribosomal large subunit pseudouridine synthase D [Shigella
dysenteriae 1617]
Length = 326
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN T+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDSTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQRRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|288934030|ref|YP_003438089.1| pseudouridine synthase [Klebsiella variicola At-22]
gi|288888759|gb|ADC57077.1| pseudouridine synthase, RluA family [Klebsiella variicola At-22]
Length = 326
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 QPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMSHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPITGIEMEWHAPIPQDMVELI 309
>gi|88811115|ref|ZP_01126371.1| ribosomal large subunit pseudouridine synthase D [Nitrococcus
mobilis Nb-231]
gi|88791654|gb|EAR22765.1| ribosomal large subunit pseudouridine synthase D [Nitrococcus
mobilis Nb-231]
Length = 315
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 143/237 (60%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L I+YED+ +++++K L+VHP G+ GTL + LL P L +PRAGIVHRLDK
Sbjct: 81 IALRIVYEDDSLLVIDKPPSLIVHPGAGHAGGTLQNALLHYDPRLAGLPRAGIVHRLDKG 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVA+++ ++ LV QL+ V+R YLA+V + G AAI R+ +R +M V
Sbjct: 141 TSGLMVVARNLTAHKLLVEQLQARSVKRDYLALVSAVVTSGGRATAAIGRHRRDRTRMAV 200
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
++ A A+T++ ER A +L+RC+L+TGRTHQIRVHM WL +VGD +
Sbjct: 201 RQDGRA--AVTHFRVVERFAAH-------TLLRCSLETGRTHQIRVHMAWLRQPVVGDPV 251
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ L F RQALHA +L L+HP + W LP D + L+
Sbjct: 252 YGGRTRLPKGASEELKTALSGFRRQALHALELRLVHPATEQAVGWHSPLPADYAYLL 308
>gi|416217936|ref|ZP_11624604.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 7169]
gi|416242382|ref|ZP_11633418.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC7]
gi|416246991|ref|ZP_11635360.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC8]
gi|421780079|ref|ZP_16216569.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis RH4]
gi|326560261|gb|EGE10649.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 7169]
gi|326570229|gb|EGE20274.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC8]
gi|326570966|gb|EGE20990.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis BC7]
gi|407812873|gb|EKF83657.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis RH4]
Length = 355
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 25/239 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +DIIYED +II+NK AG+VVHP GN +GTL + LL +P ++PRAG+VHR+DK+
Sbjct: 118 IDIDIIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKD 177
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK---LNGMINAAIMRNPHNRIK 143
++GL+V+A++ + + L++QLK V R Y + G + I+A I R+ +R K
Sbjct: 178 TTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIALGAVHEVLRHAQIDAPIGRHSTHRTK 237
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHI----SLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V + KPALT+ I+N K++ SL+ +LKTGRTHQIRVH+ ++GH +V
Sbjct: 238 MAVKQ--TGKPALTH-------IVNAKYLHERYSLLDIHLKTGRTHQIRVHLSYVGHPLV 288
Query: 200 GDNLYG---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG ++ L F RQALHAY LG IHP +K+ LP D+ +LI
Sbjct: 289 GDPVYGTSPRSGLSDRQRCAILDFGRQALHAYMLGFIHPVTGEAMKFHAPLPKDMQQLI 347
>gi|56551646|ref|YP_162485.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260752766|ref|YP_003225659.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411467|ref|YP_005620832.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|59803028|sp|P50513.2|RLUD_ZYMMO RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|56543220|gb|AAV89374.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552129|gb|ACV75075.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335931841|gb|AEH62381.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 317
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 146/237 (61%), Gaps = 14/237 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAG 78
E + I L+I++ED ++++NK AG+VVHPA GN TL + LL ++ V R G
Sbjct: 76 EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHR+DK++SGL+VVAK+ ++ L Q H + R+Y A+V G P L G ++A + R+
Sbjct: 136 IVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGHVDAPLARSS 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM + + K A+T+Y R+ T + K+ SLI C L+TGRTHQ+RVHM +GH +
Sbjct: 196 VNRQKMAIVSDGRGKRAVTHY-RMITPL---KNASLIECRLETGRTHQVRVHMSSIGHSL 251
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+GD +YG+ +SL F RQALHA LG IHP + ++ + +P D+ L
Sbjct: 252 LGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDMQLLF 308
>gi|359397988|ref|ZP_09191012.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
pentaromativorans US6-1]
gi|357600406|gb|EHJ62101.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
pentaromativorans US6-1]
Length = 318
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 21/237 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE----IYPFLINVPRAGIVHR 82
I L++++ED +I+++K AGLVVHPA GNL GTL + LL + V R GIVHR
Sbjct: 84 IPLNVVFEDEYLIVVDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVARPGIVHR 143
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
+DK++SGL+VVAK+ +++ L Q H ++R Y A+V G P + G + AI R+ NR
Sbjct: 144 IDKDTSGLLVVAKTDRAHEGLAAQFADHSIERAYKAIVGGHPLPIAGTVTGAIGRSGSNR 203
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM + + K A+T+Y ERL ++ SL+ C L+TGRTHQ+RVHM +GH +
Sbjct: 204 KKMAIVEEGRGKHAVTHYRTIERL-------RNASLVECRLETGRTHQVRVHMSSIGHAL 256
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+GD +YG+ S + L F+RQALHA +LG IHP K+ + +P D++ LI
Sbjct: 257 LGDPVYGRTPSALRPILQRLQFSRQALHAAELGFIHPVKKEKVHFVSPVPADMAALI 313
>gi|416249666|ref|ZP_11636763.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis CO72]
gi|326575838|gb|EGE25761.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis CO72]
Length = 355
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 25/239 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +DIIYED +II+NK AG+VVHP GN +GTL + LL +P ++PRAG+VHR+DK+
Sbjct: 118 IDIDIIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKD 177
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK---LNGMINAAIMRNPHNRIK 143
++GL+V+A++ + + L++QLK V R Y + G + I+A I R+ +R K
Sbjct: 178 TTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIALGAVHEVLRHAQIDAPIGRHSTHRTK 237
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHI----SLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V + KPALT+ I+N K++ SL+ +LKTGRTHQIRVH+ ++GH +V
Sbjct: 238 MAVKQ--TGKPALTH-------IVNAKYLHERYSLLDIHLKTGRTHQIRVHLSYVGHPLV 288
Query: 200 GDNLYG---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG ++ L F RQALHAY LG IHP +K+ LP D+ +LI
Sbjct: 289 GDPVYGTSPRAGLSDRQRCAILDFGRQALHAYMLGFIHPVTGEAMKFHAPLPKDMQQLI 347
>gi|256822306|ref|YP_003146269.1| RluA family pseudouridine synthase [Kangiella koreensis DSM 16069]
gi|256795845|gb|ACV26501.1| pseudouridine synthase, RluA family [Kangiella koreensis DSM 16069]
Length = 324
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I LDI+YED+ ++++NK AGLVVHP GN GT+ + LL P L N+PRAGI+HR+D
Sbjct: 81 EAIDLDIVYEDDALLVINKPAGLVVHPGAGNQDGTMVNALLHHCPDLANLPRAGIIHRID 140
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K ++GL+VVAK+I ++ LV QL+ R+Y A+V + G I+ I R+P R M
Sbjct: 141 KETTGLLVVAKTIAAHTSLVEQLQNRAFTREYDAVVNRVMVSGGTIDKPIGRHPTKRTSM 200
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + K A+T+Y R+ ++ H+ L L+TGRTHQIRVHM +L ++GD LY
Sbjct: 201 AVVA--DGKRAITHY-RVVEKFLDHTHLKL---RLETGRTHQIRVHMAYLKFPLIGDPLY 254
Query: 205 GKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+Y ++ + F RQALHA LGL HP+ + ++WR +P D+++L+
Sbjct: 255 SGRYRVPTRITPELRNTVDNFKRQALHASLLGLQHPETDEYIEWRAPMPQDMARLL 310
>gi|167855786|ref|ZP_02478539.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
parasuis 29755]
gi|167853065|gb|EDS24326.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
parasuis 29755]
Length = 325
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 142/241 (58%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EPQNIPLNIVYEDDDILVINKPKDLVVHPGAGNPDGTVLNALLHHYPQIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVTALQKREITREYEAVASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S + F RQALHA L L HP ++W LPDD +L
Sbjct: 249 GDQLYGGRPRPPKGASGEFLEVLRNFKRQALHATMLRLHHPITGELMEWHAPLPDDFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|423109771|ref|ZP_17097466.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5243]
gi|423115644|ref|ZP_17103335.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5245]
gi|376380575|gb|EHS93319.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5245]
gi|376381140|gb|EHS93879.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
oxytoca 10-5243]
Length = 326
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 QAQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFIAALRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVDLI 309
>gi|344208596|ref|YP_004793737.1| RluA family pseudouridine synthase [Stenotrophomonas maltophilia
JV3]
gi|386719708|ref|YP_006186034.1| ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
maltophilia D457]
gi|343779958|gb|AEM52511.1| pseudouridine synthase, RluA family [Stenotrophomonas maltophilia
JV3]
gi|384079270|emb|CCH13868.1| Ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
maltophilia D457]
Length = 329
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 146/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I LD+++ED ++++NK GLVVHP GN SGTL + LL P + +PRAGI
Sbjct: 77 TDAQPEDIPLDVLFEDEHVLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SG+MVVAK++++ LV QL V R+YLA+V G G +A I R+P
Sbjct: 137 VHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPR 196
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R+KM V + + K A+T+Y ER + H +L C L+TGRTHQIRVHM + H
Sbjct: 197 DRLKMAVRE--DGKEAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHVRH 247
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
I+GD LYG K S L+ F RQALHA L +HP ++ +P+D+
Sbjct: 248 PIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFMHPITGEPVRNTAPVPEDM 307
Query: 246 SKLI 249
L+
Sbjct: 308 LHLM 311
>gi|416157952|ref|ZP_11605391.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 101P30B1]
gi|416222578|ref|ZP_11626182.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 103P14B1]
gi|416229171|ref|ZP_11627960.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 46P47B1]
gi|326562905|gb|EGE13192.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 46P47B1]
gi|326563654|gb|EGE13906.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 103P14B1]
gi|326573262|gb|EGE23230.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 101P30B1]
Length = 355
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 25/239 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +DIIYED +II+NK AG+VVHP GN +GTL + LL +P ++PRAG+VHR+DK+
Sbjct: 118 IDIDIIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKD 177
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK---LNGMINAAIMRNPHNRIK 143
++GL+V+A++ + + L++QLK V R Y + G + I+A I R+ +R K
Sbjct: 178 TTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIALGAVHEVLRHAQIDAPIGRHSTHRTK 237
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHI----SLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V + KPALT+ I+N K++ SL+ +LKTGRTHQIRVH+ ++GH +V
Sbjct: 238 MAVKQ--TGKPALTH-------IVNAKYLHERYSLLDIHLKTGRTHQIRVHLSYVGHPLV 288
Query: 200 GDNLYG---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG ++ L F RQALHAY LG IHP +K+ LP D+ +LI
Sbjct: 289 GDPVYGTSPRSGLSDRQRCAILDFGRQALHAYMLGFIHPVTGEAMKFHAPLPKDMQQLI 347
>gi|94497522|ref|ZP_01304091.1| Pseudouridine synthase, RluD [Sphingomonas sp. SKA58]
gi|94422939|gb|EAT07971.1| Pseudouridine synthase, RluD [Sphingomonas sp. SKA58]
Length = 317
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 149/240 (62%), Gaps = 15/240 (6%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRA 77
T + I L I++ED ++++++K AGLVVHPA GNL GTL + LL ++ V R
Sbjct: 78 TVAQDIPLTIVHEDADLLVVDKPAGLVVHPAAGNLDGTLVNALLHHCAGQLSGIGGVARP 137
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMR 136
GIVHR+DK++SGL+VVAK+ +++ L Q K H ++R Y A+ +GIP G +++ I R
Sbjct: 138 GIVHRIDKDTSGLLVVAKTDRAHEGLARQFKDHSIERAYAAITYGIPVPPAGTVDSWIGR 197
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ +R KM V + K A+T+Y L + +L+ C L+TGRTHQ+RVHM +GH
Sbjct: 198 SDADRKKMAVHREGRGKHAVTHYRTLD----RLRGAALVECRLETGRTHQVRVHMAHIGH 253
Query: 197 GIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
++GD +YG++ ++L F RQALHA LG IHP + L + LP D+ +L++
Sbjct: 254 PLIGDPVYGRERKGFKSILETLGFRRQALHARMLGFIHPVTDEPLMFESALPADVQELLS 313
>gi|336314898|ref|ZP_08569812.1| pseudouridine synthase, RluA family [Rheinheimera sp. A13L]
gi|335880725|gb|EGM78610.1| pseudouridine synthase, RluA family [Rheinheimera sp. A13L]
Length = 324
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 152/258 (58%), Gaps = 24/258 (9%)
Query: 5 GYELIIIK---PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
G E ++I+ P F E + I L+I+YED I+++NK AGLVVHP GN GTL
Sbjct: 61 GGESVLIQAELPDDERF----EAEPIDLNIVYEDEHIMVINKPAGLVVHPGAGNADGTLL 116
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL P + VPRAGIVHRLDK+++GLMV+AK+I + HLV ++ + R+Y A+
Sbjct: 117 NALLHHCPSIAEVPRAGIVHRLDKDTTGLMVIAKTIPAQTHLVEAMQEREITREYEAICH 176
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G ++ I R+P R M V+ + +PA+T+Y + + H L R L++
Sbjct: 177 GTMTAGGTVDEPIGRHPTKRTHMAVTS--SGRPAVTHYRVMEK---FRAHTRL-RLRLES 230
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM ++ + +VGD +Y +K ++L+ F RQALHA L L HP
Sbjct: 231 GRTHQIRVHMTYINYPLVGDPVYAGRPRPPRKADEALLTVLRGFKRQALHAAMLRLAHPI 290
Query: 231 NNLKLKWRINLPDDISKL 248
+ ++W +PDD+ +L
Sbjct: 291 TSEIMEWHAPIPDDMVEL 308
>gi|359451410|ref|ZP_09240811.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20480]
gi|358042629|dbj|GAA77060.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Pseudoalteromonas
sp. BSi20480]
Length = 325
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 148/254 (58%), Gaps = 24/254 (9%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E II P++ N I L+I+YED+ I+++NK GLVVHP GN GT+ + LL
Sbjct: 68 ETIIEAPREYLAQN------IDLNIVYEDDHILVINKPMGLVVHPGAGNPDGTVLNALLH 121
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPK 125
YP +INVPRAGIVHRLDK+++GLMVVAK+I++ HLV L K R+Y A+ G
Sbjct: 122 HYPDIINVPRAGIVHRLDKDTTGLMVVAKTIQAQTHLVKALQKRENFTREYEALCNGTMT 181
Query: 126 LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
GM+ I R+ R M V + KPA+T+Y R+A + H L R L+TGRTH
Sbjct: 182 AGGMVEKPIGRHATQRTHMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTH 235
Query: 186 QIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLK 234
QIRVHM +L H ++GD Y K + L F RQALHA KL + HP
Sbjct: 236 QIRVHMAYLNHPLIGDQSYNGRPRPPKGATPQLFELLRSFKRQALHAVKLSIAHPITGEM 295
Query: 235 LKWRINLPDDISKL 248
+ W+ +PDD+ ++
Sbjct: 296 MTWQAPIPDDMVEM 309
>gi|430750496|ref|YP_007213404.1| RluA family pseudouridine synthase [Thermobacillus composti KWC4]
gi|430734461|gb|AGA58406.1| pseudouridine synthase, RluA family [Thermobacillus composti KWC4]
Length = 317
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 148/230 (64%), Gaps = 18/230 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I L ++YED ++I+++K G+VVHPA G+ SGTL + LL L + R GIVHR+
Sbjct: 93 IPLHVVYEDGDVIVVDKPRGMVVHPAHGHASGTLVNALLHHCRDLSGINGRLRPGIVHRI 152
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++ AK+ +++ L QLK H V+R Y+A+V G +P G I+A I R+PH+R
Sbjct: 153 DKDTSGLLMAAKNDLAHVSLSEQLKAHTVERAYIALVHGNLPHDQGTIDAPIGRDPHDRK 212
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
K V+ KP++T++ ER +L+R L+TGRTHQIRVHM+++GH +
Sbjct: 213 KFAVTA--GGKPSVTHFAVLERFGD-------YTLVRLQLETGRTHQIRVHMKYIGHPLA 263
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG+ +K+L + QALHA LG +HP+ L++ +PDD +++
Sbjct: 264 GDPVYGR--AKTLPLDGQALHAVVLGFVHPRTGEALRFESPIPDDFQRIL 311
>gi|206577750|ref|YP_002237068.1| 23S rRNA pseudouridine synthase D [Klebsiella pneumoniae 342]
gi|290510910|ref|ZP_06550279.1| ribosomal large subunit pseudouridine synthase D [Klebsiella sp.
1_1_55]
gi|206566808|gb|ACI08584.1| ribosomal large subunit pseudouridine synthase D [Klebsiella
pneumoniae 342]
gi|289775903|gb|EFD83902.1| ribosomal large subunit pseudouridine synthase D [Klebsiella sp.
1_1_55]
Length = 326
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 QPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMSHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEEFITALRKFDRQALHATMLRLYHPITGIEMEWHAPIPQDMVELI 309
>gi|148552990|ref|YP_001260572.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
gi|148498180|gb|ABQ66434.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
Length = 321
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 148/261 (56%), Gaps = 19/261 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ G +I P N + I L + YED +I+++K AGLVVHPA GN GTL
Sbjct: 61 VAPGARFAVIVPDPAPAHNAAQD--IPLVVAYEDEHLIVIDKPAGLVVHPAAGNPDGTLV 118
Query: 62 DNLLE----IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117
+ LL + V R GIVHR+DK++SGLMV AK+ +++ L Q H + R+Y
Sbjct: 119 NALLHHCRGSLSGIGGVERPGIVHRIDKDTSGLMVAAKTDPAHVGLAAQFARHSIDRRYR 178
Query: 118 AMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLI 175
A+V G P+L G ++A + R+ +R K+ + + K A+T+Y +I + +L+
Sbjct: 179 AIVAGTPRLAAGTVDAPLARSTADRKKIAIVADGRGKRAVTHYS-----VIEPLRRAALV 233
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK------SLIFNRQALHAYKLGLIHP 229
C L+TGRTHQ+RVHM LGH ++GD +YG+ + L F+RQALHA +LG IHP
Sbjct: 234 ECRLETGRTHQVRVHMASLGHPLLGDPVYGRSRPEHRELLNRLKFHRQALHAARLGFIHP 293
Query: 230 KNNLKLKWRINLPDDISKLIT 250
+ L + +P D+ L +
Sbjct: 294 VTSAALSFDSEIPQDMQDLFS 314
>gi|15599740|ref|NP_253234.1| pseudouridine synthase [Pseudomonas aeruginosa PAO1]
gi|116052689|ref|YP_793005.1| pseudouridine synthase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893639|ref|YP_002442508.1| pseudouridine synthase [Pseudomonas aeruginosa LESB58]
gi|254238708|ref|ZP_04932031.1| pseudouridine synthase [Pseudomonas aeruginosa C3719]
gi|254244558|ref|ZP_04937880.1| pseudouridine synthase [Pseudomonas aeruginosa 2192]
gi|296391365|ref|ZP_06880840.1| pseudouridine synthase [Pseudomonas aeruginosa PAb1]
gi|313107189|ref|ZP_07793388.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa 39016]
gi|355652373|ref|ZP_09056769.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
2_1_26]
gi|392986207|ref|YP_006484794.1| pseudouridine synthase [Pseudomonas aeruginosa DK2]
gi|416858846|ref|ZP_11913561.1| pseudouridine synthase [Pseudomonas aeruginosa 138244]
gi|416877397|ref|ZP_11919797.1| pseudouridine synthase [Pseudomonas aeruginosa 152504]
gi|418584139|ref|ZP_13148204.1| pseudouridine synthase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590192|ref|ZP_13154105.1| pseudouridine synthase [Pseudomonas aeruginosa MPAO1/P2]
gi|419752089|ref|ZP_14278498.1| pseudouridine synthase [Pseudomonas aeruginosa PADK2_CF510]
gi|420138346|ref|ZP_14646275.1| pseudouridine synthase [Pseudomonas aeruginosa CIG1]
gi|421155964|ref|ZP_15615423.1| pseudouridine synthase [Pseudomonas aeruginosa ATCC 14886]
gi|421170312|ref|ZP_15628274.1| pseudouridine synthase [Pseudomonas aeruginosa ATCC 700888]
gi|421176802|ref|ZP_15634461.1| pseudouridine synthase [Pseudomonas aeruginosa CI27]
gi|421182605|ref|ZP_15640079.1| pseudouridine synthase [Pseudomonas aeruginosa E2]
gi|421519098|ref|ZP_15965770.1| pseudouridine synthase [Pseudomonas aeruginosa PAO579]
gi|12231021|sp|P33640.2|RLUD_PSEAE RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|9950788|gb|AAG07932.1|AE004868_3 pseudouridine synthase [Pseudomonas aeruginosa PAO1]
gi|115587910|gb|ABJ13925.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126170639|gb|EAZ56150.1| pseudouridine synthase [Pseudomonas aeruginosa C3719]
gi|126197936|gb|EAZ61999.1| pseudouridine synthase [Pseudomonas aeruginosa 2192]
gi|218773867|emb|CAW29681.1| pseudouridine synthase [Pseudomonas aeruginosa LESB58]
gi|310879890|gb|EFQ38484.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa 39016]
gi|334838996|gb|EGM17695.1| pseudouridine synthase [Pseudomonas aeruginosa 138244]
gi|334839644|gb|EGM18322.1| pseudouridine synthase [Pseudomonas aeruginosa 152504]
gi|354824204|gb|EHF08458.1| ribosomal large subunit pseudouridine synthase D [Pseudomonas sp.
2_1_26]
gi|375046268|gb|EHS38833.1| pseudouridine synthase [Pseudomonas aeruginosa MPAO1/P1]
gi|375050965|gb|EHS43440.1| pseudouridine synthase [Pseudomonas aeruginosa MPAO1/P2]
gi|384401666|gb|EIE48020.1| pseudouridine synthase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321712|gb|AFM67092.1| pseudouridine synthase [Pseudomonas aeruginosa DK2]
gi|403248926|gb|EJY62453.1| pseudouridine synthase [Pseudomonas aeruginosa CIG1]
gi|404346083|gb|EJZ72434.1| pseudouridine synthase [Pseudomonas aeruginosa PAO579]
gi|404519557|gb|EKA30291.1| pseudouridine synthase [Pseudomonas aeruginosa ATCC 14886]
gi|404523844|gb|EKA34236.1| pseudouridine synthase [Pseudomonas aeruginosa ATCC 700888]
gi|404530439|gb|EKA40439.1| pseudouridine synthase [Pseudomonas aeruginosa CI27]
gi|404541753|gb|EKA51102.1| pseudouridine synthase [Pseudomonas aeruginosa E2]
gi|453046119|gb|EME93836.1| pseudouridine synthase [Pseudomonas aeruginosa PA21_ST175]
Length = 320
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 81 IELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 201 VD--AGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP+D L++
Sbjct: 255 RFRIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLWLLSL 310
>gi|187932847|ref|YP_001886621.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
gi|187721000|gb|ACD22221.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
Length = 302
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 158/250 (63%), Gaps = 18/250 (7%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E++I P+ K E + I LDI+YED ++I++NK G+VVHPA GN +GTL + LL
Sbjct: 60 EIVITMPEAETL--KVESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLF 117
Query: 67 IYPFLIN---VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
L + V R GIVHR+DK++SG++V+AK+ +S+ L QLK H + R+Y A+V G
Sbjct: 118 HCTDLSSINGVIRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHSMNREYYALVEGR 177
Query: 124 PKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYE---RLATGIINKKHISLIRCNL 179
K + G+I+ + R+ NR+K+ ++++ + A+T+YE R TG +LI+C L
Sbjct: 178 FKNDSGIIDKPLGRDKKNRLKIAITED--GRRAITHYEVLERYDTGC------TLIKCKL 229
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
+TGRTHQIRVHM LGH +VGD LYG K K Q LHA KLG IHP N +++
Sbjct: 230 ETGRTHQIRVHMASLGHPLVGDPLYGFKKQK-FKLKGQMLHAKKLGFIHPTKNEYMEFET 288
Query: 240 NLPDDISKLI 249
NLP+ ++I
Sbjct: 289 NLPEYFEEII 298
>gi|416234455|ref|ZP_11629840.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 12P80B1]
gi|326565266|gb|EGE15451.1| ribosomal large subunit pseudouridine synthase D [Moraxella
catarrhalis 12P80B1]
Length = 355
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 25/239 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +DIIYED +II+NK AG+VVHP GN +GTL + LL +P ++PRAG+VHR+DK+
Sbjct: 118 IDIDIIYEDEAVIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKD 177
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK---LNGMINAAIMRNPHNRIK 143
++GL+V+A++ + + L++QLK V R Y + G + I+A I R+ +R K
Sbjct: 178 TTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCIALGAVHEVLRHAQIDAPIGRHSTHRTK 237
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHI----SLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V + KPALT+ I+N K++ SL+ +LKTGRTHQIRVH+ ++GH +V
Sbjct: 238 MAVKQ--TGKPALTH-------IVNAKYLHERYSLLDIHLKTGRTHQIRVHLSYVGHPLV 288
Query: 200 GDNLYG---------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +YG ++ L F RQALHAY LG IHP +K+ LP D+ +LI
Sbjct: 289 GDPVYGTSPRSGLSDRQRCAILDFGRQALHAYMLGFIHPVTGEAMKFHAPLPKDMQQLI 347
>gi|389876793|ref|YP_006370358.1| Pseudouridylate synthase, 23S RNA-specific [Tistrella mobilis
KA081020-065]
gi|388527577|gb|AFK52774.1| Pseudouridylate synthase, 23S RNA-specific [Tistrella mobilis
KA081020-065]
Length = 405
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 23/251 (9%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVP-R 76
+ E + + LDI+YED +I+++K AGLVVHP GN GTL LL + I P R
Sbjct: 152 RLEPEPMALDIVYEDEWLIVVDKPAGLVVHPGAGNDRGTLVSGLLAHGDGRLSSIGAPTR 211
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIM 135
G+VHR+DK++SGL+V AK+ +++ L Q H ++R Y A+VWG+P ++ G I I
Sbjct: 212 PGVVHRIDKDTSGLIVFAKTDAAHLALARQFADHTIRRAYTAIVWGVPAVDPGRIEGNIG 271
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLA--TGII---NKKHISLIRCNLKTGRTHQIRVH 190
R+ +R +M V KPA+T+Y R+A G++ K S++ C L+TGRTHQIRVH
Sbjct: 272 RHATDRQRMAVVTR-GGKPAVTHY-RIANMVGVVEVSEKPLASVLDCRLETGRTHQIRVH 329
Query: 191 MQWLGHGIVGDNLYGKKYSK-----------SLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
+ +GH +VGD +YG+ ++ F RQALHA +LG +HP +LK+
Sbjct: 330 LSHVGHPLVGDPVYGRSPARLQRMEDPRIKAMCSFPRQALHARRLGFVHPVTGRRLKFES 389
Query: 240 NLPDDISKLIT 250
LP D+ +L+
Sbjct: 390 PLPQDMRELLA 400
>gi|49083826|gb|AAT51150.1| PA4544, partial [synthetic construct]
Length = 321
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 81 IELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 201 VD--AGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP+D L++
Sbjct: 255 RFRIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLWLLSL 310
>gi|386829450|ref|ZP_10116557.1| pseudouridine synthase, RluA family [Beggiatoa alba B18LD]
gi|386430334|gb|EIJ44162.1| pseudouridine synthase, RluA family [Beggiatoa alba B18LD]
Length = 319
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 148/234 (63%), Gaps = 17/234 (7%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L I+YED +II++NK AG+VVHP GN TL + LL P L +PRAGI+HR+DK++S
Sbjct: 83 LKILYEDKDIIVVNKDAGVVVHPGAGNPDKTLVNALLNHAPELAQLPRAGIIHRIDKDTS 142
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK 148
G++VVA+S+ ++ LV QL+ +R+Y A+V G+ G ++A + R+P +R KM V
Sbjct: 143 GILVVARSLPAHTSLVEQLQAREFKREYQAIVTGMMVAGGTVDAPMDRHPVHRTKMAVVA 202
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK- 207
+ KPA+T+Y + ++ +LIR L+TGRTHQIRVH+ + + +VGD +YG +
Sbjct: 203 --HGKPAVTHYRVMQRFRVH----TLIRAILETGRTHQIRVHLSHVHYPLVGDPVYGGRL 256
Query: 208 -----YSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
S L F RQALHA KLGLIHP + ++W++ +P D+ LI
Sbjct: 257 HIPPASSPELQEALRQFKRQALHAEKLGLIHPTQDEYMEWQVPIPADMQHLINL 310
>gi|335040592|ref|ZP_08533718.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334179562|gb|EGL82201.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 302
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 158/249 (63%), Gaps = 17/249 (6%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
Y ++ + P + + E + + LDI+YED +++++NK GLVVHPA G+ SGTL + LL
Sbjct: 62 YVVLRVPPPRELSI---EPEQMDLDIVYEDEDVLVVNKPRGLVVHPAPGHYSGTLVNGLL 118
Query: 66 EIYPFLINVP---RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
L + R GIVHR+DK++SGL++VAK+ ++++ L QL H V RKY+A+V G
Sbjct: 119 AHCQNLSGINGILRPGIVHRIDKDTSGLLMVAKNDRAHLSLAKQLSEHRVIRKYVALVHG 178
Query: 123 -IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLK 180
+ +G INA I RNPHNR +M V KPA+T+++ +I + +LI C L+
Sbjct: 179 QVGHNSGTINAPIGRNPHNRQQMAVVS--GGKPAVTHFQ-----VIKRFNRYTLIECQLE 231
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVH++++GH + GD +YG +K+L QALHA LG HP ++ +
Sbjct: 232 TGRTHQIRVHLKYIGHPLAGDPVYGP--AKTLPIKGQALHAKVLGFEHPATGRQMIFDSP 289
Query: 241 LPDDISKLI 249
LP+D+ ++I
Sbjct: 290 LPEDMEEII 298
>gi|419701435|ref|ZP_14229035.1| 23S rRNA pseudouridine synthase D [Escherichia coli SCI-07]
gi|422382966|ref|ZP_16463118.1| pseudouridine synthase, RluA family [Escherichia coli MS 57-2]
gi|432733333|ref|ZP_19968161.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE45]
gi|432760420|ref|ZP_19994912.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE46]
gi|324005834|gb|EGB75053.1| pseudouridine synthase, RluA family [Escherichia coli MS 57-2]
gi|380347352|gb|EIA35640.1| 23S rRNA pseudouridine synthase D [Escherichia coli SCI-07]
gi|431274086|gb|ELF65150.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE45]
gi|431306885|gb|ELF95187.1| ribosomal large subunit pseudouridine synthase D [Escherichia coli
KTE46]
Length = 326
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL Y + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYSPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>gi|416074802|ref|ZP_11584700.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337770|ref|ZP_21151701.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006610|gb|EGY47013.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443546312|gb|ELT55987.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 324
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 147/245 (60%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKIIREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V + +KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAV--HPMSKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMSVLRNFKRQALHAVMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|107099793|ref|ZP_01363711.1| hypothetical protein PaerPA_01000811 [Pseudomonas aeruginosa PACS2]
gi|386060696|ref|YP_005977218.1| pseudouridine synthase [Pseudomonas aeruginosa M18]
gi|386064008|ref|YP_005979312.1| pseudouridine synthase [Pseudomonas aeruginosa NCGM2.S1]
gi|424944690|ref|ZP_18360453.1| pseudouridine synthase [Pseudomonas aeruginosa NCMG1179]
gi|451983097|ref|ZP_21931392.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa 18A]
gi|346061136|dbj|GAA21019.1| pseudouridine synthase [Pseudomonas aeruginosa NCMG1179]
gi|347307002|gb|AEO77116.1| pseudouridine synthase [Pseudomonas aeruginosa M18]
gi|348032567|dbj|BAK87927.1| pseudouridine synthase [Pseudomonas aeruginosa NCGM2.S1]
gi|451759231|emb|CCQ83915.1| Ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa 18A]
Length = 317
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 78 IELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKD 137
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 138 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAV 197
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 198 VD--AGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 251
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP+D L++
Sbjct: 252 RFRIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLWLLSL 307
>gi|289209195|ref|YP_003461261.1| pseudouridine synthase [Thioalkalivibrio sp. K90mix]
gi|288944826|gb|ADC72525.1| pseudouridine synthase, RluA family [Thioalkalivibrio sp. K90mix]
Length = 319
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 150/259 (57%), Gaps = 18/259 (6%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E ++++P + L + E + I LDI++ED ++++NK AGLVVHPA G+ +GTL +
Sbjct: 56 VQGGEHVVLEPPEAPVL-EAEPEPIALDIVHEDPAVLVINKPAGLVVHPAAGHRAGTLVN 114
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P L +PRAG+VHRLDK+++GLMVVA++ ++ LV QL+ V R+Y A+V G
Sbjct: 115 ALLHHDPNLSQLPRAGVVHRLDKDTTGLMVVARTPQAQTALVRQLQQRTVHREYRALVQG 174
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
I I R+P +R + V+ KPA+T+Y R+A +L+ L+TG
Sbjct: 175 RVISGATIEEPIGRHPVDRKRQAVTG--GGKPAVTHY-RVAERFPAH---TLLNVRLETG 228
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKN 231
RTHQIRVHM + H IVGD YG + + F RQALHA +L HP +
Sbjct: 229 RTHQIRVHMAHIRHPIVGDPAYGGRPRPVRGMGEAAKAALAAFRRQALHAARLEFEHPDS 288
Query: 232 NLKLKWRINLPDDISKLIT 250
L + +P+D L+
Sbjct: 289 GEVLAFEAPVPEDFEALLA 307
>gi|152986388|ref|YP_001350515.1| pseudouridine synthase [Pseudomonas aeruginosa PA7]
gi|452876697|ref|ZP_21954038.1| pseudouridine synthase [Pseudomonas aeruginosa VRFPA01]
gi|150961546|gb|ABR83571.1| pseudouridine synthase [Pseudomonas aeruginosa PA7]
gi|452186519|gb|EME13537.1| pseudouridine synthase [Pseudomonas aeruginosa VRFPA01]
Length = 320
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI++ED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 81 IELDIVHEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPGIANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 201 VD--AGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP+D L++
Sbjct: 255 RFKIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLWLLSL 310
>gi|325860234|ref|ZP_08173359.1| pseudouridine synthase, RluA family [Prevotella denticola CRIS
18C-A]
gi|325482321|gb|EGC85329.1| pseudouridine synthase, RluA family [Prevotella denticola CRIS
18C-A]
Length = 361
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 155/278 (55%), Gaps = 39/278 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LDI+YED+ ++++NK AGLVVHP GN GTL + +
Sbjct: 90 LMLDRPKHD---NTIEAEDIPLDIVYEDDVLMVINKPAGLVVHPGAGNFHGTLINAVAWH 146
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L ++ F N P G+VHR+DK++SGL+VVAK+ + L Q R Y A+VWG
Sbjct: 147 LKDMPAFDPNDPEVGLVHRIDKDTSGLLVVAKTPDAKTDLGRQFFNKTTHRSYNALVWGN 206
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
+ G I I R+P +R++M V + KPA+T+Y ER + +LI C
Sbjct: 207 FTEEEGRIEGNIARDPRDRLRMAVFPPGSETGKPAVTHYRVIERFG-------YTTLIEC 259
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYG-------------KKYSKSL--IFNRQALHAY 222
L+TGRTHQIR HM+ +GH + GD YG K + ++ I NRQALHA
Sbjct: 260 VLETGRTHQIRAHMKHIGHPLFGDERYGGTEILRGQRSSTYKAFIRNCLAICNRQALHAR 319
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLIT----FSGIKW 256
LG +HP ++ + LPDD++ LI F G KW
Sbjct: 320 TLGFVHPVTGRQMDFTSGLPDDLAALIEKWRGFVGGKW 357
>gi|237809510|ref|YP_002893950.1| RluA family pseudouridine synthase [Tolumonas auensis DSM 9187]
gi|237501771|gb|ACQ94364.1| pseudouridine synthase, RluA family [Tolumonas auensis DSM 9187]
Length = 326
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L+I+YED +++++K AGLVVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 QAQDLPLNIVYEDEHLLVIDKPAGLVVHPGAGTPDGTVLNALLHRYPDIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK ++GLMVVAK+I + I LV L+ + R+Y A+V G G ++ I R+ R
Sbjct: 138 LDKETTGLMVVAKTIPAQIRLVYALQKRRITREYEAIVVGHMTAGGTVDEPISRHSTQRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V N KPA+T+Y R+A + H L RC L+TGRTHQIRVHM + H +VGD
Sbjct: 198 MMAV--NPMGKPAITHY-RVAERF--RAHTRL-RCRLETGRTHQIRVHMAHINHALVGDP 251
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG + S L F RQALHA L L HP +++W +PDD+ +LI
Sbjct: 252 VYGGRLRPIRNASVELSDFLRTFRRQALHATMLRLTHPITGEEMEWHSPIPDDMVQLI 309
>gi|440229577|ref|YP_007343370.1| pseudouridine synthase, RluA family [Serratia marcescens FGI94]
gi|440051282|gb|AGB81185.1| pseudouridine synthase, RluA family [Serratia marcescens FGI94]
Length = 325
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDGDILVINKPRDLVVHPGAGNPDGTVLNALLYHYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGTMTAGGTVEEPIARHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIHTLRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLI 309
>gi|410084772|ref|ZP_11281493.1| Ribosomal large subunit pseudouridine synthase D [Morganella
morganii SC01]
gi|421494134|ref|ZP_15941486.1| RLUD [Morganella morganii subsp. morganii KT]
gi|455738461|ref|YP_007504727.1| Ribosomal large subunit pseudouridine synthase D [Morganella
morganii subsp. morganii KT]
gi|400191691|gb|EJO24835.1| RLUD [Morganella morganii subsp. morganii KT]
gi|409768417|gb|EKN52477.1| Ribosomal large subunit pseudouridine synthase D [Morganella
morganii SC01]
gi|455420024|gb|AGG30354.1| Ribosomal large subunit pseudouridine synthase D [Morganella
morganii subsp. morganii KT]
Length = 325
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + + L+I+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQNLPLNIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLYHYPDIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVANGRMTAGGKVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V N KPA+T+Y + + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--NPMGKPAVTHYRVMEH---FRAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDQ 251
Query: 203 LYG----------KKYSKSL-IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG ++ +L F+RQALHA L L HP ++++W +PDD+ KLI
Sbjct: 252 LYGGRPRPLKGASDEFRDALREFDRQALHATMLRLYHPITGIQMEWHAPIPDDMVKLI 309
>gi|357419773|ref|YP_004932765.1| pseudouridine synthase [Thermovirga lienii DSM 17291]
gi|355397239|gb|AER66668.1| pseudouridine synthase, RluA family [Thermovirga lienii DSM 17291]
Length = 329
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 146/246 (59%), Gaps = 12/246 (4%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
SG E+++ P E + D++YED +III+NK AG+ VHP+ G+ GTL
Sbjct: 76 SGMEIVVKIPVAEAITLTPE--YVPFDVLYEDEDIIIINKPAGVAVHPSPGHWKGTLVQG 133
Query: 64 LLEIYPFLI---NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
LL YP L N R GIVHRLD +SGLMV+AK IK++ + K V+++YLA+V
Sbjct: 134 LLHRYPELFSGENSLRPGIVHRLDLGTSGLMVIAKHIKAHERMSMLFKTRSVKKEYLALV 193
Query: 121 WGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
WG P K++G+I+ I R+ NR++M ++ K A+T YE L T + SL+RC +
Sbjct: 194 WGCPRKVSGLIDMPIGRDSRNRLRMAITPK--GKRAITRYEVLWT----RNGFSLVRCRI 247
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
TGRTHQIRVH + LG +VGD LY + + R LHA++L HP + + +R
Sbjct: 248 YTGRTHQIRVHFKSLGCPVVGDKLYAPRRERVFDSERIFLHAWRLAFPHPMTGVDVSFRS 307
Query: 240 NLPDDI 245
LP+D+
Sbjct: 308 PLPEDL 313
>gi|50085931|ref|YP_047441.1| ribosomal large subunit pseudouridine synthase D (pseudouridylate
synthase) (Uracil hydrolyase) [Acinetobacter sp. ADP1]
gi|49531907|emb|CAG69619.1| ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase) [Acinetobacter sp. ADP1]
Length = 350
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 23/242 (9%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
++ + I LDI+YED +I+++NK AG+VVHP GN SGTL + LL YP + + RAG+VH
Sbjct: 108 SQPENIPLDIVYEDQDILVINKPAGMVVHPGAGNPSGTLVNALLYHYPKAVELSRAGLVH 167
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
R+DK++SGL+VVAK++++ L QL V R Y +V+G G I+ I R+P +R
Sbjct: 168 RIDKDTSGLLVVAKNLEAQFSLSKQLADKSVYRIYDLVVYGNIIAGGTIDEQIKRHPVDR 227
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
IKM + + A+T+Y ER +H + ++ L+TGRTHQIRVH ++GHG+
Sbjct: 228 IKMAILP--GGREAVTHYNVKERF-------QHFTRVQAQLETGRTHQIRVHFSYIGHGL 278
Query: 199 VGDNLY----------GKKYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
VGD +Y ++ ++L F RQALHA KLGL+HP+ ++ + P+D ++
Sbjct: 279 VGDPVYMSRVRVPAGASERLGQTLRGFKRQALHASKLGLVHPRTQEEMMFEAPWPEDFTQ 338
Query: 248 LI 249
L+
Sbjct: 339 LL 340
>gi|456352961|dbj|BAM87406.1| pseudouridine synthase [Agromonas oligotrophica S58]
Length = 379
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 151/245 (61%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L I+YED++II+++K +GLVVHPA G+ SGTL + L+ ++ V R GIVHR
Sbjct: 129 IPLTIVYEDDDIIVIDKPSGLVVHPAAGHESGTLVNALIAHCGASLSGIGGVKRPGIVHR 188
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMVVAK+ ++ L Q H ++R YLA WG+P + +G INA I R+
Sbjct: 189 LDKDTTGLMVVAKNDHAHASLSAQFADHGRTGAMERGYLAFAWGLPHRPHGTINAPIDRH 248
Query: 138 PHNRIKMTVSKNFNAKPALTYYE--RLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PH R KM V + A+T+YE TG K +LI C+L+TGRTHQIRVH+ LG
Sbjct: 249 PHARDKMAVRPK--GREAITHYEVQESFTGRDGKPVAALIACHLETGRTHQIRVHLAHLG 306
Query: 196 HGIVGDNLYGKKY----------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD++YG + +++ + RQALHAY L + HP+ ++W LP+
Sbjct: 307 HPLMGDSVYGPHFKTKANQLAPGARAALESLGRQALHAYLLVIEHPRTGDIMRWESELPE 366
Query: 244 DISKL 248
D+S L
Sbjct: 367 DLSLL 371
>gi|395790169|ref|ZP_10469663.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
gi|395426820|gb|EJF92938.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
Length = 334
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 150/251 (59%), Gaps = 26/251 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ I LDI++ED+ +I++NK AGLVVHP GN SGTL + L+ E + V R GIV
Sbjct: 77 EAIALDILFEDDHVIVINKPAGLVVHPGNGNWSGTLVNALVYHCGESLSGIGGVKRPGIV 136
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMINAAIM 135
HRLDKN+SG+MVVAK+ ++ L Q H + R+Y A++WG P N I+AA+
Sbjct: 137 HRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTSALDRRYHALIWGSPNRNVWTIDAALG 196
Query: 136 RNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
R+PHNR K V +K+F+A+ A+T++ E+ SL+ C L+TGRTHQIRVH
Sbjct: 197 RSPHNRTKQAVVHNKSFHARHAITHFSLLEKYGISTDTTSFASLLECRLETGRTHQIRVH 256
Query: 191 MQWLGHGIVGDNLYGKKY-SKSLI-----------FNRQALHAYKLGLIHPKNNLKLKWR 238
M +GH +VGD +YG + +KS I FNRQALHA L HP + +
Sbjct: 257 MAHIGHPLVGDTVYGNAFKTKSNIFDPIIKNAIDQFNRQALHATSLTFEHPATGKVMSFS 316
Query: 239 INLPDDISKLI 249
LP D+ +LI
Sbjct: 317 SPLPQDMIELI 327
>gi|254523997|ref|ZP_05136052.1| ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
sp. SKA14]
gi|219721588|gb|EED40113.1| ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
sp. SKA14]
Length = 329
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 145/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I LD+++ED ++++NK GLVVHP GN SGTL + LL P + +PRAGI
Sbjct: 77 TDAQPEDIPLDVLFEDEHLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SG+MVVAK++++ LV QL V R+YLA+V G G +A I R+P
Sbjct: 137 VHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPR 196
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R+KM V + + K A+T+Y ER + H +L C L+TGRTHQIRVHM + H
