BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8193
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 299/418 (71%), Gaps = 2/418 (0%)
Query: 11 SYLSQNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEG 70
SYL + D GPW ++ +Q+DRV PYLG L+ E LK PK++LIVDVP+ D+G V ++EG
Sbjct: 7 SYLGK-DGGPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEG 65
Query: 71 YRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLS 130
YRV HN RGP KGGVR+HP+VTLSE++AL+GWMTIKNAAV +PYGG KGGIRV+P+ LS
Sbjct: 66 YRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLS 125
Query: 131 NNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKP 190
EL RLTRRYT+EI ++G ++DIPAPDV T + M+WMMDTYS T+PG+VTGKP
Sbjct: 126 PGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKP 185
Query: 191 ISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKI 250
I++GGS GR+ ATGRGVFI QGFGNVG+ AA F GA++
Sbjct: 186 IALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARV 245
Query: 251 VAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE 310
VA+QD T+YN G + L ++V ++ + + E + + +FW +P + L+PAA+E
Sbjct: 246 VAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFLVPAALE 304
Query: 311 DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQN 370
QIT NA + A+I+ EGANGPTT ADDIL +KG+++ PDVI NAGGV VSYFEWVQ+
Sbjct: 305 KQITEQNAWRIRARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQD 364
Query: 371 LSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
++ WTE+EIN RL ++ NAF+A+W++A KK+ LRTAA+++ TRVL+A RGL
Sbjct: 365 FNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRGL 422
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 299/418 (71%), Gaps = 2/418 (0%)
Query: 11 SYLSQNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEG 70
SYL + D GPW ++ +Q+DRV PYLG L+ E LK PK++LIVDVP+ D+G V ++EG
Sbjct: 23 SYLGK-DGGPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEG 81
Query: 71 YRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLS 130
YRV HN RGP KGGVR+HP+VTLSE++AL+GWMTIKNAAV +PYGG KGGIRV+P+ LS
Sbjct: 82 YRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLS 141
Query: 131 NNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKP 190
EL RLTRRYT+EI ++G ++DIPAPDV T + M+WMMDTYS T+PG+VTGKP
Sbjct: 142 PGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKP 201
Query: 191 ISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKI 250
I++GGS GR+ ATGRGVFI QGFGNVG+ AA F GA++
Sbjct: 202 IALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARV 261
Query: 251 VAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE 310
VA+QD T+YN G + L ++V ++ + + E + + +FW +P + L+PAA+E
Sbjct: 262 VAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFLVPAALE 320
Query: 311 DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQN 370
QIT NA + A+I+ EGANGPTT ADDIL +KG+++ PDVI NAGGV VSYFEWVQ+
Sbjct: 321 KQITEQNAWRIRARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQD 380
Query: 371 LSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
++ WTE+EIN RL ++ NAF+A+W++A KK+ LRTAA+++ TRVL+A RGL
Sbjct: 381 FNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRGL 438
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 264/405 (65%), Gaps = 2/405 (0%)
Query: 25 LQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKG 84
++Q +R + S E+L+ PK++LIV+ P+ D+G V + GYRVQHN+ RGP KG
Sbjct: 11 VEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKG 70
Query: 85 GVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNE 144
G+R+HPDVTL E+ AL+ WMT K A +N+P+GG KGG+RV+PK LS NEL RL+RR+ +E
Sbjct: 71 GIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSE 130
Query: 145 ISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATG 204
I IIG DIPAPDV T+ +++W MDTYS +T+ GIVTGKP+ +GGS GR++ATG
Sbjct: 131 IQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATG 190
Query: 205 RGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNP 263
RGV + QGFGNVG AA L + G+K+VA+ D + IYNP
Sbjct: 191 RGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNP 250
Query: 264 NGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA 323
GF++ +L +Y ++ + +GE+I + +E + DIL+PAA+E I NA + A
Sbjct: 251 EGFDVEELIRYKKEHGTVVTYPKGERITN-EELLELDVDILVPAALEGAIHAGNAERIKA 309
Query: 324 KIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINL 383
K ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L + W ++
Sbjct: 310 KAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRN 369
Query: 384 RLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
L ++ AF+ + ++ V +RTAA+I+ RV A K RG+
Sbjct: 370 ALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRGI 414
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/405 (45%), Positives = 264/405 (65%), Gaps = 2/405 (0%)
Query: 25 LQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKG 84
++Q +R + S E+L+ PK++LIV+ P+ D+G V + GYRVQHN+ RGP KG
Sbjct: 10 VEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKG 69
Query: 85 GVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNE 144
G+R+HPDVTL E+ AL+ WMT K A +++P+GG KGG+RV+PK LS NEL RL+RR+ +E
Sbjct: 70 GIRYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSE 129
Query: 145 ISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATG 204
I IIG DIPAPDV T+ +++W MDTYS +T+ GIVTGKP+ +GGS GR++ATG
Sbjct: 130 IQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATG 189
Query: 205 RGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNP 263
RGV + QGFGNVG AA L + G+K+VA+ D + IYNP
Sbjct: 190 RGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNP 249
Query: 264 NGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA 323
GF++ +L +Y ++ + +GE+I + +E + DIL+PAA+E I NA + A
Sbjct: 250 EGFDVEELIRYKKEHGTVVTYPKGERITN-EELLELDVDILVPAALEGAIHAGNAERIKA 308
Query: 324 KIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINL 383
K ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L + W ++
Sbjct: 309 KAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRN 368
Query: 384 RLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
L ++ AF+ + ++ V +RTAA+I+ RV A K RG+
Sbjct: 369 ALEKMMKKAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRGI 413
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 357 bits (917), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 183/405 (45%), Positives = 260/405 (64%), Gaps = 2/405 (0%)
Query: 25 LQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKG 84
++Q +R + S E+L+ PK++LIV+ P+ D+G V + GYRVQHN+ RGP KG
Sbjct: 10 VEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKG 69
Query: 85 GVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNE 144
G+R+HPDVTL E+ AL+ WMT K A +N+P+GG KGG+RV+PK LS EL RL+RR+ E
