Your job contains 1 sequence.
>psy8191
MIISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL
FDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMV
WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK
TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN
LPDDISKLITFSGIKWI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8191
(257 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 462 8.1e-44 1
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 457 2.8e-43 1
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 449 1.9e-42 1
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 448 2.5e-42 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 419 2.9e-39 1
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 401 2.4e-37 1
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 398 4.9e-37 1
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 398 4.9e-37 1
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 242 3.6e-35 3
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 372 2.8e-34 1
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 370 4.6e-34 1
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 370 4.6e-34 1
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 369 5.8e-34 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 320 9.1e-29 1
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 301 9.4e-27 1
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 282 9.7e-25 1
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 282 9.7e-25 1
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 280 1.6e-24 1
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 261 1.6e-22 1
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 260 2.1e-22 1
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 255 7.0e-22 1
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 255 7.0e-22 1
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 254 9.0e-22 1
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 251 1.9e-21 1
TIGR_CMR|CJE_0022 - symbol:CJE_0022 "RNA pseudouridine sy... 249 3.0e-21 1
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 245 8.0e-21 1
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 242 1.7e-20 1
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 226 8.3e-19 1
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 225 1.3e-18 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 231 2.0e-18 1
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 216 9.5e-18 1
TIGR_CMR|GSU_3160 - symbol:GSU_3160 "RNA pseudouridine sy... 215 1.2e-17 1
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 217 3.7e-17 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 201 3.7e-16 1
TIGR_CMR|CPS_0536 - symbol:CPS_0536 "RNA pseudouridine sy... 209 4.5e-16 1
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 195 1.6e-15 1
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 195 1.6e-15 1
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 202 1.9e-15 1
DICTYBASE|DDB_G0280463 - symbol:DDB_G0280463 "Ribosomal l... 121 1.9e-15 3
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 193 3.4e-15 1
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 192 3.6e-15 1
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 200 4.5e-15 1
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 195 6.6e-15 1
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 195 6.6e-15 1
UNIPROTKB|P0AA41 - symbol:truC species:83333 "Escherichia... 188 8.8e-15 1
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 187 1.1e-14 1
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 187 1.1e-14 1
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 194 1.2e-14 1
POMBASE|SPAC18B11.02c - symbol:SPAC18B11.02c "tRNA pseudo... 190 2.2e-14 1
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 188 2.7e-14 1
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 193 3.7e-14 1
TIGR_CMR|CPS_4080 - symbol:CPS_4080 "pseudouridine syntha... 181 4.9e-14 1
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 129 1.0e-13 2
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 138 8.3e-13 2
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 181 9.6e-13 1
TIGR_CMR|CJE_0808 - symbol:CJE_0808 "RNA pseudouridine sy... 163 1.2e-12 2
DICTYBASE|DDB_G0271796 - symbol:DDB_G0271796 "pseudouridi... 132 1.9e-12 2
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 183 2.1e-12 1
DICTYBASE|DDB_G0281097 - symbol:DDB_G0281097 "pseudouridi... 128 3.3e-12 2
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 176 5.6e-12 1
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 177 1.1e-11 1
MGI|MGI:1918066 - symbol:Rpusd2 "RNA pseudouridylate synt... 178 1.4e-11 1
UNIPROTKB|F1PK69 - symbol:RPUSD2 "Uncharacterized protein... 177 2.1e-11 1
UNIPROTKB|Q9KRH4 - symbol:VC1668 "Pseudouridine synthase"... 163 6.0e-11 1
TIGR_CMR|VC_1668 - symbol:VC_1668 "pseudouridine synthase... 163 6.0e-11 1
UNIPROTKB|F1N088 - symbol:RPUSD2 "Uncharacterized protein... 172 9.6e-11 1
RGD|1306147 - symbol:Rpusd2 "RNA pseudouridylate synthase... 172 9.6e-11 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 167 1.1e-10 1
UNIPROTKB|B4DDD1 - symbol:RPUSD2 "cDNA FLJ57803, highly s... 170 1.4e-10 1
UNIPROTKB|Q8IZ73 - symbol:RPUSD2 "RNA pseudouridylate syn... 170 1.7e-10 1
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 165 2.1e-10 1
TAIR|locus:2824464 - symbol:AT1G56345 species:3702 "Arabi... 107 2.2e-10 2
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 164 2.2e-10 1
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 160 8.9e-10 1
WB|WBGene00019498 - symbol:K07E8.7 species:6239 "Caenorha... 159 2.8e-09 1
TIGR_CMR|CPS_3649 - symbol:CPS_3649 "tRNA pseudouridine s... 116 5.4e-09 2
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 136 6.5e-09 2
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 153 1.1e-08 1
GENEDB_PFALCIPARUM|PFE1080w - symbol:PFE1080w "ribosomal ... 150 4.2e-08 1
UNIPROTKB|Q8I3P7 - symbol:PFE1080w "Ribosomal large subun... 150 4.2e-08 1
UNIPROTKB|Q5E9Z1 - symbol:RPUSD4 "RNA pseudouridylate syn... 148 4.5e-08 1
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 147 4.9e-08 1
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 144 1.3e-07 1
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 143 1.8e-07 1
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 139 3.3e-07 1
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 140 4.0e-07 1
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 141 4.7e-07 1
UNIPROTKB|Q8I3Z1 - symbol:PFE0570w "MATH and LRR domain-c... 111 6.6e-07 3
UNIPROTKB|H3BSG4 - symbol:RPUSD1 "RNA pseudouridylate syn... 122 1.7e-06 1
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 134 2.0e-06 1
UNIPROTKB|H3BMZ6 - symbol:RPUSD1 "RNA pseudouridylate syn... 122 3.6e-06 1
UNIPROTKB|E1C0L7 - symbol:RPUSD1 "Uncharacterized protein... 128 4.0e-06 1
UNIPROTKB|H3BQN8 - symbol:RPUSD1 "RNA pseudouridylate syn... 122 4.0e-06 1
GENEDB_PFALCIPARUM|PFI0685w - symbol:PFI0685w "pseudourid... 94 6.4e-06 3
UNIPROTKB|Q8I312 - symbol:PFI0685w "Pseudouridylate synth... 94 6.4e-06 3
UNIPROTKB|O07166 - symbol:Rv3300c "Pseudouridine synthase... 122 3.3e-05 1
SGD|S000004155 - symbol:PUS5 "Pseudouridine synthase" spe... 117 8.2e-05 1
ASPGD|ASPL0000068180 - symbol:AN10936 species:162425 "Eme... 121 0.00012 1
TIGR_CMR|CPS_3679 - symbol:CPS_3679 "RNA pseudouridine sy... 115 0.00024 1
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 106/235 (45%), Positives = 148/235 (62%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I+LDI+YED++I+++NK AGLVVHPA G+ GTL + LL P +INVPRAGIVHRLDK+
Sbjct: 81 IELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHIPDIINVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK+I++ LV QL+ V R Y +V G+ G INA I R+ R +M V
Sbjct: 141 TTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQRQRMAV 200
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ K A+++Y R+ + H+ R L+TGRTHQIRVHM + +VGD YG
Sbjct: 201 MEG--GKQAVSHY-RVLERFRSHTHV---RVKLETGRTHQIRVHMAHINFPLVGDPAYGG 254
Query: 207 KY------SKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
++ S++++ F RQALHA L L HP +++ W LPDD L++
Sbjct: 255 RFRIPPAASQTMVDSLKNFPRQALHARFLELDHPTTGIRMSWESPLPDDFVWLLS 309
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 103/239 (43%), Positives = 151/239 (63%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I L+I+YED+ I+++NK AGLVVHP GN GTL + LL YP L VPRAGIVHR
Sbjct: 78 EAQNIPLNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALLHHYPALNVVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK+I + +LV+ L++ + R+Y A+ G+ G+++ I R+ R
Sbjct: 138 LDKDTTGLMVVAKTIAAQTNLVDALQLREITREYEAVANGVMTAGGLVDEPIGRHSTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHI-SLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+M VS + +P++T+Y ++ K + + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 QMAVS--YIGRPSVTHYR-----VMEKYRLHTRLRLRLETGRTHQIRVHMSHITHPLVGD 250
Query: 202 NLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K +++L+ F RQALHA L L HP ++ W LP+D +LI
Sbjct: 251 PVYGGRPRPPKNSTEALLMKLRSFKRQALHAAMLSLFHPITGEEMTWHAELPEDFVELI 309
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 105/238 (44%), Positives = 145/238 (60%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 197
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V KPA+T+Y R+ + H L R L+TGRTHQIRVHM + H +VGD
Sbjct: 198 HMAVHPM--GKPAVTHY-RIMEHF--RVHTRL-RLRLETGRTHQIRVHMAHITHPLVGDP 251
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 107/245 (43%), Positives = 153/245 (62%)
Query: 22 TEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP-FLINVPRA--- 77
T I + ++YED++III+NK+ G+ VHP G + TL + L+ Y L +V +A
Sbjct: 89 TPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKATRP 148
Query: 78 GIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP--KLNGMINAAIM 135
GI+HRLDK++SGLMV+AK+ KSY L + L ++++YLA+VWG+P K N + N +
Sbjct: 149 GIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTIKNYICV 208
Query: 136 RNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194
+ P+N+ MTV+ K A+T Y+ T SLI+C + TGRTHQIRVHM ++
Sbjct: 209 K-PNNKQMMTVTHLPHKGKLAITEYQ---TQKSFSNIASLIKCRIHTGRTHQIRVHMSYI 264
Query: 195 GHGIVGDNLYGK------KYSK-SLIFN---RQALHAYKLGLIHPKNNLKLKWRINLPDD 244
G+ I+GD YGK KY+K S I N RQALHAYKLG HP +N +++ +P+D
Sbjct: 265 GNSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNTYIEFHSYIPND 324
Query: 245 ISKLI 249
I LI
Sbjct: 325 IQMLI 329
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 105/252 (41%), Positives = 150/252 (59%)
Query: 3 ISGYELI-IIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
+ G E+I ++ P K E+ I LDI+YED +++++NK AG+VVHPA GN GTL
Sbjct: 57 VRGGEIIAVLLPPPRELSVKPEE--IPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLV 114
Query: 62 DNLL---EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
+ LL + + V R GIVHRLDK++SGL+VVAK+ ++ L Q+K R+Y
Sbjct: 115 NALLYHCQNLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWT 174
Query: 119 MVWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRC 177
+V G K G+I+ I R+P +R KM V N K A T Y+ L NK +LI+
Sbjct: 175 IVHGYLKNKEGIIDLPIGRHPRDRQKMAVVSN--GKTAQTVYKVLEE--FNKG-FTLIQA 229
Query: 178 NLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKW 237
L TGRTHQIRVH +LGH ++GD YG + + + RQ LHA KL IHP++ L++
Sbjct: 230 KLLTGRTHQIRVHFSYLGHPVLGDPKYGHQNNPFGV-KRQMLHAIKLSFIHPRSGELLEF 288
Query: 238 RINLPDDISKLI 249
LP+D +++
Sbjct: 289 TAPLPEDFQRVL 300
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 98/244 (40%), Positives = 149/244 (61%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGI 79
E + I L +++ED ++++++K AG+VVHPA GN GTL + LL L + R GI
Sbjct: 78 EAEEIPLVVLHEDGDVVVVDKPAGMVVHPAAGNPGGTLVNALLAHCTDLSGIGGEIRPGI 137
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNP 138
VHR+DK++SG++VVAKS +++ L Q H V+R YLA+V+G P+ + G I AI R+P
Sbjct: 138 VHRIDKDTSGVLVVAKSDRAHESLSRQFHDHTVKRVYLALVYGSPREDKGRIEGAIGRHP 197
Query: 139 HNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
+R KM+ + + K A+T++ R+A ++L+R L+TGRTHQIRVHM G +
Sbjct: 198 TDRKKMSGAAR-HGKHAVTHW-RVAARFTG---VTLLRLRLETGRTHQIRVHMAEAGFPL 252
Query: 199 VGDNLYG---------KKYSKSLI--FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
VGD +YG + LI RQALHA LG +HP L++ LP+D+++
Sbjct: 253 VGDEVYGGAGRINNLRDPVLRKLIRELGRQALHAKTLGFVHPVTGEYLEFDTELPEDMAR 312
Query: 248 LITF 251
+I +
Sbjct: 313 IIDY 316
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 102/257 (39%), Positives = 150/257 (58%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E+I ++ + + E + + L+I+YED++II++NK VVHP G T+ +
Sbjct: 59 VMGGEVITVQAELEDE-QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLN 117
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL Y + VPRAGIVHRLDK+++GLMVVAK++ + LV L+ V R+Y A+V G
Sbjct: 118 ALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
GMI+ I R+ R M+VS K A+T+Y R+A ++H L R L+TG
Sbjct: 178 TMTAGGMIDKPIGRHSTKRTLMSVSPM--GKHAVTHY-RVAEHF--REHTRL-RLRLETG 231
Query: 183 RTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKN 231
RTHQIRVHM +L H ++GD YG K ++ L F+RQALHA L HP
Sbjct: 232 RTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVT 291
Query: 232 NLKLKWRINLPDDISKL 248
+L++ +PDD+ ++
Sbjct: 292 GEELEFHAPVPDDMVEM 308