Sbjct: 197 DRLKMAVRE--DGKEAITHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHVRH 247
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
I+GD LYG K S L+ F RQALHA L HP ++ +P+D+
Sbjct: 248 PIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFTHPITGEPVRNTAPVPEDM 307
Query: 246 SKLI 249
L+
Sbjct: 308 LHLM 311
>gi|422337112|ref|ZP_16418084.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
aphrophilus F0387]
gi|353345664|gb|EHB89955.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
aphrophilus F0387]
Length = 324
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 144/245 (58%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPKGTVLNALLYHYPQIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER + + +R L+TGRTHQIRVHM L H
Sbjct: 194 KRTHMAVHP--MGKPAITHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHLAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMNVLRNFKRQALHAIMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|329895229|ref|ZP_08270893.1| Ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium IMCC3088]
gi|328922467|gb|EGG29809.1| Ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium IMCC3088]
Length = 317
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I +DI+YED ++I++NK GLVVHPA GN GTL + LL L VPRAG+VHR
Sbjct: 77 QPQAIPMDIVYEDEDVIVVNKPVGLVVHPAAGNWDGTLVNALLAHDASLEQVPRAGVVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SGLMVVAK+++S+ LV L+ V R+Y+A+ G G+++A I R+P R
Sbjct: 137 LDKDTSGLMVVAKTLQSHTALVEALQQREVSRQYIAIAHGSMTGGGVVDAPIGRHPTMRQ 196
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V + KPA T+Y +R KH + + L+TGRTHQIRVHM H +V
Sbjct: 197 KMAVVA--SGKPARTHYSLGQRF-------KHFTELHLKLETGRTHQIRVHMAHKKHPLV 247
Query: 200 GDNLYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD++YG + + L+ F RQALHA L HP ++ + + +PDD+ +L
Sbjct: 248 GDSVYGGRARVPGNSAPELVNAIREFPRQALHAKALAFFHPISDEWMSFDAPIPDDMQQL 307
Query: 249 I 249
+
Sbjct: 308 L 308
>gi|188590369|ref|YP_001921578.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
gi|188500650|gb|ACD53786.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
Length = 302
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 158/250 (63%), Gaps = 18/250 (7%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E++I P+ K E + I LDI+YED ++I++NK G+VVHPA GN +GTL + LL
Sbjct: 60 EIVITMPEAEIL--KVESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLF 117
Query: 67 IYPFLIN---VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
L + V R GIVHR+DK++SG++V+AK+ +S+ L QLK H + R+Y A+V G
Sbjct: 118 HCTDLSSINGVIRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHSMNREYYALVEGR 177
Query: 124 PKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNL 179
K + G+I+ + R+ NR+K+ +++ + + A+T+Y ER TG +LI+C L
Sbjct: 178 FKNDSGVIDKPLGRDKKNRLKIAITE--DGRRAITHYEVLERYDTG------CTLIKCKL 229
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
+TGRTHQIRVHM LGH +VGD LYG K + Q LHA KLG IHP N +++
Sbjct: 230 ETGRTHQIRVHMASLGHPLVGDPLYGFKKQR-FKLKGQMLHAKKLGFIHPTKNEYMEFET 288
Query: 240 NLPDDISKLI 249
NLP+ ++I
Sbjct: 289 NLPEYFEEII 298
>gi|261867120|ref|YP_003255042.1| 23S rRNA pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365966920|ref|YP_004948482.1| 23S rRNA pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|415767502|ref|ZP_11483174.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416084500|ref|ZP_11587036.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|416107247|ref|ZP_11590334.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444346868|ref|ZP_21154826.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412452|gb|ACX81823.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348005577|gb|EGY46054.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348010392|gb|EGY50442.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348658438|gb|EGY76006.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365745833|gb|AEW76738.1| 23S rRNA pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443541160|gb|ELT51624.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 324
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 146/245 (59%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKIIREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V + KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAV--HPMGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMSVLRNFKRQALHAVMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|242240266|ref|YP_002988447.1| pseudouridine synthase [Dickeya dadantii Ech703]
gi|242132323|gb|ACS86625.1| pseudouridine synthase, RluA family [Dickeya dadantii Ech703]
Length = 325
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 144/239 (60%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I+LDI+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 DAQPIQLDIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHHYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKNVPAQTRLVESLQAREITREYEAVANGTMTAGGSVAEPIARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S + F+RQALHA L L HP + ++++W LP D+ +LI
Sbjct: 252 LYGGRPRFPKGASDEFLTVLRHFDRQALHATMLRLYHPISCIEMEWHAPLPQDMVELIA 310
>gi|327312694|ref|YP_004328131.1| RluA family pseudouridine synthase [Prevotella denticola F0289]
gi|326946223|gb|AEA22108.1| pseudouridine synthase, RluA family [Prevotella denticola F0289]
Length = 361
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 155/278 (55%), Gaps = 39/278 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LDI+YED+ ++++NK AGLVVHP GN GTL + +
Sbjct: 90 LMLDRPKHD---NTIEAEDIPLDIVYEDDVLMVINKPAGLVVHPGAGNFHGTLINAVAWH 146
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L ++ F N P G+VHR+DK++SGL+VVAK+ + L Q R Y A+VWG
Sbjct: 147 LKDMPAFDPNDPEVGLVHRIDKDTSGLLVVAKTPDAKTDLGRQFFNKTTHRSYNALVWGN 206
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
+ G I I R+P +R++M V + KPA+T+Y ER + +LI C
Sbjct: 207 FTEEEGRIEGNIARDPRDRLRMAVFPPGSETGKPAVTHYRVIERFG-------YTTLIEC 259
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYG-------------KKYSKSL--IFNRQALHAY 222
L+TGRTHQIR HM+ +GH + GD YG K + ++ I NRQALHA
Sbjct: 260 ILETGRTHQIRAHMKHIGHPLFGDERYGGTEILRGQRSSTYKAFIRNCLAICNRQALHAR 319
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLIT----FSGIKW 256
LG +HP ++ + LPDD++ LI F G KW
Sbjct: 320 TLGFVHPVTGRQMDFTSGLPDDLAALIEKWRGFVGGKW 357
>gi|390443530|ref|ZP_10231320.1| RluA family pseudouridine synthase [Nitritalea halalkaliphila LW7]
gi|389666411|gb|EIM77860.1| RluA family pseudouridine synthase [Nitritalea halalkaliphila LW7]
Length = 349
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 148/252 (58%), Gaps = 29/252 (11%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP----RAGIVHR 82
I LDI++ED ++++NK AG+VVHPA GN SGTL + L+ + L +P R G+VHR
Sbjct: 98 IPLDIVFEDETLLVVNKPAGMVVHPAHGNWSGTLVNALVHHFQQLPTLPGNSGRPGLVHR 157
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNR 141
+DK++SGL+V+AK+ + L Q H ++R+Y A+VWG P+ G I+AAI R+ +R
Sbjct: 158 IDKDTSGLLVIAKTEDAMTSLARQFFDHSIEREYYALVWGEPQSETGTIDAAIGRSAKDR 217
Query: 142 IKMTV-SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
M N KPA T+++ L N +++SLI C L+TGRTHQIR HM++LGH +
Sbjct: 218 KVMEAFPDNSQGKPARTHWKVLQ----NLRYVSLIACQLETGRTHQIRAHMKFLGHPLFN 273
Query: 201 DNLY-GKKYSKSLIFN--------------RQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
D +Y G K K F+ RQALHA LG +HP KL + LP+D
Sbjct: 274 DAMYGGDKIRKGTTFSQYQAFIKNCFQLLPRQALHARSLGFVHPVTKEKLYFECPLPEDF 333
Query: 246 SKLITFSGIKWI 257
+++ KW
Sbjct: 334 QQVLD----KWT 341
>gi|435853644|ref|YP_007314963.1| pseudouridine synthase, RluA family [Halobacteroides halobius DSM
5150]
gi|433670055|gb|AGB40870.1| pseudouridine synthase, RluA family [Halobacteroides halobius DSM
5150]
Length = 305
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 162/249 (65%), Gaps = 18/249 (7%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL-- 65
LII +PK+ E + I L+I+Y+DN+II++NK LVVHPA G+ SGTL + LL
Sbjct: 64 LIIPEPKELDL----EPQDIPLNILYDDNDIIVINKQPDLVVHPAPGHESGTLVNALLYH 119
Query: 66 -EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
+ + V R GIVHRLDK++SG MVVAK+ +++I L Q K ++ Y +V+G
Sbjct: 120 CDNLSGINGVIRPGIVHRLDKDTSGAMVVAKNDEAHIELARQFKERETKKIYTTLVYGRV 179
Query: 125 KLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKH--ISLIRCNLKT 181
+ N G ++AAI R+P++R KM V+ N+K A++Y+E + K++ +L+ L+T
Sbjct: 180 RYNKGQVDAAIGRDPYDRKKMAVTSK-NSKKAISYFE------VKKRYSDYTLVEVKLET 232
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYGKKYSKS-LIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
GRTHQIR+HM ++GH IVGD LYG K +K+ L +RQ LHA KLGL HP+ +++
Sbjct: 233 GRTHQIRLHMDYMGHSIVGDELYGPKLTKTKLDVSRQMLHARKLGLYHPRTGDWMEFDAP 292
Query: 241 LPDDISKLI 249
L DD+ +++
Sbjct: 293 LLDDMKQVL 301
>gi|1143378|dbj|BAA09443.1| ORFX [Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023]
Length = 317
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 143/237 (60%), Gaps = 14/237 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAG 78
E + I L+I++ED ++++NK AG+VVHPA GN TL + LL ++ V R G
Sbjct: 76 EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHR+DK++SGL+VVAK+ ++ L Q H + R+Y A+V G P L G ++A + R+
Sbjct: 136 IVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGNPSLQGHVDAPLARSS 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM + + K A+T+Y I K+ SLI C L+TGRTHQ+RVHM +GH +
Sbjct: 196 VNRQKMAIVSDGRGKRAVTHY----CMITPLKNASLIECRLETGRTHQVRVHMSSIGHSL 251
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+GD +YG+ +SL F RQALHA LG IHP + ++ + +P D+ L
Sbjct: 252 LGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDMQLLF 308
>gi|99034795|ref|ZP_01314715.1| hypothetical protein Wendoof_01000461 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 276
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 156/260 (60%), Gaps = 30/260 (11%)
Query: 10 IIKPKKNFFLNKTEKKV---------IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
I+KP + + ++ + + IKL+I+YED +II+L+K +GL VHP +GT
Sbjct: 20 IVKPDEEYVVHLVQPDISTSIEPNYDIKLNIVYEDEDIIVLSKQSGLTVHPG----AGTN 75
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
D LL +NV R GIVHRLDK++SGLMV+AK+ ++ L L ++R+YLA+V
Sbjct: 76 NDTLLNAVIAHLNV-RPGIVHRLDKDTSGLMVIAKNEAAHSFLSELLSNRKIKREYLAVV 134
Query: 121 WG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
WG + G I +I N+ M V+K K A+T+Y L +I + +SL++C L
Sbjct: 135 WGTLSSQQGTIKTSIAPKRGNKEMMCVTK-ITGKLAITHY--LVQKVIGQ--VSLVKCTL 189
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI----------FNRQALHAYKLGLIHP 229
+TGRTHQIRVHM +GH IVGD +YGK SKS FNRQALHAY LGL HP
Sbjct: 190 ETGRTHQIRVHMSHIGHSIVGDQVYGKNSSKSTKYAKNSSFIRNFNRQALHAYTLGLYHP 249
Query: 230 KNNLKLKWRINLPDDISKLI 249
K+ +++ +LP DI LI
Sbjct: 250 KSKEYMEFVSDLPQDIKTLI 269
>gi|149187050|ref|ZP_01865357.1| pseudouridine synthase D large subunit [Erythrobacter sp. SD-21]
gi|148829339|gb|EDL47783.1| pseudouridine synthase D large subunit [Erythrobacter sp. SD-21]
Length = 318
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 145/242 (59%), Gaps = 17/242 (7%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPR 76
+T + I LD+++ED ++++NK AG+VVHPA GN GTL + LL ++ V R
Sbjct: 72 ETVAQDIPLDVVFEDAYLLVVNKPAGMVVHPAAGNPDGTLVNALLHHCAGRLSGINGVAR 131
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIM 135
GIVHR+DK++SGL+VVAKS ++ L Q H + R+YLA G P +G ++ I
Sbjct: 132 PGIVHRIDKDTSGLLVVAKSDAAHEGLAKQFADHSITRRYLAACAGHPNPPSGTVSGRIG 191
Query: 136 RNPHNRIKMTV--SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
R+ +R KM V + K A+T+YE + H +LI C L+TGRTHQ+RVH
Sbjct: 192 RSDRDRKKMAVLPDDSTRGKHAVTHYET----VRRLNHAALIECRLETGRTHQVRVHCAS 247
Query: 194 LGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
+GH ++GD +YG+ +SL F RQALHA +LG IHP + L + LP D+S+
Sbjct: 248 IGHALLGDPVYGRTPKPLRATLESLDFQRQALHAARLGFIHPISGESLDFCAELPPDMSE 307
Query: 248 LI 249
L+
Sbjct: 308 LM 309
>gi|284007738|emb|CBA73551.1| 23S rRNA pseudouridine synthase D [Arsenophonus nasoniae]
Length = 325
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 143/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED+EI+++NK LVVHP GN GT+ + LL YP +INVPRAGIVHRLDK+
Sbjct: 82 IPLNIVYEDDEILVINKPRDLVVHPGAGNPDGTVLNALLYRYPEIINVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMV+AK+I + HLV L+ + R+Y A+V G G ++ I R+P R M +
Sbjct: 142 TTGLMVIAKTIPAQTHLVEALQRREITREYEAVVNGRMTAGGTVDEPIARHPTKRTHMAI 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
KPA+T+Y + + H L R L++GRTHQIRVHM + H +VGD +YG
Sbjct: 202 HP--MGKPAITHYRVMEHF---RAHTRL-RLRLESGRTHQIRVHMAHINHPLVGDPVYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S+ FNRQALHA L L HP ++++W ++P D+ LI
Sbjct: 256 RPRPLKGVSEEFRQIMSNFNRQALHATMLRLYHPLTGIEMEWHADIPADMVILI 309
>gi|149907608|ref|ZP_01896355.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Moritella sp. PE36]
gi|149809278|gb|EDM69207.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Moritella sp. PE36]
Length = 326
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 146/240 (60%), Gaps = 17/240 (7%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80
+ E + + L I+YED++I+++NK AG VVHP GN GT+ + LL YP +I+VPRAGIV
Sbjct: 76 RYEPQDLPLVIVYEDDDILVINKPAGFVVHPGAGNPDGTVLNALLFHYPDIIDVPRAGIV 135
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHN 140
HRLDK+++GLMV+AK+I + HLV L+ + R+Y A+V G G ++ I R+
Sbjct: 136 HRLDKDTTGLMVIAKTIPAQTHLVTALQARRITREYEAVVSGTMTAGGFVDEPIGRHATK 195
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
R +M V KPA T+Y R+A + H SL+R L++GRTHQIRVHM + H IVG
Sbjct: 196 RTQMAVRP--LGKPAKTHY-RVAEKY--RAH-SLLRLRLESGRTHQIRVHMTHIMHPIVG 249
Query: 201 DNLYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D +Y + + +LI F RQALHA L L HP + WR P D++ LI
Sbjct: 250 DTVYAGRPKPPSNATDTLILALRGFGRQALHARMLKLEHPVTGEMMMWRAERPSDMNTLI 309
>gi|297183890|gb|ADI20012.1| pseudouridylate synthases, 23S RNA-specific [uncultured gamma
proteobacterium EB000_65A11]
Length = 318
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 148/258 (57%), Gaps = 19/258 (7%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
++G EL+ I+ + E + I L++ YED ++++NK +GLVVHP GN GTL +
Sbjct: 58 VTGGELVAIQ--SSAIETTYEAQAIPLNVAYEDEHLLVVNKPSGLVVHPGAGNFDGTLLN 115
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL L +PRAGIVHRLDK+++GL+VVAK++ + HLV QL+ V R Y A+V+G
Sbjct: 116 GLLHHAEQLNGIPRAGIVHRLDKDTTGLLVVAKTLTTQHHLVQQLQARSVSRIYDAVVYG 175
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
+G ++ I R+ R KM + KPA+T+Y ++ HI L L+TG
Sbjct: 176 SLTRSGKVDQPIGRHTTQRTKMAIRP--GGKPAITHY-KVVRNFGEHSHIELA---LETG 229
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKSL-----------IFNRQALHAYKLGLIHPKN 231
RTHQIRVHMQ + H ++GDN YG + + F R ALHA +L LIHP
Sbjct: 230 RTHQIRVHMQSISHPLIGDNTYGGGFKEPAHKDSGLLKALREFKRPALHARELKLIHPAT 289
Query: 232 NLKLKWRINLPDDISKLI 249
++ W +P D+ L+
Sbjct: 290 EEEMHWCAEIPVDMQTLL 307
>gi|251793936|ref|YP_003008668.1| 23S rRNA pseudouridine synthase D [Aggregatibacter aphrophilus
NJ8700]
gi|247535335|gb|ACS98581.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
aphrophilus NJ8700]
Length = 324
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 144/245 (58%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPKGTVLNALLYHYPQIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER + + +R L+TGRTHQIRVHM L H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHLAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMNVLRNFKRQALHAIMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
+LIT
Sbjct: 305 VELIT 309
>gi|334141362|ref|YP_004534568.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. PP1Y]
gi|333939392|emb|CCA92750.1| ribosomal large subunit pseudouridine synthase D [Novosphingobium
sp. PP1Y]
Length = 318
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 21/237 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE----IYPFLINVPRAGIVHR 82
I L++++ED +I+++K AGLVVHPA GNL GTL + LL + V R GIVHR
Sbjct: 84 IPLNVVFEDEYLIVIDKPAGLVVHPAAGNLDGTLVNALLHHCRGQLSGIGGVARPGIVHR 143
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
+DK++SGL+VVAK+ +++ L Q H ++R Y A+V G P + G + AI R+ NR
Sbjct: 144 IDKDTSGLLVVAKTDRAHEGLAAQFADHSIERAYKAIVGGHPLPITGTVTGAIGRSSSNR 203
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
KM + + K A+T+Y ERL ++ +L+ C L+TGRTHQ+RVHM +GH +
Sbjct: 204 KKMAIVEEGRGKHAVTHYRTIERL-------RNAALVECRLETGRTHQVRVHMSSIGHPL 256
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+GD +YG+ S + L F+RQALHA +LG IHP K+ + +P D++ LI
Sbjct: 257 LGDPVYGRTPSALRPILQRLQFSRQALHAAELGFIHPVKKEKVHFVSPVPADMAALI 313
>gi|444348231|ref|ZP_21155943.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443547517|gb|ELT56998.1| ribosomal large subunit pseudouridine synthase D [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 331
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 145/245 (59%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 81 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPPIAEVPRAGI 140
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 141 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKIIREYEAVACGIMTKGGTVDEPMARHPT 200
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER + + +R L+TGRTHQIRVHM + H
Sbjct: 201 KRTHMAVHP--MGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHIAH 251
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 252 PLLGDQTYGGRPRPPKNASEELMSVLRNFKRQALHAVMLRLQHPISGEMMEWYAPLPEDF 311
Query: 246 SKLIT 250
+LIT
Sbjct: 312 VELIT 316
>gi|326316273|ref|YP_004233945.1| RluA family pseudouridine synthase [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373109|gb|ADX45378.1| pseudouridine synthase, RluA family [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 339
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 143/249 (57%), Gaps = 16/249 (6%)
Query: 13 PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI 72
P+ F + + LD +YED + I+NK AGLVVHPA GN SGTL + LL + P
Sbjct: 99 PQSQAF----RPEAMALDTVYEDEHLRIVNKPAGLVVHPAPGNWSGTLLNGLLSLDPRAG 154
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM---VWGIPKLNGM 129
NVPRAGIVHRLDK++SGLMVVA+ LV + V R+YLA+ W + +
Sbjct: 155 NVPRAGIVHRLDKDTSGLMVVARERSVMDALVRMIAAREVSRQYLALGHRAWQGSQTR-V 213
Query: 130 INAAIMRNPHNRIKM-TVSKNFNA-KPALTYYERLATGIINKKHISLIRCNLKTGRTHQI 187
+ AI R+P NR++M V +A KPA T L T + L+ C L TGRTHQI
Sbjct: 214 VEEAIGRDPRNRLRMAAVDLAVHAGKPARTDLAVLDT----CEDGCLVHCTLHTGRTHQI 269
Query: 188 RVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
RVHM WL H ++ D LYG + + + +RQALHAY+L HP L + LP D++
Sbjct: 270 RVHMAWLRHPLLADTLYGGEPAAGM--SRQALHAYRLAFAHPVTGQPLLFHAPLPGDMAG 327
Query: 248 LITFSGIKW 256
+ G+++
Sbjct: 328 ALQAWGLRY 336
>gi|354582313|ref|ZP_09001215.1| pseudouridine synthase, RluA family [Paenibacillus lactis 154]
gi|353199712|gb|EHB65174.1| pseudouridine synthase, RluA family [Paenibacillus lactis 154]
Length = 322
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 149/232 (64%), Gaps = 17/232 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I LDI YED ++I++NK G+VVHPA G++SGTL + L+ L + R GIVHR+
Sbjct: 97 IPLDIAYEDRDVIVVNKPRGMVVHPAPGHVSGTLVNALMHHCKDLSGINGELRPGIVHRI 156
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GL++ AK+ K++ L QLK H V R+YLA+V G I G I+A I R+P +R
Sbjct: 157 DKDTTGLIMAAKNDKAHASLAAQLKEHSVNRRYLALVHGNISHDQGTIDAPIGRDPQDR- 215
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM + N+K A+T++ ER SL+ L+TGRTHQIRVHM+++GH +V
Sbjct: 216 KMYTVTDRNSKHAVTHFTVVERFGD-------YSLLELKLETGRTHQIRVHMKYIGHPLV 268
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
GD +YGK SK + N QALHA LG +HP + L++ +P+D+ +L+T
Sbjct: 269 GDPVYGK--SKGIKLNGQALHAAVLGFVHPASGQYLEFSAPMPEDMEELLTI 318
>gi|395234384|ref|ZP_10412608.1| 23S rRNA pseudouridine synthase D [Enterobacter sp. Ag1]
gi|394730830|gb|EJF30657.1| 23S rRNA pseudouridine synthase D [Enterobacter sp. Ag1]
Length = 326
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED +I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDEDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQLREITREYEAVAIGHMTGGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHISHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ + F+RQALHA L L HP + + ++W +P D+ +LI
Sbjct: 252 LYGGRPRPPKGASEEFVSVLRKFDRQALHATMLRLYHPISGILMEWSAPIPQDMVELI 309
>gi|302389579|ref|YP_003825400.1| ribosomal large subunit pseudouridine synthase D
[Thermosediminibacter oceani DSM 16646]
gi|302200207|gb|ADL07777.1| ribosomal large subunit pseudouridine synthase D
[Thermosediminibacter oceani DSM 16646]
Length = 307
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 152/231 (65%), Gaps = 10/231 (4%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGI 79
E + I LDII+ED +II++NK G+VV+PA GN SGTL + LL L IN V R GI
Sbjct: 75 EPENIPLDIIHEDRDIIVVNKPRGMVVYPAPGNYSGTLVNALLYHTKDLSGINGVMRPGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP 138
VHRLDK++SG++VVAK+ ++ L Q K +V++ YLA+VWG IP+ I A I R+P
Sbjct: 135 VHRLDKDTSGVIVVAKNDMAHRELAMQFKNKLVKKTYLAVVWGNIPEDRATIEAPIGRHP 194
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
R++M V+ N K A+T+++ L + + I N++TGRTHQIRVHM ++GH +
Sbjct: 195 AKRVEMAVTAK-NGKEAITHFKVLE----RFEDFTFIEVNIETGRTHQIRVHMSFIGHPV 249
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
VGD LY +K S I N QALHAY+LGL HP+ + + +P DI++++
Sbjct: 250 VGDPLYSRKKSPFNI-NGQALHAYRLGLNHPRTGEFMTFEAPIPQDITEIL 299
>gi|188534767|ref|YP_001908564.1| 23S rRNA pseudouridine synthase D [Erwinia tasmaniensis Et1/99]
gi|188029809|emb|CAO97690.1| Ribosomal large subunit pseudouridine synthase D [Erwinia
tasmaniensis Et1/99]
Length = 325
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL +P + +VPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYHFPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDALQRREITREYEAVAIGRMTAGGTVDQPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFITTLRAFDRQALHATMLRLYHPISGIEMEWHAPLPQDMVDLI 309
>gi|304399171|ref|ZP_07381038.1| pseudouridine synthase, RluA family [Pantoea sp. aB]
gi|440757485|ref|ZP_20936670.1| Ribosomal large subunit pseudouridine synthase D [Pantoea
agglomerans 299R]
gi|304353225|gb|EFM17605.1| pseudouridine synthase, RluA family [Pantoea sp. aB]
gi|436428731|gb|ELP26383.1| Ribosomal large subunit pseudouridine synthase D [Pantoea
agglomerans 299R]
Length = 325
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G EL+ I + + E + + LDI+YED +II++NK VVHP GN GT+ + L
Sbjct: 61 GGELVAIDAEIEE-AQRWEPQDLPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNAL 119
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP +++VPRAGIVHRLDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G
Sbjct: 120 LHHYPAIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVDSLQRREITREYEAVAIGNM 179
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G + I R+ R M V + KPA+T+Y R+ + H L R L+TGRT
Sbjct: 180 TAGGTVEQPISRHSTKRTHMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRT 233
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM + H +VGD LYG K S++ I F+RQALHA L L HP + +
Sbjct: 234 HQIRVHMSHISHPLVGDPLYGGRPRPPKGASEAFITTLRGFDRQALHATMLRLYHPISGI 293
Query: 234 KLKWRINLPDDISKLI 249
++++ LP D+ LI
Sbjct: 294 EMEFHAALPQDMVDLI 309
>gi|404253882|ref|ZP_10957850.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
PAMC 26621]
Length = 315
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 152/257 (59%), Gaps = 27/257 (10%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
Y +I+ P E + I L +++ED +I+++K AGLVVHPA GNL GTL + LL
Sbjct: 66 YRIIVPDPTPAH----NEAQDIALTVVFEDEHLIVIDKQAGLVVHPAAGNLDGTLVNALL 121
Query: 66 E----IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ V R GIVHR+DK++SGLMV AK+ ++++ L Q H + R+Y A+V
Sbjct: 122 HHCGGSLSGIGGVARPGIVHRIDKDTSGLMVAAKTDRAHVGLAKQFAAHSIDRRYKAIVS 181
Query: 122 GIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
G P G ++A + R+P NR K+ + + K A+T++ ERL + +L+ C
Sbjct: 182 GRPAPPAGSVDAPLARSPQNRKKIAIVQ--GGKRAVTHFSTIERL-------REAALVEC 232
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLIFNRQALHAYKLGLIHPKN 231
L+TGRTHQ+RVHM LGH ++GD +YG K+ ++L F+RQALHA +LG IHP
Sbjct: 233 RLETGRTHQVRVHMASLGHPLLGDPVYGRTKQAHKRDLETLGFHRQALHAARLGFIHPIK 292
Query: 232 NLKLKWRINLPDDISKL 248
L + +P D+ +L
Sbjct: 293 CNVLAFDSEMPADMQEL 309
>gi|270264067|ref|ZP_06192335.1| ribosomal large subunit pseudouridine synthase D [Serratia
odorifera 4Rx13]
gi|333925691|ref|YP_004499270.1| RluA family pseudouridine synthase [Serratia sp. AS12]
gi|333930644|ref|YP_004504222.1| RluA family pseudouridine synthase [Serratia plymuthica AS9]
gi|386327515|ref|YP_006023685.1| RluA family pseudouridine synthase [Serratia sp. AS13]
gi|421781774|ref|ZP_16218238.1| pseudouridine synthase [Serratia plymuthica A30]
gi|270042260|gb|EFA15356.1| ribosomal large subunit pseudouridine synthase D [Serratia
odorifera 4Rx13]
gi|333472251|gb|AEF43961.1| pseudouridine synthase, RluA family [Serratia plymuthica AS9]
gi|333489751|gb|AEF48913.1| pseudouridine synthase, RluA family [Serratia sp. AS12]
gi|333959848|gb|AEG26621.1| pseudouridine synthase, RluA family [Serratia sp. AS13]
gi|407756107|gb|EKF66226.1| pseudouridine synthase [Serratia plymuthica A30]
Length = 325
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIALNIVYEDSDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGTMTAGGTVEEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIATLRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLI 309
>gi|378765992|ref|YP_005194453.1| ribosomal large subunit pseudouridine synthase D [Pantoea ananatis
LMG 5342]
gi|365185466|emb|CCF08416.1| ribosomal large subunit pseudouridine synthase D [Pantoea ananatis
LMG 5342]
Length = 326
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQNIPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNALLHHYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDTLQRREITREYEAVAIGTMTAGGTVDEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ I F+RQALHA L L HP + +++++ +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEDFITTLRGFDRQALHATMLRLYHPISGIEMEFHAAIPQDMIDLI 309
>gi|58697309|ref|ZP_00372669.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia endosymbiont of Drosophila simulans]
gi|225630832|ref|YP_002727623.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia sp. wRi]
gi|58536323|gb|EAL59813.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia endosymbiont of Drosophila simulans]
gi|225592813|gb|ACN95832.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia sp. wRi]
Length = 276
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 157/264 (59%), Gaps = 32/264 (12%)
Query: 10 IIKPKKNFFLNKTEKKV---------IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
I+KP + + ++ + + IKLDI+YED +II+L+K +GL VHP G + TL
Sbjct: 14 IVKPGEEYIVHLVQPDISTSIEPNYDIKLDIVYEDEDIIVLSKQSGLTVHPGAGTNNDTL 73
Query: 61 FDNLLEIYPFLINVP----RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116
+ ++ L +P R GIVHRLDK++SGLMV+AK+ +++ L L ++R+Y
Sbjct: 74 LNAVI---AHLGKIPYSHVRPGIVHRLDKDTSGLMVIAKNEEAHGFLSELLSNRKIKREY 130
Query: 117 LAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
LA+VWGI G I I N+ M V+K K A+T+Y L +I + +SL+
Sbjct: 131 LAIVWGILSSQQGTIKTNIAPKRGNKEMMCVTK-ITGKLAITHY--LVQKVIGQ--VSLV 185
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI----------FNRQALHAYKLG 225
+C L+TGRTHQIRVHM +GH IVGD +YGK SKS FNRQALHAY LG
Sbjct: 186 KCTLETGRTHQIRVHMSHIGHSIVGDQVYGKNSSKSTKYAKNSSFIRNFNRQALHAYTLG 245
Query: 226 LIHPKNNLKLKWRINLPDDISKLI 249
L HPK+ +++ +LP DI LI
Sbjct: 246 LYHPKSKGYMEFVSDLPQDIKTLI 269
>gi|297171550|gb|ADI22548.1| pseudouridylate synthases, 23S RNA-specific [uncultured
Oceanospirillales bacterium HF0500_09M11]
Length = 519
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 152/239 (63%), Gaps = 18/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I+L +IY+D ++I++NK AGLVVHPA G+ GTL + LL + L ++PRAGIVHR
Sbjct: 277 QPEAIELPVIYQDQDLIVINKPAGLVVHPAAGHADGTLLNGLLHLDDRLSSLPRAGIVHR 336
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD++++GLMVVA+S++++ LV QL+ + R+Y A+ G+ G ++A + R+P +R
Sbjct: 337 LDRDTTGLMVVARSVEAHTGLVAQLQDKSLYREYQAIAMGVMTGGGTVDAPMGRHPVDRK 396
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+ V + KPA+T+Y ++++ + + ++ L+TGRTHQIRVH+ + +VGD
Sbjct: 397 RQAVVTH-GGKPAVTHYR-----VLDRYRAHTRVQVRLETGRTHQIRVHLAHRRYPLVGD 450
Query: 202 NLYGKKYSKSL-----------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG + + F RQALHA+KLGL+HP + +++ LP+D L+
Sbjct: 451 PLYGGRLKQPAGATEALREALRGFRRQALHAFKLGLVHPASGEYMEFEAPLPEDFQTLV 509
>gi|58698738|ref|ZP_00373623.1| ribosomal large subunit pseudouridine synthase D [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58534736|gb|EAL58850.1| ribosomal large subunit pseudouridine synthase D [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 282
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 157/264 (59%), Gaps = 32/264 (12%)
Query: 10 IIKPKKNFFLNKTEKKV---------IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
I+KP + + ++ + + IKLDI+YED +II+L+K +GL VHP G + TL
Sbjct: 20 IVKPGEEYIVHLVQPDISTSIEPNYDIKLDIVYEDEDIIVLSKQSGLTVHPGAGTNNDTL 79
Query: 61 FDNLLEIYPFLINVP----RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116
+ ++ L +P R GIVHRLDK++SGLMV+AK+ +++ L L ++R+Y
Sbjct: 80 LNAVI---AHLGKIPYSHVRPGIVHRLDKDTSGLMVIAKNEEAHGFLSELLSNRKIKREY 136
Query: 117 LAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
LA+VWGI G I I N+ M V+K K A+T+Y L +I + +SL+
Sbjct: 137 LAIVWGILSSQQGTIKTNIAPKRGNKEMMCVTK-ITGKLAITHY--LVQKVIGQ--VSLV 191
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI----------FNRQALHAYKLG 225
+C L+TGRTHQIRVHM +GH IVGD +YGK SKS FNRQALHAY LG
Sbjct: 192 KCTLETGRTHQIRVHMSHIGHSIVGDQVYGKNSSKSTKYAKNSSFIRNFNRQALHAYTLG 251
Query: 226 LIHPKNNLKLKWRINLPDDISKLI 249
L HPK+ +++ +LP DI LI
Sbjct: 252 LYHPKSKGYMEFVSDLPQDIKTLI 275
>gi|320539057|ref|ZP_08038731.1| putative 23S rRNA pseudouridine synthase [Serratia symbiotica str.
Tucson]
gi|320030897|gb|EFW12902.1| putative 23S rRNA pseudouridine synthase [Serratia symbiotica str.
Tucson]
Length = 325
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 142/239 (59%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LD++YED +I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIALDVVYEDCDILVINKPRDRVVHPGAGNPDGTVLNALLHYYPKIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQEREITREYEAVAIGTMTAGGTVDEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y L + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVYP--MGKPAVTHYRILEH---FRAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S++ I F+RQALHA L L HP + ++++W LP D+ LIT
Sbjct: 252 LYGGRPRSPKGASEAFISTLRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLIT 310
>gi|291618565|ref|YP_003521307.1| RluD [Pantoea ananatis LMG 20103]
gi|386016868|ref|YP_005935164.1| ribosomal large subunit pseudouridine synthase D RluD [Pantoea
ananatis AJ13355]
gi|386078249|ref|YP_005991774.1| ribosomal large subunit pseudouridine synthase D RluD [Pantoea
ananatis PA13]
gi|291153595|gb|ADD78179.1| RluD [Pantoea ananatis LMG 20103]
gi|327394946|dbj|BAK12368.1| ribosomal large subunit pseudouridine synthase D RluD [Pantoea
ananatis AJ13355]
gi|354987430|gb|AER31554.1| ribosomal large subunit pseudouridine synthase D RluD [Pantoea
ananatis PA13]
Length = 326
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 145/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQNIPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNALLHHYPAIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVDALQRREITREYEAVAIGTMTAGGTVDEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S+ I F+RQALHA L L HP + +++++ +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEDFITTLRGFDRQALHATMLRLYHPISGIEMEFHAAIPQDMIDLI 309
>gi|373450219|ref|ZP_09542244.1| Pseudouridine synthase [Wolbachia pipientis wAlbB]
gi|371932579|emb|CCE77241.1| Pseudouridine synthase [Wolbachia pipientis wAlbB]
Length = 317
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 148/238 (62%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP----RAGIVHR 82
IKLDIIYED +II+L+K +GL VHP G + TL + ++ L +P R+GIVHR
Sbjct: 81 IKLDIIYEDEDIIVLSKQSGLTVHPGAGTNNDTLLNAVI---AHLGKIPYINTRSGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNR 141
LDK++SGLMV+AK+ +S+ L L ++R+YLA++WG +P L G + I N+
Sbjct: 138 LDKDTSGLMVIAKNEQSHSFLSELLSNRKIKREYLAVIWGALPNLQGTVKTHIAPKRSNK 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V+K K A+T+Y II + SL++C L+TGRTHQIRVHM +GH +VGD
Sbjct: 198 EMMCVTKTA-GKLAITHYS--VKKIIGQA--SLVKCTLETGRTHQIRVHMSHIGHSVVGD 252
Query: 202 NLYGKKYSKSLI----------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YGK SKS FNRQALHA+ LGL HPK+ +++ +LP D+ LI
Sbjct: 253 QVYGKNSSKSAKHAKNSDFIRNFNRQALHAHTLGLYHPKSKEYMEFVSDLPQDMQVLI 310
>gi|416894445|ref|ZP_11925033.1| RluA protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347813407|gb|EGY30080.1| RluA protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 324
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 143/245 (58%), Gaps = 23/245 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENIPLNIVYEDDDILVINKPKDLVVHPGAGNPKGTVLNALLYHYPQIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVACGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER + + +R L+TGRTHQIRVHM L H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RDYTRLRLRLETGRTHQIRVHMAHLAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP + ++W LP+D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMNVLRNFKRQALHAIMLRLQHPISGEMMEWYAPLPEDF 304
Query: 246 SKLIT 250
LIT
Sbjct: 305 VALIT 309
>gi|352105801|ref|ZP_08960965.1| pseudouridine synthase [Halomonas sp. HAL1]
gi|350598224|gb|EHA14347.1| pseudouridine synthase [Halomonas sp. HAL1]
Length = 319
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 143/228 (62%), Gaps = 17/228 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED+ +I++NK+AG+VVHPA GN GTL + LL +P L VPRAGIVHR
Sbjct: 77 EAQDIALDIVYEDDAVIVINKAAGMVVHPAAGNPDGTLLNALLYHHPALAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLM+VAK++ + LV+QL+ V R+Y A+V G P I+A I R+P +R
Sbjct: 137 LDKDTTGLMMVAKTLPAQTVLVDQLQARSVSRQYDAVVIGKPVSGSTIDAPIGRHPKDRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+ V+ KPA+T++ R+ H +RC L+TGRTHQIRVHM + ++GD
Sbjct: 197 RQAVTT--AGKPAITHF-RVVERFRAHTH---VRCKLETGRTHQIRVHMAHARYPLIGDP 250
Query: 203 LYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWRI 239
+YG + K ++ F RQALHA KL HP + + +++
Sbjct: 251 MYGGRAKLPPGAAEPLKEILREFPRQALHARKLIFKHPVSGETVTFQV 298
>gi|119470041|ref|ZP_01612846.1| 23S rRNA pseudouridine synthase [Alteromonadales bacterium TW-7]
gi|392537036|ref|ZP_10284173.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas marina mano4]
gi|119446751|gb|EAW28024.1| 23S rRNA pseudouridine synthase [Alteromonadales bacterium TW-7]
Length = 325
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 147/254 (57%), Gaps = 24/254 (9%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E I P++ N I L+I+YED+ I+++NK GLVVHP GN GT+ + LL
Sbjct: 68 ETTIEAPREYLAQN------IDLNIVYEDDHILVINKPMGLVVHPGAGNPDGTVLNALLH 121
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPK 125
YP +INVPRAGIVHRLDK+++GLMVVAK+I++ HLV L K R+Y A+ G
Sbjct: 122 HYPDIINVPRAGIVHRLDKDTTGLMVVAKTIQAQTHLVKALQKRENFTREYEALCNGTMT 181
Query: 126 LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
GM+ I R+ R M V + KPA+T+Y R+A + H L R L+TGRTH
Sbjct: 182 AGGMVEKPIGRHATQRTHMAVHE--MGKPAITHY-RVAEKF--RAHTRL-RLRLETGRTH 235
Query: 186 QIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLK 234
QIRVHM +L H ++GD Y K + L F RQALHA KL + HP
Sbjct: 236 QIRVHMAYLNHPLIGDQSYNGRPRPPKGATPQLFELLRSFKRQALHAVKLSIAHPITGEM 295
Query: 235 LKWRINLPDDISKL 248
+ W+ +PDD+ ++
Sbjct: 296 MTWQAPIPDDMVEM 309
>gi|359396326|ref|ZP_09189378.1| Ribosomal large subunit pseudouridine synthase D [Halomonas
boliviensis LC1]
gi|357970591|gb|EHJ93038.1| Ribosomal large subunit pseudouridine synthase D [Halomonas
boliviensis LC1]
Length = 309
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 141/227 (62%), Gaps = 17/227 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED+ +I++NK+AG+VVHPA GN GTL + LL +P L VPRAGIVHR
Sbjct: 67 EAQDIALDIVYEDDTVIVINKAAGMVVHPAAGNPDGTLLNALLHHHPALAEVPRAGIVHR 126
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLM+VAK++ + LV QL+ V R+Y A+V G P I+A I R+P +R
Sbjct: 127 LDKDTTGLMMVAKTLPAQTALVEQLQARSVSRQYDAVVIGKPVSGSTIDAPIGRHPKDRK 186
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+ V+ KPA+T++ R+ H +RC L+TGRTHQIRVHM + ++GD
Sbjct: 187 RQAVTT--AGKPAITHF-RVVERFRAHTH---VRCKLETGRTHQIRVHMAHVRLPLIGDP 240
Query: 203 LYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWR 238
+YG + K ++ F RQALHA KL HP + L ++
Sbjct: 241 MYGGRAKLPPGAAEPLKEILREFPRQALHARKLIFKHPVSGETLTFQ 287
>gi|372275032|ref|ZP_09511068.1| 23S rRNA pseudouridine synthase D [Pantoea sp. SL1_M5]
gi|390437344|ref|ZP_10225882.1| 23S rRNA pseudouridine synthase D [Pantoea agglomerans IG1]
Length = 325
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G EL+ I + + E + + LDI+YED +II++NK VVHP GN GT+ + L
Sbjct: 61 GGELVAIDAEIEE-AQRWEPQNLPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNAL 119
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP +++VPRAGIVHRLDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G
Sbjct: 120 LHHYPAIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVDSLQRREITREYEAVAIGNM 179
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G + I R+ R M V + KPA+T+Y R+ + H L R L+TGRT
Sbjct: 180 TAGGTVEQPISRHSTKRTHMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRT 233
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM + H +VGD LYG K S++ I F+RQALHA L L HP + +
Sbjct: 234 HQIRVHMSHISHPLVGDPLYGGRPRPPKGASEAFITTLRGFDRQALHATMLRLYHPISGI 293
Query: 234 KLKWRINLPDDISKLI 249
++++ LP D+ LI
Sbjct: 294 EMEFHAALPQDMVDLI 309
>gi|403386611|ref|ZP_10928668.1| RluA family pseudouridine synthase [Clostridium sp. JC122]
Length = 306
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 150/232 (64%), Gaps = 13/232 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGI 79
E + I LDI+YED+++II+NK+ +VVHPA GN +GTL + LL L IN V R GI
Sbjct: 74 EAEDISLDIVYEDSDVIIVNKAKDMVVHPAPGNYNGTLVNALLYHCKDLSGINGVARPGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNP 138
VHR+DK++SG++V+AK+ ++ L Q K H + R Y A+V G+ K + G+I+A I R+P
Sbjct: 134 VHRIDKDTSGILVIAKNDNAHNRLAEQFKDHSITRTYYALVEGVIKTDSGVIDAPIGRHP 193
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHG 197
RIKM V KN K A+T+YE +I + K +L++CNL+TGRTHQIRVHM +GH
Sbjct: 194 VERIKMAVVKN--GKHAVTHYE-----VIERFKGYTLVKCNLETGRTHQIRVHMSHIGHP 246
Query: 198 IVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG K K QALHA LG IHP +++ LP KL+
Sbjct: 247 LLGDEVYGFKKQK-FKLQGQALHAKDLGFIHPTKGEYVEFSSQLPQYFEKLL 297
>gi|448747289|ref|ZP_21728950.1| Pseudouridine synthase, RluC/RluD [Halomonas titanicae BH1]
gi|445565201|gb|ELY21313.1| Pseudouridine synthase, RluC/RluD [Halomonas titanicae BH1]
Length = 319
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 141/227 (62%), Gaps = 17/227 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED+ ++++NK+AG+VVHPA GN GTL + LL P L VPRAGIVHR
Sbjct: 77 EAQDIALDIVYEDDTVMVINKAAGMVVHPAAGNPDGTLLNALLHHQPSLAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLM+VAK++ + LV QL+ V R+Y A+V G P I+A I R+P +R
Sbjct: 137 LDKDTTGLMMVAKTLPAQTALVEQLQARSVSRQYDAVVIGKPVSGSTIDAPIGRHPKDRK 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+ V+ + KPA+T++ R+ H +RC L+TGRTHQIRVHM + ++GD
Sbjct: 197 RQAVTA--SGKPAITHF-RVVERFRAHTH---VRCKLETGRTHQIRVHMAHARYPLIGDP 250
Query: 203 LYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWR 238
+YG + K ++ F RQALHA KL HP + L ++
Sbjct: 251 MYGGRAKLPPGAAEPLKEILREFPRQALHARKLIFKHPVSGETLTFQ 297
>gi|27262446|gb|AAN87504.1| Ribosomal large subunit pseudouridine synthase D [Heliobacillus
mobilis]
Length = 327
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 146/227 (64%), Gaps = 9/227 (3%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I +DI+Y+D + ++NKSAGLVVHPA G+ SGTL + LL L + R GIVHR+
Sbjct: 99 IPIDIVYQDAHVAVINKSAGLVVHPAEGHTSGTLVNALLYHIKDLSGINGELRPGIVHRI 158
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL+VVAK +++IHL Q+K H+V+R+YLA+V G I G I+A I R+P +R
Sbjct: 159 DKDTSGLLVVAKHDEAHIHLAEQVKDHLVRREYLAIVHGIIGAETGRIDAPIGRDPKDRQ 218
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V + K ++T+ L + SL+RCNL+TGRTHQIRVHM ++GH + GD
Sbjct: 219 KMAVVS--SGKASVTHLRVLER--FPESGFSLVRCNLETGRTHQIRVHMAYIGHPVAGDP 274
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K + + QALHA++L HP + ++ ++ P+ K++
Sbjct: 275 KYGPKKA-AFGLEGQALHAHRLDFTHPHDGREMTFQAEPPETFQKVL 320
>gi|153948512|ref|YP_001402171.1| 23S rRNA pseudouridine synthase D [Yersinia pseudotuberculosis IP
31758]
gi|152960007|gb|ABS47468.1| ribosomal large subunit pseudouridine synthase D [Yersinia
pseudotuberculosis IP 31758]
Length = 327
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 142/234 (60%), Gaps = 15/234 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y + +R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHYRIMEH--FRAHTRLRLRLRLETGRTHQIRVHMSHINHPLVGDQLYGG 257
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S S I F+RQALHA L L HP + ++++W LP+D+ +LI
Sbjct: 258 RPRPPKGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELI 311
>gi|308187865|ref|YP_003931996.1| ribosomal large subunit pseudouridine synthase D [Pantoea vagans
C9-1]
gi|308058375|gb|ADO10547.1| ribosomal large subunit pseudouridine synthase D [Pantoea vagans
C9-1]
Length = 325
