Query psy8191
Match_columns 257
No_of_seqs 254 out of 1480
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:56:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 7.6E-62 2.6E-66 437.4 24.4 243 3-253 59-312 (325)
2 1v9k_A Ribosomal large subunit 100.0 3.3E-59 1.1E-63 400.8 24.6 214 30-253 3-225 (228)
3 2i82_A Ribosomal large subunit 100.0 3.2E-59 1.1E-63 398.1 22.0 202 29-242 12-216 (217)
4 2oml_A Ribosomal large subunit 100.0 5.8E-45 2E-49 303.9 4.5 165 29-207 4-172 (189)
5 2olw_A Ribosomal large subunit 100.0 3.8E-43 1.3E-47 298.8 6.7 167 27-207 30-200 (217)
6 1ksk_A Ribosomal small subunit 100.0 1.1E-39 3.6E-44 280.6 6.7 152 30-207 56-209 (234)
7 1vio_A Ribosomal small subunit 100.0 1.7E-38 5.9E-43 274.5 6.5 153 29-207 54-210 (243)
8 2gml_A Ribosomal large subunit 100.0 1.2E-31 4E-36 229.5 10.2 142 35-205 13-154 (237)
9 3dh3_A Ribosomal large subunit 100.0 7.3E-32 2.5E-36 237.9 8.7 146 33-207 64-209 (290)
10 1k8w_A TRNA pseudouridine synt 97.4 0.00021 7.2E-09 63.2 5.6 72 36-123 25-97 (327)
11 2aus_C Pseudouridine synthase; 97.2 0.00025 8.6E-09 63.2 4.2 73 33-121 43-115 (334)
12 1r3e_A TRNA pseudouridine synt 97.2 0.00026 8.9E-09 62.2 4.2 72 36-123 3-75 (309)
13 1sgv_A TRNA pseudouridine synt 97.1 0.00036 1.2E-08 61.4 4.1 73 35-123 5-78 (316)
14 2apo_A Probable tRNA pseudouri 97.0 0.00035 1.2E-08 62.7 3.7 73 33-121 63-135 (357)
15 3u28_A H/ACA ribonucleoprotein 96.8 0.0012 4.2E-08 59.8 5.0 75 33-123 56-131 (400)
16 2k6p_A Uncharacterized protein 58.9 3.7 0.00013 28.6 1.5 36 3-38 42-83 (92)
17 2ckc_A Chromodomain-helicase-D 33.1 26 0.00089 23.8 2.3 33 35-67 24-56 (80)
18 2rod_B NOXA, noxaa; MCL-1, apo 28.2 20 0.00069 18.6 0.8 15 239-253 1-15 (27)
19 2dl6_A Chromodomain-helicase-D 25.1 31 0.0011 23.8 1.6 34 34-67 16-49 (83)
20 4egu_A Histidine triad (HIT) p 24.4 36 0.0012 24.4 2.0 17 26-42 15-31 (119)
21 3oj7_A Putative histidine tria 24.4 36 0.0012 24.4 2.0 17 26-42 18-34 (117)
22 2jz2_A SSL0352 protein; SH3-li 24.3 44 0.0015 21.8 2.1 38 1-38 1-41 (66)
23 3n1s_A HIT-like protein HINT; 24.1 36 0.0012 24.6 2.0 18 25-42 13-30 (119)
24 3o1c_A Histidine triad nucleot 21.5 60 0.0021 23.6 2.8 17 26-42 26-42 (126)
25 1b4b_A Arginine repressor; cor 20.2 98 0.0033 20.3 3.3 20 90-109 50-69 (71)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=7.6e-62 Score=437.41 Aligned_cols=243 Identities=42% Similarity=0.680 Sum_probs=202.0
Q ss_pred ccCCEEEEEcCCCccccCcCcCCCCCccEEEecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCC
Q psy8191 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82 (257)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ilyed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhR 82 (257)
-.||+|.+..+... ...+.++.++++|+|||++++|||||+|++||++.+....|+.+.+..+++......++++|||
T Consensus 59 ~~gD~I~v~~~~~~--~~~~~~~~~~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhR 136 (325)
T 1v9f_A 59 LGGEQVAINAEIEE--EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 136 (325)
T ss_dssp -------------------CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCC
T ss_pred CCCCEEEEeccccc--cccCCcccCCCeEEEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeecC
Confidence 35777777655432 1234456677899999999999999999999998877677899999877754433457899999
Q ss_pred CCCCCceEEEEecCHHHHHHHHHHHHcCeEEEEEEEEEeccCCCCcEEEeceeeCCCCCeeEEEecCCCCcceeeeeEee
Q psy8191 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERL 162 (257)
Q Consensus 83 LD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~Y~alv~G~~~~~g~i~~~l~~~~~~~~~~~v~~~~~~k~a~t~~~vl 162 (257)
||++||||||||||.++++.|+++|+++.++|+|+|+|.|.++++|+|+.||.++...+.++.+. .+|+.|.|.|+++
T Consensus 137 LD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~g~i~~~i~~~~~~~~~~~v~--~~gk~a~t~~~vl 214 (325)
T 1v9f_A 137 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRIM 214 (325)
T ss_dssp CCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCCCEEEECCEEECSSCTTCEEEC--TTSBCCEEEEEEE
T ss_pred CCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCCCCEEeeeeeECCCCCEEEEEC--CCCeeEEEEEEEe
Confidence 99999999999999999999999999999999999999999987899999999987777777776 6899999999999
Q ss_pred eeccccCCcEEEEEEEeccCCcchHHHHHHHcCCceecCCCCCCCc--cc---------cccccccccccceeEEecCCC
Q psy8191 163 ATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY--SK---------SLIFNRQALHAYKLGLIHPKN 231 (257)
Q Consensus 163 ~~~~~~~~~~slv~~~~~TGRtHQIR~hla~lG~PIvGD~~Yg~~~--~~---------~~~~~r~~LHa~~l~f~~p~~ 231 (257)