Sbjct: 70 GIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFRE 129
Query: 145 ISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATG 204
I IIG DIPAPDV T+ +++W MD Y +T+ GIVTGKP+ +GGS GR++ATG
Sbjct: 130 IQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATG 189
Query: 205 RGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNP 263
RGV + QGFGNVG AA L + G+K+VA+ D + IYNP
Sbjct: 190 RGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNP 249
Query: 264 NGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA 323
GF++ +L +Y ++ + +GE+I + +E + DIL+PAA+E I NA + A
Sbjct: 250 EGFDVEELIRYKKEHGTVVTYPKGERITN-EELLELDVDILVPAALEGAIHAGNAERIKA 308
Query: 324 KIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINL 383
K ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L + W ++
Sbjct: 309 KAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRN 368
Query: 384 RLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
L ++ AF+ + ++ V +RTAA+I+ RV A K RG+
Sbjct: 369 ALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRGI 413
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 176/394 (44%), Positives = 246/394 (62%), Gaps = 4/394 (1%)
Query: 35 LGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTL 94
LG E++K P+++L V +P++ DNG V + GYR QHN GP KGGVRFHP+V
Sbjct: 32 LGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNE 91
Query: 95 SEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKD 154
++ ALS WMT+K N+PYGG KGGI +P+ +S EL RL+R Y IS I+G KD
Sbjct: 92 EKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKD 151
Query: 155 IPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXX 214
IPAPDV T+ QIM+WMMD YS + + PG +TGKP+ +GGS GR+ AT +GV I
Sbjct: 152 IPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEA 211
Query: 215 XXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPK-LQK 273
QGFGN GS A AGAK++ I D +YNP+G +IP L K
Sbjct: 212 VKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDK 271
Query: 274 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGP 333
+F F + + ++E CDIL+PAAI +QIT NA+N+ A I++E ANGP
Sbjct: 272 RDSFGMVTNLFTD---VITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERANGP 328
Query: 334 TTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAF 393
TT +A IL ++G++L PD++ +AGGV VSYFEWVQN W+E+E+ +L +++ ++F
Sbjct: 329 TTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSF 388
Query: 394 DAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
+ I++ A T KV +R AA++ G + +A + RG
Sbjct: 389 ETIYQTAATHKVDMRLAAYMTGIRKSAEASRFRG 422
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 354 bits (908), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 184/412 (44%), Positives = 254/412 (61%), Gaps = 5/412 (1%)
Query: 20 PWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILR 79
P+ + ++Q++R Y+ +E LK P++I+ V +P+E D+G V + G+RVQHN R
Sbjct: 5 PYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWAR 64
Query: 80 GPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTR 139
GP KGG+R+HP+ TLS + AL+ WMT K A +++PYGG KGGI V+PK LS+ E RL R
Sbjct: 65 GPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLAR 124
Query: 140 RYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIP--GIVTGKPISIGGSF 197
Y I +I +DIPAPDV T+ QIM+WMMD Y T P GI+TGKP+SIGGS
Sbjct: 125 GYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSL 184
Query: 198 GRQKATGRGV-FIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKA-GAKIVAIQD 255
GR +AT RG + I QG+GN G A + + G K+VA+ D
Sbjct: 185 GRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSD 244
Query: 256 DKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITI 315
K IYNP+G N ++ K+ S+KDF I + +E + D+L PAAIE+ IT
Sbjct: 245 SKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITN-EELLELEVDVLAPAAIEEVITK 303
Query: 316 NNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLL 375
NA+N+ AKI+ E ANGP T EAD+IL +KGI+ PD + NAGGV VSYFEWVQN++
Sbjct: 304 KNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYY 363
Query: 376 WTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
WT +E+ RL+ + AF ++ +A K + +R AA+++ RV QA RG
Sbjct: 364 WTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRG 415
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 350 bits (899), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 188/417 (45%), Positives = 253/417 (60%), Gaps = 10/417 (2%)
Query: 17 DLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHN 76
++ P+ + ++Q++R Y+ +E LK P +I+ V VPIE D+G V + G+RVQHN
Sbjct: 3 EIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHN 62
Query: 77 ILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMR 136
RGP KGG+R+HP TLS + AL+ WMT K A V++PYGG KGGI VNPK LS E R
Sbjct: 63 WARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQER 122
Query: 137 LTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIP--GIVTGKPISIG 194
L R Y + +IG DIPAPDV T+ +IM WMMD Y T P G++TGKP+SIG
Sbjct: 123 LARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIG 182
Query: 195 GSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKA-GAKIVAI 253
GS GR AT +G QG+GN G A L + G +VA+
Sbjct: 183 GSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAV 242
Query: 254 QDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQI 313
D + IYNP+G + ++ K+ S+KDF I + +E + D+L PAAIE+ I
Sbjct: 243 SDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITN-EELLELEVDVLAPAAIEEVI 301
Query: 314 TINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSN 373
T NA+N+ AKI+ E ANGP T EADDILR+KGI+ PD + NAGGV VSYFEWVQN++
Sbjct: 302 TEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNING 361
Query: 374 LLWTEQEINLRLNNIICNAFDAIWELANTKK---VSLRTAAFIIGCTRVLQAHKTRG 427
WTE+E+ +L+ + AF WE+ NT K + +R AA+++ +RV QA K RG
Sbjct: 362 YYWTEEEVREKLDKKMTKAF---WEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRG 415
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/401 (44%), Positives = 249/401 (62%), Gaps = 5/401 (1%)
Query: 28 IDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVR 87
I + LG E+LK P ++L V +P+ D+G V + GYR HN GP KGG+R
Sbjct: 25 IHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRA-HNDSVGPTKGGIR 83
Query: 88 FHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS 147
FHP+VT E+ ALS WM++K +++PYGG KGGI +P+++S EL RL+R Y IS
Sbjct: 84 FHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQ 143
Query: 148 IIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGV 207
I+G KD+PAPDV T+ QIM+WMMD YS + PG +TGKP+ +GGS GR+ AT +GV
Sbjct: 144 IVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGV 203
Query: 208 FIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFN 267
I QGFGN GS A AGAK+V I D +Y+P G +