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 102/257 (39%), Positives = 150/257 (58%)
Query: 3 ISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD 62
+ G E+I ++ + + E + + L+I+YED++II++NK VVHP G T+ +
Sbjct: 59 VMGGEVITVQAELEDE-QRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLN 117
Query: 63 NLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
LL Y + VPRAGIVHRLDK+++GLMVVAK++ + LV L+ V R+Y A+V G
Sbjct: 118 ALLFHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177
Query: 123 IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
GMI+ I R+ R M+VS K A+T+Y R+A ++H L R L+TG
Sbjct: 178 TMTAGGMIDKPIGRHSTKRTLMSVSPM--GKHAVTHY-RVAEHF--REHTRL-RLRLETG 231
Query: 183 RTHQIRVHMQWLGHGIVGDNLYG------KKYSKSLI-----FNRQALHAYKLGLIHPKN 231
RTHQIRVHM +L H ++GD YG K ++ L F+RQALHA L HP
Sbjct: 232 RTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVT 291
Query: 232 NLKLKWRINLPDDISKL 248
+L++ +PDD+ ++
Sbjct: 292 GEELEFHAPVPDDMVEM 308
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 242 (90.2 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 57/148 (38%), Positives = 86/148 (58%)
Query: 76 RAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAI 134
R GIVHRLDK ++GL+VVAK S+ HL Q K+H ++R Y+++ G+P G I I
Sbjct: 226 RPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPI 285
Query: 135 MRNPHNRIKMTVS----KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190
R+ NRI+M + A+ A + Y+ + T +L+ L+TGRTHQIR H
Sbjct: 286 GRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGS--ALVEWRLETGRTHQIRAH 343
Query: 191 MQWLGHGIVGDNLYG--KKYSKSLIFNR 216
+++G ++GD +YG K + SL+ R
Sbjct: 344 AKYMGVPLLGDEVYGGTKSMALSLLQKR 371
Score = 123 (48.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 21 KTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
K E + I LDI+YED ++++NK A +VVHPA GN +GTL + +L
Sbjct: 140 KAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGIL 184
Score = 55 (24.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 215 NRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+R LHA LG HP +K+ P D+++++
Sbjct: 388 DRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIV 422
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 86/206 (41%), Positives = 123/206 (59%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF----LINVPRAGIVHRLD 84
LD+ YED+ ++++ K AGLVVHP IGN TL + L YP ++ R GIVHRLD
Sbjct: 79 LDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSSLDSSRPGIVHRLD 138
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNRIK 143
K+++G ++VAK+ +++ L +K +++R+YLA+V +P L+G I I R K
Sbjct: 139 KDTAGFLIVAKTNPAHLSLSQMIKEGVIRREYLALVHSVPASLSGEIKKPIKRGQR---K 195
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
M + + + KPALTYY +A + K SL+ C L +GRTHQIR+HM+ +G +VGD L
Sbjct: 196 MMIGR-CSGKPALTYYGVIARTVDRK--CSLVHCRLGSGRTHQIRLHMKSIGCPVVGDKL 252
Query: 204 YGKKYSKSLIFNRQALHAYKLGLIHP 229
YG L AL AY L HP
Sbjct: 253 YGLNRDADLCAPHHALWAYSLQFRHP 278
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 99/242 (40%), Positives = 132/242 (54%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI----NVPRAGIVHR 82
I L IIYED II+++K+ + VHP G + TL LL + N R GI+HR
Sbjct: 81 IPLHIIYEDEHIIVIDKAPNIAVHPGHGTKNDTLAHALLAHCGNALCAVGNSHRPGIIHR 140
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMI---NAAIMRNPH 139
LDK++SGLMV+AK+ K+Y+ L L+ +++YLA++WG+P N + R+
Sbjct: 141 LDKDTSGLMVIAKTEKAYLVLSQALEEKKFRKEYLALIWGVPTTKHCFIQTNLDVKRSDK 200
Query: 140 NRIKMTVSKNFNAKPALTYYERLATGIINKKH---ISLIRCNLKTGRTHQIRVHMQWLGH 196
+++T+S+ K A T Y II K SL RC L TGRTHQIRVHM +GH
Sbjct: 201 TMMEVTLSRG---KHANTEY------IIEKTFGNVASLARCILHTGRTHQIRVHMSHIGH 251
Query: 197 GIVGDNLYGKKYSKSLI--------FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKL 248
+VGD YGK KSL F RQALHA LG HP L + N DI +L
Sbjct: 252 SVVGDQKYGKNNKKSLRCGIPEVRNFKRQALHACLLGFHHPCTGEYLCFNSNPAKDIQEL 311
Query: 249 IT 250
I+
Sbjct: 312 IS 313
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 89/227 (39%), Positives = 136/227 (59%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFL--INVP-RAGIVHRL 83
I L+II++D +++++NK GL VHPA G+ TL + +L + P + + P R GIVHRL
Sbjct: 76 IPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPEMEDFDDPLRPGIVHRL 135
Query: 84 DKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRI 142
DK++SGL++VAK+ ++ +L Q K V++ YL +V G + G I A + R+P NR
Sbjct: 136 DKDTSGLLLVAKNREALANLSAQFKERTVRKYYLTLVQGELHPAEGFIEAPLGRDPQNRQ 195
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
K+ V N +PA T Y+ L I + SL+ L+TGRTHQIRVH +GH + GD
Sbjct: 196 KIAVVSN--GRPARTGYKVLR--YI--QGYSLLEVKLETGRTHQIRVHFAAIGHPVAGDA 249
Query: 203 LYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG+K + RQ LHA++L P N +++ LP D+ + +
Sbjct: 250 VYGQKETW---LKRQFLHAHRLSFSLPSNGQNVEFSSPLPPDLEEAL 293
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 91/234 (38%), Positives = 133/234 (56%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LD+IYED ++++NK GL+VHP G TL + LL P L VPRAGI+HRLDK+
Sbjct: 87 IPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHYDPSLSVVPRAGIIHRLDKD 146
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
+SGL+++A+++ S+ L+ +K + R+Y A+V G+ I A + R+P +R +M V
Sbjct: 147 TSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLISGRTIEAPVGRHPIHRTRMAV 206
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ F +PA+T++ R+ HI R L+TGRTHQIRVHM + H + GD +YG
Sbjct: 207 VE-FG-RPAITHF-RIIKRYRAHTHI---RVQLETGRTHQIRVHMAHIHHPLAGDPVYGS 260
Query: 207 KY------SKSL-----IFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
S L RQALHA L HP + + LP D++ L+
Sbjct: 261 HVGIPVHLSDPLQTALKTLKRQALHAATLQFSHPVDQRPMACHAPLPADMAHLL 314
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 77/204 (37%), Positives = 124/204 (60%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
LDIIY+D++I++LNK++G++ P G L + L+ + +P A IVHRLD +S
Sbjct: 17 LDIIYQDDDIVVLNKASGILSVP--GRLPE--HQDCLQNRVQRV-LPTATIVHRLDMATS 71
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVS 147
G+M++A + +++ + Q + Q+ YLA VWG+ +LN G ++ ++ + NR K V
Sbjct: 72 GIMIMALNKPAHVAISRQFEQRKTQKSYLARVWGLVELNEGSVDLPLISDWPNRPKQKVD 131
Query: 148 KNFNAKPALTYYERLA-TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
N K +LT+Y L+ I+++ +L+ TGR+HQ+RVHM LGH I+GD LY
Sbjct: 132 HE-NGKKSLTHYRVLSHNDSIDEQANTLLELTPITGRSHQLRVHMLALGHPILGDRLYAP 190
Query: 207 KYSKSLIFNRQALHAYKLGLIHPK 230
+ + ++ NR LHA KL L HP+
Sbjct: 191 EEALTMR-NRLQLHALKLSLFHPR 213
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 85/235 (36%), Positives = 133/235 (56%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAGIVHRLDK 85
+D++YED ++++LNK + LVVH A + TL D L+E L N+ RAG+VHRLDK
Sbjct: 77 IDVLYEDEDLLVLNKPSNLVVHGASSVKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDK 136
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG--MINAAIMRNPHNRIK 143
++SG +++AK+ ++ L QL + R YLA++ +P ++ +MR+P N IK
Sbjct: 137 DTSGSILIAKNNFTHQKLSEQLADKSMGRIYLALI-DLPLKEDKIIVEKFLMRSPSNAIK 195
Query: 144 -MTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+ + K N +K A + + ++ ++++L+ L TGRTHQIR H+ L I+GD
Sbjct: 196 KIAIDKENKFSKNAKSAF----INVVKTENLTLMAAKLFTGRTHQIRAHLASLNRHILGD 251
Query: 202 NLYGK--KYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGI 254
LYG KY ++ LHAY L IHPK ++ + L +D K I F I
Sbjct: 252 GLYGYNGKYDCRIM-----LHAYFLYFIHPKTKEQIFVKAPLMEDF-KNIMFEQI 300
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 78/234 (33%), Positives = 124/234 (52%)
Query: 25 KVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
KV +L+ I+YED+ ++ILNK +G VH G G + + L + P +VHR
Sbjct: 89 KVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALRALRP---QARFLELVHR 144
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNR 141
+D+++SG+++VAK + HL Q + VQ+ Y A+V G ++NA +++N N
Sbjct: 145 IDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS 204
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
I V N N KP+ T + I+ K +L++ + TGRTHQIRVH Q++GH I
Sbjct: 205 I---VRVNPNGKPSETRFR-----ILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAW 256
Query: 201 DNLYGKK----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
D+ YG + Y+ R LHA + +HP + KL+ L + + +T
Sbjct: 257 DDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALT 310
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 78/234 (33%), Positives = 124/234 (52%)
Query: 25 KVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
KV +L+ I+YED+ ++ILNK +G VH G G + + L + P +VHR
Sbjct: 89 KVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALRALRP---QARFLELVHR 144
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNR 141
+D+++SG+++VAK + HL Q + VQ+ Y A+V G ++NA +++N N
Sbjct: 145 IDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNS 204
Query: 142 IKMTVSKNFNAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
I V N N KP+ T + I+ K +L++ + TGRTHQIRVH Q++GH I
Sbjct: 205 I---VRVNPNGKPSETRFR-----ILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAW 256
Query: 201 DNLYGKK----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
D+ YG + Y+ R LHA + +HP + KL+ L + + +T
Sbjct: 257 DDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEAHLEQALT 310
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 76/205 (37%), Positives = 110/205 (53%)
Query: 74 VPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-----KLNG 128
V R GIVHR+DK++SGL+VVAKS ++ L Q H +R Y A+ +G+P +L G
Sbjct: 134 VKRPGIVHRIDKDTSGLLVVAKSDAAHHGLAAQFAAHSAERHYTALCYGVPDGSDPRLRG 193
Query: 129 MINAAIMRNPHNRIKMTVSKNFNA----KPALTYY--------ERLATGIINKKHISLIR 176
+ A+ P N +++T + + A+ ++ R+ +SLI
Sbjct: 194 VKGASF--EPGNILRLTTQLTRHPTDRQRQAVVFHGGRHAVTRARVVESFGQPAAVSLID 251
Query: 177 CNLKTGRTHQIRVHMQWLGHGIVGDNLYG--KKYSKSLI----------FNRQALHAYKL 224
C L+TGRTHQIRVHM GHG++GD +YG +K S + F RQALHA L
Sbjct: 252 CWLETGRTHQIRVHMAHAGHGLLGDPVYGGRRKLSPRALSPEAVDAIGAFPRQALHAAVL 311
Query: 225 GLIHPKNNLKLKWRINLPDDISKLI 249
G HP + KL + LPDD+ +L+
Sbjct: 312 GFEHPLSGEKLSFSAPLPDDLERLL 336
Score = 220 (82.5 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 52/130 (40%), Positives = 81/130 (62%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL----EIYPFLINVPRAGIV 80
+ I L ++YED+++I+++K AG+VVHPA G SGTL + LL + + V R GIV
Sbjct: 81 EAIPLVVVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALLAHCGDNLSGVGGVKRPGIV 140
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-----KLNGMINAAIM 135
HR+DK++SGL+VVAKS ++ L Q H +R Y A+ +G+P +L G+ A+
Sbjct: 141 HRIDKDTSGLLVVAKSDAAHHGLAAQFAAHSAERHYTALCYGVPDGSDPRLRGVKGASF- 199
Query: 136 RNPHNRIKMT 145
P N +++T
Sbjct: 200 -EPGNILRLT 208
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 71/217 (32%), Positives = 120/217 (55%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIG-NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNS 87
LD+++ED E+I+LNK AGL+ P G +L+ L + +P + +VHRLD+++
Sbjct: 12 LDVLHEDAELIVLNKPAGLLSVPGRGAHLADCLLSRVQAAFPGAL------LVHRLDRDT 65
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI--PKLNGMINAAIMRNPHNRIKMT 145
SG+MV A++ + +L Q + ++ Y+A +WG PK G ++ ++ + NR +
Sbjct: 66 SGVMVFAQTPHAQRNLGRQFEERKTRKTYVARLWGRLEPK-TGTVDLPLIVDWPNRPRQM 124
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V KPA+T + L + + +R +TGR+HQ+RVH Q LGH I+GD Y
Sbjct: 125 VCHE-TGKPAVTDWRVLRY----EGDTTRVRLLPRTGRSHQLRVHCQALGHPILGDPFYA 179
Query: 206 KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
+++ F R LH+ +L L HP++ + +R P
Sbjct: 180 TGAAQA--FPRLMLHSEELRLKHPESGRSMTFRAPAP 214
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 71/223 (31%), Positives = 115/223 (51%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI-VHRLDKNSSG 89
++YED+ +I+++K AG++ HP + + ++ + L Y + ++RLD+N+SG
Sbjct: 79 VLYEDDYLIVIDKPAGVLAHPVKNHFAPSMQELTLSYYRDKGRIFEGFYPIYRLDRNTSG 138
Query: 90 LMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVSK 148
M++AK L N L+ + + YLA++ G + +G+IN + + IK V
Sbjct: 139 PMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGPLADKSGIINLPLGLLEGSIIKRAVVP 198
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY 208
+PA T Y+ + H +L++ L TGRTHQIR H +GH + GD+LYG K
Sbjct: 199 G--GQPACTKYQTVKAF---PTH-TLLKVELLTGRTHQIRAHFAAIGHPLAGDDLYGGKM 252
Query: 209 SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK-LIT 250
+ RQALH Y + HP + LP D + LIT
Sbjct: 253 D---LIERQALHLYYISFPHPITKKTISLYAPLPRDFKEALIT 292
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 69/206 (33%), Positives = 110/206 (53%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV-PRAGIVHRLDKNS 87
+D+IYED II NK +GL+ P G ++ ++ L++ P +VHRLD ++
Sbjct: 14 IDVIYEDEHIIAANKPSGLLSVP------GRPVEHYDSMWARLVDYCPDVKVVHRLDMST 67
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTV 146
SGL++ AK L Q + + + Y A VWG+ + N G +N + + NR K V
Sbjct: 68 SGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV 127
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ +LT Y+ + ++ +++R TGR+HQ+RVHMQ LGH IVGD+LY
Sbjct: 128 CFE-EGRDSLTRYQVVK----REEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAP 182
Query: 207 KYSKSLIFNRQALHAYKLGLIHPKNN 232
+ +R LHA +L HP+++
Sbjct: 183 PEAVEFA-DRLQLHAAELCFYHPRSH 207
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 69/206 (33%), Positives = 110/206 (53%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINV-PRAGIVHRLDKNS 87
+D+IYED II NK +GL+ P G ++ ++ L++ P +VHRLD ++