+.. .++|+++|+|.||||||||+||+++||||+||.+||+.. .. .....|++|||++|+|.||.+
T Consensus 215 ~~~----~~~slv~~~l~TGR~HQIRvhla~lG~PI~GD~~Yg~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~~ 290 (325)
T 1v9f_A 215 EHF----RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 290 (325)
T ss_dssp EEC----SSEEEEEEEESCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTT
T ss_pred EEc----CCeEEEEEEECCCCcHHHHHHHHhCCCceeCChhhCCccccccccchhhhhhccCCcChhhheeeeEeeCCCC
Confidence 987 789999999999999999999999999999999999751 00 013578999999999999999
Q ss_pred CceEEEEEcCCHHHHHHHHHcC
Q psy8191 232 NLKLKWRINLPDDISKLITFSG 253 (257)
Q Consensus 232 ~~~~~~~ap~P~~~~~~l~~l~ 253 (257)
++.+.|+||+|++|..+++.|+
T Consensus 291 ~~~~~~~aplp~~~~~~l~~l~ 312 (325)
T 1v9f_A 291 GIEMEWHAPIPQDMVELIEVMR 312 (325)
T ss_dssp CCEEEEECCCCHHHHHHHHHHH
T ss_pred CCEEEEEecCcHHHHHHHHHhc
Confidence 9999999999999999998875
No 2
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=3.3e-59 Score=400.80 Aligned_cols=214 Identities=33% Similarity=0.470 Sum_probs=185.3
Q ss_pred cEEEecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHc
Q psy8191 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKM 109 (257)
Q Consensus 30 ~ilyed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~ 109 (257)
+|+|||++++|||||+|++||++.+ ...++.+.+...+.. ..++++|||||++||||||||||.++++.|+++|++
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~~---~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~ 78 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 78 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHSTT---CSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcCC---CCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHh
Confidence 6999999999999999999998765 345677777654431 235788999999999999999999999999999999
Q ss_pred CeEEEEEEEEEeccCCC-CcEEEeceeeCCCC--CeeEEEecCCCCcceeeeeEeeeeccccCCcEEEEEEEeccCCcch
Q psy8191 110 HIVQRKYLAMVWGIPKL-NGMINAAIMRNPHN--RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186 (257)
Q Consensus 110 ~~v~K~Y~alv~G~~~~-~g~i~~~l~~~~~~--~~~~~v~~~~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TGRtHQ 186 (257)
+.++|+|+|+|.|.+++ +|+|+.||.++... ...+.+. ++|+.|.|.|++++.. .++|+++|+|.||||||
T Consensus 79 ~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~~--~~gk~a~t~~~vl~~~----~~~slv~~~l~TGR~HQ 152 (228)
T 1v9k_A 79 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS--QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQ 152 (228)
T ss_dssp TCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEEC--TTSBCCCEEEEEEEEC----SSEEEEEEEESSCCTTH
T ss_pred CCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEEC--CCCcEEEEEEEEEEEc----CCeEEEEEEECCCCchH
Confidence 99999999999999975 79999999876432 3344454 6799999999999987 67999999999999999
Q ss_pred HHHHHHHcCCceecCCCCCCCccc------cccccccccccceeEEecCCCCceEEEEEcCCHHHHHHHHHcC
Q psy8191 187 IRVHMQWLGHGIVGDNLYGKKYSK------SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSG 253 (257)
Q Consensus 187 IR~hla~lG~PIvGD~~Yg~~~~~------~~~~~r~~LHa~~l~f~~p~~~~~~~~~ap~P~~~~~~l~~l~ 253 (257)
||+||+++||||+||.+||+...+ .....|++|||++|+|.||.+++.+.|+||+|++|+.+++.|+
T Consensus 153 IR~hla~lG~PI~gD~~YG~~~~~~~~~~~~~~~~r~~LHa~~l~f~hP~t~~~~~~~aplp~~~~~~l~~l~ 225 (228)
T 1v9k_A 153 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKMR 225 (228)
T ss_dssp HHHHHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEecCcccCCccccchhhcccCCCCChhhccceeEeeCCCCCCEEEEEeCCcHHHHHHHHHhh
Confidence 999999999999999999973110 1145799999999999999999999999999999999998875
No 3
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=3.2e-59 Score=398.08 Aligned_cols=202 Identities=32% Similarity=0.512 Sum_probs=177.3
Q ss_pred ccEEEecCcEEEEECCCCceeeeCCC-CCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHH
Q psy8191 29 LDIIYEDNEIIILNKSAGLVVHPAIG-NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (257)
Q Consensus 29 ~~ilyed~~~ivvnKP~Gl~~~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f 107 (257)
++|+|||++++|||||+|++||++.+ ....++.+.+..+++ ++.+|||||++||||||||||.++++.|+++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~~------~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f 85 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHRLDMATSGVIVVALTKAAERELKRQF 85 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT------TCEESSCCCTTCEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHCC------CCceeecCCCCCeEEEEEEeCHHHHHHHHHHH
Confidence 89999999999999999999998764 345688888876642 46789999999999999999999999999999
