Query psy8193
Match_columns 428
No_of_seqs 260 out of 1633
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 2E-131 4E-136 1013.6 46.2 409 18-428 1-409 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 5E-131 1E-135 994.7 43.1 409 19-428 2-410 (411)
3 PRK14030 glutamate dehydrogena 100.0 8E-130 2E-134 1006.1 45.0 413 14-428 14-444 (445)
4 PRK09414 glutamate dehydrogena 100.0 6E-126 1E-130 980.1 44.1 412 15-428 19-444 (445)
5 PRK14031 glutamate dehydrogena 100.0 3E-123 6E-128 958.2 43.4 412 15-428 15-443 (444)
6 PTZ00079 NADP-specific glutama 100.0 1E-122 3E-127 951.5 44.0 412 15-428 26-453 (454)
7 KOG2250|consensus 100.0 3E-105 6E-110 811.8 32.3 385 41-427 67-482 (514)
8 PTZ00324 glutamate dehydrogena 100.0 3.8E-84 8.3E-89 708.8 38.4 374 29-417 453-912 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 4.5E-73 9.8E-78 549.1 25.4 241 187-428 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 2.1E-65 4.6E-70 495.1 21.5 233 194-427 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 4.2E-62 9.1E-67 467.7 25.6 226 194-420 1-226 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 6E-61 1.3E-65 456.7 22.8 217 202-420 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 1.9E-48 4.2E-53 342.9 12.8 130 48-177 1-130 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 1E-44 2.2E-49 341.3 21.7 195 200-420 2-199 (200)
15 smart00839 ELFV_dehydrog Gluta 100.0 2.2E-30 4.8E-35 219.2 8.7 100 301-403 3-102 (102)
16 COG2902 NAD-specific glutamate 99.9 4.7E-25 1E-29 245.1 23.3 316 30-370 754-1162(1592)
17 PF05088 Bac_GDH: Bacterial NA 99.9 1.6E-24 3.5E-29 249.4 24.8 315 30-367 692-1097(1528)
18 PRK08374 homoserine dehydrogen 99.4 1.4E-12 2.9E-17 132.4 8.5 169 225-405 3-205 (336)
19 PRK06392 homoserine dehydrogen 99.3 7E-12 1.5E-16 126.7 9.5 84 225-311 1-92 (326)
20 PRK06270 homoserine dehydrogen 99.0 1.3E-09 2.8E-14 110.9 12.0 176 225-405 3-209 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.7 1.4E-07 3.1E-12 77.0 9.6 84 202-330 1-86 (86)
22 PRK06813 homoserine dehydrogen 98.4 1.2E-06 2.5E-11 89.6 10.0 174 225-405 3-206 (346)
23 PLN02700 homoserine dehydrogen 98.4 7.8E-07 1.7E-11 91.6 8.6 177 223-405 2-223 (377)
24 PF00670 AdoHcyase_NAD: S-aden 98.3 4.6E-06 1E-10 76.3 9.1 90 216-326 15-105 (162)
25 COG0460 ThrA Homoserine dehydr 98.2 6.2E-06 1.3E-10 83.4 8.7 179 223-416 2-217 (333)
26 cd01065 NAD_bind_Shikimate_DH 98.1 9.5E-05 2.1E-09 65.7 14.1 129 209-351 4-137 (155)
27 PRK09436 thrA bifunctional asp 98.0 2.1E-05 4.5E-10 88.8 9.6 187 212-405 453-665 (819)
28 TIGR02853 spore_dpaA dipicolin 97.9 0.0001 2.3E-09 73.5 11.1 126 200-350 130-259 (287)
29 PRK09599 6-phosphogluconate de 97.8 0.00044 9.5E-09 69.1 14.7 169 225-414 1-210 (301)
30 PRK09466 metL bifunctional asp 97.8 6.7E-05 1.4E-09 84.6 9.0 175 221-405 455-659 (810)
31 PRK05476 S-adenosyl-L-homocyst 97.7 0.0001 2.3E-09 77.2 8.5 109 198-330 189-299 (425)
32 PRK08306 dipicolinate synthase 97.7 0.00029 6.2E-09 70.6 10.6 126 200-350 131-260 (296)
33 PTZ00075 Adenosylhomocysteinas 97.6 0.00018 3.9E-09 76.2 8.7 108 204-332 233-343 (476)
34 cd05311 NAD_bind_2_malic_enz N 97.5 0.00084 1.8E-08 64.7 11.6 137 203-348 4-145 (226)
35 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00039 8.5E-09 72.8 9.9 109 201-334 182-293 (413)
36 PF03447 NAD_binding_3: Homose 97.5 5.6E-05 1.2E-09 64.8 3.0 90 231-361 1-95 (117)
37 PRK15438 erythronate-4-phospha 97.4 0.0047 1E-07 64.1 15.3 163 154-356 61-236 (378)
38 COG0373 HemA Glutamyl-tRNA red 97.3 0.004 8.6E-08 65.1 14.0 116 204-337 158-282 (414)
39 PLN02494 adenosylhomocysteinas 97.3 0.00089 1.9E-08 71.0 9.1 114 201-338 234-351 (477)
40 PF03446 NAD_binding_2: NAD bi 97.3 0.00059 1.3E-08 62.1 6.8 114 225-360 2-124 (163)
41 TIGR00936 ahcY adenosylhomocys 97.3 0.00084 1.8E-08 70.1 8.6 119 202-344 176-299 (406)
42 PF01488 Shikimate_DH: Shikima 97.2 0.00088 1.9E-08 59.2 6.9 103 220-337 8-117 (135)
43 COG0281 SfcA Malic enzyme [Ene 97.2 0.0025 5.5E-08 66.1 10.7 125 198-334 173-303 (432)
44 PRK07574 formate dehydrogenase 97.2 0.0043 9.3E-08 64.5 12.1 108 221-348 189-304 (385)
45 PRK09310 aroDE bifunctional 3- 97.1 0.006 1.3E-07 65.1 13.3 155 203-393 315-470 (477)
46 PRK13529 malate dehydrogenase; 97.1 0.013 2.9E-07 63.2 15.8 185 129-332 218-419 (563)
47 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0067 1.4E-07 56.0 11.8 96 198-333 22-119 (168)
48 PF02826 2-Hacid_dh_C: D-isome 97.1 0.0015 3.2E-08 60.4 7.4 108 219-347 31-146 (178)
49 TIGR01035 hemA glutamyl-tRNA r 97.1 0.023 4.9E-07 59.7 17.0 150 157-338 126-286 (417)
50 PLN03129 NADP-dependent malic 97.1 0.012 2.5E-07 63.9 15.0 179 129-332 243-438 (581)
51 PLN03139 formate dehydrogenase 97.1 0.0053 1.1E-07 63.9 11.9 109 220-348 195-311 (386)
52 PRK12861 malic enzyme; Reviewe 97.1 0.0071 1.5E-07 67.7 13.5 178 135-346 119-304 (764)
53 PRK13243 glyoxylate reductase; 97.1 0.007 1.5E-07 61.7 12.4 107 219-347 145-259 (333)
54 PRK12549 shikimate 5-dehydroge 97.0 0.023 5E-07 56.6 15.6 130 204-350 111-247 (284)
55 PRK14175 bifunctional 5,10-met 97.0 0.0044 9.6E-08 61.9 10.3 95 199-333 137-233 (286)
56 PRK13302 putative L-aspartate 97.0 0.0019 4.2E-08 63.9 7.7 112 222-351 4-122 (271)
57 TIGR00872 gnd_rel 6-phosphoglu 97.0 0.0023 5.1E-08 63.9 8.4 168 225-413 1-207 (298)
58 PRK00257 erythronate-4-phospha 97.0 0.0057 1.2E-07 63.5 11.4 53 203-256 95-147 (381)
59 PRK00045 hemA glutamyl-tRNA re 97.0 0.021 4.6E-07 59.9 15.8 110 211-337 170-288 (423)
60 PRK07232 bifunctional malic en 97.0 0.0071 1.5E-07 67.7 12.4 122 198-332 159-286 (752)
61 cd05312 NAD_bind_1_malic_enz N 97.0 0.0044 9.5E-08 61.6 9.6 123 202-332 3-142 (279)
62 PRK13304 L-aspartate dehydroge 97.0 0.0017 3.8E-08 63.9 6.7 107 225-350 2-117 (265)
63 PRK12490 6-phosphogluconate de 96.9 0.025 5.5E-07 56.5 14.8 168 226-414 2-209 (299)
64 PF03807 F420_oxidored: NADP o 96.9 0.0018 3.8E-08 53.1 5.4 87 226-331 1-95 (96)
65 PTZ00142 6-phosphogluconate de 96.9 0.022 4.8E-07 60.8 15.0 175 225-414 2-218 (470)
66 cd01078 NAD_bind_H4MPT_DH NADP 96.9 0.017 3.7E-07 53.7 12.5 125 202-338 6-138 (194)
67 cd00762 NAD_bind_malic_enz NAD 96.9 0.0034 7.4E-08 61.6 8.0 122 202-332 3-143 (254)
68 TIGR00507 aroE shikimate 5-deh 96.9 0.024 5.1E-07 55.8 14.0 129 203-350 100-234 (270)
69 COG0111 SerA Phosphoglycerate 96.9 0.0088 1.9E-07 60.8 11.2 108 219-347 137-252 (324)
70 PRK15461 NADH-dependent gamma- 96.8 0.044 9.6E-07 54.7 15.9 167 226-414 3-206 (296)
71 COG1023 Gnd Predicted 6-phosph 96.8 0.011 2.4E-07 57.5 10.7 167 226-413 2-208 (300)
72 PRK00676 hemA glutamyl-tRNA re 96.8 0.015 3.2E-07 59.5 12.3 139 157-333 121-264 (338)
73 PRK00258 aroE shikimate 5-dehy 96.8 0.027 5.8E-07 55.8 13.7 129 203-350 105-241 (278)
74 PLN02928 oxidoreductase family 96.8 0.027 5.8E-07 57.8 14.0 124 220-354 155-289 (347)
75 TIGR01327 PGDH D-3-phosphoglyc 96.7 0.018 3.9E-07 62.2 12.9 157 219-397 133-301 (525)
76 PRK11559 garR tartronate semia 96.7 0.056 1.2E-06 53.5 15.5 169 225-414 3-207 (296)
77 TIGR01505 tartro_sem_red 2-hyd 96.7 0.061 1.3E-06 53.2 15.6 168 226-415 1-205 (291)
78 PRK13940 glutamyl-tRNA reducta 96.7 0.065 1.4E-06 56.3 16.3 148 156-337 126-281 (414)
79 PRK00048 dihydrodipicolinate r 96.7 0.0032 7E-08 61.7 6.2 109 225-355 2-119 (257)
80 PRK08410 2-hydroxyacid dehydro 96.7 0.019 4E-07 58.0 11.8 111 220-355 141-259 (311)
81 PRK06932 glycerate dehydrogena 96.7 0.036 7.8E-07 56.0 13.9 102 221-348 144-253 (314)
82 PF01113 DapB_N: Dihydrodipico 96.7 0.00066 1.4E-08 59.2 1.1 93 225-329 1-98 (124)
83 COG0499 SAM1 S-adenosylhomocys 96.7 0.0051 1.1E-07 62.8 7.4 108 197-328 185-293 (420)
84 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.011 2.4E-07 59.4 10.0 109 210-337 165-281 (311)
85 PLN02350 phosphogluconate dehy 96.6 0.036 7.9E-07 59.4 14.0 174 225-414 7-224 (493)
86 PF03949 Malic_M: Malic enzyme 96.5 0.0062 1.4E-07 59.8 7.0 124 203-332 4-143 (255)
87 PRK06349 homoserine dehydrogen 96.5 0.0063 1.4E-07 64.0 7.4 160 224-405 3-188 (426)
88 PRK15409 bifunctional glyoxyla 96.5 0.028 6E-07 57.1 11.6 107 219-347 140-255 (323)
89 PLN00203 glutamyl-tRNA reducta 96.5 0.12 2.5E-06 56.0 16.9 114 210-338 251-378 (519)
90 COG5322 Predicted dehydrogenas 96.5 0.033 7.2E-07 55.0 11.4 54 201-254 144-198 (351)
