BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8191
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8XYX8|RLUD_RALSO Ribosomal large subunit pseudouridine synthase D OS=Ralstonia
solanacearum (strain GMI1000) GN=rluD PE=3 SV=1
Length = 358
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 164/257 (63%), Gaps = 10/257 (3%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G + I + P++ N + + LD++YED+ ++++NK AGLVVHPA GN SGT+ +
Sbjct: 90 VCGGDRIEVVPQRADDENAFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLN 149
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP +PRAGIVHRLDK +SGLMVVA+++ + LV QL+ V+R YLA+VWG
Sbjct: 150 GLLHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWG 209
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
G I+A I R+P +R +M + + + KPA T+++ L + + +SL++C L+TG
Sbjct: 210 ETPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETG 269
Query: 183 RTHQIRVHMQWLGHGIVGDNLYGKKYSKS----------LIFNRQALHAYKLGLIHPKNN 232
RTHQIRVH + GH ++GD +Y + + + F RQALHA +LGL+HP +
Sbjct: 270 RTHQIRVHFESEGHPLLGDPVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASG 329
Query: 233 LKLKWRINLPDDISKLI 249
+ W +PDD+++L+
Sbjct: 330 QSVHWHAGVPDDLAELM 346
>sp|Q9JVB6|RLUD_NEIMA Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rluD PE=3 SV=1
Length = 374
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYEL-IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQIRVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L +PRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLAH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + GD +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +PDDI L++
Sbjct: 311 SGETVSFEAPIPDDIYHLLS 330
>sp|Q9K0B0|RLUD_NEIMB Ribosomal large subunit pseudouridine synthase D OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rluD PE=3 SV=1
Length = 374
Score = 203 bits (517), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/260 (44%), Positives = 160/260 (61%), Gaps = 19/260 (7%)
Query: 2 IISGYELII-IKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I G ++ + ++P + E + LDI+YED+ +I++NK AGLVVHPA GN +GTL
Sbjct: 79 MIGGEQICVTVRPSEENLAFVPEP--MALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTL 136
Query: 61 FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV 120
+ LL P L VPRAGIVHRLDK +SGLMVVAK++ + LV QL+ V+R Y A+
Sbjct: 137 LNGLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVA 196
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
GI +G I I R+PHNR+KM V K F KPA+T+ + L + + S I C+L+
Sbjct: 197 NGIVPFDGKIETQIGRDPHNRLKMAVVK-FGGKPAVTHVKVLERYLTH----SYIECSLE 251
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG----------KKYSKSLIFNRQALHAYKLGLIHPK 230
TGRTHQIRVHM+ H + D +YG K+ KSL RQALHAY+L HP+
Sbjct: 252 TGRTHQIRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSL-GARQALHAYRLSFTHPE 310
Query: 231 NNLKLKWRINLPDDISKLIT 250
+ + + +P+DI L++
Sbjct: 311 SGETVSFEAPIPNDIYHLLS 330
>sp|Q82WZ5|RLUD_NITEU Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3
SV=1
Length = 344
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 150/233 (64%), Gaps = 12/233 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
+ + I L I++ED+ +II++K AGLVVHP GN GTL + LL P L VPRAGIVHR
Sbjct: 103 QAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQVPRAGIVHR 162
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL+VVAK+I++ L QL+ V+R YLA+V G + +G+++A I R+P +R
Sbjct: 163 LDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVDAPIGRHPIHRT 222
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V + N KPA T+Y L + +L+ C+L+TGRTHQIRVH+ +GH + GD
Sbjct: 223 RMAVVQ--NGKPARTHYRVLEKFTAS----TLLHCSLETGRTHQIRVHLLSIGHPLAGDP 276
Query: 203 LYGKKYSKSLIFN------RQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG+ + RQALHA++L L HP + L W LPDD++ L+
Sbjct: 277 VYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLPDDMAALL 329
>sp|Q9PET9|RLUD_XYLFA Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1
Length = 331
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + +LNK AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLDILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 208 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 259 YGGSLKLPKVGTDALVVMLRGFKRQALHAEVLEFLHPVGALPVRIVAPVPEDLCQLLA 316
>sp|Q87AR7|RLUD_XYLFT Ribosomal large subunit pseudouridine synthase D OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3
SV=1
Length = 331
Score = 193 bits (491), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED + ++NK AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G +NAAI R+P +R++M V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMEV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
S K A+T+Y ER + H +L C L TGRTHQIRVHM L H IVGD L
Sbjct: 208 SD--TGKEAVTHYRLRERF------RAHTAL-ECRLDTGRTHQIRVHMAHLRHPIVGDRL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP L ++ +P+D+ +L+
Sbjct: 259 YGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLLA 316
>sp|P65836|RLUD_SALTY Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluD PE=1 SV=2
Length = 326
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>sp|P65837|RLUD_SALTI Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhi GN=rluD PE=3 SV=2
Length = 326