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G EL+ I + + E + + LDI+YED +II++NK VVHP GN GT+ + L
Sbjct: 61 GGELVAIDAEIEE-AQRWEPQNLPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNAL 119
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP +++VPRAGIVHRLDK+++GLMVVAK++ + HLV+ L+ + R+Y A+ G
Sbjct: 120 LHHYPAIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVDSLQRREITREYEAVAIGNM 179
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G + I R+ R M V + KPA+T+Y R+ + H L R L+TGRT
Sbjct: 180 TAGGTVEQPISRHSTKRTHMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRT 233
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM + H +VGD LYG K S++ I F+RQALHA L L HP + +
Sbjct: 234 HQIRVHMSHISHPLVGDPLYGGRPRPPKGASEAFITTLRGFDRQALHATMLRLYHPISGI 293
Query: 234 KLKWRINLPDDISKLI 249
++++ LP D+ LI
Sbjct: 294 EMEFHAALPQDMVDLI 309
>gi|146328697|ref|YP_001210177.1| ribosomal large subunit pseudouridine synthase, RluD [Dichelobacter
nodosus VCS1703A]
gi|146232167|gb|ABQ13145.1| ribosomal large subunit pseudouridine synthase, RluD [Dichelobacter
nodosus VCS1703A]
Length = 322
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 152/246 (61%), Gaps = 25/246 (10%)
Query: 21 KTEKKV--IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78
+TE + L+I+Y D++II++NK AGLVVHPA+GN TL + LL +P ++PR+G
Sbjct: 76 QTEDSAQNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKHLPRSG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHRLDK++SG MV+A S +++ LV QL+ + R YLA+V+G I+ I R+
Sbjct: 136 IVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTIDLPIGRHA 195
Query: 139 HNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
+R+KM V + KPA+T+Y ER T ++L+R L+TGRTHQIRVH+
Sbjct: 196 KDRLKMAVRP--DGKPAITHYRIEERWQT-------LTLLRVQLETGRTHQIRVHLSHHR 246
Query: 196 HGIVGDNLYGKK--YSKSLI---------FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
H +VGD LYG + + SL F RQALHA +L L HP N +++ LPDD
Sbjct: 247 HPLVGDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDD 306
Query: 245 ISKLIT 250
+++L T
Sbjct: 307 MTQLFT 312
>gi|395493555|ref|ZP_10425134.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
PAMC 26617]
Length = 315
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 151/257 (58%), Gaps = 27/257 (10%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
Y +I+ P E + I L +++ED +I+++K AGLVVHPA GNL GTL + LL
Sbjct: 66 YRIIVPDPTPAH----NEAQDIALTVVFEDEHLIVIDKQAGLVVHPAAGNLDGTLVNALL 121
Query: 66 E----IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ V R GIVHR+DK++SGLMV AK+ ++++ L Q H + R+Y A+V
Sbjct: 122 HHCGGSLSGIGGVARPGIVHRIDKDTSGLMVAAKTDRAHVGLAKQFAAHSIDRRYKAIVS 181
Query: 122 GIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
G P G ++A + R+P NR K+ + + K A+T++ ERL + +L+ C
Sbjct: 182 GRPAPPAGSVDAPLARSPQNRKKIAIVQ--GGKRAVTHFSTIERL-------REAALVEC 232
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKN 231
L+TGRTHQ+RVHM LGH ++GD +YG+ ++L F+RQALHA +LG IHP
Sbjct: 233 RLETGRTHQVRVHMASLGHPLLGDPVYGRTKQAHRRDLETLGFHRQALHAARLGFIHPIK 292
Query: 232 NLKLKWRINLPDDISKL 248
L + +P D+ +L
Sbjct: 293 CNVLAFDSEMPADMQEL 309
>gi|348028565|ref|YP_004871251.1| ribosomal large subunit pseudouridine synthase D [Glaciecola
nitratireducens FR1064]
gi|347945908|gb|AEP29258.1| ribosomal large subunit pseudouridine synthase D [Glaciecola
nitratireducens FR1064]
Length = 326
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 154/257 (59%), Gaps = 19/257 (7%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
SG E++I ++ +E + I L+++YED I++++K AGLVVHP GN GTL +
Sbjct: 64 SGEEIVIDAEQE--VQVTSEAQHIDLNVVYEDEHILVIDKQAGLVVHPGAGNHDGTLLNA 121
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
LL P + VPRAGIVHRLDK+++GLMVVAK++ + LV QL+ + R+Y A+V G
Sbjct: 122 LLAKVPEIDQVPRAGIVHRLDKDTTGLMVVAKTLPAQTSLVEQLQARSMGREYEALVMGT 181
Query: 124 PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
G+I+ I R+ R M V + F KPA+T+Y R+ H +R L++GR
Sbjct: 182 MIAGGVIDEPIGRHATKRTAMAV-REF-GKPAVTHY-RVKEKFRAYTH---LRLKLESGR 235
Query: 184 THQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNN 232
THQIRVHM + H +VGD LYG K S+ I F RQALHA +L L+HP +
Sbjct: 236 THQIRVHMSHINHPLVGDALYGGRPRLPKNASEHFINALRAFKRQALHAAQLTLMHPVSG 295
Query: 233 LKLKWRINLPDDISKLI 249
++ ++ LP+D L+
Sbjct: 296 EEMTFKAPLPEDFVTLL 312
>gi|169343529|ref|ZP_02864528.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
gi|169298089|gb|EDS80179.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
Length = 306
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 10/233 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRA 77
K E + I L+I+YED ++I++NK G+VVHPA GN +GTL + LL L IN V R
Sbjct: 74 KVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHCDDLSGINGVIRP 133
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR 136
GIVHR+DK++SG++VVAK+ ++ L Q K H ++R+Y A+V G K G I+A + R
Sbjct: 134 GIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR 193
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ +R+K V K+ K A+T+YE L + N SL++CNL+TGRTHQIRVHM ++GH
Sbjct: 194 HHRDRLKYAVVKD--GKRAVTHYEVLK--VFNS--CSLVKCNLETGRTHQIRVHMAFIGH 247
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG K K L Q LHA LG IHP +++ LP+ K++
Sbjct: 248 PLLGDTVYGLKKQKKLSQEGQVLHAKTLGFIHPTTGEYVEFDSELPEYFEKIV 300
>gi|398818376|ref|ZP_10576968.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
gi|398028144|gb|EJL21668.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
Length = 309
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 155/246 (63%), Gaps = 20/246 (8%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
+ P K + E + LDI+YED++++++NK GLVVHPA G+ SGTL + LL
Sbjct: 71 VPPPKEMAIQPEE---MSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHCKD 127
Query: 71 L--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL 126
L IN V R GIVHR+DK++SGL++VAK+ K+++ L QLK H V RKY+A+V G IP
Sbjct: 128 LSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAHMGLAEQLKAHTVNRKYVAIVHGVIPHE 187
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGR 183
G I A I R+P NR +M V N+KPA+T++ ER K +L+ L+TGR
Sbjct: 188 MGTIEAPIGRDPKNRQQMAVVFE-NSKPAVTHFIVLERF-------KEYTLVELKLETGR 239
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
THQIRVHM+++G+ + GD YG K + L + QALHA LG HP+ +L++ +P
Sbjct: 240 THQIRVHMKYIGYPLAGDPKYGPKNTVEL--DGQALHAKTLGFSHPRTGEQLEFEAPMPK 297
Query: 244 DISKLI 249
++ +I
Sbjct: 298 EMLDVI 303
>gi|449473898|ref|XP_004154015.1| PREDICTED: ribosomal large subunit pseudouridine synthase D-like
[Cucumis sativus]
Length = 323
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 142/235 (60%), Gaps = 14/235 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK VVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDDDILVINKPRDFVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L++ + R+Y A+ G G + I R+P R
Sbjct: 138 LDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTSGGTVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + I+ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRIHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYGKKY---SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG S I F+RQALHA L L HP ++++W +P D+ +LI
Sbjct: 252 VYGGGGGGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWHAPIPQDMVELI 306
>gi|381153081|ref|ZP_09864950.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
gi|380885053|gb|EIC30930.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
Length = 341
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 148/235 (62%), Gaps = 19/235 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED ++++NK AGLVVHPA GN GTL + LL P L +PRAGIVHR+DK
Sbjct: 105 IPLDIVYEDESLLVVNKPAGLVVHPAAGNWDGTLLNALLHHDPHLETLPRAGIVHRIDKE 164
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+++AK+++++ L QL+ + R+YLA+ G G ++ I R+P +R + V
Sbjct: 165 TSGLLMIAKTLQAHNSLTQQLQEREITREYLAITRGRMTAGGTVDEPIGRHPTDRKRYAV 224
Query: 147 SKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
+ K A+T+Y ++N+ H + I+ L+TGRTHQIRVHM + + ++GD +YG
Sbjct: 225 RE--AGKHAVTHYR-----VLNRFAHHTFIQVMLETGRTHQIRVHMAHIRYPLLGDPVYG 277
Query: 206 KKY-----------SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++ ++ F RQALHA KLGL+HP + L+W LP+D++ L+
Sbjct: 278 GRFQMPPDCGERLEAELRNFKRQALHAAKLGLLHPVTDEYLEWEHPLPEDMAHLL 332
>gi|251778563|ref|ZP_04821483.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243082878|gb|EES48768.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 302
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 158/250 (63%), Gaps = 18/250 (7%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
E++I P+ K E + I LDI+YED ++I++NK G+VVHPA GN +GTL + LL
Sbjct: 60 EIVITMPEVETL--KVESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTLVNALLF 117
Query: 67 IYPFLIN---VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
L + V R GIVHR+DK++SG++V+AK+ +S+ L QLK H + R+Y A+V G
Sbjct: 118 HCTDLSSINGVIRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKDHSMNREYYALVEGR 177
Query: 124 PKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNL 179
K + G+I+ + R+ NR+K+ +++ + + A+T+Y ER TG +LI+C L
Sbjct: 178 FKNDSGVIDKPLGRDKKNRLKIAITE--DGRRAITHYEVLERYDTG------CTLIKCKL 229
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRI 239
+TGRTHQIRVHM LGH +VGD LYG K + Q LHA KLG IHP N +++
Sbjct: 230 ETGRTHQIRVHMASLGHPLVGDPLYGFKKQR-FKLKGQMLHAKKLGFIHPTKNEYMEFET 288
Query: 240 NLPDDISKLI 249
NLP+ ++I
Sbjct: 289 NLPEYFEEII 298
>gi|190575601|ref|YP_001973446.1| ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
maltophilia K279a]
gi|424669915|ref|ZP_18106940.1| ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
maltophilia Ab55555]
gi|190013523|emb|CAQ47158.1| putative ribosomal large subunit pseudouridine synthase D
[Stenotrophomonas maltophilia K279a]
gi|401071070|gb|EJP79582.1| ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
maltophilia Ab55555]
gi|456734579|gb|EMF59349.1| Ribosomal large subunit pseudouridine synthase D [Stenotrophomonas
maltophilia EPM1]
Length = 329
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 145/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I LD+++ED ++++NK GLVVHP GN SGTL + LL P + +PRAGI
Sbjct: 77 TDAQPEDIPLDVLFEDEHLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SG+MVVAK++++ LV QL V R+YLA+V G G +A I R+P
Sbjct: 137 VHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPR 196
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R+KM V + + K A+T+Y ER + H +L C L+TGRTHQIRVHM + H
Sbjct: 197 DRLKMAVRE--DGKEAITHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHVRH 247
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
I+GD LYG K S L+ F RQALHA L HP ++ +P+D+
Sbjct: 248 PIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFTHPITGELVRNTAPVPEDM 307
Query: 246 SKLI 249
L+
Sbjct: 308 LHLM 311
>gi|410614266|ref|ZP_11325315.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
psychrophila 170]
gi|410166188|dbj|GAC39204.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
psychrophila 170]
Length = 327
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 153/256 (59%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + + + + + I L+I+YED I+++NK LVVHP GN GT+ + L
Sbjct: 64 GEELIEIDAQIEMQV-QHKGQDIDLNIVYEDEHILVINKPMNLVVHPGAGNSDGTVLNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + NVPRAGIVHRLDK+++GLMVVAK+I + HLV QL+ + R+Y A+V G
Sbjct: 123 LNHAPEIANVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEQLQAREISREYEAVVVGTM 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPA+T+Y R+ + H + IR L++GRT
Sbjct: 183 VAGGTVDEPIGRHPTKRTSMAVRE--SGKPAMTHY-RVKEKF--RAH-TYIRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L + +VGD YG K +++++ F RQALHA +L L HP
Sbjct: 237 HQIRVHMSHLRYPLVGDQAYGGRPRPPKACNENMVNMLRMFRRQALHAIQLELTHPVTGE 296
Query: 234 KLKWRINLPDDISKLI 249
L W+ LP+D L+
Sbjct: 297 WLSWQAPLPEDFVALL 312
>gi|429765557|ref|ZP_19297842.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429186008|gb|EKY26971.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 315
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 15/242 (6%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
++I +K K+ LN +K + LDI+YED+++II+NKS G+VVHPA GN +GTL + +L
Sbjct: 71 DVITVKLKEPEELNVLPEK-MDLDIVYEDSDVIIINKSKGVVVHPAPGNYTGTLVNGILH 129
Query: 67 IYPFL--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L IN V R GIVHR+DK++SG++V+AK+ ++ L Q K H ++R+Y A+V G
Sbjct: 130 HCTDLSGINGVIRPGIVHRIDKDTSGILVIAKNDDAHNSLAVQFKDHSIKREYYALVEGR 189
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
L G ++ I R+ +RIKM + N + K A+T+YE L K +SLI+C L+TG
Sbjct: 190 FSTLEGTVDKPISRDKKDRIKMAI--NSDGKRAVTHYEVLEQ---YDKGVSLIKCTLETG 244
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFN--RQALHAYKLGLIHPKNNLKLKWRIN 240
RTHQIRVHM +GH +VGD +YG K K FN QALHA LG IHP+ +++
Sbjct: 245 RTHQIRVHMASIGHPLVGDLVYGYKRQK---FNIEGQALHAKTLGFIHPRTKEYMEFTSE 301
Query: 241 LP 242
LP
Sbjct: 302 LP 303
>gi|32423742|gb|AAP81266.1| pseudouridine synthase [Pseudomonas aeruginosa PA14]
Length = 320
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 81 IELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 201 VD--AGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP++ L++
Sbjct: 255 RFRIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEEFLWLLSL 310
>gi|83648561|ref|YP_436996.1| 23S RNA-specific pseudouridylate synthases-like protein [Hahella
chejuensis KCTC 2396]
gi|83636604|gb|ABC32571.1| Pseudouridylate synthases, 23S RNA-specific [Hahella chejuensis
KCTC 2396]
Length = 319
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LD+++ED ++++NK A VVHPA G+ GT+ + +L P L +PRAGIVHR
Sbjct: 77 EAQPIALDVVFEDEHLLVINKQADFVVHPAAGHSDGTVVNAVLHHCPALSELPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMV+AK++ ++ LV QL+ + R+Y +V+G G++ AAI R+P NR
Sbjct: 137 LDKDTTGLMVIAKTLIAHNSLVEQLQAREMGREYECVVYGELTGGGVVEAAIGRHPQNRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V++ K A+T+Y RL I + + +R L+TGRTHQIRVHM + H I+GD
Sbjct: 197 KMAVTR--GGKDAVTHY-RL---IRRWRGFTHLRLKLETGRTHQIRVHMAHIHHSILGDP 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S I F RQALHA L L HP L W + LP+D+ L+
Sbjct: 251 LYGSRPRLPKGLSAETIEYLQTFGRQALHAKALELSHPVTGELLSWEVGLPEDMINLL 308
>gi|194366931|ref|YP_002029541.1| RluA family pseudouridine synthase [Stenotrophomonas maltophilia
R551-3]
gi|194349735|gb|ACF52858.1| pseudouridine synthase, RluA family [Stenotrophomonas maltophilia
R551-3]
Length = 329
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 145/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I LD+++ED ++++NK GLVVHP GN SGTL + LL P + +PRAGI
Sbjct: 77 TDAQPEDIPLDVLFEDEYLLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SG+MVVAK++++ LV QL V R+YLA+V G G +A I R+P
Sbjct: 137 VHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPR 196
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R+KM V + + K A+T+Y ER + H +L C L+TGRTHQIRVHM + H
Sbjct: 197 DRLKMGVRE--DGKEAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHIRH 247
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
IVGD LYG K S L+ F RQALHA L +HP ++ +P D+
Sbjct: 248 PIVGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFVHPITGETVRNTAPVPADM 307
Query: 246 SKLI 249
L+
Sbjct: 308 LHLL 311
>gi|399888864|ref|ZP_10774741.1| pseudouridylate synthase [Clostridium arbusti SL206]
Length = 305
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 160/234 (68%), Gaps = 17/234 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGI 79
E + I +DI+YED+++I+++K G+VVHPA GN +GTL + LL L IN + R GI
Sbjct: 74 EAEKIDIDILYEDSDVIVVDKQQGMVVHPAPGNYTGTLVNALLYHCKDLSGINGINRPGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNP 138
VHR+DK++SG++VVAK+ KS+ L QLK H + R YLA+V GI K++ G I+A + R+P
Sbjct: 134 VHRIDKDTSGVLVVAKNDKSHKFLAEQLKEHSMNRIYLALVEGIIKVDEGTIDAPLGRHP 193
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHG 197
RIK+++ K N + A+T+Y+ +I + K+ +L+ C L+TGRTHQIRVHM +GH
Sbjct: 194 VERIKISIVK--NGREAVTHYK-----VIERFKNNTLVECKLETGRTHQIRVHMAHIGHP 246
Query: 198 IVGDNLYGKKYSKSLIFN--RQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+VGD LYG K + FN Q LHA KLG IHP + + +++ ++PD +++I
Sbjct: 247 LVGDPLYGYKKQR---FNLKGQMLHAKKLGFIHPTSKVYMEFESSIPDYFNRII 297
>gi|114561852|ref|YP_749365.1| RluA family pseudouridine synthase [Shewanella frigidimarina NCIMB
400]
gi|114333145|gb|ABI70527.1| ribosomal large subunit pseudouridine synthase D [Shewanella
frigidimarina NCIMB 400]
Length = 324
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 142/233 (60%), Gaps = 17/233 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED+ I+++NK AGLVVHP GN GTL + LL P + +VPRAGIVHRLDK+
Sbjct: 82 IDLNIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLYHCPDIEHVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ HLV L+ + R+Y A+V G G ++ I R+ R +M V
Sbjct: 142 TTGLMVVAKTVEAQTHLVAALQARDIVREYEAIVLGTMTAGGTVDEPIERHATRRTQMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+P++T+Y R++ + H L R L++GRTHQIRVHM +GH +VGD +YG
Sbjct: 202 I--HGGRPSVTHY-RVSEKF--RAHTRL-RLRLESGRTHQIRVHMAHIGHELVGDPVYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
K S F RQALHA +L L HP + W +PDD+ +L
Sbjct: 256 RPRPPKSASPEFFELLKNFKRQALHAVRLELAHPFTCEIMTWHAPIPDDMVEL 308
>gi|255528132|ref|ZP_05394960.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|296186658|ref|ZP_06855060.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|255508173|gb|EET84585.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|296048695|gb|EFG88127.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
Length = 305
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 150/231 (64%), Gaps = 11/231 (4%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGI 79
E + I LDI+YED+++I++NK G+VVHPA G +GTL + LL L IN V R GI
Sbjct: 74 EPEDIPLDIVYEDSDVIVVNKPQGMVVHPASGVYTGTLVNALLNHCSDLSGINGVTRPGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNP 138
VHR+DK++SG++VVAK+ KS+ L QLK H + R Y A+V GI K + G I+ + R+P
Sbjct: 134 VHRIDKDTSGILVVAKNDKSHNKLAEQLKDHSMTRAYTALVEGILKEDEGTIDKPLGRHP 193
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
RIK++V K + K A+T+Y L N +L+ C L+TGRTHQIRVHM ++GH +
Sbjct: 194 VERIKISVIK--DGKRAVTHYRVLERFKSN----TLVECVLETGRTHQIRVHMAYIGHPL 247
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
VGD +YG K K N Q LHA KLG IHP N +++ +LPD K++
Sbjct: 248 VGDPVYGYKKQK-FNLNGQMLHAKKLGFIHPSTNEYIEFTSDLPDYFKKVL 297
>gi|389693906|ref|ZP_10182000.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
gi|388587292|gb|EIM27585.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
Length = 332
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 149/248 (60%), Gaps = 23/248 (9%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ + L I+YED+++I+++K AGLVVHPA G+ SGTL + L+ E + V R GIV
Sbjct: 80 EAMALAIVYEDDDVIVIDKPAGLVVHPAAGHDSGTLVNALIAHCGESLSGIGGVKRPGIV 139
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIM 135
HRLDK++SGL+VVAK+ ++ L Q H ++R YLA++WG+P + G + AA+
Sbjct: 140 HRLDKDTSGLLVVAKNDLAHQGLAAQFADHGRTGPLERAYLAILWGVPERRRGTVEAALA 199
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGRTHQIRVHMQWL 194
R+ HNR K+ V + A+T+YE L G+ + I SL++C L+TGRTHQIRVHM L
Sbjct: 200 RSTHNREKIVVVGEDRGRYAITHYEVL-EGLPPAQPIASLVQCELETGRTHQIRVHMAHL 258
Query: 195 GHGIVGDNLYGKKYSKS------------LIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
GH ++GD YG + RQALHA LG HP++ L++ LP
Sbjct: 259 GHPLLGDATYGSGFKTKANRLSEPQKEALTALGRQALHAAILGFEHPRSGEFLRFESPLP 318
Query: 243 DDISKLIT 250
D+ +L+
Sbjct: 319 PDLDRLLA 326
>gi|226313367|ref|YP_002773261.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
gi|226096315|dbj|BAH44757.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
Length = 309
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 155/246 (63%), Gaps = 20/246 (8%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
+ P K + E + LDI+YED++++++NK GLVVHPA G+ SGTL + LL
Sbjct: 71 VPPPKEMAIQPEE---MSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTLVNGLLAHCKD 127
Query: 71 L--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL 126
L IN V R GIVHR+DK++SGL++VAK+ K+++ L QLK H V RKY+A+V G IP
Sbjct: 128 LSGINGVLRPGIVHRIDKDTSGLLMVAKNDKAHMGLAEQLKAHTVNRKYVALVHGVIPHE 187
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGR 183
G I A I R+P NR +M V N+KPA+T++ ER K +++ L+TGR
Sbjct: 188 MGTIEAPIGRDPKNRQQMAVVFE-NSKPAVTHFIVLERF-------KEYTMVELKLETGR 239
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
THQIRVHM+++ + + GD YG K +L + QALHA LG IHP+ +L++ +P
Sbjct: 240 THQIRVHMKYIDYPLAGDPKYGPK--NTLELDGQALHAKTLGFIHPRTGEQLEFEAPMPK 297
Query: 244 DISKLI 249
++ +I
Sbjct: 298 EMLDVI 303
>gi|406661144|ref|ZP_11069268.1| Ribosomal large subunit pseudouridine synthase D [Cecembia
lonarensis LW9]
gi|405555086|gb|EKB50136.1| Ribosomal large subunit pseudouridine synthase D [Cecembia
lonarensis LW9]
Length = 347
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 152/244 (62%), Gaps = 25/244 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP----RAGIVHR 82
I LDI+YED++++++NK AG+VVHPA GN +GTL + L+ + L +P R G+VHR
Sbjct: 97 IPLDIVYEDDQLLVVNKPAGMVVHPAHGNWTGTLVNGLVYYFNQLPTMPGNTGRPGLVHR 156
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNR 141
+DK++SGL+V+AKS ++ L NQ H ++R YLA+VWG PK + G I A + R+ +R
Sbjct: 157 IDKDTSGLLVIAKSEQAMTDLANQFFHHQIERTYLALVWGEPKDDMGTIVAHVGRSAKDR 216
Query: 142 IKMTVSKN-FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
M + K A+T+++ L +++SLI+CNL+TGRTHQIR HM++LGH +
Sbjct: 217 KVMEAYPDGSQGKHAVTHWKVLK----RLRYVSLIQCNLETGRTHQIRAHMKFLGHPLFN 272
Query: 201 DNLY-------GKKYSKSLIF--------NRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
D +Y G ++SK F RQALHA LG IHP + KL + LP+D
Sbjct: 273 DAMYGGDKIRKGTQFSKYKTFVQHCFDLIPRQALHAMSLGFIHPLSKQKLYFEAALPEDF 332
Query: 246 SKLI 249
+ ++
Sbjct: 333 ASVL 336
>gi|348590397|ref|YP_004874859.1| ribosomal large subunit pseudouridine synthase D [Taylorella
asinigenitalis MCE3]
gi|347974301|gb|AEP36836.1| Ribosomal large subunit pseudouridine synthase D [Taylorella
asinigenitalis MCE3]
Length = 323
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 147/244 (60%), Gaps = 5/244 (2%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ I+P ++ + E+ I ++ E E I++ K AGLV HP GN SGTL + LL +
Sbjct: 71 VCIQPDEHTKAFQPEQ--IDFQVLEESQEWIVIGKPAGLVTHPGAGNWSGTLLNGLLFKF 128
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L VPRAGIVHRLDK++SG++VVA++ + + V QL+ + R Y+A+V G +G
Sbjct: 129 PELSYVPRAGIVHRLDKDTSGILVVARTEAAQLDFVKQLQSRTMGRSYIAIVSGCTSDSG 188
Query: 129 MINAAIMRNPHNRIKMTVSKNFN---AKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
I I R+P N IKM +K N K A T++ L+ + K++SL+ C L+TGRTH
Sbjct: 189 SITDDIGRDPRNPIKMASTKQSNPIAPKEARTHFTTLSHAEFDGKNLSLLLCKLETGRTH 248
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
QIRVH+ + H ++GD+LYG K+ RQ LHAYKL PK+ +L + + D+
Sbjct: 249 QIRVHLSSINHPLLGDSLYGGPDLKNFSNLRQMLHAYKLEFNDPKDGNRLAFTCEIEKDM 308
Query: 246 SKLI 249
+++
Sbjct: 309 REVM 312
>gi|85711025|ref|ZP_01042085.1| Pseudouridylate synthase [Idiomarina baltica OS145]
gi|85694938|gb|EAQ32876.1| Pseudouridylate synthase [Idiomarina baltica OS145]
Length = 322
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 146/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + + I+LDI+YED +I+I+NK AGLVVHP G GTL + LL P + +VPRAGI
Sbjct: 75 ERYQAQPIELDIVYEDEDILIINKPAGLVVHPGAGAPDGTLLNGLLHYDPDIDHVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
+HRLDK+++GLMVVA++I + LV+ ++ + R+Y A+ G+ GM++ I R+P
Sbjct: 135 IHRLDKDTTGLMVVARNIPAQTQLVDMMQKREITREYEAVCNGVMTAGGMVDEPIGRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V + KPA+T+Y ER + H +L+R L++GRTHQIRVHM + H
Sbjct: 195 KRTHMAVVS--SGKPAVTHYRVVERF------RAH-TLLRLRLESGRTHQIRVHMAHIRH 245
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+VGD YG K+ S + F+RQALHA KL L HP + + PDD
Sbjct: 246 PLVGDLTYGGRPRPPKQASDEFLASLRGFSRQALHAAKLSLHHPITGDWMSFEAPRPDDF 305
Query: 246 SKLI 249
LI
Sbjct: 306 VALI 309
>gi|344924187|ref|ZP_08777648.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Odyssella thessalonicensis L13]
Length = 328
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 150/247 (60%), Gaps = 21/247 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE----IYPFLINVPRAGIVHR 82
I L+I+YED +++++NK AG+VVHPA G+ TL + LL + V R GIVHR
Sbjct: 83 ILLNIVYEDEDLLVINKQAGMVVHPAPGHPQETLVNALLAHCGNSLSGIGGVKRPGIVHR 142
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
LDK++SGLMVVAK+ ++ L +Q + R YLA +WG+ L+G +N+ I R+P +R
Sbjct: 143 LDKDTSGLMVVAKNDNAHHVLCSQFSDRSLSRTYLAFIWGVATPLSGSVNSLIGRHPRHR 202
Query: 142 IKMTVSKNFNAKPALTYYERLA-----TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
KM V N K ALTYY L+ G K ISL+ C L TGRTHQIRVH+ LGH
Sbjct: 203 QKMAVV-NRKGKEALTYYHTLSIYGQPEGEALK--ISLVECKLATGRTHQIRVHLASLGH 259
Query: 197 GIVGDNLYGK--KYSKSL------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
+VGD LYG+ K ++SL F+RQALHA ++ IHP+ + + +LPDD+ KL
Sbjct: 260 PLVGDPLYGRVPKGAQSLWPEEVTQFSRQALHAKEISFIHPRTKEIMHFSSDLPDDLQKL 319
Query: 249 ITFSGIK 255
K
Sbjct: 320 EALCKAK 326
>gi|157369129|ref|YP_001477118.1| 23S rRNA pseudouridine synthase D [Serratia proteamaculans 568]
gi|157320893|gb|ABV39990.1| pseudouridine synthase, RluA family [Serratia proteamaculans 568]
Length = 325
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIALNIVYEDSDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVEALQARDITREYEAVAIGTMTAGGTVEEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S + I F+RQALHA L L HP + ++++W LP D+ LI
Sbjct: 252 LYGGRPRPPKGASDAFIATLRGFDRQALHATMLRLYHPISGIQMEWHAPLPQDMVDLI 309
>gi|39933445|ref|NP_945721.1| pseudouridine synthase [Rhodopseudomonas palustris CGA009]
gi|39647291|emb|CAE25812.1| possible pseudouridine synthases [Rhodopseudomonas palustris
CGA009]
Length = 407
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 146/247 (59%), Gaps = 25/247 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIV 80
+ I LDI+YED +II+LNK GLVVHPA G+ +GTL + L+ ++ V R GIV
Sbjct: 155 EAIALDIVYEDADIIVLNKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVRRPGIV 214
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIM 135
HRLDK+++GLMV AK+ K++ L Q H ++R YLA VWG+P + G I+A I
Sbjct: 215 HRLDKDTTGLMVAAKNDKAHQSLSAQFADHGRTGELRRGYLAFVWGVPGRKYGTIDAPID 274
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLA--TGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
R+PH R KM V ++ + A+T++E L +G K +LI C L+TGRTHQIRVH+
Sbjct: 275 RHPHAREKMAVRQS--GREAITHWEVLENFSGKDGKPVAALIACQLETGRTHQIRVHLAH 332
Query: 194 LGHGIVGDNLYGKKYSKS------------LIFNRQALHAYKLGLIHPKNNLKLKWRINL 241
LGH ++GD++YG + RQALHAY L L HP L W L
Sbjct: 333 LGHPLLGDDVYGPHFKTKANQLAPAGRAALAGLGRQALHAYLLTLEHPSTGEVLTWESPL 392
Query: 242 PDDISKL 248
P D++ L
Sbjct: 393 PADLAHL 399
>gi|410631287|ref|ZP_11341964.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola arctica
BSs20135]
gi|410149110|dbj|GAC18831.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola arctica
BSs20135]
Length = 327
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + + + I L+I++ED I+++NK LVVHP GN GT+ + L
Sbjct: 64 GEELIEIDAQIEMQVQHKGQD-IDLNIVFEDEHILVINKPMNLVVHPGAGNSDGTVLNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P ++NVPRAGIVHRLDK+++GLMVVAK+I + HLV QL+ + R+Y A+V G
Sbjct: 123 LNHAPEIVNVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEQLQAREISREYEAVVVGTM 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPA+T+Y R+ + H + IR L++GRT
Sbjct: 183 VAGGTVDEPIGRHPTKRTSMAVRE--SGKPAMTHY-RVKEKF--RAH-TYIRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L + +VGD YG K +++++ F RQALHA +L L HP
Sbjct: 237 HQIRVHMSHLRYPLVGDQAYGGRPRPPKACNENMVNMLRMFRRQALHAIQLELTHPVTGE 296
Query: 234 KLKWRINLPDDISKLI 249
L W+ LP D +L+
Sbjct: 297 WLSWQAPLPKDFVELL 312
>gi|261856619|ref|YP_003263902.1| pseudouridine synthase [Halothiobacillus neapolitanus c2]
gi|261837088|gb|ACX96855.1| pseudouridine synthase, RluA family [Halothiobacillus neapolitanus
c2]
Length = 340
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDIIYED+ II+LNKS +VVHPA GN GTL + LL P L++VPRAG+VHRLDK
Sbjct: 79 IPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVPRAGVVHRLDKQ 138
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVAK++ ++ LV L ++R+Y +V G G ++A I R+P +R + V
Sbjct: 139 TSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAGGTVDAPIGRHPRDRQRQAV 198
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ K A+T+Y L + + +R L+TGRTHQIRVHM + H ++GD +YG
Sbjct: 199 TA--TGKRAVTHYRVLQ----HYGEQTWLRVQLETGRTHQIRVHMAHIRHPVIGDPVYGG 252
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
+ S +LI F RQALHA L L HP ++++ +PDD+ +LI
Sbjct: 253 RPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMPDDMRELIAL 308
>gi|254482837|ref|ZP_05096074.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
gi|214036918|gb|EEB77588.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
Length = 312
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 142/236 (60%), Gaps = 20/236 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDIIYED I+++NK AGLVVHPA G+ GTL + LL P + +PR GIVHRLD
Sbjct: 67 IDLDIIYEDAHILVVNKPAGLVVHPAAGHPDGTLVNALLAHSPEMAQLPRGGIVHRLDME 126
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MV AKS+ ++ LV+QL+ V+R+Y+A+ G+ G ++ + R+P R KM V
Sbjct: 127 TSGIMVAAKSLLAHQDLVSQLQERTVRREYVAVCIGVMTGGGTVDEPMGRHPKQRKKMAV 186
Query: 147 SKNFNAKPALTYYERLATGIINKK--HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
KPA+T+Y + K+ H + I NL+TGRTHQIRVHM + +VGD Y
Sbjct: 187 LV-VGGKPAITHYR------VTKRYGHHTRIAVNLETGRTHQIRVHMAHKHYPLVGDPTY 239
Query: 205 G------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G K S+ LI F RQALHA LGL HP+ ++ + LP D+ L+
Sbjct: 240 GGRPRIPKGASEELIAALRGFPRQALHARALGLFHPETGEEMNFECPLPTDLQGLL 295
>gi|371776249|ref|ZP_09482571.1| ribosomal large subunit pseudouridine synthase D [Anaerophaga sp.
HS1]
Length = 361
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 146/247 (59%), Gaps = 31/247 (12%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL---LEIYP-FLINVPRAGIVHR 82
I LDI++EDNE+I++NK G+VVHP GN +GTL + L L+ +P F PR G+VHR
Sbjct: 109 IPLDIVFEDNELIVVNKPPGMVVHPGYGNYTGTLVNALAWHLKDHPWFQSKDPRPGLVHR 168
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNR 141
+DK++SGL+VVAK+ + HL Q R Y A+VWGI K + G I I RNP +R
Sbjct: 169 IDKDTSGLLVVAKTENAKTHLAQQFFNKTTSRTYQALVWGIVKEDEGTIVGNIGRNPRDR 228
Query: 142 IKMTV-SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
+MTV + KPA+T+Y ERL +++L+ C L+TGRTHQIRVH++ +GH
Sbjct: 229 KQMTVFPDDTQGKPAVTHYKVLERLG-------YVTLLECRLETGRTHQIRVHLKHIGHT 281
Query: 198 IVGDNLYG----------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
+ D YG KY + + I RQALHA LG HP +++ LP
Sbjct: 282 LFNDERYGGNQILKGTTFTKYRQFVKNCFSILPRQALHAKTLGFQHPTTGEMMEFDSPLP 341
Query: 243 DDISKLI 249
DD++ L+
Sbjct: 342 DDMTALL 348
>gi|392552080|ref|ZP_10299217.1| 23S rRNA pseudouridine synthase D [Pseudoalteromonas spongiae
UST010723-006]
Length = 325
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 143/238 (60%), Gaps = 18/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LD +YED+ I+++NK AGLVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQQIDLDKVYEDDHILVVNKPAGLVVHPGAGNPDGTMLNALLHDYPDIDSVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMV+AK++ + HLV L+ R+Y A+ G GM++A I R+ R
Sbjct: 138 LDKDTTGLMVIAKTVPAQTHLVANLQARRNFTREYEAICNGTMTAGGMVDAPIGRHHTKR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V++ KPA+T+Y R+A + H L R L+TGRTHQIRVHM L H ++GD
Sbjct: 198 THMAVTE--FGKPAVTHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAHLNHALIGD 251
Query: 202 NLY------GKKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
LY K + I F RQALHA KL L HP + W+ +PDD+ L
Sbjct: 252 PLYHGRPRPPKNATPEFIEVLRNFKRQALHAVKLELEHPITGELMSWQAPIPDDMKLL 309
>gi|109897660|ref|YP_660915.1| RluA family pseudouridine synthase [Pseudoalteromonas atlantica
T6c]
gi|109699941|gb|ABG39861.1| ribosomal large subunit pseudouridine synthase D [Pseudoalteromonas
atlantica T6c]
Length = 327
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 151/256 (58%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + ++ I+L+I+YED I+++NK LVVHP GN SGT+ + L
Sbjct: 64 GEELIEIDASIEIQERHSAQE-IELNIVYEDEHILVINKPTNLVVHPGAGNASGTILNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + +VPRAGIVHRLDK+++GLMVVAK+I + HLV +L+ + R+Y A+V+G
Sbjct: 123 LSHVPEIASVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEKLQAREISREYEAVVYGNL 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPALT+Y R+ H +R L++GRT
Sbjct: 183 IAGGSVDEPIGRHPTKRTSMAVVQ--SGKPALTHY-RVKHKYRAHTH---LRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L H +VGD YG K S+ +I F RQALHA +L L HP
Sbjct: 237 HQIRVHMAHLRHPLVGDQAYGGRPRLPKAASELMIETIRGFKRQALHAIQLELEHPITGE 296
Query: 234 KLKWRINLPDDISKLI 249
+ ++ LPDD L+
Sbjct: 297 WMSFQAPLPDDFVNLL 312
>gi|344941273|ref|ZP_08780561.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
gi|344262465|gb|EGW22736.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
Length = 314
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 156/256 (60%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I + + + E + I L+II+ED ++I+NK AGLVVHPAIGN +GTL + L
Sbjct: 57 GGETIALDAEAEIVIT-AEPEPIPLEIIFEDESLLIVNKPAGLVVHPAIGNWNGTLLNAL 115
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L L +PRAGIVHR+DK +SGL++VAK+++++ L QL+ + R+YLA+ G
Sbjct: 116 LNHDSSLETLPRAGIVHRIDKETSGLLMVAKTLQAHNSLTQQLQDRDITREYLAITRGRM 175
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P +R + V + N K A+T+Y G +H +L++ L+TGRT
Sbjct: 176 TAGGTVDEPIGRHPTDRKRYAVRE--NGKHAVTHYR---VGQRFTRH-TLVQVKLETGRT 229
Query: 185 HQIRVHMQWLGHGIVGDNLYGKKY------SKSL-----IFNRQALHAYKLGLIHPKNNL 233
HQIRVHM + ++GD +YG ++ S+ L F RQALHA KLGL HP +
Sbjct: 230 HQIRVHMAHIRFPLLGDQVYGGRFQMPPDCSEQLEKELRSFKRQALHAAKLGLQHPVTDE 289
Query: 234 KLKWRINLPDDISKLI 249
L+W LP+D+ +L+
Sbjct: 290 YLEWEQPLPEDMIRLL 305
>gi|115522842|ref|YP_779753.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
BisA53]
gi|115516789|gb|ABJ04773.1| ribosomal large subunit pseudouridine synthase D [Rhodopseudomonas
palustris BisA53]
Length = 327
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 148/245 (60%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI++ED++II+++K GLVVHPA G+ +GTL + L+ ++ V R GIVHR
Sbjct: 77 IALDIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVRRPGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMV AK+ +++ L Q H ++R Y A VWG+P + +G I+A I R+
Sbjct: 137 LDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGALRRGYYAFVWGVPNRPHGTIDAPIDRH 196
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PHNR KM V + + A+T++E L T G K SLI C L+TGRTHQIRVH+ +G
Sbjct: 197 PHNREKMAVREG--GRDAITHWEVLETFAGRSGKPVASLIACQLETGRTHQIRVHLAHIG 254
Query: 196 HGIVGDNLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + RQALHAY L L HP + +W +LP
Sbjct: 255 HPLLGDGVYGPHFKTKASALPPAARAALEALGRQALHAYLLVLEHPSSGEIREWTSDLPA 314
Query: 244 DISKL 248
D++KL
Sbjct: 315 DLAKL 319
>gi|42520963|ref|NP_966878.1| ribosomal large subunit pseudouridine synthase D [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410704|gb|AAS14812.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia endosymbiont of Drosophila melanogaster]
Length = 276
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 155/260 (59%), Gaps = 30/260 (11%)
Query: 10 IIKPKKNFFLNKTEKKV---------IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
I+KP + + ++ + + IKL+I+YED +II+L+K +GL VHP +GT
Sbjct: 20 IVKPDEEYVVHLVQPDISTSIEPNYDIKLNIVYEDEDIIVLSKQSGLTVHPG----AGTN 75
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
D LL +NV R GIVHRLDK++SGLMV+AK+ ++ L L ++R+YLA+V
Sbjct: 76 NDTLLNAVIAHLNV-RPGIVHRLDKDTSGLMVIAKNEAAHSFLSELLSNRKIKREYLAVV 134
Query: 121 WG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNL 179
WG + G I I N+ M V+K K A+T+Y L +I + +SL++C L
Sbjct: 135 WGTLSSQQGTIKTNIAPKRGNKEMMCVTK-ITGKLAITHY--LVQKVIGQ--VSLVKCTL 189
Query: 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI----------FNRQALHAYKLGLIHP 229
+TGRTHQIRVHM +GH IVGD +YGK SKS FNRQALHAY LGL HP
Sbjct: 190 ETGRTHQIRVHMSHIGHSIVGDQVYGKNSSKSTKYAKNSSFIRNFNRQALHAYTLGLYHP 249
Query: 230 KNNLKLKWRINLPDDISKLI 249
K+ +++ +LP DI LI
Sbjct: 250 KSKEYMEFVSDLPQDIKTLI 269
>gi|332290082|ref|YP_004420934.1| 23S rRNA pseudouridine synthase D [Gallibacterium anatis UMN179]
gi|330432978|gb|AEC18037.1| 23S rRNA pseudouridine synthase D [Gallibacterium anatis UMN179]
Length = 324
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 143/237 (60%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED I+++NKS LVVHP GN T+ + LL YP + VPRAGIVHRLDK+
Sbjct: 81 IPLDIVYEDEHILVINKSKDLVVHPGAGNPDNTVLNALLYHYPPIAEVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV L+ + R+Y A+ GI G ++ + R+P R M +
Sbjct: 141 TTGLMVVAKTIEAQTKLVRALQKRQITREYEAIASGIMTKGGTVDQPMARHPTKRTHMAI 200
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ KPA+T+Y ER ++ + +R L+TGRTHQIRVHM ++ H ++GD
Sbjct: 201 --HPLGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAYIAHPLLGDQT 251
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S++L+ F RQALHA L L HP + ++W LPDD +L+
Sbjct: 252 YGGRPKPPKGASEALLEVLRQFQRQALHAIMLRLEHPISRELMEWYAPLPDDFVELV 308
>gi|388567414|ref|ZP_10153848.1| RluA family pseudouridine synthase [Hydrogenophaga sp. PBC]
gi|388265436|gb|EIK90992.1| RluA family pseudouridine synthase [Hydrogenophaga sp. PBC]
Length = 345
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 145/246 (58%), Gaps = 12/246 (4%)
Query: 13 PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI 72
P+ F+ + + LD+++ED +++++K AGLVVHPA G+ GTL + LL +
Sbjct: 99 PQARAFVAEP----MALDVVFEDEHLLVIDKPAGLVVHPAAGHWGGTLLNGLLAHHAGAA 154
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM--I 130
+PRAGIVHRLDK++SGLM+VAKS ++ LVN + V R+YLA+ G + G+ +
Sbjct: 155 ALPRAGIVHRLDKDTSGLMMVAKSRQAMQALVNAIAAREVGRQYLAIAHGAWRHEGLRSV 214
Query: 131 NAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
I R+P NR++M V KPA + + + L+ C L TGRTHQIRVH
Sbjct: 215 REPIGRDPRNRLRMAVVGEGAGKPAQSDF----LALDRSDDAMLVACKLHTGRTHQIRVH 270
Query: 191 MQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
M WLGH +VGD LYG + L RQALHA L L HP + L + + P+D+S +
Sbjct: 271 MAWLGHPLVGDALYGGRPLWGL--QRQALHAISLRLSHPVSGAPLAYWRDPPEDLSAALA 328
Query: 251 FSGIKW 256
G+++
Sbjct: 329 AGGLRY 334
>gi|339477953|ref|YP_004706773.1| putative pseudouridine synthase, RluA family [Candidatus Moranella
endobia PCIT]
gi|338172504|gb|AEI74905.1| putative pseudouridine synthase, RluA family [Candidatus Moranella
endobia PCIT]
Length = 326
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 144/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED ++I+NK VVHP GN GT+ + LL P +I VPRAGIVHR
Sbjct: 78 EAQAIPLNIVYEDEALLIINKPRNQVVHPGAGNTDGTMLNALLYYIPSIIAVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL+VVAK++ + L+ L+ H + RKY A+V G NG + I R+ R
Sbjct: 138 LDKDTTGLIVVAKNVTAQTRLIESLQAHEITRKYEAIVIGTMTANGTVEQPIARHTIKRK 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V+ + KPA+T+Y + + H LI C L+TGRTHQIRVHM L H IVGD
Sbjct: 198 QM-VTHSL-GKPAVTHYRIMEQ---FRAHTRLILC-LETGRTHQIRVHMAHLNHPIVGDP 251
Query: 203 LYGK-----KYSKSLI------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYGK KY+ + F+RQALH+ L L HP ++ ++W +P D+ LI
Sbjct: 252 LYGKRPRLSKYASKALNDVLCRFDRQALHSTFLRLYHPITSIPMEWYAPMPQDMVTLI 309
>gi|407804425|ref|ZP_11151248.1| pseudouridylate synthase [Alcanivorax sp. W11-5]
gi|407021614|gb|EKE33379.1| pseudouridylate synthase [Alcanivorax sp. W11-5]
Length = 323
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 157/256 (61%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E ++I + ++ T + V L I+YED +I++NK AGLVVHPA G+ GTL + L
Sbjct: 64 GSEELVINAELEAEVSDTAQPVA-LPIVYEDEHLIVINKPAGLVVHPAAGHQDGTLLNGL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L + ++PRAGIVHRLD++++GLMVVA++++++ LV QL+ + R+Y A+ G+
Sbjct: 123 LHLDERQASLPRAGIVHRLDRDTTGLMVVARTLEAHASLVEQLQDKSLYREYEAVAVGVM 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G +NA I R+P +R + V + + K A+T+Y RL H IR L+TGRT
Sbjct: 183 TGGGTVNARIGRHPQDRKRQAVVE--SGKNAVTHY-RLIQRFRGHTH---IRVQLETGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYGKK------YSKSL-----IFNRQALHAYKLGLIHPKNNL 233
HQIRVHM + + +VGD +YG + S L F RQALHA KLGLIHP++
Sbjct: 237 HQIRVHMAHVRYPLVGDPVYGGRIRLPAGASPELREALQSFRRQALHARKLGLIHPESGE 296
Query: 234 KLKWRINLPDDISKLI 249
+++ L +D+S L+
Sbjct: 297 YMEFEAPLAEDLSALL 312
>gi|153875465|ref|ZP_02003256.1| ribosomal large subunit pseudouridine synthase D [Beggiatoa sp. PS]
gi|152068071|gb|EDN66744.1| ribosomal large subunit pseudouridine synthase D [Beggiatoa sp. PS]
Length = 321
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 148/238 (62%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L ++YED +I+++NK AGL+VHP G+ TL + LL P L +PRAGIVHR
Sbjct: 77 QPQTLPLTLLYEDKDILVVNKPAGLIVHPGAGHQQNTLVNALLNYAPELAQLPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK++SG++VVA+S+ ++ HLV QL+ R+Y A+V G ++A I R+P R
Sbjct: 137 LDKDTSGVLVVARSLPAHKHLVEQLQNREFLREYKAIVIGALISGSTVDAPIGRHPTQRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V K KPA+T+Y L ++ + IR L+TGRTHQIRVH+ + ++GD+
Sbjct: 197 RMAVVK--KGKPAITHYRVLQRYRVH----TFIRVQLETGRTHQIRVHLAHKHYPLIGDS 250
Query: 203 LYGKK----------YSKSL-IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG + + ++L F RQALHA +LGL HP + ++W LPDD+ +L+
Sbjct: 251 VYGGRLQIPPNSSDTFKEALRTFPRQALHAERLGLTHPISGEMMQWTAPLPDDMQQLL 308
>gi|333369295|ref|ZP_08461422.1| ribosomal large subunit pseudouridine synthase D [Psychrobacter sp.
1501(2011)]
gi|332974183|gb|EGK11117.1| ribosomal large subunit pseudouridine synthase D [Psychrobacter sp.