91 PTZ00317 NADP-dependent malic 96.4 0.076 1.6E-06 57.5 14.9 181 129-332 220-418 (559)
92 PF10727 Rossmann-like: Rossma 96.4 0.0036 7.8E-08 55.2 4.1 74 223-314 9-82 (127)
93 PRK15059 tartronate semialdehy 96.4 0.12 2.7E-06 51.5 15.4 166 226-414 2-204 (292)
94 PLN02520 bifunctional 3-dehydr 96.4 0.053 1.2E-06 58.7 13.7 132 203-350 352-495 (529)
95 TIGR01692 HIBADH 3-hydroxyisob 96.4 0.088 1.9E-06 52.2 14.3 166 229-415 1-202 (288)
96 TIGR01532 E4PD_g-proteo D-eryt 96.3 0.029 6.3E-07 57.1 10.8 93 226-329 1-120 (325)
97 TIGR01809 Shik-DH-AROM shikima 96.3 0.056 1.2E-06 53.7 12.3 130 204-350 107-251 (282)
98 TIGR00873 gnd 6-phosphoglucona 96.3 0.013 2.8E-07 62.5 8.2 172 227-414 2-215 (467)
99 PRK06436 glycerate dehydrogena 96.2 0.015 3.3E-07 58.5 8.0 102 221-347 119-228 (303)
100 PRK12862 malic enzyme; Reviewe 96.2 0.034 7.4E-07 62.6 11.4 122 198-332 167-294 (763)
101 COG0057 GapA Glyceraldehyde-3- 96.1 0.025 5.5E-07 57.3 8.8 96 225-330 2-122 (335)
102 PRK13581 D-3-phosphoglycerate 96.1 0.068 1.5E-06 57.8 12.8 107 219-347 135-249 (526)
103 PF01408 GFO_IDH_MocA: Oxidore 96.1 0.031 6.7E-07 47.3 8.0 107 225-349 1-116 (120)
104 PRK14192 bifunctional 5,10-met 96.0 0.033 7.3E-07 55.6 9.3 52 200-256 139-191 (283)
105 PRK06487 glycerate dehydrogena 96.0 0.038 8.2E-07 55.9 9.8 101 220-347 144-252 (317)
106 COG1052 LdhA Lactate dehydroge 96.0 0.079 1.7E-06 53.9 11.9 109 218-348 140-256 (324)
107 PRK06141 ornithine cyclodeamin 96.0 0.11 2.4E-06 52.4 12.9 117 222-352 123-242 (314)
108 TIGR00518 alaDH alanine dehydr 96.0 0.039 8.4E-07 57.1 9.8 91 222-328 165-265 (370)
109 PRK12480 D-lactate dehydrogena 96.0 0.074 1.6E-06 54.2 11.5 104 220-347 142-253 (330)
110 PRK11790 D-3-phosphoglycerate 95.9 0.093 2E-06 55.0 12.5 105 219-347 146-258 (409)
111 PRK09424 pntA NAD(P) transhydr 95.9 0.021 4.6E-07 61.4 7.5 58 208-276 139-206 (509)
112 PRK11064 wecC UDP-N-acetyl-D-m 95.9 0.34 7.4E-06 50.9 16.3 30 225-255 4-33 (415)
113 TIGR01546 GAPDH-II_archae glyc 95.9 0.02 4.3E-07 58.4 6.9 91 227-329 1-106 (333)
114 PRK06476 pyrroline-5-carboxyla 95.9 0.064 1.4E-06 52.2 10.2 171 225-415 1-194 (258)
115 TIGR00465 ilvC ketol-acid redu 95.8 0.24 5.2E-06 50.2 14.6 34 222-255 1-34 (314)
116 PRK15057 UDP-glucose 6-dehydro 95.8 0.12 2.7E-06 53.7 12.9 180 225-417 1-235 (388)
117 PRK13301 putative L-aspartate 95.8 0.018 3.8E-07 57.0 6.0 87 224-329 2-93 (267)
118 PRK15469 ghrA bifunctional gly 95.7 0.037 8.1E-07 55.9 8.3 106 221-348 133-246 (312)
119 PRK03659 glutathione-regulated 95.7 0.086 1.9E-06 57.9 11.7 139 225-389 401-549 (601)
120 COG0169 AroE Shikimate 5-dehyd 95.7 0.25 5.5E-06 49.4 13.9 131 204-350 108-246 (283)
121 PRK12749 quinate/shikimate deh 95.7 0.3 6.5E-06 48.8 14.3 134 204-351 108-254 (288)
122 PRK12548 shikimate 5-dehydroge 95.5 0.26 5.7E-06 49.1 13.4 134 204-350 110-256 (289)
123 TIGR00561 pntA NAD(P) transhyd 95.5 0.069 1.5E-06 57.5 9.5 34 222-256 162-195 (511)
124 PRK12491 pyrroline-5-carboxyla 95.5 0.14 3.1E-06 50.6 11.2 115 225-358 3-127 (272)
125 PRK04207 glyceraldehyde-3-phos 95.4 0.054 1.2E-06 55.4 8.1 93 225-330 2-110 (341)
126 PRK14982 acyl-ACP reductase; P 95.4 0.09 2E-06 53.9 9.5 116 202-338 133-255 (340)
127 PF00044 Gp_dh_N: Glyceraldehy 95.3 0.071 1.5E-06 48.4 7.7 43 225-275 1-44 (151)
128 TIGR00036 dapB dihydrodipicoli 95.3 0.049 1.1E-06 53.7 7.2 99 225-337 2-105 (266)
129 PRK14194 bifunctional 5,10-met 95.3 0.046 9.9E-07 55.1 6.9 52 200-256 139-191 (301)
130 PRK08223 hypothetical protein; 95.2 0.014 3.1E-07 58.3 3.2 37 221-257 24-60 (287)
131 PF02882 THF_DHG_CYH_C: Tetrah 95.2 0.058 1.2E-06 49.5 6.9 84 199-320 15-100 (160)
132 PRK13303 L-aspartate dehydroge 95.2 0.046 9.9E-07 53.9 6.7 108 225-350 2-117 (265)
133 PRK07679 pyrroline-5-carboxyla 95.2 0.38 8.3E-06 47.4 13.2 101 223-342 2-111 (279)
134 KOG0068|consensus 95.2 0.042 9.2E-07 55.9 6.3 104 218-343 140-251 (406)
135 PRK14027 quinate/shikimate deh 95.2 0.4 8.8E-06 47.8 13.3 129 204-350 111-249 (283)
136 PRK14618 NAD(P)H-dependent gly 95.1 0.72 1.6E-05 46.4 15.0 112 224-348 4-130 (328)
137 PRK12550 shikimate 5-dehydroge 95.1 0.54 1.2E-05 46.7 13.8 122 204-350 107-236 (272)
138 PLN02858 fructose-bisphosphate 95.1 0.44 9.4E-06 57.3 15.3 168 225-414 325-532 (1378)
139 COG1748 LYS9 Saccharopine dehy 95.0 0.067 1.4E-06 55.7 7.5 128 225-369 2-138 (389)
140 PRK10792 bifunctional 5,10-met 95.0 0.055 1.2E-06 54.1 6.6 91 200-330 139-231 (285)
141 PRK07417 arogenate dehydrogena 95.0 0.25 5.5E-06 48.7 11.3 70 225-313 1-70 (279)
142 PRK14176 bifunctional 5,10-met 95.0 0.057 1.2E-06 54.0 6.7 52 200-256 144-196 (287)
143 PRK07340 ornithine cyclodeamin 95.0 0.29 6.2E-06 49.3 11.7 109 222-346 123-234 (304)
144 PRK07680 late competence prote 94.9 0.053 1.1E-06 53.3 6.2 111 226-353 2-119 (273)
145 KOG1370|consensus 94.9 0.04 8.7E-07 55.3 5.2 79 222-322 212-292 (434)
146 COG2084 MmsB 3-hydroxyisobutyr 94.9 0.097 2.1E-06 52.4 8.0 168 225-413 1-205 (286)
147 PRK08328 hypothetical protein; 94.9 0.024 5.2E-07 54.8 3.5 120 221-350 24-147 (231)
148 PRK14189 bifunctional 5,10-met 94.8 0.067 1.5E-06 53.5 6.6 53 199-256 137-190 (285)
149 PLN02858 fructose-bisphosphate 94.7 0.62 1.3E-05 56.0 15.5 171 223-415 3-213 (1378)
150 PLN02819 lysine-ketoglutarate 94.7 0.063 1.4E-06 62.3 7.0 118 223-354 568-704 (1042)
151 smart00846 Gp_dh_N Glyceraldeh 94.7 0.39 8.4E-06 43.5 10.6 32 225-256 1-33 (149)
152 cd00755 YgdL_like Family of ac 94.7 0.023 4.9E-07 55.1 2.8 35 222-256 9-43 (231)
153 PRK06046 alanine dehydrogenase 94.6 0.33 7.1E-06 49.3 11.3 116 223-353 128-246 (326)
154 PLN02712 arogenate dehydrogena 94.6 0.1 2.2E-06 58.2 7.9 113 218-350 363-481 (667)
155 PRK15116 sulfur acceptor prote 94.6 0.017 3.7E-07 57.2 1.7 37 221-257 27-63 (268)
156 PLN02272 glyceraldehyde-3-phos 94.5 0.41 8.9E-06 50.4 11.9 131 225-369 86-245 (421)
157 PF13241 NAD_binding_7: Putati 94.5 0.051 1.1E-06 45.7 4.3 36 220-255 3-38 (103)
158 PRK14188 bifunctional 5,10-met 94.5 0.13 2.8E-06 51.8 7.8 53 199-256 137-190 (296)
159 TIGR02355 moeB molybdopterin s 94.5 0.021 4.5E-07 55.6 2.2 36 221-256 21-56 (240)
160 COG1712 Predicted dinucleotide 94.5 0.078 1.7E-06 51.3 5.9 79 225-321 1-81 (255)
161 PRK14179 bifunctional 5,10-met 94.4 0.11 2.4E-06 52.0 7.1 53 199-256 137-190 (284)
162 TIGR02356 adenyl_thiF thiazole 94.4 0.084 1.8E-06 49.9 6.0 37 221-257 18-54 (202)
163 PLN02358 glyceraldehyde-3-phos 94.4 0.45 9.7E-06 48.8 11.6 33 225-257 6-39 (338)
164 PRK14173 bifunctional 5,10-met 94.4 0.14 3E-06 51.3 7.7 53 199-256 134-187 (287)
165 PRK08300 acetaldehyde dehydrog 94.4 0.082 1.8E-06 53.3 6.1 114 223-353 3-132 (302)
166 PRK14191 bifunctional 5,10-met 94.4 0.12 2.6E-06 51.7 7.2 53 199-256 136-189 (285)
167 PRK05690 molybdopterin biosynt 94.3 0.036 7.8E-07 54.1 3.4 37 221-257 29-65 (245)
168 PRK12475 thiamine/molybdopteri 94.3 0.094 2E-06 53.6 6.5 37 221-257 21-57 (338)
169 PF02737 3HCDH_N: 3-hydroxyacy 94.3 0.062 1.4E-06 49.9 4.8 29 226-255 1-29 (180)
170 PRK06718 precorrin-2 dehydroge 94.3 0.073 1.6E-06 50.4 5.3 82 220-317 6-87 (202)
171 TIGR03026 NDP-sugDHase nucleot 94.3 0.75 1.6E-05 48.0 13.3 30 225-255 1-30 (411)
172 COG2085 Predicted dinucleotide 94.2 0.12 2.6E-06 49.4 6.5 91 225-332 2-95 (211)
173 PRK13535 erythrose 4-phosphate 94.2 0.37 8.1E-06 49.3 10.5 130 225-369 2-164 (336)
174 TIGR01534 GAPDH-I glyceraldehy 94.2 0.52 1.1E-05 48.1 11.5 31 226-256 1-34 (327)
175 PRK05479 ketol-acid reductoiso 94.1 0.085 1.8E-06 53.9 5.7 32 221-252 14-45 (330)
176 PRK14180 bifunctional 5,10-met 94.1 0.15 3.2E-06 51.0 7.2 84 199-320 137-222 (282)
177 PRK15425 gapA glyceraldehyde-3 94.1 0.67 1.5E-05 47.4 12.0 129 225-369 3-160 (331)
178 PRK14166 bifunctional 5,10-met 94.0 0.15 3.2E-06 51.0 7.0 83 200-320 137-221 (282)
179 PRK03562 glutathione-regulated 94.0 0.38 8.1E-06 53.2 10.9 112 224-355 400-521 (621)
180 PRK14851 hypothetical protein; 94.0 0.039 8.5E-07 61.4 3.2 119 221-350 40-164 (679)
181 COG1648 CysG Siroheme synthase 93.8 0.16 3.5E-06 48.6 6.7 50 220-279 8-57 (210)
182 PRK11579 putative oxidoreducta 93.8 0.26 5.7E-06 50.0 8.6 106 225-350 5-119 (346)
183 PRK06153 hypothetical protein; 93.8 0.019 4E-07 59.6 0.2 36 221-256 173-208 (393)