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L++ + R+Y A+ G G +N I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+V KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMSVHP--MGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDQ 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S+ I F+RQALHA L L HP + ++++W +P D+ LI
Sbjct: 252 VYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIPQDMVDLI 309
>sp|Q8ZBV7|RLUD_YERPE Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis
GN=rluD PE=3 SV=1
Length = 325
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 144/234 (61%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YEDN+I+++NK GLVVHP GN GT+ + LL YP +++VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAV 201
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG- 205
+ KPA T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD LYG
Sbjct: 202 --HPMGKPATTHY-RIMEHF--RAHTRL-RLRLETGRTHQIRVHMSHINHPLVGDQLYGG 255
Query: 206 -----KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
K S S I F+RQALHA L L HP ++++W LP+D+ +LI
Sbjct: 256 RPRPPKGASDSFIAILRGFDRQALHATMLRLYHPIRGIQMEWHAALPEDMVELI 309
>sp|P33643|RLUD_ECOLI Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli (strain K12) GN=rluD PE=1 SV=4
Length = 326
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>sp|Q8P682|RLUD_XANCP Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rluD PE=3 SV=1
Length = 331
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+++YED+ +++++K AGLVVHP GN GTL + LL P L VPRAG+VHRLDK+
Sbjct: 88 IPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G +A I R+P +R+KM V
Sbjct: 148 TSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + +L+ F RQALHA L +HP + ++ +P+D+ +L++
Sbjct: 259 YGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPIRASAPVPEDLQRLMS 316
>sp|P65835|RLUD_SHIFL Ribosomal large subunit pseudouridine synthase D OS=Shigella
flexneri GN=rluD PE=3 SV=2
Length = 326
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>sp|P65834|RLUD_ECOL6 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluD
PE=3 SV=2
Length = 326
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>sp|Q8X9F0|RLUD_ECO57 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O157:H7 GN=rluD PE=3 SV=3
Length = 326
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>sp|Q8PHN2|RLUD_XANAC Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1
Length = 331
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 144/238 (60%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L ++YED ++++++K AGLVVHP GN TL + LL P L +VPRAG+VHRLDK+
Sbjct: 88 IPLSVLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKD 147
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SG+MVVA+++++ LV QL V R+YLA+V G G NA I R+P +R+KM V
Sbjct: 148 TSGVMVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ + A+T+Y ER + H +L C L+TGRTHQIRVHM L IVGD L
Sbjct: 208 RD--DGRDAVTHYRLRERF------RAHTAL-ECRLETGRTHQIRVHMAHLKSPIVGDPL 258
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K + L+ F RQALHA L +HP + ++ +P D+ +L+T
Sbjct: 259 YGGALKLPKGATDELVHELRTFKRQALHAETLEFLHPVSGEPVRASAPVPADLQRLMT 316
>sp|P50513|RLUD_ZYMMO Ribosomal large subunit pseudouridine synthase D OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rluD PE=3 SV=2
Length = 317
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 146/237 (61%), Gaps = 14/237 (5%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN----VPRAG 78
E + I L+I++ED ++++NK AG+VVHPA GN TL + LL ++ V R G
Sbjct: 76 EPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPG 135
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNP 138
IVHR+DK++SGL+VVAK+ ++ L Q H + R+Y A+V G P L G ++A + R+
Sbjct: 136 IVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGHVDAPLARSS 195
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
NR KM + + K A+T+Y R+ T + K+ SLI C L+TGRTHQ+RVHM +GH +
Sbjct: 196 VNRQKMAIVSDGRGKRAVTHY-RMITPL---KNASLIECRLETGRTHQVRVHMSSIGHSL 251
Query: 199 VGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+GD +YG+ +SL F RQALHA LG IHP + ++ + +P D+ L
Sbjct: 252 LGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDMQLLF 308
>sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluD PE=3 SV=2
Length = 320
Score = 184 bits (466), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 17/236 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+L+I+YED I++++K AGLVVHPA G+ GTL + LL P + NVPRAGIVHRLDK+
Sbjct: 81 IELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+++++ LV QL+ V R Y A+V G+ G I+A I R+ R KM V
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
K A+++Y L + H + R L+TGRTHQIRVHM +G+ +VGD +YG
Sbjct: 201 VD--AGKVAVSHYRVLER---FRAH-THTRVKLETGRTHQIRVHMSHIGYPLVGDPVYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
++ S++L+ F RQALHA L L HP +++KW LP+D L++
Sbjct: 255 RFRIPPVASQTLVQTLREFPRQALHARFLELDHPATGVRMKWESPLPEDFLWLLSL 310
>sp|Q9CKA6|RLUD_PASMU Ribosomal large subunit pseudouridine synthase D OS=Pasteurella
multocida (strain Pm70) GN=rluD PE=3 SV=1
Length = 324
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 143/244 (58%), Gaps = 23/244 (9%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
+ E + + L+I+YED++I+++NK VVHP GN SGT+ + LL YP + VPRAGI
Sbjct: 74 TRFEPENLPLNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGI 133