Sbjct: 14 IDVIYEDEHIIAANKPSGLLSVP------GRPVEHYDSMWARLVDYCPDVKVVHRLDMST 67
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTV 146
SGL++ AK L Q + + + Y A VWG+ + N G +N + + NR K V
Sbjct: 68 SGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNRPKQKV 127
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
+ +LT Y+ + ++ +++R TGR+HQ+RVHMQ LGH IVGD+LY
Sbjct: 128 CFE-EGRDSLTRYQVVK----REEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAP 182
Query: 207 KYSKSLIFNRQALHAYKLGLIHPKNN 232
+ +R LHA +L HP+++
Sbjct: 183 PEAVEFA-DRLQLHAAELCFYHPRSH 207
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 78/232 (33%), Positives = 124/232 (53%)
Query: 24 KKVIKL-DII-YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81
+KV L D+I YED+ I++LNK +G VH G LS + + L + P +VH
Sbjct: 86 QKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP---EARFLELVH 141
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHN 140
RLD+++SG+++VAK + L QL+ +Q+ YLA+V G + + + A +++N
Sbjct: 142 RLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQ 201
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHI--SLIRCNLKTGRTHQIRVHMQWLGHGI 198
+ V + KP+ T ++ + +++ +L+RC+ TGRTHQIRVH Q+ GH I
Sbjct: 202 SGERIVRVSQEGKPSETRFK------VEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPI 255
Query: 199 VGDNLYG-KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
D+ YG +++ + L NR LHA L HP + RI P D
Sbjct: 256 AFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM--RIEAPMD 305
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 64/205 (31%), Positives = 118/205 (57%)
Query: 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFD-NLLEIYPFLINVPRAGIVHRLD 84
+I+ ++YED++++I+NK AG+ V GT ++ +I + + IVHRLD
Sbjct: 88 LIRNSVVYEDDDVLIINKPAGISVQ------GGTKVKISISDIVDKIRDGESMKIVHRLD 141
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIK 143
K++SG++++A++ + ++++ K V++KYLA+ GIPK + G IN +I++N +
Sbjct: 142 KDTSGILMLARNARISRLIMHEFKNRRVEKKYLALTQGIPKNDIGQINHSIIKNKRSLSL 201
Query: 144 MTVSKNF--NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
V+ ++ A + + ++L GI L+ TGR HQIR+H+ +G I+GD
Sbjct: 202 DKVNDSYLQEAVTSFSVLKKLPYGI------GLLELKPITGRKHQIRIHLSHIGCSIIGD 255
Query: 202 NLYGKKYSKSLIFNRQALHAYKLGL 226
YGK + + ++ + LHAY L +
Sbjct: 256 KKYGK-FCEHVLNDNLQLHAYFLSI 279
>TIGR_CMR|CJE_0022 [details] [associations]
symbol:CJE_0022 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
HOGENOM:HOG000275921 RefSeq:YP_178049.1 ProteinModelPortal:Q5HXD6
STRING:Q5HXD6 GeneID:3230677 KEGG:cjr:CJE0022 PATRIC:20041733
OMA:DFAHARV ProtClustDB:CLSK872338
BioCyc:CJEJ195099:GJC0-21-MONOMER Uniprot:Q5HXD6
Length = 300
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 75/257 (29%), Positives = 132/257 (51%)
Query: 10 IIKPKKNFFLNKTEKKVIK------LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDN 63
I+ +KN LN + ++ ++I++E+ + IL K +G++ HP + +L D
Sbjct: 44 ILVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSDE 103
Query: 64 LLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI 123
+ ++ A + HRLDK +SGL++VAK+ K+ I L + +VQ++YLA+ G
Sbjct: 104 IWHLWG-----KEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGK 158
Query: 124 PKLNGMINAAI-MRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTG 182
+ N +I+ AI + ++ +K + K A+T +E L K + +L+ C TG
Sbjct: 159 IEENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILE--YFPKINATLLLCKPLTG 216
Query: 183 RTHQIRVHMQWLGHGIVGDNLYG--KKYSKSLIFN--------------RQALHAYKLGL 226
R HQIRVH+ + H I+GD LYG K+ +S++ R LH+Y+L
Sbjct: 217 RQHQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF 276
Query: 227 IHPKNNLKLKWRINLPD 243
+ N + +IN+ +
Sbjct: 277 QYKNQNFNINSKINIKE 293
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 71/211 (33%), Positives = 110/211 (52%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L I+Y+D+ I+++NK +GL+ P G L + I + P+A VHRLD +S
Sbjct: 14 LVILYQDDHIMVVNKPSGLLSVP--GRLEEHKDSVMTRIQR---DYPQAESVHRLDMATS 68
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRIKMTVS 147
G++VVA + + L Q + +++Y+A VWG P G+++ ++ + NR K V
Sbjct: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128
Query: 148 KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207
KPA T YE + N + L TGR+HQ+RVHM LGH I+GD Y
Sbjct: 129 YE-TGKPAQTEYEVVEYAADNTARVVLKPI---TGRSHQLRVHMLALGHPILGDRFYASP 184
Query: 208 YSKSLIFNRQALHAYKLGLIHPK--NNLKLK 236
++++ R LHA L + HP N++ K
Sbjct: 185 EARAMA-PRLLLHAEMLTITHPAYGNSMTFK 214
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 75/230 (32%), Positives = 114/230 (49%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
++ I++ED+ +I++NK +G+ VH G LS L + L + P +VHRLD++
Sbjct: 134 LEKQILFEDDRLIVINKPSGMAVHGGSG-LSFGLIEALRALRP---EARMLELVHRLDRD 189
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-P-KLNGMINAAIMRNPHNRIKM 144
+SG ++VAK + HL Q + VQ+ Y A+V G P KL + +A + + ++
Sbjct: 190 TSGCLMVAKKRSTLRHLHEQFRDKNVQKFYHALVKGHWPTKLTRVTDALKKNDLKSGERV 249
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V N K + T + L + +L+R TGRTHQIRVH Q GH I D Y
Sbjct: 250 VVVDNQLGKESETRFRVLE----RYRGATLVRAFPVTGRTHQIRVHCQTSGHSIAMDAKY 305
Query: 205 GKK----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
G + KS R LHA + HP +LK L + KL++
Sbjct: 306 GHEEFDEQMKSKGLKRLFLHAASIEFTHPNTEQRLKIEAPLEASLEKLLS 355
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 67/216 (31%), Positives = 109/216 (50%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
++ I++ED +I++NK AG+ VH G L+ + + ++ P + +VHRLD++
Sbjct: 93 LEASIVFEDKALIVINKPAGIAVHGGSG-LNFGVIEAFRQLRP---DAKELELVHRLDRD 148
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRIKMT 145
+SGL+++AK HL L+ V ++Y+A+V G + A ++++ +
Sbjct: 149 TSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWATAVKQVRAPLLKSNLRSGERM 208
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V N K ALT ++ L +++ TGRTHQIRVH GH I GD+ YG
Sbjct: 209 VEVNEEGKEALTVFKVLRRF---GDFATMVEAKPVTGRTHQIRVHTLHAGHCIAGDSKYG 265
Query: 206 K----KYSKSLIFNRQALHAYKLGLIHPKNN-LKLK 236
+ + L R LHAY L + P LKL+
Sbjct: 266 DDDFTREIRELGGKRLFLHAYMLTVPLPDGGELKLQ 301
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 225 (84.3 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 75/248 (30%), Positives = 118/248 (47%)
Query: 19 LNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78
++ ++ K+I+ +++ D++II+LNK AGL V G D L E F N
Sbjct: 81 VSDSDAKLIRACVLHRDDDIIVLNKPAGLAVQGGSGQTRHV--DGLSEALRFG-NDENPR 137
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMR- 136
+VHRLDK++SG++V+A++ ++ L + ++ Y A+V G+P G I +++
Sbjct: 138 LVHRLDKDTSGVLVLARTREAAARLTAAFRHRNTRKIYWALVAGVPTPYLGEIKTGLVKA 197
Query: 137 NPHNRI----KMTVS--KNFNAKP----ALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186
H KM V +A P A TYY L + + S + TGRTHQ
Sbjct: 198 GGHGARGEGEKMNVVHLSELDATPGAKRAHTYYATLYR-VAGRA--SWVAMEPVTGRTHQ 254
Query: 187 IRVHMQWLGHGIVGDNLYGKKYSKSL-----------IFNRQALHAYKLGLIHPKNNLKL 235
+R HM +GH I+GD YG ++L I + LHA L HP K+
Sbjct: 255 LRAHMAGIGHPIIGDGKYGGSGQENLGDGWGAQLGGIISKKLHLHARSLSFEHPSTRKKV 314
Query: 236 KWRINLPD 243
+ LP+
Sbjct: 315 TFTAPLPE 322
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 231 (86.4 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 60/195 (30%), Positives = 112/195 (57%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH---RLDK 85
+ I++ED+++++++K G+ VHP G ++ + +I+ + IVH RLD+
Sbjct: 171 IKIVFEDDDLLVIDKPGGIPVHPT-GRYR---YNTVTKIFEH----EKGKIVHPCNRLDR 222
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMT 145
+SGLM + KS K ++++Q++ V ++Y+A V G L+ +I + ++ +
Sbjct: 223 LTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVKGEFPLDRIIVDKPLSTKSPKLTLN 282
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V N K A T ++R++ I + S+++C+ TGRTHQIRVH+Q+LG+ I D +Y
Sbjct: 283 VVDMENGKEAKTEFQRVSYDPIT--NTSVVKCHPLTGRTHQIRVHLQFLGYPIANDPIYS 340
Query: 206 KKY--SKSLIFNRQA 218
++ K+L N +A
Sbjct: 341 SEFVWGKNLGENGEA 355
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 70/210 (33%), Positives = 107/210 (50%)
Query: 13 PKKNFFLNKTEKKVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF 70
PKK ++ EK +I L+ I+YE+ ++++++K AGL VH G + G + + L + P
Sbjct: 71 PKKPATVD--EKLLISLEMRILYEEADLLVIDKPAGLPVHGGSG-IQGGVIEALRIMRP- 126
Query: 71 LINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG-- 128
V +VHRLD+ +SG ++VAK + + L L V ++YL +V G + G
Sbjct: 127 --KVRLLELVHRLDRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKG--QWQGGE 182
Query: 129 -MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQI 187
+ + +N + V K A+T + L I + SLI TGRTHQI
Sbjct: 183 CRVEVPLKKNRLQSGERMVKVEKEGKSAVTVFRPLK--IFEQA--SLIEAKPLTGRTHQI 238
Query: 188 RVHMQWLGHGIVGDNLYGKKYSKSLIFNRQ 217
RVH LG+ I GD YG K +FNR+
Sbjct: 239 RVHAAHLGYPIAGDEKYGDK-----VFNRE 263
>TIGR_CMR|GSU_3160 [details] [associations]
symbol:GSU_3160 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275920 KO:K06175
OMA:FANHSIE RefSeq:NP_954201.1 ProteinModelPortal:Q747V5
GeneID:2686768 KEGG:gsu:GSU3160 PATRIC:22029179
ProtClustDB:CLSK763245 BioCyc:GSUL243231:GH27-3194-MONOMER
Uniprot:Q747V5
Length = 250
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 75/243 (30%), Positives = 117/243 (48%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
++I++ D ++ ++K AGL+VH + + T F L E+ L R VHRLDK +S
Sbjct: 1 MEILFRDQYLVAVHKPAGLLVHRSPIDRHETRFA-LQEVRDLLGR--RVYPVHRLDKPTS 57
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK 148
G++V A + L + V + YLA+ GI G+I+ ++ P +R+ S
Sbjct: 58 GVLVFALDPATARSLGDAFAGGRVNKTYLAVTRGIVPPEGIIDHSLSEEP-DRLDGAKSS 116
Query: 149 NFNAKPALTYYERLA-------TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+PA+T + RLA TG SL TGR HQ+R HM+ + H I+GD
Sbjct: 117 PAAPQPAVTVFRRLAEAELPVVTGRYASSRYSLAELTPHTGRRHQLRRHMKHIFHPIIGD 176
Query: 202 NLYGKK-----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD--ISKLITFSGI 254
YG+ + + R LHA +L L HP + L I P D +++L+ G
Sbjct: 177 TTYGEGRHNRFFREEFGCGRLLLHAAELSLPHPASGETLT--IAAPPDRELARLLDRLG- 233
Query: 255 KWI 257
W+
Sbjct: 234 -WL 235
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 217 (81.4 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 58/179 (32%), Positives = 100/179 (55%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+ +I+ED+ I++++K +G+ VHP T+ L F++N P +RLD+ +S
Sbjct: 188 IKVIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFVVN-P----CNRLDRLTS 242
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAI-MRNPHNRIKMTV 146
GLM +AK+ K ++ +QLK V ++Y+A V G P+ ++ + + P +
Sbjct: 243 GLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEPRLALNAVC 302
Query: 147 SKNFN-AKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+ AK A T + R++ + K S+++C TGR+HQIRVH+Q+LGH I D +Y
Sbjct: 303 QMDEKGAKHAKTVFNRIS---YDGK-TSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIY 357
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSG 89
DI++ED + +NK++GL L GT+ + + + A ++HRLD+ +SG
Sbjct: 80 DILFEDGGYLAVNKASGLNCQRTPYQLKGTVEYAVTLHFRACGSAEPARVIHRLDRGTSG 139
Query: 90 LMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNG-MINAAIMRNPHNRIKMTVSK 148
+M+ S ++ H+ +LK V++ Y A+V G+P + ++A + + +R +
Sbjct: 140 VMIFPASRRAAAHISRELKEGRVEKVYWALVAGMPLADSWQVDAPVAKVGTSRYGVAPV- 198
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
K ALT + +A G +L+ +TGRTHQIRVH+ G I+GD YG
Sbjct: 199 ---GKAALTEFRVVARG----NGATLVEARPRTGRTHQIRVHLAHGGLSIIGDTTYG 248
>TIGR_CMR|CPS_0536 [details] [associations]
symbol:CPS_0536 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_267294.1 ProteinModelPortal:Q489H0 STRING:Q489H0
GeneID:3520534 KEGG:cps:CPS_0536 PATRIC:21464415
HOGENOM:HOG000222064 OMA:MAEFWWG ProtClustDB:CLSK896118
BioCyc:CPSY167879:GI48-631-MONOMER Uniprot:Q489H0
Length = 567
Score = 209 (78.6 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 69/232 (29%), Positives = 120/232 (51%)
Query: 3 ISGYELIIIKPKKN-FFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF 61
I G+ L ++ KN +N E I L+I+++D ++++NK AGL+ P ++ +++
Sbjct: 339 ILGHMLEGMEVDKNPLLINPAEG--IDLEIVFQDEHVVVVNKPAGLLSVPG-KSIKDSVY 395
Query: 62 DNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVW 121
+ +P IVHRLD +SGL+++A + +++ HL Q + ++Y+A +
Sbjct: 396 TRIKTQFP---QASGGLIVHRLDMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIE 452
Query: 122 G-IPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLK 180
G + K +G I + + +R K V + K A T+++ L + N + L
Sbjct: 453 GKLEKTSGEICLPLRGDFDDRPKQMVCHE-HGKYAETHWQ-LIEEVDNTSKLFLYPI--- 507
Query: 181 TGRTHQIRVHM---QWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHP 229
TGRTHQ+R+H L I+GD+LYG +S +R LHA +L HP
Sbjct: 508 TGRTHQLRMHCAHPDGLNLPIIGDSLYG--HSA----DRLHLHAQRLSFTHP 553
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 64/217 (29%), Positives = 109/217 (50%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL-EIYPFLINVPRAGIVHRLDKNS 87
+ I+Y+D+ I+++NK A + P + + D++L + +HRLD ++
Sbjct: 18 ITIVYQDDAIVVVNKPAEFLSVPGVH-----VHDSVLTRLKAQFTQAEGVFALHRLDMST 72
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTV 146
SGL+V A + ++ L Q VQ++Y+A++ G + + G I + + +R + V
Sbjct: 73 SGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKV 132
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHM-QWLGHG--IVGDNL 203
KPALT++E + N+ + L TGRTHQ+RVH LG IVGD+L
Sbjct: 133 CWQ-QGKPALTHWETVQVEQ-NRTRVYLYP---HTGRTHQLRVHCAHHLGLNAPIVGDDL 187
Query: 204 YGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
YG + K L LHA +L HP + ++++