184 cd05212 NAD_bind_m-THF_DH_Cycl 93.8 0.26 5.6E-06 44.2 7.5 51 201-256 9-60 (140)
185 PRK07688 thiamine/molybdopteri 93.8 0.12 2.6E-06 52.9 6.0 37 221-257 21-57 (339)
186 PRK06719 precorrin-2 dehydroge 93.7 0.091 2E-06 47.8 4.5 34 220-253 9-42 (157)
187 PLN03096 glyceraldehyde-3-phos 93.7 0.63 1.4E-05 48.7 11.2 32 225-256 61-95 (395)
188 PRK14187 bifunctional 5,10-met 93.7 0.19 4.1E-06 50.6 7.1 83 200-320 140-224 (294)
189 PRK08618 ornithine cyclodeamin 93.6 0.63 1.4E-05 47.2 11.0 117 223-354 126-246 (325)
190 PF02254 TrkA_N: TrkA-N domain 93.6 0.22 4.8E-06 41.9 6.5 103 227-349 1-112 (116)
191 PLN02616 tetrahydrofolate dehy 93.5 0.24 5.2E-06 51.1 7.7 53 199-256 210-263 (364)
192 TIGR01915 npdG NADPH-dependent 93.4 0.17 3.7E-06 48.1 6.0 97 225-334 1-105 (219)
193 PRK03369 murD UDP-N-acetylmura 93.3 0.5 1.1E-05 50.6 10.1 34 222-256 10-43 (488)
194 cd00757 ThiF_MoeB_HesA_family 93.3 0.18 3.8E-06 48.5 6.1 37 221-257 18-54 (228)
195 PRK10669 putative cation:proto 93.3 0.2 4.4E-06 54.4 7.2 105 225-349 418-531 (558)
196 PRK07531 bifunctional 3-hydrox 93.3 0.9 2E-05 48.8 12.0 30 225-255 5-34 (495)
197 PLN02688 pyrroline-5-carboxyla 93.3 0.26 5.6E-06 48.0 7.2 65 225-309 1-70 (266)
198 COG1064 AdhP Zn-dependent alco 93.3 0.53 1.1E-05 48.3 9.6 33 223-255 166-198 (339)
199 PRK07530 3-hydroxybutyryl-CoA 93.2 0.32 6.9E-06 48.2 7.9 30 225-255 5-34 (292)
200 PRK14183 bifunctional 5,10-met 93.2 0.27 5.9E-06 49.1 7.3 53 199-256 136-189 (281)
201 PLN02256 arogenate dehydrogena 93.1 0.23 5E-06 50.0 6.9 34 221-254 33-66 (304)
202 COG0569 TrkA K+ transport syst 93.1 0.15 3.2E-06 49.1 5.2 110 225-355 1-124 (225)
203 PRK14852 hypothetical protein; 93.1 0.073 1.6E-06 61.1 3.5 119 221-350 329-453 (989)
204 cd01483 E1_enzyme_family Super 93.0 0.099 2.2E-06 46.1 3.6 31 226-256 1-31 (143)
205 TIGR02371 ala_DH_arch alanine 93.0 1 2.2E-05 45.8 11.3 118 223-355 127-247 (325)
206 PLN02897 tetrahydrofolate dehy 93.0 0.31 6.6E-06 50.0 7.5 84 199-320 193-278 (345)
207 PRK14167 bifunctional 5,10-met 93.0 0.3 6.5E-06 49.2 7.3 91 200-330 137-233 (297)
208 PF01262 AlaDh_PNT_C: Alanine 92.9 0.26 5.7E-06 45.0 6.3 34 221-255 17-50 (168)
209 COG0673 MviM Predicted dehydro 92.9 0.53 1.2E-05 47.0 9.1 110 223-349 2-121 (342)
210 PRK01438 murD UDP-N-acetylmura 92.9 1 2.2E-05 47.7 11.6 40 216-256 8-47 (480)
211 PRK09260 3-hydroxybutyryl-CoA 92.8 0.35 7.5E-06 47.9 7.5 30 225-255 2-31 (288)
212 PRK08644 thiamine biosynthesis 92.8 0.25 5.4E-06 47.2 6.2 37 221-257 25-61 (212)
213 PRK07403 glyceraldehyde-3-phos 92.8 1.1 2.5E-05 45.8 11.3 96 225-330 2-122 (337)
214 PLN02306 hydroxypyruvate reduc 92.8 0.16 3.4E-06 53.0 5.1 118 219-347 160-291 (386)
215 PRK04148 hypothetical protein; 92.7 0.44 9.4E-06 42.6 7.2 44 222-277 15-58 (134)
216 PTZ00023 glyceraldehyde-3-phos 92.7 0.85 1.8E-05 46.8 10.2 131 225-369 3-162 (337)
217 TIGR01921 DAP-DH diaminopimela 92.7 0.31 6.8E-06 49.6 7.0 34 224-257 3-37 (324)
218 PRK14177 bifunctional 5,10-met 92.7 0.37 8E-06 48.2 7.4 84 199-320 138-223 (284)
219 PRK09496 trkA potassium transp 92.6 0.43 9.4E-06 49.8 8.3 121 211-348 217-345 (453)
220 TIGR02354 thiF_fam2 thiamine b 92.6 0.3 6.5E-06 46.2 6.3 37 221-257 18-54 (200)
221 TIGR01470 cysG_Nterm siroheme 92.5 0.16 3.6E-06 48.2 4.5 35 220-254 5-39 (205)
222 cd01079 NAD_bind_m-THF_DH NAD 92.5 0.37 7.9E-06 45.7 6.8 140 200-365 33-184 (197)
223 COG0345 ProC Pyrroline-5-carbo 92.5 0.53 1.2E-05 46.7 8.2 117 225-360 2-126 (266)
224 PRK05808 3-hydroxybutyryl-CoA 92.4 0.32 6.9E-06 48.0 6.6 30 225-255 4-33 (282)
225 PRK02472 murD UDP-N-acetylmura 92.4 0.45 9.8E-06 49.8 8.1 35 221-256 2-36 (447)
226 COG1063 Tdh Threonine dehydrog 92.3 0.81 1.8E-05 46.8 9.6 72 226-309 171-247 (350)
227 COG2344 AT-rich DNA-binding pr 92.3 0.33 7.2E-06 45.8 6.1 51 204-255 65-117 (211)
228 PRK13403 ketol-acid reductoiso 92.3 0.21 4.6E-06 50.9 5.3 33 221-253 13-45 (335)
229 KOG2380|consensus 92.3 0.25 5.4E-06 50.5 5.6 33 223-256 51-83 (480)
230 PRK07729 glyceraldehyde-3-phos 92.2 1.1 2.5E-05 46.0 10.5 96 225-330 3-121 (343)
231 PF07991 IlvN: Acetohydroxy ac 92.2 0.21 4.6E-06 46.0 4.7 36 222-258 2-37 (165)
232 PRK08268 3-hydroxy-acyl-CoA de 92.2 0.45 9.8E-06 51.3 7.9 76 225-313 8-99 (507)
233 PF01118 Semialdhyde_dh: Semia 92.2 0.25 5.4E-06 42.6 4.9 73 226-309 1-75 (121)
234 PRK07877 hypothetical protein; 92.1 0.075 1.6E-06 59.6 1.9 126 221-361 104-234 (722)
235 PRK05597 molybdopterin biosynt 92.1 0.35 7.5E-06 49.8 6.6 37 221-257 25-61 (355)
236 PRK07819 3-hydroxybutyryl-CoA 92.1 0.39 8.5E-06 47.8 6.8 30 225-255 6-35 (286)
237 PRK09287 6-phosphogluconate de 92.0 1.9 4.2E-05 46.0 12.3 164 235-414 1-207 (459)
238 PRK14178 bifunctional 5,10-met 91.9 0.37 8E-06 48.1 6.3 92 199-330 131-224 (279)
239 PRK14106 murD UDP-N-acetylmura 91.9 0.78 1.7E-05 48.0 9.2 35 221-256 2-36 (450)
240 KOG0069|consensus 91.9 0.57 1.2E-05 48.0 7.7 106 218-344 156-269 (336)
241 PRK08762 molybdopterin biosynt 91.9 0.31 6.7E-06 50.4 6.0 37 221-257 132-168 (376)
242 PRK07634 pyrroline-5-carboxyla 91.7 0.4 8.7E-06 45.9 6.2 102 223-342 3-111 (245)
243 PRK05600 thiamine biosynthesis 91.7 0.25 5.4E-06 51.2 5.1 87 221-309 38-140 (370)
244 KOG0409|consensus 91.6 0.33 7.3E-06 48.8 5.6 175 221-418 32-245 (327)
245 PRK08291 ectoine utilization p 91.6 3.2 7E-05 42.1 13.0 120 223-355 131-253 (330)
246 PF00070 Pyr_redox: Pyridine n 91.6 0.77 1.7E-05 36.3 6.8 44 226-272 1-44 (80)
247 PRK11880 pyrroline-5-carboxyla 91.6 0.45 9.8E-06 46.2 6.5 89 225-333 3-97 (267)
248 PRK05472 redox-sensing transcr 91.5 0.39 8.4E-06 45.6 5.9 52 204-256 65-118 (213)
249 PRK14174 bifunctional 5,10-met 91.5 0.96 2.1E-05 45.6 8.8 53 199-256 138-195 (295)
250 COG0190 FolD 5,10-methylene-te 91.5 0.4 8.7E-06 47.8 6.0 52 200-256 136-188 (283)
251 PRK05717 oxidoreductase; Valid 91.5 0.41 8.9E-06 45.7 6.0 35 220-255 6-41 (255)
252 PLN02545 3-hydroxybutyryl-CoA 91.5 0.6 1.3E-05 46.3 7.4 30 225-255 5-34 (295)
253 PRK08229 2-dehydropantoate 2-r 91.3 3.7 8.1E-05 41.3 13.1 106 225-344 3-122 (341)
254 PRK08293 3-hydroxybutyryl-CoA 91.2 0.67 1.5E-05 45.9 7.4 30 225-255 4-33 (287)
255 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.2 0.59 1.3E-05 50.4 7.5 30 225-255 6-35 (503)
256 PLN02237 glyceraldehyde-3-phos 91.2 1.9 4E-05 45.8 10.9 132 224-369 75-239 (442)
257 TIGR03215 ac_ald_DH_ac acetald 91.1 0.39 8.4E-06 48.1 5.6 93 225-334 2-102 (285)
258 KOG2018|consensus 91.0 1.1 2.5E-05 45.4 8.6 35 221-255 71-105 (430)
259 PLN02516 methylenetetrahydrofo 91.0 0.77 1.7E-05 46.3 7.6 53 199-256 146-199 (299)
260 COG0686 Ald Alanine dehydrogen 90.9 0.37 8E-06 48.8 5.1 46 222-278 166-211 (371)
261 PRK09496 trkA potassium transp 90.9 0.48 1E-05 49.5 6.3 41 225-276 1-41 (453)
262 PRK07878 molybdopterin biosynt 90.8 0.17 3.6E-06 52.8 2.8 36 222-257 40-75 (392)
263 PRK14190 bifunctional 5,10-met 90.8 0.62 1.3E-05 46.7 6.7 52 200-256 138-190 (284)
264 cd01487 E1_ThiF_like E1_ThiF_l 90.8 0.58 1.2E-05 43.2 6.1 32 226-257 1-32 (174)
265 KOG1257|consensus 90.8 1.6 3.5E-05 46.9 10.0 177 130-334 233-427 (582)
266 PF01210 NAD_Gly3P_dh_N: NAD-d 90.8 1.2 2.6E-05 40.1 8.1 83 226-321 1-89 (157)
267 PLN02712 arogenate dehydrogena 90.7 0.52 1.1E-05 52.6 6.7 70 223-312 51-120 (667)
268 PRK08605 D-lactate dehydrogena 90.7 0.32 7E-06 49.5 4.7 106 219-347 141-255 (332)
269 PRK00066 ldh L-lactate dehydro 90.7 0.53 1.2E-05 47.6 6.2 33 223-256 5-39 (315)
270 PRK06928 pyrroline-5-carboxyla 90.6 0.62 1.3E-05 46.1 6.5 115 225-356 2-125 (277)
271 PRK14172 bifunctional 5,10-met 90.6 0.7 1.5E-05 46.1 6.8 83 200-320 138-222 (278)
272 PRK14170 bifunctional 5,10-met 90.5 0.71 1.5E-05 46.2 6.7 83 200-320 137-221 (284)
273 TIGR01202 bchC 2-desacetyl-2-h 90.3 0.86 1.9E-05 45.3 7.3 34 222-255 143-176 (308)
274 PRK06130 3-hydroxybutyryl-CoA 90.3 0.68 1.5E-05 46.2 6.5 30 225-255 5-34 (311)
275 cd01492 Aos1_SUMO Ubiquitin ac 90.3 0.39 8.6E-06 45.2 4.6 37 221-257 18-54 (197)
276 KOG0089|consensus 90.3 0.27 5.8E-06 48.7 3.5 53 200-256 146-199 (309)
277 PRK14169 bifunctional 5,10-met 90.2 0.79 1.7E-05 45.9 6.9 53 199-256 135-188 (282)
278 PRK07411 hypothetical protein; 90.2 0.51 1.1E-05 49.2 5.7 37 221-257 35-71 (390)
279 PRK06129 3-hydroxyacyl-CoA deh 90.1 1.1 2.3E-05 44.9 7.8 30 225-255 3-32 (308)