1501(2011)]
Length = 456
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 147/240 (61%), Gaps = 19/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED+ ++++NK G+VVHP GN +GTL + LL YP ++PRAG+VHR
Sbjct: 216 EPEDIALDIMYEDDSVLVINKPVGMVVHPGAGNWTGTLVNGLLYHYPNQAHLPRAGLVHR 275
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP---KLNGMINAAIMRNPH 139
+DKN+SGL+V+ K+ + + L +QL+ V R Y +V G K I+A I R+
Sbjct: 276 IDKNTSGLLVIGKTKAAQMELQDQLRDKTVYRHYQCIVAGDVASLKRQRTIDAPIGRHRT 335
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R KMTVS KPA+T+ + +N + SL+ L+TGRTHQIRVH+ +GH I+
Sbjct: 336 QRTKMTVSS--VGKPAVTHIMNITA--LNDNY-SLLDVQLETGRTHQIRVHLSHIGHPII 390
Query: 200 GDNLYGKKY---------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD++YG + + I F RQALHAY+LG +HP+ ++ LPDDI KL
Sbjct: 391 GDDVYGNRQQLRAGLTPEQREAIQKFPRQALHAYQLGFVHPETGEDIEVTAPLPDDIIKL 450
>gi|319943653|ref|ZP_08017934.1| ribosomal large subunit pseudouridine synthase D [Lautropia
mirabilis ATCC 51599]
gi|319742886|gb|EFV95292.1| ribosomal large subunit pseudouridine synthase D [Lautropia
mirabilis ATCC 51599]
Length = 332
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 138/243 (56%), Gaps = 4/243 (1%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E I ++P+ + L I+++D +I +++K AGLV HPA GN TL +
Sbjct: 71 LKGVESIEVEPQPLESDTAFAPDPVPLAIVHQDADITVIDKPAGLVTHPAPGNWRNTLMN 130
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL P +PRAGIVHRLD+++SGL+V A+S +++ L QL + R+YLA+ G
Sbjct: 131 GLLHADPKAARLPRAGIVHRLDRDTSGLLVCARSERAFASLTAQLASRQMGRRYLAIACG 190
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G + I R+ NR++M V + KPA T+Y LA + I C L++G
Sbjct: 191 QTPAQGTVEGNIGRDERNRLRMAVVQPPAGKPARTHYRLLAA--SPDAEAAAILCKLESG 248
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
RTHQIRVHM +GH +VGD LYG K F RQALHA++L LIHP + +P
Sbjct: 249 RTHQIRVHMAHIGHPLVGDTLYGGKPLAG--FARQALHAWQLQLIHPATQQSQVFVAPIP 306
Query: 243 DDI 245
D+
Sbjct: 307 PDL 309
>gi|71280552|ref|YP_270573.1| 23S rRNA pseudouridine synthase D [Colwellia psychrerythraea 34H]
gi|71146292|gb|AAZ26765.1| ribosomal large subunit pseudouridine synthase D [Colwellia
psychrerythraea 34H]
Length = 324
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 151/241 (62%), Gaps = 19/241 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED+ I+++NK AGLVVHP GN GTL + LL YP L VPRAGIVHR
Sbjct: 78 EAQNIPLNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALLHHYPALNVVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + +LV+ L++ + R+Y A+ G+ G+++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIAAQTNLVDALQLREITREYEAVANGVMTAGGLVDEPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+M VS + +P++T+Y ++ K + + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 QMAVS--YIGRPSVTHYR-----VMEKYRLHTRLRLRLETGRTHQIRVHMSHITHPLVGD 250
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+YG K +++L+ F RQALHA L L HP ++ W LP+D +LI
Sbjct: 251 PVYGGRPRPPKNSTEALLMKLRSFKRQALHAAMLSLFHPITGEEMTWHAELPEDFVELIE 310
Query: 251 F 251
Sbjct: 311 L 311
>gi|431931518|ref|YP_007244564.1| RluA family pseudouridine synthase [Thioflavicoccus mobilis 8321]
gi|431829821|gb|AGA90934.1| pseudouridine synthase, RluA family [Thioflavicoccus mobilis 8321]
Length = 336
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L +++ED+ I++++K A LVVHPA GN GTL + LL P L +PRAG+VHRLDK+
Sbjct: 82 IPLRVVFEDDAILVVDKPADLVVHPAAGNPDGTLLNALLHHAPELARLPRAGLVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GL+VVAK++ ++ LV QL V+R+Y A+V G+ G ++A I R+P R +M V
Sbjct: 142 TTGLLVVAKTLTAHRSLVAQLHERTVRREYRALVTGVVVAGGRVDAPIGRHPVQRTRMAV 201
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + +PA+++Y ER + H +L+ L+TGRTHQIRVHM + H +VGD L
Sbjct: 202 VR--DGRPAVSHYRVLERFS------GH-TLLAVRLETGRTHQIRVHMAHIRHPLVGDPL 252
Query: 204 YG-----------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG + + F RQALHA LGL HP + L + + L D++ L+T
Sbjct: 253 YGGRVRVPKGTLPQAAAALTAFPRQALHAIALGLTHPVSGAPLHFEVPLAADLAGLLT 310
>gi|49473932|ref|YP_031974.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
gi|49239435|emb|CAF25784.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
Length = 334
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 154/255 (60%), Gaps = 26/255 (10%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPR 76
K + IKLDI++ED+ +I++NK AGLVVHP GNL+GTL + L+ + + V R
Sbjct: 73 KPSGEAIKLDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNALIYHCGDSLSGIGGVKR 132
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMIN 131
GIVHRLDKN+SG+MVVAK+ ++ +L Q H + R+Y A++WG P N I+
Sbjct: 133 PGIVHRLDKNTSGIMVVAKNDLAHKNLSAQFSDHGRTSALDRRYHALIWGSPNRNVWKID 192
Query: 132 AAIMRNPHNRIKMTV--SKNFNAKPALTYYERLAT-GIINKK--HISLIRCNLKTGRTHQ 186
A + R+PHNR K V S+N +A+ A+T++ L GI + K SL+ C L+TGRTHQ
Sbjct: 193 APLGRSPHNRTKQAVIYSQNPHARHAVTHFSLLEKYGICSDKTSFASLLECRLETGRTHQ 252
Query: 187 IRVHMQWLGHGIVGDNLYGKKYS------KSLI------FNRQALHAYKLGLIHPKNNLK 234
IRVHM +GH +VGD +YG K +I FNRQALHA L HP
Sbjct: 253 IRVHMAHIGHPLVGDTVYGNACKTKSNMLKPIIKNAIDQFNRQALHAASLTFEHPATGKI 312
Query: 235 LKWRINLPDDISKLI 249
+ + +P D+++LI
Sbjct: 313 MSFSSPIPQDMAELI 327
>gi|357041028|ref|ZP_09102810.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
gi|355355887|gb|EHG03690.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
Length = 312
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 155/233 (66%), Gaps = 13/233 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
I LDI YED +II++NK G+VVHPA GN SGTL + LL L IN V R GIVHR+
Sbjct: 79 IPLDIFYEDKDIIVVNKPRGMVVHPAEGNYSGTLVNALLHHCQDLSGINGVLRPGIVHRI 138
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRI 142
DK++SGL++VAK+ ++ HL QLK H V+R YLA+V G+ + G+++A I R+P R
Sbjct: 139 DKDTSGLLMVAKNDLAHEHLAGQLKEHTVRRGYLALVHGVLTSDLGVVDAPIGRHPRERQ 198
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKK-HISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V+ N N K A+T+Y ++N+ + +L++ L+TGRTHQIRVHM ++G+ +VGD
Sbjct: 199 KMAVT-NRNGKAAVTHYR-----VLNRAGNYTLLQLRLETGRTHQIRVHMAYIGYPLVGD 252
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
YG +KS + + Q LHAY LG +HP++ L++ LP +++ + GI
Sbjct: 253 TKYGP--NKSHLLDGQFLHAYLLGFVHPRSGEYLEFTAPLPVELTAKLQRLGI 303
>gi|417851818|ref|ZP_12497499.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338218428|gb|EGP04196.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 324
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 144/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+I + LV L+ + R+Y A+V GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIVCGIMTKGGMVDQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP ++W LP D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMQTLRDFKRQALHAIMLRLEHPITGELMEWHAPLPTDF 304
Query: 246 SKLI 249
+L+
Sbjct: 305 VELV 308
>gi|325577679|ref|ZP_08147954.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
parainfluenzae ATCC 33392]
gi|419846075|ref|ZP_14369332.1| pseudouridine synthase, RluA family [Haemophilus parainfluenzae
HK2019]
gi|325160424|gb|EGC72550.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
parainfluenzae ATCC 33392]
gi|386414370|gb|EIJ28926.1| pseudouridine synthase, RluA family [Haemophilus parainfluenzae
HK2019]
Length = 324
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 142/241 (58%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGI
Sbjct: 74 NRFEPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHAT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRTLMAVHP--MGKPAVTHYRIME----NFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K SK+ F RQALHA L L HP ++W LPDD +L
Sbjct: 248 GDQTYGGRPRPPKNASKAFTEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVEL 307
Query: 249 I 249
+
Sbjct: 308 L 308
>gi|379723203|ref|YP_005315334.1| hypothetical protein PM3016_5487 [Paenibacillus mucilaginosus 3016]
gi|386725924|ref|YP_006192250.1| hypothetical protein B2K_27955 [Paenibacillus mucilaginosus K02]
gi|378571875|gb|AFC32185.1| YlyB [Paenibacillus mucilaginosus 3016]
gi|384093049|gb|AFH64485.1| hypothetical protein B2K_27955 [Paenibacillus mucilaginosus K02]
Length = 329
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 149/230 (64%), Gaps = 15/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRAGIVHRL 83
I LD+IYED+++I++NK G+VVHPA G+ SGTL + LL + + + R GIVHR+
Sbjct: 102 IPLDVIYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLYHCKDLSGINGIMRPGIVHRI 161
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++ AK+ ++ L QLK H RKY+A+V G +P NG ++A I R+P +R
Sbjct: 162 DKDTSGLLMAAKNDLAHAGLTEQLKAHSATRKYIALVHGNVPHENGTVDAPIGRDPKDRK 221
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
TV++ N+K A+T++ ER +L+ L+TGRTHQIRVHM+++GH +V
Sbjct: 222 LYTVTEK-NSKHAVTHFIVLERFGD-------YTLLELKLETGRTHQIRVHMKFIGHPLV 273
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG SK + + QALHA LG HP+ +L + LP+D+++L+
Sbjct: 274 GDPQYGPSKSKGIPMDGQALHAAVLGFKHPRTGEELLFEAPLPEDMNRLL 323
>gi|192288803|ref|YP_001989408.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
TIE-1]
gi|192282552|gb|ACE98932.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
TIE-1]
Length = 334
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 145/247 (58%), Gaps = 25/247 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIV 80
+ I LDI+YED +II+LNK GLVVHPA G+ +GTL + L+ ++ V R GIV
Sbjct: 82 EAIALDIVYEDADIIVLNKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVRRPGIV 141
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIM 135
HRLDK+++GLMV AK+ K++ L Q H ++R YLA VWG+P + G I+A I
Sbjct: 142 HRLDKDTTGLMVAAKNDKAHQSLSAQFADHGRTGELRRGYLAFVWGVPGRKYGTIDAPID 201
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLA--TGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
R+PH R KM V + + A+T++E L G K +LI C L+TGRTHQIRVH+
Sbjct: 202 RHPHAREKMAVRQ--GGREAITHWEVLENFAGKDGKPVAALIACQLETGRTHQIRVHLAH 259
Query: 194 LGHGIVGDNLYGKKY------------SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINL 241
LGH ++GD++YG + + RQALHAY L L HP L W L
Sbjct: 260 LGHPLLGDDVYGPHFKTKANQLAPAGRAALAGLGRQALHAYLLTLEHPSTGEVLTWESPL 319
Query: 242 PDDISKL 248
P D++ L
Sbjct: 320 PADLAHL 326
>gi|421162909|ref|ZP_15621702.1| pseudouridine synthase [Pseudomonas aeruginosa ATCC 25324]
gi|404532676|gb|EKA42549.1| pseudouridine synthase [Pseudomonas aeruginosa ATCC 25324]
Length = 320
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 81 IELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKM-- 198
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 199 AGVDAGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP+D L++
Sbjct: 255 RFRIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLWLLSL 310
>gi|410626517|ref|ZP_11337278.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola mesophila
KMM 241]
gi|410154056|dbj|GAC24047.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola mesophila
KMM 241]
Length = 327
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 150/256 (58%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + ++ I L+I+YED I+++NK LVVHP GN SGT+ + L
Sbjct: 64 GEELIEIDASIEIQERHSAQE-IALNIVYEDEHILVINKPTNLVVHPGAGNASGTILNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + +VPRAGIVHRLDK+++GLMVVAK+I + HLV +L+ + R+Y A+V+G
Sbjct: 123 LSHVPEIASVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEKLQAREISREYEAVVYGNL 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPALT+Y R+ H +R L++GRT
Sbjct: 183 IAGGSVDEPIGRHPTKRTSMAVVQ--SGKPALTHY-RVKHKYRAHTH---LRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L H +VGD YG K S+ +I F RQALHA +L L HP
Sbjct: 237 HQIRVHMAHLRHPLVGDQAYGGRPRLPKAASELMIETIRGFKRQALHAIQLELEHPITGE 296
Query: 234 KLKWRINLPDDISKLI 249
+ ++ LPDD L+
Sbjct: 297 WMSFQAPLPDDFVNLL 312
>gi|365539749|ref|ZP_09364924.1| 23S rRNA pseudouridine synthase D [Vibrio ordalii ATCC 33509]
Length = 324
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 18/256 (7%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G E+I ++ + + E + I L+I+YED++I+++NK VVHP G GT+
Sbjct: 57 MKVMGGEIITVQAELEDE-ERWEAQDIPLNIVYEDDDIMVINKPRDFVVHPGAGTPDGTV 115
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL YP + VPRAGIVHRLDK+++GLMVVAK++ + HLV L+ + R+Y A+V
Sbjct: 116 LNALLFHYPAIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVRALQKRKITREYEAIV 175
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
G GMI+ I R+ R M VS KPA+T+Y R+A ++H L R L+
Sbjct: 176 IGTMTAGGMIDKPIGRHSTKRTLMAVSP--MGKPAVTHY-RVAEHF--REHTRL-RLRLE 229
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHP 229
TGRTHQIRVHM +L H ++GD YG K ++ L F+RQALHA L L HP
Sbjct: 230 TGRTHQIRVHMSYLQHPLLGDTAYGGRARIPKGATQELTDMIRGFDRQALHAVMLRLEHP 289
Query: 230 KNNLKLKWRINLPDDI 245
L++ +PDD+
Sbjct: 290 VTGEMLEFHAPVPDDM 305
>gi|452990186|emb|CCQ98635.1| pseudouridylate synthase [Clostridium ultunense Esp]
Length = 307
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 156/254 (61%), Gaps = 18/254 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ G E++++ P K + I L I+YED +++++NK G+VVHPA GN SGTL
Sbjct: 60 VAVGDEILLLVPPPEAL--KVLPEAIPLQILYEDRDLVVVNKPRGMVVHPAPGNSSGTLV 117
Query: 62 DNLLEIYPFLINVP---RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
+ LL L + R GIVHR+DK +SGL+VVAKS ++++ L QLK H ++R YLA
Sbjct: 118 NALLYHVKDLSGINGILRPGIVHRIDKETSGLLVVAKSDRAHLGLAAQLKEHAMERSYLA 177
Query: 119 MVWG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK--KHISLI 175
+V G P G ++A I R+P +R KM V + K A+T++ ++ + KH +L+
Sbjct: 178 VVNGHFPHRLGTVDAPIGRDPRDRKKMAV--DPKGKHAVTHF-----SVVEELPKH-TLL 229
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKL 235
RC L+TGRTHQIRVHM ++GH IVGD YGK +S QALHA LG IHP + L
Sbjct: 230 RCRLETGRTHQIRVHMSYIGHPIVGDPKYGK--GESYGMEGQALHAATLGFIHPVSGEFL 287
Query: 236 KWRINLPDDISKLI 249
+ LP+D+ L+
Sbjct: 288 HFEAPLPEDMVGLL 301
>gi|378696304|ref|YP_005178262.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae 10810]
gi|301168827|emb|CBW28418.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae 10810]
Length = 324
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NKS LVVHP GN +GT+ + LL YP ++ VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKSKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|406990235|gb|EKE09914.1| hypothetical protein ACD_16C00100G0076 [uncultured bacterium]
Length = 326
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 144/240 (60%), Gaps = 23/240 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIVHR 82
I LDI YED ++I+LNK AGLVVHPA GN GTL + LL E + V R GIVHR
Sbjct: 86 IPLDIFYEDEDLIVLNKPAGLVVHPAPGNPEGTLVNALLNHCGESLSGINGVKRPGIVHR 145
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG--IPKLNGMINAAIMRNPHN 140
LDK++SGLMVVAK+ K++ L QL + R Y A++WG IP G+I I R+PH+
Sbjct: 146 LDKDTSGLMVVAKNDKTHHSLAYQLATREMSRVYQALIWGTLIPH-KGIIEGPIGRDPHH 204
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
R +M + + K A T+Y+ + I + SL+ C L+TGRTHQIRVH+ GH ++G
Sbjct: 205 RQRMALRE--KGKFARTHYKTIK---IFGRLASLVECRLETGRTHQIRVHLASKGHPLIG 259
Query: 201 DNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D LYGKK I RQALHA K+ +HPK+ +L + +LP DI L+
Sbjct: 260 DILYGKKPKGLPCPLDDFLDGQWIKGRQALHAKKISFVHPKSQDRLSFETDLPQDIRILL 319
>gi|381402592|ref|ZP_09927276.1| 23S rRNA pseudouridine synthase D [Pantoea sp. Sc1]
gi|380735791|gb|EIB96854.1| 23S rRNA pseudouridine synthase D [Pantoea sp. Sc1]
Length = 325
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 144/239 (60%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + + LDI+YED +II++NK VVHP GN GT+ + LL YP +++VPRAGIVHR
Sbjct: 78 EPQNLPLDIVYEDEDIIVINKPRDFVVHPGAGNPDGTVLNALLHHYPAIMDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVESLQRREITREYEAVAIGNMTAGGTVEEPISRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHISHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S++ I F+RQALHA L L HP + +++++ +P D+ LI
Sbjct: 252 LYGGRPRPPKGASEAFIATLRGFDRQALHATMLRLYHPISGIEMEFHAAIPQDMVDLIA 310
>gi|253990666|ref|YP_003042022.1| ribosomal large subunit pseudouridine synthase D [Photorhabdus
asymbiotica]
gi|253782116|emb|CAQ85280.1| ribosomal large subunit pseudouridine synthase D [Photorhabdus
asymbiotica]
Length = 325
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 143/238 (60%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I+L+I+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQNIELNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLYRYPEIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMV+AK++ + LV L++ + R+Y A+ G G++ I R+P R
Sbjct: 138 LDKDTTGLMVIAKTVPAQTRLVESLQLREITREYEAVATGRMTAGGIVEEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T Y + + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAITRYRVMEH---FRAHTRL-RLRLETGRTHQIRVHMAHISHSLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG K S F+RQALHA L L HP ++++W LP+D+ LI
Sbjct: 252 LYGGRPRPLKGASDEFREVMRNFDRQALHATMLRLYHPITGIEMEWHAELPEDMVILI 309
>gi|390951599|ref|YP_006415358.1| ribosomal large subunit pseudouridine synthase D [Thiocystis
violascens DSM 198]
gi|390428168|gb|AFL75233.1| ribosomal large subunit pseudouridine synthase D [Thiocystis
violascens DSM 198]
Length = 326
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 142/243 (58%), Gaps = 17/243 (6%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + I LD+++ED ++++NK AGLVVHPA GN GTL + LL P L VPRAGI
Sbjct: 78 DACTAQDIALDLVHEDAHLLVINKPAGLVVHPAAGNPDGTLQNALLHHAPELAKVPRAGI 137
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK++SGL+VVA+++ ++ LV QL+ V R+Y A+ G G I+A + R+P
Sbjct: 138 VHRLDKDTSGLLVVARTLAAHKSLVEQLQARRVHREYRALAVGELVTGGRIDAPVGRHPT 197
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
RI+M V + +PA+T+Y L H +L+ L+TGRTHQIRVH+ L H +V
Sbjct: 198 QRIRMAVVP--HGRPAVTHYRVLER---YPGH-TLLGVELETGRTHQIRVHLTHLHHPLV 251
Query: 200 GDNLYGKKYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG + F RQALHA +LGL HP + + W I + D+ L
Sbjct: 252 GDRTYGGRPRPPRGCAAELTLELQAFPRQALHAIRLGLNHPASGEAMVWEIPIAPDLEAL 311
Query: 249 ITF 251
+
Sbjct: 312 LDL 314
>gi|393718553|ref|ZP_10338480.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
echinoides ATCC 14820]
Length = 316
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/257 (38%), Positives = 152/257 (59%), Gaps = 19/257 (7%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
I+G ++ P N + I L++++ED+E+I+++K AGLVVHPA GN GTL +
Sbjct: 62 IAGGLYLVAVPAPTPSHNAAQD--IALNVVFEDDELIVIDKQAGLVVHPAAGNADGTLVN 119
Query: 63 NLLEIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
LL ++ V R GIVHR+DK++SGLMV AK+ +++ L Q H + R+Y A
Sbjct: 120 ALLHHCAGNLSGIGGVARPGIVHRIDKDTSGLMVAAKTDRAHEGLAKQFHDHSIDRRYKA 179
Query: 119 MVWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRC 177
+V G P G ++A + R+P NR K+ + K A+T++ T I + +L+ C
Sbjct: 180 IVSGQPAPPTGTVDAPLARSPSNRKKIAIVP--GGKRAVTHF----TTIERLQDAALVEC 233
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKN 231
L+TGRTHQ+RVHM LGH ++GD +YG+ ++L F RQALHA +LG IHP
Sbjct: 234 RLETGRTHQVRVHMASLGHPLLGDPVYGRTKQAHKATLETLGFRRQALHAARLGFIHPVT 293
Query: 232 NLKLKWRINLPDDISKL 248
+ L + +P D+ +L
Sbjct: 294 SNALAFDSEMPADMQEL 310
>gi|419801879|ref|ZP_14327082.1| pseudouridine synthase, RluA family [Haemophilus parainfluenzae
HK262]
gi|385192246|gb|EIF39652.1| pseudouridine synthase, RluA family [Haemophilus parainfluenzae
HK262]
Length = 324
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 143/241 (59%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGI
Sbjct: 74 NRFEPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHAT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRTLMAVHP--MGKPAVTHYRIME----NFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K SK+ F RQALHA L L HP ++W LPDD +L
Sbjct: 248 GDQTYGGRPRPPKNASKAFTEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVEL 307
Query: 249 I 249
+
Sbjct: 308 L 308
>gi|337748284|ref|YP_004642446.1| hypothetical protein KNP414_04043 [Paenibacillus mucilaginosus
KNP414]
gi|336299473|gb|AEI42576.1| YlyB [Paenibacillus mucilaginosus KNP414]
Length = 329
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 149/230 (64%), Gaps = 15/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRAGIVHRL 83
I LD++YED+++I++NK G+VVHPA G+ SGTL + LL + + + R GIVHR+
Sbjct: 102 IPLDVVYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLYHCKDLSGINGIMRPGIVHRI 161
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++ AK+ ++ L QLK H RKY+A+V G +P NG ++A I R+P +R
Sbjct: 162 DKDTSGLLMAAKNDLAHAGLTEQLKAHSATRKYIALVHGNVPHENGTVDAPIGRDPKDRK 221
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
TV++ N+K A+T++ ER +L+ L+TGRTHQIRVHM+++GH +V
Sbjct: 222 LYTVTEK-NSKHAVTHFIVLERFGD-------YTLLELKLETGRTHQIRVHMKFIGHPLV 273
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG SK + + QALHA LG HP+ +L + LP+D+++L+
Sbjct: 274 GDPQYGPSKSKGIPMDGQALHAAVLGFKHPRTGEELLFEAPLPEDMNRLL 323
>gi|365882282|ref|ZP_09421535.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 375]
gi|365289416|emb|CCD94066.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. ORS 375]
Length = 326
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 147/241 (60%), Gaps = 25/241 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L I+YED++II+++K AGLVVHPA G+ SGTL + L+ ++ V R GIVHR
Sbjct: 76 IPLTIVYEDDDIIVIDKPAGLVVHPAAGHESGTLVNALIAHCGASLSGIGGVKRPGIVHR 135
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMVVAK+ ++ L Q H ++R YLA WG+P + +G INA I R+
Sbjct: 136 LDKDTTGLMVVAKNDHAHASLSAQFADHGRTGAMERGYLAFAWGLPHRPHGTINAPIDRH 195
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PH R KM V + A+T+YE + G K SLI C+L+TGRTHQIRVH+ LG
Sbjct: 196 PHARDKMAVRPR--GREAITHYEVQESFVGRDGKPVASLIACHLETGRTHQIRVHLAHLG 253
Query: 196 HGIVGDNLYGKKY----------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + +++ + RQALHAY L + HP+ ++W LP+
Sbjct: 254 HPLMGDAVYGPHFKTKANQLAPGARAALESLGRQALHAYLLVIEHPRTGEIMRWESELPE 313
Query: 244 D 244
D
Sbjct: 314 D 314
>gi|297583963|ref|YP_003699743.1| RluA family pseudouridine synthase [Bacillus selenitireducens
MLS10]
gi|297142420|gb|ADH99177.1| pseudouridine synthase, RluA family [Bacillus selenitireducens
MLS10]
Length = 307
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 145/222 (65%), Gaps = 11/222 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRAGIVHRL 83
+ LDI+YED ++I++NK AG+VVHPA G+ SGTL + L+ + + V R GIVHR+
Sbjct: 76 LDLDIVYEDQDVIVVNKPAGMVVHPAPGHPSGTLVNGLMYHCQDLSGINGVARPGIVHRI 135
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK K++ LV+QLK R+Y A+V G IP G ++A I R+P +R
Sbjct: 136 DKDTSGLLMVAKHDKAHESLVDQLKNKTTIRQYEALVVGTIPHEKGTVDAPIGRDPQDRQ 195
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKH-ISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KMTV++ NA+ A+T+++ +I + + + + C L+TGRTHQIRVHM+++G+ IVGD
Sbjct: 196 KMTVTEE-NARDAVTHFQ-----VIERMNGYTHVLCELETGRTHQIRVHMKYIGYPIVGD 249
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
YG + QALHA LG +HP ++ + +P+
Sbjct: 250 PKYGPRKKHDFSIEGQALHARTLGFVHPVTGEQMTFEAEVPE 291
>gi|88857987|ref|ZP_01132629.1| pseudouridine synthase [Pseudoalteromonas tunicata D2]
gi|88819604|gb|EAR29417.1| pseudouridine synthase [Pseudoalteromonas tunicata D2]
Length = 325
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 146/250 (58%), Gaps = 23/250 (9%)
Query: 11 IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
I+P++ + E + I L+I+YED++I+++NK AGLVVHP GN GT+ + LL P
Sbjct: 71 IEPQREY-----EAQNIALNIVYEDDDILVINKPAGLVVHPGAGNADGTVLNALLHHCPE 125
Query: 71 LINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIPKLNGM 129
+ NVPRAGIVHRLDK+++GLMVVAK+I + LV L+ R+Y A+ G GM
Sbjct: 126 IANVPRAGIVHRLDKDTTGLMVVAKTIPAQTRLVANLQARYNFTREYEAICTGTMTAGGM 185
Query: 130 INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRV 189
I+ I R+ R M V+ KPA+T++ R+A + H L R L+TGRTHQIRV
Sbjct: 186 IDKPIGRHATKRTHMDVT--ITGKPAVTHF-RVAEKF--RSHTRL-RLRLETGRTHQIRV 239
Query: 190 HMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWR 238
HM +L H +VGD Y KK + L F RQALHA L + HP + W
Sbjct: 240 HMSYLTHPLVGDQSYNGRPRPPKKATPELFECLQKFRRQALHAVMLTIEHPITGEMMTWH 299
Query: 239 INLPDDISKL 248
+PDD+ L
Sbjct: 300 APIPDDMQYL 309
>gi|315498779|ref|YP_004087583.1| RluA family pseudouridine synthase [Asticcacaulis excentricus CB
48]
gi|315416791|gb|ADU13432.1| pseudouridine synthase, RluA family [Asticcacaulis excentricus CB
48]
Length = 334
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 144/258 (55%), Gaps = 18/258 (6%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
Y L + P E + + L+++YED +I++NK AG+ HPA G GTL + LL
Sbjct: 77 YRLFVPAPVSAI----PEAQNLPLEVLYEDAHLIVVNKPAGMAAHPAPGTADGTLVNALL 132
Query: 66 ----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
E + V R GIVHRLDK++SG+MV AKS ++ L H + R Y A+V
Sbjct: 133 FHCGESLSGIGGVLRPGIVHRLDKDTSGVMVAAKSDAAHRGLSELFSRHDIDRAYEALVR 192
Query: 122 GIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
G PK +G + I R+PH+R KM V K+ + A+++Y L + K + +RC L+
Sbjct: 193 GAPKTASGTVTTRIGRSPHDRKKMAVLKS-GGREAISHYRTLNSFGGEKPVAARVRCTLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYS--------KSLIFNRQALHAYKLGLIHPKNN 232
TGRTHQIRVHM +LG +GD +YG K+L F RQALHA LG +HP
Sbjct: 252 TGRTHQIRVHMAYLGCPCLGDPVYGSGAPHRAVAEALKTLSFARQALHAAHLGFVHPVTG 311
Query: 233 LKLKWRINLPDDISKLIT 250
+L + LP D++ L++
Sbjct: 312 ERLAFEAPLPADMADLLS 329
>gi|345428736|ref|YP_004821852.1| 23S rRNA pseudouridine synthase [Haemophilus parainfluenzae T3T1]
gi|301154795|emb|CBW14258.1| 23S rRNA pseudouridine synthase [Haemophilus parainfluenzae T3T1]
Length = 324
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 142/241 (58%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I L+I+YED++II++NK LVVHP GN GT+ + LL YP + VPRAGI
Sbjct: 74 NRFEPQNIPLNIVYEDDDIIVINKPKDLVVHPGAGNPDGTVLNALLYHYPPIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHAT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRTLMAVHP--MGKPAVTHYRIME----NFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K S++ F RQALHA L L HP ++W LPDD +L
Sbjct: 248 GDQTYGGRPRPPKNASEAFTEVLRNFKRQALHAVMLRLAHPITGETMEWYAPLPDDFVEL 307
Query: 249 I 249
+
Sbjct: 308 L 308
>gi|336124920|ref|YP_004566968.1| ribosomal large subunit pseudouridine synthase [Vibrio anguillarum
775]
gi|335342643|gb|AEH33926.1| Ribosomal large subunit pseudouridine synthase [Vibrio anguillarum
775]
Length = 324
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 142/234 (60%), Gaps = 17/234 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK VVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDDDIMVINKPRDFVVHPGAGTPDGTVLNALLFHYPAIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+V G GMI+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVRALQKRKITREYEAIVIGTMTAGGMIDKPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M VS KPA+T+Y R+A ++H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 LMAVSP--MGKPAVTHY-RVAEHF--REHTRL-RLRLETGRTHQIRVHMSYLQHPLLGDT 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
YG K ++ L F+RQALHA L L HP L++ +PDD+
Sbjct: 252 AYGGRARIPKGATQELTDMIRGFDRQALHAVMLRLEHPVTGEMLEFHAPVPDDM 305
>gi|145631295|ref|ZP_01787067.1| SfhB [Haemophilus influenzae R3021]
gi|144983080|gb|EDJ90580.1| SfhB [Haemophilus influenzae R3021]
Length = 324
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP ++ VPRAGI
Sbjct: 74 TRFEAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHAT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
RI M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRILMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 248 GDQTYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVEL 307
Query: 249 I 249
+
Sbjct: 308 L 308
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 144/229 (62%), Gaps = 10/229 (4%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVH 81
+ I LDI+YED +II++NK G+VVHPA GN GTL + LL L IN V R GIVH
Sbjct: 81 EAISLDILYEDEDIIVINKPRGMVVHPAAGNYEGTLVNALLRHCDRLSGINGVSRPGIVH 140
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHN 140
RLDK++SG+M+VAK+ ++++ L Q+K RKY+A+V G K N G+INA I R+P +
Sbjct: 141 RLDKDTSGVMMVAKTDRAHLDLARQIKERTAGRKYVAIVHGNIKENQGIINAPIGRHPTD 200
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
R KM V N+K A+T ++ L +L+ C L TGRTHQIRVHM ++GH +VG
Sbjct: 201 RKKMAVVFT-NSKEAITTFQVLE----RFGDYTLVECRLFTGRTHQIRVHMAYIGHPVVG 255
Query: 201 DNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
D YG + I QALHA +L HP ++ + + LPDD+ ++
Sbjct: 256 DPKYGPGRQRFAIMG-QALHAAELTFQHPVTGERMSFTVPLPDDMRAIL 303
>gi|417854570|ref|ZP_12499859.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338217690|gb|EGP03532.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 324
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+I + LV L+ + R+Y A+ GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMVDQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP ++W LP D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMQTLRDFKRQALHAIMLRLAHPITGELMEWHAPLPTDF 304
Query: 246 SKLI 249
+L+
Sbjct: 305 VELV 308
>gi|148653370|ref|YP_001280463.1| RluA family pseudouridine synthase [Psychrobacter sp. PRwf-1]
gi|148572454|gb|ABQ94513.1| ribosomal large subunit pseudouridine synthase D [Psychrobacter sp.
PRwf-1]
Length = 420
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 147/240 (61%), Gaps = 19/240 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + IKLDIIYED+ +I++NK G+VVHP GN SGTL + LL YP ++PRAG+VHR
Sbjct: 175 QPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHLPRAGLVHR 234
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL--NGMINAAIMRNPH 139
+DKN+SGL+V+ K+ + + L QLK V R Y +V G P L I+A I R+
Sbjct: 235 IDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTIDAPIGRHRT 294
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R KMTV+ K A+T+ ++ T + + SL+ L+TGRTHQIRVH+ +GH I+
Sbjct: 295 QRTKMTVTS--TGKTAITHIMKI-TPLSDT--YSLLDVRLETGRTHQIRVHLSHIGHPII 349
Query: 200 GDNLYGKKY---------SKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD++YG + + I F RQALHAYKLG IHP+ ++ LP DI +L
Sbjct: 350 GDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLPQDIVEL 409
>gi|260593408|ref|ZP_05858866.1| ribosomal large subunit pseudouridine synthase D [Prevotella
veroralis F0319]
gi|260534684|gb|EEX17301.1| ribosomal large subunit pseudouridine synthase D [Prevotella
veroralis F0319]
Length = 366
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 154/274 (56%), Gaps = 39/274 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LDI+YEDN ++++NK AGLVVHP GN GTL + +
Sbjct: 94 LMLDRPKHD---NTIEAEDIPLDIVYEDNALMVVNKPAGLVVHPGAGNFHGTLINAIAWH 150
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L ++ F N P G+VHR+DK++SGL+V+AK+ + L Q R Y A+VWG
Sbjct: 151 LKDLPSFDPNDPEVGLVHRIDKDTSGLLVIAKTPDAKTILGKQFFNKTTHRSYNALVWGN 210
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
+ G I I R+P +R++MTV + KPA+T+Y ER + +LI C
Sbjct: 211 LTADEGRIEGNIARDPKDRLRMTVFPPDSEIGKPAVTHYRVLERFG-------YTTLIEC 263
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLY-------GKKYSKSLIF--------NRQALHAY 222
L+TGRTHQIR HM+ +GH + GD Y G++ S F NRQALHA
Sbjct: 264 VLETGRTHQIRAHMKHIGHPLFGDERYGGTEILRGQRSSSYKAFIRNCLTLCNRQALHAR 323
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
LG +HP ++ + +LP D++ LIT KW
Sbjct: 324 TLGFVHPVTGQQMDFTSDLPQDLASLIT----KW 353
>gi|386835606|ref|YP_006240925.1| ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida subsp. multocida str. 3480]
gi|385202311|gb|AFI47166.1| ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida subsp. multocida str. 3480]
Length = 324
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+I + LV L+ + R+Y A+ GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMVDQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP ++W LP D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMQTLRDFKRQALHAIMLRLAHPITGELMEWHAPLPTDF 304
Query: 246 SKLI 249
+L+
Sbjct: 305 VELV 308
>gi|152977723|ref|YP_001343352.1| 23S rRNA pseudouridine synthase D [Actinobacillus succinogenes
130Z]
gi|150839446|gb|ABR73417.1| pseudouridine synthase, RluA family [Actinobacillus succinogenes
130Z]
Length = 324
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 142/239 (59%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + + LDI+YED+ I++LNK VVHP GN GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENLPLDIVYEDDHILVLNKPKNFVVHPGAGNPRGTVLNALLYHYPQIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ +G+ G ++ + R+P R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVAFGVMTKGGKVDEPMARHPTKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y R+ N + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 AMAVHP--MGKPAVTHY-RIMEHFRN---YTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYGKK----------YSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG + +S+ L F RQALHA L L HP + ++W LPDD ++LI
Sbjct: 251 TYGGRPRPPRNASEHFSEVLRNFQRQALHAIMLRLEHPISGGLMEWFAPLPDDFAELIA 309
>gi|18310832|ref|NP_562766.1| hypothetical protein CPE1850 [Clostridium perfringens str. 13]
gi|110801362|ref|YP_696533.1| RluA family pseudouridine synthase [Clostridium perfringens ATCC
13124]
gi|168206096|ref|ZP_02632101.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|168210787|ref|ZP_02636412.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|422346519|ref|ZP_16427433.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|422874769|ref|ZP_16921254.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
gi|18145514|dbj|BAB81556.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110676009|gb|ABG84996.1| pseudouridine synthase, RluA family [Clostridium perfringens ATCC
13124]
gi|170662443|gb|EDT15126.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170711120|gb|EDT23302.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|373226064|gb|EHP48391.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|380304410|gb|EIA16699.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
Length = 306
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 10/233 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRA 77
K E + I L+I+YED ++I++NK G+VVHPA GN +GTL + LL L IN V R
Sbjct: 74 KVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHCDDLSGINGVIRP 133
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR 136
GIVHR+DK++SG++VVAK+ ++ L Q K H ++R+Y A+V G K G I+A + R
Sbjct: 134 GIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR 193
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ +R+K V K+ K A+T+YE L + N SL++C L+TGRTHQIRVHM ++GH
Sbjct: 194 HHRDRLKYAVVKD--GKRAVTHYEVLK--VFNS--CSLVKCTLETGRTHQIRVHMAFIGH 247
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG K K L Q LHA LG IHP +++ LP+ K++
Sbjct: 248 PLLGDTVYGLKKQKKLSQEGQVLHAKTLGFIHPTTGEYVEFDSELPEYFEKIV 300
>gi|317121731|ref|YP_004101734.1| ribosomal large subunit pseudouridine synthase D [Thermaerobacter
marianensis DSM 12885]
gi|315591711|gb|ADU51007.1| ribosomal large subunit pseudouridine synthase D [Thermaerobacter
marianensis DSM 12885]
Length = 321
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 12/231 (5%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV--P-RAGIVH 81
+ + LD++YED ++++LNK G VVHPA G+ GTL + LL YP + V P R GIVH
Sbjct: 88 EPLPLDVVYEDADVVVLNKPRGWVVHPAPGHPQGTLANALLARYPEMEGVGGPGRPGIVH 147
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHN 140
RLD++++GL+VVA+S +Y LV QLK V R+YLA+V G P++ G ++A I R+P +
Sbjct: 148 RLDRDTTGLLVVARSPLAYRELVRQLKERGVHREYLALVRGSPEVREGTVDAPIGRHPVD 207
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKK-HISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R +M V +PA T++E ++ + +L+RC L TGRTHQIRVH+ ++G +
Sbjct: 208 RKRMAVLPG-GGRPARTHFE-----VVERAGRYTLLRCWLDTGRTHQIRVHLAFIGLPVA 261
Query: 200 GDNLY-GKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD +Y G++ L QALHA +L HP++ + + + P D + +
Sbjct: 262 GDPVYGGRRAEGELGLEGQALHATRLAFPHPRDGRPMDFTVPPPADFQRAL 312
>gi|407783254|ref|ZP_11130457.1| pseudouridylate synthase, 23S RNA-specific [Oceanibaculum indicum
P24]
gi|407202434|gb|EKE72425.1| pseudouridylate synthase, 23S RNA-specific [Oceanibaculum indicum
P24]
Length = 336
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 148/246 (60%), Gaps = 22/246 (8%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPR 76
+ + + I L ++YED+++I+++K AG+VVHPA GN TL + LL + + V R
Sbjct: 85 EPDAQDIPLVVVYEDDDLIVIDKPAGMVVHPAPGNPDSTLVNALLAHCGDSLSGIGGVRR 144
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIM 135
GIVHR+DK++SGL+V AK+ ++ L Q H + R YLA+VWG+P G I I
Sbjct: 145 PGIVHRIDKDTSGLLVAAKNDLAHAALTEQFAAHSIDRAYLALVWGVPVPPAGEIAGNIG 204
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLAT-GIINKKHISLIRCNLKTGRTHQIRVHMQWL 194
R+ +R KM V + K ALT Y L GI+ SL+ C L+TGRTHQIRVHM L
Sbjct: 205 RSNRDRKKMAVVGS-GGKHALTRYRTLGRHGIL----ASLVECRLETGRTHQIRVHMASL 259
Query: 195 GHGIVGDNLYGKKYSKSL-----------IFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
GH +VGD YG + +++ F RQALHA +LG +HP++ +L ++ LP+
Sbjct: 260 GHPLVGDATYGGRRTRNTGSNDPVKAALSGFPRQALHARELGFLHPRSGKRLLFQSALPN 319
Query: 244 DISKLI 249
DI +L+
Sbjct: 320 DIQELL 325
>gi|15603584|ref|NP_246658.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. Pm70]
gi|20139708|sp|Q9CKA6.1|RLUD_PASMU RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|12722131|gb|AAK03803.1| SfB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 324
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+I + LV L+ + R+Y A+ GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMVDQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP ++W LP D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMQTLRDFKRQALHAIMLRLAHPITGELMEWHAPLPTDF 304
Query: 246 SKLI 249
+L+
Sbjct: 305 VELV 308
>gi|403530188|ref|YP_006664717.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
gi|403232260|gb|AFR26003.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
Length = 334
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 154/255 (60%), Gaps = 26/255 (10%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPR 76
K + IKLDI++ED+ +I++NK AGLVVHP GNL+GTL + L+ + + V R
Sbjct: 73 KPSGEAIKLDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNALIYHCGDSLSGIGGVKR 132
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMIN 131
GIVHRLDKN++G+MVVAK+ ++ +L Q H + R+Y A++WG P N I+
Sbjct: 133 PGIVHRLDKNTTGIMVVAKNDLAHKNLSAQFSDHGRTSALDRRYHALIWGSPNRNVWKID 192
Query: 132 AAIMRNPHNRIKMTV--SKNFNAKPALTYYERLAT-GIINKK--HISLIRCNLKTGRTHQ 186
A + R+PHNR K V S+N +A+ A+T++ L GI + K SL+ C L+TGRTHQ
Sbjct: 193 APLGRSPHNRTKQAVIYSQNPHARHAVTHFSLLEKYGICSDKTSFASLLECRLETGRTHQ 252
Query: 187 IRVHMQWLGHGIVGDNLYGKKYS------KSLI------FNRQALHAYKLGLIHPKNNLK 234
IRVHM +GH +VGD +YG K +I FNRQALHA L HP
Sbjct: 253 IRVHMAHIGHPLVGDTVYGNACKTKSNMLKPIIKNAIDQFNRQALHAASLTFEHPATGKI 312
Query: 235 LKWRINLPDDISKLI 249
+ + +P D+++LI
Sbjct: 313 MSFSSPIPQDMAELI 327
>gi|357044193|ref|ZP_09105877.1| hypothetical protein HMPREF9138_02349 [Prevotella histicola F0411]
gi|355367743|gb|EHG15171.1| hypothetical protein HMPREF9138_02349 [Prevotella histicola F0411]
Length = 363
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 152/274 (55%), Gaps = 39/274 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LDI+YED ++++NK AGLVVHP GN GTL + +
Sbjct: 92 LMLDRPKHD---NTIEAEDIPLDIVYEDEVLMVINKPAGLVVHPGAGNFHGTLINAIAWH 148
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L +I F N P G+VHR+DK++SGL+V+AK+ + L Q R Y A+VWG
Sbjct: 149 LKDIPEFDANDPEVGLVHRIDKDTSGLLVIAKTPDAKTSLGKQFFNKTTHRSYNALVWGN 208
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
+ G I I R+P +R++MTV + KPA+T+Y ER + +LI C
Sbjct: 209 FTEEEGRIEGNIARDPKDRLRMTVFPPGSETGKPAVTHYRVIERFG-------YTTLIEC 261
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY---------SKSLIFN------RQALHAY 222
L+TGRTHQIR HM+ +GH + GD YG + K+ I N RQALHA
Sbjct: 262 ILETGRTHQIRAHMKHIGHPLFGDERYGGREILRGQRSSTYKAFIHNCLTLCDRQALHAR 321
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
LG +HP ++ + +LP D+S LI KW
Sbjct: 322 TLGFVHPVTGEQMDFTSDLPADLSALIE----KW 351
>gi|410622641|ref|ZP_11333472.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410157834|dbj|GAC28846.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 351
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 154/257 (59%), Gaps = 19/257 (7%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
SG E++I ++ +E + + L ++YED I++++K AGLVVHP GN GTL +
Sbjct: 89 SGEEIVI--GAEHEVQVTSEPQHMDLSVVYEDEHILVIDKQAGLVVHPGAGNHDGTLLNA 146
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
LL P + VPRAGIVHRLDK+++GLMVVAK++ + +LV QL+ + R+Y A+V G
Sbjct: 147 LLAKVPSIDQVPRAGIVHRLDKDTTGLMVVAKTLPAQTNLVEQLQARTMGREYEALVMGT 206
Query: 124 PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
G ++ I R+ R M V + KPA+T+Y R+ + + +R L++GR
Sbjct: 207 MIAGGFVDQPIARHATKRTAMAVRE--GGKPAVTHY-RVKEKF---RAYTYLRLKLESGR 260
Query: 184 THQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNN 232
THQIRVHM + H +VGD LYG K S++ I F RQALHA +L L+HP +
Sbjct: 261 THQIRVHMSHINHPLVGDALYGGRPRLPKHASENFISALRGFKRQALHAAQLTLLHPISG 320
Query: 233 LKLKWRINLPDDISKLI 249
++ ++ +P+D L+
Sbjct: 321 EEMTFKAPIPEDFVTLL 337
>gi|343518248|ref|ZP_08755242.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
pittmaniae HK 85]
gi|343394044|gb|EGV06594.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
pittmaniae HK 85]
Length = 324
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 142/241 (58%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I LDI+YED++I+++NK LVVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 NRFEAQNIPLDIVYEDDDILVINKPKDLVVHPGAGNPSGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G + + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRDLQKRKITREYEAVASGIMTKGGTVEQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + + ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRTLMAVHP--LGKPAVTHYRVME----HFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K + + F RQALHA L L HP + ++W LP D +L
Sbjct: 248 GDQTYGGRPRPPKDADEQFLTVLRNFKRQALHAVMLRLHHPISGELMEWYAPLPADFVEL 307
Query: 249 I 249
I
Sbjct: 308 I 308
>gi|75676616|ref|YP_319037.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74421486|gb|ABA05685.1| ribosomal large subunit pseudouridine synthase D [Nitrobacter
winogradskyi Nb-255]
Length = 351
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 148/251 (58%), Gaps = 25/251 (9%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPR 76
K + + I LDIIYED+++I++NK GLVVHPA G+ +GTL + L+ E + V R
Sbjct: 95 KPQGEAIALDIIYEDDDLIVINKPKGLVVHPAAGHHTGTLVNALIAHCGETLSGIGGVCR 154
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMIN 131
GIVHRLDK+++GLMV AK+ ++ L Q H ++R YLA VWG+P + +G ++
Sbjct: 155 PGIVHRLDKDTTGLMVAAKNDAAHKSLGAQFADHGRTGAMRRGYLAFVWGLPNRSHGTVD 214
Query: 132 AAIMRNPHNRIKMTVSKNFNAKPALTYYE-RLA-TGIINKKHISLIRCNLKTGRTHQIRV 189
A I R+P+ R KM V + A+T++E R A G K +L+ C L TGRTHQIRV
Sbjct: 215 APIDRHPYAREKMAV--RAGGREAITHWEVRQAFNGRDGKPVAALLACQLATGRTHQIRV 272
Query: 190 HMQWLGHGIVGDNLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKW 237
H+ +GH ++GD +YG + + RQALHA L L HP+ L+W
Sbjct: 273 HLAHVGHPLMGDGVYGPHFRTKVSHLGERAAAALSALGRQALHASLLVLEHPRTEKVLRW 332
Query: 238 RINLPDDISKL 248
LP+D+S L
Sbjct: 333 ETGLPEDLSSL 343
>gi|383810375|ref|ZP_09965871.1| pseudouridine synthase, RluA family [Prevotella sp. oral taxon 306
str. F0472]
gi|383357120|gb|EID34608.1| pseudouridine synthase, RluA family [Prevotella sp. oral taxon 306
str. F0472]
Length = 365
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 154/274 (56%), Gaps = 39/274 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LDI+YEDN ++++NK AGLVVHP GN GTL + +
Sbjct: 93 LMLDRPKHD---NTIEAEDIPLDIVYEDNALMVVNKPAGLVVHPGAGNFHGTLINAIAWH 149
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L ++ F N P G+VHR+DK++SGL+V+AK+ + L Q R Y A+VWG
Sbjct: 150 LKDLPSFDPNDPEVGLVHRIDKDTSGLLVIAKTPDAKTILGKQFFNKTTHRSYNALVWGN 209
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
+ G I I R+P +R++MTV + KPA+T+Y ER + +LI C
Sbjct: 210 LTADEGRIEGNIARDPKDRLRMTVFPPDSEIGKPAVTHYRVLERFG-------YTTLIEC 262
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLY-------GKKYSKSLIF--------NRQALHAY 222
L+TGRTHQIR HM+ +GH + GD Y G++ S F NRQALHA
Sbjct: 263 ILETGRTHQIRAHMKHIGHPLFGDERYGGTEILRGQRSSSYKAFIRNCLTLCNRQALHAR 322
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
LG +HP ++ + +LP D++ LIT KW
Sbjct: 323 TLGFVHPVTGQQMDFTSDLPQDLASLIT----KW 352
>gi|418531071|ref|ZP_13096990.1| pseudouridine synthase [Comamonas testosteroni ATCC 11996]
gi|371451780|gb|EHN64813.1| pseudouridine synthase [Comamonas testosteroni ATCC 11996]
Length = 352
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 143/240 (59%), Gaps = 14/240 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L ++YED +++++NK AGLVVHPA GN +GTL + LL VPRAGIVHR
Sbjct: 115 QPEAMDLQVVYEDEDLLVINKPAGLVVHPAPGNWTGTLLNGLLARDEKARQVPRAGIVHR 174
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---WGIPKLNGMINAAIMRNPH 139
LDK++SGLMVVA++ + L+ + V R+YLA+ WG K ++A I R+P
Sbjct: 175 LDKDTSGLMVVARNRSTMDALIKMIAARDVSRQYLALAHKQWGSRKRR-EVDAPIGRDPR 233
Query: 140 NRIKMTVSKNFNAKP---ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
NR++M V + N P A T ++ L + SL+RC L TGRTHQIRVHM LGH
Sbjct: 234 NRLRMAVV-DLNLHPGKQARTDFDLLDGDTAH----SLVRCTLHTGRTHQIRVHMASLGH 288
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
++GD LYG + L RQALHA++L HP L LP D++ + G+++
Sbjct: 289 PLIGDTLYGGQPEGGL--ERQALHAFRLAFEHPVTKKPLVHYAPLPQDMAGALDLWGLRY 346
>gi|110803816|ref|YP_699133.1| pseudouridine synthase [Clostridium perfringens SM101]
gi|110684317|gb|ABG87687.1| pseudouridine synthase, RluA family [Clostridium perfringens SM101]
Length = 306
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 147/233 (63%), Gaps = 10/233 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRA 77
K E + I L+IIYED ++I++NK G+VVHPA GN +GTL + LL + + V R
Sbjct: 74 KVEAEDIPLNIIYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLYHCDDLSGINGVIRP 133
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR 136
GIVHR+DK++SG++VVAK+ ++ L Q K H ++R+Y A+V G K G I+A + R
Sbjct: 134 GIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR 193
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ +R+K V K+ K A+T+YE L + N SL++C L+TGRTHQIRVHM ++GH
Sbjct: 194 HHRDRLKYAVVKD--GKRAVTHYEVLK--VFNS--CSLVKCTLETGRTHQIRVHMAFIGH 247
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG K K L Q LHA LG IHP +++ LP+ K++
Sbjct: 248 PLLGDTVYGLKKQKKLSQEGQVLHAKTLGFIHPTTGKYVEFDSELPEYFEKIV 300
>gi|423204380|ref|ZP_17190936.1| RluA family pseudouridine synthase [Aeromonas veronii AMC34]
gi|404627245|gb|EKB24050.1| RluA family pseudouridine synthase [Aeromonas veronii AMC34]
Length = 326
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I+L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 DAQDIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPGIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G ++A I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPTQRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V N +P++T+Y +++K H L R L+TGRTHQIRVHM + H +V
Sbjct: 198 HMAVVP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMAHIKHPLV 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG + + L FNRQALHA L L HP ++W P D+ +L
Sbjct: 249 GDPAYGGRLRPLRNATPELTLALRNFNRQALHATMLQLAHPITGEVMQWHSATPQDMVEL 308
Query: 249 I 249
+
Sbjct: 309 M 309
>gi|383758616|ref|YP_005437601.1| ribosomal large subunit pseudouridine synthase D RluD [Rubrivivax
gelatinosus IL144]
gi|381379285|dbj|BAL96102.1| ribosomal large subunit pseudouridine synthase D RluD [Rubrivivax
gelatinosus IL144]
Length = 317
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 140/240 (58%), Gaps = 14/240 (5%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
EL+ + F + + L I+YED +++L+K AGLVVHPA GN SGTL + LL
Sbjct: 78 ELVPTDESRAF-----RPQPMALSILYEDEHLLVLDKPAGLVVHPAPGNWSGTLLNGLLA 132
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
+ +PRAGIVHRLDK++SG+M+V KS+ + LV + V R+YLA+ G
Sbjct: 133 HHAAASTLPRAGIVHRLDKDTSGVMMVGKSLPAVTALVRDIAARDVHRRYLALAQGAVAT 192
Query: 127 NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
I+A I R+P +R++M V + KPA T E LA + +S +RC L TGRTHQ
Sbjct: 193 Q-RIDAPIGRDPVSRVRMAVVA--SGKPARTDVECLA----QHEGLSAVRCTLHTGRTHQ 245
Query: 187 IRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
IRVH+ GH +V D +YG + + ++ RQALHA +L L HP L + P+D S
Sbjct: 246 IRVHLASRGHPLVADAVYGGRPALGMV--RQALHAVRLELEHPVTRAPLSFGCPPPEDFS 303
>gi|168215478|ref|ZP_02641103.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
gi|182382386|gb|EDT79865.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
Length = 306
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 147/233 (63%), Gaps = 10/233 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRA 77
K E + I L+I+YED ++I++NK G+VVHPA GN +GTL + LL + + V R
Sbjct: 74 KVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLYHCDDLSGINGVIRP 133
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR 136
GIVHR+DK++SG++VVAK+ ++ L Q K H ++R+Y A+V G K G I+A + R
Sbjct: 134 GIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR 193
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ +R+K V K+ K A+T+YE L + N SL++C L+TGRTHQIRVHM ++GH
Sbjct: 194 HHRDRLKYAVVKD--GKRAVTHYEVLK--VFNS--CSLVKCTLETGRTHQIRVHMAFIGH 247
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG K K L Q LHA LG IHP +++ LP+ K++
Sbjct: 248 PLLGDTVYGLKKQKKLSQEGQVLHAKTLGFIHPTTGEYVEFDSELPEYFEKIV 300
>gi|85707640|ref|ZP_01038706.1| pseudouridine synthase D large subunit [Erythrobacter sp. NAP1]
gi|85689174|gb|EAQ29177.1| pseudouridine synthase D large subunit [Erythrobacter sp. NAP1]
Length = 317
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 150/247 (60%), Gaps = 17/247 (6%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPR 76
+ + + I LD+ +ED ++I++NK AG+VVHPA GN GTL + LL ++ V R
Sbjct: 72 EAQAQDIALDVAFEDEDLIVVNKPAGMVVHPAAGNPDGTLVNALLHHCRGQLSGIGGVAR 131
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIM 135
GIVHR+DK++SGL+VVAKS ++ L Q H V R+YLA+ G P G IN +
Sbjct: 132 PGIVHRIDKDTSGLLVVAKSDAAHEGLAAQFAEHSVHRRYLAVCGGHPSPAEGTINERLG 191
Query: 136 RNPHNRIKMTV-SKNFN-AKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
R+ NR KM V KN + K A+T+Y+ L I +LI C L+TGRTHQ+RVH
Sbjct: 192 RSDANRKKMAVLPKNSSRGKHAITHYKVLKP--IGAA--ALIECRLETGRTHQVRVHCAS 247
Query: 194 LGHGIVGDNLYGK--KYSKSLI----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
+GH ++GD +YG+ K K L+ F RQALHA +LG IHP +L++ +LP D+ +
Sbjct: 248 IGHALLGDPIYGRTPKVLKPLLSQLKFARQALHAAELGFIHPILGSELRFSADLPADMQE 307
Query: 248 LITFSGI 254
LI G
Sbjct: 308 LIDELGC 314
>gi|161510965|ref|YP_089013.2| 23S rRNA pseudouridine synthase D [Mannheimia succiniciproducens
MBEL55E]
Length = 324
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I L+I+YED++I+++NK VVHP GN +GT+ + LL YP + VPRAGI
Sbjct: 74 NRFEPQNIPLNIVYEDDDILVINKPKDFVVHPGAGNPNGTVLNALLYHYPQITEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ +GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRALQKRKITREYEAIAFGIMTKGGTVDEPMSRHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + + ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRTLMAVHP--MGKPAVTHYRVME----HFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K S+ + F RQALHA L L HP ++W LP+D +L
Sbjct: 248 GDQTYGGRPRPPKNASEEFMSVLRNFQRQALHAIMLRLEHPITGELMEWHAPLPEDFVEL 307
Query: 249 I 249
+
Sbjct: 308 V 308
>gi|406675301|ref|ZP_11082490.1| RluA family pseudouridine synthase [Aeromonas veronii AMC35]
gi|404627633|gb|EKB24433.1| RluA family pseudouridine synthase [Aeromonas veronii AMC35]
Length = 326
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 144/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I+L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 DAQDIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPGIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G ++A I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPTQRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V N +P++T+Y +++K H L R L+TGRTHQIRVHM + H +V
Sbjct: 198 HMAVVP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMAHIKHPLV 248
Query: 200 GDNLYG----------KKYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG + +++L FNRQALHA L L HP ++W P D+ +L
Sbjct: 249 GDPAYGGRLRPLRNATPELTQALRNFNRQALHATMLQLAHPITGEVMQWHSATPQDMVEL 308
Query: 249 I 249
+
Sbjct: 309 M 309
>gi|15889714|ref|NP_355395.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Agrobacterium fabrum str. C58]
gi|15157624|gb|AAK88180.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Agrobacterium fabrum str. C58]
Length = 340
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 160/277 (57%), Gaps = 39/277 (14%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G + I+ P+ + + E I LD+ YED ++I+L K AGLVVHP GN +GTL + L
Sbjct: 68 GDRVEIVMPEPEDPVPQGED--IPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNAL 125
Query: 65 L----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKY 116
+ + + V R GIVHRLDK +SG+MVVAK+ ++ HL Q H ++R Y
Sbjct: 126 IYHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAY 185
Query: 117 LAMVWGIPK-LNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYYERLATGIINKKH-- 171
A+VWG P+ L G ++AA+ R +R K V +F+A+ A+T+YE ++ + H
Sbjct: 186 KAVVWGRPRTLRGTVDAALGRG-TDRTKRAVKNEDSFDAREAITHYE-----VMERFHEK 239
Query: 172 ------ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI-- 213
S++ C L+TGRTHQIRVHM +GH ++GD YG + ++S +
Sbjct: 240 PDASCLASMVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFRTKANLLDEPARSTVNR 299
Query: 214 FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
F RQALHAY L HP+ +++ ++P+D+ +L+T
Sbjct: 300 FPRQALHAYLLAFEHPRTGEVMEFETDMPEDMEELVT 336
>gi|378775631|ref|YP_005177874.1| ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida 36950]
gi|383311713|ref|YP_005364523.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. HN06]
gi|421264490|ref|ZP_15715469.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425064439|ref|ZP_18467564.1| Ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida subsp. gallicida X73]
gi|425066596|ref|ZP_18469716.1| Ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida subsp. gallicida P1059]
gi|356598179|gb|AET16905.1| ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida 36950]
gi|380872985|gb|AFF25352.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. HN06]
gi|401688149|gb|EJS83799.1| 23S rRNA pseudouridine synthase D [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404381189|gb|EJZ77672.1| Ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida subsp. gallicida X73]
gi|404381384|gb|EJZ77861.1| Ribosomal large subunit pseudouridine synthase D [Pasteurella
multocida subsp. gallicida P1059]
Length = 324
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+I + LV L+ + R+Y A+ GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMVDQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP ++W LP D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMQTLRDFKRQALHAIMLRLEHPITGELMEWHAPLPTDF 304
Query: 246 SKLI 249
+L+
Sbjct: 305 VELV 308
>gi|52307928|gb|AAU38428.1| RluA protein [Mannheimia succiniciproducens MBEL55E]
Length = 327
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N+ E + I L+I+YED++I+++NK VVHP GN +GT+ + LL YP + VPRAGI
Sbjct: 77 NRFEPQNIPLNIVYEDDDILVINKPKDFVVHPGAGNPNGTVLNALLYHYPQITEVPRAGI 136
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ +GI G ++ + R+P
Sbjct: 137 VHRLDKDTTGLMVVAKTIPAQTQLVRALQKRKITREYEAIAFGIMTKGGTVDEPMSRHPT 196
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + + ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 197 KRTLMAVHP--MGKPAVTHYRVME----HFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 250
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K S+ + F RQALHA L L HP ++W LP+D +L
Sbjct: 251 GDQTYGGRPRPPKNASEEFMSVLRNFQRQALHAIMLRLEHPITGELMEWHAPLPEDFVEL 310
Query: 249 I 249
+
Sbjct: 311 V 311
>gi|182625703|ref|ZP_02953472.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
gi|177909105|gb|EDT71580.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
Length = 306
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 10/233 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRA 77
K E + I L+I+YED ++I++NK G+VVHPA GN +GTL + LL L IN V R
Sbjct: 74 KVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHCDDLSGINGVIRP 133
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR 136
GIVHR+DK++SG++VVAK+ ++ L Q K H ++R+Y A+V G K G I+A + R
Sbjct: 134 GIVHRIDKDTSGILVVAKNDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGR 193
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ +R+K V K+ K A+T+YE L + N SL++C L+TGRTHQIRVHM ++GH
Sbjct: 194 HHRDRLKYAVVKD--GKRAVTHYEVLK--VFNS--CSLVKCTLETGRTHQIRVHMAFIGH 247
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
++GD +YG K K L Q LHA LG IHP +++ LP+ K++
Sbjct: 248 PLLGDTVYGLKKQKKLSQEGQVLHAKTLGFIHPTTGEYVEFDSELPEYFKKIV 300
>gi|365858615|ref|ZP_09398538.1| putative ribosomal large subunit pseudouridine synthase D
[Acetobacteraceae bacterium AT-5844]
gi|363713926|gb|EHL97486.1| putative ribosomal large subunit pseudouridine synthase D
[Acetobacteraceae bacterium AT-5844]
Length = 343
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 142/247 (57%), Gaps = 22/247 (8%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAG 78
+ + I L +++ED ++I+L+K AGLVVHPA GN GTL + LL + + R G
Sbjct: 95 QAQDIPLTVLFEDRQLIVLDKPAGLVVHPAPGNEDGTLVNALLAHAGDELAGIGGEKRPG 154
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIP-KLNGMINAAIMR 136
IVHRLDK++SG+MVVAK+ +++ L ++R YLA+ WG+P L G I A I R
Sbjct: 155 IVHRLDKDTSGVMVVAKTERAHQTLSATFASRENLERSYLALTWGVPTSLTGEIEAPIGR 214
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+P +R +M V N K ALT Y +T +LIRC L TGRTHQIRVH+ +GH
Sbjct: 215 HPTDRKRMAVVAR-NGKDALTRY---STERAWGTACALIRCRLATGRTHQIRVHLSHIGH 270
Query: 197 GIVGDNLYGKKYSKS------------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
IVGD +Y K+ L F RQALHA LG +HP KL++ LP D
Sbjct: 271 PIVGDPVYLKRIPAGARGLPTSARDALLAFPRQALHAESLGFLHPVTGEKLRFSAPLPQD 330
Query: 245 ISKLITF 251
+LIT
Sbjct: 331 FVQLITL 337
>gi|238897770|ref|YP_002923449.1| pseudouridine synthase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465527|gb|ACQ67301.1| pseudouridine synthase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 325
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 143/235 (60%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+IIYED +I+++NK +GLVVHP GN T+ + LL+ YP + +VPRAGIVHRLDK+
Sbjct: 82 IPLNIIYEDTDILVINKPSGLVVHPGAGNPDHTILNALLDYYPDITHVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMV+AK++++ LV+ L+ +V R+Y A+ G G IN I R+ R M V
Sbjct: 142 TTGLMVIAKTLRAQTSLVDALQARLVTREYEAIAVGHITAGGSINEPIARHKSKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+T+Y L + H L R L+TGRTHQIRVH ++ H +VGD LYG+
Sbjct: 202 --HPLGKSAVTHYRILQH---FRAHTRL-RLRLETGRTHQIRVHFSYIHHPLVGDPLYGR 255
Query: 207 KYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+ + F RQALHA L L HP ++++W +LP D+ LI+
Sbjct: 256 RLRQPKGALEKLIETLSAFKRQALHATMLRLHHPITQIEMEWHADLPQDMLDLIS 310
>gi|410479981|ref|YP_006767618.1| 23S RNA-specific pseudouridylate synthase [Leptospirillum
ferriphilum ML-04]
gi|406775233|gb|AFS54658.1| pseudouridylate synthase, 23S RNA-specific [Leptospirillum
ferriphilum ML-04]
Length = 339
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 154/253 (60%), Gaps = 24/253 (9%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
++I P ++ + + I+L+I+YED ++I+++K GLVVHPA G+ SGTL + LL +
Sbjct: 78 VLIPPPRS---QTAQPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHF 134
Query: 69 PFLINVP---------------RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113
+ RAG+VHRLD+++SG+MVV K+ + L+NQ K V
Sbjct: 135 QSQGDEQKKGEPEEDEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVS 194
Query: 114 RKYLAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI 172
+KYLA+V GI PK G INA I R+ H+R K TV ++ KP++T Y L T ++
Sbjct: 195 KKYLALVKGILPKKRGEINAPIGRSTHDRKKFTVRQD--GKPSVTRYRVLET---YHENY 249
Query: 173 SLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNN 232
SL+ L TGRTHQIRVH ++LG ++GD +YG K +++ F RQ LHA+KL HP +N
Sbjct: 250 SLLEVTLLTGRTHQIRVHFRYLGFPLLGDAVYGSKGTENKNFPRQMLHAWKLSFQHPSSN 309
Query: 233 LKLKWRINLPDDI 245
K+++ LP D
Sbjct: 310 SKMEFEAPLPPDF 322
>gi|163786072|ref|ZP_02180520.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriales
bacterium ALC-1]
gi|159877932|gb|EDP71988.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriales
bacterium ALC-1]
Length = 343
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 153/254 (60%), Gaps = 35/254 (13%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN--VPRAGIVHRLD 84
I +D++YED++++++NK AG+VVHP GN SGTL + L+ + L N R G+VHR+D
Sbjct: 93 IPIDVVYEDDDLLVVNKPAGMVVHPGHGNYSGTLINALIFHFENLPNNSSDRPGLVHRID 152
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIK 143
K++SGL+VVAK+ ++ HL NQ +R+Y+A+VWG + + G+I I R+P NR++
Sbjct: 153 KDTSGLLVVAKTEQAMAHLSNQFAKKTSEREYVALVWGNMTEDEGIIEGNIGRHPKNRLQ 212
Query: 144 MTVSKNFNA---KPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
TV + A KPA+T+Y ERL +++L+ C L+TGRTHQIRVHM+ +GH
Sbjct: 213 NTVYLDDEADKGKPAITHYKVIERLG-------YVTLVSCKLETGRTHQIRVHMKHIGHT 265
Query: 198 IVGDNLYG----------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
+ D YG KY + + I RQALHA LG HP L++ +P
Sbjct: 266 LFNDARYGGERILKGTTFSKYKQFVENCFKILPRQALHARTLGFEHPTTGEFLRFESEIP 325
Query: 243 DDISKLITFSGIKW 256
+DI++ I KW
Sbjct: 326 EDIAQCIE----KW 335
>gi|424866626|ref|ZP_18290458.1| Pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II 'C75']
gi|124516586|gb|EAY58094.1| ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum rubarum]
gi|387222715|gb|EIJ77134.1| Pseudouridylate synthase, 23S RNA-specific [Leptospirillum sp.