Sbjct: 188 YGLQ-DKRLF-----LHAEQLSFAHPYTKQPMTFQVD 218
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 64/217 (29%), Positives = 109/217 (50%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL-EIYPFLINVPRAGIVHRLDKNS 87
+ I+Y+D+ I+++NK A + P + + D++L + +HRLD ++
Sbjct: 18 ITIVYQDDAIVVVNKPAEFLSVPGVH-----VHDSVLTRLKAQFTQAEGVFALHRLDMST 72
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTV 146
SGL+V A + ++ L Q VQ++Y+A++ G + + G I + + +R + V
Sbjct: 73 SGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKV 132
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHM-QWLGHG--IVGDNL 203
KPALT++E + N+ + L TGRTHQ+RVH LG IVGD+L
Sbjct: 133 CWQ-QGKPALTHWETVQVEQ-NRTRVYLYP---HTGRTHQLRVHCAHHLGLNAPIVGDDL 187
Query: 204 YGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRIN 240
YG + K L LHA +L HP + ++++
Sbjct: 188 YGLQ-DKRLF-----LHAEQLSFAHPYTKQPMTFQVD 218
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 202 (76.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 63/196 (32%), Positives = 105/196 (53%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP-RAGIVHRLDKNS 87
+ +++ED+E+I++NK +G+ VHPA G + F++++E+ + +A +RLD+ +
Sbjct: 152 VQVLHEDDEMIVINKPSGMPVHPA-GRYN---FNSVVEVMRSERSRDFKAYPCNRLDRLT 207
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR-NPH---NRI 142
SG+M +AK+ ++ + Q+ V+++YLA V G P + N I++ +P NR+
Sbjct: 208 SGIMFIAKTPQAACKMGEQIMGRTVRKEYLARVIGRFPDGEVICNEPILQISPKLGLNRV 267
Query: 143 KMTVSKNFNAKPALTYYE------------RLATGII--NKKHISLIRCNLKTGRTHQIR 188
+ L YY A G NK+ S++RC TGRTHQIR
Sbjct: 268 RANGRHARTVFKRLAYYPPAEGQGNEAKPGEAANGRPWRNKQGYSIVRCLPVTGRTHQIR 327
Query: 189 VHMQWLGHGIVGDNLY 204
VH+Q LGH I D +Y
Sbjct: 328 VHLQHLGHPIENDPIY 343
>DICTYBASE|DDB_G0280463 [details] [associations]
symbol:DDB_G0280463 "Ribosomal large subunit
pseudouridine synthase D" species:44689 "Dictyostelium discoideum"
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0280463 GO:GO:0003723 EMBL:AAFI02000036
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 RefSeq:XP_641190.1 ProteinModelPortal:Q54VB9
EnsemblProtists:DDB0205216 GeneID:8622571 KEGG:ddi:DDB_G0280463
InParanoid:Q54VB9 OMA:VHMASEN Uniprot:Q54VB9
Length = 746
Score = 121 (47.7 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 164 TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYK 223
T +I SL+ L TGR+HQIRVHM IVGD +Y K SK + + L +
Sbjct: 539 TKMITSNTFSLLEVTLHTGRSHQIRVHMASENIPIVGDPIYSSK-SKQFLVSYLLLASMN 597
Query: 224 LGLIHP-KNNLKLKWRINLPDDISKLIT 250
L +HP N +K ++ I P I+
Sbjct: 598 LKFVHPILNEIK-EFSIQYPSHFKNFIS 624
Score = 103 (41.3 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 16 NFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNL-SGTLFDNLLEIYPFLINV 74
NF L T+ IKLDI+YED ++ I+NK AG++VHP L S L N + L+N
Sbjct: 183 NFNLVSTD---IKLDIVYEDKDLAIINKPAGMLVHPTALTLGSNALVINKEDQTHTLVNA 239
Query: 75 PRAGIVHR 82
++HR
Sbjct: 240 ----LIHR 243
Score = 85 (35.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 40/166 (24%), Positives = 73/166 (43%)
Query: 9 IIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKS--AGLVVHPAIGNLSGTLFDNLLE 66
I+ + K +NK ++ + + +++NK +V+ I G +NL
Sbjct: 195 IVYEDKDLAIINKPAGMLVHPTALTLGSNALVINKEDQTHTLVNALIHRYGGV--ENLSS 252
Query: 67 IYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
+ V R GIVHRLDK+++G++++A++ + L + H +
Sbjct: 253 VG----GVERPGIVHRLDKDTAGMIIIARNNDVHQKLQTLFEKHTSTMITHTTIDQYED- 307
Query: 127 NGMI-NAAIMRNPHNR-IKMTVSKNFNAKPALTYYERLATGIINKK 170
NG I N I R + I +T+SK ++ + + G INKK
Sbjct: 308 NGSISNNQIERMLQGKKIPLTISKKYHC--IVLGKPKEQHGFINKK 351
Score = 82 (33.9 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 112 VQRKYLAMVWGIPK-LNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERL 162
+ +KY +V G PK +G IN I R+P ++ KM + ++ N K ALT ++ L
Sbjct: 329 ISKKYHCIVLGKPKEQHGFINKKISRHPADKNKMVIDQD-NGKEALTEFKVL 379
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 193 (73.0 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 56/199 (28%), Positives = 106/199 (53%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
++YED ++ ++K G V G ++ ++ DN ++ IN P +VHRLDK+++G+
Sbjct: 93 MLYEDENVLAISKPFGFPVQSGYG-ITASI-DNAMKS----IN-PEYRVVHRLDKHTTGV 145
Query: 91 MVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVSKN 149
++ AK++ + L +V++ YLA+V G + + G+++ I + ++ N
Sbjct: 146 LIFAKTLDAARELWRLFSNRLVKKSYLAIVIGELKEKKGVVDCYINKVLFKGEEVMQCNN 205
Query: 150 F-NAKPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207
N + A+T + +I K K+ SLI TGR HQIR M +GH ++ D YG++
Sbjct: 206 IGNGEHAITQFH-----VIKKFKNTSLIELFPLTGRKHQIRSQMASIGHPVLNDGKYGRR 260
Query: 208 --YSKSLIFNRQALHAYKL 224
+ + + + LHA ++
Sbjct: 261 KAFLEWSVNKKLCLHACEI 279
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 192 (72.6 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 59/200 (29%), Positives = 106/200 (53%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
+++ +IIY+D II +NK AG+ V +S +L D L +I P + IVHRLD
Sbjct: 72 RLVSDNIIYKDENIIAINKPAGVNVQGGT-KVSISLSDLLNKIIPG----EQLHIVHRLD 126
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIK 143
+++SG++++A+ L +L+ V+++Y+A+ G+P + G I I + + +
Sbjct: 127 RDTSGVLIIARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITMPI----YCKKQ 182
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
V + K A T + L + +K+H ++ + TGR HQ+R+H+ I+GD
Sbjct: 183 SGVGETLIPKEAKTVFSVLQS---SKRHAVMLLSPV-TGRKHQLRIHLSQFCCPIIGDTK 238
Query: 204 YGKKYSKSLIFNRQALHAYK 223
Y K ++ N LHA++
Sbjct: 239 YSKD-TEVQQHNSLHLHAFR 257
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 200 (75.5 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 56/180 (31%), Positives = 97/180 (53%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+DI++ED +I++++K + + VHP G +LE P +RLDK +S
Sbjct: 161 IDIVFEDEDILVIDKPSSIPVHPT-GRYRFNTITKMLERQLGYSVHP----CNRLDKPTS 215
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINA-AIMRNPHNRIKMTV- 146
GLM +AK+ + +Q+K V ++Y+A V G + G++ +R+ + ++ +
Sbjct: 216 GLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPI-GIVEVDKPVRSVNPKVALNAV 274
Query: 147 --SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+ NAK A T ++R++ S+++C TGRTHQIRVH+Q+LG I D +Y
Sbjct: 275 CEMSDENAKHAKTVFQRVSYD----GQTSIVKCKPLTGRTHQIRVHLQYLGFPIANDPIY 330
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 195 (73.7 bits), Expect = 6.6e-15, P = 6.6e-15
Identities = 59/179 (32%), Positives = 93/179 (51%)
Query: 32 IYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLM 91
+YED+EI++++K +G+ HP GN +++L EI +N+ HRLDK +SG++
Sbjct: 110 VYEDDEILVVDKPSGIPTHPT-GNY---YYNSLSEIIKQQLNMDSIWTCHRLDKVTSGVL 165
Query: 92 VVAKSIKSYIH---LVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
V+AK+ + L+ K H ++ YLA V G P+ I N M S
Sbjct: 166 VLAKTKNGGVRFSKLMRDSKQH-TEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLM--S 222
Query: 148 KNFNAKP--ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
N P + T +ER+ + SL++C TG+ HQIR+H++ LG IV D+ Y
Sbjct: 223 GNMEELPTDSTTIFERIKYNASLDQ--SLVKCVPITGKFHQIRIHLRNLGFPIVNDSFY 279
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 195 (73.7 bits), Expect = 6.6e-15, P = 6.6e-15
Identities = 59/179 (32%), Positives = 93/179 (51%)
Query: 32 IYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLM 91
+YED+EI++++K +G+ HP GN +++L EI +N+ HRLDK +SG++
Sbjct: 110 VYEDDEILVVDKPSGIPTHPT-GNY---YYNSLSEIIKQQLNMDSIWTCHRLDKVTSGVL 165
Query: 92 VVAKSIKSYIH---LVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
V+AK+ + L+ K H ++ YLA V G P+ I N M S
Sbjct: 166 VLAKTKNGGVRFSKLMRDSKQH-TEKTYLARVSGKFPEGIHRYRCPIFAVNMNGYLM--S 222
Query: 148 KNFNAKP--ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
N P + T +ER+ + SL++C TG+ HQIR+H++ LG IV D+ Y
Sbjct: 223 GNMEELPTDSTTIFERIKYNASLDQ--SLVKCVPITGKFHQIRIHLRNLGFPIVNDSFY 279
>UNIPROTKB|P0AA41 [details] [associations]
symbol:truC species:83333 "Escherichia coli K-12"
[GO:0006399 "tRNA metabolic process" evidence=IMP] [GO:0009451 "RNA
modification" evidence=IMP] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U29581
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0564 PIR:C65061 RefSeq:NP_417271.1 RefSeq:YP_490999.1
ProteinModelPortal:P0AA41 SMR:P0AA41
EnsemblBacteria:EBESCT00000002568 EnsemblBacteria:EBESCT00000016436
GeneID:12933253 GeneID:947242 KEGG:ecj:Y75_p2728 KEGG:eco:b2791
PATRIC:32120998 EchoBASE:EB2963 EcoGene:EG13171
HOGENOM:HOG000275920 KO:K06175 OMA:FHPIMGD ProtClustDB:PRK11112
BioCyc:EcoCyc:G7449-MONOMER BioCyc:ECOL316407:JW2762-MONOMER
BioCyc:MetaCyc:G7449-MONOMER Genevestigator:P0AA41 Uniprot:P0AA41
Length = 260
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 60/227 (26%), Positives = 107/227 (47%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L+I+Y+D ++ +NK +G +VH + + + +++ I HRLD+ +S
Sbjct: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVV--VMQTVRDQIG-QHVFTAHRLDRPTS 58
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK 148
G++++ S ++ L Q + H +Q++Y A+V G +++ ++ +
Sbjct: 59 GVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFARE 118
Query: 149 NFNAKPALTYYERLAT-------GIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGD 201
+ +PA+T+Y LAT G L+ KTGR HQ+R H+ L H I+GD
Sbjct: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178
Query: 202 NLYGK-KYSKS----LIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
+ +G + ++S R LHA +L L HP L L D
Sbjct: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDD 225
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/230 (29%), Positives = 109/230 (47%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L+I+Y+D ++ +NK AG++VH + + T F +++ I +HRLD+ +S
Sbjct: 2 LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEF--VMQTLRDQIG-QHVFPLHRLDRPTS 58
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
G++V A S + ++ H +++ Y A+V G I + N +++ +
Sbjct: 59 GVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEAN-VLDYPLKEELDKIADKFAK 117
Query: 148 KNFNAKPALTYYERLA-------TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
++ A+ A+T Y LA TG L+ KTGR HQ+R HM L H IVG
Sbjct: 118 QDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVG 177
Query: 201 DNLYGKKYSKSLI---FNRQAL--HAYKLGLIHPKNNLKLKWRINLPDDI 245
D +G L F+ Q L HA +L +HP L R L D++
Sbjct: 178 DTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGL-DEV 226
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/230 (29%), Positives = 109/230 (47%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L+I+Y+D ++ +NK AG++VH + + T F +++ I +HRLD+ +S
Sbjct: 2 LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEF--VMQTLRDQIG-QHVFPLHRLDRPTS 58
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
G++V A S + ++ H +++ Y A+V G I + N +++ +
Sbjct: 59 GVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEAN-VLDYPLKEELDKIADKFAK 117
Query: 148 KNFNAKPALTYYERLA-------TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
++ A+ A+T Y LA TG L+ KTGR HQ+R HM L H IVG
Sbjct: 118 QDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVG 177
Query: 201 DNLYGKKYSKSLI---FNRQAL--HAYKLGLIHPKNNLKLKWRINLPDDI 245
D +G L F+ Q L HA +L +HP L R L D++
Sbjct: 178 DTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGL-DEV 226
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 194 (73.4 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 59/199 (29%), Positives = 108/199 (54%)
Query: 14 KKNFFLNKT----EKKVIK--LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
K N FL T E V + I+ E++E+++++K + L VHP G + ++ I
Sbjct: 113 KNNDFLRNTVHRHEPPVTAQPIQILVENDEVVVVDKPSSLPVHPC-GRFR---HNTVIFI 168
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKL 126
N+ +HRLD+ +SG+++ AK+++ + Q++ ++++Y+ V G P+
Sbjct: 169 LGKEHNLKELHTIHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVGEFPEH 228
Query: 127 NGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185
+ I+ + K+ V + + K T ++RL+ N K S+++C +TGRTH
Sbjct: 229 EVVCEEPILVVSY---KVGVCRVDPKGKCCKTIFQRLS---YNGKS-SVVKCLPRTGRTH 281
Query: 186 QIRVHMQWLGHGIVGDNLY 204
QIRVH+Q+LG+ IV D +Y
Sbjct: 282 QIRVHLQYLGYPIVNDPIY 300
>POMBASE|SPAC18B11.02c [details] [associations]
symbol:SPAC18B11.02c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=ISO] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PomBase:SPAC18B11.02c GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 KO:K15454 OrthoDB:EOG4BK8C8
PIR:T37912 RefSeq:NP_592881.1 ProteinModelPortal:Q09709
STRING:Q09709 EnsemblFungi:SPAC18B11.02c.1 GeneID:2542607
KEGG:spo:SPAC18B11.02c OMA:YRKNTVV NextBio:20803656 Uniprot:Q09709
Length = 394
Score = 190 (71.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 57/184 (30%), Positives = 97/184 (52%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
I++ED ++++K AG+ VHP T+ L++ + P +RLD+ +SGL
Sbjct: 107 IVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKENKCSLLYP----CNRLDRLTSGL 162
Query: 91 MVVAKSIKSYIHLVNQLKMHIV----QRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
M +KS K+ ++++H++ +++Y+A V G +G + I P + T+
Sbjct: 163 MFFSKSPKA----AEEMRVHMISKSLKKEYVARVIGEFPNSGEV---ICDAPLLTVAPTL 215
Query: 147 SKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
N + K A T ++R+A H SL+ C TGRTHQ+RVH+Q+LG+ I D +
Sbjct: 216 GLNRIHPDGKEASTVFKRIAFD----GHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDPI 271
Query: 204 YGKK 207
Y K
Sbjct: 272 YANK 275