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+I + LV L+ + R+Y A+ GI GM++ + R+P
Sbjct: 134 VHRLDKDTTGLMVIAKTIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMVDQPMARHPT 193
Query: 140 NRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H
Sbjct: 194 KRTHMAVHP--MGKPAVTHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAH 244
Query: 197 GIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
++GD YG K S+ L+ F RQALHA L L HP ++W LP D
Sbjct: 245 PLLGDQTYGGRPRPPKNASEELMQTLRDFKRQALHAIMLRLAHPITGELMEWHAPLPTDF 304
Query: 246 SKLI 249
+L+
Sbjct: 305 VELV 308
>sp|P44445|RLUD_HAEIN Ribosomal large subunit pseudouridine synthase D OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluD PE=3 SV=1
Length = 324
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 142/238 (59%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED++II++NK LVVHP GN +GT+ + LL YP ++ VPRAGIVHR
Sbjct: 77 EAENIPLNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + LV L+ + R+Y A+ GI G ++ + R+ R
Sbjct: 137 LDKDTTGLMVVAKTIPAQTKLVRDLQKRKITREYEAVASGIMTKGGTVDQPMARHATKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y + N ++ + +R L+TGRTHQIRVHM + H ++GD
Sbjct: 197 LMAVHP--MGKPAVTHYRIME----NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQ 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ + F RQALHA L L HP ++W LPDD +L+
Sbjct: 251 TYGGRPRPPKNASEDFMEVLRNFKRQALHAVMLRLAHPITGEMMEWYAPLPDDFVELL 308
>sp|P59838|RLUD_BLOFL Ribosomal large subunit pseudouridine synthase D OS=Blochmannia
floridanus GN=rluD PE=3 SV=1
Length = 321
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 162/262 (61%), Gaps = 24/262 (9%)
Query: 7 ELIIIKPKKNFFLNKTEKKV---IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
ELI IK N + K+E V I L+IIYEDN+I+++NK++ +VVHP IG+ GT+ +
Sbjct: 61 ELIEIKYINNNDICKSEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNA 120
Query: 64 LLEIYPFLINVPR-AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL YP ++ + + AGIV RLDK+++GLM++AK++ +Y +L+ K+ V ++Y A+V+G
Sbjct: 121 LLYRYPSILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYG 180
Query: 123 IPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
N G++N + R+ R M+V ++ K A+TYY + K H S +R NLKT
Sbjct: 181 KFTSNAGVVNQPMRRHFAKRTFMSV--HYTGKSAVTYYSVVEEF---KAH-SRVRINLKT 234
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG--------KKYSKS-----LIFNRQALHAYKLGLIH 228
GRTHQIRVHM ++ H +VGD Y KK S L FNRQALHA L L+H
Sbjct: 235 GRTHQIRVHMAYINHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLH 294
Query: 229 PKNNLKLKWRINLPDDISKLIT 250
P +++KW LP DI +LI
Sbjct: 295 PITQVQMKWNAPLPQDILQLIA 316
>sp|Q9L7A7|RLUD_HAEDU Ribosomal large subunit pseudouridine synthase D OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluD PE=3 SV=2
Length = 325
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I++ED++III+NK LVVHP GN GT+ + LL YP + VPRAGI+HR
Sbjct: 78 EPQNIPLNIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYPPIAEVPRAGIIHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + HLV L+ + R+Y A+ GI G ++ + R+P R
Sbjct: 138 LDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M V KPA+T+Y ER ++ + +R L+TGRTHQIRVHM + H ++
Sbjct: 198 AMAVHP--MGKPAITHYRIMERF-------RNYTRLRLRLETGRTHQIRVHMAHIAHPLL 248
Query: 200 GDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD LYG K S++ + F RQALHA L L HP N ++ LP D +L
Sbjct: 249 GDQLYGGRPRPPKGSSEAFLTVLRAFQRQALHATMLRLEHPINGELIECHAPLPADFVEL 308
Query: 249 I 249
I
Sbjct: 309 I 309
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 142/224 (63%), Gaps = 9/224 (4%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI--NVPRAGIVHR 82
+ I LD++YED +I ++NK AG+VVHPA G+ GTL + LL YP L R GIVHR
Sbjct: 87 EPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLAIGGELRPGIVHR 146
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LD+++SGL+V+A+ ++ LV+Q + +++ Y A+V G P G I+A I R+P +R+
Sbjct: 147 LDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDAPIGRDPRDRL 206
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+M V + +PA T+Y L T SL+ L+TGRTHQIRVH++ LG+ IVGD
Sbjct: 207 RMAVVP--DGRPARTHYRLLDT----FGDYSLLEVQLETGRTHQIRVHLRHLGYPIVGDP 260
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
+YG + S L +RQ LHA LGL+HP++ ++ LP D+
Sbjct: 261 VYGPRRSH-LHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADLQ 303
>sp|Q89AD9|RLUD_BUCBP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rluD PE=3 SV=1
Length = 317
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 147/243 (60%), Gaps = 17/243 (6%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI 79
N + + I L++IYED++I+++NK VVHP GN SGTL + LL N+PRAGI
Sbjct: 76 NDYQAENIFLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNALLHRDSTFFNIPRAGI 135
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
VHRLDK+++GLMV+AK+ SY+ L++Q+K V R+Y A+V+G G I +I+RNP
Sbjct: 136 VHRLDKDTTGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKVISGGTIVKSIIRNPI 195
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
R M V+K K A+T+Y R+ + H+ +I L+TGRTHQIR HM ++ +V
Sbjct: 196 KRTTMIVNK--CGKRAITHY-RILKRFTHHTHLKII---LETGRTHQIRTHMLYINFPLV 249
Query: 200 GDNLYGKKY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
GD YG K+ S +L+ F RQALHA +L L HP ++W LP D+ L