280 PF00899 ThiF: ThiF family; I 90.1 0.32 7E-06 42.5 3.6 34 224-257 2-35 (135)
281 cd08230 glucose_DH Glucose deh 90.1 2.3 5.1E-05 42.8 10.4 33 222-254 171-203 (355)
282 PRK14171 bifunctional 5,10-met 89.9 0.83 1.8E-05 45.9 6.7 54 199-257 138-192 (288)
283 PRK06522 2-dehydropantoate 2-r 89.8 1.2 2.7E-05 43.7 7.9 99 225-337 1-107 (304)
284 PRK15182 Vi polysaccharide bio 89.8 7.8 0.00017 40.9 14.3 41 223-275 5-45 (425)
285 PTZ00353 glycosomal glyceralde 89.8 3.3 7.1E-05 42.6 11.0 32 225-256 3-35 (342)
286 PRK06823 ornithine cyclodeamin 89.7 2 4.4E-05 43.5 9.4 118 223-354 127-247 (315)
287 PRK08507 prephenate dehydrogen 89.6 0.75 1.6E-05 45.2 6.2 70 225-314 1-72 (275)
288 PRK14186 bifunctional 5,10-met 89.6 0.95 2.1E-05 45.6 6.8 91 200-330 138-230 (297)
289 PF03721 UDPG_MGDP_dh_N: UDP-g 89.5 0.66 1.4E-05 43.3 5.4 30 225-255 1-30 (185)
290 PRK08289 glyceraldehyde-3-phos 89.5 5.7 0.00012 42.5 12.8 52 207-258 107-166 (477)
291 COG0771 MurD UDP-N-acetylmuram 89.4 1.3 2.9E-05 47.0 8.1 35 222-257 5-39 (448)
292 PRK07066 3-hydroxybutyryl-CoA 89.4 0.94 2E-05 46.1 6.8 30 225-255 8-37 (321)
293 PRK08955 glyceraldehyde-3-phos 89.2 5.8 0.00013 40.7 12.3 94 225-328 3-118 (334)
294 PRK14620 NAD(P)H-dependent gly 89.1 0.87 1.9E-05 45.8 6.3 78 225-313 1-84 (326)
295 COG0300 DltE Short-chain dehyd 89.1 1.5 3.2E-05 43.6 7.7 45 221-276 3-48 (265)
296 COG0677 WecC UDP-N-acetyl-D-ma 89.1 2.7 5.9E-05 44.0 9.9 119 225-353 10-155 (436)
297 PRK05579 bifunctional phosphop 89.1 1.2 2.7E-05 46.6 7.6 35 220-254 184-235 (399)
298 PF03435 Saccharop_dh: Sacchar 89.1 0.44 9.6E-06 49.0 4.3 113 227-358 1-127 (386)
299 PRK14193 bifunctional 5,10-met 89.0 1.3 2.9E-05 44.3 7.4 52 200-256 138-192 (284)
300 COG0362 Gnd 6-phosphogluconate 88.9 1.6 3.5E-05 45.6 8.0 115 225-350 4-124 (473)
301 PRK08655 prephenate dehydrogen 88.8 1 2.3E-05 47.6 6.9 88 225-331 1-93 (437)
302 PRK00094 gpsA NAD(P)H-dependen 88.8 1.3 2.8E-05 44.1 7.3 30 225-255 2-31 (325)
303 TIGR02992 ectoine_eutC ectoine 88.8 5.1 0.00011 40.6 11.7 119 223-354 128-249 (326)
304 PRK14182 bifunctional 5,10-met 88.7 1.2 2.6E-05 44.6 6.8 83 200-320 137-221 (282)
305 PTZ00082 L-lactate dehydrogena 88.6 0.46 9.9E-06 48.3 3.9 33 223-256 5-38 (321)
306 PF00056 Ldh_1_N: lactate/mala 88.5 0.83 1.8E-05 40.7 5.1 30 225-255 1-33 (141)
307 COG2130 Putative NADP-dependen 88.4 1.4 3E-05 44.6 6.9 111 201-330 132-250 (340)
308 PLN02353 probable UDP-glucose 88.2 2.5 5.4E-05 45.3 9.3 30 225-255 2-33 (473)
309 PRK05447 1-deoxy-D-xylulose 5- 87.9 1.4 3E-05 46.0 6.9 45 225-279 2-50 (385)
310 PRK07502 cyclohexadienyl dehyd 87.8 1.5 3.3E-05 43.8 7.0 71 224-312 6-78 (307)
311 PRK04690 murD UDP-N-acetylmura 87.8 0.75 1.6E-05 48.9 5.1 35 222-257 6-40 (468)
312 PRK05225 ketol-acid reductoiso 87.0 0.33 7.2E-06 51.6 1.8 31 221-251 33-63 (487)
313 PRK08265 short chain dehydroge 86.9 1.3 2.8E-05 42.6 5.8 34 221-255 3-37 (261)
314 PRK06545 prephenate dehydrogen 86.8 1 2.3E-05 46.2 5.3 30 225-255 1-30 (359)
315 PRK14806 bifunctional cyclohex 86.8 1.2 2.7E-05 49.8 6.3 112 224-354 3-123 (735)
316 PRK06182 short chain dehydroge 86.7 1.2 2.5E-05 43.1 5.4 32 223-254 2-34 (273)
317 PRK14181 bifunctional 5,10-met 86.5 1.9 4.1E-05 43.3 6.8 52 200-256 133-189 (287)
318 cd01491 Ube1_repeat1 Ubiquitin 86.4 1.7 3.7E-05 43.6 6.4 36 222-257 17-52 (286)
319 PRK06407 ornithine cyclodeamin 86.3 6.9 0.00015 39.4 10.8 117 223-352 116-235 (301)
320 PRK10206 putative oxidoreducta 86.3 1.5 3.3E-05 44.7 6.1 108 225-350 2-119 (344)
321 cd05291 HicDH_like L-2-hydroxy 86.2 1.4 3E-05 44.2 5.7 31 225-256 1-33 (306)
322 PRK14184 bifunctional 5,10-met 86.2 1.7 3.8E-05 43.5 6.3 52 200-256 137-193 (286)
323 cd01485 E1-1_like Ubiquitin ac 86.1 0.95 2.1E-05 42.6 4.2 36 222-257 17-52 (198)
324 PRK08339 short chain dehydroge 86.1 2.2 4.8E-05 41.2 6.9 35 220-255 4-39 (263)
325 COG1179 Dinucleotide-utilizing 86.1 0.77 1.7E-05 45.0 3.6 35 222-256 28-62 (263)
326 PRK08628 short chain dehydroge 86.0 1.2 2.6E-05 42.4 5.0 36 219-254 2-38 (258)
327 PTZ00431 pyrroline carboxylate 86.0 0.97 2.1E-05 44.2 4.4 106 223-354 2-116 (260)
328 smart00859 Semialdhyde_dh Semi 85.9 1.8 4E-05 36.9 5.6 31 226-256 1-33 (122)
329 cd08239 THR_DH_like L-threonin 85.5 8.3 0.00018 38.3 10.9 31 223-253 163-194 (339)
330 TIGR01832 kduD 2-deoxy-D-gluco 85.5 1.4 3.1E-05 41.5 5.2 34 221-254 2-36 (248)
331 PF13380 CoA_binding_2: CoA bi 85.4 3.4 7.4E-05 35.6 7.0 100 225-352 1-109 (116)
332 PRK06035 3-hydroxyacyl-CoA deh 85.3 2.1 4.5E-05 42.4 6.4 30 225-255 4-33 (291)
333 PRK14185 bifunctional 5,10-met 85.2 2.3 4.9E-05 42.9 6.6 54 199-257 136-194 (293)
334 PRK14168 bifunctional 5,10-met 85.2 2.2 4.7E-05 43.1 6.4 53 200-257 141-198 (297)
335 KOG0455|consensus 85.1 2 4.3E-05 42.5 5.9 178 223-405 2-209 (364)
336 PRK12742 oxidoreductase; Provi 85.0 4.6 0.0001 37.7 8.3 33 221-253 3-36 (237)
337 KOG2741|consensus 84.7 3.7 8E-05 42.2 7.9 112 223-350 5-127 (351)
338 PF02423 OCD_Mu_crystall: Orni 84.7 5.7 0.00012 40.1 9.3 118 223-355 127-249 (313)
339 PRK14619 NAD(P)H-dependent gly 84.6 1.5 3.2E-05 43.9 5.1 34 223-257 3-36 (308)
340 PRK06138 short chain dehydroge 84.5 1.6 3.6E-05 41.1 5.1 34 221-254 2-36 (252)
341 PRK11891 aspartate carbamoyltr 84.4 43 0.00093 35.6 15.9 156 140-309 143-317 (429)
342 PRK07060 short chain dehydroge 84.4 1.9 4E-05 40.5 5.4 35 220-254 5-40 (245)
343 COG0059 IlvC Ketol-acid reduct 84.3 0.95 2.1E-05 45.7 3.4 55 221-276 15-73 (338)
344 PRK12828 short chain dehydroge 84.3 1.6 3.6E-05 40.5 5.0 34 221-254 4-38 (239)
345 PRK05557 fabG 3-ketoacyl-(acyl 84.2 2.1 4.6E-05 39.9 5.7 35 221-255 2-37 (248)
346 PRK05562 precorrin-2 dehydroge 84.2 1.5 3.2E-05 42.5 4.6 35 221-255 22-56 (223)
347 PRK06180 short chain dehydroge 84.2 2.2 4.8E-05 41.3 6.0 32 223-254 3-35 (277)
348 PRK12936 3-ketoacyl-(acyl-carr 84.2 2.2 4.8E-05 39.9 5.8 34 221-255 3-37 (245)
349 PRK12826 3-ketoacyl-(acyl-carr 84.1 1.6 3.6E-05 40.9 4.9 35 221-255 3-38 (251)
350 TIGR02130 dapB_plant dihydrodi 84.1 2.7 5.8E-05 42.0 6.5 118 225-355 1-127 (275)
351 PRK05867 short chain dehydroge 83.9 3.2 7E-05 39.4 6.9 34 221-255 6-40 (253)
352 PRK05872 short chain dehydroge 83.8 3.2 7E-05 40.9 7.0 34 221-255 6-40 (296)
353 PRK07523 gluconate 5-dehydroge 83.7 1.9 4.2E-05 41.0 5.3 35 221-256 7-42 (255)
354 TIGR01761 thiaz-red thiazoliny 83.7 3.2 7E-05 42.7 7.1 106 224-350 3-119 (343)
355 PRK01710 murD UDP-N-acetylmura 83.6 1.6 3.6E-05 46.1 5.2 35 222-257 12-46 (458)
356 PTZ00117 malate dehydrogenase; 83.6 1.2 2.5E-05 45.2 3.8 34 222-256 3-37 (319)
357 PRK08416 7-alpha-hydroxysteroi 83.6 3.3 7.2E-05 39.7 6.9 36 220-255 4-40 (260)
358 cd05292 LDH_2 A subgroup of L- 83.6 3.7 8.1E-05 41.3 7.5 32 225-256 1-33 (308)
359 PRK09291 short chain dehydroge 83.6 1.7 3.6E-05 41.2 4.7 32 224-255 2-34 (257)
360 PRK06849 hypothetical protein; 83.6 1.9 4.1E-05 44.4 5.5 33 223-256 3-36 (389)
361 PLN02602 lactate dehydrogenase 83.5 2.2 4.7E-05 44.0 5.8 32 225-256 38-70 (350)
362 PLN02896 cinnamyl-alcohol dehy 83.5 2.1 4.5E-05 43.2 5.7 37 219-255 5-42 (353)
363 PRK04308 murD UDP-N-acetylmura 83.5 1.9 4.1E-05 45.3 5.5 34 222-256 3-36 (445)
364 PRK11730 fadB multifunctional 83.4 1.6 3.5E-05 49.1 5.2 30 225-255 314-343 (715)
365 COG0287 TyrA Prephenate dehydr 83.4 3.4 7.4E-05 41.3 7.0 31 224-255 3-33 (279)
366 PLN02206 UDP-glucuronate decar 83.4 1.8 3.9E-05 45.8 5.3 37 218-254 113-150 (442)
367 cd05293 LDH_1 A subgroup of L- 83.4 2 4.4E-05 43.4 5.5 31 225-256 4-36 (312)
368 PRK00141 murD UDP-N-acetylmura 83.3 1.8 3.8E-05 46.2 5.3 35 221-256 12-46 (473)
369 PRK05876 short chain dehydroge 83.3 3.3 7.1E-05 40.4 6.8 34 221-255 3-37 (275)
370 TIGR02437 FadB fatty oxidation 83.2 3.3 7.2E-05 46.6 7.6 30 225-255 314-343 (714)
371 PRK07231 fabG 3-ketoacyl-(acyl 83.2 2.2 4.7E-05 40.1 5.3 34 221-254 2-36 (251)
372 PLN02240 UDP-glucose 4-epimera 83.0 2.1 4.5E-05 42.8 5.4 34 221-254 2-36 (352)
373 PRK02006 murD UDP-N-acetylmura 83.0 1.9 4E-05 46.2 5.3 36 221-257 4-39 (498)
374 PRK01390 murD UDP-N-acetylmura 83.0 1.9 4.1E-05 45.5 5.3 34 222-256 7-40 (460)
375 COG1250 FadB 3-hydroxyacyl-CoA 82.9 2.4 5.3E-05 42.9 5.7 33 224-257 3-35 (307)
376 PRK07200 aspartate/ornithine c 82.8 67 0.0015 33.8 16.7 171 114-308 56-270 (395)