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 188 (71.2 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 66/205 (32%), Positives = 96/205 (46%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA-GI--VHRLDK 85
L I+Y+ N+ +++NK L + + TL L +P L + G H+LD
Sbjct: 9 LSIVYQSNDFLVVNKHWDLRIDSKTWRETLTLQKQLRHHFPELADPDTCYGFRFCHQLDF 68
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP-HNRIK 143
++SG + VA + + K V + YLA+V G + + IN AI RN R
Sbjct: 69 STSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEGRTH 128
Query: 144 -MTVSKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M + N KP+LT L G+ + +S + TGRTHQ+RVH LGH IV
Sbjct: 129 TMCIEGTHGCENPKPSLTELLVLEHGLYSGDPVSKVLLKPLTGRTHQLRVHCSALGHPIV 188
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKL 224
GD YG+ + R LHA+ L
Sbjct: 189 GDLTYGQADDQEDQPFRMMLHAFYL 213
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 193 (73.0 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 53/180 (29%), Positives = 96/180 (53%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+ I++ D +I+++NK A + VHP T+ L + + N+ +HRLD+ +S
Sbjct: 377 IKIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEF----NLKNLRTIHRLDRLTS 432
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRI--KMT 145
GL++ +S K + Q++ V+++Y+ V G+ P +G++ + P + K+
Sbjct: 433 GLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGVFP--DGIVEC---KEPIEVVSYKIG 487
Query: 146 VSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V K + K T +++L+ S++ C TGR HQIRVH+Q+LG+ I+ D LY
Sbjct: 488 VCKVSAKGKDCTTTFQKLS----QNGTTSVVLCKPLTGRMHQIRVHLQYLGYPILNDPLY 543
>TIGR_CMR|CPS_4080 [details] [associations]
symbol:CPS_4080 "pseudouridine synthase Rlu family
protein, TIGR01621" species:167879 "Colwellia psychrerythraea 34H"
[GO:0001522 "pseudouridine synthesis" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_270735.1 STRING:Q47WT7 GeneID:3519849 KEGG:cps:CPS_4080
PATRIC:21471031 HOGENOM:HOG000275915 OMA:GWVIGDM
BioCyc:CPSY167879:GI48-4093-MONOMER InterPro:IPR006508
TIGRFAMs:TIGR01621 Uniprot:Q47WT7
Length = 230
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 62/195 (31%), Positives = 103/195 (52%)
Query: 32 IYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLM 91
I E ++ I+++K AG+ H G++ LF + + N VHRLDK +SGL+
Sbjct: 5 IAEHHDFIVVDKEAGVNFHDE-GDIGSGLFSLVKKQLQSQNNNTELYPVHRLDKMTSGLV 63
Query: 92 VVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVSKN 149
V AK++ + + QL H +++ YLA+ P K G+I + ++ K+ S
Sbjct: 64 VFAKTL-ACAQIFGQLFNDHDIEKYYLAIGDKKPIKKQGLIKGDMAKSRRGMFKLLRSME 122
Query: 150 FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS 209
PA+T + + I NK+ + L++ + +G+THQ+RV + +G IVGD LY Y+
Sbjct: 123 ---NPAVTQF--FSFSIPNKQRLYLLKPH--SGKTHQLRVALASIGAPIVGDPLY---YT 172
Query: 210 KSLIFNRQALHAYKL 224
S +R LHA+ L
Sbjct: 173 TSQA-DRGYLHAFVL 186
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 129 (50.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 45/145 (31%), Positives = 71/145 (48%)
Query: 112 VQRKYLAMVWGIPK-LNGMINAAIMR---NPHNRIKMTVSKNFNAKPALTYYERLATGII 167
+++ Y A++ P G I A + + ++ T++ AK A+T Y+ L + +
Sbjct: 559 IKKTYWALLGSTPTPKEGRIRAPLKKVVVGGFEKVVPTLTTGDGAKIAITEYKVLESSLT 618
Query: 168 NKKHISLIRCNLKTGRTHQIRVHM-QWLGHGIVGDNLYGKKYSKS-----LIF-NRQALH 220
ISL +TGRTHQ+RVH L I+GD YG K S S L + ++ LH
Sbjct: 619 KHCFISLWP---ETGRTHQLRVHCASVLNTPIIGDPKYGDKESDSNLKDLLPYPSKLHLH 675
Query: 221 AYKLGLIHPKNNLKLKWRINLPDDI 245
A ++ IHP N K+ LP ++
Sbjct: 676 ARRIEFIHPFTNKKIDISAPLPREL 700
Score = 121 (47.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 36/114 (31%), Positives = 65/114 (57%)
Query: 2 IISGYELIIIK-PKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTL 60
+I ++ IK P+K L+ E K I+ ++Y+D II+LNK GL V G L+ L
Sbjct: 400 VILDQQIADIKDPQKYARLSDQEIKEIRESVLYKDEHIIVLNKPQGLSVQGGTG-LNKHL 458
Query: 61 FDNLLEIYPFLINV-PRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113
D +L F + P+ +VHRLD+N+SG++++ +S + + + ++ +V+
Sbjct: 459 -DMMLSHLRFEKDENPK--LVHRLDRNTSGILILGRSKLAASAMTKKFELKLVK 509
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 138 (53.6 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 38/137 (27%), Positives = 70/137 (51%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGI--VHR 82
K ++ +Y+D E+++LNK GL VH G + + D L + L+N+ + HR
Sbjct: 82 KALRQRAVYQDEEVVVLNKPYGLPVHGGPG-VKNCIADVLPILAKMLVNMKAEPLHLCHR 140
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNP--- 138
LDK ++G+MV+A++ ++ + K V++ Y A+ G P G++ ++
Sbjct: 141 LDKETTGVMVLARNKEAADRIRLLFKTRQVEKIYWAISVGSPDPAEGIVEIPMVEREVQS 200
Query: 139 HN-RIKMTVSKNFNAKP 154
H KMT++ N+ P
Sbjct: 201 HQPHFKMTLAPNYRMSP 217
Score = 92 (37.4 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 137 NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW-LG 195
+P + + + KN NA+ A+T Y LA+ SL+ TG HQ+RVH+ + LG
Sbjct: 216 SPEDGKVLKIRKNRNAESAVTQYRVLASS----SACSLLELQPITGVKHQLRVHLAYGLG 271
Query: 196 HGIVGDNLYGKKYSK 210
I+GD+ Y +SK
Sbjct: 272 CPILGDHKYSH-WSK 285
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 181 (68.8 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 65/205 (31%), Positives = 95/205 (46%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA-GI--VHRLDK 85
L I+Y+ ++ +++NK L + + TL L +P L + G H+LD
Sbjct: 9 LSIVYQSSDFLVVNKHWDLRIDSKTWRETLTLQKQLRHHFPELADPDTCYGFRFCHQLDF 68
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP-HNRIK 143
++SG + VA + + K V + YLA+V G + + IN AI RN R
Sbjct: 69 STSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEGRTH 128
Query: 144 -MTVSKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
M + N KP+LT L G+ +S + TGRTHQ+RVH LGH IV
Sbjct: 129 TMCIEGTHGCENPKPSLTELLVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPIV 188
Query: 200 GDNLYGKKYSKSLIFNRQALHAYKL 224
GD YG+ + R LHA+ L
Sbjct: 189 GDLTYGQAEDQEDQPFRMMLHAFYL 213
>TIGR_CMR|CJE_0808 [details] [associations]
symbol:CJE_0808 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
RefSeq:YP_178812.1 ProteinModelPortal:Q5HV73 STRING:Q5HV73
GeneID:3230758 KEGG:cjr:CJE0808 PATRIC:20043361
HOGENOM:HOG000275921 OMA:YITSEEI ProtClustDB:CLSK872473
BioCyc:CJEJ195099:GJC0-823-MONOMER Uniprot:Q5HV73
Length = 250
Score = 163 (62.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 47/150 (31%), Positives = 85/150 (56%)
Query: 77 AGIVHRLDKNSSGLMVVAKSIKSYIHL-VNQLKMHIVQRKYLAMVWGIPKLNGMINAAIM 135
A +++RLDK +SG++++ K + + L + + K H V + Y+A++ G+ +N I
Sbjct: 86 AKLLNRLDKETSGVILLCKD-EDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIF 144
Query: 136 R-NPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194
VSK+ AL+ + T I+ + +L + ++TGRTHQIRVH +++
Sbjct: 145 TIKAKGGALSKVSKD--GLSALS----IITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFI 198
Query: 195 GHGIVGDNLYGKKYSKSLIFNRQALHAYKL 224
HG+VGD +KY+K + +R LH+Y++
Sbjct: 199 KHGVVGD----EKYAK-ISSDRMYLHSYEI 223
Score = 46 (21.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 NKTEKKVIKL---DIIYEDNEIIILNK 43
+K VIK II+ED++II +NK
Sbjct: 45 DKARFNVIKAKNPQIIFEDDKIIAINK 71
>DICTYBASE|DDB_G0271796 [details] [associations]
symbol:DDB_G0271796 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 dictyBase:DDB_G0271796 GO:GO:0003723
EMBL:AAFI02000006 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 RefSeq:XP_645472.1 ProteinModelPortal:Q55AQ0
EnsemblProtists:DDB0304384 GeneID:8618100 KEGG:ddi:DDB_G0271796
OMA:RIDYATS Uniprot:Q55AQ0
Length = 316
Score = 132 (51.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 145 TVSKNFN-AKPALTYYERLATGII---NKKHISLIRCNL--KTGRTHQIRVHMQWLGHGI 198
T+ N AK + T Y+ L G + N ++I + + L KTGR HQ+RVH+ +GH I
Sbjct: 202 TIKNKSNPAKASQTSYKVLERGYLKINNDEYIPITKVMLFPKTGRRHQLRVHLLSIGHVI 261
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKL 224
VGD YG K S +R LH++KL
Sbjct: 262 VGDETYGPKDST---IHRMMLHSWKL 284
Score = 94 (38.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 28 KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNS 87
K + IY D E I++NK + + G T+ + YP R V+R+D +
Sbjct: 20 KYETIYLDKEYIVVNKPFDVNIDDETGERLTTVVKYIETEYPEHFGNVR--FVNRIDYAT 77
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIM--RNPHNRIKM 144
SGL+VV+ + KS + + + YLA+V G + + +I+ I + N KM
Sbjct: 78 SGLVVVSFNKKSTTVAMELFQSRETSKTYLAIVHGHMEFDESIIDKPIQYDTSDENSFKM 137
Query: 145 TVSKNFN 151
V ++ N
Sbjct: 138 CVVEDIN 144
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 183 (69.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 54/178 (30%), Positives = 94/178 (52%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+ I+Y D +I+++NK A + VHP T+ L + + N+ +HRLD+ +S
Sbjct: 216 IKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFILAKEH----NLKNLRTIHRLDRLTS 271
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
GL++ ++ + L Q++ VQ++Y+ V G P +G++ + + K+ V
Sbjct: 272 GLLLFGRTAEKARELELQIRTRQVQKEYVCRVEGRFP--DGIVECNEKIDVVS-YKIGVC 328
Query: 148 K-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
K + K T ++R+ G + S++ C TGR HQIRVH+Q+LG+ I D LY
Sbjct: 329 KVSPKGKDCKTTFKRI--GEVGSD--SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLY 382
>DICTYBASE|DDB_G0281097 [details] [associations]
symbol:DDB_G0281097 "pseudouridine synthase family
protein" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
dictyBase:DDB_G0281097 EMBL:AAFI02000040 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 KO:K15454 RefSeq:XP_640817.1
ProteinModelPortal:Q54UF9 STRING:Q54UF9 EnsemblProtists:DDB0238343
GeneID:8622871 KEGG:ddi:DDB_G0281097 OMA:FAKERWF Uniprot:Q54UF9
Length = 578
Score = 128 (50.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 153 KPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS 211
KP++T+ + + + S++ C KTGRTHQIRVH++WLG I D LY ++ +S
Sbjct: 382 KPSITHIKLFSYD--QSTNTSIVLCTPKTGRTHQIRVHLKWLGFPIANDPLYNNEFKES 438
Score = 105 (42.0 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 27/94 (28%), Positives = 53/94 (56%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+ I+ D +++++K + + VHP G ++L+ I + + VHRLD+ +S
Sbjct: 240 IKIVSLDENVVVVDKPSSIPVHPC-GRFR---HNSLMYILASEHGINQLYGVHRLDRLTS 295
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
GL+++A++ S NQ++ +V ++YLA V G
Sbjct: 296 GLLLLARTPDSANKKANQIQSGLVSKQYLAKVIG 329
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 176 (67.0 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 64/209 (30%), Positives = 97/209 (46%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA-GI--VH 81
+V L ++Y+ + +++NK L + + + TL L +P L + G H
Sbjct: 5 RVENLSVVYQSRDFLVVNKHWDLRIDSRMWRETPTLQKQLRHHFPELADPDTYYGFRFCH 64
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM-INAAIMRNP-H 139
+LD ++SG + VA + + K V + YLA+V G + + M IN AI RN
Sbjct: 65 QLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESRMTINYAIGRNSTE 124
Query: 140 NRIK-MTVSKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
R M + N KP+LT L G+ +S + TGRTHQ+RVH L
Sbjct: 125 GRAHTMCIEGTEGCENPKPSLTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCSALS 184
Query: 196 HGIVGDNLYGKKYSKSLIFNRQALHAYKL 224
H +VGD YG+ + R LHA+ L
Sbjct: 185 HPVVGDLTYGQASDQEDQPFRMMLHAFYL 213
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 177 (67.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 60/212 (28%), Positives = 109/212 (51%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLD 84
++ +I++ED I++++K +G+ VHP G LL+++ + +P +RLD
Sbjct: 115 RIAGFNIVFEDESILVIDKPSGIPVHPT-GQFYQNTITELLKLHG-VDALP----CYRLD 168
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMI---NAAIMR-NPH 139
K +SGL+++AK+ +S + ++ + + YLA V G P ++ NAA
Sbjct: 169 KITSGLLILAKNSQSAGEIQKSIRSRDMIKIYLARVKGRFPHSELILDNENAAETTFEDT 228
Query: 140 NRIKMTVSKNFNAKPALTYYERLATG--IINK----KHIS-----LIRCNLKTGRTHQIR 188
+++ + ++ ++ P + L+T I K ++ S ++ C TGRTHQIR
Sbjct: 229 SKVTVEMTPIYSIDPKRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIR 288
Query: 189 VHMQWLGHGIVGDNLYGK---KYSKSLIFNRQ 217
+H+ LGH IV D++Y KY + L F Q
Sbjct: 289 IHLARLGHPIVNDSVYCSHITKYPERLKFITQ 320
>MGI|MGI:1918066 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain
containing 2" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1918066 GO:GO:0003723
EMBL:AL772264 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 HOGENOM:HOG000167783
GeneTree:ENSGT00420000029802 CTD:27079 HOVERGEN:HBG103625
OMA:HLNEEPV OrthoDB:EOG4DV5KW EMBL:AK044767 EMBL:BC117827
EMBL:BC117828 IPI:IPI00120035 RefSeq:NP_775626.1 UniGene:Mm.33617
ProteinModelPortal:Q149F1 SMR:Q149F1 STRING:Q149F1
PhosphoSite:Q149F1 PRIDE:Q149F1 Ensembl:ENSMUST00000028796
GeneID:271842 KEGG:mmu:271842 UCSC:uc008lsz.2 InParanoid:Q149F1
NextBio:393510 Bgee:Q149F1 CleanEx:MM_RPUSD2 Genevestigator:Q149F1
Uniprot:Q149F1
Length = 553
Score = 178 (67.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 58/201 (28%), Positives = 106/201 (52%)
Query: 14 KKNFFLNKT----EKKVIK--LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
K N FL T E V + ++ E+N++++++K + + VHP G + ++ I
Sbjct: 215 KDNDFLRNTVHRHEPPVTAEPIHLLAENNDVVVIDKPSSIPVHPC-GRFR---HNTVIFI 270
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKS--IKSYIHLVNQLKMHIVQRKYLAMVWG-IP 124
+ +HRLD+ +SG+++ AK+ + IH Q++ ++++Y+ V G P
Sbjct: 271 LGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIH--EQVRDRQLEKEYVCRVAGEFP 328
Query: 125 KLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
+ I+ + K+ V + + KP T ++RL+ N + S+++C TGR