Sbjct: 204 TICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLD 263
Query: 268 IPK-LQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 326
I L + +F K FN+ ++E + CDIL+PAAIE+QIT NA+N+ AKI+
Sbjct: 264 IDYLLDRRDSFGTVTKLFND---TITNQELLELDCDILVPAAIENQITEENAHNIRAKIV 320
Query: 327 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLN 386
+E ANGPTT E IL D+ I+L PDV+ +AGGV VSYFEWVQN W+E+E+ +L
Sbjct: 321 VEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLE 380
Query: 387 NIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
++ +F+ I+E+AN +++ +R AA+++G ++ +A + RG
Sbjct: 381 KMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASRFRG 421
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 178/414 (42%), Positives = 251/414 (60%), Gaps = 10/414 (2%)
Query: 20 PWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILR 79
P+ + ++Q++R Y+ +E LK P++I+ V +P+E D+G V + G+RVQ+N R
Sbjct: 5 PFEIAVKQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWAR 64
Query: 80 GPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTR 139
GP KGG+R+HP+ TLS + AL+ WMT K A +++PYGG KGG+ NPK +S+ E RL R
Sbjct: 65 GPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLAR 124
Query: 140 RYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIP--GIVTGKPISIGGSF 197
Y I +I DIPAPDV T+ QIM+WMMD Y T P G++TGKP S+GG
Sbjct: 125 GYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIV 184
Query: 198 GRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKA-GAKIVAIQDD 256
R AT RG QG+GN G A + + G K+VA+ D
Sbjct: 185 ARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDT 244
Query: 257 KTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN 316
K IYNP+G N ++ + T S+KDF I + +E + D+L P+AIE+ IT
Sbjct: 245 KGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITN-EELLELEVDVLAPSAIEEVITKK 303
Query: 317 NANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
NA+N+ AKI+ E ANGPTT EAD+IL +KGI++ PD + NAGGV VSYFEWVQN++ W
Sbjct: 304 NADNIKAKIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNITGDYW 363
Query: 377 TEQEINLRLNNIICNAFDAIWELANTKK---VSLRTAAFIIGCTRVLQAHKTRG 427
T +E +L+ + AF W++ NT K +++R AA+++ +RV QA K RG
Sbjct: 364 TVEETRAKLDKKMTKAF---WDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRG 414
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 164/391 (41%), Positives = 234/391 (59%), Gaps = 6/391 (1%)
Query: 43 EILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSG 102
+IL P+++LIV++P+ D G +EGYRVQH + GP KGGVRFHP+VTL++ +AL+
Sbjct: 29 KILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAI 88
Query: 103 WMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGT 162
MT+KN+ +PYGGAKG +RV+PK LS EL L+R Y I+ +IG DIPAPDVGT
Sbjct: 89 LMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGT 148
Query: 163 DMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXX 222
+ QIM+WM+D YS K Y +PG+ T KP + G+ R+ ATG GV +
Sbjct: 149 NAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGI 208
Query: 223 XXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT---- 278
QG GNVG A K GAK++A+ D Y G N+ +QK T
Sbjct: 209 EGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPAL 268
Query: 279 -RSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE 337
+ E + + + + DI +PAAIE+ I +NA V A++++EGANGPTT E
Sbjct: 269 VELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPE 328
Query: 338 ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 397
A+ IL ++G+++ PD++ NAGGVI+SY EWV+NL +W E+E RL NI+ N + ++
Sbjct: 329 AERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVY 388
Query: 398 ELANTKK-VSLRTAAFIIGCTRVLQAHKTRG 427
+ +K ++R AA + R+ A K RG
Sbjct: 389 KRWQREKGWTMRDAAIVTALERIYNAMKIRG 419
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 288 bits (736), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/418 (35%), Positives = 228/418 (54%), Gaps = 5/418 (1%)
Query: 11 SYLSQNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEG 70
+Y D G W YL+ ++R G +E L HPK+++ + +P+ D+G+V ++G
Sbjct: 5 AYRPPEDPGLWDTYLEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQG 64
Query: 71 YRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLS 130
YRV H+I RGP KGGVR P VTL + L+ WMT+K A ++P+GGA GGI V+PK LS
Sbjct: 65 YRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLS 124
Query: 131 NNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKP 190
EL RL RRYT E+ +IG + DI PD+G D Q+M+W+MDTYS T+PG+VTGKP
Sbjct: 125 PQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKP 184
Query: 191 ISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKI 250
++GGS GR A G G ++ QG G VG+ A + G ++
Sbjct: 185 HALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRV 244
Query: 251 VAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE 310
VA+ +Y P G ++ ++ T S+ + +E + + ++L+ AA E
Sbjct: 245 VAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLA-----PEEVFGLEAEVLVLAARE 299
Query: 311 DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQN 370
+ + A V A+ ++E AN EA+ L KG ++ PD+++ GG++ SY EWVQ+
Sbjct: 300 GALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQD 359
Query: 371 LSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
L+ W+ +E+ R + DA+ A + LR A + R+ +A + RG+
Sbjct: 360 LNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLDLRMGALALALERLDEATRLRGV 417
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 237/418 (56%), Gaps = 7/418 (1%)
Query: 16 NDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQH 75
+ L P +++ LG E+LK P++++ + +P++ D+G V ++G+R H
Sbjct: 3 DTLNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAH 62
Query: 76 NILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELM 135
+ GP KGGVRFHP+V + E+ ALS WMT K A+ +PYGG KGGI V+P LS EL
Sbjct: 63 SSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELE 122
Query: 136 RLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIP-GIVTGKPISIG 194
+L+R + + +G DIPAPDV T+ QIMSW +D Y + G TGKP++ G
Sbjct: 123 QLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFG 182
Query: 195 GSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQ 254
GS GR +ATG GV ++ QGFGNVG+ + G K+ AI
Sbjct: 183 GSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIA 242
Query: 255 D-DKT----TIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 309
+ D+ +YN NG + +L Y +++ F E+I D +EFW+ DI++PAA+
Sbjct: 243 EWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITD-EEFWTKEYDIIVPAAL 301
Query: 310 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 369
E+ IT A + AK++ E ANGPTT E D +L ++GI L PD++TN+GGV+VSY+EWVQ
Sbjct: 302 ENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQ 361
Query: 370 NLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