Q ss_pred HcCeEEEEEEEEEeccCCC-CcEEEeceeeCCCCCeeEEEecCCCCcceeeeeEeeeeccccCCc-EEEEEEEeccCCcc
Q psy8191 108 KMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKH-ISLIRCNLKTGRTH 185 (257)
Q Consensus 108 ~~~~v~K~Y~alv~G~~~~-~g~i~~~l~~~~~~~~~~~v~~~~~~k~a~t~~~vl~~~~~~~~~-~slv~~~~~TGRtH 185 (257)
+++.++|+|+|+|.|.+++ +|+|+.||.++..++.++.+.. .+|+.|.|.|++++.. .+ +|+++|+|.|||||
T Consensus 86 ~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~v~~-~~gk~a~t~~~vl~~~----~~~~slv~~~l~TGR~H 160 (217)
T 2i82_A 86 REREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-ETGKPAQTEYEVVEYA----ADNTARVVLKPITGRSH 160 (217)
T ss_dssp HTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECT-TTCBCCEEEEEEEEEE----TTTEEEEEEEESSCCTT
T ss_pred HhCCeeEEEEEEEecccCCCCcEEecceeecCCCCcEEEEeC-CCCcEEEEEEEEEEEC----CCCeEEEEEEECCCCcH
Confidence 9999999999999999975 7899999987655444454432 6789999999999987 44 89999999999999
Q ss_pred hHHHHHHHcCCceecCCCCCCCccccccccccccccceeEEecCCCCceEEEEEcCC
Q psy8191 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242 (257)
Q Consensus 186 QIR~hla~lG~PIvGD~~Yg~~~~~~~~~~r~~LHa~~l~f~~p~~~~~~~~~ap~P 242 (257)
|||+||+++||||+||.+||+...+. ...|++|||++|+|.||.+++.+.|+||+|
T Consensus 161 QIR~hla~lG~PIvGD~~Yg~~~~~~-~~~r~~LHa~~l~f~hP~~~~~~~~~ap~p 216 (217)
T 2i82_A 161 QLRVHMLALGHPILGDRFYASPEARA-MAPRLLLHAEMLTITHPAYGNSMTFKAPAD 216 (217)
T ss_dssp HHHHHHHHTTCCBTTCTTTSCHHHHH-TCSSCCEEEEEEEEECTTTCCEEEEECCCC
T ss_pred HHHHHHHHCCCcEECccccCCccccC-CCCCceeeeeEeEEcCCCCCCEEEEEecCC
Confidence 99999999999999999999753211 247999999999999999999999999988
No 4
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=5.8e-45 Score=303.90 Aligned_cols=165 Identities=18% Similarity=0.109 Sum_probs=127.7
Q ss_pred ccEEEecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHH
Q psy8191 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLK 108 (257)
Q Consensus 29 ~~ilyed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~ 108 (257)
..|||||++++|||||+|++||++.+....++.+.+. ..++++|||||++|||+||||||.++++.|+++
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~--------~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~-- 73 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP-- 73 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC--------CSSCEESSCCCTTCEEEEEEESCHHHHHHHHST--
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC--------CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCc--
Confidence 4799999999999999999999988766677765443 135789999999999999999999999999997
Q ss_pred cCeEEEEEEEEEeccCCC-C-cEEEeceeeCCCC--CeeEEEecCCCCcceeeeeEeeeeccccCCcEEEEEEEeccCCc
Q psy8191 109 MHIVQRKYLAMVWGIPKL-N-GMINAAIMRNPHN--RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRT 184 (257)
Q Consensus 109 ~~~v~K~Y~alv~G~~~~-~-g~i~~~l~~~~~~--~~~~~v~~~~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TGRt 184 (257)
++.++|+|+|+|.|.+++ + +.++.++...... ........ .....+.|.|+++.... .++|+++|+|.||||
T Consensus 74 ~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~t~~~v~~~~~---~~~slv~~~l~TGR~ 149 (189)
T 2oml_A 74 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-EPAWLWPRNPPIRERKS---IPTSWLKITLYEGRN 149 (189)
T ss_dssp TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-CCTTCCCCSSCCC-CTT---SCEEEEEEEESCCCT
T ss_pred cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEec-ccccccccccccccccC---CCcEEEEEEEeeCCC
Confidence 678999999999999875 2 3566666432111 11122221 22224578999988752 479999999999999
Q ss_pred chHHHHHHHcCCceecCCCCCCC
Q psy8191 185 HQIRVHMQWLGHGIVGDNLYGKK 207 (257)
Q Consensus 185 HQIR~hla~lG~PIvGD~~Yg~~ 207 (257)
||||+||+++||||+||.+||.+
T Consensus 150 HQIRvhla~lG~PI~gD~~Y~~g 172 (189)
T 2oml_A 150 RQVRRMTAHVGFPTLRLIRYAMG 172 (189)
T ss_dssp THHHHHHHHTTCCEEEEEEEEET
T ss_pred HHHHHHHHHcCCcCcceEEEEEC
Confidence 99999999999999999999865
No 5
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=100.00 E-value=3.8e-43 Score=298.77 Aligned_cols=167 Identities=17% Similarity=0.129 Sum_probs=120.4
Q ss_pred CCccEEEecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHH
Q psy8191 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (257)
Q Consensus 27 ~~~~ilyed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~ 106 (257)
..++|||||++++|||||+|++||++.+....++.+.|. ..++++|||||++||||||||||.++++.|+++
T Consensus 30 ~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~--------~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~~ 101 (217)
T 2olw_A 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 (217)