Sbjct: 329 DKEVICKEPILVVSY---KVGVCRVDPRGKPCETVFQRLS---YNGRS-SVVQCRPLTGR 381
Query: 184 THQIRVHMQWLGHGIVGDNLY 204
THQIRVH+Q+LGH I+ D +Y
Sbjct: 382 THQIRVHLQFLGHPILNDPIY 402
>UNIPROTKB|F1PK69 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AAEX03016068
Ensembl:ENSCAFT00000014582 Uniprot:F1PK69
Length = 552
Score = 177 (67.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 51/178 (28%), Positives = 95/178 (53%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
++ E+ ++++++K + + VHP G + ++ I + +HRLD+ +SG+
Sbjct: 232 LLAENEDVVVVDKPSSIPVHPC-GRFR---HNTVIFILGKEHQLKELHPLHRLDRLTSGV 287
Query: 91 MVVAKS--IKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
++ AK+ + IH Q++ ++++Y+ V G P I+ + K+ V
Sbjct: 288 LMFAKTAAVSERIH--EQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSY---KVGVC 342
Query: 148 K-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+ + KP T ++RL+ H S++RC TGRTHQIRVH+Q+LGH I+ D +Y
Sbjct: 343 RVDTRGKPCETVFQRLSYN----GHSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIY 396
>UNIPROTKB|Q9KRH4 [details] [associations]
symbol:VC1668 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 163 (62.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 57/196 (29%), Positives = 96/196 (48%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSG 89
DI++ + +++NK + VH G+ T+ LL+ + +VHRLDK +SG
Sbjct: 3 DILFTHPDFLLINKHPNVSVHKDDGD---TM---LLQEVATQTGDGQLYLVHRLDKMTSG 56
Query: 90 LMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVSK 148
++++A++ + L V++ YLA+ PK G+I + R+ + K+
Sbjct: 57 ILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWKLV--- 113
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY 208
N PA+T + A + L C TG+THQIRV ++ +G IVGD +Y
Sbjct: 114 NSQENPAITQFFSAAAATGER----LFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTA- 168
Query: 209 SKSLIFNRQALHAYKL 224
+S +R LHA+ L
Sbjct: 169 DES---DRGYLHAFAL 181
>TIGR_CMR|VC_1668 [details] [associations]
symbol:VC_1668 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 163 (62.4 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 57/196 (29%), Positives = 96/196 (48%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSG 89
DI++ + +++NK + VH G+ T+ LL+ + +VHRLDK +SG
Sbjct: 3 DILFTHPDFLLINKHPNVSVHKDDGD---TM---LLQEVATQTGDGQLYLVHRLDKMTSG 56
Query: 90 LMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVSK 148
++++A++ + L V++ YLA+ PK G+I + R+ + K+
Sbjct: 57 ILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERSRRSSWKLV--- 113
Query: 149 NFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY 208
N PA+T + A + L C TG+THQIRV ++ +G IVGD +Y
Sbjct: 114 NSQENPAITQFFSAAAATGER----LFLCKPHTGKTHQIRVALKSIGSAIVGDPIYNTA- 168
Query: 209 SKSLIFNRQALHAYKL 224
+S +R LHA+ L
Sbjct: 169 DES---DRGYLHAFAL 181
>UNIPROTKB|F1N088 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:DAAA02028551 IPI:IPI01002170 Ensembl:ENSBTAT00000004148
Uniprot:F1N088
Length = 552
Score = 172 (65.6 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 57/201 (28%), Positives = 103/201 (51%)
Query: 14 KKNFFLNKT----EKKVIK--LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
K N FL T E V + ++ E+ ++++++K + + VHP G + ++ I
Sbjct: 209 KDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPC-GRFR---HNTVIFI 264
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKS--IKSYIHLVNQLKMHIVQRKYLAMVWG-IP 124
+ +HRLD+ +SG+++ AK+ + IH Q++ ++++Y+ V G P
Sbjct: 265 LGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIH--EQVRDRQLEKEYVCRVVGEFP 322
Query: 125 KLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
I+ + K+ V + + KP + ++RL+ H S++RC TGR
Sbjct: 323 TEEVTCKEPILVVSY---KVGVCRVDPQGKPCESVFQRLSYN----GHSSVVRCRPLTGR 375
Query: 184 THQIRVHMQWLGHGIVGDNLY 204
THQIRVH+Q+LGH I+ D +Y
Sbjct: 376 THQIRVHLQFLGHPILNDPIY 396
>RGD|1306147 [details] [associations]
symbol:Rpusd2 "RNA pseudouridylate synthase domain containing 2"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
RGD:1306147 GO:GO:0003723 EMBL:CH473949 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
CTD:27079 OMA:HLNEEPV OrthoDB:EOG4DV5KW IPI:IPI00914730
RefSeq:NP_001129317.1 RefSeq:XP_003749602.1 UniGene:Rn.23750
Ensembl:ENSRNOT00000014129 GeneID:100911166 GeneID:311326
KEGG:rno:100911166 KEGG:rno:311326 UCSC:RGD:1306147 NextBio:663325
Uniprot:D4ACD4
Length = 553
Score = 172 (65.6 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 57/201 (28%), Positives = 106/201 (52%)
Query: 14 KKNFFLNKT----EKKVIK--LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
K N FL T E V + ++ E++++++++K + + VHP G + ++ I
Sbjct: 215 KDNDFLRNTVHRHEPPVTAEPIRLLAENDDVVVIDKPSSIPVHPC-GRFR---HNTVIFI 270
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKS--IKSYIHLVNQLKMHIVQRKYLAMVWG-IP 124
+ +HRLD+ +SG+++ AK+ + IH Q++ ++++Y+ V G P
Sbjct: 271 LGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSEKIH--EQVRDRQLEKEYVCRVAGEFP 328
Query: 125 KLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
+ I+ + K+ V + + KP T ++RL+ N + S+++C TGR
Sbjct: 329 DKEVICKEPILVVSY---KVGVCRVDPQGKPCETVFQRLS---YNGRS-SVVQCRPLTGR 381
Query: 184 THQIRVHMQWLGHGIVGDNLY 204
THQIRVH+Q+LGH I+ D +Y
Sbjct: 382 THQIRVHLQFLGHPILNDPIY 402
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 167 (63.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 63/208 (30%), Positives = 95/208 (45%)
Query: 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA-GI--VHR 82
V L ++Y ++ +++NK + + + TL L +P L + G H+
Sbjct: 6 VENLCVVYRSHDFLVVNKHWDVRIDSKAWRETLTLQKQLRHRFPELADPDTCYGFRFCHQ 65
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP-HN 140
LD ++SG + VA + + K V + YLA+V G I + I+ AI +N
Sbjct: 66 LDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHIQESRVTISYAIGKNSTEG 125
Query: 141 RIK-MTVSKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M + N KP+LT L G+ +S + TGRTHQ+RVH LGH
Sbjct: 126 RTHTMCIEGTQGCENPKPSLTELVVLEHGLYGGDPVSKVLLQPLTGRTHQLRVHCSALGH 185
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKL 224
IVGD YG+ + R LHA+ L
Sbjct: 186 PIVGDLTYGQASGREDQPFRMMLHAFYL 213
>UNIPROTKB|B4DDD1 [details] [associations]
symbol:RPUSD2 "cDNA FLJ57803, highly similar to Homo
sapiens RNA pseudouridylate synthase domain containing 2 (RPUSD2),
mRNA" species:9606 "Homo sapiens" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 UniGene:Hs.173311 HGNC:HGNC:24180
HOVERGEN:HBG103625 EMBL:AC091045 EMBL:AK293145 IPI:IPI00908891
SMR:B4DDD1 STRING:B4DDD1 Ensembl:ENST00000559271 UCSC:uc021sjh.1
Uniprot:B4DDD1
Length = 484
Score = 170 (64.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 58/201 (28%), Positives = 104/201 (51%)
Query: 14 KKNFFLNKT----EKKVIK--LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
K N FL T E V + ++ E+ ++++++K + + VHP G + ++ I
Sbjct: 141 KDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPC-GRFR---HNTVIFI 196
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKS--IKSYIHLVNQLKMHIVQRKYLAMVWG-IP 124
+ +HRLD+ +SG+++ AK+ + IH Q++ ++++Y+ V G P
Sbjct: 197 LGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIH--EQVRDRQLEKEYVCRVEGEFP 254
Query: 125 KLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
I+ + K+ V + + KP T ++RL+ N + S++RC TGR
Sbjct: 255 TEEVTCKEPILVVSY---KVGVCRVDPRGKPCETVFQRLS---YNGQS-SVVRCRPLTGR 307
Query: 184 THQIRVHMQWLGHGIVGDNLY 204
THQIRVH+Q+LGH I+ D +Y
Sbjct: 308 THQIRVHLQFLGHPILNDPIY 328
>UNIPROTKB|Q8IZ73 [details] [associations]
symbol:RPUSD2 "RNA pseudouridylate synthase
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 EMBL:AK055971 EMBL:BC007697
EMBL:BC016967 EMBL:U67934 IPI:IPI00150963 RefSeq:NP_689473.1
UniGene:Hs.173311 ProteinModelPortal:Q8IZ73 SMR:Q8IZ73
IntAct:Q8IZ73 STRING:Q8IZ73 PhosphoSite:Q8IZ73 DMDM:158563848
PaxDb:Q8IZ73 PeptideAtlas:Q8IZ73 PRIDE:Q8IZ73
Ensembl:ENST00000315616 GeneID:27079 KEGG:hsa:27079 UCSC:uc001zmd.1
CTD:27079 GeneCards:GC15P040861 HGNC:HGNC:24180 HPA:HPA042079
HPA:HPA042194 neXtProt:NX_Q8IZ73 PharmGKB:PA134866412
HOVERGEN:HBG103625 InParanoid:Q8IZ73 OMA:HLNEEPV OrthoDB:EOG4DV5KW
PhylomeDB:Q8IZ73 GenomeRNAi:27079 NextBio:49685 ArrayExpress:Q8IZ73
Bgee:Q8IZ73 CleanEx:HS_RPUSD2 Genevestigator:Q8IZ73 Uniprot:Q8IZ73
Length = 545
Score = 170 (64.9 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 58/201 (28%), Positives = 104/201 (51%)
Query: 14 KKNFFLNKT----EKKVIK--LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
K N FL T E V + ++ E+ ++++++K + + VHP G + ++ I
Sbjct: 202 KDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPC-GRFR---HNTVIFI 257
Query: 68 YPFLINVPRAGIVHRLDKNSSGLMVVAKS--IKSYIHLVNQLKMHIVQRKYLAMVWG-IP 124
+ +HRLD+ +SG+++ AK+ + IH Q++ ++++Y+ V G P
Sbjct: 258 LGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIH--EQVRDRQLEKEYVCRVEGEFP 315
Query: 125 KLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
I+ + K+ V + + KP T ++RL+ N + S++RC TGR
Sbjct: 316 TEEVTCKEPILVVSY---KVGVCRVDPRGKPCETVFQRLS---YNGQS-SVVRCRPLTGR 368
Query: 184 THQIRVHMQWLGHGIVGDNLY 204
THQIRVH+Q+LGH I+ D +Y
Sbjct: 369 THQIRVHLQFLGHPILNDPIY 389
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 165 (63.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 63/208 (30%), Positives = 95/208 (45%)
Query: 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA-GI--VHR 82
V L I+Y + +++NK + + + TL L +P L + G H+
Sbjct: 6 VENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQ 65
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNR 141
LD ++SG + VA + + K V + YLA++ G I + I+ AI RN
Sbjct: 66 LDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNSTEG 125
Query: 142 IKMTV----SKNF-NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
T+ S+ N KP+LT L G+ +S + TGRTHQ+RVH LGH
Sbjct: 126 RAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGH 185
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKL 224
+VGD YG+ + R LHA+ L
Sbjct: 186 PVVGDLTYGEVSGREDRPFRMMLHAFYL 213
>TAIR|locus:2824464 [details] [associations]
symbol:AT1G56345 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 EMBL:AC058785 EMBL:AC069159
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 EMBL:BT010200 EMBL:AK228224 IPI:IPI00531084
PIR:D96605 RefSeq:NP_176031.2 UniGene:At.45959
ProteinModelPortal:Q7XA65 SMR:Q7XA65 IntAct:Q7XA65 STRING:Q7XA65
EnsemblPlants:AT1G56345.1 GeneID:842088 KEGG:ath:AT1G56345
TAIR:At1g56345 HOGENOM:HOG000275917 InParanoid:Q7XA65 OMA:GAWRVYA
PhylomeDB:Q7XA65 ProtClustDB:CLSN2680513 Genevestigator:Q7XA65
Uniprot:Q7XA65
Length = 322
Score = 107 (42.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 172 ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS-KSLIFNRQALHAYKLGLIHPK 230
+ ++R ++GRTHQIR+H Q+LG I GD Y Y F LHA L L HP
Sbjct: 245 VVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPV 304
Query: 231 NNLKLKWRINLP 242
+ R LP
Sbjct: 305 TGDSIVIRAPLP 316
Score = 104 (41.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSG 89
DI+YED ++ +NK G+ + + + D+ E + + +RLD+++SG
Sbjct: 76 DILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSEYH----------LANRLDRDTSG 125
Query: 90 LMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG 122
+M++ KS K LV H +++ Y+A+ G
Sbjct: 126 VMIITKSHKVAAKLVKAFTEHKIRKSYIALCIG 158
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 164 (62.8 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 63/225 (28%), Positives = 101/225 (44%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA--GI--VHRLD 84
L ++Y+ I++NK + + + T+ L +P L + P G H+LD
Sbjct: 9 LSVLYQSTNYIVVNKHWDIRIDSKMWYEKQTVQSQLKHHFPELAD-PGTYYGFRFCHQLD 67
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP-HNRI 142
++SG + VA + + K V + YLA+V G + + N ++ AI +N +
Sbjct: 68 FSTSGALCVALNKAAAGQAYRCFKDRRVTKAYLALVRGTVTEENLSLDFAIGKNTTEGKT 127
Query: 143 KMTVSKNF----NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
M ++ N KP T L G + ++ + TGRTHQ+RVH +GH I
Sbjct: 128 HMMCTEGTEGCENPKPCQTEVTVLEYGTYDGDQVTKVLLQPLTGRTHQLRVHCSAIGHPI 187
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243
VGD Y + S R LHAY L + P +N + + PD
Sbjct: 188 VGDYTYSLRTDNSPY--RMMLHAYFLHI--PLHNEPI--HVTAPD 226
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 160 (61.4 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 63/208 (30%), Positives = 95/208 (45%)
Query: 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRA-GI--VHR 82
V L ++Y ++ +++NK + + + TL L +P L + G H+
Sbjct: 6 VENLCVVYRSHDFLVVNKHWDVRIDSKAWRETLTLQKQLRHRFPELADPDTYYGFRFCHQ 65
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM-INAAIMRNP-HN 140
LD ++SG + VA + + K V + YLA+V G + + M I+ AI +N
Sbjct: 66 LDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHVQESRMTISYAIGKNSTEG 125
Query: 141 RIK-MTVSKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
R M + N KP+LT L G+ +S + TGRTHQ+RVH LGH
Sbjct: 126 RTHTMCIEGTQGCENPKPSLTELVVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCSALGH 185
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYKL 224
IVGD YG + R LHA+ L
Sbjct: 186 PIVGDLTYGHALGQEDQPFRMMLHAFYL 213
>WB|WBGene00019498 [details] [associations]
symbol:K07E8.7 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:FO081602 PIR:T32044 RefSeq:NP_493778.1
ProteinModelPortal:O16686 SMR:O16686 STRING:O16686 PaxDb:O16686
EnsemblMetazoa:K07E8.7 GeneID:173456 KEGG:cel:CELE_K07E8.7
UCSC:K07E8.7 CTD:173456 WormBase:K07E8.7 HOGENOM:HOG000155606
InParanoid:O16686 NextBio:879741 Uniprot:O16686