Sbjct: 250 GDKTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNSTLPRDMLNL 309
Query: 249 ITF 251
I
Sbjct: 310 IAL 312
>sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus
subtilis (strain 168) GN=ylyB PE=3 SV=3
Length = 303
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--IN-VPRAGIVHRL 83
+ LDI YED +++++NK G+VVHPA G+L+GTL + L+ L IN V R GIVHR+
Sbjct: 78 MDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIVHRI 137
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK+ ++ LVNQL V RKY A+V G I +G I+A I R+ +R
Sbjct: 138 DKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQ 197
Query: 143 KMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
MTV++ + K A+T++ ER + +L+ C L+TGRTHQIRVHM+++G +
Sbjct: 198 SMTVTR--DGKNAVTHFHVLERF-------QDFTLVECQLETGRTHQIRVHMKYIGFPLA 248
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
GD YG + K++ FN QALHA LG HP+ +++ LP+D+++LI
Sbjct: 249 GDPKYGPR--KTIDFNGQALHAGVLGFDHPRTGEYVEFEAPLPEDMAELI 296
>sp|Q87S65|RLUD_VIBPA Ribosomal large subunit pseudouridine synthase D OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluD PE=3 SV=1
Length = 325
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 140/234 (59%), Gaps = 17/234 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++II++NK VVHP G GT+ + LL YP + VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHHYPDIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGGKVDQPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V+ KPA+T+Y R+A ++H + IR L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 LMAVAP--LGKPAVTHY-RVAEHF--REH-TRIRLRLETGRTHQIRVHMSYLQHPLLGDT 251
Query: 203 LYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
YG + S+ L F+RQALHA L HP +L++ +PDD+
Sbjct: 252 AYGGRARIPTGASQELTDMIRGFDRQALHAVMLRFEHPITGEELEFHAPVPDDM 305
>sp|Q9KU20|RLUD_VIBCH Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluD PE=3 SV=1
Length = 324
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 141/237 (59%), Gaps = 17/237 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + + L+I+YED++II++NK VVHP G T+ + LL Y + VPRAGIVHR
Sbjct: 78 EAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ V R+Y A+V G GMI+ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMTAGGMIDKPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M+VS K A+T+Y R+A ++H L R L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 LMSVSP--MGKHAVTHY-RVAEHF--REHTRL-RLRLETGRTHQIRVHMAYLQHPLLGDT 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG K ++ L F+RQALHA L HP +L++ +PDD+ ++
Sbjct: 252 AYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPVPDDMVEM 308
>sp|Q8DEV0|RLUD_VIBVU Ribosomal large subunit pseudouridine synthase D OS=Vibrio
vulnificus (strain CMCP6) GN=rluD PE=3 SV=1
Length = 325
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 141/237 (59%), Gaps = 17/237 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED++I+++NK VVHP G GT+ + LL P + VPRAGIVHR
Sbjct: 78 EAQDIPLDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFHCPEVAEVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIGRMTAGGKVDKPIGRHATKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M VS KPA+T++ R+A ++H + IR L+TGRTHQIRVHM +L H ++GD
Sbjct: 198 LMAVSP--MGKPAVTHF-RVAEHF--REH-TRIRLRLETGRTHQIRVHMSYLQHPLLGDA 251
Query: 203 LYGKK------YSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
YG + S+ + F+RQALHA L HP ++++ +PDD+ +L
Sbjct: 252 AYGGRARIPAGASEDVTAMIRNFDRQALHAVMLRFEHPITGEEMEFHAPVPDDMVEL 308
>sp|P57481|RLUD_BUCAI Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rluD PE=3 SV=1
Length = 312
Score = 167 bits (423), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 155/259 (59%), Gaps = 20/259 (7%)
Query: 3 ISGYELIIIKP-KKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
I G E + I P K+ ++ E I LDI+YED++I+I+NK AGLVVHP GN SGT+
Sbjct: 59 ILGGETLTIHPFSKDLLVDIPEN--IFLDIVYEDSDILIINKPAGLVVHPGSGNKSGTIL 116
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ LL Y ++PRAGIVHRLDK++SGLMV+AK+I SY HL+ LK + R+Y +V
Sbjct: 117 NALLYHYKNSKDLPRAGIVHRLDKDTSGLMVIAKNIFSYNHLLLLLKEKKIIREYEGIVH 176
Query: 122 GIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181
G G IN IMR+ + R M V + KP++T+Y+ L+ + HI++ L+T
Sbjct: 177 GKMIAGGTINKPIMRHYNRRTCMMV--HHLGKPSVTHYKVLSRFKFH-THIAI---RLET 230
Query: 182 GRTHQIRVHMQWLGHGIVGDNLYG-----------KKYSKSLIFNRQALHAYKLGLIHPK 230
GRTHQIRVHM + + +VGD Y KK +K F RQALHA L L HP
Sbjct: 231 GRTHQIRVHMLHIKYPLVGDPCYSGFKIQSNYRKDKKTNKIYKFPRQALHANHLSLHHPI 290
Query: 231 NNLKLKWRINLPDDISKLI 249
+ W + LP DI +L+
Sbjct: 291 KKNVMSWTVPLPQDIQELL 309
>sp|Q8K9E9|RLUD_BUCAP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluD PE=3 SV=1
Length = 315
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 22/239 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I L+ IYED+ I+I+NK GLVVHP GN GT+ + LL Y + ++PR GI+HRLDK+
Sbjct: 82 IALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGLMV+AK+I SY LV LK + RKY ++ G G++N IMR+P RI MT
Sbjct: 142 TSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHPFKRICMTT 201
Query: 147 SKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
K ++T+Y+ IIN+ K + + L+TGRTHQIRVHM +G+ ++GD LYG
Sbjct: 202 DS--LGKKSITHYK-----IINRFKFHTHVSFRLETGRTHQIRVHMLHIGYPLLGDPLYG 254
Query: 206 -------------KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