T ss_dssp -------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC--------CCSCEESSCCCTTCEEEEEEESCHHHHHHHHCT
T ss_pred ccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC--------cCCceECCCCCCCCeeEEEEEcCHHHHHHHHcc
Confidence 357899999999999999999999987766677765442 135789999999999999999999999999987
Q ss_pred HHcCeEEEEEEEEEeccCCC-C-cEEEeceeeCC-C-CCeeEEEecCCCCcceeeeeEeeeeccccCCcEEEEEEEeccC
Q psy8191 107 LKMHIVQRKYLAMVWGIPKL-N-GMINAAIMRNP-H-NRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182 (257)
Q Consensus 107 f~~~~v~K~Y~alv~G~~~~-~-g~i~~~l~~~~-~-~~~~~~v~~~~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TG 182 (257)
.+.++|+|+|+|.|.+++ . +.++.++.... . ......+. ...+.+.+.+.++.... ..++|+++|+|.||
T Consensus 102 --~~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~--~~~~~~~~~~~~v~~~~--~~~~slv~~~l~TG 175 (217)
T 2olw_A 102 --GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV--DEPAWLWPRNPPIRERK--SIPTSWLKITLYEG 175 (217)
T ss_dssp --TCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEE--CCCTTCCCCSSCCC-CC--SSCEEEEEEEESCC
T ss_pred --cccCCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEe--cCCccccccccceeccC--CCCcEEEEEEECcC
Confidence 578999999999999875 3 45665654211 0 01112222 11111233333332220 14789999999999
Q ss_pred CcchHHHHHHHcCCceecCCCCCCC
Q psy8191 183 RTHQIRVHMQWLGHGIVGDNLYGKK 207 (257)
Q Consensus 183 RtHQIR~hla~lG~PIvGD~~Yg~~ 207 (257)
||||||+||+++||||+||.+||.+
T Consensus 176 RtHQIRvhla~lG~PIvgD~rY~~g 200 (217)
T 2olw_A 176 RNRQVRRMTAHVGFPTLRLIRYAMG 200 (217)
T ss_dssp CTTHHHHHHHHTTCCEEEEEEEEET
T ss_pred CCHHHHHHHHHCCCcEeCCEEEEEC
Confidence 9999999999999999999999865
No 6
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=1.1e-39 Score=280.58 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=118.6
Q ss_pred cEEEe-cCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHH
Q psy8191 30 DIIYE-DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLK 108 (257)
Q Consensus 30 ~ilye-d~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~ 108 (257)
+|+|| |++++|||||+|++||++.+. ..|+.+.+..++. .++++|||||++|||+||||||.++++.+.. +
T Consensus 56 ~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~-----~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~--~ 127 (234)
T 1ksk_A 56 PLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA-----WKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--P 127 (234)
T ss_dssp EECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCTTG-----GGCEESSCCCTTCEEEEEEESCHHHHHHHHC--T
T ss_pred EeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhhhc-----CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhC--C
Confidence 58999 999999999999999998764 6677776544321 3578999999999999999999998888866 5
Q ss_pred cCeEEEEEEEEEeccCCCCcEEEeceeeCCCCCeeEEEecC-CCCcceeeeeEeeeeccccCCcEEEEEEEeccCCcchH
Q psy8191 109 MHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKN-FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQI 187 (257)
Q Consensus 109 ~~~v~K~Y~alv~G~~~~~g~i~~~l~~~~~~~~~~~v~~~-~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TGRtHQI 187 (257)
++.++|+|+|+|.|.++++ .++.+... +.+... ..+++|. |++++ .|+++|+|.|||||||
T Consensus 128 ~~~v~K~Y~a~v~g~~~~~-~i~~~~~g-------~~~~~~~~~~~~a~--~~~~~--------~s~~~~~l~tGR~HQI 189 (234)
T 1ksk_A 128 RHHCEKTYLVTLESPVADD-TAEQFAKG-------VQLHNEKDLTKPAV--LEVIT--------PTQVRLTISEGRYHQV 189 (234)
T ss_dssp TSCCCEEEEEEESSCCCTT-HHHHHHHC-------CCCTTCSSCCCCCE--EEEEE--------TTEEEEEESCCCTTHH
T ss_pred CCCCCeEEEEEEccCCCHH-HHHHHHCC-------eEECCCCcccceEE--EEEeC--------CeEEEEEEccCCCHHH
Confidence 7899999999999998764 23332110 011100 1245554 66664 3699999999999999
Q ss_pred HHHHHHcCCceecCCCCCCC
Q psy8191 188 RVHMQWLGHGIVGDNLYGKK 207 (257)
Q Consensus 188 R~hla~lG~PIvGD~~Yg~~ 207 (257)
|+||+++||||+||.+|+.+
T Consensus 190 R~h~~~lG~pi~gd~ry~~g 209 (234)
T 1ksk_A 190 KRMFAAVGNHVVELHRERIG 209 (234)
T ss_dssp HHHHHHTTCCEEEEEEEEET
T ss_pred HHHHHHcCCeEeeeEEEEEC
Confidence 99999999999999999754
No 7
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=1.7e-38 Score=274.51 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=116.6
Q ss_pred ccEEEecCc-EEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHH
Q psy8191 29 LDIIYEDNE-IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (257)
Q Consensus 29 ~~ilyed~~-~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f 107 (257)
.+|+|||++ ++|+|||+|++||++.+. ..|+.+.|..++. .++++|||||++||||||||+|.+++..+..