N WTE E+ + + A ++ +A+ V+LR A ++ + A K RG
Sbjct: 362 NQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKSIDVAMKLRG 419
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 207/348 (59%), Gaps = 15/348 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 49 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALA 108
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS--IIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++NEL ++TRR+T E++ IG D+PAPD
Sbjct: 109 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPD 168
Query: 160 VGTDMQIMSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI------- 209
+ T + MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 169 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIN 228
Query: 210 -IGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
QGFGNVG + + GAK VA+ + +I+NP+G +
Sbjct: 229 EASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDP 288
Query: 269 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILE 328
+L+ + +I F + + S + CDILIPAA E Q+T +NA V AKII E
Sbjct: 289 KELEDFKLQHGTILGFPKAKIYEGS--ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAE 346
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
GANGPTT EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 347 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 394
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 206/348 (59%), Gaps = 15/348 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 44 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALA 103
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS--IIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++NEL ++TRR+T E++ IG D+PAPD
Sbjct: 104 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPD 163
Query: 160 VGTDMQIMSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI------- 209
+ T + MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 164 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIN 223
Query: 210 -IGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
QGFGNVG + + GAK +A+ + +I+NP+G +
Sbjct: 224 EASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDP 283
Query: 269 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILE 328
+L+ + SI F + + S CDILIPAA E Q+T +NA V AKII E
Sbjct: 284 KELEDFKLQHGSILGFPKAKPYEGS--ILEADCDILIPAASEKQLTKSNAPRVKAKIIAE 341
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
GANGPTT EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 342 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 389
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 206/348 (59%), Gaps = 15/348 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 53 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALA 112
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS--IIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++NEL ++TRR+T E++ IG D+PAPD
Sbjct: 113 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPD 172
Query: 160 VGTDMQIMSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI------- 209
+ T + MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 173 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIN 232
Query: 210 -IGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
QGFGNVG + + GAK +A+ + +I+NP+G +
Sbjct: 233 EASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDP 292
Query: 269 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILE 328
+L+ + SI F + + S CDILIPAA E Q+T +NA V AKII E
Sbjct: 293 KELEDFKLQHGSILGFPKAKPYEGS--ILEADCDILIPAASEKQLTKSNAPRVKAKIIAE 350
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
GANGPTT EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 351 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 398
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 206/348 (59%), Gaps = 15/348 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 44 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALA 103
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS--IIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++NEL ++TRR+T E++ IG D+PAPD
Sbjct: 104 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPD 163
Query: 160 VGTDMQIMSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI------- 209
+ T + MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 164 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIN 223
Query: 210 -IGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
QGFGNVG + + GAK +A+ + +I+NP+G +
Sbjct: 224 EASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDP 283
Query: 269 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILE 328
+L+ + SI F + + S CDILIPAA E Q+T +NA V AKII E
Sbjct: 284 KELEDFKLQHGSILGFPKAKPYEGS--ILEADCDILIPAASEKQLTKSNAPRVKAKIIAE 341
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
GANGPTT EAD I ++ I++ PD+ NAGGV VSYFEW++NL+++ +
Sbjct: 342 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSY 389
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/348 (42%), Positives = 205/348 (58%), Gaps = 15/348 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 49 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALA 108
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS--IIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++NEL ++TRR+T E++ IG D+PAPD
Sbjct: 109 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPD 168
Query: 160 VGTDMQIMSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI------- 209
+ T + MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 169 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIN 228
Query: 210 -IGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
QGFGNVG + + GAK + + + +I+NP+G +
Sbjct: 229 EASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDP 288
Query: 269 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILE 328
+L+ + +I F + + S + CDILIPAA E Q+T +NA V AKII E
Sbjct: 289 KELEDFKLQHGTILGFPKAKIYEGS--ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAE 346
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
GANGPTT EAD I ++ I++ PD+ NAGGV VSYFEW+ NL+++ +
Sbjct: 347 GANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSY 394
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 205/348 (58%), Gaps = 15/348 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 49 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALA 108
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISS--IIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++ +L ++TRR+T E++ IG D+PAP+
Sbjct: 109 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPN 168
Query: 160 VGTDMQIMSWMMDTY-STKKNYTI--PGIVTGKPISIGGSFGRQKATGRGVFI------- 209