Y K +F RQALHA + IHP + W +LP D+ ++ +
Sbjct: 255 GIDYGCNYFQENRNIYRKFNLF-RQALHADYIEFIHPFTQKVMSWSASLPQDMKDILLY 312
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 138/230 (60%), Gaps = 9/230 (3%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLIN---VPRAGIVHRL 83
I LDI+YED ++II+NK AGLVVHP G+ GT+ + LL P L V R GIVHRL
Sbjct: 96 IPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRL 155
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRI 142
DK+++G MVVAK+ + +L QLK +R Y +V+G PK + G +N + R+P +R
Sbjct: 156 DKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQ 215
Query: 143 KMT-VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
KM V + A+T++ RL I N S + L+TGRTHQIRVH + +GH +VGD
Sbjct: 216 KMGIVPVEKGGREAVTHW-RLLERIGNH---SWLEFQLETGRTHQIRVHSKQMGHPLVGD 271
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
NLY S ++ QALHA++L LIHP + + +P KL+ +
Sbjct: 272 NLYTSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMPAHFEKLLVY 321
>sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723
PE=3 SV=1
Length = 327
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 32/245 (13%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL-----EIYPFLINVPRAGIVH 81
I + I+YED+++++++K AG+VVHPA GN +GTL + +L + R GIVH
Sbjct: 75 IPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPGIVH 134
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHN 140
RLDK++SGL+++AK+ + L Q V++ Y A+VWG+PK +G I I R+ N
Sbjct: 135 RLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRSHKN 194
Query: 141 RIKMTVSKNF-----NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
R V NF K A+T Y+ + + + SL+ L TGRTHQIRVH+Q LG
Sbjct: 195 R---KVMANFPYEGAEGKHAITDYQVVE----DLGYFSLMDVTLHTGRTHQIRVHLQHLG 247
Query: 196 HGIVGDNLYGKKYSKSLIF--------------NRQALHAYKLGLIHPKNNLKLKWRINL 241
H I+GD YG ++L F +RQALHA L P L + L
Sbjct: 248 HSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGEPLSFSAPL 307
Query: 242 PDDIS 246
P+D+
Sbjct: 308 PEDME 312
>sp|Q5Z8P2|PUS2_ORYSJ RNA pseudourine synthase 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os06g0717400 PE=2 SV=1
Length = 445
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 140/293 (47%), Gaps = 66/293 (22%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLI----- 72
+ E + I LDI+YED+ ++++NK A +VVHPA GN +GTL + +L +I F
Sbjct: 132 RAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNS 191
Query: 73 ---NVP-----------------------------RAGIVHRLDKNSSGLMVVAKSIKSY 100
P R GIVHRLDK +SGL+VVAK S+
Sbjct: 192 IDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSH 251
Query: 101 IHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVSKNFN---AKPAL 156
L Q K+H ++R Y+++ G P N G I I R+P+NRI+M + A+ A
Sbjct: 252 AQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGHRYARHAA 311
Query: 157 TYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIF-- 214
+ Y+ + +L+ L+TGRTHQIR H ++LG ++GD YG S +L
Sbjct: 312 SRYK--VREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLR 369
Query: 215 ------------------NRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+R LHA LG HP + L++ PDD ++++
Sbjct: 370 PRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVL 422
>sp|Q3ECD0|PUS2_ARATH RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g76050 PE=2 SV=1
Length = 430
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 58/285 (20%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF---------- 70
K E + I LDI+YED ++++NK A +VVHPA GN +GTL + +L
Sbjct: 140 KAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEE 199
Query: 71 --------------LINVP-------RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKM 109
+ P R GIVHRLDK ++GL+VVAK S+ HL Q K+
Sbjct: 200 DDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKL 259
Query: 110 HIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRIKMTV----SKNFNAKPALTYYERLAT 164
H ++R Y+++ G+P G I I R+ NRI+M + A+ A + Y+ + T
Sbjct: 260 HTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIET 319
Query: 165 GIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG-----------KKYSKS-- 211
+L+ L+TGRTHQIR H +++G ++GD +YG K+ S+S
Sbjct: 320 --FAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQ 377
Query: 212 -----LI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
LI +R LHA LG HP +K+ P D+++++
Sbjct: 378 EEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIV 422
>sp|O67638|Y1758_AQUAE Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex
aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1
Length = 316
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 130/235 (55%), Gaps = 14/235 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL---EIYPFLINVPRAGIVHRL 83
I ++IIYED +I ++ K GLVVHP+ G SGTL + LL + + V R GIVHRL
Sbjct: 80 IPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIVHRL 139
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRI 142
DK ++G+MV+AK+ ++ +LV Q + ++ Y +V G+ K + G I+ I R+P +R
Sbjct: 140 DKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARHPVDRK 199
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+ V K K ALT Y L K I+L++ + TGRTHQIRVH +GH ++GD
Sbjct: 200 RFWVRKE--GKEALTEYWVLKR--YEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLGDR 255