377 PRK12938 acetyacetyl-CoA reduc 82.8 2.3 5E-05 40.1 5.3 34 222-255 1-35 (246)
378 PRK06194 hypothetical protein; 82.8 3.5 7.6E-05 39.9 6.7 34 221-255 3-37 (287)
379 PRK06841 short chain dehydroge 82.6 2.3 5E-05 40.3 5.3 34 221-254 12-46 (255)
380 PRK07774 short chain dehydroge 82.4 2.4 5.2E-05 39.9 5.3 33 221-253 3-36 (250)
381 TIGR01850 argC N-acetyl-gamma- 82.4 3.7 8.1E-05 42.1 7.0 84 225-321 1-88 (346)
382 PRK05786 fabG 3-ketoacyl-(acyl 82.3 2.4 5.3E-05 39.6 5.3 34 221-254 2-36 (238)
383 PRK08192 aspartate carbamoyltr 82.3 7.8 0.00017 39.8 9.3 108 187-308 121-234 (338)
384 PRK07825 short chain dehydroge 82.2 4.2 9E-05 39.1 7.0 34 221-255 2-36 (273)
385 PRK08217 fabG 3-ketoacyl-(acyl 82.2 2.6 5.6E-05 39.6 5.4 34 221-255 2-36 (253)
386 TIGR00670 asp_carb_tr aspartat 82.0 8.9 0.00019 38.7 9.4 152 140-309 56-225 (301)
387 PRK00436 argC N-acetyl-gamma-g 82.0 2.6 5.6E-05 43.1 5.7 32 225-256 3-36 (343)
388 PTZ00434 cytosolic glyceraldeh 81.9 5.9 0.00013 41.0 8.2 32 225-256 4-40 (361)
389 PRK07063 short chain dehydroge 81.9 4.1 9E-05 38.8 6.8 34 221-255 4-38 (260)
390 PRK12829 short chain dehydroge 81.9 2.3 5E-05 40.4 5.0 34 221-254 8-42 (264)
391 PRK08263 short chain dehydroge 81.9 3.3 7.1E-05 40.0 6.1 32 223-254 2-34 (275)
392 PRK13394 3-hydroxybutyrate deh 81.8 2.5 5.5E-05 40.0 5.2 34 221-254 4-38 (262)
393 PRK06949 short chain dehydroge 81.8 2.7 5.9E-05 39.8 5.4 34 221-254 6-40 (258)
394 PRK06125 short chain dehydroge 81.7 2.7 5.9E-05 40.1 5.4 34 220-253 3-37 (259)
395 PRK09186 flagellin modificatio 81.7 2.5 5.4E-05 40.0 5.1 32 222-253 2-34 (256)
396 TIGR02441 fa_ox_alpha_mit fatt 81.6 3.7 8E-05 46.5 7.2 30 225-255 336-365 (737)
397 PRK06249 2-dehydropantoate 2-r 81.6 1.8 3.9E-05 43.4 4.3 34 222-255 3-36 (313)
398 TIGR02440 FadJ fatty oxidation 81.5 4.3 9.4E-05 45.6 7.7 30 225-255 305-335 (699)
399 PRK06523 short chain dehydroge 81.5 2.4 5.3E-05 40.3 5.0 35 220-254 5-40 (260)
400 PRK07589 ornithine cyclodeamin 81.3 19 0.00042 37.1 11.7 149 187-354 96-249 (346)
401 PRK12557 H(2)-dependent methyl 81.2 45 0.00097 34.3 14.4 39 385-423 207-245 (342)
402 TIGR02622 CDP_4_6_dhtase CDP-g 81.2 2.4 5.2E-05 42.7 5.1 33 222-254 2-35 (349)
403 PRK08703 short chain dehydroge 81.1 2.7 5.9E-05 39.5 5.2 34 221-254 3-37 (239)
404 COG4091 Predicted homoserine d 81.1 2.5 5.4E-05 43.6 5.0 36 221-256 14-50 (438)
405 PRK04523 N-acetylornithine car 81.1 70 0.0015 32.8 17.0 110 140-255 55-206 (335)
406 PRK09072 short chain dehydroge 81.0 3 6.4E-05 39.9 5.4 34 221-254 2-36 (263)
407 PRK08085 gluconate 5-dehydroge 80.9 4.9 0.00011 38.1 6.9 34 221-255 6-40 (254)
408 PRK00683 murD UDP-N-acetylmura 80.9 2.6 5.6E-05 44.0 5.3 33 223-256 2-34 (418)
409 PRK06300 enoyl-(acyl carrier p 80.8 2.5 5.5E-05 42.3 5.0 35 220-255 4-41 (299)
410 PRK06172 short chain dehydroge 80.7 2.9 6.2E-05 39.6 5.2 34 221-254 4-38 (253)
411 cd05290 LDH_3 A subgroup of L- 80.6 3.3 7.1E-05 41.8 5.8 31 226-256 1-32 (307)
412 TIGR03628 arch_S11P archaeal r 80.5 7.1 0.00015 33.9 6.9 64 196-259 37-109 (114)
413 PRK08945 putative oxoacyl-(acy 80.4 2.7 5.9E-05 39.7 4.9 33 222-254 10-43 (247)
414 PRK08063 enoyl-(acyl carrier p 80.4 3.1 6.8E-05 39.2 5.3 34 222-255 2-36 (250)
415 PLN02586 probable cinnamyl alc 80.4 5.2 0.00011 40.7 7.3 33 223-255 183-215 (360)
416 PRK05875 short chain dehydroge 80.3 3.2 7E-05 39.9 5.5 34 221-254 4-38 (276)
417 PRK15181 Vi polysaccharide bio 80.3 2.7 5.8E-05 42.5 5.1 36 220-255 11-47 (348)
418 PRK08642 fabG 3-ketoacyl-(acyl 80.2 3 6.6E-05 39.3 5.1 35 221-255 2-37 (253)
419 PRK06057 short chain dehydroge 80.1 3.1 6.6E-05 39.6 5.2 33 221-253 4-37 (255)
420 KOG2653|consensus 80.1 1.8 3.8E-05 44.7 3.6 110 225-350 7-127 (487)
421 PRK08936 glucose-1-dehydrogena 80.1 3.7 8E-05 39.2 5.7 35 221-255 4-39 (261)
422 PRK12429 3-hydroxybutyrate deh 79.9 3.2 7E-05 39.1 5.2 33 222-254 2-35 (258)
423 PRK07236 hypothetical protein; 79.9 3.1 6.7E-05 42.6 5.4 42 221-263 3-44 (386)
424 PRK05653 fabG 3-ketoacyl-(acyl 79.8 3.3 7.2E-05 38.5 5.2 34 221-254 2-36 (246)
425 KOG0029|consensus 79.8 2.4 5.2E-05 45.8 4.7 35 221-256 12-46 (501)
426 KOG1207|consensus 79.8 5.1 0.00011 37.8 6.2 36 220-255 3-39 (245)
427 PRK08264 short chain dehydroge 79.7 3.3 7.1E-05 38.8 5.2 34 221-254 3-38 (238)
428 PRK07831 short chain dehydroge 79.7 4.8 0.0001 38.4 6.4 33 222-255 15-49 (262)
429 PRK06124 gluconate 5-dehydroge 79.6 3.4 7.5E-05 39.2 5.4 35 220-254 7-42 (256)
430 PRK06398 aldose dehydrogenase; 79.6 3.3 7.2E-05 39.7 5.3 34 221-254 3-37 (258)
431 PRK08993 2-deoxy-D-gluconate 3 79.6 3.2 6.8E-05 39.6 5.1 33 221-253 7-40 (253)
432 PLN02514 cinnamyl-alcohol dehy 79.6 10 0.00022 38.5 9.0 41 215-255 172-212 (357)
433 PRK07890 short chain dehydroge 79.5 3 6.5E-05 39.5 4.9 34 222-256 3-37 (258)
434 PLN02775 Probable dihydrodipic 79.4 3.7 8E-05 41.2 5.6 113 224-355 11-138 (286)
435 TIGR03325 BphB_TodD cis-2,3-di 79.4 3.5 7.6E-05 39.5 5.4 34 221-255 2-36 (262)
436 PLN02695 GDP-D-mannose-3',5'-e 79.4 2.9 6.3E-05 42.8 5.1 32 223-254 20-52 (370)
437 KOG2336|consensus 79.3 2.8 6E-05 42.0 4.6 43 212-255 65-113 (422)
438 PF13460 NAD_binding_10: NADH( 79.3 3.1 6.8E-05 37.3 4.7 30 227-256 1-31 (183)
439 PLN00141 Tic62-NAD(P)-related 79.2 3.5 7.6E-05 39.4 5.3 35 221-255 14-49 (251)
440 COG1004 Ugd Predicted UDP-gluc 79.2 14 0.00031 38.8 9.8 185 225-422 1-250 (414)
441 PRK07067 sorbitol dehydrogenas 79.1 5.7 0.00012 37.7 6.7 33 221-253 3-36 (257)
442 KOG0023|consensus 79.0 13 0.00029 38.0 9.3 133 214-347 173-322 (360)
443 PRK06197 short chain dehydroge 79.0 3.2 7E-05 40.9 5.1 35 221-255 13-48 (306)
444 PRK12937 short chain dehydroge 78.9 3.9 8.4E-05 38.3 5.4 35 221-255 2-37 (245)
445 PRK12825 fabG 3-ketoacyl-(acyl 78.9 3.9 8.5E-05 38.0 5.4 35 222-256 4-39 (249)
446 PRK06196 oxidoreductase; Provi 78.8 3.7 8E-05 40.8 5.5 35 220-254 22-57 (315)
447 PRK12939 short chain dehydroge 78.7 3.8 8.2E-05 38.4 5.3 33 221-253 4-37 (250)
448 PLN02819 lysine-ketoglutarate 78.7 7.4 0.00016 45.7 8.5 28 223-250 202-229 (1042)
449 PRK00421 murC UDP-N-acetylmura 78.7 3.1 6.7E-05 44.0 5.1 35 222-257 5-40 (461)
450 PLN02427 UDP-apiose/xylose syn 78.7 3.4 7.4E-05 42.3 5.3 36 219-254 9-46 (386)
451 PRK07062 short chain dehydroge 78.6 3.8 8.3E-05 39.1 5.3 35 220-255 4-39 (265)
452 PRK08213 gluconate 5-dehydroge 78.6 3.8 8.1E-05 39.0 5.3 34 221-254 9-43 (259)
453 PLN02662 cinnamyl-alcohol dehy 78.5 3.2 6.9E-05 40.8 4.9 32 223-254 3-35 (322)
454 PRK06935 2-deoxy-D-gluconate 3 78.5 3.8 8.2E-05 39.1 5.3 33 221-253 12-45 (258)
455 PRK07806 short chain dehydroge 78.5 3.8 8.3E-05 38.6 5.2 35 221-255 3-38 (248)
456 COG2423 Predicted ornithine cy 78.5 30 0.00065 35.5 11.9 151 187-355 97-251 (330)
457 TIGR03736 PRTRC_ThiF PRTRC sys 78.5 2.7 5.8E-05 41.2 4.2 25 223-247 10-34 (244)
458 PRK07035 short chain dehydroge 78.4 3.9 8.4E-05 38.7 5.3 34 221-254 5-39 (252)
459 PF02629 CoA_binding: CoA bind 78.4 1.9 4.1E-05 35.6 2.7 34 223-256 2-36 (96)
460 PRK07814 short chain dehydroge 78.3 3.8 8.2E-05 39.3 5.2 34 221-254 7-41 (263)
461 PRK12770 putative glutamate sy 78.3 8 0.00017 39.2 7.8 36 222-257 170-205 (352)
462 PRK07576 short chain dehydroge 78.3 3.8 8.3E-05 39.4 5.3 34 221-254 6-40 (264)
463 PRK12746 short chain dehydroge 78.2 4 8.7E-05 38.6 5.3 33 221-253 3-36 (254)
464 PRK09620 hypothetical protein; 78.1 4 8.6E-05 39.5 5.3 34 222-255 1-51 (229)
465 PRK10537 voltage-gated potassi 78.1 11 0.00024 39.5 8.9 102 224-347 240-350 (393)
466 PRK09607 rps11p 30S ribosomal 78.1 12 0.00025 33.4 7.7 65 196-260 44-117 (132)
467 PLN02986 cinnamyl-alcohol dehy 78.0 4 8.6E-05 40.4 5.4 34 222-255 3-37 (322)
468 TIGR03366 HpnZ_proposed putati 77.8 12 0.00026 36.5 8.6 33 222-255 119-152 (280)
469 PRK09880 L-idonate 5-dehydroge 77.8 11 0.00023 37.9 8.5 32 223-255 169-201 (343)
470 PRK07533 enoyl-(acyl carrier p 77.7 3.7 8E-05 39.4 5.0 35 221-256 7-44 (258)
471 PLN02214 cinnamoyl-CoA reducta 77.7 3.8 8.2E-05 41.4 5.2 34 222-255 8-42 (342)
472 PRK12823 benD 1,6-dihydroxycyc 77.7 3.9 8.5E-05 38.9 5.1 35 221-256 5-40 (260)
473 PRK12748 3-ketoacyl-(acyl-carr 77.6 3.4 7.4E-05 39.3 4.7 34 221-254 2-38 (256)
474 PRK06500 short chain dehydroge 77.6 3.9 8.4E-05 38.4 5.0 33 221-253 3-36 (249)