Group II 'C75']
Length = 339
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 154/253 (60%), Gaps = 24/253 (9%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
++I P ++ + + I+L+I+YED ++I+++K GLVVHPA G+ SGTL + LL +
Sbjct: 78 VLIPPPRS---QTAQPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHF 134
Query: 69 PFLINVP---------------RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113
+ RAG+VHRLD+++SG+MVV K+ + L+NQ K V
Sbjct: 135 QSQGDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVS 194
Query: 114 RKYLAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI 172
+KYLA+V GI PK G INA I R+ H+R K TV ++ KP++T Y L T ++
Sbjct: 195 KKYLALVKGILPKKRGEINAPIGRSTHDRKKFTVRQD--GKPSVTRYRVLET---YHENY 249
Query: 173 SLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNN 232
SL+ L TGRTHQIRVH ++LG ++GD +YG K +++ F RQ LHA+KL HP +N
Sbjct: 250 SLLEVTLLTGRTHQIRVHFRYLGFPLLGDAVYGSKGTENKNFPRQMLHAWKLSFQHPSSN 309
Query: 233 LKLKWRINLPDDI 245
K+++ LP D
Sbjct: 310 SKMEFEAPLPPDF 322
>gi|296284607|ref|ZP_06862605.1| pseudouridine synthase D large subunit [Citromicrobium
bathyomarinum JL354]
Length = 314
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 149/262 (56%), Gaps = 21/262 (8%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ +G I P + E + I L + YED +I+++K AG+VVHPA GN GTL
Sbjct: 55 VAAGTPFTIALPAPTPL--EAEPQDIPLVVAYEDAHLIVVDKPAGMVVHPAAGNRDGTLV 112
Query: 62 DNLL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117
+ LL + V R GIVHR+DK++SGL+VVAK+ ++ L Q H + R+Y+
Sbjct: 113 NALLYHCRGQLSGINGVERPGIVHRIDKDTSGLLVVAKTDAAHEGLARQFADHSISRRYV 172
Query: 118 AMVWGIPK-LNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYYERLAT-GIINKKHIS 173
A+ G P+ G I+A + R+ +R KM V ++ K A+T+Y T G+ S
Sbjct: 173 AVCAGQPRPAEGTIDARLGRSDRDRKKMAVLDPQSTRGKHAVTHYRTTKTFGV-----AS 227
Query: 174 LIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLI 227
++ C L+TGRTHQ+RVH +GH ++GD YG+ + L F RQALHA LG I
Sbjct: 228 ILECRLETGRTHQVRVHCASIGHPLLGDPQYGRDPKALRPIIEKLAFRRQALHAASLGFI 287
Query: 228 HPKNNLKLKWRINLPDDISKLI 249
HP +L++R +LP D+ +LI
Sbjct: 288 HPATGERLEFRADLPRDMGELI 309
>gi|341584457|ref|YP_004764948.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia heilongjiangensis 054]
gi|340808682|gb|AEK75270.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia heilongjiangensis 054]
Length = 313
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 163/272 (59%), Gaps = 24/272 (8%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKV------IKLDIIYEDNEIIILNKSAGLVVHPAIG 54
+IIS ++++ + FF K +++ + LDIIYED+++I++NK+AG+ VHP G
Sbjct: 45 VIISDPDVLVKENDSIFFSFKEPEELKIATANVALDIIYEDDDLIVINKAAGMTVHPGAG 104
Query: 55 NLSGTLFDNLLEIYPFLINV---PRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHI 111
+ TL + LL L ++ R GIVHRLDK+++GLMVVAK+ K+++ L NQ++
Sbjct: 105 HHDDTLVNALLHHTKNLSDIGSSERPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQ 164
Query: 112 VQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKK 170
V RKY +VWG I L G+I I R+ +R KMT+ K + K A+T+Y+ L + K
Sbjct: 165 VIRKYKVLVWGVINPLEGVIKNNIGRSRSDRQKMTILK-YGGKEAVTHYKTLE--LFYKG 221
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK-----------YSKSLIFNRQAL 219
IS++ C L TGRTHQIRV + L H +VGD YG +K + F RQAL
Sbjct: 222 SISMVECKLSTGRTHQIRVQLSHLKHSVVGDQTYGNNDRKIAHSPPELKAKLIDFKRQAL 281
Query: 220 HAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
H++ L IHP +N +++ LP D+ ++I+
Sbjct: 282 HSWYLSFIHPTSNEIMEFSCELPRDMEEIISL 313
>gi|86747580|ref|YP_484076.1| pseudouridine synthase RluD [Rhodopseudomonas palustris HaA2]
gi|86570608|gb|ABD05165.1| ribosomal large subunit pseudouridine synthase D [Rhodopseudomonas
palustris HaA2]
Length = 324
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 151/247 (61%), Gaps = 25/247 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ I L+I++ED++II++NK GLVVHPA G+ +GTL + L+ E + V R GIV
Sbjct: 72 EAIALEIVHEDDDIIVINKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIV 131
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIM 135
HRLDK+++GLMV AK+ +++ L Q H ++R Y A VWG+P + G I A I
Sbjct: 132 HRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGVPNRARGTIEAPID 191
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQW 193
R+P+ R KM V + A+T++E L T G + +SLI C L+TGRTHQIRVH+
Sbjct: 192 RHPYAREKMAVRDG--GREAITHWEVLETFTGRSGGEIVSLIACQLETGRTHQIRVHLAH 249
Query: 194 LGHGIVGDNLYGKKY----------SKSLIFN--RQALHAYKLGLIHPKNNLKLKWRINL 241
LGH ++GD++YG + +++ + + RQALHAY L L HP + + W L
Sbjct: 250 LGHPLLGDDVYGPHFKTKASQLSPAARAALADLGRQALHAYLLVLEHPSSGEVMAWESGL 309
Query: 242 PDDISKL 248
P D+++L
Sbjct: 310 PADLARL 316
>gi|330831468|ref|YP_004394420.1| ribosomal large subunit pseudouridine synthase D [Aeromonas veronii
B565]
gi|423203216|ref|ZP_17189794.1| RluA family pseudouridine synthase [Aeromonas veronii AER39]
gi|423211880|ref|ZP_17198413.1| RluA family pseudouridine synthase [Aeromonas veronii AER397]
gi|328806604|gb|AEB51803.1| Ribosomal large subunit pseudouridine synthase D [Aeromonas veronii
B565]
gi|404612681|gb|EKB09739.1| RluA family pseudouridine synthase [Aeromonas veronii AER397]
gi|404613445|gb|EKB10467.1| RluA family pseudouridine synthase [Aeromonas veronii AER39]
Length = 326
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I+L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 DAQDIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPGIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G ++A I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPTQRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V N +P++T+Y +++K H L R L+TGRTHQIRVHM + H +V
Sbjct: 198 HMAVVP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMAHIKHPLV 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG + + L FNRQALHA L L HP ++W P D+ +L
Sbjct: 249 GDPAYGGRLRPLRNATPELTQALRNFNRQALHATMLQLAHPITGEVMQWHSATPQDMVEL 308
Query: 249 I 249
+
Sbjct: 309 M 309
>gi|91206061|ref|YP_538416.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii RML369-C]
gi|157826559|ref|YP_001495623.1| ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii OSU 85-389]
gi|91069605|gb|ABE05327.1| Ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii RML369-C]
gi|157801863|gb|ABV78586.1| Ribosomal large subunit pseudouridine synthase RluD subfamily
protein [Rickettsia bellii OSU 85-389]
Length = 312
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 146/242 (60%), Gaps = 18/242 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGI 79
E IKLDI+YED ++I++NK+AG+ VHP G+ TL + LL L ++ R GI
Sbjct: 73 EAADIKLDIVYEDEDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTRNLSDIGSSERPGI 132
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP 138
VHRLDK+++GLMVVAK+ K+++ L NQ++ V RKY A+VWG I L G I I R+
Sbjct: 133 VHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVVRKYKALVWGVINPLEGTIKNNIGRSR 192
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
+R KMT+ K + K A+TYY+ L + IS++ C L TGRTHQIRV + L H +
Sbjct: 193 SDRQKMTILK-YGGKEAVTYYKTLE--LFYGGSISMVECKLATGRTHQIRVQLSHLKHSV 249
Query: 199 VGDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
VGD +YG +K L F RQALH++ L HP +N +++ LP D+
Sbjct: 250 VGDQIYGNNDRKINHAPPELKAKLLDFKRQALHSWYLSFTHPTSNEVMEFSCELPKDMEG 309
Query: 248 LI 249
+I
Sbjct: 310 VI 311
>gi|38492837|pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic
Module
Length = 252
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 140/238 (58%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 4 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 63
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL VVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 64 LDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPISRHPTKRT 123
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
V + KPA+T+Y ++ + +R L+TGRTHQIRVH + H +VGD
Sbjct: 124 HXAV--HPXGKPAVTHYRIXEHFRVHTR----LRLRLETGRTHQIRVHXAHITHPLVGDP 177
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++ +W +P D +LI
Sbjct: 178 VYGGRPRPPKGASEAFISTLRKFDRQALHATXLRLYHPISGIEXEWHAPIPQDXVELI 235
>gi|335036873|ref|ZP_08530188.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
ATCC 31749]
gi|333791697|gb|EGL63079.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
ATCC 31749]
Length = 340
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 160/277 (57%), Gaps = 39/277 (14%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G + I+ P+ + + E I LD+ YED ++I+L K AGLVVHP GN +GTL + L
Sbjct: 68 GDRIEIVMPEPEDPVPQGED--IPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNAL 125
Query: 65 L----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKY 116
+ + + V R GIVHRLDK +SG+MVVAK+ ++ HL Q H ++R Y
Sbjct: 126 IYHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAY 185
Query: 117 LAMVWGIPK-LNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYYERLATGIINKKH-- 171
A+VWG P+ L G ++AA+ R +R K V +F+A+ A+T+YE ++ + H
Sbjct: 186 KAVVWGRPRTLRGTVDAALGRG-TDRTKRAVKNEDSFDAREAITHYE-----VMERFHEK 239
Query: 172 ------ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI-- 213
S++ C L+TGRTHQIRVHM +GH ++GD YG + ++S +
Sbjct: 240 PDASCLASMVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFRTKANLLDEPARSTVNR 299
Query: 214 FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
F RQALHAY L HP+ +++ ++P+D+ +L+T
Sbjct: 300 FPRQALHAYLLAFEHPRTGEVMEFETDMPEDMEELLT 336
>gi|255019802|ref|ZP_05291878.1| Ribosomal large subunit pseudouridine synthase D [Acidithiobacillus
caldus ATCC 51756]
gi|254970731|gb|EET28217.1| Ribosomal large subunit pseudouridine synthase D [Acidithiobacillus
caldus ATCC 51756]
Length = 320
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L I++ED+++++++K AGL HP G GTL + +L P +PRAGIVHR
Sbjct: 78 QAEAMDLTIVHEDSQLLVIDKPAGLATHPGAGRPRGTLANAVLAHCPANERLPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD ++SGL+VVAK+ + L+ QL + R+YLA+V G G + A I R+P +R+
Sbjct: 138 LDMDTSGLLVVAKTELARQSLIAQLADRSMHREYLALVQGALTGGGHVEAPIGRHPQDRL 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+MTV + + +PA T Y ER +H SL+R L TGRTHQIRVHM+ LGH +V
Sbjct: 198 RMTVRR--DGRPARTDYRLVERF------PRH-SLLRLRLATGRTHQIRVHMRHLGHPLV 248
Query: 200 GDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + ++ F RQALHA++L L HP++ +W + +P D+ +L
Sbjct: 249 GDPLYGGRPILPAGLGAAGLARWQAFRRQALHAWRLILEHPESGDTCQWEVAMPTDMDEL 308
Query: 249 I 249
+
Sbjct: 309 L 309
>gi|67459733|ref|YP_247357.1| ribosomal large subunit pseudouridine synthase D [Rickettsia felis
URRWXCal2]
gi|67005266|gb|AAY62192.1| Ribosomal large subunit pseudouridine synthases, RluD subfamily
[Rickettsia felis URRWXCal2]
Length = 385
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 151/243 (62%), Gaps = 18/243 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
I LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 119 IALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSAERPGIVHRL 178
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY A+VWG I L G+I I R+ +R
Sbjct: 179 DKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLEGVIKNNIGRSRVDRQ 238
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + +K IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 239 KMTILK-YGGKEAVTHYKTLE--LFHKGTISMVECKLSTGRTHQIRVQLSHLKHSVVGDQ 295
Query: 203 LYG---KKYSKSL--------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG +K + SL F RQALH++ L HP +N +K+ LP D+ ++I
Sbjct: 296 TYGNNDRKIAHSLPELKAKLIDFKRQALHSWYLSFTHPTSNEIMKFSCELPRDMEEIIAT 355
Query: 252 SGI 254
+
Sbjct: 356 DAL 358
>gi|16272141|ref|NP_438344.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae Rd KW20]
gi|260580943|ref|ZP_05848767.1| sfhB protein [Haemophilus influenzae RdAW]
gi|1175998|sp|P44445.1|RLUD_HAEIN RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|1573131|gb|AAC21845.1| sfhB protein (sfhB) [Haemophilus influenzae Rd KW20]
gi|260092432|gb|EEW76371.1| sfhB protein [Haemophilus influenzae RdAW]
Length = 324
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP ++ VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|121999014|ref|YP_001003801.1| RluA family pseudouridine synthase [Halorhodospira halophila SL1]
gi|121590419|gb|ABM62999.1| ribosomal large subunit pseudouridine synthase D [Halorhodospira
halophila SL1]
Length = 313
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 140/236 (59%), Gaps = 17/236 (7%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I L ++YED+ +++++K AGLVVHP GN GTL + LL P L +PRAGIVHRLD
Sbjct: 78 EPIPLRLLYEDDHLLVVDKPAGLVVHPGAGNPGGTLVNALLHYDPGLEALPRAGIVHRLD 137
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K +SG++VVA++ ++ LV QL+ V R Y A+V G P G ++A I R+P +R +M
Sbjct: 138 KETSGVLVVARTYAAHHALVAQLQARTVGRGYQAVVVGRPTAGGRVDAPIARHPRDRKRM 197
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + +PA+T+Y R+A +L+ L+TGRTHQIRVHM +VGD +Y
Sbjct: 198 AVVE--TGRPAVTHY-RVAERFTAH---TLLDVELETGRTHQIRVHMAHCRLPLVGDPVY 251
Query: 205 GKK--YSKSLI---------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G++ Y K F RQALHA L L HP+ + W PDD +L+
Sbjct: 252 GRRPVYPKGASETLRAVLDGFRRQALHARHLRLEHPRTGEAMHWEAPPPDDWERLL 307
>gi|319898141|ref|YP_004136338.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae F3031]
gi|317433647|emb|CBY82032.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae F3031]
Length = 324
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP ++ VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|410641945|ref|ZP_11352463.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
chathamensis S18K6]
gi|410138262|dbj|GAC10650.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
chathamensis S18K6]
Length = 327
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 149/256 (58%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + + I L+I+YED I+++NK LVVHP GN +GT+ + L
Sbjct: 64 GEELIEIDASIEI-QERHSAQAIDLNIVYEDEHILVINKPTNLVVHPGAGNANGTILNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + +VPRAGIVHRLDK+++GLMVVAK+I + HLV +L+ + R+Y A+V+G
Sbjct: 123 LSHVPDIASVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEKLQAREISREYEAVVYGNL 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPALT+Y R+ H +R L++GRT
Sbjct: 183 IAGGSVDEPIGRHPTKRTNMAVVQ--SGKPALTHY-RVKHKYRAHTH---LRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L H +VGD YG K S+ +I F RQALHA +L L HP
Sbjct: 237 HQIRVHMAHLRHPLVGDQAYGGRPRLPKAASEVMIETIRGFKRQALHAIQLELEHPITGE 296
Query: 234 KLKWRINLPDDISKLI 249
+ ++ LPDD L+
Sbjct: 297 WMSFQAPLPDDFVNLL 312
>gi|229845163|ref|ZP_04465297.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae 6P18H1]
gi|229811874|gb|EEP47569.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae 6P18H1]
Length = 324
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L+HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLVHPITGEMMEWYAPLPDDFVELL 308
>gi|419839666|ref|ZP_14363072.1| pseudouridine synthase, RluA family [Haemophilus haemolyticus
HK386]
gi|386909244|gb|EIJ73920.1| pseudouridine synthase, RluA family [Haemophilus haemolyticus
HK386]
Length = 324
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YEDN+II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDNDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|407697523|ref|YP_006822311.1| pseudouridine synthase [Alcanivorax dieselolei B5]
gi|407254861|gb|AFT71968.1| Pseudouridine synthase [Alcanivorax dieselolei B5]
Length = 323
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 154/241 (63%), Gaps = 18/241 (7%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80
+ + + I L ++YED ++I++NK AGLVVHPA G+ GTL + LL + L ++PRAGIV
Sbjct: 79 EDQPEAISLPVVYEDEDLIVINKPAGLVVHPAAGHADGTLLNGLLHLDERLSSLPRAGIV 138
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHN 140
HRLD++++GLMVVA+S++++ LV QL+ + R+Y A+ G+ G ++A I R+P +
Sbjct: 139 HRLDRDTTGLMVVARSLEAHNGLVAQLQDKSLHREYEAIAVGVMTGGGTVDAPIGRHPVD 198
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R + V KPA+T++ ++++ + + I+ L+TGRTHQIRVHM + ++
Sbjct: 199 RKRQAVVAQ-GGKPAVTHFR-----VMDRYRAHTRIQVRLETGRTHQIRVHMAHRHYPLM 252
Query: 200 GDNLYGKK------YSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + +++L F RQALHA +LGL+HP + L++ LP+D+ L
Sbjct: 253 GDPLYGGRLKFPAGATEALREALRRFPRQALHARRLGLVHPVSGEYLEFETPLPEDLQTL 312
Query: 249 I 249
I
Sbjct: 313 I 313
>gi|297183636|gb|ADI19762.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04]
Length = 322
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 148/246 (60%), Gaps = 23/246 (9%)
Query: 21 KTEKKV------IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV 74
+TE +V + LDI+YED +I+LNK AGLVVHPA G+ +GTL + LL P + +
Sbjct: 74 ETEDRVEWAPEPLPLDILYEDEHVIVLNKPAGLVVHPATGHQTGTLVNGLLAHAPEMSAL 133
Query: 75 PRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAI 134
PR GIVHRLDK++SG+M+ A+S ++ LV QL V R Y A+ G G I+A I
Sbjct: 134 PRGGIVHRLDKDTSGVMLAARSAIAHKSLVAQLADRSVSRLYSAVCRGTFTGGGTIDAPI 193
Query: 135 MRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194
R+P +R+KM V + + KP+ T+Y R+ H+S+ +L+TGRTHQIRVH+ W
Sbjct: 194 GRHPTSRLKMAVVE--DGKPSRTHY-RIEKRFSAHTHLSV---SLETGRTHQIRVHLAWR 247
Query: 195 GHGIVGDNLYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H +VGD +Y + S L+ F RQALHA +L +HP++ + + +P
Sbjct: 248 KHPLVGDPVYAGRAMRPAGASDQLVAALTGFRRQALHARRLTFLHPQSQDSMTFETPIPA 307
Query: 244 DISKLI 249
D++ L+
Sbjct: 308 DMAGLL 313
>gi|386398266|ref|ZP_10083044.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
gi|385738892|gb|EIG59088.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
Length = 335
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 156/267 (58%), Gaps = 27/267 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ SG + I P+ K E I LDI++ED++I++LNK GLVVHPA G+ +GTL
Sbjct: 62 VASGDTITIDVPEAAAPEPKGED--IALDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLV 119
Query: 62 DNLL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ L+ + V R GIVHRLDK+++GLMVVAK+ ++ L Q H ++
Sbjct: 120 NALIAHCGSSLSGIGGVRRPGIVHRLDKDTTGLMVVAKNDLAHASLTAQFADHGRTGPMR 179
Query: 114 RKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKK 170
R Y+A WG+P + G ++A I R+PH R KM V + + A+T++E L + G K
Sbjct: 180 RGYMAFAWGLPGRHRGTVDAPIDRHPHAREKMAVRQ--GGREAVTHWELLESFNGRDGKP 237
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FNRQA 218
+L+ C L+TGRTHQIRVH+ +GH ++GD +YG + S++++ RQA
Sbjct: 238 IAALLACELETGRTHQIRVHLAHIGHPLMGDAVYGPHFKTKANQLGPESQAVLAALGRQA 297
Query: 219 LHAYKLGLIHPKNNLKLKWRINLPDDI 245
LHAY L L HP+ L W LP+D+
Sbjct: 298 LHAYLLVLEHPRTGELLHWEAPLPEDL 324
>gi|395003906|ref|ZP_10388003.1| pseudouridine synthase, RluA family [Acidovorax sp. CF316]
gi|394318190|gb|EJE54650.1| pseudouridine synthase, RluA family [Acidovorax sp. CF316]
Length = 347
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 137/237 (57%), Gaps = 12/237 (5%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + +D++YED ++++NK AGLVVHPA GN SGTL + LL + VPRAGIVHRLD
Sbjct: 115 EAMDIDVVYEDEHLLVVNKPAGLVVHPAPGNWSGTLLNGLLARDAKALLVPRAGIVHRLD 174
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---WGIPKLNGMINAAIMRNPHNR 141
K++SGLMVVA+ + LV + V R+YLA+ W P + I R+P NR
Sbjct: 175 KDTSGLMVVARERSTMDALVAMIAARSVHRQYLALAHKPWAGPARR-TVQEPIGRDPRNR 233
Query: 142 IKMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
++M V + KPA T + RL G+ + C L TGRTHQIRVHM +GH +V
Sbjct: 234 LRMAVVDLASHAGKPARTDF-RLLEGVGAG---CWVECTLHTGRTHQIRVHMASIGHPLV 289
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
D LYG +L RQALHA+ L HP L+ LP D+ ++F G+++
Sbjct: 290 ADVLYGGTPVGAL--QRQALHAFHLAFTHPVTGQPLELHAPLPPDMGAALSFWGLRY 344
>gi|374577862|ref|ZP_09650958.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
gi|374426183|gb|EHR05716.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
Length = 335
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 155/267 (58%), Gaps = 27/267 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ SG + I P+ K E I LDI++ED++I++LNK GLVVHPA G+ +GTL
Sbjct: 62 VASGDTITIDVPEAAAPEPKGED--IALDIVFEDDDIVVLNKPKGLVVHPAAGHETGTLV 119
Query: 62 DNLL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ L+ + V R GIVHRLDK+++GLMVVAK+ ++ L Q H ++
Sbjct: 120 NALIAHCGSSLSGIGGVRRPGIVHRLDKDTTGLMVVAKNDLAHASLTAQFADHGRTGPMR 179
Query: 114 RKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKK 170
R Y+A WG+P + G ++A I R+PH R KM V + + A+T++E L + G K
Sbjct: 180 RGYMAFAWGLPGRHRGTVDAPIDRHPHAREKMAVRQ--GGREAVTHWELLESFNGRDGKP 237
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FNRQA 218
+L+ C L+TGRTHQIRVH+ +GH ++GD +YG + S++ + RQA
Sbjct: 238 IATLLACELETGRTHQIRVHLAHIGHPLMGDAVYGPHFKTKANQLAPESQAALAALGRQA 297
Query: 219 LHAYKLGLIHPKNNLKLKWRINLPDDI 245
LHAY L L HP+ L W LP+D+
Sbjct: 298 LHAYLLVLEHPRTGELLHWETPLPEDL 324
>gi|350273980|ref|YP_004885293.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Rickettsia japonica YH]
gi|348593193|dbj|BAK97154.1| ribosomal large subunit pseudouridine synthases rluD subfamily
protein [Rickettsia japonica YH]
Length = 313
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 163/272 (59%), Gaps = 24/272 (8%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKV------IKLDIIYEDNEIIILNKSAGLVVHPAIG 54
+IIS ++++ + FF K +++ + LDIIYED+++I++NK+AG+ VHP G
Sbjct: 45 VIISDPDVLVKENDIIFFSFKEPEELKIATANVALDIIYEDDDLIVINKAAGMTVHPGAG 104
Query: 55 NLSGTLFDNLLEIYPFLINV---PRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHI 111
+ TL + LL L ++ R GIVHRLDK+++GLMVVAK+ K+++ L NQ++
Sbjct: 105 HHDDTLVNALLHYTKNLSDIGSSERPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQ 164
Query: 112 VQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKK 170
V R+Y +VWG I L G+I I R+ NR KMT+ K + K A+T+Y+ L + K
Sbjct: 165 VIRQYKVLVWGVINPLEGVIKNNIGRSRSNRQKMTILK-YGGKEAVTHYKTLE--LFYKG 221
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK-----------YSKSLIFNRQAL 219
IS++ C L TGRTHQIRV + L H +VGD YG +K + F RQAL
Sbjct: 222 SISMVECKLSTGRTHQIRVQLSHLKHSVVGDQTYGNNDRKIALSPPELKAKLIDFKRQAL 281
Query: 220 HAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
H++ L IHP +N +++ LP D+ ++I+
Sbjct: 282 HSWYLSFIHPTSNEIMEFSCELPRDMEEIISL 313
>gi|299530513|ref|ZP_07043933.1| pseudouridine synthase, RluA family protein [Comamonas testosteroni
S44]
gi|298721489|gb|EFI62426.1| pseudouridine synthase, RluA family protein [Comamonas testosteroni
S44]
Length = 352
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 142/240 (59%), Gaps = 14/240 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L ++YED +++++NK AGLVVHPA GN +GTL + LL VPRAGIVHR
Sbjct: 115 QPETMDLQVVYEDEDLLVINKPAGLVVHPAPGNWTGTLLNGLLARDEKARQVPRAGIVHR 174
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---WGIPKLNGMINAAIMRNPH 139
LDK++SGLMVVA++ + L+ + V R+YLA+ WG K ++A I R+P
Sbjct: 175 LDKDTSGLMVVARNRSTMDALIKMIAAREVSRQYLALAHKQWGSRKRR-EVDAPIGRDPR 233
Query: 140 NRIKMTVSKNFNAKP---ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
NR++M V + N P A T ++ L + SL+RC L TGRTHQIRVHM LGH
Sbjct: 234 NRLRMAVV-DLNLHPGKQARTDFDLLDGDAAH----SLVRCTLHTGRTHQIRVHMASLGH 288
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
++ D LYG K L RQALHA++L HP L LP D++ + G+++
Sbjct: 289 PLIADTLYGGKPEGGL--ERQALHAFRLAFEHPVTKKPLVHYAPLPQDMAGALDLWGLRY 346
>gi|219849171|ref|YP_002463604.1| RluA family pseudouridine synthase [Chloroflexus aggregans DSM
9485]
gi|219543430|gb|ACL25168.1| pseudouridine synthase, RluA family [Chloroflexus aggregans DSM
9485]
Length = 310
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 143/228 (62%), Gaps = 9/228 (3%)
Query: 24 KKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI--NVPRAGIVH 81
+ I LDI+YED ++ ++NK AG+VVHPA G+ GTL + LL YP L R GIVH
Sbjct: 86 PESIPLDIVYEDADVAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAISGEVRPGIVH 145
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLD+++SGL+V+A+ + LV Q + +++ Y A+V G P + G I+A I R+P +R
Sbjct: 146 RLDRDTSGLLVIARHDAALRALVEQQQARRMRKIYQALVVGRPPVCGTIDAPIGRDPRDR 205
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
++M V + +PA T+Y +AT SL+ L+TGRTHQIRVH++ LG+ IVGD
Sbjct: 206 LRMAVVA--DGRPARTHYRVIAT----FGDYSLLEVQLETGRTHQIRVHLRHLGYPIVGD 259
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG + S L RQ LHA +LG HP++ ++ LP D+S ++
Sbjct: 260 PVYGPRRSH-LRLTRQFLHAGQLGFFHPRDGQWREFTAPLPSDLSSVL 306
>gi|291542663|emb|CBL15773.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
bromii L2-63]
Length = 306
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 142/222 (63%), Gaps = 11/222 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIVHR 82
I LDI+YED ++++NK G+VVHPA GN GTL + LL + + V R GIVHR
Sbjct: 76 IPLDIVYEDECLLVVNKPKGMVVHPAAGNYDGTLVNALLYHCGDSLSGINGVLRPGIVHR 135
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNR 141
+DK++SGL++VAK+ S+ L Q+K H R+Y ++V+G + G ++A I RNP +R
Sbjct: 136 IDKDTSGLLIVAKNDFSHRSLAEQIKEHSFTREYESIVFGNLKNDEGTVDAPIGRNPKDR 195
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V + N+K A+T+Y + I K + I+C L+TGRTHQIRVHM ++GH + GD
Sbjct: 196 KKMCVIEK-NSKNAVTHY----SVITRYKGYTHIKCKLETGRTHQIRVHMAYIGHPVSGD 250
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
+YG K K + F Q LHA K+G IHPK N +++ LPD
Sbjct: 251 KVYGVKNEK-VDFEGQCLHARKIGFIHPKTNEYIEFTSELPD 291
>gi|399116258|emb|CCG19063.1| ribosomal large subunit pseudouridine synthase D [Taylorella
asinigenitalis 14/45]
Length = 323
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 5/244 (2%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ I+P ++ + E+ I ++ E E I++ K AGLV HP GN SGTL + LL +
Sbjct: 71 VCIQPDEHTKAFQPEQ--IDFQVLEESKEWIVIGKPAGLVTHPGAGNWSGTLLNGLLFKF 128
Query: 69 PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG 128
P L VPRAGIVHRLDK++SG++VVA++ + + V QL+ + R Y+A+V G +G
Sbjct: 129 PELSYVPRAGIVHRLDKDTSGILVVARTEAAQLDFVKQLQSRTMGRSYIAIVSGCTSDSG 188
Query: 129 MINAAIMRNPHNRIKMTVSKNFN---AKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
I I R+P N IKM K N K A T++ L+ + K+ SL+ C L+TGRTH
Sbjct: 189 SITDDIGRDPRNPIKMASIKQSNPIAPKEARTHFTTLSRAEFDGKNFSLLLCKLETGRTH 248
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
QIRVH+ + H ++GD+LYG K+ RQ LHAYKL PK +L + + D+
Sbjct: 249 QIRVHLSSINHPLLGDSLYGGPDLKNFSNLRQMLHAYKLEFNDPKGGNRLAFTCEIDKDM 308
Query: 246 SKLI 249
+++
Sbjct: 309 REVM 312
>gi|298292656|ref|YP_003694595.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296929167|gb|ADH89976.1| pseudouridine synthase, RluA family [Starkeya novella DSM 506]
Length = 348
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 150/245 (61%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIVHR 82
I LDI++ED+++I+++K AGLVVHPA GN GTL + LL + V R GIVHR
Sbjct: 92 IPLDIVFEDDDLIVIDKPAGLVVHPAPGNPDGTLVNALLFHCGASLSGIGGVRRPGIVHR 151
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKL-NGMINAAIMRN 137
LDK++SGLMVVAK+ +++ L Q H ++R YLA VWG+P+L +G ++A + R+
Sbjct: 152 LDKDTSGLMVVAKNDRAHQKLAAQFADHGRTGPLERAYLAFVWGVPELPSGTVDAPLARH 211
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
P +R ++ V N + A+T+++R+ + SL+ C L+TGRTHQIRVHM +G
Sbjct: 212 PVSRERIAV--RANGRFAITHWQRVEAYEDTQGRPVASLVECQLETGRTHQIRVHMAHIG 269
Query: 196 HGIVGDNLYG----------KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + +++++ RQALHA +LG HP + + LP
Sbjct: 270 HPLLGDAVYGGGQRTKANRLSEEARTMLETLGRQALHAARLGFEHPSTGEFMSFESELPA 329
Query: 244 DISKL 248
D+ +L
Sbjct: 330 DLMRL 334
>gi|220909998|ref|YP_002485309.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219866609|gb|ACL46948.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 313
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 145/230 (63%), Gaps = 14/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE---IYPFLINVPRAGIVHRL 83
I LDI+YED++++I+NK AGLVVHPA G+ GTL + LL P + V R GIVHRL
Sbjct: 74 IPLDILYEDDQLLIVNKPAGLVVHPAPGHSGGTLVNALLAHCGDLPGIGGVQRPGIVHRL 133
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRI 142
DK++SG + +AK+ ++ HL Q+K +R+YL +V+G+PK + G I+ I R+P +R
Sbjct: 134 DKDTSGAIAIAKTELAHRHLQAQIKAKTARREYLGVVYGVPKTSSGRIDLPIGRHPVDRK 193
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V + + A+T++ ERL + +L++ L+TGRTHQIRVH+ LGH IV
Sbjct: 194 KMAVVASDKGRSAVTHWQIQERLG-------NFTLLQFQLETGRTHQIRVHIAQLGHPIV 246
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD LY ++ + QALHA+KL L HP + LP +++KL+
Sbjct: 247 GDPLYSSGHATGVNLTGQALHAWKLALQHPVTGATIAVTAPLPPELTKLL 296
>gi|387769192|ref|ZP_10125458.1| pseudouridine synthase, RluA family [Pasteurella bettyae CCUG 2042]
gi|386907148|gb|EIJ71863.1| pseudouridine synthase, RluA family [Pasteurella bettyae CCUG 2042]
Length = 324
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 17/241 (7%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN +GT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPQNLPLNIVYEDDDILVINKPKDFVVHPGAGNPNGTVLNALLYHYPQIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ +GI G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTQLVRALQKRKITREYEAIAFGIMTKGGTVDEPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V KPA+T+Y + + ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 194 KRTLMAVHP--MGKPAITHYRIME----HFRNYTRLRLRLETGRTHQIRVHMAHIAHPLL 247
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K S+ + F RQALHA L L HP ++W LPDD +L
Sbjct: 248 GDQTYGGRPRPPKNASEEFMTVMRNFQRQALHAVMLRLEHPITGELMEWHAPLPDDFVEL 307
Query: 249 I 249
+
Sbjct: 308 V 308
>gi|33519652|ref|NP_878484.1| pseudouridine synthase [Candidatus Blochmannia floridanus]
gi|34395754|sp|P59838.1|RLUD_BLOFL RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|33517315|emb|CAD83700.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Blochmannia floridanus]
Length = 321
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 162/262 (61%), Gaps = 24/262 (9%)
Query: 7 ELIIIKPKKNFFLNKTEKKV---IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
ELI IK N + K+E V I L+IIYEDN+I+++NK++ +VVHP IG+ GT+ +
Sbjct: 61 ELIEIKYINNNDICKSEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNA 120
Query: 64 LLEIYPFLINVPR-AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP ++ + + AGIV RLDK+++GLM++AK++ +Y +L+ K+ V ++Y A+V+G
Sbjct: 121 LLYRYPSILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYG 180
Query: 123 IPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
N G++N + R+ R M+V ++ K A+TYY + K H S +R NLKT
Sbjct: 181 KFTSNAGVVNQPMRRHFAKRTFMSV--HYTGKSAVTYYSVVEEF---KAH-SRVRINLKT 234
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG--------KKYSKS-----LIFNRQALHAYKLGLIH 228
GRTHQIRVHM ++ H +VGD Y KK S L FNRQALHA L L+H
Sbjct: 235 GRTHQIRVHMAYINHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLH 294
Query: 229 PKNNLKLKWRINLPDDISKLIT 250
P +++KW LP DI +LI
Sbjct: 295 PITQVQMKWNAPLPQDILQLIA 316
>gi|315121810|ref|YP_004062299.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495212|gb|ADR51811.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 340
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 159/270 (58%), Gaps = 35/270 (12%)
Query: 13 PKKNFFLNKTE-------KKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
P ++FF++ + + I LDI+YED++II++NK AGLVVHPA GN +GTL + LL
Sbjct: 67 PGESFFIDVPQLQQLNIAAENIPLDILYEDDDIIVINKQAGLVVHPAPGNWTGTLVNALL 126
Query: 66 EIY----PFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYL 117
+ + R GIVHRLDK+++G MVVAK+ ++ L Q H ++R Y
Sbjct: 127 HHCNNNLSGINGIKRPGIVHRLDKDTTGTMVVAKNDIAHQRLSEQFADHGLHMGLKRSYY 186
Query: 118 AMVWGIPKLN-GMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKH--- 171
AMVWG+P + G INA + R NR++ V + + A+T Y+ + I NK
Sbjct: 187 AMVWGVPSPDSGTINAPLGRCKSNRLRRAVKRIEDKTGDRAVTRYQTVE--IYNKNSNFA 244
Query: 172 ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLIFN--RQAL 219
SL+RC+L+TGRTHQIRVHM G+ I+GD LYGK + +KS I + RQAL
Sbjct: 245 ASLLRCDLETGRTHQIRVHMAHKGYPIIGDPLYGKGFKTKENIVNHSTKSAILSLARQAL 304
Query: 220 HAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
HAY L HP N + ++ +P+D+S +I
Sbjct: 305 HAYSLSFTHPCKNKDMNFKTPIPEDMSNVI 334
>gi|340783176|ref|YP_004749783.1| ribosomal large subunit pseudouridine synthase D [Acidithiobacillus
caldus SM-1]
gi|340557327|gb|AEK59081.1| Ribosomal large subunit pseudouridine synthase D [Acidithiobacillus
caldus SM-1]
Length = 275
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L I++ED+++++++K AGL HP G GTL + +L P +PRAGIVHR
Sbjct: 33 QAEAMDLTIVHEDSQLLVIDKPAGLATHPGAGRPRGTLANAVLAHCPANERLPRAGIVHR 92
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD ++SGL+VVAK+ + L+ QL + R+YLA+V G G + A I R+P +R+
Sbjct: 93 LDMDTSGLLVVAKTELARQSLIAQLADRSMHREYLALVQGALTGGGHVEAPIGRHPQDRL 152
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+MTV + + +PA T Y ER +H SL+R L TGRTHQIRVHM+ LGH +V
Sbjct: 153 RMTVRR--DGRPARTDYRLVERF------PRH-SLLRLRLATGRTHQIRVHMRHLGHPLV 203
Query: 200 GDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + ++ F RQALHA++L L HP++ +W + +P D+ +L
Sbjct: 204 GDPLYGGRPILPAGLGAAGLARWQAFRRQALHAWRLILEHPESGDTCQWEVAMPTDMDEL 263
Query: 249 I 249
+
Sbjct: 264 L 264
>gi|399043350|ref|ZP_10737704.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398058188|gb|EJL50096.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 341
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 158/271 (58%), Gaps = 30/271 (11%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
+E+++ +P+ + I LDI+YED+++I+++K AGLVVHPA GN +GTL + L+
Sbjct: 71 FEIVLPEPEDPTPRGEN----IPLDILYEDDDLIVISKPAGLVVHPAAGNWTGTLVNALI 126
Query: 66 ----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYL 117
+ + V R GIVHRLDK+++G+MVVAK+ S+ HL Q H ++R Y
Sbjct: 127 YHCGDSLSGIGGVRRPGIVHRLDKDTTGVMVVAKNDISHRHLSLQFADHGRTMPLERAYQ 186
Query: 118 AMVWGIPK-LNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYYERLATGIINKKHI-- 172
A+VWG P+ L G INA++ R +R + V ++ +A A+T+YE L N
Sbjct: 187 AIVWGRPRTLTGTINASLGRAVGDRTRRAVKRAETQDADEAITHYEVLERFHENPDATSL 246
Query: 173 -SLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL------------IFNRQAL 219
SL+ C+L+TGRTHQIRVHM +GH ++GD +YG + F RQAL
Sbjct: 247 ASLVECHLETGRTHQIRVHMAHIGHPLLGDTVYGAGFKTKANLLPDAARKTVNAFARQAL 306
Query: 220 HAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
HAY L HP+ + + + LP+D+ +L +
Sbjct: 307 HAYMLQFEHPRTGEVMHFEVPLPEDMEELAS 337
>gi|410031141|ref|ZP_11280971.1| RluA family pseudouridine synthase [Marinilabilia sp. AK2]
Length = 383
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 150/246 (60%), Gaps = 29/246 (11%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP----RAGIVHR 82
I LDI+YED+ ++++NK AG+VVHPA GN SGTL + L+ + L +P R G+VHR
Sbjct: 133 IPLDIVYEDDHLLVVNKPAGMVVHPAHGNWSGTLVNGLVYYFNQLPTLPGNTGRPGLVHR 192
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNR 141
+DK++SGL+V+AKS + L NQ H + R YLA+VWG PK G I A + R+ +R
Sbjct: 193 IDKDTSGLLVIAKSELAMTELANQFFHHHIDRTYLALVWGEPKEEEGTIVAHVGRSAKDR 252
Query: 142 IKMTVSKN-FNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M + K A+T+++ I+ K +++SL++CNL+TGRTHQIR HM++LGH +
Sbjct: 253 KVMDAYPDGSQGKHAVTHWK-----ILKKLRYVSLVQCNLETGRTHQIRAHMKFLGHPLF 307
Query: 200 GDNLYG----------KKYSKSLIFN------RQALHAYKLGLIHPKNNLKLKWRINLPD 243
D +YG KY KS + N RQALHA LG HP + KL + LPD
Sbjct: 308 NDAMYGGDKIRKGTQFSKY-KSFVHNCFELMPRQALHAMSLGFTHPVSKQKLYFEAPLPD 366
Query: 244 DISKLI 249
D + ++
Sbjct: 367 DFASVL 372
>gi|410647344|ref|ZP_11357779.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
agarilytica NO2]
gi|410133199|dbj|GAC06178.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola
agarilytica NO2]
Length = 327
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 150/256 (58%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + ++ I L+I+YED I+++NK LVVHP GN +GT+ + L
Sbjct: 64 GEELIEIDASIEIQERHSAQE-IDLNIVYEDEHILVINKPTNLVVHPGAGNANGTILNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + +VPRAGIVHRLDK+++GLMVVAK+I + HLV +L+ + R+Y A+V+G
Sbjct: 123 LSHVPDIASVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEKLQAREISREYEAVVYGNL 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPALT+Y R+ H +R L++GRT
Sbjct: 183 IAGGSVDEPIGRHPTKRTNMAVVQ--SGKPALTHY-RVKHKYRAHTH---LRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L H +VGD YG K S+ +I F RQALHA +L L HP
Sbjct: 237 HQIRVHMAHLRHPLVGDQAYGGRPRLPKAASEVMIETIRGFKRQALHAIQLELEHPITGE 296
Query: 234 KLKWRINLPDDISKLI 249
+ ++ LPDD L+
Sbjct: 297 WMSFQAPLPDDFVNLL 312
>gi|221066026|ref|ZP_03542131.1| pseudouridine synthase, RluA family [Comamonas testosteroni KF-1]
gi|220711049|gb|EED66417.1| pseudouridine synthase, RluA family [Comamonas testosteroni KF-1]
Length = 358
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 142/240 (59%), Gaps = 14/240 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L ++YED +++++NK AGLVVHPA GN +GTL + LL VPRAGIVHR
Sbjct: 115 QPEAMDLQVVYEDEDLLVINKPAGLVVHPAPGNWTGTLLNGLLARDEKARQVPRAGIVHR 174
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---WGIPKLNGMINAAIMRNPH 139
LDK++SGLMVVA++ + L+ + V R+YLA+ WG K ++A I R+P
Sbjct: 175 LDKDTSGLMVVARNRSTMDALIKMIAAREVSRQYLALAHKQWGSRKRR-EVDAPIGRDPR 233
Query: 140 NRIKMTVSKNFNAKP---ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
NR++M V + N P A T ++ L + SL+RC L TGRTHQIRVHM LGH
Sbjct: 234 NRLRMAVV-DLNLHPGKQARTDFDLLDGDAAH----SLVRCTLHTGRTHQIRVHMASLGH 288
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
++ D LYG + L RQALHA++L HP L LP D++ + G+++
Sbjct: 289 PLIADTLYGGQPEGGL--ERQALHAFRLAFEHPVTKKPLVHHAPLPQDMAGALDLWGLRY 346
>gi|40889481|pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna
Pseudouridine Synthase Rlud
Length = 349
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 101 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 160
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL VVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 161 LDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPISRHPTKRT 220
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
V + KPA+T+Y ++ + +R L+TGRTHQIRVH + H +VGD
Sbjct: 221 HXAV--HPMGKPAVTHYRIXEHFRVHTR----LRLRLETGRTHQIRVHXAHITHPLVGDP 274
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++ +W +P D +LI
Sbjct: 275 VYGGRPRPPKGASEAFISTLRKFDRQALHATXLRLYHPISGIEXEWHAPIPQDXVELI 332
>gi|209694254|ref|YP_002262182.1| 23S rRNA pseudouridine synthase D [Aliivibrio salmonicida LFI1238]
gi|208008205|emb|CAQ78349.1| ribosomal large subunit pseudouridine synthase D [Aliivibrio
salmonicida LFI1238]
Length = 324
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 150/258 (58%), Gaps = 24/258 (9%)
Query: 5 GYELIIIKPKKNFFLNKTEK---KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
G E I++K + L E+ + I L+I+YED++I+++NK LVVHP G GT+
Sbjct: 61 GGEEIVVKAE----LEDEERWLAQDIPLEIVYEDDDILVINKPRDLVVHPGAGTPDGTIL 116
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL YP + VPRAGIVHRLDK+++GLMVVAK++ + LV L+ + R+Y A+V
Sbjct: 117 NALLFHYPSIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRKITREYEAIVL 176
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G GMI I R+P R M V + K A+T+Y R+A + H L R L+T
Sbjct: 177 GRMTAGGMIEKPIGRHPQKRTLMAVHE--LGKDAVTHY-RVAEHF--RIHTRL-RLRLET 230
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPK 230
GRTHQIRVHM +L H +VGD YG K S+ LI FNRQALHA L HP
Sbjct: 231 GRTHQIRVHMSFLQHPLVGDTAYGGRARIPKGASQELIDMIRGFNRQALHAAMLRFDHPI 290
Query: 231 NNLKLKWRINLPDDISKL 248
+++ +PDDI L
Sbjct: 291 TGEVMEFHAPIPDDIIAL 308
>gi|163755786|ref|ZP_02162904.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
gi|161324307|gb|EDP95638.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
Length = 346
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 152/257 (59%), Gaps = 41/257 (15%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP-----RAGIVH 81
I +DI+YED++++++NK AG+VVHP GN SGTL + L IY F N+P R G+VH
Sbjct: 95 IPIDIVYEDDDLLVVNKPAGMVVHPGHGNYSGTLINAL--IYHF-DNLPKNSNERPGLVH 151
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHN 140
R+DK++SGL+VVAK+ ++ HL Q +R Y A+VWG + + G + I R+P N
Sbjct: 152 RIDKDTSGLLVVAKTEEAMTHLAKQFFDKTSERIYYALVWGNVEEDEGTVEGNIGRHPKN 211
Query: 141 RIKMTVSKNFNA---KPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194
R++ TV +A KPA+T+Y ERL +++L+ C L+TGRTHQIRVHM+ +
Sbjct: 212 RLQNTVFFGEDADKGKPAVTHYKVLERLG-------YVTLVSCQLETGRTHQIRVHMKHI 264
Query: 195 GHGIVGDNLYG----------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRI 239
GH + D YG KY + + I RQALHA LG IHP+ K+ +
Sbjct: 265 GHTLFNDERYGGERILKGTTFTKYKQFVENCFKILPRQALHAKTLGFIHPRTGEKMSFNS 324
Query: 240 NLPDDISKLITFSGIKW 256
+P DI++ I KW
Sbjct: 325 EVPSDIAECIE----KW 337
>gi|311748762|ref|ZP_07722547.1| ribosomal large subunit pseudouridine synthase D [Algoriphagus sp.
