RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8191
(257 letters)
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase D, RluD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 141 bits (356), Expect = 6e-42
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 6 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 65
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 66 TTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 125
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA+T+Y + + + +R L+TGRTHQIRVHM + H +VGD +YG
Sbjct: 126 HP--MGKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 179
Query: 207 KYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 180 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 233
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase C, RluC {Escherichia coli [TaxId: 562]}
Length = 227
Score = 133 bits (336), Expect = 3e-39
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
I+YED+ I++LNK +G VH G G + + L + P +VHRLD+++SG+
Sbjct: 3 IMYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP---EARFLELVHRLDRDTSGV 58
Query: 91 MVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKN 149
++VAK + L QL+ +Q+ YLA+V G + A +++N + V +
Sbjct: 59 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS 118
Query: 150 FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS 209
KP+ T ++ +L+RC+ TGRTHQIRVH Q+ GH I D+ YG +
Sbjct: 119 QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 174
Query: 210 ------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
NR LHA L HP ++ + + + + +
Sbjct: 175 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 220
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine
516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Length = 174
Score = 34.5 bits (78), Expect = 0.005
Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 44/217 (20%)
Query: 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVV 93
E+ + +LNK G V G+ T++ + RLD +++GL+++
Sbjct: 1 EEGQYFMLNKPQGCVCSNDDGDYP-TIYQFFDYPLA-----GKLHSAGRLDVDTTGLVLL 54
Query: 94 AKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAK 153
+ + + + + N + +
Sbjct: 55 TDDGQWSHRITSPKHHCEKTYLV------------TLADPVEENYSAACAEGILLRGEKE 102
Query: 154 PALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI 213
P + + + GR HQ++ LG+ +V
Sbjct: 103 PTKPAK-------LEILDDYNVNLTISEGRYHQVKRMFAALGNKVV-------------- 141
Query: 214 FNRQALHAYKLGLIHPKNNLKL-KWRINLPDDISKLI 249
LH +K+G + +L+ ++R +I KL+
Sbjct: 142 ----GLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV 174
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine
516 synthase RsuA {Escherichia coli [TaxId: 562]}
Length = 172
Score = 32.0 bits (72), Expect = 0.041
Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 44/212 (20%)
Query: 39 IILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIK 98
+LNK G V + T+ L E + RLD +++GL+++
Sbjct: 4 FMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA-----WKLHAAGRLDIDTTGLVLMTD--- 54
Query: 99 SYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTY 158
Q I ++ + L + +++ K+
Sbjct: 55 -----DGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA---- 105
Query: 159 YERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQA 218
++ + +R + GR HQ++ +G+ +V
Sbjct: 106 -------VLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVV------------------E 140
Query: 219 LHAYKLGLIHPKNNLKL-KWRINLPDDISKLI 249
LH ++G I +L ++R ++I+ ++
Sbjct: 141 LHRERIGGITLDADLAPGEYRPLTEEEIASVV 172
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 29.1 bits (64), Expect = 0.59
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 119 MVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
++W +P +G + + I ++S N N P+ ++ + K ++ +
Sbjct: 447 LLWEMPGNDGYLQLVGIMQKF--IDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 504
Query: 179 LKT 181
+KT
Sbjct: 505 VKT 507
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 26.7 bits (58), Expect = 2.5
Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVA- 94
N +++L+K G+ + A+ + + N RAG LD ++G++ +
Sbjct: 4 NGVLLLDKPQGMSSNDALQKVKR------------IYNANRAGHTGALDPLATGMLPICL 51
Query: 95 -----------KSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
S K Y ++ A + + +A + + +
Sbjct: 52 GEATKFSQYLLDSDKRYR---VIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFR 108
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
+ + + AL Y + + T H
Sbjct: 109 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN 158
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 26.5 bits (57), Expect = 3.9
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 18/54 (33%)
Query: 192 QWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKN--NLKLKWRINLPD 243
+WL HG +++S L I N +L L W ++L +
Sbjct: 17 EWLSHG--RTY-AEQRFSP-------------LKQIDASNVRSLGLAWYMDLDN 54
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 582
Score = 26.5 bits (57), Expect = 4.5
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 18/55 (32%)
Query: 192 QWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKN--NLKLKWRINLPDD 244
L +G+ + +++S L ++ N L W + D+
Sbjct: 17 DVLQYGM---GTHAQRWSP-------------LKQVNADNVFKLTPAWSYSFGDE 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.419
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 985,754
Number of extensions: 45645
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 15
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)