475 KOG1196|consensus 77.6 9 0.0002 38.9 7.6 121 194-333 131-257 (343)
476 TIGR03206 benzo_BadH 2-hydroxy 77.6 3.9 8.4E-05 38.4 5.0 32 222-253 1-33 (250)
477 PLN00198 anthocyanidin reducta 77.6 3.8 8.3E-05 40.9 5.2 34 221-254 6-40 (338)
478 PRK06550 fabG 3-ketoacyl-(acyl 77.5 4.1 8.8E-05 38.0 5.1 33 221-253 2-35 (235)
479 PRK09135 pteridine reductase; 77.5 4 8.7E-05 38.2 5.0 34 222-255 4-38 (249)
480 PRK06463 fabG 3-ketoacyl-(acyl 77.5 4.9 0.00011 38.2 5.7 34 221-254 4-38 (255)
481 PLN02653 GDP-mannose 4,6-dehyd 77.5 3.4 7.3E-05 41.3 4.8 35 221-255 3-38 (340)
482 PRK07326 short chain dehydroge 77.4 3.9 8.4E-05 38.2 4.9 32 222-253 4-36 (237)
483 PRK12481 2-deoxy-D-gluconate 3 77.3 4 8.6E-05 39.0 5.0 33 221-253 5-38 (251)
484 PRK07856 short chain dehydroge 77.2 4.6 0.0001 38.3 5.5 34 221-254 3-37 (252)
485 PRK06077 fabG 3-ketoacyl-(acyl 77.2 4.7 0.0001 37.9 5.5 35 221-255 3-38 (252)
486 PF02558 ApbA: Ketopantoate re 77.2 4.3 9.4E-05 35.6 4.9 98 227-336 1-107 (151)
487 PRK06223 malate dehydrogenase; 77.1 2.4 5.1E-05 42.3 3.5 31 225-256 3-34 (307)
488 PF01494 FAD_binding_3: FAD bi 77.0 3.7 8E-05 40.3 4.9 33 225-258 2-34 (356)
489 PRK10637 cysG siroheme synthas 77.0 3.4 7.4E-05 44.0 4.9 36 220-255 8-43 (457)
490 PRK05565 fabG 3-ketoacyl-(acyl 76.9 4.9 0.00011 37.5 5.5 35 221-255 2-37 (247)
491 PRK12769 putative oxidoreducta 76.9 3.5 7.7E-05 45.7 5.1 33 223-256 326-358 (654)
492 CHL00041 rps11 ribosomal prote 76.9 9.7 0.00021 33.1 6.8 64 198-261 49-113 (116)
493 PRK06171 sorbitol-6-phosphate 76.9 4.3 9.4E-05 38.8 5.2 33 221-253 6-39 (266)
494 PRK07097 gluconate 5-dehydroge 76.9 7.4 0.00016 37.3 6.8 34 221-255 7-41 (265)
495 TIGR03632 bact_S11 30S ribosom 76.9 9.7 0.00021 32.6 6.7 65 197-261 35-100 (108)
496 PRK12409 D-amino acid dehydrog 76.8 3.5 7.7E-05 42.4 4.8 31 225-256 2-32 (410)
497 PRK07792 fabG 3-ketoacyl-(acyl 76.7 4.6 0.0001 40.1 5.4 36 220-256 8-44 (306)
498 PRK12921 2-dehydropantoate 2-r 76.7 3.5 7.5E-05 40.6 4.6 29 225-253 1-29 (305)
499 PRK08849 2-octaprenyl-3-methyl 76.6 3.8 8.2E-05 41.9 5.0 32 225-257 4-35 (384)
500 PRK05866 short chain dehydroge 76.6 4.9 0.00011 39.7 5.6 35 220-254 36-71 (293)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=2.1e-131 Score=1013.62 Aligned_cols=409 Identities=44% Similarity=0.769 Sum_probs=404.4
Q ss_pred CChHHHHHHHHHhhhcccCCChhHHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCCCCHHHH
Q psy8193 18 LGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEI 97 (428)
Q Consensus 18 ~~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~vt~~ev 97 (428)
+++|++++++|++|+++++++|+++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++||
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhccccCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q psy8193 98 IALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTK 177 (428)
Q Consensus 98 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~ 177 (428)
++||+||||||||++||||||||||++||+++|..|+|+++|+|+++|.+++||++|||||||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 178 KNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 178 ~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|++ ++++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||+|||++
T Consensus 161 ~g~~-~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 161 HGFS-PAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred hCCC-CceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 9988 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEecccccccccccccccccceEEEecCCCCCCHH
Q psy8193 258 TTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE 337 (428)
Q Consensus 258 G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~t~e 337 (428)
|++|||+|||+++|++++++++++.+|++++.++ ++++|..+||||+|||++|+||++||++++||+|+||||+|+||+
T Consensus 240 G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~-~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egAN~p~t~e 318 (410)
T PLN02477 240 GAVKNENGLDIPALRKHVAEGGGLKGFPGGDPID-PDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPE 318 (410)
T ss_pred CeEECCCCCCHHHHHHHHHhcCchhccccceEec-CccceeccccEEeeccccccCCHhHHHHcCCcEEEeCCCCCCCHH
Confidence 9999999999999999999999999999988888 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8193 338 ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCT 417 (428)
Q Consensus 338 a~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~ 417 (428)
|+++|++|||+|+||+++|+||||+|||||+||+++++|++++|+++|+++|.++|++|++.|+++++++|+|||++|++
T Consensus 319 a~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~ 398 (410)
T PLN02477 319 ADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVN 398 (410)
T ss_pred HHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q psy8193 418 RVLQAHKTRGL 428 (428)
Q Consensus 418 rv~~a~~~rG~ 428 (428)
||+++|+.|||
T Consensus 399 rv~~a~~~rG~ 409 (410)
T PLN02477 399 RVARATVLRGW 409 (410)
T ss_pred HHHHHHHhhCC
Confidence 99999999997
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-131 Score=994.72 Aligned_cols=409 Identities=46% Similarity=0.804 Sum_probs=404.2
Q ss_pred ChHHHHHHHHHhhhcccCCChhHHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCCCCHHHHH
Q psy8193 19 GPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEII 98 (428)
Q Consensus 19 ~~~~~~~~~~~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~vt~~ev~ 98 (428)
++|++++++++++++.++++++++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||+||++|++
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhhhccccCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhc
Q psy8193 99 ALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKK 178 (428)
Q Consensus 99 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~ 178 (428)
+||+||||||||++||||||||||++||+.+|..|+||++|+|+++|.+++||++|||||||||++++|+||+|+|+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCC
Q psy8193 179 NYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 258 (428)
Q Consensus 179 g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 258 (428)
|.+.++++||||+++|||.+|.++|||||+++++++++.+|.+++|+||+||||||||+++|++|++.|+|||++||++|
T Consensus 162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEecccccccccccccccccceEEEecCCCCCCHHH
Q psy8193 259 TIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEA 338 (428)
Q Consensus 259 ~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~t~ea 338 (428)
+||||+|||+++|++.+++.+++..|++++.++ ++++|+++||||+|||++|+||++||++|+||+|+||||+|+|++|
T Consensus 242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA 320 (411)
T COG0334 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEA 320 (411)
T ss_pred ceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-ccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCCCHHH
Confidence 999999999999998888889999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8193 339 DDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTR 418 (428)
Q Consensus 339 ~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~r 418 (428)
+++|.+|||+|+||+++|||||++|||||+||.++++|++|+|.++|+.+|.++++.+++.++++++++|+|||++|++|
T Consensus 321 ~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~~r~aA~~~a~~R 400 (411)
T COG0334 321 DEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFER 400 (411)
T ss_pred HHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q psy8193 419 VLQAHKTRGL 428 (428)
Q Consensus 419 v~~a~~~rG~ 428 (428)
|++||+.|||
T Consensus 401 va~Am~~~G~ 410 (411)
T COG0334 401 VADAMKARGW 410 (411)
T ss_pred HHHHHHhcCC
Confidence 9999999997
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-130 Score=1006.08 Aligned_cols=413 Identities=30% Similarity=0.442 Sum_probs=404.3
Q ss_pred CCCCCChHHHHHHHHHhhhcccCCChh-----HHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeee
Q psy8193 14 SQNDLGPWGVYLQQIDRVTPYLGSLSR-----WIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRF 88 (428)
Q Consensus 14 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~ 88 (428)
-+.+.+||+++++++++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||
T Consensus 14 ~~~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~ 93 (445)