PR1]
gi|126577297|gb|EAZ81545.1| ribosomal large subunit pseudouridine synthase D [Algoriphagus sp.
PR1]
Length = 344
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 150/251 (59%), Gaps = 29/251 (11%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI----NVPRAGIVHR 82
I+LDIIYED ++I+NK AG+VVHPA GN SGTL + L+ + L N R G+VHR
Sbjct: 95 IELDIIYEDKYLLIVNKPAGMVVHPAHGNWSGTLANALVYHFQDLPEMKGNEGRPGLVHR 154
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNR 141
+DK++SGL+V+AK ++ HL +Q H + R Y+A+VWG PK + G I + R+ NR
Sbjct: 155 IDKDTSGLLVIAKQEEAMTHLASQFFHHTIDRTYIALVWGEPKEDEGTIEGNVGRSAKNR 214
Query: 142 IKMTV-SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
M V K A+T+++ L +++SLI+CNL+TGRTHQIR HM+++GH +
Sbjct: 215 KVMDVFPDGEQGKHAITHWKVLK----RLRYVSLIQCNLETGRTHQIRAHMKYIGHPLFN 270
Query: 201 DNLY-------GKKYSKSLIF--------NRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
D +Y G ++SK F RQALHA LG IHP + K+ + + LP D
Sbjct: 271 DAMYGGDKIRKGTQFSKYKTFVQNCFDLIPRQALHAMSLGFIHPVSKEKVYYEVGLPKDF 330
Query: 246 SKLITFSGIKW 256
+ ++ KW
Sbjct: 331 ADVLE----KW 337
>gi|33151686|ref|NP_873039.1| 23S rRNA pseudouridine synthase D [Haemophilus ducreyi 35000HP]
gi|34395836|sp|Q9L7A7.2|RLUD_HAEDU RecName: Full=Ribosomal large subunit pseudouridine synthase D;
AltName: Full=23S rRNA pseudouridine(1911/1915/1917)
synthase; AltName: Full=rRNA pseudouridylate synthase D;
AltName: Full=rRNA-uridine isomerase D
gi|33147907|gb|AAP95428.1| pseudouridine synthase [Haemophilus ducreyi 35000HP]
Length = 325
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I++ED++III+NK LVVHP GN GT+ + LL YP + VPRAGI+HR
Sbjct: 78 EPQNIPLNIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYPPIAEVPRAGIIHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAITHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S++ + F RQALHA L L HP N ++ LP D +L
Sbjct: 249 GDQLYGGRPRPPKGSSEAFLTVLRAFQRQALHATMLRLEHPINGELIECHAPLPADFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>gi|414168204|ref|ZP_11424408.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410888247|gb|EKS36051.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 324
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 149/248 (60%), Gaps = 25/248 (10%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPR 76
+ E + I LDI++ED ++I+++K LVVHPA G+ +GTL + L+ ++ V R
Sbjct: 68 EPEGEDIPLDIVFEDGDLIVIDKPKNLVVHPAAGHETGTLVNALIAHCGASLSGIGGVKR 127
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMIN 131
GIVHRLDK+++GLMVVAK+ +++ L Q H ++R Y+A VWG+P + +G IN
Sbjct: 128 PGIVHRLDKDTTGLMVVAKNDRAHQSLSAQFADHGRTGEMRRGYMAFVWGVPNRKSGTIN 187
Query: 132 AAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRV 189
I R+PH R KM V + + A+T++E L T G K SL+ C L+TGRTHQIRV
Sbjct: 188 EPIDRHPHTREKMAVRQG--GREAVTHWEVLETFTGKDGKPVASLLACQLETGRTHQIRV 245
Query: 190 HMQWLGHGIVGDNLYGKKY-----------SKSLI-FNRQALHAYKLGLIHPKNNLKLKW 237
H+ LGH ++GD +YG + K+L RQALHAY L L HP + L W
Sbjct: 246 HLAHLGHPLLGDEVYGSGFKTKARQLGPESQKALTALGRQALHAYLLVLEHPGSGEILHW 305
Query: 238 RINLPDDI 245
LP+D+
Sbjct: 306 ESGLPEDL 313
>gi|417839576|ref|ZP_12485752.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M19107]
gi|417840404|ref|ZP_12486539.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M19107]
gi|341948464|gb|EGT75093.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M19107]
gi|341952323|gb|EGT78854.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M19107]
Length = 324
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ ++LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNSLLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|410583548|ref|ZP_11320654.1| ribosomal large subunit pseudouridine synthase D [Thermaerobacter
subterraneus DSM 13965]
gi|410506368|gb|EKP95877.1| ribosomal large subunit pseudouridine synthase D [Thermaerobacter
subterraneus DSM 13965]
Length = 321
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 150/248 (60%), Gaps = 14/248 (5%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
G E++I P+ + + + LD++YED ++++LNK G VVHPA G+ GTL +
Sbjct: 69 PGEEVVIELPEPA--PSGVVPEALPLDVVYEDPDVVVLNKPRGWVVHPAPGHPQGTLANA 126
Query: 64 LLEIYPFLINV--P-RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
LL YP + V P R GIVHRLD++++GL+VVA+S +Y LV Q+K V R+YLA+V
Sbjct: 127 LLARYPEMEGVGGPGRPGIVHRLDRDTTGLLVVARSPLAYRELVRQIKERRVHREYLALV 186
Query: 121 WGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCN 178
G P++ G + A I R+P +R +MTV +PA T++ ++ + +L+RC
Sbjct: 187 RGWPEVREGTVEAPIGRHPADRTRMTVLTT-GGRPARTHF-----AVVEQVGRYTLLRCW 240
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK-SLIFNRQALHAYKLGLIHPKNNLKLKW 237
L TGRTHQIRVH+ ++G + GD +YG + ++ L QALHA +L HP++ + +
Sbjct: 241 LDTGRTHQIRVHLAFIGLPVAGDPVYGGRRAQGELGLEGQALHATRLAFAHPRDGRPMDF 300
Query: 238 RINLPDDI 245
+ P D
Sbjct: 301 TVPPPADF 308
>gi|414163774|ref|ZP_11420021.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410881554|gb|EKS29394.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 343
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 149/248 (60%), Gaps = 25/248 (10%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPR 76
+ E + I LDI+YED+++++LNK GLVVHPA G+ +GTL + L+ ++ V R
Sbjct: 87 EPEGENIPLDIVYEDDDLLVLNKPKGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVRR 146
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMIN 131
GIVHRLDK+++GLMVVAK+ +++ L Q H ++R Y+A VWG P +L+G I+
Sbjct: 147 PGIVHRLDKDTTGLMVVAKNDRAHQSLTAQFADHGRTGALRRGYMAFVWGAPSRLHGTID 206
Query: 132 AAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRV 189
I R+P R KM V + + A+T++E L + G K SL+ C L+TGRTHQIRV
Sbjct: 207 QPIDRHPFAREKMAVRQ--GGRHAVTHWELLESFEGRDGKPIASLLACQLETGRTHQIRV 264
Query: 190 HMQWLGHGIVGDNLYGKKY------------SKSLIFNRQALHAYKLGLIHPKNNLKLKW 237
H+ GH ++GD++YG + ++ RQALHAY L + HP + W
Sbjct: 265 HLGHAGHPLIGDDVYGSGFRTKANQLSASAKTRVAALGRQALHAYLLQIEHPATGEIMDW 324
Query: 238 RINLPDDI 245
+ LP+D+
Sbjct: 325 QSGLPEDL 332
>gi|332307416|ref|YP_004435267.1| RluA family pseudouridine synthase [Glaciecola sp. 4H-3-7+YE-5]
gi|332174745|gb|AEE23999.1| pseudouridine synthase, RluA family [Glaciecola sp. 4H-3-7+YE-5]
Length = 327
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 150/256 (58%), Gaps = 18/256 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G ELI I + ++ I L+I+YED I+++NK LVVHP GN +GT+ + L
Sbjct: 64 GEELIEIDASIEIQERHSAQE-IDLNIVYEDEHILVINKPTNLVVHPGAGNANGTILNAL 122
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L P + +VPRAGIVHRLDK+++GLMVVAK+I + HLV +L+ + R+Y A+V+G
Sbjct: 123 LSHVPDIASVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVEKLQAREISREYEAVVYGNL 182
Query: 125 KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184
G ++ I R+P R M V + + KPALT+Y R+ H +R L++GRT
Sbjct: 183 IAGGSVDEPIGRHPTKRTNMAVVQ--SGKPALTHY-RVKHKYRAHTH---LRLKLESGRT 236
Query: 185 HQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNL 233
HQIRVHM L H +VGD YG K S+ +I F RQALHA +L L HP
Sbjct: 237 HQIRVHMAHLRHPLVGDQAYGGRPRLPKAASEVMIETIRGFKRQALHAIQLELEHPITGE 296
Query: 234 KLKWRINLPDDISKLI 249
+ ++ LPDD L+
Sbjct: 297 WMSFQAPLPDDFVNLL 312
>gi|374602422|ref|ZP_09675415.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
gi|374392024|gb|EHQ63353.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
Length = 323
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 147/232 (63%), Gaps = 16/232 (6%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVH 81
+ I LDI YED ++I++NK G+VVHPA G+LSGT+ + L+ L + R GIVH
Sbjct: 95 EAIPLDIYYEDADVIVINKPRGMVVHPAPGHLSGTVVNALMHHCRDLSGINGELRPGIVH 154
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHN 140
R+DK++SGL++ AK+ +++ L QLK H V RKY A+V G + G I+A I R+PH+
Sbjct: 155 RIDKDTSGLLMAAKNDRAHTELAAQLKAHTVLRKYKALVHGNLAHDQGTIDAPIGRDPHD 214
Query: 141 RIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
R KM + N+K A+T++ ER ++L+ L+TGRTHQIRVHM+++GH
Sbjct: 215 R-KMFAVTDRNSKRAVTHFQVAERFGD-------VTLVELQLETGRTHQIRVHMKYIGHP 266
Query: 198 IVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+VGD +Y + + + + QALHA LG +HP + L++ LPDD+ L+
Sbjct: 267 LVGDPMYTRGV-RGVTMDGQALHAATLGFVHPVSGELLQFEAPLPDDMEHLL 317
>gi|145639768|ref|ZP_01795370.1| SfhB [Haemophilus influenzae PittII]
gi|145271136|gb|EDK11051.1| SfhB [Haemophilus influenzae PittII]
gi|309750408|gb|ADO80392.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae R2866]
Length = 324
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP ++ VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--IGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|300854258|ref|YP_003779242.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
gi|300434373|gb|ADK14140.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
Length = 302
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 149/228 (65%), Gaps = 13/228 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
I LDI+YED ++I++NK G++VHPA G GTL + LL L IN V R GIVHR+
Sbjct: 78 IPLDILYEDKDVIVVNKPQGMIVHPAPGVYEGTLVNALLNHCRDLSGINGVTRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRI 142
DK++SG++VVAK+ S+ L QLK H + R+Y+A+V G+ KL+ G ++ I R+P ++I
Sbjct: 138 DKDTSGILVVAKNDNSHNKLAKQLKDHSMTREYIALVEGVVKLDEGTVDEPIARHPKDKI 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V N K A+T+Y+ +I + K+ +LI+C L+TGRTHQIRVHM ++GH +VGD
Sbjct: 198 KMAVC--VNGKRAITHYK-----VIKRFKNNTLIKCILETGRTHQIRVHMAYIGHPLVGD 250
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K + Q LHA KLG IHP +++ +PD K+I
Sbjct: 251 PVYGYK-KQRFKLGGQLLHAEKLGFIHPATGKYIEFETEIPDYFKKVI 297
>gi|85058561|ref|YP_454263.1| 23S rRNA pseudouridine synthase D [Sodalis glossinidius str.
'morsitans']
gi|84779081|dbj|BAE73858.1| ribosomal large subunit pseudouridine synthase D [Sodalis
glossinidius str. 'morsitans']
Length = 326
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 17/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN GT+ + LL +P +++VPRAGIVHR
Sbjct: 78 EAQAIPLNIVYEDDDILVINKPRDLVVHPGAGNADGTVLNALLHYFPPIVDVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G + I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQAREITREYEAVAIGTMTAGGTLEQPIARHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHP--MGKPAVTNY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMAHINHPLVGDP 251
Query: 203 LYG------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LYG K S + F+RQALHA L L HP +++++W LP D+ LI
Sbjct: 252 LYGGRSRPPKGASDAFNEVLRSFDRQALHATLLRLYHPITSIEMEWHAPLPQDMVALIA 310
>gi|407938373|ref|YP_006854014.1| RluA family pseudouridine synthase [Acidovorax sp. KKS102]
gi|407896167|gb|AFU45376.1| RluA family pseudouridine synthase [Acidovorax sp. KKS102]
Length = 346
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 141/236 (59%), Gaps = 14/236 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ +D++YED ++++NK AGLVVHPA GN SGTL + LL + VPRAGIVHRLDK+
Sbjct: 116 MAIDVVYEDEHLLVVNKPAGLVVHPAPGNWSGTLLNGLLARDEKALRVPRAGIVHRLDKD 175
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM---VW-GIPKLNGMINAAIMRNPHNRI 142
+SGLMVVA+ LV + V+R+Y+AM W G P + ++A I R+P NR+
Sbjct: 176 TSGLMVVARDRACMDALVALIAERKVKRQYVAMAHGAWTGAPTRS--VDAPIGRDPRNRL 233
Query: 143 KMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
+M V K A T + L G + ++C L TGRTHQIRVHM L H +VG
Sbjct: 234 RMAVVDLAVHPGKTARTDFLCLEGG----ERGCWVQCTLHTGRTHQIRVHMASLRHPLVG 289
Query: 201 DNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
D LYG +L RQALHAY+L HP L++R +PDD+ + ++ G+ +
Sbjct: 290 DALYGGAPVGAL--QRQALHAYRLAFAHPVTGEPLEFRAPVPDDMRQALSEWGLGY 343
>gi|312114651|ref|YP_004012247.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219780|gb|ADP71148.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 358
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 160/275 (58%), Gaps = 37/275 (13%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL--- 65
+ P +N+ + E + I+L+++YED +I+++K AGLVVHP GN +GTL + L+
Sbjct: 74 VTTPPAENYAV---EGEAIELNVVYEDASLIVIDKPAGLVVHPGAGNPNGTLVNALIAHC 130
Query: 66 -EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMV 120
+ + V R GIVHRLDKN+SGLMVVAK+ K++ L Q H ++R+YLA+V
Sbjct: 131 GDSLSGIGGVTRPGIVHRLDKNTSGLMVVAKTDKAHRSLSAQFADHGRTGALRREYLALV 190
Query: 121 WGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY-ERL-----------ATGII 167
WG P+ +G I A I R+ +RIKM V +N + A Y ER+ A G
Sbjct: 191 WGEPQPTSGRIEARIARHAGSRIKMAVVRNGGREAATIYATERVFRLGNVESQSAAMGKW 250
Query: 168 NKKH-ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY-SKSLIF----------- 214
NK +S++RC L+TGRTHQ+RVH+ +G +VGD++YG + +K+L
Sbjct: 251 NKTATLSVLRCKLETGRTHQVRVHLAHIGVPLVGDSVYGAGFRTKALALPDEAARNFACA 310
Query: 215 NRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
RQALHA L HP + L + LP+DI++L
Sbjct: 311 ERQALHAAGLRFEHPSSRKVLSFESPLPEDIAQLC 345
>gi|451823143|ref|YP_007459417.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775943|gb|AGF46984.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 306
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 154/233 (66%), Gaps = 7/233 (3%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ +++ E+++ +I+NK AGLV HP GN SGTL + LL YP L VPRAGIVHRLDKN
Sbjct: 78 VAFEVLEENSDWLIVNKPAGLVTHPGSGNWSGTLLNGLLYRYPELFIVPRAGIVHRLDKN 137
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+M+VA+++KS I+LV QL++ + R+Y+A+V G G IN I R+ +N IKM+
Sbjct: 138 TSGIMIVARTLKSQIYLVRQLQLRFISREYIAIVQGSLLKEGTINKTIGRDINNPIKMSA 197
Query: 147 S-KNFNAKPALTYYERLATGII-NKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+ K + K A+T++ + G+ +++++ I+C L TGRTHQIRVH+ +GH ++GD++Y
Sbjct: 198 ANKVISPKEAVTHFRSIVHGLTPCQRNVTKIKCILDTGRTHQIRVHLSSIGHPLLGDSVY 257
Query: 205 GKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKWI 257
++ I +R LH+ L ++ K N K + +P D+ K++ IKWI
Sbjct: 258 NGQFLS--ICDRPMLHSEILSFVNEKGN-KYTFSSPIPSDMHKVL--DKIKWI 305
>gi|15895383|ref|NP_348732.1| pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|337737331|ref|YP_004636778.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
gi|384458840|ref|YP_005671260.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|15025103|gb|AAK80072.1|AE007712_8 Predicted pseudouridylate synthase, YLYB B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|325509529|gb|ADZ21165.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|336291055|gb|AEI32189.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
Length = 305
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 149/234 (63%), Gaps = 11/234 (4%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRA 77
K E + I LDI+YED +I+++NK+ G+VVHPA GN +GTL + LL L IN V R
Sbjct: 72 KIEAENIPLDIVYEDRDIVVVNKAQGMVVHPAPGNYNGTLVNALLYHCKDLSGINGVLRP 131
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMR 136
GIVHR+DK++SG++VVAK+ ++ +L NQLK H + R Y A+V GI K + G ++ + R
Sbjct: 132 GIVHRIDKDTSGILVVAKNDAAHKNLANQLKEHSMNRVYRAVVEGIIKEDEGTVDKPLAR 191
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+P R+K+ V K + A+T+Y+ L ++ +LI C L+TGRTHQIRVHM ++GH
Sbjct: 192 HPVERVKIAVVKG--GRNAVTHYKVLE----RYRNSTLIECKLETGRTHQIRVHMAYIGH 245
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+VGD LYG K + Q LHA KLG IHP +++ P K+IT
Sbjct: 246 ALVGDPLYGYK-KQRFNLEGQMLHAQKLGFIHPTKGKYMEFEREAPSHFQKIIT 298
>gi|220927321|ref|YP_002502623.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951928|gb|ACL62320.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 337
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 154/267 (57%), Gaps = 27/267 (10%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
+ + P + E+ +I I YED+++I+++K GLVVHPA G+ SGTL + L+
Sbjct: 66 VTVPPARPATPEAEERALI---IPYEDDDLIVIDKPPGLVVHPAPGHDSGTLVNALIAHC 122
Query: 69 PFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMV 120
++ V R GIVHRLDK++SGL+VVAK+ ++ L Q H ++R YLA+V
Sbjct: 123 GASLSGIGGVRRPGIVHRLDKDTSGLLVVAKNDMAHAALSLQFADHGRSGQLERAYLALV 182
Query: 121 WGIPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT-GIINKKHISLIRCN 178
WG+P+ G I+AA+ R+ NR K+ V + + A+T+Y A G+ ++ + L+RC
Sbjct: 183 WGVPEPRAGRIDAALARSDSNREKIAVVRPEKGRHAITHYRTEAVLGV--REPVGLVRCR 240
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL------------IFNRQALHAYKLGL 226
L+TGRTHQIRVH+ GH ++GD YG + RQALHA LG
Sbjct: 241 LETGRTHQIRVHLAHRGHPLLGDATYGAAFRTKAARLEPEARAALDALGRQALHAAVLGF 300
Query: 227 IHPKNNLKLKWRINLPDDISKLITFSG 253
+HP+ N L++ LP D+++L+ G
Sbjct: 301 VHPRTNAFLRFESPLPADLARLVAALG 327
>gi|149190361|ref|ZP_01868634.1| 23S rRNA pseudouridine synthase D [Vibrio shilonii AK1]
gi|148835850|gb|EDL52814.1| 23S rRNA pseudouridine synthase D [Vibrio shilonii AK1]
Length = 324
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 151/254 (59%), Gaps = 18/254 (7%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G ELI ++ + + E + I L+I+YED++II++NK VVHP G GT+ +
Sbjct: 59 VMGGELITVQAELEDE-ERFEAQDIPLNIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLN 117
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL +P + VPRAGIVHRLDK+++GLMVVAK++ + LV L+ + R+Y A+ G
Sbjct: 118 ALLHHFPAIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIG 177
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
GM++ AI R+ R M V N KPA+T+Y R+A ++H + IR L+TG
Sbjct: 178 KMTAGGMVDKAIGRHSTKRTLMAV--NELGKPAVTHY-RVAEHF--REH-TRIRLRLETG 231
Query: 183 RTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKN 231
RTHQIRVHM +L H ++GD+ YG + S+ L F+RQALHA L HP
Sbjct: 232 RTHQIRVHMSYLQHPLLGDSAYGGRARIPRGASEELTHMIRSFDRQALHAVMLKFAHPVT 291
Query: 232 NLKLKWRINLPDDI 245
++ + +PDD+
Sbjct: 292 GEEMTFHAPIPDDM 305
>gi|163856156|ref|YP_001630455.1| ribosomal large subunit pseudouridine synthase D [Bordetella petrii
DSM 12804]
gi|163259884|emb|CAP42185.1| ribosomal large subunit pseudouridine synthase D [Bordetella
petrii]
Length = 324
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 2/224 (0%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ I ++ E + I+++K AGLV HP GN SGTL + LL YP L V RAGIVHRLD
Sbjct: 95 EPIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLD 154
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K++SGLMVVA++ + HLV QL+ + R+Y+A+ G + G ++ I R+ ++M
Sbjct: 155 KDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHGWLPVAGKVDRPIGRDARVPVRM 214
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+V + KPA+T+Y L G ++ + C L+TGRTHQIRVH+ LGH ++ D LY
Sbjct: 215 SVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGRTHQIRVHLASLGHPLLADTLY 274
Query: 205 GKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
G + + RQ LHA L P +R + PDD+ ++
Sbjct: 275 GGRLTAGA--TRQMLHARALHFDDPGGGGPAAFRADPPDDMRQV 316
>gi|406943611|gb|EKD75572.1| hypothetical protein ACD_44C00095G0003 [uncultured bacterium]
Length = 321
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 144/235 (61%), Gaps = 16/235 (6%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+ + + +IYED ++I+NK AG+V HPA G+ GTL + L+ P L ++PRAG++HRLD
Sbjct: 84 QALPVQLIYEDEALLIINKPAGIVTHPAPGHHDGTLVNALMHHCPGLQHLPRAGLIHRLD 143
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
K++SGL+VVAK+++++ L+ L+ ++R+Y A+V G+ G I + R+PH+R ++
Sbjct: 144 KDTSGLLVVAKTLETHFTLIKDLQARRIKREYEAIVKGVLISGGRIETQLGRSPHDRTRI 203
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + K A+T+Y R+ H++L L+TGRTHQIRVHM L H IVGD +Y
Sbjct: 204 AVRR--GGKQAITHY-RVIQRFSAHTHLAL---QLETGRTHQIRVHMAHLRHPIVGDPIY 257
Query: 205 GKK----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G Y+ F RQALHA LGL HP + +W LPDD+ L+
Sbjct: 258 GHHTVSSKLNTPLYTALSEFKRQALHAKNLGLTHPLSQHYCEWTAPLPDDMQHLL 312
>gi|260221244|emb|CBA29613.1| Ribosomal large subunit pseudouridine synthase D [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 335
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 146/258 (56%), Gaps = 15/258 (5%)
Query: 5 GYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
G EL + +KP K E + LD+++ED ++++NK AGLVVHPA GN SGTL +
Sbjct: 78 GEELTVELKPTPQSQAFKPEP--MALDVVHEDEHVLVINKPAGLVVHPAPGNWSGTLLNG 135
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV--- 120
LL P VPRAGIVHRLDK++SGLMVVA+S + LVN + V R+Y A+
Sbjct: 136 LLAYSPHAALVPRAGIVHRLDKDTSGLMVVARSRTAMDALVNAIAAREVSRQYFAIAHKT 195
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKHISLIRCN 178
W +L ++A I R+P NR++M V + + K A T + + I N + +RC
Sbjct: 196 WPWTRLK-EVDAPIGRDPRNRLRMAVVDLVHQSGKEARTDF----SLISNSQVACWVRCI 250
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
L TGRTHQIRVHM +GH +V D +YG + RQALHA +L HP + L++
Sbjct: 251 LHTGRTHQIRVHMAHIGHPLVADAVYGGAVLGEM--TRQALHACRLAFKHPVSGESLEFE 308
Query: 239 INLPDDISKLITFSGIKW 256
P D L G+ +
Sbjct: 309 CGPPSDFMALCAELGLGY 326
>gi|170744872|ref|YP_001773527.1| RluA family pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168199146|gb|ACA21093.1| pseudouridine synthase, RluA family [Methylobacterium sp. 4-46]
Length = 336
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 148/246 (60%), Gaps = 22/246 (8%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHRLD 84
L I+YED+++I+++K AGLVVHPA G+ GTL + L+ ++ V R GIVHRLD
Sbjct: 83 LAIVYEDDDLIVIDKPAGLVVHPAPGHPDGTLVNALIAHCGASLSGIGGVRRPGIVHRLD 142
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPK-LNGMINAAIMRNPH 139
K++SGL+VVAK+ ++ L Q H +++R YLA+VWG+P NG I+AA+ R+
Sbjct: 143 KDTSGLLVVAKNDLAHAGLSLQFADHGRSGMLERAYLALVWGVPAPRNGTIDAALARSER 202
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
NR K+ V + + A+T+Y A + ++ + IRC L+TGRTHQIRVH+ GH ++
Sbjct: 203 NREKIAVVRPEQGRHAVTHYRTEAV-LGAREPVGQIRCRLETGRTHQIRVHLAHRGHPLL 261
Query: 200 GDNLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
GD YG + RQALHA LG +HP+++ L++ LP D+++
Sbjct: 262 GDRTYGAAFRTKAARLDPEAREALDALGRQALHAAVLGFVHPRSHAVLRFESPLPADLAR 321
Query: 248 LITFSG 253
L+ G
Sbjct: 322 LVAALG 327
>gi|103487227|ref|YP_616788.1| pseudouridine synthase RluD [Sphingopyxis alaskensis RB2256]
gi|98977304|gb|ABF53455.1| ribosomal large subunit pseudouridine synthase D [Sphingopyxis
alaskensis RB2256]
Length = 376
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 138/234 (58%), Gaps = 15/234 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
+ L I YED +I+++K AG+VVHPA GNL GT+ + LL ++ V R GIVHR
Sbjct: 142 LDLVIAYEDAHLIVIDKPAGMVVHPAAGNLDGTMVNALLHHCAGQLSGIGGVARPGIVHR 201
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
+DK++SGL+V AK K++ L Q H + R+YLA+ G P NG ++AA+ R+ NR
Sbjct: 202 IDKDTSGLIVAAKHDKAHEGLAKQFAAHSIDRRYLAIATGRPMPANGTVDAALGRSATNR 261
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V K ALT+Y + + +LI C L+TGRTHQ+RVHM +GH +VGD
Sbjct: 262 KKMAVVAAGRGKHALTHYRTVEP----LQGATLIECRLETGRTHQVRVHMAHIGHPLVGD 317
Query: 202 NLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG+ K+ F RQALHA LG IHP ++ LP D+ +LI
Sbjct: 318 PVYGRARKPLSDVLKARNFARQALHAAHLGFIHPVTGNRIALDSELPADMRELI 371
>gi|404498283|ref|YP_006722389.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|418068066|ref|ZP_12705386.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78195880|gb|ABB33647.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|373557678|gb|EHP84072.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 319
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 24/242 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I L I++ED++++++NKSAG+VVHP G GTL + LL L + R GIVHR+
Sbjct: 79 IPLVILHEDSDLVVVNKSAGMVVHPGAGTPGGTLVNALLAHCTDLSGIGGEIRPGIVHRI 138
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRI 142
DK+++G++VVAK+ +S+ L Q + H ++R YLA+V+G PK + G I AI R+P +R+
Sbjct: 139 DKDTTGVLVVAKNDRSHEGLARQFREHTIKRIYLALVFGSPKTDTGRIEGAIGRHPTDRL 198
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M+ K + K A+T+++ LA ++L+R L+TGRTHQIRVH+ GH +VGD
Sbjct: 199 RMS-GKAKHGKHAVTHWKVLA----RYPGMTLLRLRLETGRTHQIRVHLAESGHPLVGDE 253
Query: 203 LYG-------------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG KK + L RQALHA LG IHP + +++ LPDD++++I
Sbjct: 254 VYGGAGRANDLRDPVLKKLVREL--GRQALHAKTLGFIHPASGSYVEFDTELPDDMARII 311
Query: 250 TF 251
T+
Sbjct: 312 TY 313
>gi|374709384|ref|ZP_09713818.1| pseudouridine synthase [Sporolactobacillus inulinus CASD]
Length = 307
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 150/230 (65%), Gaps = 17/230 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I LDI++ED +I++NK G+VVHPA G++SGTL + LL L + R GIVHR+
Sbjct: 78 IPLDIVFEDGSVIVVNKPRGMVVHPAPGHMSGTLVNALLGHCRDLSGINGILRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
D+ +SGL++VAK+ +++ L QLK +RKYLA+V G +P G+I+A I R+ +R
Sbjct: 138 DRETSGLLMVAKTDQAHRSLAKQLKDKSTKRKYLAIVHGNLPHDEGIIDAPIGRSEKDRK 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V++ N+K A+T++ ER + + + + C L+TGRTHQIRVHM ++GH +
Sbjct: 198 KMAVTEK-NSKHAVTHFKVLERFS-------NYTFVACRLETGRTHQIRVHMAYIGHPLA 249
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG + K+L N QALHA +LG IHP ++ + LPDD+++L+
Sbjct: 250 GDPKYGPR--KTLPINGQALHAAELGFIHPVTRQQMLFCAALPDDMARLL 297
>gi|442611511|ref|ZP_21026217.1| Ribosomal large subunit pseudouridine synthase D [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747439|emb|CCQ12279.1| Ribosomal large subunit pseudouridine synthase D [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 325
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 143/238 (60%), Gaps = 18/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK LVVHP GN +GT+ + LL P + +VPRAGIVHR
Sbjct: 78 EAQEITLNIVYEDDDILVINKPMDLVVHPGAGNPNGTVLNALLHHCPEIASVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHI-VQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
LDK+++GLMVVAK+I++ HLV L+ R+Y A+ G GMI I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIQAQTHLVKNLQARENFTREYEAICNGTMTAGGMIEKPIGRHSTKR 197
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V + KPA+T+Y R+A + H L R L+TGRTHQIRVHM +L H +VGD
Sbjct: 198 THMAVHE--MGKPAVTHY-RVAEKF--RAHTRL-RLRLETGRTHQIRVHMAYLNHPLVGD 251
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
LYG K + L F RQALHA +L + HP ++W +P+D+ L
Sbjct: 252 QLYGGRPRPPKNATPELFQMLRDFKRQALHAVRLQIAHPITGEIMRWEAPIPEDMVAL 309
>gi|423711105|ref|ZP_17685425.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395415019|gb|EJF81454.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 334
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 152/255 (59%), Gaps = 26/255 (10%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPR 76
K + I LDI++ED+ +I++NK AGLVVHP GN +GTL + L+ + + + R
Sbjct: 73 KPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCHDSLSGIGGIKR 132
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLNGM-IN 131
GIVHRLDKN+SG+MVVAK+ ++ L Q H + R+Y A++WG P N + I+
Sbjct: 133 PGIVHRLDKNTSGVMVVAKNDLAHQSLSAQFSDHGRTSALDRRYHALIWGSPSRNVLTID 192
Query: 132 AAIMRNPHNRIKMTV--SKNFNAKPALTY---YERLATGIINKKHISLIRCNLKTGRTHQ 186
A++ R+PHNR K V S++ +A+ A+T+ E+ T SL+ C L+TGRTHQ
Sbjct: 193 ASLGRSPHNRTKQAVVHSQSSHARHAITHISLLEKYGTLADTTSFASLLECRLETGRTHQ 252
Query: 187 IRVHMQWLGHGIVGDNLYGKKY-SKSLI-----------FNRQALHAYKLGLIHPKNNLK 234
IRVHM +GH +VGD +YG + +KS + FNRQALHA L HP
Sbjct: 253 IRVHMAHIGHPLVGDTVYGNAFKTKSNVLNPIIRNAIDQFNRQALHAVSLTFEHPATGKI 312
Query: 235 LKWRINLPDDISKLI 249
+ + LP D+++LI
Sbjct: 313 MSFSSPLPHDMAELI 327
>gi|406036949|ref|ZP_11044313.1| ribosomal large subunit pseudouridine synthase D [Acinetobacter
parvus DSM 16617 = CIP 108168]
Length = 349
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 150/242 (61%), Gaps = 23/242 (9%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
++ + I L+I+YED++II++NK G+VVHP GN +GTL + LL P L + RAG+VH
Sbjct: 107 SQPENIPLNIVYEDDDIIVINKEVGMVVHPGAGNPTGTLVNALLYHAPKLAELSRAGLVH 166
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
R+DK++SGL+VVAK++++ L QL V R Y +V+G G I+ I R+P +R
Sbjct: 167 RIDKDTSGLLVVAKNLEAQFSLSKQLAKKTVYRVYDLVVYGNIIAGGTIDEPIKRHPVDR 226
Query: 142 IKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
+KM + + A+T+Y ER + + I+ L+TGRTHQIRVH +LGHG+
Sbjct: 227 VKMAILP--GGRDAVTHYNVKERF-------RDFTRIQAQLETGRTHQIRVHFSYLGHGL 277
Query: 199 VGDNLYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
+GD +Y + S++LI F RQALHA KLGL+HP+ ++ + P+D ++
Sbjct: 278 IGDPVYVNRVRFPAGASEALIDMLRSFKRQALHAAKLGLVHPRTGEEMMFEAPWPEDFTQ 337
Query: 248 LI 249
L+
Sbjct: 338 LV 339
>gi|301632247|ref|XP_002945202.1| PREDICTED: ribosomal large subunit pseudouridine synthase D-like
[Xenopus (Silurana) tropicalis]
Length = 341
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 142/229 (62%), Gaps = 11/229 (4%)
Query: 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMV 92
+ED ++++NK AGLVVHPA G+ SGTL + L+ P + +PRAGIVHRLDK++SGLMV
Sbjct: 109 FEDAHLLVVNKPAGLVVHPAPGHWSGTLLNGLMGRDPKAMLLPRAGIVHRLDKDTSGLMV 168
Query: 93 VAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSK-- 148
VA+ + LV + V+R+YLA+ + + G+ ++AA+ R+P NR++M V
Sbjct: 169 VARERTTMDALVRLIAQRQVRRQYLALGHCVWRGGGLRTVDAALGRDPRNRLRMAVVDLA 228
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY 208
KPA T +E LA + L+RC L TGRTHQIRVHM +GH +V D LYG
Sbjct: 229 QHAGKPARTDFEYLAGNDLG----CLVRCTLHTGRTHQIRVHMLSMGHPLVADVLYGGSA 284
Query: 209 SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK-LITFSGIKW 256
+ L RQALHA +L +HP L++ LP+D+ + L+ + ++W
Sbjct: 285 AAGLA--RQALHADRLAFVHPVTGQALEFHAPLPEDMQQALVQWGLVQW 331
>gi|261212185|ref|ZP_05926471.1| ribosomal large subunit pseudouridine synthase D [Vibrio sp. RC341]
gi|262401594|ref|ZP_06078160.1| ribosomal large subunit pseudouridine synthase D [Vibrio sp. RC586]
gi|260838793|gb|EEX65444.1| ribosomal large subunit pseudouridine synthase D [Vibrio sp. RC341]
gi|262352011|gb|EEZ01141.1| ribosomal large subunit pseudouridine synthase D [Vibrio sp. RC586]
Length = 324
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 154/259 (59%), Gaps = 18/259 (6%)
Query: 1 MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
M + G E+I+++ + + E + + L+I+YED++II++NK VVHP G T+
Sbjct: 57 MKVMGGEVIVVQAELEDE-QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADSTV 115
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL YP + VPRAGIVHRLDK+++GLMVVAK++ + HLV L+ V R+Y A+V
Sbjct: 116 LNALLFHYPPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVRALQKRDVTREYEAIV 175
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
G GMI+ I R+ R M+VS K A+T+Y R+A ++H L R L+
Sbjct: 176 IGTMTAGGMIDKPIGRHSTKRTLMSVSP--MGKHAVTHY-RVAEHF--REHTRL-RLRLE 229
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHP 229
TGRTHQIRVHM +L H ++GD YG K S+ L F+RQALHA L HP
Sbjct: 230 TGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGASEELTEMIRGFDRQALHAVMLKFEHP 289
Query: 230 KNNLKLKWRINLPDDISKL 248
+L++ +PDD+ ++
Sbjct: 290 ITGEELEFHAPVPDDMVEM 308
>gi|417844614|ref|ZP_12490655.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M21639]
gi|341956573|gb|EGT82994.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M21639]
Length = 324
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDKN++GLM+VAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKNTTGLMIVAKTIPAQTKLVRNLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|169350183|ref|ZP_02867121.1| hypothetical protein CLOSPI_00927 [Clostridium spiroforme DSM 1552]
gi|169292966|gb|EDS75099.1| pseudouridine synthase, RluA family [Clostridium spiroforme DSM
1552]
Length = 306
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 146/225 (64%), Gaps = 11/225 (4%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRAGI 79
E + I L+++YED ++I+++K G++VHP+ G SGTL + LL + + V R GI
Sbjct: 73 EAEDIPLNVVYEDKDVIVIDKPTGMIVHPSPGITSGTLVNALLFHCKDLSGINGVNRPGI 132
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP 138
VHR+DK +SGL++VAK+ ++ L QLK H V R+Y+A+V G IP + G I+A I RNP
Sbjct: 133 VHRIDKETSGLLMVAKNDIAHRFLSEQLKDHSVTRRYVALVHGLIPHVQGKIDAPIGRNP 192
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
++R M V+KN N+K A+T + T + K++SLI C L+TGRTHQIRVHM ++G+ +
Sbjct: 193 NDRQSMCVTKN-NSKNAITNF----TVLKRYKNMSLIECRLETGRTHQIRVHMSYIGYPV 247
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
GD YG Y K + Q LHA KLG IHP +++ LPD
Sbjct: 248 YGDPKYG--YRKDDCSHGQFLHAKKLGFIHPTTKEYMEFESELPD 290
>gi|145297342|ref|YP_001140183.1| ribosomal large subunit pseudouridine synthase D [Aeromonas
salmonicida subsp. salmonicida A449]
gi|418362094|ref|ZP_12962738.1| ribosomal large subunit pseudouridine synthase D [Aeromonas
salmonicida subsp. salmonicida 01-B526]
gi|142850114|gb|ABO88435.1| ribosomal large subunit pseudouridine synthase D [Aeromonas
salmonicida subsp. salmonicida A449]
gi|356686729|gb|EHI51322.1| ribosomal large subunit pseudouridine synthase D [Aeromonas
salmonicida subsp. salmonicida 01-B526]
Length = 326
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 140/241 (58%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 DAQDIALNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPDIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G ++A I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPTQRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V N +P++T+Y +++K H L R L+TGRTHQIRVHM + H +V
Sbjct: 198 HMAVVP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMSHIKHPLV 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG + + L FNRQALHA L L HP ++W P D+ L
Sbjct: 249 GDPAYGGRLRPLRNATPELTLALRNFNRQALHATMLQLAHPITGEVMQWHSPTPQDMLDL 308
Query: 249 I 249
+
Sbjct: 309 M 309
>gi|395780276|ref|ZP_10460743.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395419543|gb|EJF85843.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 337
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 152/255 (59%), Gaps = 26/255 (10%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPR 76
K + I LDI++ED+ +I++NK AGLVVHP GN +GTL + L+ + + + R
Sbjct: 73 KPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCHDSLSGIGGIKR 132
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLNGM-IN 131
GIVHRLDKN+SG+MVVAK+ ++ L Q H + R+Y A++WG P N + I+
Sbjct: 133 PGIVHRLDKNTSGVMVVAKNDLAHQSLSAQFSDHGRTSALDRRYHALIWGSPSRNVLTID 192
Query: 132 AAIMRNPHNRIKMTV--SKNFNAKPALTY---YERLATGIINKKHISLIRCNLKTGRTHQ 186
A++ R+PHNR K V S++ +A+ A+T+ E+ T SL+ C L+TGRTHQ
Sbjct: 193 ASLGRSPHNRTKQAVVHSQSSHARHAITHISLLEKYGTLADTTSFASLLECRLETGRTHQ 252
Query: 187 IRVHMQWLGHGIVGDNLYGKKY-SKSLI-----------FNRQALHAYKLGLIHPKNNLK 234
IRVHM +GH +VGD +YG + +KS + FNRQALHA L HP
Sbjct: 253 IRVHMAHIGHPLVGDTVYGNAFKTKSNVLNPIIRNAIDQFNRQALHAVSLTFEHPATGKI 312
Query: 235 LKWRINLPDDISKLI 249
+ + LP D+++LI
Sbjct: 313 MSFSSPLPHDMAELI 327
>gi|430377097|ref|ZP_19431230.1| ribosomal large subunit pseudouridine synthase D [Moraxella macacae
0408225]
gi|429540234|gb|ELA08263.1| ribosomal large subunit pseudouridine synthase D [Moraxella macacae
0408225]
Length = 337
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 143/243 (58%), Gaps = 28/243 (11%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L +IYED+ ++++NK AG+VVH GN +GTL + LL YP +PRAG+VHR+DK+
Sbjct: 97 IDLHVIYEDDSVLVINKPAGMVVHAGAGNWTGTLVNALLYHYPNSRLLPRAGLVHRIDKD 156
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL---NGMINAAIMRNPHNRIK 143
++GLMV+AK KS +HL+NQLK V R Y A+V + I +I R+P R K
Sbjct: 157 TTGLMVIAKDHKSQLHLINQLKNKSVYRHYQALVLATHSELAKHRTITGSIARHPVVRTK 216
Query: 144 MTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
M V KPA+T+ E++ G +SL+ L+TGRTHQIRVH LG +VG
Sbjct: 217 MAVIA--TGKPAITHLDKIEQICDG------VSLVSIRLETGRTHQIRVHFSNLGFALVG 268
Query: 201 DNLYGKKYSKSLI--------------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
D +YG +++ FNRQALHAY+LG IHPK ++ +PDD+
Sbjct: 269 DPVYGSDRRMAMLAKQLTDDEKIQLNAFNRQALHAYELGFIHPKTGESRLFQAPMPDDLQ 328
Query: 247 KLI 249
LI
Sbjct: 329 LLI 331
>gi|190571305|ref|YP_001975663.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|213018702|ref|ZP_03334510.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
gi|190357577|emb|CAQ55016.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212995653|gb|EEB56293.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
Length = 315
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 147/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP----RAGIVHR 82
IKLDI+YED++II+L+K + L VHP G + TL + ++ L +P R GIVHR
Sbjct: 79 IKLDIVYEDDDIIVLSKQSRLTVHPGAGTNNDTLLNAVI---AHLGKIPYTNTRPGIVHR 135
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNR 141
LDK++SGLMV+AK+ +S+ L L ++R+YLA++WG +P L G + I N+
Sbjct: 136 LDKDTSGLMVIAKNEQSHSFLSELLSNRKIKREYLAVIWGALPNLQGTVKTHIAPKRSNK 195
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
M V+K K A+T+Y II + SL++C L+TGRTHQIRVHM +GH +VGD
Sbjct: 196 EMMCVTKTA-GKLAITHYS--VKKIIGQA--SLVKCTLETGRTHQIRVHMSHIGHSVVGD 250
Query: 202 NLYGKKYSKSLI----------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YGK SKS FNRQALHA+ LGL HPK+ +++ +LP D+ LI
Sbjct: 251 QVYGKNSSKSEKHAKNSDFIRNFNRQALHAHTLGLYHPKSKEYIEFVSDLPQDMQVLI 308
>gi|417857857|ref|ZP_12502914.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens F2]
gi|338823861|gb|EGP57828.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens F2]
Length = 340
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 155/272 (56%), Gaps = 39/272 (14%)
Query: 10 IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---- 65
I+ P+ K E I LD+ YED ++I+L K AGLVVHP GN +GTL + L+
Sbjct: 73 IVMPEPEDPEPKGED--IPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCG 130
Query: 66 EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVW 121
+ + V R GIVHRLDK +SG+MVVAK+ ++ HL Q H ++R Y A+VW
Sbjct: 131 DSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVW 190
Query: 122 GIPK-LNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYYERLATGIINKKH------- 171
G P+ L G I+AA+ R +R K V +A+ A+T+YE ++ + H
Sbjct: 191 GRPRTLRGTIDAALGRGA-DRTKRAVKHEDRDDAREAITHYE-----VMERFHERPDASC 244
Query: 172 -ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FNRQA 218
S++ C L+TGRTHQIRVHM +GH ++GD YG + ++S + F RQA
Sbjct: 245 LASMVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFRTKANLLEEPARSTVNRFPRQA 304
Query: 219 LHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
LHAY L HP+ +++ ++PDD+ +LIT
Sbjct: 305 LHAYLLAFEHPRTGEVMEFETDMPDDMEELIT 336
>gi|342903736|ref|ZP_08725542.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M21621]
gi|373466576|ref|ZP_09557890.1| ribosomal large subunit pseudouridine synthase D [Haemophilus sp.