Length = 432
Score = 159 (61.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 51/182 (28%), Positives = 91/182 (50%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG--IVHRLD 84
+ + +I E +++ ++ K L VH T+ L +N R G ++HRLD
Sbjct: 146 LPIRVISETDDLFVVEKPPSLPVHTCGQYAIHTVLGQLR------VNEGRTGLRVLHRLD 199
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRIK 143
+ +SG+++ AK+ ++ + LK ++Y+ V G+ P + I P I
Sbjct: 200 RATSGVLLFAKNYETDLEFKTTLKQGEWSKEYICKVDGVFPDEEQVCEQPI--GPLV-IS 256
Query: 144 MTVS-KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M + + K A + + +L + S+++ +++TGRTHQIRVH Q+LGH I GD
Sbjct: 257 MGIQCVRPDGKDAKSRFRKLWSDGTQ----SVVQVHIETGRTHQIRVHSQFLGHPIAGDQ 312
Query: 203 LY 204
+Y
Sbjct: 313 IY 314
>TIGR_CMR|CPS_3649 [details] [associations]
symbol:CPS_3649 "tRNA pseudouridine synthase C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 HOGENOM:HOG000275920
KO:K06175 RefSeq:YP_270317.1 ProteinModelPortal:Q47Y03
STRING:Q47Y03 GeneID:3523321 KEGG:cps:CPS_3649 PATRIC:21470223
OMA:EIANAVC BioCyc:CPSY167879:GI48-3671-MONOMER Uniprot:Q47Y03
Length = 304
Score = 116 (45.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 146 VSKNFNAKPALTYYE-------RLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
VS++ A+ A +YY+ + G + SLI TGR HQIR H+ L H I
Sbjct: 181 VSRDKPAQSAQSYYQVKQQASLPIKVGKFDSVRYSLIEVRPITGRRHQIRRHLAHLRHPI 240
Query: 199 VGDNLYG-KKYSKSLI----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSG 253
+GD YG K + I F R L A L HP NN ++K I+ P D F+
Sbjct: 241 LGDINYGDNKQNPFFIEHFGFKRLMLIAKSLEFNHPINNDRIK--ISAPFDEQWQQVFTT 298
Query: 254 IKW 256
+W
Sbjct: 299 FEW 301
Score = 79 (32.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
EK V LDI+Y+D ++ ++K AGL VH + + F L++ + VHR
Sbjct: 17 EKPV--LDILYQDEYMVAVDKPAGLFVHRSYMDKDEIYF--ALQLVRDQVG-QYVYPVHR 71
Query: 83 LDKNSSGLMVVA 94
LD+ +SG+++ A
Sbjct: 72 LDRPTSGVLLFA 83
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 136 (52.9 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 38/138 (27%), Positives = 73/138 (52%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVP---RAG--- 78
K + +YED II +NK + +H N++G + +++ E P L + R G
Sbjct: 85 KALYRSSLYEDQNIIAINKPYDVPLH----NING-IRNSIAECLPLLAKITDNMRPGSQL 139
Query: 79 -IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMR 136
+ H+L+K ++G++++AK+ ++ H+ ++ H V+ KYLA+ G+P G+I+ ++
Sbjct: 140 HLCHKLEKETTGVLILAKTEEAAEHVQTLIQSHKVEMKYLAITVGVPVPSEGVIDIPVIE 199
Query: 137 N----PHNRIKMTVSKNF 150
P KM +S F
Sbjct: 200 RAVVGPQPHFKMALSPLF 217
Score = 57 (25.1 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 152 AKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW-LGHGIVGDNLYGKKYSK 210
A A+T Y+ L N SL+ TG +Q+RVHM L I+GD+ Y +SK
Sbjct: 235 AHAAVTRYQVLD----NTSGCSLVELQPLTGVKNQLRVHMALALTCPILGDHKYSH-WSK 289
Query: 211 SLIFNRQALHAYKLGLIHPK 230
+LGL+ K
Sbjct: 290 LAPQKLPEGTLRRLGLVQSK 309
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 65/228 (28%), Positives = 110/228 (48%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + I+++DN+++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 93 KELSRRILHQDNDLVVINKPYGLPVHGGPG-VQLCISD-VLPILAKMLHGHKAEPLHLCH 150
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAI----M 135
RLDK ++G+MV+A K H V +L + V++KY A+ +P + G+++ I +
Sbjct: 151 RLDKETTGVMVLAWE-KDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIKEKEV 209
Query: 136 RNPHNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
+ P KMT+S ++ N K R A + + + +L+ TG H
Sbjct: 210 QGPQQHHKMTLSPSYRLDNGKMVKVRASRDAHVAVTQYQVLSSASSSALVELQPVTGIKH 269
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHA---YKLGLIHPK 230
Q+RVH+ + G+ L KYS Q L A KLGL K
Sbjct: 270 QLRVHLSF---GLDCPILGDHKYSDWTRLAPQKLSAGTLKKLGLQQSK 314
>GENEDB_PFALCIPARUM|PFE1080w [details] [associations]
symbol:PFE1080w "ribosomal large subunit
pseudouridylate synthase, putative" species:5833 "Plasmodium
falciparum" [GO:0004730 "pseudouridylate synthase activity"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723
GO:GO:0006364 EMBL:AL844504 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01718 RefSeq:XP_001351773.1
ProteinModelPortal:Q8I3P7 EnsemblProtists:PFE1080w:mRNA
GeneID:813031 KEGG:pfa:PFE1080w EuPathDB:PlasmoDB:PF3D7_0521500
HOGENOM:HOG000283688 ProtClustDB:CLSZ2432216 Uniprot:Q8I3P7
Length = 487
Score = 150 (57.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 54/184 (29%), Positives = 93/184 (50%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPA-IGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNS 87
L IIYE++ ++LNK + + + ++ ++ + LL ++V R I +LD +
Sbjct: 64 LKIIYENDYFLVLNKPYDIKLEKGKLDDIYPSV-ETLL-YQKRKLDVFR--ICGQLDYAT 119
Query: 88 SGLMVVAKSIKSYIHLVN-QLKMHIVQRKYLAMVWGIPKLNGM-INAAIMRNPHNRIKMT 145
SGL++VAK K +++N ++ + + YLA+++G L+ + IN I +N KM
Sbjct: 120 SGLLIVAKD-KLSCNILNYNIESKNISKIYLAILYGHLPLDILHINTPISKNKEG-FKMK 177
Query: 146 VSKNFN-----AKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
+ N+N K + IN + ++L TGR HQ+R+H LG IVG
Sbjct: 178 LCYNYNDYYDNGKYCYSLIYPYKHSYINNEKVTLCEMRTVTGRRHQLRLHSLSLGSSIVG 237
Query: 201 DNLY 204
D Y
Sbjct: 238 DETY 241
>UNIPROTKB|Q8I3P7 [details] [associations]
symbol:PFE1080w "Ribosomal large subunit pseudouridylate
synthase, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0006364
EMBL:AL844504 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 KO:K01718
RefSeq:XP_001351773.1 ProteinModelPortal:Q8I3P7
EnsemblProtists:PFE1080w:mRNA GeneID:813031 KEGG:pfa:PFE1080w
EuPathDB:PlasmoDB:PF3D7_0521500 HOGENOM:HOG000283688
ProtClustDB:CLSZ2432216 Uniprot:Q8I3P7
Length = 487
Score = 150 (57.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 54/184 (29%), Positives = 93/184 (50%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPA-IGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNS 87
L IIYE++ ++LNK + + + ++ ++ + LL ++V R I +LD +
Sbjct: 64 LKIIYENDYFLVLNKPYDIKLEKGKLDDIYPSV-ETLL-YQKRKLDVFR--ICGQLDYAT 119
Query: 88 SGLMVVAKSIKSYIHLVN-QLKMHIVQRKYLAMVWGIPKLNGM-INAAIMRNPHNRIKMT 145
SGL++VAK K +++N ++ + + YLA+++G L+ + IN I +N KM
Sbjct: 120 SGLLIVAKD-KLSCNILNYNIESKNISKIYLAILYGHLPLDILHINTPISKNKEG-FKMK 177
Query: 146 VSKNFN-----AKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVG 200
+ N+N K + IN + ++L TGR HQ+R+H LG IVG
Sbjct: 178 LCYNYNDYYDNGKYCYSLIYPYKHSYINNEKVTLCEMRTVTGRRHQLRLHSLSLGSSIVG 237
Query: 201 DNLY 204
D Y
Sbjct: 238 DETY 241
>UNIPROTKB|Q5E9Z1 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 GeneTree:ENSGT00530000063800 EMBL:BT020717
EMBL:BT020773 EMBL:BT020778 EMBL:BT021642 EMBL:BT021761
EMBL:BT025340 EMBL:BT025483 EMBL:BT026244 EMBL:BC134590
IPI:IPI00713333 RefSeq:NP_001015616.1 UniGene:Bt.31431
ProteinModelPortal:Q5E9Z1 Ensembl:ENSBTAT00000027843 GeneID:516934
KEGG:bta:516934 CTD:84881 HOVERGEN:HBG054698 InParanoid:Q5E9Z1
NextBio:20872338 Uniprot:Q5E9Z1
Length = 377
Score = 148 (57.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 60/222 (27%), Positives = 107/222 (48%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + I+++D E++++NK GL VH G + + D +L + +++ P+A + H
Sbjct: 93 KALSRGIVHQDKELVVINKPYGLPVHGGPG-VKLCISD-VLPVLAKILHGPKAKPLHLCH 150
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAIM---- 135
RLDK ++G+MV+A K H V +L + V +KY A+ +P G+++ I+
Sbjct: 151 RLDKETTGVMVLAWE-KEVAHQVQELFRTRQVTKKYWAITVRVPVPEAGVVDIPIVEKEA 209
Query: 136 RNPHNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
+ + KMT+S ++ + K R A + + + +L+ TG H
Sbjct: 210 QGQQHHHKMTLSPSYRMDDGKMVRVRSSRNAQLAVTQYQVLSSSLSAALLELQPITGIKH 269
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLI 227
Q+RVHM + G+ L KYS +NR A G++
Sbjct: 270 QLRVHMSF---GLDCPILGDHKYSD---WNRLAPQKLSAGIL 305
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 147 (56.8 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 55/185 (29%), Positives = 97/185 (52%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + I+++D ++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 93 KALTRGILHQDKNLVVINKPYGLPVHGGPG-VQLCITD-VLPILAKMLHGHKAEPLHLCH 150
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHN 140
RLDK ++G+MV+A K H V +L + V +KY A+ +P M +A ++ P
Sbjct: 151 RLDKETTGVMVLAWD-KDMAHQVQELFRTRQVVKKYWAITVHVP----MPSAGVVDIP-- 203
Query: 141 RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW-LGHGIV 199
V K A+ A+T Y+ L++ + + +L+ TG HQ+RVH+ + L I+
Sbjct: 204 ----IVEKE--AQVAVTQYQVLSSTLSS----ALVELQPITGIKHQLRVHLSFGLDCPIL 253
Query: 200 GDNLY 204
GD+ Y
Sbjct: 254 GDHKY 258
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 55/200 (27%), Positives = 99/200 (49%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + I+++D +++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 93 KELSRRILHQDKDLVVINKPYGLPVHGGPG-VQLCISD-VLPILAKMLHGHKAEPLHLCH 150
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAIMRNP- 138
RLDK ++G+MV+A K H V +L + V++KY A+ +P + G+++ IM
Sbjct: 151 RLDKETTGVMVLAWE-KDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIMEKEV 209
Query: 139 ---HNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
KMT+ ++ N K R A + + + +L+ TG H
Sbjct: 210 AGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHVAVTQYQVLSSTPSSALVELQPVTGIKH 269
Query: 186 QIRVHMQW-LGHGIVGDNLY 204
Q+RVH+ + L I+GD+ Y
Sbjct: 270 QLRVHLAFGLDCPILGDHKY 289
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 62/237 (26%), Positives = 112/237 (47%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + ++++D +++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 94 KALSRGVLHQDKDLVVINKPYGLPVHGGPG-VQLCISD-VLPILAKMLHGHKAEPLHLCH 151
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAI----M 135
RLDK ++G+MV+A K H V + + V +KY A+ +P + G+++ I +
Sbjct: 152 RLDKETTGVMVLAWE-KEVAHQVQEFFRTRQVAKKYWAITVRVPVPSAGVVDIPITEKAV 210
Query: 136 RNPHNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
+ KMT+S ++ N K R A + + H+ +L+ TG H
Sbjct: 211 QGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHIAVTQYHVLSSTLSSALVELQPITGIKH 270
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
Q+RVH+ + G+ L KYS +N+ A LG + + K R +LP
Sbjct: 271 QLRVHLSF---GLNCPILGDHKYSD---WNKLAPQKLSLGTLKKLGLQQTKAR-HLP 320
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 139 (54.0 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 49/188 (26%), Positives = 93/188 (49%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + ++++D +++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 94 KALSRGVLHQDKDLVVINKPYGLPVHGGPG-VQLCISD-VLPILAKMLHGHKAEPLHLCH 151
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAI----M 135
RLDK ++G+MV+A K H V + + V +KY A+ +P + G+++ I +
Sbjct: 152 RLDKETTGVMVLAWE-KEVAHQVQEFFRTRQVAKKYWAITVRVPVPSAGVVDIPITEKAV 210
Query: 136 RNPHNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
+ KMT+S ++ N K R A + + H+ +L+ TG H
Sbjct: 211 QGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHIAVTQYHVLSSTLSSALVELQPITGIKH 270
Query: 186 QIRVHMQW 193
Q+RVH+ +
Sbjct: 271 QLRVHLSF 278
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 140 (54.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 54/200 (27%), Positives = 99/200 (49%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + I+++D ++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 93 KALTRGILHQDKNLVVINKPYGLPVHGGPG-VQLCITD-VLPILAKMLHGHKAEPLHLCH 150
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAIM---- 135
RLDK ++G+MV+A K H V +L + V +KY A+ +P + G+++ I+
Sbjct: 151 RLDKETTGVMVLAWD-KDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVEKEA 209
Query: 136 RNPHNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
+ KMT+S ++ + K R A + + + +L+ TG H
Sbjct: 210 QGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITGIKH 269
Query: 186 QIRVHMQW-LGHGIVGDNLY 204
Q+RVH+ + L I+GD+ Y
Sbjct: 270 QLRVHLSFGLDCPILGDHKY 289
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 141 (54.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 54/196 (27%), Positives = 97/196 (49%)
Query: 14 KKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPF-LI 72
K++F + E+K + ++Y+D II+LNK GL V G + ++ + F
Sbjct: 168 KESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSG-IKTSIDELAASCLKFDKS 226
Query: 73 NVPRAGIVHRLDKNSSGLMVVAKS--IKSYIHLVNQ----------LKMHI--VQRKYLA 118
PR +VHRLD++ SGL+V+A++ + +H + + +K ++ ++RKY+A
Sbjct: 227 ESPR--LVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMA 284
Query: 119 MVWGIP-KLNGMINAAIMRNPHNRIKMT-VSKNFNAKPALTYYERLATGIINKKHISLIR 176
+V G P + G I+A + + + K ++ N N + T + +I
Sbjct: 285 LVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTW 344
Query: 177 CNLK--TGRTHQIRVH 190
L+ TGR HQ+RVH
Sbjct: 345 LELRPLTGRKHQLRVH 360
>UNIPROTKB|Q8I3Z1 [details] [associations]
symbol:PFE0570w "MATH and LRR domain-containing protein
PFE0570w" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002083
InterPro:IPR006145 InterPro:IPR008974 InterPro:IPR016024
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50144 GO:GO:0016021
SUPFAM:SSF48371 GO:GO:0003723 SUPFAM:SSF49599 EMBL:AL844504
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 RefSeq:XP_001351672.1
HSSP:P0AA39 ProteinModelPortal:Q8I3Z1 IntAct:Q8I3Z1
MINT:MINT-1566570 PRIDE:Q8I3Z1 EnsemblProtists:PFE0570w:mRNA
GeneID:812939 KEGG:pfa:PFE0570w EuPathDB:PlasmoDB:PF3D7_0511500
eggNOG:COG0564 Uniprot:Q8I3Z1
Length = 10,061