Query: 203 LYGKKYSK------SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITF 251
YG K S SL+ L AY LG HP + + I P+ + ++
Sbjct: 256 TYGFKSSSVPKELLSLMGECNMLIAYHLGFYHPTKGEWMVFEIEEPETFKSVYSW 310
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 138/251 (54%), Gaps = 19/251 (7%)
Query: 9 IIIKPKKNFFLNKTEKKVI-------KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+I+K F++ E + +LDI++EDN ++I+NK AG+ HP +GTL
Sbjct: 56 MIVKKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGTLA 115
Query: 62 DNLLEIYPFLINVPRAGI--VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAM 119
+ L Y + IN + VHRLD+++SG +V AK ++ L QL+ ++R Y A+
Sbjct: 116 N--LIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAI 173
Query: 120 VWG-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
G + G IN+ I R+ + + VS + A+T+++ +A+ K+ +SL+
Sbjct: 174 AEGKLRTKKGTINSPIGRDRSHPTRRRVSPG--GQTAVTHFKVMASNA--KERLSLVELE 229
Query: 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
L+TGRTHQIRVH+ LGH + GD+LYG S + NRQALHA K+ +HP + +
Sbjct: 230 LETGRTHQIRVHLASLGHPLTGDSLYG---GGSKLLNRQALHANKVQAVHPITDELIVAE 286
Query: 239 INLPDDISKLI 249
P D+ L
Sbjct: 287 APFPADMKNLC 297
>sp|O25441|Y745_HELPY Uncharacterized RNA pseudouridine synthase HP_0745 OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=HP_0745 PE=3 SV=1
Length = 327
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 141/249 (56%), Gaps = 11/249 (4%)
Query: 4 SGYELIIIKPKKNFFLNKTEKKVIKLDI--IYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
G E+ ++ PK K KK + L+I I+ED ++++LNK LVVH A+ TL
Sbjct: 54 EGDEITLLTPK---ITPKPLKKELDLEIEVIFEDEDLLVLNKPPNLVVHKALSVKEPTLV 110
Query: 62 DNLLEIYPFLIN----VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117
D LE + ++ R GIVHRLDK++SG +V+AK+ +++HL QLK ++ R Y+
Sbjct: 111 D-WLEFKNYELSNLGLKERYGIVHRLDKDTSGGIVIAKNNFTHVHLSEQLKTKMMGRYYI 169
Query: 118 AMVWGIPKLNGM-INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIR 176
A++ K M + + RNP+NR+KM K + + + + ++ +++LI
Sbjct: 170 ALLSTPLKEEKMSVECYLTRNPNNRLKMIALKAVKKEKSRYSKSEFISLLTSQNNLNLIG 229
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLK 236
L TGRTHQIR H+++L I+GDNLYG + R LHAY + HP++ KL+
Sbjct: 230 AKLFTGRTHQIRAHLEYLNRHIIGDNLYGLNGALPKEEIRIMLHAYLIEFKHPRSEQKLR 289
Query: 237 WRINLPDDI 245
+++ L D+
Sbjct: 290 FKVPLLKDM 298
>sp|O31613|YJBO_BACSU Uncharacterized RNA pseudouridine synthase YjbO OS=Bacillus
subtilis (strain 168) GN=yjbO PE=3 SV=1
Length = 283
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 136/244 (55%), Gaps = 10/244 (4%)
Query: 7 ELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
+L+I+K + + + LDI+YED ++++NK + P+ + SG++ + +++
Sbjct: 44 DLLIVKFPEEQVSETLLAEPVPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIID 103
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPK 125
Y +V RLD+++SG+M+VAK ++ L + K +V+R+Y A+V G + +
Sbjct: 104 HYQTTGVRATVHLVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQ 163
Query: 126 LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
+ G ++A I R+P + I+ TV+ + K +Y A ++ + L+TGRTH
Sbjct: 164 MEGTVDAPIGRHPDSIIERTVTPD-GQKAVTHFYVTCA-----NDDMTSVALQLETGRTH 217
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
QIRVHM +LGH + GD LYG + RQALH+ L IHP +++ LP D+
Sbjct: 218 QIRVHMSYLGHPLCGDTLYGGTRQE---IGRQALHSEHLSFIHPLTQENMRFHAPLPQDM 274
Query: 246 SKLI 249
SKLI
Sbjct: 275 SKLI 278
>sp|Q9ZL98|Y745_HELPJ Uncharacterized RNA pseudouridine synthase jhp_0682 OS=Helicobacter
pylori (strain J99) GN=jhp_0682 PE=3 SV=1
Length = 327
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 4/223 (1%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV---PRAGIVHRL 83
+++++I+ED ++++LNK LVVH A TL D L L N+ R GIVHRL
Sbjct: 76 LEIEVIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKERYGIVHRL 135
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM-INAAIMRNPHNRI 142
DK++SG +V+AK+ +++ L QLK ++ R Y+A++ K M + + RNP+NR+
Sbjct: 136 DKDTSGGIVIAKNNFTHVCLSEQLKTKMMGRYYIALLSTPLKEEKMSVECYLTRNPNNRL 195
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
KM K + + + + ++ + LI L TGRTHQIR H+++L I+GDN
Sbjct: 196 KMIALKAAKKEKSRYSKSEFTSLLTSQNGMDLIGAKLFTGRTHQIRAHLEYLNRHIIGDN 255
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI 245
LYG S R LHAY + HP++ KL++++ L D+
Sbjct: 256 LYGLNGVLSKEEIRIMLHAYLIEFKHPRSEQKLRFKVPLLKDM 298
>sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rluD PE=3 SV=2
Length = 326
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 122/214 (57%), Gaps = 12/214 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL-EIYPFLINVP----RAGIVH 81
I + IIYED+ +I+LNK G++ HP I + T+ + LL I IN R GIVH
Sbjct: 82 IPIAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVH 141
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHN 140
RLDK++SG+++ AK+I + L Q K + Y+A+V G G I + I R+ HN
Sbjct: 142 RLDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIAIVKGNFNSFFGSIESFIDRDKHN 201
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
R K +VSK+ K ALT Y L +N SL+ KTGRTHQ+RVHM++L I+G
Sbjct: 202 RKKFSVSKD-RGKKALTEYRLL----LNFGEYSLLALKPKTGRTHQLRVHMKYLNFPILG 256
Query: 201 DNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLK 234
D +YG + SL LH+YKL + KN+ K
Sbjct: 257 DEVYG-RVDGSLKKITLMLHSYKLEIDVGKNSFK 289
>sp|P0A5T3|Y1567_MYCBO Uncharacterized RNA pseudouridine synthase Mb1567 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1567 PE=3