oral taxon 851 str. F0397]
gi|417842600|ref|ZP_12488682.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M21127]
gi|341951438|gb|EGT78010.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M21127]
gi|341954563|gb|EGT81039.1| Ribosomal large subunit pseudouridine synthase D [Haemophilus
haemolyticus M21621]
gi|371760358|gb|EHO49047.1| ribosomal large subunit pseudouridine synthase D [Haemophilus sp.
oral taxon 851 str. F0397]
Length = 324
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|381158838|ref|ZP_09868071.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
gi|380880196|gb|EIC22287.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
Length = 317
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 139/234 (59%), Gaps = 16/234 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +++ED ++++NK AGLVVHP G GTL + LL P L +PRAGIVHRLDK+
Sbjct: 80 IDFALVHEDAHLLVINKPAGLVVHPGAGQPDGTLLNALLHHNPELAALPRAGIVHRLDKD 139
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMVVAKS+ ++ LV QL+ +V R Y A+V G G ++ I R+P R KM V
Sbjct: 140 TSGLMVVAKSLIAHQSLVTQLQARLVHRDYRALVRGDLISGGSVDQPIGRHPQARTKMAV 199
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ +PA+++Y L H +L+ L+TGRTHQIRVHM L H +VGD +Y +
Sbjct: 200 VA--SGRPAISHYRVLK----RFGHCTLLGVRLETGRTHQIRVHMAHLRHPLVGDPVYAR 253
Query: 207 ---------KYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
+++L F RQALHA L L HP + L W I + D ++L+T
Sbjct: 254 ARQPFPAHAPAAEALRNFPRQALHAIGLALEHPASGETLSWEIPMAPDFAQLLT 307
>gi|452752001|ref|ZP_21951745.1| Ribosomal large subunit pseudouridine synthase D [alpha
proteobacterium JLT2015]
gi|451960521|gb|EMD82933.1| Ribosomal large subunit pseudouridine synthase D [alpha
proteobacterium JLT2015]
Length = 319
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 146/262 (55%), Gaps = 20/262 (7%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ +G L + P + E + I LDI+YED +I+++K AGLVVHPA GN GTL
Sbjct: 60 VTAGERLTVDVPAPTP--SAAEPQDIPLDIVYEDAGLIVVDKPAGLVVHPAAGNRDGTLV 117
Query: 62 DNLL-----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116
+ LL E+ + V R GIVHR+DK++SGL+V AK+ +++ L Q H V R+Y
Sbjct: 118 NALLHHCGGELS-GIGGVTRPGIVHRIDKDTSGLLVAAKTAHAHMALAAQFAAHSVGRRY 176
Query: 117 LAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLI 175
LA+ G+P + + R+P NR KM V + K A+T+Y L + +LI
Sbjct: 177 LAITRGVPVPPAARVEGNVGRSPKNRKKMAVLDDGRGKAAVTHYRTLRA----LEDAALI 232
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS-------LIFNRQALHAYKLGLIH 228
C L+TGRTHQ+RVHM G ++GD LYG + +S L F RQALHA L H
Sbjct: 233 ECRLETGRTHQVRVHMAAQGFPLLGDPLYGGRGVRSQSALLKRLGFARQALHAAILQFEH 292
Query: 229 PKNNLKLKWRINLPDDISKLIT 250
P L + LP D+ +L++
Sbjct: 293 PDRKEILTFESPLPADMQELVS 314
>gi|145633599|ref|ZP_01789327.1| SfhB [Haemophilus influenzae 3655]
gi|229847288|ref|ZP_04467391.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae 7P49H1]
gi|144985805|gb|EDJ92419.1| SfhB [Haemophilus influenzae 3655]
gi|229809831|gb|EEP45554.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae 7P49H1]
Length = 324
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|264679430|ref|YP_003279337.1| pseudouridine synthase [Comamonas testosteroni CNB-2]
gi|262209943|gb|ACY34041.1| pseudouridine synthase, RluA family [Comamonas testosteroni CNB-2]
Length = 352
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 143/240 (59%), Gaps = 14/240 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + + L ++YED +++++NK AGLVVHPA GN +GTL + LL VPRAGIVHR
Sbjct: 115 QPETMDLQVVYEDEDLLVINKPAGLVVHPAPGNWTGTLLNGLLARDEKARQVPRAGIVHR 174
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---WGIPKLNGMINAAIMRNPH 139
LDK++SGLMVVA++ + L+ + V R+YLA+ WG K + ++A I R+P
Sbjct: 175 LDKDTSGLMVVARNRSTMDALIKMIAAREVSRQYLALAHKQWGSRK-HREVDAPIGRDPR 233
Query: 140 NRIKMTVSKNFNAKP---ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
NR++M V + N P A T ++ L + SL+RC L TGRTHQIRVHM LGH
Sbjct: 234 NRLRMAVV-DLNLHPGKQARTDFDLLDGDAAH----SLVRCTLHTGRTHQIRVHMASLGH 288
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
++ D LYG + L RQALHA++L HP L LP D++ + G+++
Sbjct: 289 PLIADTLYGGQPEGGL--ERQALHAFRLAFEHPVTKKPLVHYAPLPQDMAGALDLWGLRY 346
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040287|gb|ACT57083.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 164/274 (59%), Gaps = 30/274 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++ G +I P ++ I LDI+YED++II++NK AGLVVHPA GN +GTL
Sbjct: 65 VVPGDSFLITVPAAQKL--NIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLV 122
Query: 62 DNLL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ LL + V R GIVHRLDK+++G+MVVAK+ ++ L Q H ++
Sbjct: 123 NALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLK 182
Query: 114 RKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVS--KNFNAKPALTYYERLATGIINKK 170
R Y AMVWGIP +G+INA + R NR++ V + A A+T+Y+ + I NK
Sbjct: 183 RAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIE--IYNKN 240
Query: 171 H---ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLIFN-- 215
+SL++C+L+TGRTHQIRVHM G+ ++GD LYGK + +KS I +
Sbjct: 241 SNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLA 300
Query: 216 RQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
RQALHA+ L HP+NN + +++ +P+D+ +I
Sbjct: 301 RQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVI 334
>gi|110833337|ref|YP_692196.1| pseudouridylate synthase [Alcanivorax borkumensis SK2]
gi|110646448|emb|CAL15924.1| pseudouridylate synthase [Alcanivorax borkumensis SK2]
Length = 323
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 150/239 (62%), Gaps = 18/239 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I LD++Y+D+++I++NK GLVVHPA G+ GTL + LL + L ++PRAGIVHR
Sbjct: 81 QPQSIDLDVVYQDDDLIVINKPTGLVVHPAAGHADGTLLNGLLHLDERLNSLPRAGIVHR 140
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD++++GLMVVA+S++++ LV QL+ + R+Y A+ G+ G ++A + R+P +R
Sbjct: 141 LDRDTTGLMVVARSLEAHQSLVAQLQDKSLFRQYEAIAVGVMTGGGKVDAPMGRHPVDRK 200
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
K V K K A+T+Y ++++ + + I+ L+TGRTHQIRVHM + +VGD
Sbjct: 201 KQAVVKT-GGKNAVTHYR-----VLDRYRAHTRIQVQLETGRTHQIRVHMAHRNYPLVGD 254
Query: 202 NLYGKKYSKSL-----------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LYG + + F RQALHA KLGLIHP +++ LP D++ LI
Sbjct: 255 PLYGGRLKQPAGATEALRQALHKFPRQALHARKLGLIHPARGEYCEFQAELPADMTSLI 313
>gi|395765671|ref|ZP_10446265.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
gi|395411225|gb|EJF77759.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
Length = 334
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 149/251 (59%), Gaps = 26/251 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ I LDI++ED+ +I++NK AGLVVHP GN SGTL + L+ E + + R GIV
Sbjct: 77 EAIALDILFEDDHVIVINKPAGLVVHPGNGNWSGTLVNALIYHCGESLSGIGGIKRPGIV 136
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMINAAIM 135
HRLDKN++G+MVVAK+ ++ L Q H + R+Y A++WG P N I+AA+
Sbjct: 137 HRLDKNTTGVMVVAKNDLAHKSLSAQFSDHGRTSALDRRYHALIWGSPNRNVWTIDAALG 196
Query: 136 RNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
R+PHNR K V +K+ +A+ A+T++ E+ T SL+ C L+TGRTHQIRVH
Sbjct: 197 RSPHNRTKQAVVHNKSPHARHAITHFSLLEKYGTFTDTTSFASLLECRLETGRTHQIRVH 256
Query: 191 MQWLGHGIVGDNLYGKKY-SKSLIF-----------NRQALHAYKLGLIHPKNNLKLKWR 238
M +GH +VGD +YG + +KS F NRQALHA L HP + +
Sbjct: 257 MAHIGHPLVGDTVYGNAFKTKSNTFNPIIKNAIDQLNRQALHATSLTFEHPATGEIMSFS 316
Query: 239 INLPDDISKLI 249
LP D+ +LI
Sbjct: 317 SPLPQDMIELI 327
>gi|421495518|ref|ZP_15942799.1| ribosomal large subunit pseudouridine synthase D [Aeromonas media
WS]
gi|407185457|gb|EKE59233.1| ribosomal large subunit pseudouridine synthase D [Aeromonas media
WS]
Length = 326
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 138/237 (58%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGIVHRLDK+
Sbjct: 82 IDLNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPGIAEVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I + HLV L+ + R+Y A+ G G ++A I R+P R M V
Sbjct: 142 TTGLMVVAKTIPAQTHLVEALQARQITREYEAVAIGHMTAGGTVDAPIGRHPTQRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
N +P++T+Y +++K H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 202 VP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMAHIKHPLVGDPA 252
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG + + L FNRQALHA L L HP ++W P D+ L+
Sbjct: 253 YGGRLRLLRNATPELTLALRNFNRQALHATMLKLAHPITGEVMEWHSATPQDMLDLM 309
>gi|386820779|ref|ZP_10107995.1| pseudouridine synthase, RluA family [Joostella marina DSM 19592]
gi|386425885|gb|EIJ39715.1| pseudouridine synthase, RluA family [Joostella marina DSM 19592]
Length = 345
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 150/255 (58%), Gaps = 39/255 (15%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP-----RAGIVH 81
I LD++YED+ ++++NKSAG+VVHP GN SGTL + L IY F N+P R G+VH
Sbjct: 94 IPLDVVYEDDTLLVVNKSAGMVVHPGHGNYSGTLINAL--IYHFE-NLPMNSNERPGLVH 150
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHN 140
R+DK++SGL+VVAK+ ++ HL Q +R+Y+A+VWG I + G + I R+P N
Sbjct: 151 RIDKDTSGLLVVAKTEEALAHLSKQFFNKTSEREYVALVWGNIEEEEGTVEGHIGRHPKN 210
Query: 141 RIKMTV-SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R++MTV + N K A+T++ ER +++L+ C L+TGRTHQIR HM+++GH
Sbjct: 211 RLQMTVFPEGDNGKEAITHFKVLERFG-------YVTLVSCKLETGRTHQIRAHMKYIGH 263
Query: 197 GIVGDNLYG----------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINL 241
+ D YG KY + + I RQALHA LG HP L + +
Sbjct: 264 TLFNDERYGGEKILKGTTFSKYKQFVENCFKILPRQALHAKTLGFEHPVTGKFLSFDTEI 323
Query: 242 PDDISKLITFSGIKW 256
P+D+ + I KW
Sbjct: 324 PEDMQECIE----KW 334
>gi|168186171|ref|ZP_02620806.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
gi|169295643|gb|EDS77776.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
Length = 304
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 148/221 (66%), Gaps = 11/221 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
IKL+IIYED ++I+++K G+VVHP GN SGTL + LL L ++ R GIVHR+
Sbjct: 78 IKLNIIYEDEDVIVIDKPQGMVVHPGAGNYSGTLVNGLLYHCDSLSSINGDVRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRI 142
DK++SG++VVAK+ ++I L QLK H ++R+Y+A+V GI K + G+I+A + RNP +RI
Sbjct: 138 DKDTSGVLVVAKNDSAHIILSEQLKEHSMKREYIALVEGIIKNDEGIIDAPLGRNPKDRI 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
K V + N K A+T+Y L NK +L++C L+TGRTHQIRVHM + H +VGD
Sbjct: 198 KRAVVR--NGKSAVTHYNVLRR--FNKN--TLVKCILETGRTHQIRVHMAHINHPLVGDP 251
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
+YG + + N Q LHA KLG IHP + ++++ LP+
Sbjct: 252 MYGFRKQR-FKLNGQMLHARKLGFIHPSSKKYMEFQSELPN 291
>gi|209886260|ref|YP_002290117.1| ribosomal large subunit pseudouridine synthase D [Oligotropha
carboxidovorans OM5]
gi|209874456|gb|ACI94252.1| ribosomal large subunit pseudouridine synthase D [Oligotropha
carboxidovorans OM5]
Length = 366
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 146/245 (59%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI+YED++II+L+K GLVVHPA G+ +GTL + L+ ++ V R GIVHR
Sbjct: 116 IPLDIVYEDDDIIVLDKQRGLVVHPAAGHENGTLVNALIAHCGASLSGIGGVKRPGIVHR 175
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMV+AK+ ++ L Q H ++R YLA VWG+P + G I+ I R+
Sbjct: 176 LDKDTTGLMVIAKNDHAHQSLTAQFADHGRTGELRRGYLAFVWGVPARPRGTIDQPIDRH 235
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
P R KM V + + A+T++E L + G K +L+ C L+TGRTHQIRVH+ G
Sbjct: 236 PFAREKMAV--RASGRQAITHWEMLESFAGRDGKPLAALLACQLETGRTHQIRVHLSHAG 293
Query: 196 HGIVGDNLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD++YG + + RQALHAY L + HP L+W+ LP+
Sbjct: 294 HPLIGDDVYGSGFRTKVNQLAEPAKIAVTTLGRQALHAYLLQIEHPTTGEVLEWQSELPE 353
Query: 244 DISKL 248
D++ L
Sbjct: 354 DLAHL 358
>gi|428305379|ref|YP_007142204.1| ribosomal large subunit pseudouridine synthase D [Crinalium
epipsammum PCC 9333]
gi|428246914|gb|AFZ12694.1| ribosomal large subunit pseudouridine synthase D [Crinalium
epipsammum PCC 9333]
Length = 331
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 140/215 (65%), Gaps = 13/215 (6%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF--LINVPRAG 78
KT+ + I LDI+YED+ ++I+NK AGLVVHPA G+ +GTL + LL P + V R G
Sbjct: 97 KTQAENIPLDILYEDDSLLIVNKPAGLVVHPAAGHETGTLVNALLAHCPLSEIGGVQRPG 156
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRN 137
IVHRLDK+++G + +AK+ +++ HL QLK R+YL +V+G PK + G ++A I R+
Sbjct: 157 IVHRLDKDTTGAIAIAKTDQAHQHLQAQLKAKTACREYLGVVYGSPKTDSGSVDAPIGRH 216
Query: 138 PHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194
P +R KM V + +PA+T++ ERL + +L+ L+TGRTHQIRVH +
Sbjct: 217 PVDRKKMAVVAEASGRPAVTHWRVKERLG-------NYTLLHFQLETGRTHQIRVHSTHI 269
Query: 195 GHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHP 229
GH IVGD +Y ++S + QALHA++L L HP
Sbjct: 270 GHPIVGDPVYSSRHSVGVNLTGQALHAWRLRLQHP 304
>gi|52080148|ref|YP_078939.1| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646073|ref|ZP_08000303.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|404489036|ref|YP_006713142.1| RNA-pseudouridine synthase YlyB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423682090|ref|ZP_17656929.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
gi|52003359|gb|AAU23301.1| Pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348027|gb|AAU40661.1| putative RNA-pseudouridine synthase YlyB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317391823|gb|EFV72620.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|383438864|gb|EID46639.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
Length = 304
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 149/228 (65%), Gaps = 13/228 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
+ LDI YED +++++NK G+VVHPA G+L+GTL + L+ L IN V R GIVHR+
Sbjct: 78 MDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCDDLSGINGVMRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK+ ++ LVNQL V RKY A+V G IP +G I+A I R+ +R
Sbjct: 138 DKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTALVHGVIPHDHGTIDAPIGRDKKDRQ 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
MTV++ N K A+T++E +I + +++ C L+TGRTHQIRVHM+++G + GD
Sbjct: 198 SMTVTRE-NGKHAVTHFE-----VIERFDDFTVVECQLETGRTHQIRVHMKYIGFPLAGD 251
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K K++ FN Q LHA LG HP+ +++ LPDD+ L+
Sbjct: 252 PKYGPK--KTVDFNGQVLHAGVLGFDHPRTGEYVEFEAPLPDDMKNLL 297
>gi|405377633|ref|ZP_11031573.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397325899|gb|EJJ30224.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 341
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 155/269 (57%), Gaps = 30/269 (11%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
YE+I+ +P+ + + I LDI+YED ++I+++K AGLVVHP GN +GTL + L+
Sbjct: 71 YEIILPEPEDP----APKGEDIPLDILYEDEDVIVISKPAGLVVHPGPGNWTGTLVNALI 126
Query: 66 ----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYL 117
+ + V R GIVHRLDK+++G+MVVAK+ ++ HL Q H ++R Y
Sbjct: 127 YHCGDTLSGIGGVRRPGIVHRLDKDTTGVMVVAKNDMAHRHLSLQFADHGRTMPLERAYQ 186
Query: 118 AMVWGIPK-LNGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYE---RLATGIINKKH 171
A+VWG P+ L+G I+A + R +R + V + N +A A+T+YE R
Sbjct: 187 AIVWGRPRSLSGTIDAPLGRATGDRTRRAVKRPENESADEAITHYEVLERFHESPDASAL 246
Query: 172 ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL------------IFNRQAL 219
SL+ C+L+TGRTHQIRVHM +GH ++GD +YG + F+RQAL
Sbjct: 247 ASLVECHLETGRTHQIRVHMAHIGHPLLGDAVYGAGFKTKANLLPDEARKVVKAFDRQAL 306
Query: 220 HAYKLGLIHPKNNLKLKWRINLPDDISKL 248
HAY L HP+ + + + LP D+ +L
Sbjct: 307 HAYMLQFEHPRTGEVMHFEVPLPGDMVEL 335
>gi|375335751|ref|ZP_09777095.1| ribosomal large subunit pseudouridine synthase D
[Succinivibrionaceae bacterium WG-1]
Length = 329
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 143/240 (59%), Gaps = 16/240 (6%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
++ + I L++I+ED+++++++K AGLVVHP G GT+ + LL YP ++PRAGIVH
Sbjct: 77 SKPQDIPLNVIFEDDDLLVIDKPAGLVVHPGAGCPDGTVMNGLLHRYPNSKDLPRAGIVH 136
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLDK++SGLMV+AKS+++ L + H V R+Y A+ G G ++ I R+P NR
Sbjct: 137 RLDKDTSGLMVIAKSLRAVHKLTKAISRHEVVREYEAIAIGHMTAGGTVDKPIGRHPTNR 196
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
I M+V K A+T+Y L + H L R L+TGRTHQIRVHM ++ H +VGD
Sbjct: 197 IMMSVCPEGMGKEAITHYRVLEK---FRAHTRL-RLRLETGRTHQIRVHMAYIKHPLVGD 252
Query: 202 NLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ + F RQALHA L HP +L + ++P D+ LI
Sbjct: 253 PVYGGKRSRFIPNATPEFTKIINTFPRQALHAAMLEFEHPFTGEQLSFSSDIPQDMVDLI 312
>gi|337740192|ref|YP_004631920.1| ribosomal large subunit pseudouridine synthase D [Oligotropha
carboxidovorans OM5]
gi|386029209|ref|YP_005949984.1| ribosomal large subunit pseudouridine synthase D [Oligotropha
carboxidovorans OM4]
gi|336094277|gb|AEI02103.1| ribosomal large subunit pseudouridine synthase D [Oligotropha
carboxidovorans OM4]
gi|336097856|gb|AEI05679.1| ribosomal large subunit pseudouridine synthase D [Oligotropha
carboxidovorans OM5]
Length = 351
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 146/245 (59%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI+YED++II+L+K GLVVHPA G+ +GTL + L+ ++ V R GIVHR
Sbjct: 101 IPLDIVYEDDDIIVLDKQRGLVVHPAAGHENGTLVNALIAHCGASLSGIGGVKRPGIVHR 160
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMV+AK+ ++ L Q H ++R YLA VWG+P + G I+ I R+
Sbjct: 161 LDKDTTGLMVIAKNDHAHQSLTAQFADHGRTGELRRGYLAFVWGVPARPRGTIDQPIDRH 220
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
P R KM V + + A+T++E L + G K +L+ C L+TGRTHQIRVH+ G
Sbjct: 221 PFAREKMAV--RASGRQAITHWEMLESFAGRDGKPLAALLACQLETGRTHQIRVHLSHAG 278
Query: 196 HGIVGDNLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD++YG + + RQALHAY L + HP L+W+ LP+
Sbjct: 279 HPLIGDDVYGSGFRTKVNQLAEPAKIAVTTLGRQALHAYLLQIEHPTTGEVLEWQSELPE 338
Query: 244 DISKL 248
D++ L
Sbjct: 339 DLAHL 343
>gi|408374169|ref|ZP_11171859.1| pseudouridylate synthase [Alcanivorax hongdengensis A-11-3]
gi|407766054|gb|EKF74501.1| pseudouridylate synthase [Alcanivorax hongdengensis A-11-3]
Length = 325
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 150/241 (62%), Gaps = 18/241 (7%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80
+ + + I+L ++YED++++++NK AGLVVHPA G+ GTL + LL L ++PRAGIV
Sbjct: 79 EDQPQSIQLQVVYEDDDLLVINKPAGLVVHPAAGHADGTLLNGLLHHDERLNSLPRAGIV 138
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHN 140
HRLD++++GLMVVA+S++++ LV QL+ + R+Y A+ G+ G ++ + R+P +
Sbjct: 139 HRLDRDTTGLMVVARSLEAHQSLVAQLQDKSLFRQYEAIAVGVMTGGGKVDKPLGRHPVD 198
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R K V K A+T+Y +I++ + + I+ L+TGRTHQIRVHM + + +V
Sbjct: 199 RKKQAVVAQ-GGKEAVTHYR-----VIDRYRAHTRIQVRLETGRTHQIRVHMAHIRYPLV 252
Query: 200 GDNLYGKKYSKSL-----------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG + + F RQALHA KLGLIHP + ++ LPDD+ L
Sbjct: 253 GDPLYGGRLKQPAGATEALREALRRFPRQALHARKLGLIHPASGEYCEFEAPLPDDMQAL 312
Query: 249 I 249
I
Sbjct: 313 I 313
>gi|188580214|ref|YP_001923659.1| RluA family pseudouridine synthase [Methylobacterium populi BJ001]
gi|179343712|gb|ACB79124.1| pseudouridine synthase, RluA family [Methylobacterium populi BJ001]
Length = 345
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 22/250 (8%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIV 80
+ + L +++ED ++I+++K AGLVVHPA G+ GTL + L+ ++ V R GIV
Sbjct: 97 EALPLAVVHEDEDLIVIDKPAGLVVHPAAGHEDGTLVNRLIAHCGASLSGIGGVRRPGIV 156
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMINAAIM 135
HRLDK++SGL+VVAK+ ++ L Q H ++R YLA+VWG+P+ G I A +
Sbjct: 157 HRLDKDTSGLLVVAKNDLAHQGLSAQFADHGRSGALERAYLALVWGVPEPRAGTIRANLA 216
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
R+ HNR K+ V ++ + A+T+Y R+ +L+RC L+TGRTHQIRVH+ G
Sbjct: 217 RSRHNREKIAVVRDGEGREAITHY-RVEALPAADGVTALLRCRLETGRTHQIRVHLSHRG 275
Query: 196 HGIVGDNLYGKKYSKSL------------IFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + RQALHA +LG +HP++ +L++ LP
Sbjct: 276 HPLLGDAVYGGAFKTKAARLAEPARDALTALARQALHAAELGFLHPRSGERLRFESPLPA 335
Query: 244 DISKLITFSG 253
D S+L+ G
Sbjct: 336 DFSRLLAALG 345
>gi|222149596|ref|YP_002550553.1| ribosomal large subunit pseudouridine synthase RluD subfamily
[Agrobacterium vitis S4]
gi|221736578|gb|ACM37541.1| ribosomal large subunit pseudouridine synthase RluD subfamily
[Agrobacterium vitis S4]
Length = 342
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 157/274 (57%), Gaps = 29/274 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
I G +L+I P+ K E I L ++YED ++I+L+K AGLVVHP GN +GTL
Sbjct: 65 IKPGDQLVIAMPEPEDPEPKGED--IPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLV 122
Query: 62 DNLL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ L+ + + V R GIVHRLDK +SG+MVVAK+ ++ HL +Q H ++
Sbjct: 123 NALIHHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLE 182
Query: 114 RKYLAMVWGIPK-LNGMINAAIMRNPHNRIKMTVSKNF--NAKPALTYY---ERLATGII 167
R Y A+VWG P+ L G I+AA+ R +R K TV + +A+ A+T+Y ER
Sbjct: 183 RAYQALVWGRPRGLRGTIDAALGRA-GDRTKRTVKREDTDDAREAITHYQVMERYGEKPD 241
Query: 168 NKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FN 215
SL+ C L+TGRTHQIRVHM +GH ++GD YG + +K+++ F+
Sbjct: 242 ATCLASLVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFH 301
Query: 216 RQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
RQALHAY L HP + + +PDD+ +I
Sbjct: 302 RQALHAYLLAFEHPTTGDVMHFAAPIPDDMETII 335
>gi|424040110|ref|ZP_17778341.1| ribosomal large subunit pseudouridine synthase D [Vibrio cholerae
HENC-02]
gi|408892223|gb|EKM29789.1| ribosomal large subunit pseudouridine synthase D [Vibrio cholerae
HENC-02]
Length = 325
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 142/237 (59%), Gaps = 17/237 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK G VVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDEDIIVINKPRGFVVHPGAGTPDGTVLNALLHHYPDIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGGKVDQPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V+ KPA+T+Y R+A ++H + IR L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 LMAVAP--LGKPAVTHY-RVAEHF--REH-TRIRLRLETGRTHQIRVHMSYLQHPLLGDT 251
Query: 203 LYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG + S+ L F+RQALHA L HP +L++ +PDD+ ++
Sbjct: 252 AYGGRARIPTGASEELTAMIRGFDRQALHAVMLRFEHPITGEELEFHAPVPDDMVEM 308
>gi|407774742|ref|ZP_11122039.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
profundimaris WP0211]
gi|407282224|gb|EKF07783.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
profundimaris WP0211]
Length = 323
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 152/261 (58%), Gaps = 24/261 (9%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
++L + +P+ + + + IKLD+++ED +++++NK AG+VVHPA GN SGTL + LL
Sbjct: 63 FDLSVPEPE----MAEPTPEDIKLDVLFEDEDLLVINKPAGMVVHPAAGNESGTLVNALL 118
Query: 66 ----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL--KMHIVQRKYLAM 119
+ + V R GIVHRLDK++SG MVVAK+ ++ L N ++R YLA+
Sbjct: 119 AHCGDSLSGIGGVKRPGIVHRLDKDTSGAMVVAKNDAAHRALSNLFAEDKENIERAYLAV 178
Query: 120 VWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
VWG+P+ +G I I R+P NR KM V K K ALT+Y+ L T + SL+ C
Sbjct: 179 VWGVPRPRSGDIEGNIGRSPRNRKKMAVVKK-GGKYALTHYKTLQT--RDDSLASLVECR 235
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI----------FNRQALHAYKLGLIH 228
L TGRTHQIRVHM +GH +V D +Y + + FN+QALHA LG +H
Sbjct: 236 LATGRTHQIRVHMNHIGHALVCDPVYSRNRPAGKLNLEAQQILNAFNKQALHARTLGFLH 295
Query: 229 PKNNLKLKWRINLPDDISKLI 249
P+ + +P D+ L+
Sbjct: 296 PRTGAYISTEAPIPGDLLALM 316
>gi|400405104|ref|YP_006587963.1| RluA family pseudouridine synthase [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400363467|gb|AFP84535.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 348
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 139/235 (59%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L IIYED +I+++NK LVVH GN GT+ + LL +P + +VPRAGIVHRLDK
Sbjct: 106 IPLAIIYEDEDILVINKPCNLVVHTGCGNPDGTILNALLHYFPPIADVPRAGIVHRLDKG 165
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++++ +HLV L+ + R+Y A+ G G + +I R+ R M +
Sbjct: 166 TTGLMVVAKTLQAQMHLVESLQARAITREYEAIAIGTMTAGGSVRQSIARHATKRTHMAI 225
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
KPA+T+Y R+ + H +R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 226 RP--MGKPAVTHY-RIVEHFRSHTH---LRLRLETGRTHQIRVHMAHINHPLVGDPLYGG 279
Query: 206 -----KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S + +F QALHA L L HP +++++W LP D++ LI
Sbjct: 280 RPKPPKGASAAFKDQLHLFYHQALHAIFLSLFHPITSIEMRWHAPLPKDMAALIA 334
>gi|331004934|ref|ZP_08328347.1| Ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium IMCC1989]
gi|330421258|gb|EGG95511.1| Ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium IMCC1989]
Length = 333
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/246 (43%), Positives = 141/246 (57%), Gaps = 31/246 (12%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I +D +Y D III+NK AGLVVHP G GTL + LL YP L +PRAGIVHRLDK+
Sbjct: 81 IAIDEVYSDEHIIIINKPAGLVVHPGAGMPDGTLLNGLLFHYPELSTLPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVA+S+ ++ LV QL+ + R+Y A+V G G+I+ I R+P RIKM V
Sbjct: 141 TTGLMVVARSLLAHTSLVQQLQDRSLGREYEAVVMGELTGGGVIDKPIGRHPTQRIKMAV 200
Query: 147 ----------------SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
+ K A+T+Y RL HI+ C L+TGRTHQIRVH
Sbjct: 201 IDRSHRRGGYSDESSRPDSQAGKEAITHY-RLLKRFSGYTHIA---CQLETGRTHQIRVH 256
Query: 191 MQWLGHGIVGDNLYGKKYS---------KSLI--FNRQALHAYKLGLIHPKNNLKLKWRI 239
+ H +VGD +Y + KS++ F RQALHA KL L+HP++ L+W
Sbjct: 257 LAHSNHPLVGDPVYLTRQKWVAGTVVELKSILTAFTRQALHARKLTLVHPQSGDTLEWES 316
Query: 240 NLPDDI 245
LP D+
Sbjct: 317 ELPKDM 322
>gi|357385456|ref|YP_004900180.1| ribosomal large subunit pseudouridine synthase D [Pelagibacterium
halotolerans B2]
gi|351594093|gb|AEQ52430.1| ribosomal large subunit pseudouridine synthase D [Pelagibacterium
halotolerans B2]
Length = 336
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 152/268 (56%), Gaps = 24/268 (8%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
+G + + P+ + + + I L+I++ED +I+++K AG+VVHPA GN GTL +
Sbjct: 65 TGESITLAAPEP--VEAEPQPQDIALNILFEDEYLIVIDKPAGMVVHPAPGNEDGTLVNA 122
Query: 64 LL----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRK 115
L+ + + V R GIVHRLDK++SG+MV AK+ +++ L Q H ++R
Sbjct: 123 LIHHCGDSLRGIGGVKRPGIVHRLDKDTSGVMVAAKTEQAHNGLAAQFADHGRTGPLERA 182
Query: 116 YLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISL 174
Y+A VWGIP L G + I R+P+NR+K +V + A+T+Y +K I+
Sbjct: 183 YIAFVWGIPNPLVGTVETMIGRDPNNRLKQSVQPR-EGREAITHYRVEGRFSDDKWSIAQ 241
Query: 175 IRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSL------------IFNRQALHAY 222
+RC L+TGRTHQIRVHM +GH ++GD +YG ++ + NRQALHA
Sbjct: 242 VRCQLETGRTHQIRVHMAHIGHPLIGDGVYGSAFATKINTVPQEIRHTVVSLNRQALHAA 301
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLIT 250
LG HP LK+ LP +++ L T
Sbjct: 302 ILGFAHPVTGQTLKFESPLPSELAALAT 329
>gi|316931592|ref|YP_004106574.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
DX-1]
gi|315599306|gb|ADU41841.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
DX-1]
Length = 334
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 143/245 (58%), Gaps = 25/245 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I LDI +ED +II+LNK GLVVHPA G+ +GTL + L+ ++ V R GIVHR
Sbjct: 84 IALDIAHEDADIIVLNKPRGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVRRPGIVHR 143
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK+++GLMVVAK+ +++ L Q H ++R Y A VWG+P + G I+A I R+
Sbjct: 144 LDKDTTGLMVVAKNDRAHQSLSAQFADHGRTGELRRGYFAFVWGVPGRTYGTIDAPIDRH 203
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PH R KM V + + A+T++E L + G K SLI C L+TGRTHQIRVH+ +G
Sbjct: 204 PHAREKMAVRQG--GREAITHWEVLESFAGKDGKPVASLIACQLETGRTHQIRVHLAHIG 261
Query: 196 HGIVGDNLYGKKYSK------------SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD++YG + RQALHAY L L HP L W LP
Sbjct: 262 HPLLGDDVYGPHFKTKANQLAPAARAALAQLGRQALHAYLLTLEHPSTGEILTWESPLPA 321
Query: 244 DISKL 248
D++ L
Sbjct: 322 DLAHL 326
>gi|91974839|ref|YP_567498.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB5]
gi|91681295|gb|ABE37597.1| ribosomal large subunit pseudouridine synthase D [Rhodopseudomonas
palustris BisB5]
Length = 426
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 150/247 (60%), Gaps = 25/247 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ I L+I++ED++II+++K GLVVHPA G+ +GTL + L+ E + V R GIV
Sbjct: 174 EAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGESLSGIGGVRRPGIV 233
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIM 135
HRLDK+++GLMV AK+ +++ L Q H ++R Y A VWG P ++ G I+A I
Sbjct: 234 HRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGAPNRIRGTIDAPID 293
Query: 136 RNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQW 193
R+PH R KM V + A+T++E L T G + +SLI C L+TGRTHQIRVH+
Sbjct: 294 RHPHAREKMAVRDG--GREAITHWEVLETFTGRSGGEIVSLIACQLETGRTHQIRVHLAH 351
Query: 194 LGHGIVGDNLYGKKY----------SKSLIFN--RQALHAYKLGLIHPKNNLKLKWRINL 241
+GH ++GD++YG + +++ + + RQALHAY L L HP + W L
Sbjct: 352 IGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPSTGEVVAWESGL 411
Query: 242 PDDISKL 248
P D+ +L
Sbjct: 412 PADLKRL 418
>gi|260912661|ref|ZP_05919147.1| ribosomal large subunit pseudouridine synthase D [Pasteurella
dagmatis ATCC 43325]
gi|260633039|gb|EEX51204.1| ribosomal large subunit pseudouridine synthase D [Pasteurella
dagmatis ATCC 43325]
Length = 324
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L+I+YED++I+++NK VVHP GN +GT+ + LL YP + VPRAGIVHRLDK+
Sbjct: 81 LPLNIVYEDDDILVINKPKDFVVHPGAGNPTGTVLNALLYHYPQIAEVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMV+AK+I + LV L+ + R+Y A+ GI GM++ + R+P R +M V
Sbjct: 141 TTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIASGIMTKGGMVDQPMARHPTKRTQMAV 200
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 201 HP--MGKPAITHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQT 251
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LP+D +L+
Sbjct: 252 YGGRPRPPKNASEEFMAVLRDFKRQALHAIMLRLKHPITGEMMEWYAPLPEDFIQLV 308
>gi|260582391|ref|ZP_05850183.1| pseudouridylate synthase [Haemophilus influenzae NT127]
gi|260094542|gb|EEW78438.1| pseudouridylate synthase [Haemophilus influenzae NT127]
Length = 324
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPISEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|383753720|ref|YP_005432623.1| putative ribosomal large subunit pseudouridine synthase D
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365772|dbj|BAL82600.1| putative ribosomal large subunit pseudouridine synthase D
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 312
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 141/235 (60%), Gaps = 15/235 (6%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGI 79
E + I LDI+YED +II++NK+ G+VVHPA G SGTL + LL L + R GI
Sbjct: 75 EPEDIPLDILYEDKDIIVVNKARGMVVHPASGVYSGTLVNALLHHCQDLSGINGEIRPGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP 138
VHRLDK++SG+MV AK+ +++ L Q++ R Y A+V+G I + G+I I R+P
Sbjct: 135 VHRLDKDTSGVMVCAKNDTAHLDLAEQIRTKAAHRTYWAIVYGNIKEEAGIIKGDIGRHP 194
Query: 139 HNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
+R KM + + N KPA+T++ ER +L+ C L+TGRTHQIRVHM +G
Sbjct: 195 TDRKKMAIVRE-NGKPAVTHFKVLERFG-------EYTLVECKLETGRTHQIRVHMNSIG 246
Query: 196 HGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
H +V D YG K S QALH+ +L L HP ++ + LP D+ K++T
Sbjct: 247 HPLVNDPKYGPKKSSPFAIQGQALHSLQLTLTHPVTREEMTFTAPLPTDMEKILT 301
>gi|90418990|ref|ZP_01226901.1| ribosomal large subunit pseudouridine synthase [Aurantimonas
manganoxydans SI85-9A1]
gi|90337070|gb|EAS50775.1| ribosomal large subunit pseudouridine synthase [Aurantimonas
manganoxydans SI85-9A1]
Length = 344
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 149/248 (60%), Gaps = 23/248 (9%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIVHRLDKN 86
I++ED +++++K AGLVVHP GN +GTL + L+ + + V R GIVHRLDK+
Sbjct: 95 IVFEDEHLVVIDKPAGLVVHPGPGNWTGTLVNALIHHCGDSLSGVGGVKRPGIVHRLDKD 154
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
+SGL+VVAKS ++ L +Q H + R YLA+VWG+P + +G I+AA+ R+ +R
Sbjct: 155 TSGLLVVAKSDAAHQGLADQFAAHGRDGRLSRAYLALVWGVPLRPSGTIDAALGRSTTDR 214
Query: 142 IKMTVSKNFNAKPA--LTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
+K V A +T + + +++ SL+ C L+TGRTHQIRVHM +GH +V
Sbjct: 215 VKRAVVAADRADARHAVTRFNLVKASMLDDGIASLVECVLETGRTHQIRVHMAHIGHPLV 274
Query: 200 GDNLYGKKY-SKSL-----------IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
GD++YG + SKS F+RQALHA++LG +HP L ++ +LP D+ +
Sbjct: 275 GDDVYGAGFRSKSRRLEDDARHVVERFDRQALHAFRLGFVHPVTGEDLAFQADLPADMVE 334
Query: 248 LITFSGIK 255
L GI
Sbjct: 335 LCAAFGIS 342
>gi|344198836|ref|YP_004783162.1| RluA family pseudouridine synthase [Acidithiobacillus ferrivorans
SS3]
gi|343774280|gb|AEM46836.1| pseudouridine synthase, RluA family [Acidithiobacillus ferrivorans
SS3]
Length = 319
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 23/239 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
+ L I+YED EI++++K AG + HP G+ GTL + +L P +PR GIVHRLDK+
Sbjct: 82 LPLHILYEDAEILVVHKPAGQLTHPGAGHADGTLVNGVLAHVPDNAYLPRGGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GL+VVAKS + L+ QL H + R+YLA+V G G ++A I R+ H+R++MTV
Sbjct: 142 TTGLLVVAKSEMARQSLIEQLGDHSMHREYLALVMGAMTGGGRVDAPIGRHAHDRLRMTV 201
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ +PA T Y ER +H S +R L TGRTHQIRVHM +GH +VGD +
Sbjct: 202 RD--DGRPAQTEYRLVERF------PRH-SYLRLRLATGRTHQIRVHMTHIGHPLVGDPV 252
Query: 204 YGKKY-----------SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
Y + + F RQALHA++L L HP++ + W LP+D+++L+T
Sbjct: 253 YAGRMMVPQGLDEVALAHWRQFRRQALHAWRLRLYHPESGALMTWESPLPEDMTELLTL 311
>gi|148827314|ref|YP_001292067.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae PittGG]
gi|148718556|gb|ABQ99683.1| SfhB [Haemophilus influenzae PittGG]
Length = 324
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLSHPITGEMMEWYAPLPDDFVELL 308
>gi|372223509|ref|ZP_09501930.1| RluA family pseudouridine synthase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 342
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 151/254 (59%), Gaps = 33/254 (12%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN--VPRAGIVHR 82
+ I LDI+YED+ ++++NK AG+VVHP GN SGTL + L+ + L N R G+VHR
Sbjct: 91 EAIPLDIVYEDDHLMVVNKPAGMVVHPGHGNYSGTLVNALVYHFESLPNNSSGRPGLVHR 150
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNR 141
+DK++SGL+V+AK+ ++ HL NQ +R+Y+A+VWG I + G I + RNP NR
Sbjct: 151 IDKDTSGLLVIAKTEEAMTHLANQFFEKTSKREYIALVWGNIEEDEGTIEGHLARNPKNR 210
Query: 142 IKMTVSKNFN-AKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
++M V + + K A+T++ ERL +++L+ C L+TGRTHQIRVHM+++GH
Sbjct: 211 LQMMVFPDGDQGKEAVTHFKVLERLG-------YVTLVSCKLETGRTHQIRVHMKYIGHT 263
Query: 198 IVGDNLYG----------KKYSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
+ D YG KY + + + RQALHA LG +HP +L + +P
Sbjct: 264 LFNDERYGGDKVLKGTTFTKYKQFVENTFKVLPRQALHAKTLGFVHPVTGKELNFDSPIP 323
Query: 243 DDISKLITFSGIKW 256
+D+ I KW
Sbjct: 324 EDMVAAIE----KW 333
>gi|386265467|ref|YP_005828959.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae R2846]
gi|309972703|gb|ADO95904.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae R2846]
Length = 324
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPISEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|440509762|ref|YP_007347198.1| Ribosomal large subunit pseudouridine synthase D [Candidatus
Blochmannia chromaiodes str. 640]
gi|440453975|gb|AGC03467.1| Ribosomal large subunit pseudouridine synthase D [Candidatus
Blochmannia chromaiodes str. 640]
Length = 325
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 156/258 (60%), Gaps = 20/258 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I IK N N + I LDI+YED++I+++NK+ +VVHP GN SGT+ + L
Sbjct: 64 GGEFIEIKDIVNIDNNSIVPQDIPLDIVYEDDDIVVINKAKNMVVHPGAGNHSGTILNAL 123
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP + V R+GIV RLDK+++GLMVVAK++ +Y L+ K + R+Y A+V G
Sbjct: 124 LYKYPAITEVFRSGIVQRLDKDTTGLMVVAKNMIAYHSLLRLFKKRKIVREYDAVVLGNF 183
Query: 125 KLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT-GIINKKHISLIRCNLKTG 182
N G IN I R+ +R +MTV N K A+T+Y + + G+ + IR L+TG
Sbjct: 184 LHNEGTINQPIRRHAVHRTRMTV--NPMGKSAITHYSIIESFGMYTR-----IRVRLETG 236
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKK------YSKSL-----IFNRQALHAYKLGLIHPKN 231
RTHQIRVHM ++ H ++GD+ YGK S ++ + NRQALHA L L HP
Sbjct: 237 RTHQIRVHMAYINHPLLGDHKYGKSTYFIKGVSDTVNDCLHVLNRQALHAATLQLCHPIT 296
Query: 232 NLKLKWRINLPDDISKLI 249
+K+KW + LP DI KLI
Sbjct: 297 RIKMKWDVPLPKDIIKLI 314
>gi|332530535|ref|ZP_08406474.1| pseudouridine synthase, RluA family protein [Hylemonella gracilis
ATCC 19624]
gi|332040010|gb|EGI76397.1| pseudouridine synthase, RluA family protein [Hylemonella gracilis
ATCC 19624]
Length = 361
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 147/268 (54%), Gaps = 27/268 (10%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL--- 65
I ++P K E V+ LDI++ED +++++K AGLVVHPA GN SGTL + LL
Sbjct: 83 IELRPTPQSQAFKPE--VMDLDIVHEDAHLLVIHKPAGLVVHPAPGNWSGTLLNGLLGRD 140
Query: 66 ----EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM-- 119
E+ +PRAGIVHRLDK++SGLMVVA++ + LV + V R+YLA+
Sbjct: 141 QGRGEVA---AQLPRAGIVHRLDKDTSGLMVVARTRVAMEALVRMIAAREVSRQYLALAH 197
Query: 120 -VWGIPKL---NGMINAAIMRNPHNRIKMTVSK--NFNAKPALTYYERLATGIINKKH-- 171
W P L G I R+P NR++M V KPALT +E L
Sbjct: 198 RAWNGPVLRDVGGAAQEGIGRDPANRLRMAVVDLARHPGKPALTTFELLGNAAPRPDEGL 257
Query: 172 ---ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIH 228
L+RC L TGRTHQIRVH +GH ++GD +YG + + RQALHA++L L H
Sbjct: 258 AQGACLLRCTLHTGRTHQIRVHAASIGHPLLGDGVYGG--APVVGLRRQALHAWRLALRH 315
Query: 229 PKNNLKLKWRINLPDDISKLITFSGIKW 256
P + L + PDD++K G+ +
Sbjct: 316 PVSGEALVFHAPPPDDLAKACAALGLDY 343
>gi|304309991|ref|YP_003809589.1| ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium HdN1]
gi|301795724|emb|CBL43923.1| Ribosomal large subunit pseudouridine synthase D [gamma
proteobacterium HdN1]
Length = 318
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 147/235 (62%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI++ED+ ++I+NK AGLVVHP G+ GTL + L+ P L +PRAG+VHR+DK+
Sbjct: 80 ISLDIVHEDDSLLIINKPAGLVVHPGSGHSEGTLVNALVNHAPKLAELPRAGLVHRIDKD 139
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GL+VVAK+++++ LV QL+ +V+R+Y A+ G+ G ++A I R+P R K V
Sbjct: 140 TTGLLVVAKTLEAHTDLVAQLQAKLVKREYEAIAQGVMTGGGKVDAPIGRHPTQRTKQAV 199
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ + A+T+Y +A + H + IR L+TGRTHQIRVHM + + ++GD YG
Sbjct: 200 VS--SGREAVTHYRVVAR---YRAH-THIRLALETGRTHQIRVHMAHIHYPLLGDPDYGG 253
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S I F RQALHA +L L HP++ + W + LP+D +L+
Sbjct: 254 RLRLPKAASPEFIEALQGFRRQALHAQRLALHHPESGDWVAWEVPLPEDFVQLLA 308
>gi|145628474|ref|ZP_01784274.1| SfhB [Haemophilus influenzae 22.1-21]
gi|144978944|gb|EDJ88630.1| SfhB [Haemophilus influenzae 22.1-21]
Length = 324
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EPENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLSHPITGEMMEWYAPLPDDFVELL 308
>gi|421597794|ref|ZP_16041336.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
gi|404270096|gb|EJZ34234.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
Length = 326
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 157/267 (58%), Gaps = 27/267 (10%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ SG + I P+ + + E I LDI++ED++II++NK GLVVHPA G+ +GTL
Sbjct: 53 VASGDTITIDVPEASPAEPQGED--IALDIVFEDDDIIVINKPKGLVVHPAAGHETGTLV 110
Query: 62 DNLLEIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQ 113
+ L+ ++ V R GIVHRLDK+++GLMVVAK+ ++ L Q H ++
Sbjct: 111 NALIAHCGASLSGIGGVRRPGIVHRLDKDTTGLMVVAKNDLAHASLSAQFADHGRTGEMR 170
Query: 114 RKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT--GIINKK 170
R Y+A WG+P + G ++A I R+PH R KM V + + A+T++E L + G K
Sbjct: 171 RGYMAFAWGVPHRHRGTVDAPIDRHPHAREKMAVRQ--GGREAVTHWEILESFAGPDGKG 228
Query: 171 HISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FNRQA 218
+L+ C L+TGRTHQIRVH+ +GH ++GD +YG + S++ + RQA
Sbjct: 229 VAALLACELETGRTHQIRVHLAHIGHPLMGDAVYGPHFKTKANQLGPQSQAALAALGRQA 288
Query: 219 LHAYKLGLIHPKNNLKLKWRINLPDDI 245
LHAY L L HP+ L W LP+D+
Sbjct: 289 LHAYLLVLKHPRTGELLHWEAPLPEDL 315
>gi|336307721|gb|AEI50823.1| pseudouridine synthase, RluA family [Runella slithyformis DSM
19594]
Length = 342
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 146/251 (58%), Gaps = 29/251 (11%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L IIYED E+++LNK AG+VVHPA GN SGT+ + L+ + L R G++HR
Sbjct: 94 IPLTIIYEDQEVLVLNKPAGMVVHPAYGNWSGTVVNALVYHFQHLPTGRNGEARPGLIHR 153
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNR 141
+DK++SGL+V+AK+ S H+ Q H +R Y A+VWG PK G I I R+ +R
Sbjct: 154 IDKDTSGLLVIAKTEYSMAHIARQFFEHTTERTYFALVWGEPKTTEGTIVGHIGRSARDR 213
Query: 142 IKMTVSKN-FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
M V ++ K A+T+Y+ L T K++SL++CNL+TGRTHQIRVH Q +GH + G
Sbjct: 214 KVMDVYEDGSQGKHAVTHYKVLKTF----KYVSLVQCNLETGRTHQIRVHFQHIGHPLFG 269
Query: 201 DNLYG---------KKYSKSLIFN------RQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
D++YG ++ + N RQALHA LG HPK +++ LP+D
Sbjct: 270 DSVYGGDKILRGTTSGSYRAFVENCFQLMPRQALHAKSLGFEHPKTKKWMQFDSELPEDF 329
Query: 246 SKLITFSGIKW 256
++ KW
Sbjct: 330 QAVLA----KW 336
>gi|296536195|ref|ZP_06898317.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
gi|296263477|gb|EFH09980.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
Length = 343
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 137/242 (56%), Gaps = 21/242 (8%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIVHR 82
I L I++ED +I+L+K AGLVVHPA GN GTL + LL E + R GIVHR
Sbjct: 100 IPLTILFEDRHLIVLDKPAGLVVHPAPGNQDGTLVNALLAHAGEELTGIGGEKRPGIVHR 159
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNR 141
LDK++SG+MVVAKS ++ L ++R YLA+ WG+P +G ++A + R+P +R
Sbjct: 160 LDKDTSGVMVVAKSEVAHTALSAAFASRDLERAYLALAWGVPAPASGEVDAPVGRHPTDR 219
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+M V N K ALT Y AT +L+RC L TGRTHQIRVHM +GH +VGD
Sbjct: 220 KRMAVVAR-NGKHALTRY---ATERAWGTSCALLRCRLATGRTHQIRVHMAHIGHPLVGD 275
Query: 202 NLYGKKYSKS------------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+Y ++ + L F RQALHA LG HP L++ LP D+ L+
Sbjct: 276 PVYLRRLPATARGLPVAARDALLAFPRQALHAESLGFHHPVTGEMLRFSTPLPPDMQALL 335
Query: 250 TF 251
Sbjct: 336 AL 337
>gi|170718793|ref|YP_001783975.1| 23S rRNA pseudouridine synthase D [Haemophilus somnus 2336]
gi|168826922|gb|ACA32293.1| pseudouridine synthase, RluA family [Haemophilus somnus 2336]
Length = 324
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 142/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