T Consensus 54 ~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~-----~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~-- 125 (243)
T 1vio_A 54 ELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPLA-----GKLHSAGRLDVDTTGLVLLTDDGQWSHRITS-- 125 (243)
T ss_dssp EECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTGG-----GGCEESSCCCTTCEEEEEEESCHHHHHHHHC--
T ss_pred cccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHHhc-----CCEeEccCCCCCCeEEEEEEECHHHHHHHhC--
Confidence 468999999 999999999999988764 5677776644321 2578999999999999999999998777765
Q ss_pred HcCeEEEEEEEEEeccCCCCcEEEeceeeCCCCCeeEEEecC-CCCcceeeeeEeeeeccccCCcEEEEEEEeccCCcch
Q psy8191 108 KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKN-FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186 (257)
Q Consensus 108 ~~~~v~K~Y~alv~G~~~~~g~i~~~l~~~~~~~~~~~v~~~-~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TGRtHQ 186 (257)
+++.++|+|+|+|.|.++++ .++.+... +.+... ..+++|. |++++ .|+++|+|.||||||
T Consensus 126 ~~~~v~K~Y~a~v~g~~~~~-~i~~~~~g-------~~~~~~~~~~~~a~--~~~l~--------~sl~~~~l~tGR~HQ 187 (243)
T 1vio_A 126 PKHHCEKTYLVTLADPVEEN-YSAACAEG-------ILLRGEKEPTKPAK--LEILD--------DYNVNLTISEGRYHQ 187 (243)
T ss_dssp TTSCCCEEEEEEESSCCCTT-HHHHHHHC-------CCCTTCSSCCCCCE--EEECS--------SSEEEEEESCCCTTH
T ss_pred CCCCCCEEEEEEEeCCCCHH-HHHHHhCC-------eEECCCCccceeEE--EEEeC--------CEEEEEEEccCCcHH
Confidence 57899999999999998764 23333210 011100 2356665 45553 479999999999999
Q ss_pred HHHHHHHcCCceecCCC--CCCC
Q psy8191 187 IRVHMQWLGHGIVGDNL--YGKK 207 (257)
Q Consensus 187 IR~hla~lG~PIvGD~~--Yg~~ 207 (257)
||+||+++||||+||.. ||+-
T Consensus 188 IR~hl~~lG~pI~gd~r~~~G~~ 210 (243)
T 1vio_A 188 VKRMFAALGNKVVGLHRWKIGDV 210 (243)
T ss_dssp HHHHHHHTTCCEEEEEEEEETTE
T ss_pred HHHHHHHCCCeEcccEEEEECCE
Confidence 99999999999999994 5543
No 8
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.97 E-value=1.2e-31 Score=229.48 Aligned_cols=142 Identities=20% Similarity=0.188 Sum_probs=109.6
Q ss_pred cCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeEEE
Q psy8191 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114 (257)
Q Consensus 35 d~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K 114 (257)
+++|+|+|||+|++|++... ...++.+.+.. ..++++|||||++||||||||+|.+++..|... ++.++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~-------~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p--~~~v~K 82 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA--GNDHEK 82 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC-------SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHH--HHHSCE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc-------cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCc--cCCCCE
Confidence 46899999999999998665 45677765531 236889999999999999999999999999884 667999
Q ss_pred EEEEEEeccCCCCcEEEeceeeCCCCCeeEEEecCCCCcceeeeeEeeeeccccCCcEEEEEEEeccCCcchHHHHHHHc
Q psy8191 115 KYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194 (257)
Q Consensus 115 ~Y~alv~G~~~~~g~i~~~l~~~~~~~~~~~v~~~~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TGRtHQIR~hla~l 194 (257)
+|+|+|.|.++++. ++. +. . .+.+ .+++.+.+.++++. .++++|.|.|||+||||+||+++
T Consensus 83 ~Y~a~V~G~~~~~~-i~~-l~---~---Gv~l---~~~~~~~a~~~~l~--------~s~l~i~L~tGR~HQIRr~~a~l 143 (237)
T 2gml_A 83 EYLVTVDKPITEEF-IRG-MS---A---GVPI---LGTVTKKCKVKKEA--------PFVFRITLVQGLNRQIRRMCEHF 143 (237)
T ss_dssp EEEEEESSCCCHHH-HHH-HS---S---CCEE---TTEECCCCEEEEEE--------TTEEEEEECCCSTTHHHHHHHHT
T ss_pred EEEEEEcccCCHHH-HHH-HH---c---CeEe---CCcccccEEEEEeC--------CEEEEEEEecCCcHHHHHHHHHc
Confidence 99999999987532 111 10 0 1111 23444455666653 25899999999999999999999
Q ss_pred CCceecCCCCC
Q psy8191 195 GHGIVGDNLYG 205 (257)
Q Consensus 195 G~PIvGD~~Yg 205 (257)
||||+||..+.