+ T + MSW+ DTY ST +Y I VTGKPIS GG GR ATGRGVF
Sbjct: 169 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIE 228
Query: 210 -IGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
QGFGNVG + + GAK VA+ + +I+NP+G +
Sbjct: 229 NASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDP 288
Query: 269 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILE 328
+L+ + +I F + + S + CDILIPAA E Q+T +NA V AKII E
Sbjct: 289 KELEDFKLQHGTILGFPKAKIYEGS--ILEVDCDILIPAASEKQLTKSNAPRVKAKIIAE 346
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLW 376
GANGPTT +AD I ++ I++ PD+ NAGGV VSYF+ ++NL+++ +
Sbjct: 347 GANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSY 394
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 136/431 (31%), Positives = 209/431 (48%), Gaps = 37/431 (8%)
Query: 9 RPSYLSQNDLGPWGVYLQQIDRVTPYLGSLSRW-------IEILKHPKKILIVDVPIEHD 61
R +S+N P +LQ + V L + + +E + P++++ VP +D
Sbjct: 20 REKVVSKNKNEPE--FLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWIND 77
Query: 62 NGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGG 121
GE G+RVQ+N + GP KGG+RFHP V LS I L KN+ +P GG KGG
Sbjct: 78 KGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSLTTLPMGGGKGG 137
Query: 122 IRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYT 181
+PK S NE+++ + + + IG N D+PA D+G + + ++ Y KN +
Sbjct: 138 SDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKN-S 196
Query: 182 IPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAAN 241
G++TGK I GGS R +ATG GV G GNV
Sbjct: 197 FEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVE 256
Query: 242 LFFKAGAKIVAIQDDKTTIYNPNGFNIP--------------KLQKYVTFTRSIKDFNEG 287
+ GA ++ + D I PNGF +L++Y+ ++++ K F
Sbjct: 257 KLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF--- 313
Query: 288 EKINDSKEFWSIPCDILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDILRD 344
++++ W+IPCDI P A +++I N+A+ K+I+EGAN PT +A L+
Sbjct: 314 ----ENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALHKLKQ 369
Query: 345 KGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKK 404
IIL P NAGGV VS E QN L WT QE +++L NI+ + ++ + NT K
Sbjct: 370 NNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIYE---QCHNTSK 426
Query: 405 VSLRTAAFIIG 415
+ L + + G
Sbjct: 427 IYLNESDLVAG 437
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 198/402 (49%), Gaps = 19/402 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E + P++++ VP E DNG+V GYRVQ N GP KGG+RF P V LS + L
Sbjct: 49 LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLG 108
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
K++ +P GGAKGG +P S+ E+MR + + E+ IG + D+PA D+G
Sbjct: 109 FEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLG 168
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M Y G++TGK S GGS R +ATG G+
Sbjct: 169 VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGMG 228
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281
G GNV A + GA+++ D T+ + +GF KL + + I
Sbjct: 229 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLI----EI 284
Query: 282 KDFNEGEKINDSKEF----------WSIPCDILIPAAIEDQITINNANNVTA---KIILE 328
K +G + +KEF WS+P DI +P A ++++ ++ A+ + A K + E
Sbjct: 285 KASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAE 344
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNI 388
GAN PTT EA ++ + G++ AP NAGGV S E QN + L W ++++ RL++I
Sbjct: 345 GANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHI 404
Query: 389 ICNAFDAIWELANTKKV--SLRTAAFIIGCTRVLQAHKTRGL 428
+ + D A + +L A I+G ++ A +G+
Sbjct: 405 MTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 446
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 192/401 (47%), Gaps = 19/401 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E L P++++ V D +V +RVQ + GP KGG+RFHP V LS + L
Sbjct: 54 LERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLG 113
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
T KNA +P GG KGG +PK S E+MR + E+ +G + D+PA D+G
Sbjct: 114 FEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIG 173
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M N T + TGK +S GGS R +ATG G+
Sbjct: 174 VGGREVGFMAGMMKKLSNNTAC-VFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMG 232
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281
G GNV A + GA+++ D T+ + +GF KL + + I
Sbjct: 233 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLI----EI 288
Query: 282 KDFNEGEKINDSKEF----------WSIPCDILIPAAIEDQITINNANNVTA---KIILE 328
K +G + +KEF WS+P DI +P A ++++ ++ A+ + A K + E
Sbjct: 289 KSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAE 348
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNI 388
GAN PTT EA ++ + G++ AP NAGGV S E QN + L W ++++ RL++I
Sbjct: 349 GANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHI 408
Query: 389 ICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRGL 428
+ + A E ++ + A I G +V A +G+
Sbjct: 409 MLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 449
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 192/401 (47%), Gaps = 19/401 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E L P++++ V D ++ +RVQ + GP KGG+RFHP V LS + L
Sbjct: 51 LERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLG 110
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
T KNA +P GG KGG +PK S E+MR + E+ +G + D+PA D+G
Sbjct: 111 FEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIG 170
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M N T + TGK +S GGS R +ATG G+
Sbjct: 171 VGGREVGFMAGMMKKLSNNTAC-VFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMG 229
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281
G GNV A + GA+++ D T+ + +GF KL + + I
Sbjct: 230 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLI----EI 285
Query: 282 KDFNEGEKINDSKEF----------WSIPCDILIPAAIEDQITINNANNVTA---KIILE 328
K +G + +KEF WS+P DI +P A ++++ ++ A+ + A K + E
Sbjct: 286 KASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAE 345
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNI 388
GAN PTT EA ++ + G++ AP NAGGV S E QN + L W ++++ RL++I
Sbjct: 346 GANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHI 405
Query: 389 ICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRGL 428
+ + A E ++ + A I G +V A +G+
Sbjct: 406 MLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 187 bits (475), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 191/401 (47%), Gaps = 19/401 (4%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E L P++++ V D ++ +RVQ + GP KGG+RFHP V LS + L
Sbjct: 51 LERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLG 110
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
T KNA +P GG KGG +PK S E+MR + E+ +G + D+PA D+G