++ E + + L+I+YED I+++NK VVHP GN GT+ + LL YP ++ VPRAGI
Sbjct: 74 SRFEPENLPLNIVYEDEHILVINKPKDFVVHPGAGNQRGTVLNALLYHYPKIVEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ +G+ G ++ + R+P
Sbjct: 134 VHRLDKDTTGLMVVAKTIPAQTKLVQDLQKRKIIREYEAVAFGVMTQGGKVDQPMSRHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R +M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTQMAVHP--LGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHISH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ + F RQALHA L L HP ++W LPDD
Sbjct: 245 PLLGDQTYGGRPRPPKNASEEFMQVMRDFKRQALHAIMLCLTHPITGEIMEWEAPLPDDF 304
Query: 246 SKLI 249
LI
Sbjct: 305 VTLI 308
>gi|392960490|ref|ZP_10325958.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421054753|ref|ZP_15517718.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421061524|ref|ZP_15523839.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421066823|ref|ZP_15528377.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421071616|ref|ZP_15532732.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392440434|gb|EIW18114.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446881|gb|EIW24152.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392449275|gb|EIW26404.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392453103|gb|EIW30007.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|392455067|gb|EIW31874.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
Length = 308
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 143/230 (62%), Gaps = 16/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
I L I+YEDN+III+NKS G+VVHPA GN +GTL + LLE L IN V R GIVHRL
Sbjct: 79 IPLAILYEDNDIIIINKSRGMVVHPAPGNYNGTLVNALLEHCEDLSGINGVARPGIVHRL 138
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SG+M VAKS ++++ L Q+K R+YLA+V+G I + +G+I A I R+P R
Sbjct: 139 DKDTSGVMAVAKSDRAHVSLAKQIKERTASRRYLAIVYGNIKEDHGVIKAPIGRHPSERK 198
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V+ N+K A T + ER +L+ C L TGRTHQIRVHM ++GH +V
Sbjct: 199 KMAVTFT-NSKEATTKFRVMERFGD-------YTLVECKLLTGRTHQIRVHMTYIGHSVV 250
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG I QALH+ +L + HP + + LP+D+ ++
Sbjct: 251 GDPKYGPGRMPFSIIG-QALHSAELRISHPVTEESMTFTAPLPEDMEMIL 299
>gi|148825561|ref|YP_001290314.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae PittEE]
gi|148715721|gb|ABQ97931.1| SfhB [Haemophilus influenzae PittEE]
Length = 324
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIAEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMDRHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|337279525|ref|YP_004618997.1| uracil hydrolyase [Ramlibacter tataouinensis TTB310]
gi|334730602|gb|AEG92978.1| Uracil hydrolyase [Ramlibacter tataouinensis TTB310]
Length = 350
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 144/250 (57%), Gaps = 18/250 (7%)
Query: 13 PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI 72
P+ F + + LD+++ED +++L+K AGLVVHPA G+ SGTL + LL +
Sbjct: 101 PQSQAF----RPEPMALDVVFEDPHLLVLDKPAGLVVHPAPGHWSGTLLNGLLARDAKAL 156
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV---W-GIPKLNG 128
+PRAGIVHRLDK++SGLMVVA+ ++ LV + V R+YLA+ W G P
Sbjct: 157 ALPRAGIVHRLDKDTSGLMVVARERQTMDALVRLIAAREVSRQYLALAHRPWAGAPVRE- 215
Query: 129 MINAAIMRNPHNRIKMTVS--KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
++AAI R+P NR++M V KPA T E L + ++ L+TGRTHQ
Sbjct: 216 -VDAAIGRDPTNRLRMAVVDLDRQGGKPASTRIELLQ----DASEGCWVQATLRTGRTHQ 270
Query: 187 IRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
IRVHM LGH +V D LYG + L RQALHA++L HP L+++ LP D+
Sbjct: 271 IRVHMAHLGHPLVADELYGGAPAAGL--RRQALHAFRLAFRHPVTGQALEFQSPLPRDLQ 328
Query: 247 KLITFSGIKW 256
+ G+++
Sbjct: 329 DALAAWGLRY 338
>gi|288553139|ref|YP_003425074.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
gi|288544299|gb|ADC48182.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
Length = 304
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 150/229 (65%), Gaps = 10/229 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
I LD++YED ++I++NK G+VVHPA G+ +GTL + LL L IN V R GIVHR+
Sbjct: 78 IPLDVVYEDADVIVVNKPRGMVVHPAPGHYTGTLVNALLYHCKDLSGINGVIRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK+ ++ LV+QLK +R Y A+V G IP +G I A I R+ +R
Sbjct: 138 DKDTSGLLMVAKNDHAHESLVSQLKAKTTKRHYKAIVHGVIPHQHGTIEAPIGRDKKDRQ 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
MTV+++ N++ A+T++ L K + ++C L+TGRTHQIRVHM+++G+ + GD
Sbjct: 198 SMTVTED-NSRDAVTHFTVLECF----KDFTYVQCELETGRTHQIRVHMKYIGYPLAGDP 252
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG K K+L QALHA LG HP+ +L++ +P+D+ L+ +
Sbjct: 253 KYGPK-KKTLEIEGQALHAATLGFTHPRTGEELEFSAPIPEDMEHLLHY 300
>gi|163846479|ref|YP_001634523.1| RluA family pseudouridine synthase [Chloroflexus aurantiacus
J-10-fl]
gi|222524258|ref|YP_002568729.1| RluA family pseudouridine synthase [Chloroflexus sp. Y-400-fl]
gi|172045876|sp|Q45826.2|Y901_CHLAA RecName: Full=Uncharacterized RNA pseudouridine synthase Caur_0901;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|163667768|gb|ABY34134.1| pseudouridine synthase, RluA family [Chloroflexus aurantiacus
J-10-fl]
gi|222448137|gb|ACM52403.1| pseudouridine synthase, RluA family [Chloroflexus sp. Y-400-fl]
Length = 316
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI--NVPRAGIVHR 82
+ I LD++YED +I ++NK AG+VVHPA G+ GTL + LL YP L R GIVHR
Sbjct: 87 EPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHR 146
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD+++SGL+V+A+ ++ LV+Q + +++ Y A+V G P G I+A I R+P +R+
Sbjct: 147 LDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDAPIGRDPRDRL 206
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V + +PA T+Y L T SL+ L+TGRTHQIRVH++ LG+ IVGD
Sbjct: 207 RMAVVP--DGRPARTHYRLLDT----FGDYSLLEVQLETGRTHQIRVHLRHLGYPIVGDP 260
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
+YG + S L +RQ LHA LGL+HP++ ++ LP D+
Sbjct: 261 VYGPRRSH-LHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADLQ 303
>gi|386758269|ref|YP_006231485.1| pseudouridylate synthase [Bacillus sp. JS]
gi|384931551|gb|AFI28229.1| pseudouridylate synthase [Bacillus sp. JS]
Length = 303
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
+ LDI YED +++++NK G+VVHPA G+L+GTL + L+ L IN V R GIVHR+
Sbjct: 78 MDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK+ ++ LVNQL V RKY A+V G I +G I+A I R+ +R
Sbjct: 138 DKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQ 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
MTV++ + K A+T++ ER + +L+ C L+TGRTHQIRVHM+++G +
Sbjct: 198 SMTVTR--DGKNAVTHFHVLERF-------QDFTLVECQLETGRTHQIRVHMKYIGFPLA 248
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG + K++ FN QALHA LG HP+ +++ LPDD+++LI
Sbjct: 249 GDPKYGPR--KTIDFNGQALHAGVLGFDHPRTGEYVEFEAPLPDDMAELI 296
>gi|113460513|ref|YP_718577.1| 23S rRNA pseudouridine synthase D [Haemophilus somnus 129PT]
gi|112822556|gb|ABI24645.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
somnus 129PT]
Length = 321
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 142/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
++ E + + L+I+YED I+++NK VVHP GN GT+ + LL YP ++ VPRAGI
Sbjct: 71 SRFEPENLPLNIVYEDEHILVINKPKDFVVHPGAGNQRGTVLNALLYHYPKIVEVPRAGI 130
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK+I + LV L+ + R+Y A+ +G+ G ++ + R+P
Sbjct: 131 VHRLDKDTTGLMVVAKTIPAQTKLVQDLQKRKIIREYEAVAFGVMTQGGKVDQPMSRHPT 190
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R +M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 191 KRTQMAVHP--LGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHISH 241
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ + F RQALHA L L HP ++W LPDD
Sbjct: 242 PLLGDQTYGGRPRPPKNASEEFMQVMRDFKRQALHAIMLRLTHPITGEIMEWEAPLPDDF 301
Query: 246 SKLI 249
LI
Sbjct: 302 VTLI 305
>gi|350560802|ref|ZP_08929642.1| pseudouridine synthase, RluA family [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349783070|gb|EGZ37353.1| pseudouridine synthase, RluA family [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 335
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 143/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + + I L++++ED I+++NK AGLVVHPA G+ GTL + LL P L +PRAGI
Sbjct: 88 SAAQPEAIALEVVHEDAAIVVINKPAGLVVHPAAGHREGTLVNALLHHAPELSALPRAGI 147
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GL+VVA++ + LV QL+ V R+YLA+V G+ G + A I R+P
Sbjct: 148 VHRLDKDTTGLLVVARTPAAQTALVRQLQERSVHREYLALVQGVLISGGTLEAPIGRHPV 207
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+R +M V KPA+T+Y RL + H +L+ L TGRTHQIRVHM +GH
Sbjct: 208 DRKRMAVVA--GGKPAVTHYRVRRRL------RAH-TLVEVRLDTGRTHQIRVHMAQIGH 258
Query: 197 GIVGDNLYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+VGD +YG + F RQALHA LGL HP + ++ LP D
Sbjct: 259 PVVGDPVYGGRPRPVRDMEPAAAQALAAFQRQALHAAVLGLRHPDTGAECRFEAPLPADF 318
Query: 246 SKLI 249
L+
Sbjct: 319 QALL 322
>gi|410620449|ref|ZP_11331320.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola polaris
LMG 21857]
gi|410159934|dbj|GAC35458.1| 23S rRNA pseudouridine1911/1915/1917 synthase [Glaciecola polaris
LMG 21857]
Length = 327
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 140/235 (59%), Gaps = 17/235 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+I+YED I+++NK LVVHP GN +GT+ + LL P + +VPRAGIVHRLDK+
Sbjct: 85 IDLNIVYEDEHILVINKPTNLVVHPGAGNANGTILNALLNHVPDIGSVPRAGIVHRLDKD 144
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I + HLV +L+ + R+Y A+V+G G I+ I R+P R M V
Sbjct: 145 TTGLMVVAKTIPAQTHLVEKLQAREISREYEAVVYGNLIAGGSIDEPIGRHPTKRTNMAV 204
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ + KPALT+Y R+ H +R L +GRTHQIRVHM L H +VGD YG
Sbjct: 205 VQ--SGKPALTHY-RVKQKFRAHTH---LRLKLASGRTHQIRVHMAHLRHPLVGDQAYGG 258
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
K S +I F RQALHA +L L HP + ++ LPDD L+
Sbjct: 259 RPRLPKAASDIMIETIRGFKRQALHAIQLELEHPITGEWMSFKAPLPDDFVNLLA 313
>gi|421074245|ref|ZP_15535285.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392527751|gb|EIW50837.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 310
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 146/230 (63%), Gaps = 16/230 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
I L I+YEDN+III+NKS G+VVHPA GN +GTL + LLE L IN V R GIVHRL
Sbjct: 80 IPLAILYEDNDIIIINKSRGMVVHPAAGNYNGTLVNALLEHCEDLSGINGVARPGIVHRL 139
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SG+MVVAKS ++++ L Q+K R+YLA+V+G I + +G+I A I R+P +R
Sbjct: 140 DKDTSGVMVVAKSDRAHVSLAKQIKDRTASRRYLAIVYGNIKEDHGVIKAPIGRHPSDRK 199
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM+V+ N+K A T + ER +L+ C L TGRTHQIRVHM ++GH +V
Sbjct: 200 KMSVTFT-NSKEATTKFRVMERFGD-------YTLVECKLLTGRTHQIRVHMTYIGHSVV 251
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG I QALH+ +L + HP + + LP+D+ ++
Sbjct: 252 GDPKYGPGRMPFSIIG-QALHSAELRISHPVTEEIMIFTAPLPEDMEMIL 300
>gi|238018931|ref|ZP_04599357.1| hypothetical protein VEIDISOL_00791 [Veillonella dispar ATCC 17748]
gi|237864415|gb|EEP65705.1| hypothetical protein VEIDISOL_00791 [Veillonella dispar ATCC 17748]
Length = 307
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 140/233 (60%), Gaps = 16/233 (6%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRL 83
I LD++YED++III+NK G+VVHPA+GN SGTL + LL L + R GIVHRL
Sbjct: 75 IPLDVLYEDHDIIIVNKQRGMVVHPAVGNYSGTLVNALLYHCKDLSGINGEIRPGIVHRL 134
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SG+M+ AK+ ++I L Q+K H +R YLA+V G I + G I A I R+P +R+
Sbjct: 135 DKDTSGVMMAAKNDAAHIGLAEQVKEHSAKRTYLALVQGNIVEEKGTIKAPIGRHPKDRM 194
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
KM V N+K A+T++ ER H +L+ CNL+TGRTHQIRVH +GH +V
Sbjct: 195 KMAVVFE-NSKDAVTHFNVVERFG-------HQTLVECNLETGRTHQIRVHFAHIGHPVV 246
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFS 252
D YG + QALH+ L + HP + + LPDD + F+
Sbjct: 247 NDPFYGYR-RMDFPIEGQALHSRSLDVKHPITGESMHFEAPLPDDFKACLEFA 298
>gi|343492231|ref|ZP_08730604.1| 23S rRNA pseudouridine synthase D [Vibrio nigripulchritudo ATCC
27043]
gi|342827571|gb|EGU61959.1| 23S rRNA pseudouridine synthase D [Vibrio nigripulchritudo ATCC
27043]
Length = 324
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 141/234 (60%), Gaps = 17/234 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++I+++NK VVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EAQDIPLNIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLHHYPDIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV +L+ + R+Y A+ G GMI I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVRELQKRNITREYEAIAIGRMTAGGMIEKPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V N KPA+T+Y R+A ++H + IR L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 LMAV--NELGKPAVTHY-RVAEHF--REH-TRIRLRLETGRTHQIRVHMSYLQHPLLGDT 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
YG K S+ L F+RQALHA L HP +L++ +PDD+
Sbjct: 252 PYGGRARIPKGASEELTEMIRAFDRQALHAVMLRFAHPVTGEELEFHAPVPDDM 305
>gi|411011695|ref|ZP_11388024.1| ribosomal large subunit pseudouridine synthase D [Aeromonas
aquariorum AAK1]
Length = 326
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 144/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + + I+L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGI
Sbjct: 75 TRFDAQDIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPDIAEVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G ++A I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V N +P++T+Y +++K H L R L+TGRTHQIRVHM + H
Sbjct: 195 QRTHMAVVP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMAHIKH 245
Query: 197 GIVGDNLYG----------KKYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+VGD YG + +++L F+RQALHA L L HP ++W P D+
Sbjct: 246 PLVGDPAYGGRLRPLRNAIPELTEALRNFHRQALHATMLQLAHPITGEVMQWHSPTPQDM 305
Query: 246 SKLI 249
L+
Sbjct: 306 LDLM 309
>gi|423198679|ref|ZP_17185262.1| RluA family pseudouridine synthase [Aeromonas hydrophila SSU]
gi|404629869|gb|EKB26594.1| RluA family pseudouridine synthase [Aeromonas hydrophila SSU]
Length = 326
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 144/244 (59%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ + + I+L+I+YED I++++K AGLVVHP G GT+ + LL YP + VPRAGI
Sbjct: 75 TRFDAQDIELNIVYEDEHILVIDKPAGLVVHPGAGTPDGTILNALLHRYPDIAEVPRAGI 134
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMVVAK++ + HLV L+ + R+Y A+ G G ++A I R+P
Sbjct: 135 VHRLDKDTTGLMVVAKTVPAQTHLVEALQARQITREYEAIAIGHMTAGGTVDAPIGRHPT 194
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKK---HISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V N +P++T+Y +++K H L R L+TGRTHQIRVHM + H
Sbjct: 195 QRTHMAVVP--NGRPSVTHYR------VHEKFRGHTRL-RLRLETGRTHQIRVHMAHIKH 245
Query: 197 GIVGDNLYG----------KKYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
+VGD YG + +++L F+RQALHA L L HP ++W P D+
Sbjct: 246 PLVGDPAYGGRLRPLRNAIPELTEALRNFHRQALHATMLQLAHPITGEVMQWHSPTPQDM 305
Query: 246 SKLI 249
L+
Sbjct: 306 LDLM 309
>gi|395792031|ref|ZP_10471470.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714079|ref|ZP_17688338.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421226|gb|EJF87482.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432950|gb|EJF98924.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 332
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 149/251 (59%), Gaps = 26/251 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE----IYPFLINVPRAGIV 80
+ I LDI++ED+ +I++NK AGLVVHP GN +GTL + L+ + V R GIV
Sbjct: 77 EAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCGNSLSGIGGVKRPGIV 136
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMINAAIM 135
HRLDKN+SG+MVVAK+ ++ L Q H + R+Y A++WG+P N I+A++
Sbjct: 137 HRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGVPSRNIWTIDASLG 196
Query: 136 RNPHNRIKMTVSKNF--NAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
R+PHNRIK V N +A+ A+T++ E+ SL+ C L+TGRTHQIRVH
Sbjct: 197 RSPHNRIKQAVVHNHKTHARHAVTHFSLLEKYRICANTTPFASLLECRLETGRTHQIRVH 256
Query: 191 MQWLGHGIVGDNLYGKKY-SKSLI-----------FNRQALHAYKLGLIHPKNNLKLKWR 238
M +GH ++GD +YG + +KS I FNRQALHA L HP + +
Sbjct: 257 MAHIGHPLIGDTVYGNAFRTKSNILNPITKNAIDQFNRQALHAASLTFEHPATGQIMSFS 316
Query: 239 INLPDDISKLI 249
LP D+++LI
Sbjct: 317 SPLPQDMAELI 327
>gi|145641509|ref|ZP_01797087.1| SfhB [Haemophilus influenzae R3021]
gi|145273800|gb|EDK13668.1| SfhB [Haemophilus influenzae 22.4-21]
Length = 324
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPISEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--IGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|325293793|ref|YP_004279657.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
H13-3]
gi|418407474|ref|ZP_12980792.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens 5A]
gi|325061646|gb|ADY65337.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium sp.
H13-3]
gi|358006618|gb|EHJ98942.1| ribosomal large subunit pseudouridine synthase D [Agrobacterium
tumefaciens 5A]
Length = 340
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 153/266 (57%), Gaps = 29/266 (10%)
Query: 10 IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---- 65
I+ P+ K E I LD+ YED+++I+L K AGLVVHP GN +GTL + L+
Sbjct: 73 IVMPEPEDPEPKGED--IPLDVEYEDDDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCG 130
Query: 66 EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVW 121
+ + V R GIVHRLDK +SG+MVVAK+ ++ HL Q H ++R Y A+VW
Sbjct: 131 DSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVW 190
Query: 122 GIPK-LNGMINAAIMRNPHNRIKMTVSKNF--NAKPALTYYE---RLATGIINKKHISLI 175
G P+ L G I+AA+ R +R K V + +A+ A+T+YE R S++
Sbjct: 191 GRPRTLRGTIDAALGRGA-DRTKRAVKREDTDDAREAITHYEVMERFHEKADASCLASMV 249
Query: 176 RCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY----------SKSLI--FNRQALHAYK 223
C L+TGRTHQIRVHM +GH ++GD YG + ++S + F RQALHAY
Sbjct: 250 ECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFRTKANLLEEPARSTVNRFPRQALHAYL 309
Query: 224 LGLIHPKNNLKLKWRINLPDDISKLI 249
L HP+ +++ ++PDD+ +L+
Sbjct: 310 LAFEHPRTGEVMEFETDMPDDMEELL 335
>gi|71891968|ref|YP_277698.1| pseudouridine synthase [Candidatus Blochmannia pennsylvanicus str.
BPEN]
gi|71796074|gb|AAZ40825.1| pseudouridine synthase [Candidatus Blochmannia pennsylvanicus str.
BPEN]
Length = 343
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 156/258 (60%), Gaps = 20/258 (7%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G E I IK N N + I LDI+YED++I+++NK+ +VVHP GN SGT+ + L
Sbjct: 82 GGEFIEIKDIVNIDNNNIVPQDIPLDIVYEDDDIVVINKAKNMVVHPGAGNHSGTILNAL 141
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP 124
L YP + V R+GIV RLDK+++GLMVVAK++ +Y L+ K + R+Y A+V G
Sbjct: 142 LYKYPAITEVFRSGIVQRLDKDTTGLMVVAKNMIAYHSLLRLFKKRKIIREYEAVVLGNF 201
Query: 125 KLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLAT-GIINKKHISLIRCNLKTG 182
N G IN I R+ +R +MTV N K A+T+Y + + G+ + IR L+TG
Sbjct: 202 LHNEGTINQPIRRHAVHRTRMTV--NPMGKSAITHYSIIESFGMYTR-----IRVRLETG 254
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKK--YSKSL---------IFNRQALHAYKLGLIHPKN 231
RTHQIRVHM ++ H ++GD+ YGK + K + + NRQALHA L L HP
Sbjct: 255 RTHQIRVHMAYINHPLLGDHKYGKSTYFIKGISDTVNDCLHVLNRQALHAATLQLCHPIT 314
Query: 232 NLKLKWRINLPDDISKLI 249
+K+KW + LP DI KLI
Sbjct: 315 RIKMKWDVPLPKDIIKLI 332
>gi|229587213|ref|YP_002845714.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia africae ESF-5]
gi|228022263|gb|ACP53971.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia africae ESF-5]
Length = 313
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 18/240 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+ LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 VALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY +VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKVLVWGVINPLEGVIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + K IS++ C L TGRTHQIRV + L H IVGD
Sbjct: 197 KMTILK-YGGKEAVTHYKTLE--LFYKGSISMVECKLSTGRTHQIRVQLSHLKHSIVGDQ 253
Query: 203 LYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG +K + F RQALH++ L HP +N +++ LP D+ ++I+
Sbjct: 254 TYGNNDRKIAHSPPELKAKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPRDMEEIISL 313
>gi|374319827|ref|YP_005066326.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca 13-B]
gi|383751920|ref|YP_005427021.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca str. D-CWPP]
gi|360042376|gb|AEV92758.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca 13-B]
gi|379774934|gb|AFD20290.1| Ribosomal large subunit pseudouridine synthases RluD subfamily
protein [Rickettsia slovaca str. D-CWPP]
Length = 313
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 18/240 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+ LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 VALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ+K V RKY +VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIKQRQVIRKYKVLVWGVINPLEGVIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + K IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 197 KMTILK-YGGKEAVTHYKTLE--LFYKGSISMLECKLSTGRTHQIRVQLSHLKHSVVGDQ 253
Query: 203 LYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG +K + F RQALH++ L HP +N +++ LP D+ ++I+
Sbjct: 254 TYGNNDRKIAHSPPELKAKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPRDMEEIISL 313
>gi|319775954|ref|YP_004138442.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae F3047]
gi|329123818|ref|ZP_08252376.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
aegyptius ATCC 11116]
gi|317450545|emb|CBY86762.1| 23S rRNA pseudouridine synthase [Haemophilus influenzae F3047]
gi|327469305|gb|EGF14776.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
aegyptius ATCC 11116]
Length = 324
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP ++ VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGR HQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRMHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>gi|365922728|ref|ZP_09446911.1| putative ribosomal large subunit pseudouridine synthase D
[Cardiobacterium valvarum F0432]
gi|364572165|gb|EHM49724.1| putative ribosomal large subunit pseudouridine synthase D
[Cardiobacterium valvarum F0432]
Length = 320
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 149/237 (62%), Gaps = 22/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+II+ D +II+++K AGLVVHPA GN GTL + LL +P +PR GIVHRLDK+
Sbjct: 82 IPLNIIHADADIIVIDKPAGLVVHPAAGNPDGTLLNALLHHFPETAQLPRGGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+V+A++++++ HLV QL+ + R YLA+ + G I+ + R+P +R+KM +
Sbjct: 142 TSGLLVIARNLRAHAHLVRQLQERSMGRTYLALCYRYITAGGTIDQPLGRHPRDRLKMAI 201
Query: 147 SKNFNAKPALTYYERLATGIINKKH---ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + K A+T+Y I +++ +L+R NL+TGRTHQIRVH+ + +VGD L
Sbjct: 202 RE--DGKDAVTHYR------IEERYGDIATLLRVNLETGRTHQIRVHLAAQHNPLVGDPL 253
Query: 204 YG----------KKYSKSLI-FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG ++LI F RQALHA L L HP ++ + + LP D++KL+
Sbjct: 254 YGLANPPGKGIAADIRQALIDFPRQALHAAALTLHHPADDSEHTYASPLPADMAKLL 310
>gi|402702942|ref|ZP_10850921.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Rickettsia helvetica C9P9]
Length = 313
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 18/238 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
I LDIIYED ++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 IALDIIYEDEDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY A+VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLEGIIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMTV K + K A+T+Y+ L + IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 197 KMTVLK-YGGKEAVTHYKTLE--LFYGGTISMVECKLSTGRTHQIRVQLSHLKHSVVGDQ 253
Query: 203 LYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG +K + F RQALH++ L HP +N +++ LP DI K+I
Sbjct: 254 TYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPKDIQKII 311
>gi|332799431|ref|YP_004460930.1| RluA family pseudouridine synthase [Tepidanaerobacter acetatoxydans
Re1]
gi|332697166|gb|AEE91623.1| pseudouridine synthase, RluA family [Tepidanaerobacter
acetatoxydans Re1]
Length = 308
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 143/224 (63%), Gaps = 10/224 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI---NVPRAGIVHRL 83
I LDII+ED +I+++NK G+VV+PA GN SGTL + LL L R GIVHRL
Sbjct: 78 IPLDIIFEDRDIVVINKPRGMVVYPAPGNYSGTLINALLNHTKDLSARGGTMRPGIVHRL 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SG++VVAK+ ++I+L QLK V++ Y +VWG + + INA I R+P R
Sbjct: 138 DKDTSGVIVVAKNDTAHINLSKQLKSREVKKVYQTLVWGKVQEDKATINAPIGRHPIKRK 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V+ N+K A+T+++ L + + ++TGRTHQIRVHM+++GH IVGD
Sbjct: 198 EMAVTTK-NSKEAITHFKVLERF----DEFTFLEVAIETGRTHQIRVHMKFIGHPIVGDP 252
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
+Y +K I QALHAYKLG HP NN +++ LPDD+S
Sbjct: 253 IYSRKKVPFEI-KGQALHAYKLGFCHPSNNQYMEFEAPLPDDMS 295
>gi|365897522|ref|ZP_09435521.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3843]
gi|365421721|emb|CCE08063.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3843]
Length = 341
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 141/241 (58%), Gaps = 25/241 (10%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAGIVHR 82
I L I+YED +II+++K AGLVVHPA G+ +GTL + L+ ++ V R GIVHR
Sbjct: 91 IPLQIVYEDADIIVIDKPAGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVKRPGIVHR 150
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIP-KLNGMINAAIMRN 137
LDK++SGLMVVAK+ ++ L Q H ++R YLA WG+P + +G INA I R+
Sbjct: 151 LDKDTSGLMVVAKNDMAHQSLSAQFADHGRTGAMERGYLAFAWGVPHRQHGTINAPIDRH 210
Query: 138 PHNRIKMTVSKNFNAKPALTYYERLAT--GIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
PH R KM V + A+T+YE + G K SL+ C L+TGRTHQIRVH+ LG
Sbjct: 211 PHAREKMAV--RTRGREAVTHYEVQESFAGRDGKPVASLLACRLETGRTHQIRVHLSHLG 268
Query: 196 HGIVGDNLYGKKY------------SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
H ++GD +YG + + RQALHAY L + HP++ + W LP
Sbjct: 269 HPLLGDAVYGPHFKTKASQLGPAAQAALASLGRQALHAYLLVIEHPRSGELMHWESELPG 328
Query: 244 D 244
D
Sbjct: 329 D 329
>gi|293401501|ref|ZP_06645644.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452301|ref|ZP_09544216.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
gi|291305139|gb|EFE46385.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371966794|gb|EHO84276.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
Length = 305
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 155/253 (61%), Gaps = 24/253 (9%)
Query: 11 IKPKKNF---FLNKTEKKV----IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
IKPK + F ++ E + + LDI YED+++I++NK G+VVHPA+GN +GTL +
Sbjct: 55 IKPKDHITAVFCDEIEMEAKPEQMDLDIRYEDHDVIVINKPKGMVVHPAVGNQTGTLVNG 114
Query: 64 LLEIYPFL--IN-VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
LL L IN V R GIVHR+DK+++GL++VAK+ K++ L QL+ V R Y A+V
Sbjct: 115 LLYHCKDLSGINGVLRPGIVHRIDKDTTGLLIVAKNDKAHTALSKQLQNKTVNRLYYALV 174
Query: 121 WGIPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIR 176
G+ + + G I+A I R+ +R KM V+ NAK A T++ ER A H +L+
Sbjct: 175 HGVIEHDFGTIDAPIGRDVKDRQKMAVTAT-NAKDARTHFKVIERFA-------HYTLVE 226
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLK 236
C L+TGRTHQIRVHMQ++ H +VGD Y Y K++ Q LHA++L +HP N K+
Sbjct: 227 CRLETGRTHQIRVHMQYIKHPVVGDEKYS--YRKTMQTQGQLLHAHQLTFVHPTTNEKIT 284
Query: 237 WRINLPDDISKLI 249
LP + ++
Sbjct: 285 VEAELPKQFADIL 297
>gi|68248781|ref|YP_247893.1| 23S rRNA pseudouridine synthase D [Haemophilus influenzae 86-028NP]
gi|145635280|ref|ZP_01790983.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
influenzae PittAA]
gi|68056980|gb|AAX87233.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
influenzae 86-028NP]
gi|145267424|gb|EDK07425.1| ribosomal large subunit pseudouridine synthase D [Haemophilus
influenzae PittAA]
Length = 324
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP + VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPISEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEIMEWYAPLPDDFVELL 308
>gi|307564398|ref|ZP_07626939.1| pseudouridine synthase, RluA family [Prevotella amnii CRIS 21A-A]
gi|307346758|gb|EFN92054.1| pseudouridine synthase, RluA family [Prevotella amnii CRIS 21A-A]
Length = 361
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 154/274 (56%), Gaps = 39/274 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LD++YED+ ++++ K AGLVVHP GN GTL + +
Sbjct: 88 LMLDRPKHD---NTIEAEDIPLDVVYEDDSLMVVMKPAGLVVHPGAGNFHGTLINAIAWH 144
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L + F N P G+VHR+DK++SGL+++AK+ ++ L Q R Y+A+VWG
Sbjct: 145 LRGLASFDANDPEVGLVHRIDKDTSGLLLIAKTPEAKSSLGKQFFYKTTHRSYIALVWGN 204
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
I G I I R+P +R++MTV ++ KPA+T+Y ER + +LI C
Sbjct: 205 IVDEQGRIEGNISRDPKDRLRMTVFPPESDIGKPAVTHYKVIERFG-------YTTLIEC 257
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY---------SKSLIFN------RQALHAY 222
L+TGRTHQIR HM+ +GH + GD YG + K+ + N RQALHA
Sbjct: 258 VLETGRTHQIRAHMKHIGHPLFGDERYGGREILRGQRSSSYKAFVQNGFKICPRQALHAK 317
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
LG +HP ++ + LPDD+S LI KW
Sbjct: 318 TLGFVHPVTGEQMDFTSPLPDDLSALID----KW 347
>gi|406040098|ref|ZP_11047453.1| ribosomal large subunit pseudouridine synthase D (pseudouridylate
synthase) (Uracil hydrolyase) [Acinetobacter ursingii
DSM 16037 = CIP 107286]
Length = 349
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 145/237 (61%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK G+VVHP GN SGTL + LL YP + RAG+VHR+DK+
Sbjct: 112 IALDIVYEDDDILVINKPVGMVVHPGAGNSSGTLVNALLYHYPKSAELARAGLVHRIDKD 171
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+VVAK++++ L QL V R Y +V+G G I+ I R+P +RIKM +
Sbjct: 172 TSGLLVVAKNLEAQFSLSKQLADKSVYRIYDLIVYGNIVAGGTIDEPIKRHPVDRIKMAI 231
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ A+T+Y ER ++ + ++ L+TGRTHQIRVH ++GHG+VGD++
Sbjct: 232 LP--GGRDAVTHYNVKERF-------QNFTRVQAQLETGRTHQIRVHFSYIGHGLVGDSV 282
Query: 204 YGKK------YSKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
Y + S+ L F RQALHA KLGL+HP+ + + P+D S L+
Sbjct: 283 YMNRVRVPAGASERLNITLRAFKRQALHASKLGLVHPRTRENMMFEAPWPEDFSYLV 339
>gi|359797384|ref|ZP_09299968.1| ribosomal large subunit pseudouridine synthase D [Achromobacter
arsenitoxydans SY8]
gi|359364495|gb|EHK66208.1| ribosomal large subunit pseudouridine synthase D [Achromobacter
arsenitoxydans SY8]
Length = 360
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 10/248 (4%)
Query: 5 GYELII---IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
G EL + P+ F + ++ ++ E + I++NK AGLV HP GN SGTL
Sbjct: 111 GDELTVWAQPAPEARAFAPEP----VEFGVVAESPDWIVVNKPAGLVTHPGAGNWSGTLL 166
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL YP L V RAGIVHRLDK++SGLMVVA++ + HLV QL+ + R+Y+A+
Sbjct: 167 NGLLHRYPELAQVARAGIVHRLDKDTSGLMVVARNETAQTHLVRQLQARSMGREYVALAH 226
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLK 180
G G ++ AI R+P ++M+V + KPA+T Y G+ + ++ + C L+
Sbjct: 227 GWMAAAGRVDRAIGRDPRVPVRMSVERPVAPKPAITNYAPSRRGMADPGGRVTEVVCRLE 286
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
TGRTHQIRVHM LGH ++ D +YG K RQ LHA L P ++++
Sbjct: 287 TGRTHQIRVHMASLGHPLLADTIYGGKPIAGA--QRQMLHARALHFDDPGGAGEVQFTAA 344
Query: 241 LPDDISKL 248
+P D++++
Sbjct: 345 VPADMAQV 352
>gi|240850017|ref|YP_002971410.1| ribosomal large subunit pseudouridine synthase D [Bartonella
grahamii as4aup]
gi|240267140|gb|ACS50728.1| ribosomal large subunit pseudouridine synthase D [Bartonella
grahamii as4aup]
Length = 334
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 148/251 (58%), Gaps = 26/251 (10%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ I LDI++ED+ II++NK AGLVVHP GN +GTL + L+ + V R GIV
Sbjct: 77 EAIALDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIGGVKRPGIV 136
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMH----IVQRKYLAMVWGIPKLN-GMINAAIM 135
HRLDKN+SG+M+VAK+ ++ L Q H + R+Y A++WG P N I+A++
Sbjct: 137 HRLDKNTSGVMIVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLG 196
Query: 136 RNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
R+PHNR K V +N A+ A+T++ E+ + + SL+ C L+TGRTHQIRVH
Sbjct: 197 RSPHNRTKQAVIHKQNPYARHAVTHFSLLEKYGSHADSTSFASLLECRLETGRTHQIRVH 256
Query: 191 MQWLGHGIVGDNLYGKKY-SKSLI-----------FNRQALHAYKLGLIHPKNNLKLKWR 238
M +GH ++GD +YG + +KS FNRQALHA L HP + +
Sbjct: 257 MAHIGHPLIGDTVYGNAFKTKSNAFNPTIRNAIDQFNRQALHAASLSFEHPSTGKVMSFS 316
Query: 239 INLPDDISKLI 249
LP D++KLI
Sbjct: 317 APLPQDMAKLI 327
>gi|56460291|ref|YP_155572.1| 23S rRNA pseudouridine synthase D [Idiomarina loihiensis L2TR]
gi|56179301|gb|AAV82023.1| Pseudouridylate synthase [Idiomarina loihiensis L2TR]
Length = 322
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 143/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
++LDI+YED++I+++NK AGLVVHP G TL + LL P L VPRAGI+HRLDK+
Sbjct: 82 VELDIVYEDDDILVINKPAGLVVHPGAGAPDRTLLNGLLHYDPQLDLVPRAGIIHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVA+++ + LV+ ++ + R+Y A+ G+ GM++ I R+P R M V
Sbjct: 142 TTGLMVVARNVPAQTQLVSMMQDRDITREYEAVCNGVMTAGGMVDQPIGRHPTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ + KPA+T+Y L + H +L+R L++GRTHQIRVHM + H +VGD YG
Sbjct: 202 VQ--SGKPAVTHYRVLDR---YRAH-TLLRLRLESGRTHQIRVHMAHIRHPLVGDLTYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K+ L+ FNRQALHA LGL HP L++ + P D LI
Sbjct: 256 RPRPPKQAEDRLLQTLRGFNRQALHAASLGLHHPITGDWLEFNVPRPTDFQYLI 309
>gi|379019751|ref|YP_005295985.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hlp#2]
gi|376332331|gb|AFB29565.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hlp#2]
Length = 313
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 148/240 (61%), Gaps = 18/240 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+ LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 VALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY +VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQKQVIRKYKVLVWGVINPLEGVIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + K IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 197 KMTILK-YGGKEAVTHYKTLE--LFYKGSISMVECKLSTGRTHQIRVQLSHLKHSVVGDQ 253
Query: 203 LYGK-----KYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG YS K + F RQALH++ L HP +N +++ LP D+ ++I+
Sbjct: 254 TYGNNDRKIAYSPPELKTKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPRDMEEIISL 313
>gi|165933873|ref|YP_001650662.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Iowa]
gi|378721954|ref|YP_005286841.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Colombia]
gi|378723298|ref|YP_005288184.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Arizona]
gi|378724653|ref|YP_005289537.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hauke]
gi|379017130|ref|YP_005293365.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Brazil]
gi|379018438|ref|YP_005294673.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hino]
gi|165908960|gb|ABY73256.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Iowa]
gi|376325654|gb|AFB22894.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Brazil]
gi|376326978|gb|AFB24217.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Colombia]
gi|376328322|gb|AFB25560.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Arizona]
gi|376331004|gb|AFB28240.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hino]
gi|376333668|gb|AFB30901.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
rickettsii str. Hauke]
Length = 313
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 148/240 (61%), Gaps = 18/240 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+ LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 VALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY +VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQKQVIRKYKVLVWGVINPLEGVIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + K IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 197 KMTILK-YGGKEAVTHYKTLE--LFYKGSISMVECKLSTGRTHQIRVQLSHLKHSVVGDQ 253
Query: 203 LYGK-----KYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG YS K + F RQALH++ L HP +N +++ LP D+ ++I+
Sbjct: 254 TYGNNDRKIAYSPPELKAKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPRDMEEIISL 313
>gi|167040454|ref|YP_001663439.1| RluA family pseudouridine synthase [Thermoanaerobacter sp. X514]
gi|300914505|ref|ZP_07131821.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X561]
gi|307724259|ref|YP_003904010.1| RluA family pseudouridine synthase [Thermoanaerobacter sp. X513]
gi|166854694|gb|ABY93103.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X514]
gi|300889440|gb|EFK84586.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X561]
gi|307581320|gb|ADN54719.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X513]
Length = 305
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 11/227 (4%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
I LDI+YED++II++NK G+VVHPA GN SGTL + LL L IN + R GIVHRL
Sbjct: 80 IPLDILYEDDDIIVINKPQGMVVHPAPGNYSGTLVNALLYHCKNLSGINGILRPGIVHRL 139
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRI 142
DK++SG+MVVAK+ K++I L NQ+K V +KY+A+V G+ K G I A I R+P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKDEEGKIEAPIGRHPVDRK 199
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM V + + + ALT Y+ L K +L+ +KTGRTHQIRVHM ++GH IVGD+
Sbjct: 200 KMAVIE--DGRYALTLYKVLE----RFKENTLVEAVIKTGRTHQIRVHMAYIGHPIVGDH 253
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K K QALH+ LG +HP + +++ LP+ KLI
Sbjct: 254 VYGFKRQK-FKLEGQALHSSVLGFMHPTKGVYMEFEAPLPEYFKKLI 299
>gi|398805473|ref|ZP_10564446.1| pseudouridine synthase, RluA family [Polaromonas sp. CF318]
gi|398091509|gb|EJL81950.1| pseudouridine synthase, RluA family [Polaromonas sp. CF318]
Length = 344
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 141/251 (56%), Gaps = 12/251 (4%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
LI ++P K E + LDI++ED +++LNK AGLVVHPA GN SGTL + LL
Sbjct: 96 LIELRPTPQSQAFKPE--AMALDIVFEDAYLMVLNKPAGLVVHPAPGNWSGTLLNGLLAH 153
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM---VWGIP 124
P + +PRAGIVHRLDK++SGLMVVA+ LV + V R+Y+A+ W
Sbjct: 154 DPQAVFLPRAGIVHRLDKDTSGLMVVARQRTVMDQLVGLIAARDVSREYVALAHGAWQGA 213
Query: 125 KLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
K ++A I R+P NR++M V NA + L G KH L++C L TGR
Sbjct: 214 KTR-QVDAPIGRDPRNRLRMAVVDLEKNAGKTASTVVSLLHG--TDKHC-LVKCKLHTGR 269
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
THQIRVHM LGH +V D LYG + L RQ LHA++L HP +++R P
Sbjct: 270 THQIRVHMALLGHPLVSDELYGGAPAAGL--GRQGLHAWRLAFTHPVTGKVMEFRAEPPA 327
Query: 244 DISKLITFSGI 254
D+ + G+
Sbjct: 328 DLQAAMAGLGL 338
>gi|383482760|ref|YP_005391674.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
montanensis str. OSU 85-930]
gi|378935114|gb|AFC73615.1| ribosomal large subunit pseudouridine synthase D [Rickettsia
montanensis str. OSU 85-930]
Length = 313
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 18/240 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+ LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 VALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY +VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKVLVWGVINPLEGVIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + K IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 197 KMTILK-YGGKEAVTHYKTLE--LFYKGSISMVECKLSTGRTHQIRVQLSHLKHSVVGDQ 253
Query: 203 LYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG +K + F RQALH++ L HP +N +++ LP D+ ++I+
Sbjct: 254 TYGNNDRKIAHSPPELKAKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPRDMEEIISL 313
>gi|302345911|ref|YP_003814264.1| pseudouridine synthase, RluA family [Prevotella melaninogenica ATCC
25845]
gi|302150113|gb|ADK96375.1| pseudouridine synthase, RluA family [Prevotella melaninogenica ATCC
25845]
Length = 365
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 153/274 (55%), Gaps = 39/274 (14%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD----N 63
L++ +PK + N E + I LD++YED+ ++++NK AGLVVHP GN GTL + +
Sbjct: 93 LMLDRPKHD---NTIEAEDIPLDVVYEDDVLMVVNKPAGLVVHPGAGNFHGTLINAIAWH 149
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG- 122
L ++ F N P G+VHR+DK++SGL+V+AK+ + L Q R Y A+VWG
Sbjct: 150 LKDMPSFDPNDPEVGLVHRIDKDTSGLLVIAKTPDAKTALGKQFFNKTTHRSYNAIVWGN 209
Query: 123 IPKLNGMINAAIMRNPHNRIKMTV--SKNFNAKPALTYY---ERLATGIINKKHISLIRC 177
+ + G I I R+P +R++MTV + KPA+T+Y ER + +LI C
Sbjct: 210 MTEDEGRIEGNIARDPKDRLRMTVFPPDSEVGKPAVTHYRVIERFG-------YTTLIEC 262
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLY-------GKKYSKSLIF--------NRQALHAY 222
L+TGRTHQIR HM+ +GH + GD Y G++ S F NRQALHA
Sbjct: 263 ILETGRTHQIRAHMKHIGHPLFGDERYGGTEILRGQRSSTYKAFIRNCLALCNRQALHAR 322
Query: 223 KLGLIHPKNNLKLKWRINLPDDISKLITFSGIKW 256
LG +HP ++ + LP D+S LI KW
Sbjct: 323 TLGFVHPVTGEQMDFTSELPADLSALIE----KW 352
>gi|34581099|ref|ZP_00142579.1| sfhB protein homolog [Rickettsia sibirica 246]
gi|28262484|gb|EAA25988.1| sfhB protein homolog [Rickettsia sibirica 246]
Length = 313
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 18/240 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+ LDIIYED+++I++NK+AG+ VHP G+ TL + LL L ++ R GIVHRL
Sbjct: 77 VALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLHHTKNLSDIGSSERPGIVHRL 136
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK+++GLMVVAK+ K+++ L NQ++ V RKY +VWG I L G+I I R+ +R
Sbjct: 137 DKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKVLVWGVINPLEGIIKNNIGRSRSDRQ 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KMT+ K + K A+T+Y+ L + K IS++ C L TGRTHQIRV + L H +VGD
Sbjct: 197 KMTILK-YGGKEAVTHYKTLE--LFYKGSISMVECKLSTGRTHQIRVQLSHLKHSVVGDQ 253
Query: 203 LYGKK-----------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG +K + F RQALH++ L HP +N +++ LP D+ ++I+
Sbjct: 254 TYGNNDRKIAHSPPELKAKLIDFKRQALHSWYLSFTHPTSNEIMEFSCELPRDMEEIISL 313
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.141 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,018,157,789
Number of Sequences: 23463169
Number of extensions: 163582649
Number of successful extensions: 379469
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11657
Number of HSP's successfully gapped in prelim test: 1807
Number of HSP's that attempted gapping in prelim test: 336383
Number of HSP's gapped (non-prelim): 14459
length of query: 257
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 118
effective length of database: 9,097,814,876
effective search space: 1073542155368
effective search space used: 1073542155368
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 75 (33.5 bits)