T PRK14030 14 HPGESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRF 93 (445)
T ss_pred CcCChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEe
Confidence 355788999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhHhhhhhccccCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHH
Q psy8193 89 HPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMS 168 (428)
Q Consensus 89 ~p~vt~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma 168 (428)
||+++++|+++||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.++|||++|||||||||++++|+
T Consensus 94 ~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~ 173 (445)
T PRK14030 94 HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVG 173 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCC
Q psy8193 169 WMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA 248 (428)
Q Consensus 169 ~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga 248 (428)
||+|+|+++.++. ++++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|++.|+
T Consensus 174 w~~d~y~~~~~~~-~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~Ga 252 (445)
T PRK14030 174 YMFGMYKKLTREF-TGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGA 252 (445)
T ss_pred HHHHHHHhccCcc-ccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence 9999999999977 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCeeeCCCCCCHHH---HHHHHHhcCCCc-----CCCCceeccCCCcccccCceEEeccccccccccccccc
Q psy8193 249 KIVAIQDDKTTIYNPNGFNIPK---LQKYVTFTRSIK-----DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANN 320 (428)
Q Consensus 249 kvVaVsD~~G~i~n~~GlD~~~---l~~~~~~~g~l~-----~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~ 320 (428)
+||+|||++|+||||+|||+++ |++++++++++. +||+++.++ ++++|+++||||+|||++|+||.+||++
T Consensus 253 kvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~~~~~cDVliPcAl~n~I~~~na~~ 331 (445)
T PRK14030 253 KVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKPWEQKVDIALPCATQNELNGEDADK 331 (445)
T ss_pred EEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-CccceeccccEEeeccccccCCHHHHHH
Confidence 9999999999999999999988 888998888876 788888888 8999999999999999999999999999
Q ss_pred c---cceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8193 321 V---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 397 (428)
Q Consensus 321 l---~akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~ 397 (428)
| +||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|++++
T Consensus 332 l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 332 LIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred HHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy8193 398 ELANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 428 (428)
Q Consensus 398 ~~a~~~~--~~~r~aA~~~a~~rv~~a~~~rG~ 428 (428)
+.+++++ +++|+|||++|++||++||+.|||
T Consensus 412 ~~~~~~~~~~~lr~aA~~~a~~rva~a~~~rG~ 444 (445)
T PRK14030 412 KYGKEGDGYINYVKGANIAGFMKVAKAMLAQGV 444 (445)
T ss_pred HHhhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999 999999999999999999999996
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-126 Score=980.13 Aligned_cols=412 Identities=32% Similarity=0.514 Sum_probs=402.2
Q ss_pred CCCCChHHHHHHHHHhhhcccCCChh-----HHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeec
Q psy8193 15 QNDLGPWGVYLQQIDRVTPYLGSLSR-----WIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFH 89 (428)
Q Consensus 15 ~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~ 89 (428)
+.+.+||++++.+|++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+|||||||
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~ 98 (445)
T PRK09414 19 PGQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFH 98 (445)
T ss_pred cCCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeec
Confidence 35778999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhHhhhhhccccCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHH
Q psy8193 90 PDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSW 169 (428)
Q Consensus 90 p~vt~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~ 169 (428)
|+++++|+.+||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.+++||+.|||||||||++++|+|
T Consensus 99 p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~ 178 (445)
T PRK09414 99 PSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGY 178 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCE
Q psy8193 170 MMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK 249 (428)
Q Consensus 170 ~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak 249 (428)
|+|+|+++.++.. +++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|
T Consensus 179 ~~d~y~~~~~~~~-g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~Gak 257 (445)
T PRK09414 179 LFGQYKRLTNRFE-GVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAK 257 (445)
T ss_pred HHHHHHhhcCcce-EEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 9999999999875 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeeCCCCCCHHHHHHHHHhc-CCCcCCC---CceeccCCCcccccCceEEecccccccccccccccc---c
Q psy8193 250 IVAIQDDKTTIYNPNGFNIPKLQKYVTFT-RSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV---T 322 (428)
Q Consensus 250 vVaVsD~~G~i~n~~GlD~~~l~~~~~~~-g~l~~~~---~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l---~ 322 (428)
||+|||++|++|||+|||+++|+++++++ +++.+|+ +++.++ ++++|+++||||||||++|+||++|++++ +
T Consensus 258 VVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~-~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~ 336 (445)
T PRK09414 258 VVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLE-GGSPWSVPCDIALPCATQNELDEEDAKTLIANG 336 (445)
T ss_pred EEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecC-CccccccCCcEEEecCCcCcCCHHHHHHHHHcC
Confidence 99999999999999999999999999876 5888887 456777 89999999999999999999999999999 8
Q ss_pred ceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8193 323 AKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT 402 (428)
Q Consensus 323 akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~ 402 (428)
||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+++++.+++
T Consensus 337 akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~~~~ 416 (445)
T PRK09414 337 VKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEE 416 (445)
T ss_pred CeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy8193 403 KK--VSLRTAAFIIGCTRVLQAHKTRGL 428 (428)
Q Consensus 403 ~~--~~~r~aA~~~a~~rv~~a~~~rG~ 428 (428)
++ +++|+|||++|++||++||+.|||
T Consensus 417 ~~~~~~~r~aA~~~a~~rv~~a~~~rG~ 444 (445)
T PRK09414 417 YGKPGNYVAGANIAGFVKVADAMLAQGV 444 (445)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99 999999999999999999999996
No 5
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-123 Score=958.21 Aligned_cols=412 Identities=30% Similarity=0.462 Sum_probs=397.7
Q ss_pred CCCCChHHHHHHHHHhhhcccCCChh-----HHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeec
Q psy8193 15 QNDLGPWGVYLQQIDRVTPYLGSLSR-----WIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFH 89 (428)
Q Consensus 15 ~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~ 89 (428)
+.+..|+|+++++++...++++-+|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+|||||||
T Consensus 15 ~~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~ 94 (444)
T PRK14031 15 PNEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFH 94 (444)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeec
Confidence 44678999999999999999998887 5679999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhHhhhhhccccCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHH
Q psy8193 90 PDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSW 169 (428)
Q Consensus 90 p~vt~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~ 169 (428)
|+++++|+++||+||||||||++||||||||||++||+++|+.|+||++|+|+++|.++|||++|||||||||++++|+|
T Consensus 95 p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~ 174 (444)
T PRK14031 95 ASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGF 174 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCE
Q psy8193 170 MMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK 249 (428)
Q Consensus 170 ~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak 249 (428)