Sbjct: 111 FEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIG 170
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M N T + TGK +S GGS R +ATG G+
Sbjct: 171 VGGREVGFMAGMMKKLSNNTAC-VFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMG 229
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281
G GNV A + GA+++ D + + +GF KL + + I
Sbjct: 230 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESGFTKEKLARLI----EI 285
Query: 282 KDFNEGEKINDSKEF----------WSIPCDILIPAAIEDQITINNANNVTA---KIILE 328
K +G + +KEF WS+P DI +P A ++++ ++ A+ + A K + E
Sbjct: 286 KASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAE 345
Query: 329 GANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNI 388
GAN PTT EA ++ + G++ AP NAGGV S E QN + L W ++++ RL++I
Sbjct: 346 GANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHI 405
Query: 389 ICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRGL 428
+ + A E ++ + A I G +V A +G+
Sbjct: 406 MLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 193/400 (48%), Gaps = 13/400 (3%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E + P++++ VP E DNG+V GYRVQ N GP KGG+RF P V LS + L
Sbjct: 48 LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLG 107
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
K++ +P GGAKGG +P S+ E+MR + + E+ IG + D+PA D+G
Sbjct: 108 FEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLG 167
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M Y G++TGK S GGS R +ATG G
Sbjct: 168 VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDT 227
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS- 280
GFGNV AA + GAK V + IY+P G + Y+ R+
Sbjct: 228 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS 287
Query: 281 ----IKDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGAN 331
++D+ + G + ++ W DI++P A ++ + + A + A K +E AN
Sbjct: 288 GRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVAN 347
Query: 332 GPTTTEADDILRDK-GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIIC 390
PTT EA L + +++AP NAGGV+VS FE QN L WT +E++ +L+ ++
Sbjct: 348 MPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMT 407
Query: 391 NAFDAIWELANTKKV--SLRTAAFIIGCTRVLQAHKTRGL 428
+ D A + +L A I+G ++ A +G+
Sbjct: 408 DIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 192/400 (48%), Gaps = 13/400 (3%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E + P++++ VP E DNG+V GYRVQ N GP GG+RF P V LS + L
Sbjct: 48 LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLG 107
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
K++ +P GGAKGG +P S+ E+MR + + E+ IG + D+PA D+G
Sbjct: 108 FEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLG 167
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M Y G++TGK S GGS R +ATG G
Sbjct: 168 VGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDT 227
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS- 280
GFGNV AA + GAK V + IY+P G + Y+ R+
Sbjct: 228 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS 287
Query: 281 ----IKDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGAN 331
++D+ + G + ++ W DI++P A ++ + + A + A K +E AN
Sbjct: 288 GRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVAN 347
Query: 332 GPTTTEADDILRDK-GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIIC 390
PTT EA L + +++AP NAGGV+VS FE QN L WT +E++ +L+ ++
Sbjct: 348 MPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMT 407
Query: 391 NAFDAIWELANTKKV--SLRTAAFIIGCTRVLQAHKTRGL 428
+ D A + +L A I+G ++ A +G+
Sbjct: 408 DIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 191/400 (47%), Gaps = 13/400 (3%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E + P++++ VP E DNG+V GYRVQ N GP GG+RF P V LS + L
Sbjct: 48 LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLG 107
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
K++ +P GGAKGG +P S+ E+MR + + E+ IG + D+PA D+G
Sbjct: 108 FEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLG 167
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + +M Y G++TGK S GGS R +ATG G
Sbjct: 168 VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDT 227
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS- 280
GFGNV AA + GAK V + IY+P G + Y+ R+
Sbjct: 228 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS 287
Query: 281 ----IKDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGAN 331
++D+ + G + ++ W DI++P A ++ + + A + A K +E AN
Sbjct: 288 GRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVAN 347
Query: 332 GPTTTEADDILRDK-GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIIC 390
PTT EA L + +++AP NAGGV+V FE QN L WT +E++ +L+ ++
Sbjct: 348 MPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQNSERLSWTAEEVDSKLHQVMT 407
Query: 391 NAFDAIWELANTKKV--SLRTAAFIIGCTRVLQAHKTRGL 428
+ D A + +L A I+G ++ A +G+
Sbjct: 408 DIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 187/403 (46%), Gaps = 22/403 (5%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
IE L P++ + V DNG +RVQ+N GP KGG+RFHP V LS + L
Sbjct: 71 IETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLG 130
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
KN+ + GG KGG +PK S+NE+++ + + NE+ IG D+PA D+G
Sbjct: 131 FEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIG 190
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXX 221
+ + ++ Y N + G +TGK + GGS R +ATG G+
Sbjct: 191 VGGREIGYLYGQYKKIVN-SFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIP 249
Query: 222 XXXXXXXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281
G GNV K++ + D +Y PNGF L+ F +
Sbjct: 250 VEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLE----FLIDL 305
Query: 282 KDFNEG---EKINDS---KEF-----WSIPCDILIPAAIEDQITINNANNVTAK---IIL 327
K+ +G E +N S K F W +PC + P A ++ + ++ A + ++
Sbjct: 306 KEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVG 365
Query: 328 EGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNN 387
EGAN P+T +A ++ + II P NAGGV +S E QN WT + ++ +L
Sbjct: 366 EGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKE 425
Query: 388 IICNAFDAIWE--LANTK-KVSLRTAAFIIGCTRVLQAHKTRG 427
I+ N F A E L TK K L+ A I G +V +++ +G
Sbjct: 426 IMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQG 468
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 51/375 (13%)
Query: 65 VFHYEGYRVQHNILR------GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIP 114
V ++ H ++R GP GG R L++ + L+G MT+K A N+P
Sbjct: 14 VTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLP 73
Query: 115 YGGAKGGIRV-NPKN-LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMD 172
GG K I + P++ + + R+ R + I + G PDV T+ M + D