Score = 111 (44.1 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 177 CNLK--TGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKL---GLIHPKN 231
CN+K TGRTHQIRVHM+ +GH +V D KKY + N +++ LI N
Sbjct: 7396 CNVKIHTGRTHQIRVHMRHIGHPLVSD----KKYLNPSLSNLDKFWCFRMFLHSLILEFN 7451
Query: 232 NLKLKWRINLPDDISK 247
N + NL DD+ K
Sbjct: 7452 NPDYYF-FNLNDDMKK 7466
Score = 97 (39.2 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 64 LLEIYPFLINVPR-----AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
+++ +P L V + G+ HR+D +SG +++AK+ ++ L +Q + V ++Y+
Sbjct: 7062 MMKSFPHLETVKKWHKLECGLCHRIDLETSGSLIIAKTKEAREFLFDQFRKRNVYKEYIL 7121
Query: 119 MVWG-IPKLNGMINAAIMRNPHN 140
+ G I K G IN +I + +N
Sbjct: 7122 LCHGRIKKKKGFINKSIQTHEYN 7144
Score = 50 (22.7 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 16 NFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIY 68
NF+LN E + D ++ +LN + PA+ N ++ +IY
Sbjct: 4574 NFYLNMKEPNIFSKDYTKLNDYNFVLNMKEVYDIQPAVINKKSKCEESSNKIY 4626
Score = 45 (20.9 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 8 LIIIKPKKNFFLNKTEKKVIKL---DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
LII K F+ N T K +I + II DNE L G H N + + N+
Sbjct: 3047 LIITKNMPLFYSNITLKNIINVRNNSIIDSDNERKHLIHKIG-EDHHHNNNSNNNVEGNI 3105
Query: 65 LEIY 68
++Y
Sbjct: 3106 SKVY 3109
Score = 41 (19.5 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 21 KTEKKVIKLDIIYEDNEIII 40
K +K VI+LD + DN + I
Sbjct: 6055 KIKKNVIRLDNLSADNYLTI 6074
Score = 41 (19.5 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 20 NKTEKKVIKLDIIYEDNEIIILNKSAGL 47
N +KK+ +D I E N++ ++ K+ +
Sbjct: 3160 NTNDKKLDVVDNISETNDLNLIRKNGDI 3187
Score = 38 (18.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 20 NKTEKKVIKLDIIYE--DN------EIIILNKS 44
N K++IKL+ +Y DN ++I++KS
Sbjct: 4413 NNVNKEIIKLNSLYSFLDNLHKCVGSLLIIDKS 4445
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 18 FLNKTEKKVI------KLDIIYEDNEIII 40
FLNK EKK+ +++ I+++N + I
Sbjct: 3664 FLNKLEKKLTHDFIEKQINFIFDNNYLEI 3692
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 6 YELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEII 39
YE I++ K+ K EK+ LD I + E I
Sbjct: 4255 YE-ILLSNFKSLNYEKIEKEYYSLDYILGNFEYI 4287
>UNIPROTKB|H3BSG4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000565377 Bgee:H3BSG4 Uniprot:H3BSG4
Length = 173
Score = 122 (48.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 151 NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK 210
N KP+LT L G+ +S + TGRTHQ+RVH LGH +VGD YG+ +
Sbjct: 11 NPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGR 70
Query: 211 SLIFNRQALHAYKL 224
R LHA+ L
Sbjct: 71 EDRPFRMMLHAFYL 84
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 134 (52.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 58/222 (26%), Positives = 106/222 (47%)
Query: 25 KVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG---IVH 81
K + I+++D +++++NK GL VH G + + D +L I +++ +A + H
Sbjct: 92 KALSRGIVHQDKDLLVINKPYGLPVHGGPG-VQLCISD-VLPILAKILHGHKAEPLHLCH 149
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQL-KMHIVQRKYLAMVWGIPKLN-GMINAAIM---- 135
RLDK ++G+MV+A K H V +L + V +KY A+ +P + G+++ I+
Sbjct: 150 RLDKETTGVMVLAWE-KEVAHQVQELFRTRQVAKKYWAITVRVPVPSAGVVDIPIIEKEV 208
Query: 136 RNPHNRIKMTVSKNF---NAKPALTYYERLATGIINKKHI-------SLIRCNLKTGRTH 185
+ KMT+ ++ N K R A + + + +L+ TG H
Sbjct: 209 QGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVLSSTLSSALLELQPVTGIKH 268
Query: 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLI 227
Q+RVH+ + G+ L KYS +NR A +G++
Sbjct: 269 QLRVHLSF---GLDCPILGDHKYSD---WNRLAPQKLSVGVL 304
>UNIPROTKB|H3BMZ6 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000569601 Bgee:H3BMZ6 Uniprot:H3BMZ6
Length = 181
Score = 122 (48.0 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 151 NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK 210
N KP+LT L G+ +S + TGRTHQ+RVH LGH +VGD YG+ +
Sbjct: 14 NPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGR 73
Query: 211 SLIFNRQALHAYKL 224
R LHA+ L
Sbjct: 74 EDRPFRMMLHAFYL 87
>UNIPROTKB|E1C0L7 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
OMA:MMLHAHL EMBL:AADN02023681 EMBL:AADN02023682 IPI:IPI00585704
Ensembl:ENSGALT00000008518 Uniprot:E1C0L7
Length = 254
Score = 128 (50.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 57/206 (27%), Positives = 87/206 (42%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSG----TLFDNLLEIYPFLINVPRAGIVHRLD 84
L I+Y+ + I++NK + + + TL L +P L + P H L
Sbjct: 9 LCILYQSPDFIVVNKHWDIRIDSMMWYQDAYETLTLQSQLKHRFPDLAD-PDT-FQHLLG 66
Query: 85 KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIK 143
++SG + A + + K +V + YLA+V G + + I AI +N +
Sbjct: 67 FSTSGALCFALNKAAAGSAYKCFKDRLVTKAYLALVRGHVDQSRMTIRYAIGKNTVEGMT 126
Query: 144 --MTVSKNF---NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGI 198
M + N KP + L G + ++ + TGRTHQ+RVH +GH I
Sbjct: 127 HMMCIEGTEGCENPKPCQSELIVLEHGSYSGDPVTKVLLQPLTGRTHQLRVHCSAIGHPI 186
Query: 199 VGDNLYGKKYSKSLIFNRQALHAYKL 224
VGD Y K R LHAY L
Sbjct: 187 VGDFTYSHKKDSGPY--RMMLHAYYL 210
>UNIPROTKB|H3BQN8 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 EMBL:CH471112 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL031033 UniGene:Hs.101742
HGNC:HGNC:14173 SMR:H3BQN8 Ensembl:ENST00000567114 Uniprot:H3BQN8
Length = 183
Score = 122 (48.0 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 151 NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK 210
N KP+LT L G+ +S + TGRTHQ+RVH LGH +VGD YG+ +
Sbjct: 11 NPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGR 70
Query: 211 SLIFNRQALHAYKL 224
R LHA+ L
Sbjct: 71 EDRPFRMMLHAFYL 84
>GENEDB_PFALCIPARUM|PFI0685w [details] [associations]
symbol:PFI0685w "pseudouridylate synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0020011 EMBL:AL844508 KO:K01718
RefSeq:XP_001352012.1 ProteinModelPortal:Q8I312
EnsemblProtists:PFI0685w:mRNA GeneID:813417 KEGG:pfa:PFI0685w
EuPathDB:PlasmoDB:PF3D7_0914000 HOGENOM:HOG000282881
ProtClustDB:CLSZ2431954 Uniprot:Q8I312
Length = 955
Score = 94 (38.1 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 153 KPALTYYERLA-TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS 211
KP++T + L+ I++ SLI C TGRTHQIR H++ L + I D Y K + +
Sbjct: 738 KPSITKFMFLSYNSSIDE---SLILCQPITGRTHQIRAHLKSLSYPISNDAHYNKTFEQE 794
Query: 212 LIFNRQALH 220
I L+
Sbjct: 795 YIHKSNYLY 803
Score = 66 (28.3 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
+HRLDK +SG++ K+ K + L + +++ Y+ V G +IN + N
Sbjct: 515 LHRLDKLTSGIVFFGKNKKFSTYFSQNLSDNKIKKTYITRVQG--DFRKLINKLLHSN-- 570
Query: 140 NRIKMTVSKNFNAKPALTYY 159
N IK ++ N + Y
Sbjct: 571 NIIKRVNGQDNNLDNIINNY 590
Score = 60 (26.2 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 23 EKKVI--KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
EK V+ K+ I+YED I + K + L HP +G+ +++LL I
Sbjct: 124 EKPVLCNKIIILYEDQNFICVYKHSSLPTHP-VGSYQ---YNSLLRI 166
>UNIPROTKB|Q8I312 [details] [associations]
symbol:PFI0685w "Pseudouridylate synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0020011 EMBL:AL844508 KO:K01718
RefSeq:XP_001352012.1 ProteinModelPortal:Q8I312
EnsemblProtists:PFI0685w:mRNA GeneID:813417 KEGG:pfa:PFI0685w
EuPathDB:PlasmoDB:PF3D7_0914000 HOGENOM:HOG000282881
ProtClustDB:CLSZ2431954 Uniprot:Q8I312
Length = 955
Score = 94 (38.1 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 153 KPALTYYERLA-TGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS 211
KP++T + L+ I++ SLI C TGRTHQIR H++ L + I D Y K + +
Sbjct: 738 KPSITKFMFLSYNSSIDE---SLILCQPITGRTHQIRAHLKSLSYPISNDAHYNKTFEQE 794
Query: 212 LIFNRQALH 220
I L+
Sbjct: 795 YIHKSNYLY 803
Score = 66 (28.3 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
+HRLDK +SG++ K+ K + L + +++ Y+ V G +IN + N
Sbjct: 515 LHRLDKLTSGIVFFGKNKKFSTYFSQNLSDNKIKKTYITRVQG--DFRKLINKLLHSN-- 570
Query: 140 NRIKMTVSKNFNAKPALTYY 159
N IK ++ N + Y
Sbjct: 571 NIIKRVNGQDNNLDNIINNY 590
Score = 60 (26.2 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 23 EKKVI--KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEI 67
EK V+ K+ I+YED I + K + L HP +G+ +++LL I
Sbjct: 124 EKPVLCNKIIILYEDQNFICVYKHSSLPTHP-VGSYQ---YNSLLRI 166
>UNIPROTKB|O07166 [details] [associations]
symbol:Rv3300c "Pseudouridine synthase" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005886
GenomeReviews:AL123456_GR GO:GO:0003723 EMBL:BX842582
HOGENOM:HOG000275916 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K06177 EMBL:CP003248 PIR:F70533 RefSeq:NP_217817.1
RefSeq:YP_006516777.1 ProteinModelPortal:O07166 SMR:O07166
EnsemblBacteria:EBMYCT00000003755 GeneID:13318123 GeneID:887958
KEGG:mtu:Rv3300c KEGG:mtv:RVBD_3300c PATRIC:18155955
TubercuList:Rv3300c OMA:FFRMHEV ProtClustDB:CLSK792416
Uniprot:O07166
Length = 305
Score = 122 (48.0 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 44/174 (25%), Positives = 77/174 (44%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
++++D +I++++K L P +++ T L + +P HRLD+ ++G+
Sbjct: 87 VLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRE----LGLPELSPAHRLDRLTAGV 142
Query: 91 MVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNF 150
++ + +V++ YLA P G+ ++R+ +K
Sbjct: 143 LLFTTRREVRGSYQTMFARGLVRKTYLARA---PVAPGLALPRLVRS--RIVKRRGHLQA 197
Query: 151 NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+P + E L I L R TGRTHQ+RVHM LG I+GD LY
Sbjct: 198 VCEPGVPNAETLVERIARD---GLYRLTPTTGRTHQLRVHMAALGIPIMGDPLY 248
>SGD|S000004155 [details] [associations]
symbol:PUS5 "Pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS;IMP]
[GO:0001522 "pseudouridine synthesis" evidence=IEA;IMP] [GO:0000154
"rRNA modification" evidence=IMP] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;IMP]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 SGD:S000004155
GO:GO:0005739 EMBL:BK006945 GO:GO:0003723 EMBL:U51921 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0000154 eggNOG:COG0564
BRENDA:4.2.1.70 KO:K15265 EMBL:AY557942 PIR:S68481
RefSeq:NP_013266.1 ProteinModelPortal:Q06244 STRING:Q06244
EnsemblFungi:YLR165C GeneID:850862 KEGG:sce:YLR165C CYGD:YLR165c
HOGENOM:HOG000115801 OMA:TANECKE OrthoDB:EOG40W004
BioCyc:MetaCyc:MONOMER-16705 NextBio:967185 Genevestigator:Q06244
GermOnline:YLR165C Uniprot:Q06244
Length = 254
Score = 117 (46.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 62/211 (29%), Positives = 94/211 (44%)
Query: 28 KLDIIYEDNEIIILNKSAGLVVHP----AIG----NLSGT-LFDNLLEIYPFLINVPRAG 78
++ II+E+ I+NK G+ P G NL T L + IY V
Sbjct: 6 QIPIIFENTHYFIVNKPPGIPSQPPDCRTWGRTHPNLDPTPLLERFKAIYYSHREVELCR 65
Query: 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKM-----HIVQRKYLAMVWGIPKLNGMINAA 133
VHRLD +G M++AK+ + L+ + +QRKY+A+V + +G N
Sbjct: 66 TVHRLDHCVTGGMLIAKTKDGSVKFSRFLQKGGNNGYKLQRKYVAIV----ESSGRFN-- 119
Query: 134 IMRNPHN-RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHM- 191
P+N IK NF +++ R T + + I L TG+ HQIR H+
Sbjct: 120 ---KPNNYEIKYGPKYNF----LISHGGREITKF-KEVDENCIVLQLVTGKKHQIRNHVS 171
Query: 192 QWLGHGIVGDNLYGKKYSKSLIFNRQ-ALHA 221
Q L I+ D +G + +FN Q ALH+
Sbjct: 172 QILNQPILNDKRHGSTVNFPELFNDQIALHS 202
>ASPGD|ASPL0000068180 [details] [associations]
symbol:AN10936 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:BN001304 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 OMA:GHPISND
EnsemblFungi:CADANIAT00000078 Uniprot:C8VCJ6
Length = 572
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 43/141 (30%), Positives = 74/141 (52%)
Query: 28 KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNS 87
++ II+E +++++++K AG+ VH + G +L I VPR +RLD+ +
Sbjct: 124 EIGIIHETDDLLVIDKPAGVPVH-STGRYHYNSVMEILRIQNGGAYVPRP--CNRLDRLT 180
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMR-NPH---NRI 142
SG+M V K+ + + +LK VQ++Y+A V G P +++ IM +P NR+
Sbjct: 181 SGVMFVGKTAQGADRMTVKLKERTVQKEYVARVKGRFPDGVVVVDQPIMSVSPKVGLNRV 240
Query: 143 KMTVSKNFNAKPALTYYERLA 163
+ T K A T + RLA
Sbjct: 241 RAT------GKEAKTKFRRLA 255
>TIGR_CMR|CPS_3679 [details] [associations]
symbol:CPS_3679 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177 RefSeq:YP_270347.1
ProteinModelPortal:Q47XX3 STRING:Q47XX3 GeneID:3519865
KEGG:cps:CPS_3679 PATRIC:21470283 HOGENOM:HOG000225813 OMA:DHTTINR
ProtClustDB:CLSK938158 BioCyc:CPSY167879:GI48-3701-MONOMER
Uniprot:Q47XX3
Length = 318
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 39/136 (28%), Positives = 67/136 (49%)
Query: 73 NVPR---AGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM 129
N+P A IVHRLD+ ++GL++VA S + L + + H +++ Y +V G +
Sbjct: 146 NLPNERPAFIVHRLDRAATGLIIVAHSKSAARALSHMFEHHQLEKHYQIIVHGDHRKRAQ 205
Query: 130 INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRV 189
P + + + K A + + LA + + SLI+ + +GR HQIR+
Sbjct: 206 --------PD-----IIDSDVDGKKARSTFTCLAYDEMTDQ--SLIKVKIDSGRKHQIRL 250
Query: 190 HMQWLGHGIVGDNLYG 205
H + +VGD L+G
Sbjct: 251 HAASIAMPVVGDRLHG 266
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.141 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 257 257 0.00086 114 3 11 22 0.41 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 99
No. of states in DFA: 596 (63 KB)
Total size of DFA: 188 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.31u 0.08s 22.39t Elapsed: 00:00:02
Total cpu time: 22.33u 0.08s 22.41t Elapsed: 00:00:02
Start: Thu Aug 15 17:31:52 2013 End: Thu Aug 15 17:31:54 2013