T Consensus 144 G~pV~~L~R~~ 154 (237)
T 2gml_A 144 GYEVKKLERTR 154 (237)
T ss_dssp TCCEEEEEEEE
T ss_pred CCCEeeeEEEE
Confidence 99999997753
No 9
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.97 E-value=7.3e-32 Score=237.94 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=110.2
Q ss_pred EecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeE
Q psy8191 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (257)
Q Consensus 33 yed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v 112 (257)
|||++|+|+|||+|++||+..+. ..++.+.+.. ..++++|||||++||||||||+|.+++..|.+. .+.+
T Consensus 64 ~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~-------~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~--~~~v 133 (290)
T 3dh3_A 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA--GNDH 133 (290)
T ss_dssp GGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC-------SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCG--GGCC
T ss_pred cccceEEEEECCCccccCCCCCC-CCcHHHHhhc-------cCceeeeccCCCCCcceEEEcCCHHHHHHHHHh--hCCc
Confidence 69999999999999999987754 5678777643 246889999999999999999999999999874 6779
Q ss_pred EEEEEEEEeccCCCCcEEEeceeeCCCCCeeEEEecCCCCcceeeeeEeeeeccccCCcEEEEEEEeccCCcchHHHHHH
Q psy8191 113 QRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQ 192 (257)
Q Consensus 113 ~K~Y~alv~G~~~~~g~i~~~l~~~~~~~~~~~v~~~~~~k~a~t~~~vl~~~~~~~~~~slv~~~~~TGRtHQIR~hla 192 (257)
+|+|+|+|.|.++++. +. .+. .+ ..+ .++....+.++. .+.++++|.|.|||+||||+||+
T Consensus 134 ~K~Y~a~V~G~~~~~~-i~-~l~---~G---v~l---~~~~~~~~~v~~--------~~~~~l~l~l~tGR~HQIR~~~~ 194 (290)
T 3dh3_A 134 EKEYLVTVDKPITEEF-IR-GMS---AG---VPI---LGTVTKKCKVKK--------EAPFVFRITLVQGLNRQIRRMCE 194 (290)
T ss_dssp CEEEEEEESSCCCHHH-HH-HHH---TC---CBC---SSSBCCCCEEEE--------CSSSEEEEEESCCCTTHHHHHHH
T ss_pred CEEEEEEECCCCCHHH-HH-HHh---cC---ccc---CCcccceEEEEE--------cCCeEEEEEEeCCCChHHHHHHH
Confidence 9999999999987521 11 010 00 000 112111222222 23468999999999999999999
Q ss_pred HcCCceecCCCCCCC
Q psy8191 193 WLGHGIVGDNLYGKK 207 (257)
Q Consensus 193 ~lG~PIvGD~~Yg~~ 207 (257)
++||||+++..|.-+
T Consensus 195 ~lG~pV~~L~R~~iG 209 (290)
T 3dh3_A 195 HFGYEVKKLERTRIM 209 (290)
T ss_dssp HTTCCEEEEEEEEET
T ss_pred HcCCeEEEeEEEEEC
Confidence 999999999877543
No 10
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.35 E-value=0.00021 Score=63.21 Aligned_cols=72 Identities=21% Similarity=0.390 Sum_probs=54.8
Q ss_pred CcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeEEEE
Q psy8191 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (257)
Q Consensus 36 ~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~ 115 (257)
+.+++||||+|+.++ .+++.++..+. ..+.+-.+.||-..||+|+++-.+.+ + +.+.+.. -.|+
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~----~kKvGH~GTLDP~AtGvL~i~~G~aT-K-l~~~l~~--~~K~ 88 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN----ANRAGHTGALDPLATGMLPICLGEAT-K-FSQYLLD--SDKR 88 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG-G-GTHHHHT--SCEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc----cceeccCCCCCCCCeeEEEEEECHHH-h-HHHHhcc--CCcE
Confidence 579999999999774 46677766553 34677899999999999999987754 2 4555554 3799
Q ss_pred EEEEEe-cc
Q psy8191 116 YLAMVW-GI 123 (257)
Q Consensus 116 Y~alv~-G~ 123 (257)
|.|.+. |.
T Consensus 89 Y~a~~~lG~ 97 (327)
T 1k8w_A 89 YRVIARLGQ 97 (327)
T ss_dssp EEEEEEETE
T ss_pred EEEEEEECC
Confidence 999876 54
No 11
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=97.18 E-value=0.00025 Score=63.18 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=55.4
Q ss_pred EecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeE
Q psy8191 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (257)
Q Consensus 33 yed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v 112 (257)
|-.+.+++||||+|+.+| .+++.+...+. ..+.+-.+.||-..||||+++-.+.+ ++.+.+.+ .
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~----~~KvGH~GTLDP~atGvL~v~~g~aT--k~~~~l~~--~ 106 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILN----LEKAGHGGTLDPKVSGVLPVALERAT--RVVQALLP--A 106 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTT--C
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----cceeccccccCCccceeEEEEeChhh--hhHHHhcc--c
Confidence 445789999999999765 46677766553 34677899999999999999987543 44444443 5
Q ss_pred EEEEEEEEe
Q psy8191 113 QRKYLAMVW 121 (257)
Q Consensus 113 ~K~Y~alv~ 121 (257)
.|+|.|.+.
T Consensus 107 ~K~Y~~~~~ 115 (334)
T 2aus_C 107 GKEYVALMH 115 (334)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 799999876
No 12
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=97.17 E-value=0.00026 Score=62.17 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=54.5
Q ss_pred CcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeEEEE
Q psy8191 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (257)
Q Consensus 36 ~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~ 115 (257)
+.+++||||+|+.+| .+++.++..+. ..+.+-.+.||-..||||+++-.+.+ ++.+.+.. ..|+
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~----~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~~--~~K~ 66 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK----TRKVGHGGTLDPFACGVLIIGVNQGT--RILEFYKD--LKKV 66 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTT--SCEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc----cceecccccCCCCcceeEEEEECHHH--hHHHHhCc--cCcE
Confidence 479999999999775 46777776653 34677899999999999999987643 34444443 4899
Q ss_pred EEEEEe-cc
Q psy8191 116 YLAMVW-GI 123 (257)
Q Consensus 116 Y~alv~-G~ 123 (257)
|.|.+. |.