Sbjct: 74 MGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLND 131
Query: 173 TYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQG 231
T V G+ + GG+ T GVF + QG
Sbjct: 132 TTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG 182
Query: 232 FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 291
G VG A+L +AGA+++ D + + G
Sbjct: 183 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHTAV 222
Query: 292 DSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILA 350
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+ A
Sbjct: 223 ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYA 282
Query: 351 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTA 410
PD + NAGG I V L W+E ++ R I + + ++E+++ V+ A
Sbjct: 283 PDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEA 336
Query: 411 AFIIGCTRVLQAHKT 425
A + R +A T
Sbjct: 337 ARTLAGRRAREASTT 351
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 51/375 (13%)
Query: 65 VFHYEGYRVQHNILR------GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIP 114
V ++ H ++R GP GG R L++ + L+G MT+K A N+P
Sbjct: 14 VTRFDSMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLP 73
Query: 115 YGGAKGGIRV-NPKN-LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMD 172
GG K I + P++ + + R+ R + I + G PDV T+ M + D
Sbjct: 74 MGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLND 131
Query: 173 TYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQG 231
T V G+ + GG+ T GVF + QG
Sbjct: 132 TTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG 182
Query: 232 FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 291
G VG A+L +AGA+++ D + + G
Sbjct: 183 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHTAV 222
Query: 292 DSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILA 350
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+ A
Sbjct: 223 ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYA 282
Query: 351 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTA 410
PD + NAGG I V L W+E ++ R I + + ++E+++ V+ A
Sbjct: 283 PDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEA 336
Query: 411 AFIIGCTRVLQAHKT 425
A + R +A T
Sbjct: 337 ARTLAGRRAREASTT 351
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 51/375 (13%)
Query: 65 VFHYEGYRVQHNILR------GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIP 114
V ++ H ++R GP GG R L++ + L+G MT+K A N+P
Sbjct: 15 VTRFDSMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLP 74
Query: 115 YGGAKGGIRV-NPKN-LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMD 172
GG K I + P++ + + R+ R + I + G PDV T+ M + D
Sbjct: 75 MGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLND 132
Query: 173 TYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQG 231
T V G+ + GG+ T GVF + QG
Sbjct: 133 TTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG 183
Query: 232 FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 291
G VG A+L +AGA+++ D + + G
Sbjct: 184 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHTAV 223
Query: 292 DSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILA 350
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+ A
Sbjct: 224 ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYA 283
Query: 351 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTA 410
PD + NAGG I V L W+E ++ R I + + ++E+++ V+ A
Sbjct: 284 PDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEA 337
Query: 411 AFIIGCTRVLQAHKT 425
A + R +A T
Sbjct: 338 ARTLAGRRAREASTT 352
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 51/375 (13%)
Query: 65 VFHYEGYRVQHNILR------GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIP 114
V ++ H ++R GP GG R L++ + L+G MT+K A N+P
Sbjct: 14 VTRFDSMTGAHFVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLP 73
Query: 115 YGGAKGGIRV-NPKN-LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMD 172
GG K I + P++ + + R+ R + I + G PDV T+ M + D
Sbjct: 74 MGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLND 131
Query: 173 TYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQG 231
T V G+ + GG+ T GVF + QG
Sbjct: 132 TTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG 182
Query: 232 FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 291
G VG A+L +AGA+++ D + + G
Sbjct: 183 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHTAV 222
Query: 292 DSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILA 350
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+ A
Sbjct: 223 ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYA 282
Query: 351 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTA 410
PD + NAGG I V L W+E ++ R I + + ++E+++ V+ A
Sbjct: 283 PDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEA 336
Query: 411 AFIIGCTRVLQAHKT 425
A + R +A T
Sbjct: 337 ARTLAGRRAREASTT 351
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 139/354 (39%), Gaps = 45/354 (12%)
Query: 80 GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIPYGGAKGGIRV-NPKN-LSNNE 133
GP GG R L++ + L+G MT+K A N+P GG K I + P++ + +
Sbjct: 35 GPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPST 94
Query: 134 LMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISI 193
R+ R + I + G PDV T+ M + DT V G+ +
Sbjct: 95 WARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE---------FVFGRSLER 143
Query: 194 GGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVA 252
GG+ T GVF + QG G VG A+L +AGA+++
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLV 203
Query: 253 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 312
D + + G ++ S PCD+ P A+
Sbjct: 204 ADTDTERVAHAVAL--------------------GHTAVALEDVLSTPCDVFAPCAMGGV 243
Query: 313 ITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 371
IT A + ++ AN EA DIL +GI+ APD + NAGG I V
Sbjct: 244 ITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREV--- 300
Query: 372 SNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKT 425
L W+E ++ R I + + ++E+++ V+ AA + R +A T
Sbjct: 301 --LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREASTT 351
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 51/375 (13%)
Query: 65 VFHYEGYRVQHNILR------GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIP 114
V ++ H ++R GP GG R L++ + L+G MT+K A N+P
Sbjct: 15 VTRFDSKTGAHFVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLP 74
Query: 115 YGGAKGGIRV-NPKN-LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMD 172
GG K I + P++ + + R+ R + I + G PDV T+ M + D
Sbjct: 75 MGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLND 132
Query: 173 TYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQG 231
T V G+ + GG+ T GVF + QG
Sbjct: 133 TTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG 183