SV=1
Length = 308
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 14/251 (5%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++SG L + P+ L T + + I+Y D++I+ ++K A + H ++G T+
Sbjct: 54 LVSGALLQVRLPEAPAPLQNTPIDIEGMTILYSDDDIVAVDKPAAVAAHASVGWTGPTVL 113
Query: 62 DNLLEIYPFLINVP----RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117
L + I R GIVHRLD +SG+MVVA S ++Y L K V ++Y
Sbjct: 114 GGLAAAG-YRITTSGVHERQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYH 172
Query: 118 AMVWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIR 176
A+V G P +G I+A I R+ + K ++K N + +LT+Y+ L + SL+
Sbjct: 173 ALVQGHPDPSSGTIDAPIGRHRGHEWKFAITK--NGRHSLTHYDTLEAFVA----ASLLD 226
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYGK--KYSKSLIFNRQALHAYKLGLIHPKNNLK 234
+L+TGRTHQIRVH L H GD +YG K +K L +RQ LHA L HP + +
Sbjct: 227 VHLETGRTHQIRVHFAALHHPCCGDLVYGADPKLAKRLGLDRQWLHARSLAFAHPADGRR 286
Query: 235 LKWRINLPDDI 245
++ P D+
Sbjct: 287 VEIVSPYPADL 297
>sp|P0A5T2|Y1540_MYCTU Uncharacterized RNA pseudouridine synthase Rv1540/MT1592
OS=Mycobacterium tuberculosis GN=Rv1540 PE=3 SV=1
Length = 308
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 14/251 (5%)
Query: 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
++SG L + P+ L T + + I+Y D++I+ ++K A + H ++G T+
Sbjct: 54 LVSGALLQVRLPEAPAPLQNTPIDIEGMTILYSDDDIVAVDKPAAVAAHASVGWTGPTVL 113
Query: 62 DNLLEIYPFLINVP----RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117
L + I R GIVHRLD +SG+MVVA S ++Y L K V ++Y
Sbjct: 114 GGLAAAG-YRITTSGVHERQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYH 172
Query: 118 AMVWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIR 176
A+V G P +G I+A I R+ + K ++K N + +LT+Y+ L + SL+
Sbjct: 173 ALVQGHPDPSSGTIDAPIGRHRGHEWKFAITK--NGRHSLTHYDTLEAFVA----ASLLD 226
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYGK--KYSKSLIFNRQALHAYKLGLIHPKNNLK 234
+L+TGRTHQIRVH L H GD +YG K +K L +RQ LHA L HP + +
Sbjct: 227 VHLETGRTHQIRVHFAALHHPCCGDLVYGADPKLAKRLGLDRQWLHARSLAFAHPADGRR 286
Query: 235 LKWRINLPDDI 245
++ P D+
Sbjct: 287 VEIVSPYPADL 297
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
LDI+YED +I+++NK GL+ HP N S +L L F N +VHRLD+++S
Sbjct: 80 LDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAAL----FHCNHQPVFLVHRLDRDTS 135
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV-WGIPKLNGMINAAIMRNPHNRIKMTVS 147
G++++AK+ S +HL QL+ +++R YLA+V + + L+G I+A + R +N++ V
Sbjct: 136 GVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPLERVGNNKVMWKVG 195
Query: 148 KNFN-AKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ N AK A T + T + + +LI+C L TGRTHQIRVH+Q++ H + D LYG
Sbjct: 196 NSSNKAKNAFTKF----TVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPVYNDPLYGL 251
Query: 207 KYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
K ++ + Q LHA ++ IHP N ++ + L S
Sbjct: 252 KSEQATEYG-QYLHAQQISFIHPTLNKEMGFEAQLDKTFS 290
>sp|P47451|Y209_MYCGE Uncharacterized RNA pseudouridine synthase MG209 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG209 PE=3 SV=1
Length = 308
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 131/231 (56%), Gaps = 12/231 (5%)
Query: 18 FLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA 77
F+ E +KL++++ED +++++NK +GL+ HP N +L + F N
Sbjct: 69 FITSVEPYNLKLEVLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACI----FHNNKNPV 124
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV-WGIPKLNGMINAAIMR 136
+VHRLD+++SG +VV K+ S ++L NQL+ ++R Y+A+V + L G INA + R
Sbjct: 125 YLVHRLDRDTSGAIVVCKNQASLLNLQNQLQNRTLKRYYVALVHFPFNALTGSINAPLAR 184
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLG 195
+N++ +++ AK A+T ++ +IN+ + +LI L TGRTHQIRVH++++
Sbjct: 185 VNNNKVMFKIAQTAKAKQAITKFK-----VINQNEKAALISLELLTGRTHQIRVHLKFIQ 239
Query: 196 HGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDIS 246
H + D LYG K K + Q LHA ++ IHP N + + L S
Sbjct: 240 HPVYNDPLYGIKSEKKDSYG-QFLHANRICFIHPTLNKPMDFHAPLEPKFS 289
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 24/227 (10%)
Query: 25 KVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
KV +L+ IIYED+ ++ILNK +G VH SG F + + +VHR
Sbjct: 88 KVAELEHMIIYEDDHMLILNKPSGTAVHGG----SGLKFGAIEALRALRPQARFLELVHR 143
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG-MINAAIMRNPHNR 141
+D+++SG+++VAK + HL Q + V++ Y A+V G K + ++NA +++N N
Sbjct: 144 IDRDTSGILLVAKKRSALRHLQAQFREKTVKKFYFALVMGQWKSSCKVVNAPLLKNEVNS 203
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
I V N N KP+ T ++ I+ K + +LI+ + TGRTHQIRVH Q+ GH I
Sbjct: 204 I---VRVNPNGKPSETRFK-----ILEKFEQATLIQASPITGRTHQIRVHTQYTGHPIAW 255
Query: 201 DNLYGKK----YSKSLIFNRQALHAYKLGLIHPKNNLKLKW-RINLP 242
D+ YG + Y+ L +R LHA + HP N+ +W IN P
Sbjct: 256 DDRYGDRRFDAYTGQLGLDRLFLHAANIKFQHPSND---EWMEINAP 299
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 30/239 (12%)
Query: 25 KVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGI 79
KV +L+ I+YED+ ++ILNK +G VH G G + + L + P FL +
Sbjct: 89 KVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALRALRPQARFL------EL 141
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNP 138
VHR+D+++SG+++VAK + HL Q + VQ+ Y A+V G ++NA +++N
Sbjct: 142 VHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNE 201