T Consensus 67 Y~a~~~lG~ 75 (309)
T 1r3e_A 67 YWVKMRLGL 75 (309)
T ss_dssp EEEEEEETE
T ss_pred EEEEEEECC
Confidence 999876 53
No 13
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=97.07 E-value=0.00036 Score=61.39 Aligned_cols=73 Identities=22% Similarity=0.446 Sum_probs=55.2
Q ss_pred cCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeEEE
Q psy8191 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114 (257)
Q Consensus 35 d~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K 114 (257)
.+.+++||||+|+.+| .+++.++..+. ..+.+-.+.||-..||||+++-.+.+ ++.+.+.. ..|
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~----~kKvGH~GTLDP~AtGvL~i~iG~aT--Kl~~~l~~--~~K 68 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA----TRRVGHAGTLDPMATGVLVIGIERAT--KILGLLTA--APK 68 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTT--SCE
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc----cccccccccCCCCCeEEEEEEECHHH--hHHHHhCc--CCc
Confidence 4689999999999775 46777776653 34677899999999999999987643 34444433 489
Q ss_pred EEEEEEe-cc
Q psy8191 115 KYLAMVW-GI 123 (257)
Q Consensus 115 ~Y~alv~-G~ 123 (257)
+|.|.+. |.
T Consensus 69 ~Y~~~~~lG~ 78 (316)
T 1sgv_A 69 SYAATIRLGQ 78 (316)
T ss_dssp EEEEEEEETE
T ss_pred EEEEEEEECC
Confidence 9999876 53
No 14
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=97.03 E-value=0.00035 Score=62.68 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=55.6
Q ss_pred EecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeE
Q psy8191 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (257)
Q Consensus 33 yed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v 112 (257)
|-.+.+++||||+|+.++ .+++.++..+. ..+.+-..-||-..||||+++-.+.+ ++.+.+.. .
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~----~~KvGH~GTLDP~AtGvL~v~~G~aT--k~~~~l~~--~ 126 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILN----LDKAGHGGTLDPKVTGVLPVALERAT--KTIPMWHI--P 126 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTS--S
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----ccccccccccCCCceeEEEEEeCHHH--hHHHHhcc--C
Confidence 456789999999999775 46777776653 34677899999999999999987542 44444443 6
Q ss_pred EEEEEEEEe
Q psy8191 113 QRKYLAMVW 121 (257)
Q Consensus 113 ~K~Y~alv~ 121 (257)
.|+|.|.+.
T Consensus 127 ~K~Y~~~~~ 135 (357)
T 2apo_A 127 PKEYVCLMH 135 (357)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 799999876
No 15
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.78 E-value=0.0012 Score=59.81 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=55.6
Q ss_pred EecCcEEEEECCCCceeeeCCCCCcccHHHHHHhhcCcCCCCCcccccCCCCCCCceEEEEecCHHHHHHHHHHHHcCeE
Q psy8191 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (257)
Q Consensus 33 yed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v 112 (257)
|-.+.+|+||||+|+.+| .+++.++..+. ..+.+-.+.||-..||||+++-.+. . ++.+.+.. -
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~----~kKvGH~GTLDP~AtGvL~v~iG~a-T-Kl~~~l~~--~ 119 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILR----CEKTGHSGTLDPKVTGCLIVCIDRA-T-RLVKSQQG--A 119 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHT----CSCEEESSCCCTTCEEEEEEEEGGG-G-GGHHHHHH--S
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----cCcccccCCCCCCCeEEEEEEEChH-H-hHhHHhcC--C
Confidence 555799999999999775 46677766553 3467789999999999999998753 2 33344443 4
Q ss_pred EEEEEEEEe-cc
Q psy8191 113 QRKYLAMVW-GI 123 (257)
Q Consensus 113 ~K~Y~alv~-G~ 123 (257)
.|+|.|.+. |.