Query: 232 FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 291
G VG A+L +AGA+++ D + + G
Sbjct: 184 LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL--------------------GHTAV 223
Query: 292 DSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILA 350
++ S PCD+ P A+ IT A + ++ AN EA DIL +GI+ A
Sbjct: 224 ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYA 283
Query: 351 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTA 410
PD + NAGG I V L W+E ++ R I + + ++E+++ V+ A
Sbjct: 284 PDFVANAGGAIHLVGREV-----LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEA 337
Query: 411 AFIIGCTRVLQAHKT 425
A + R +A T
Sbjct: 338 ARTLAGRRAREASTT 352
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 139/354 (39%), Gaps = 45/354 (12%)
Query: 80 GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIPYGGAKGGIRV-NPKN-LSNNE 133
GP GG R L++ + L+G MT+K A N+P GG K I + P++ + +
Sbjct: 36 GPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPST 95
Query: 134 LMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISI 193
R+ R + I + G PDV T+ M + DT V G+ +
Sbjct: 96 WARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE---------FVFGRSLER 144
Query: 194 GGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVA 252
GG+ T GVF + QG G VG A+L +AGA+++
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLV 204
Query: 253 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 312
D + + G ++ S PCD+ P A+
Sbjct: 205 ADTDTERVAHAVAL--------------------GHTAVALEDVLSTPCDVFAPCAMGGV 244
Query: 313 ITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 371
IT A + ++ AN EA DIL +GI+ APD + NAGG I V
Sbjct: 245 ITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREV--- 301
Query: 372 SNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKT 425
L W+E ++ R I + + ++E+++ V+ AA + R +A T
Sbjct: 302 --LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREASTT 352
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 139/354 (39%), Gaps = 45/354 (12%)
Query: 80 GPGKGGVRFHPDVTLSEIIA----LSGWMTIKNAAVNIPYGGAKGGIRV-NPKN-LSNNE 133
GP GG R L++ + L+G MT+K A N+P GG K I + P++ + +
Sbjct: 36 GPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPST 95
Query: 134 LMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISI 193
R+ R + I + G PDV T+ M + DT V G+ +
Sbjct: 96 WARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE---------FVFGRSLER 144
Query: 194 GGSFGRQKATGRGVF-IIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAGAKIVA 252
GG+ T GVF + QG G VG A+L +AGA+++
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLV 204
Query: 253 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 312
D + + G ++ S PCD+ P A+
Sbjct: 205 ADTDTERVAHAVAL--------------------GHTAVALEDVLSTPCDVFAPCAMGGV 244
Query: 313 ITINNANNVTAKIILEGANGPTTTEA-DDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 371
IT A + ++ AN EA DIL +GI+ APD + NAGG I V
Sbjct: 245 ITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREV--- 301
Query: 372 SNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKT 425
L W+E ++ R I + + ++E+++ V+ AA + R +A T
Sbjct: 302 --LGWSESVVHERA-VAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREASTT 352
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 116/295 (39%), Gaps = 42/295 (14%)
Query: 75 HNILRGPGKGGVRF----HPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLS 130
H+ GP GG R + + + + L+ MT KNAA + GG K I NPK
Sbjct: 32 HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDK 91
Query: 131 NNELMRLTRRYTNEISSIIGLN-KDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGK 189
N+E+ R RY I GLN + I A DVGT MD + + +Y VTG
Sbjct: 92 NDEMFRAFGRY------IEGLNGRYITAEDVGT----TEADMDLINLETDY-----VTGT 136
Query: 190 PISIGGSFGRQKATGRGVF--IIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAG 247
G S T G++ + QG GNV + G
Sbjct: 137 SAGAGSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEG 196
Query: 248 AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPA 307
AK++ I D N +Q R++ F G E +S DI P
Sbjct: 197 AKLI-ITD----------INEEAVQ------RAVDAF--GATAVGINEIYSQEADIFAPC 237
Query: 308 AIEDQITINNANNVTAKIILEGANGP-TTTEADDILRDKGIILAPDVITNAGGVI 361
A+ I + AK+I AN T D++ + GI+ APD + N+GGVI
Sbjct: 238 ALGAIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGIVYAPDYVINSGGVI 292
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 133/361 (36%), Gaps = 51/361 (14%)
Query: 75 HNILRGPGKGGVRF----HPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLS 130
H+ GP GG R + + + + L+ MT KNAA + GG K I +P
Sbjct: 32 HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 131 NNELMRLTRRYTNEISSIIGLN-KDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGK 189
N ++ R R+ I GLN + I A DVGT + M D + +Y VTG
Sbjct: 92 NEDMFRALGRF------IQGLNGRYITAEDVGTTVDDM----DLIHQETDY-----VTGI 136
Query: 190 PISIGGSFGRQKATGRGVF--IIGXXXXXXXXXXXXXXXXXXQGFGNVGSVAANLFFKAG 247
+ G S T GV+ + QG GNV G
Sbjct: 137 SPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEG 196
Query: 248 AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPA 307
AK+V +K + S EG + + CDI P
Sbjct: 197 AKLVVTDVNKAAV-------------------SAAVAEEGADAVAPNAIYGVTCDIFAPC 237
Query: 308 AIEDQITINNANNVTAKIILEGA-NGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFE 366
A+ + + AK+I A N L + GI+ APD + NAGGVI
Sbjct: 238 ALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVI----- 292
Query: 367 WVQNLSNLLWTEQEIN-LRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKT 425
N+++ L+ ++ + I ++ + I+ ++ V AA + R+ + K
Sbjct: 293 ---NVADELYGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAKA 349
Query: 426 R 426
R
Sbjct: 350 R 350
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 231 GFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 269
G G VG V+A F + GA + I D+ I N IP
Sbjct: 9 GIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIP 47
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 231 GFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278
G G++GS A +F GAK++A YN P+ + ++T+T
Sbjct: 155 GVGHIGSAVAEIFSAMGAKVIAYD----VAYN------PEFEPFLTYT 192
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 55 DVPIEHDNGEVFHYEGYRVQHNILRGP-GKGGVRFHPDVTLSEI-IALSGWMTIKNAAVN 112
+P++ EV +Y H GP G GG+ H D L EI GW +I A
Sbjct: 201 SLPLDFSRLEVDYYA--FTGHKWFAGPAGVGGLYIHGDC-LGEINPTYVGWRSITYGAKG 257
Query: 113 IPYGGAKGGIR 123
P G A+GG R
Sbjct: 258 EPTGWAEGGKR 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,941,130
Number of Sequences: 62578
Number of extensions: 560974
Number of successful extensions: 1304
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 53
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)