Query: 139 HNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
N I V N N KP+ T + E+ A +L++ + TGRTHQIRVH Q++G
Sbjct: 202 VNSI---VRVNPNGKPSETRFRILEKFAEA-------TLVQASPVTGRTHQIRVHTQYMG 251
Query: 196 HGIVGDNLYGKK----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
H I D+ YG + Y+ R LHA + +HP + KL+ L + + +T
Sbjct: 252 HPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALT 310
>sp|Q8DCG0|RLUA_VIBVU Ribosomal large subunit pseudouridine synthase A OS=Vibrio
vulnificus (strain CMCP6) GN=rluA PE=3 SV=1
Length = 250
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 13/207 (6%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPA-IGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+II+ED+ I+ +NK +GL+ P + +++ L E YP + +VHRLD ++S
Sbjct: 15 EIIFEDDHILAVNKPSGLLSVPGRLPEHHDSMWSRLQEQYPEI------QVVHRLDMSTS 68
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
GLMV AK+ ++ L Q + + + Y A VWG + +GMI+ ++ + NR V
Sbjct: 69 GLMVFAKNKRAEAALKKQFQYRLTHKVYYARVWGHVEADSGMIDLPLICDWPNRPMQKVC 128
Query: 148 KNFNAKPALTYYERLATGI-INKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ KP+ T ++ + N +++R TGR+HQ+RVHMQ LGH IVGD Y +
Sbjct: 129 HE-HGKPSQTAFQVAKREVHANGAQTTIMRLLPVTGRSHQLRVHMQALGHPIVGDEFYAQ 187
Query: 207 KYSKSLIFN-RQALHAYKLGLIHPKNN 232
+ F+ R LHA +L HPK++
Sbjct: 188 --GDAFTFSERLELHAAELSFYHPKSH 212
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 139/245 (56%), Gaps = 25/245 (10%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLE 66
+ + K + ++K KV L+ I++ED+ +IILNK +G+ VH G L+ + + L
Sbjct: 76 VRVAEKNDAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSG-LNFGVIEALRA 134
Query: 67 IYP---FLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
+ P FL +VHRLD+++SG++++AK + +L QL++ VQ+ YLA+V G
Sbjct: 135 LRPEARFL------ELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQ 188
Query: 124 PKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHI--SLIRCNLK 180
+ + +I A++++N + + V + KP+ T + I +++I +L++ +
Sbjct: 189 WQSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFS------IEERYINATLVKASPV 242
Query: 181 TGRTHQIRVHMQWLGHGIVGDNLYG-KKYSK---SLIFNRQALHAYKLGLIHPKNNLKLK 236
TGRTHQIRVH Q+ GH I D+ YG K + K L NR LHA+ + HPKN L+
Sbjct: 243 TGRTHQIRVHTQYAGHPIALDDKYGDKDFDKQMNELGLNRLFLHAFSIRFEHPKNGETLR 302
Query: 237 WRINL 241
+ +L
Sbjct: 303 FNASL 307
>sp|Q87LD3|RLUA_VIBPA Ribosomal large subunit pseudouridine synthase A OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluA PE=3 SV=1
Length = 250
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 19/210 (9%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPA-IGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
DI++ED+ I+ +NK +GL+ P + +++ L E YP + +VHRLD ++S
Sbjct: 15 DIVFEDDHILAVNKPSGLLSVPGRLAEHHDSMWSRLQEEYPDI------QVVHRLDMSTS 68
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
GLMV+AK+ ++ L Q + + + Y A VWG + + G I+ ++ + NR V
Sbjct: 69 GLMVLAKNKRAESALKKQFQFRLTHKIYYARVWGHVEQEEGEIDLPLICDWPNRPLQKVC 128
Query: 148 KNFNAKPALTYY-----ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
+ KP+ T + E G +++R TGR+HQ+RVHMQ LGH IVGD
Sbjct: 129 FE-DGKPSKTLFQVAKREEQEDGT----KTTIVRLLPITGRSHQLRVHMQALGHPIVGDE 183
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNN 232
Y + +K + R LHA +L HPK++
Sbjct: 184 FYATEEAK-VFSERLELHASELSFYHPKSH 212
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 24/228 (10%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGIVHRLDKNS 87
IIYED+ +++LNK +G VH G G + + L + P FL +VHR+D+++
Sbjct: 96 IIYEDDHLLVLNKPSGTAVHGGSGLKFGAI-EALRALRPEARFL------ELVHRIDRDT 148
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG-MINAAIMRNPHNRIKMTV 146
SG+++VAK + HL Q + VQ+ Y A+V G K + ++NA +++N N I V
Sbjct: 149 SGILLVAKKRSALRHLQAQFREKTVQKYYFALVMGEWKNSCKVVNAPLLKNEVNSI---V 205
Query: 147 SKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
N N KP+ T ++ +I K +L++ + TGRTHQIRVH Q+ GH I D+ YG
Sbjct: 206 RVNPNGKPSETRFK-----VIEKFPQATLVQASPITGRTHQIRVHTQYSGHPIAWDDRYG 260
Query: 206 KK----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ Y+ NR LHA + HP ++ + + + K++
Sbjct: 261 DRRFDAYTAQHGLNRLFLHAANIRFTHPATEQPMEINAPMGEQLEKVV 308
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 27/232 (11%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGIVHRLDKNS 87
I+YED+ I++LNK +G VH G LS + + L + P FL +VHRLD+++
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFL------ELVHRLDRDT 147
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTV 146
SG+++VAK + L QL+ +Q+ YLA+V G + + + A +++N + V
Sbjct: 148 SGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV 207
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ KP+ T + ER A +L+RC+ TGRTHQIRVH Q+ GH I D+
Sbjct: 208 RVSQEGKPSETRFKVEERYAFA-------TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDR 260
Query: 204 YG-KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG +++ + L NR LHA L HP ++ + D + + +
Sbjct: 261 YGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDDGLKRCL 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,662,330
Number of Sequences: 539616
Number of extensions: 3900523
Number of successful extensions: 8725
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 8297
Number of HSP's gapped (non-prelim): 191
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)