T Consensus 120 ~K~Y~a~~~lG~ 131 (400)
T 3u28_A 120 GKEYVCIVRLHD 131 (400)
T ss_dssp CEEEEEEEEESS
T ss_pred CcEEEEEEEeCC
Confidence 799999875 43
No 16
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=58.94 E-value=3.7 Score=28.62 Aligned_cols=36 Identities=6% Similarity=-0.157 Sum_probs=19.1
Q ss_pred ccCCEEEEEcCCCccccCcCc------CCCCCccEEEecCcE
Q psy8191 3 ISGYELIIIKPKKNFFLNKTE------KKVIKLDIIYEDNEI 38 (257)
Q Consensus 3 ~~g~~~~~~~~~~~~~~~~~~------~~~~~~~ilyed~~~ 38 (257)
-.||+|.+..|.+........ +....+.++|||+++
T Consensus 42 ~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lyed~~~ 83 (92)
T 2k6p_A 42 KAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAPKTK 83 (92)
T ss_dssp CTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEEECCC
T ss_pred CCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHHhcCC
Confidence 357777777665442211111 122336788888764
No 17
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=33.08 E-value=26 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=25.0
Q ss_pred cCcEEEEECCCCceeeeCCCCCcccHHHHHHhh
Q psy8191 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67 (257)
Q Consensus 35 d~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~ 67 (257)
|.-+=|+|+|-|....+.......+|.++|.++
T Consensus 24 e~pVPViN~~dGtrL~Ge~AP~~KdL~dWLrqh 56 (80)
T 2ckc_A 24 DTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLH 56 (80)
T ss_dssp TCBCCEEETTTTEEECTTSSCBHHHHHHHHHHC
T ss_pred CCccceeecCCCcccccccCccccCHHHHHHHC
Confidence 445678999999988766555666788888765
No 18
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=28.23 E-value=20 Score=18.58 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.1
Q ss_pred EcCCHHHHHHHHHcC
Q psy8191 239 INLPDDISKLITFSG 253 (257)
Q Consensus 239 ap~P~~~~~~l~~l~ 253 (257)
|.+|++|..-|.++|
T Consensus 1 aelppefaaqlrkig 15 (27)
T 2rod_B 1 AELPPEFAAQLRKIG 15 (27)
T ss_dssp CCCCTHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhC
Confidence 468999998888765
No 19
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=25.11 E-value=31 Score=23.84 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=26.2
Q ss_pred ecCcEEEEECCCCceeeeCCCCCcccHHHHHHhh
Q psy8191 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67 (257)
Q Consensus 34 ed~~~ivvnKP~Gl~~~~~~~~~~~tl~~~l~~~ 67 (257)
-|+.+-||||+.|-..++.......+|.++|..+
T Consensus 16 ~EerVpVi~~~tG~~l~G~~AP~~k~L~~WLk~n 49 (83)
T 2dl6_A 16 LETRIPVINKVDGTLLVGEDAPRRAELEMWLQGH 49 (83)
T ss_dssp TTSBCCEECSSSCCEECGGGSCBSTTHHHHHHHC
T ss_pred CCcceeeEeCCCCccccCCCchhHhHHHHHHhHC
Confidence 5678899999999988776555556788888654
No 20
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=24.40 E-value=36 Score=24.45 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.2
Q ss_pred CCCccEEEecCcEEEEE
Q psy8191 26 VIKLDIIYEDNEIIILN 42 (257)
Q Consensus 26 ~~~~~ilyed~~~ivvn 42 (257)
+.+-+|||||++++|+-
T Consensus 15 e~~~~iv~e~e~~~af~ 31 (119)
T 4egu_A 15 EIPSTKVYEDDRVLAFN 31 (119)
T ss_dssp SSCCCEEEECSSEEEEE
T ss_pred CCCCCEEEECCCEEEEE
Confidence 44568999999888754
No 21
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=24.36 E-value=36 Score=24.39 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=13.2
Q ss_pred CCCccEEEecCcEEEEE
Q psy8191 26 VIKLDIIYEDNEIIILN 42 (257)
Q Consensus 26 ~~~~~ilyed~~~ivvn 42 (257)
+.+-+|||||++++|+-
T Consensus 18 e~~~~iv~e~~~~~af~ 34 (117)
T 3oj7_A 18 QIPSTIVYEDDEIFAFK 34 (117)
T ss_dssp SSCCCEEEECSSEEEEE
T ss_pred CCCCCEEEECCcEEEEE
Confidence 45568999999887654
No 22
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=24.35 E-value=44 Score=21.78 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=26.5
Q ss_pred CcccCCEEEEEcCCCccccCcCcC---CCCCccEEEecCcE
Q psy8191 1 MIISGYELIIIKPKKNFFLNKTEK---KVIKLDIIYEDNEI 38 (257)
Q Consensus 1 ~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~ilyed~~~ 38 (257)
||.+|..|++.-|+..++.-.=.. .+-...||||..++
T Consensus 1 ~ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnW 41 (66)
T 2jz2_A 1 MIFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNW 41 (66)
T ss_dssp CCCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSC
T ss_pred CccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCc
Confidence 789999999999988866432222 23346788888753
No 23
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=24.12 E-value=36 Score=24.57 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=13.9
Q ss_pred CCCCccEEEecCcEEEEE
Q psy8191 25 KVIKLDIIYEDNEIIILN 42 (257)
Q Consensus 25 ~~~~~~ilyed~~~ivvn 42 (257)
.+++-++||||+.++|+-
T Consensus 13 ge~~~~iv~ede~~~af~ 30 (119)
T 3n1s_A 13 REIPSDIVYQDDLVTAFR 30 (119)
T ss_dssp TSSCCCEEEECSSEEEEE
T ss_pred CCCcCCEEEECCCEEEEE
Confidence 345668999999988764
No 24
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=21.52 E-value=60 Score=23.57 Aligned_cols=17 Identities=29% Similarity=0.598 Sum_probs=13.4
Q ss_pred CCCccEEEecCcEEEEE
Q psy8191 26 VIKLDIIYEDNEIIILN 42 (257)
Q Consensus 26 ~~~~~ilyed~~~ivvn 42 (257)
+++-+|||||+.++|+-
T Consensus 26 e~~~~iv~e~e~~~af~ 42 (126)
T 3o1c_A 26 EIPAKIIFEDDQALAFH 42 (126)
T ss_dssp SSCCCEEEECSSEEEEE
T ss_pred CCcCCEEEECCCEEEEE
Confidence 45568999999987764
No 25
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=20.19 E-value=98 Score=20.26 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=18.1
Q ss_pred EEEEecCHHHHHHHHHHHHc
Q psy8191 90 LMVVAKSIKSYIHLVNQLKM 109 (257)
Q Consensus 90 lll~Ak~~~~~~~l~~~f~~ 109 (257)
++|++|+.+.+..+.+.+++
T Consensus 50 Ilvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 50 CLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp EEEEESSHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 89999999999999988864
Done!