|+|+|+++.++. ++++||||+.+|||.+|.++|||||+++++++++++|.+|+|+||+||||||||+++|++|.+.|++
T Consensus 175 i~d~y~~~~~~~-~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAk 253 (444)
T PRK14031 175 MFGMYKKLSHEF-TGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGK 253 (444)
T ss_pred HHHHHHhhcCCc-ceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 999999999977 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeeCCCCCCHHHHH---HHHHh-cCCCcCCC---CceeccCCCcccccCceEEeccccccccccccccccc
Q psy8193 250 IVAIQDDKTTIYNPNGFNIPKLQ---KYVTF-TRSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT 322 (428)
Q Consensus 250 vVaVsD~~G~i~n~~GlD~~~l~---~~~~~-~g~l~~~~---~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~ 322 (428)
||+|||++|++|||+|||+++|. +++++ ++++.+|+ +++.++ ++++|+.+||||+|||++|+||++||++|+
T Consensus 254 VVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~-~d~~~~~~cDIliPaAl~n~I~~~na~~l~ 332 (444)
T PRK14031 254 VVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE-GARPWGEKGDIALPSATQNELNGDDARQLV 332 (444)
T ss_pred EEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC-CcccccCCCcEEeecccccccCHHHHHHHH
Confidence 99999999999999999999987 55554 67888886 567777 899999999999999999999999999998
Q ss_pred ce---EEEecCCCCCCHHHHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8193 323 AK---IILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWEL 399 (428)
Q Consensus 323 ak---iIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~ 399 (428)
|+ +|+||||+|+||+|+++|++|||+++||+++|||||++|||||+||+++++|++|+|+++|+++|.++|++++++
T Consensus 333 a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v~~~ 412 (444)
T PRK14031 333 ANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEACVQY 412 (444)
T ss_pred hcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy8193 400 ANTK--KVSLRTAAFIIGCTRVLQAHKTRGL 428 (428)
Q Consensus 400 a~~~--~~~~r~aA~~~a~~rv~~a~~~rG~ 428 (428)
++++ ++++|+|||++|++||++||+.|||
T Consensus 413 ~~~~~~~~~~r~aA~~~a~~rva~a~~~~G~ 443 (444)
T PRK14031 413 GTEADGYVNYVKGANVAGFMKVAKAMMAQGI 443 (444)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9998 6999999999999999999999996
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-122 Score=951.49 Aligned_cols=412 Identities=32% Similarity=0.543 Sum_probs=398.0
Q ss_pred CCCCChHHHHHHHHHhhhcccCCChh---HHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCC
Q psy8193 15 QNDLGPWGVYLQQIDRVTPYLGSLSR---WIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPD 91 (428)
Q Consensus 15 ~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~ 91 (428)
+.+..|+|.+.+.++...++++-+|+ ++++|++|+|+|+|++||+||||++++|+|||||||+++||+||||||||+
T Consensus 26 ~~~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~ 105 (454)
T PTZ00079 26 PNQPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPS 105 (454)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCC
Confidence 45678999999999999999998886 789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhHhhhhhccccCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHH
Q psy8193 92 VTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMM 171 (428)
Q Consensus 92 vt~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~ 171 (428)
++++|+++||++|||||||++||||||||||++||+.+|+.|++|+||+|+++|.++|||++||||||+||++++|+||+
T Consensus 106 v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~ 185 (454)
T PTZ00079 106 VNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLF 185 (454)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEE
Q psy8193 172 DTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIV 251 (428)
Q Consensus 172 d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvV 251 (428)
|+|+++.+.. ++++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|++.|+|||
T Consensus 186 ~~y~~~~~~~-~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVV 264 (454)
T PTZ00079 186 GQYKKLRNNF-EGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVL 264 (454)
T ss_pred HHHHHHhCCC-CceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE
Confidence 9999999977 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeeeCCCCCCHHHH---HHHHHhc-CCCcCCC----CceeccCCCcccccCceEEecccccccccccccccc--
Q psy8193 252 AIQDDKTTIYNPNGFNIPKL---QKYVTFT-RSIKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV-- 321 (428)
Q Consensus 252 aVsD~~G~i~n~~GlD~~~l---~~~~~~~-g~l~~~~----~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l-- 321 (428)
+|||++|+||||+|||+++| .++++.+ +++.+|+ +++.++ ++++|+++||||+|||++|+||.+||++|
T Consensus 265 avSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~ 343 (454)
T PTZ00079 265 TMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKKPWEVPCDIAFPCATQNEINLEDAKLLIK 343 (454)
T ss_pred EEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcCcccCCccEEEeccccccCCHHHHHHHHH
Confidence 99999999999999999888 6666644 7787775 567787 88999999999999999999999999988
Q ss_pred -cceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy8193 322 -TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELA 400 (428)
Q Consensus 322 -~akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a 400 (428)
+||+|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|++++++|
T Consensus 344 ~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a 423 (454)
T PTZ00079 344 NGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYA 423 (454)
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy8193 401 NTK--KVSLRTAAFIIGCTRVLQAHKTRGL 428 (428)
Q Consensus 401 ~~~--~~~~r~aA~~~a~~rv~~a~~~rG~ 428 (428)
+++ ++++|+|||+.|+.||++||..|||
T Consensus 424 ~~~~~~~~~r~~A~i~~~~rva~Am~~~G~ 453 (454)
T PTZ00079 424 EKYGGKSDLVAGANIAGFLKVADSMIEQGC 453 (454)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999 5899999999999999999999996
No 7
>KOG2250|consensus
Probab=100.00 E-value=2.6e-105 Score=811.81 Aligned_cols=385 Identities=44% Similarity=0.715 Sum_probs=363.2
Q ss_pred HHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCCCCHHHHHHHHhHhhhhhccccCCCCCcee
Q psy8193 41 WIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKG 120 (428)
Q Consensus 41 ~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~vt~~ev~~LA~~Mt~K~Al~~lp~GGaKg 120 (428)
++.+|..|+|.++|++||++|+|+.+++.||||||+.+|||+||||||||+|+++++++||+.||||||++++|||||||
T Consensus 67 Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKG 146 (514)
T KOG2250|consen 67 ILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKG 146 (514)
T ss_pred hhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCC
Q psy8193 121 GIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQ 200 (428)
Q Consensus 121 gI~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~ 200 (428)
||.+||+.+|..|+||+||+|+++|.++|||++|+|+|||||+++||.|++|+|++.+|+ +++++||||+.+|||++|.
T Consensus 147 Gi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~-~~a~vTGK~i~~GGs~~R~ 225 (514)
T KOG2250|consen 147 GILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGH-WKAVVTGKPISLGGSHGRY 225 (514)
T ss_pred ccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcc-cceeeeCCCCccCCccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhC--CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 201 KATGRGVFIIGSKIASKIN--LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 201 ~aTg~Gv~~~~~~~~~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
+||||||+++++.++++++ .+++|+||+||||||||++++++|++.|+++|+|+|++|+|+||+|||+++|.++++++
T Consensus 226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK 305 (514)
T ss_pred cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999998 47999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCceeccCCC-------cccccCceEEecccccccccccccccccce---EEEecCCCCCCHHHHHHHHHCCCc
Q psy8193 279 RSIKDFNEGEKINDSK-------EFWSIPCDILIPAAIEDQITINNANNVTAK---IILEGANGPTTTEADDILRDKGII 348 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~-------~il~~~~DIliPaA~~~~It~~na~~l~ak---iIvegAN~p~t~ea~~iL~~rGI~ 348 (428)
+++.+|++++... +. .+|..+||||+|||.+|+||.+||..|.++ +||||||+|+||||+++|+++||+
T Consensus 306 ~~i~~f~~~~~~~-~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~ 384 (514)
T KOG2250|consen 306 KTIKSFDGAKLSY-EGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVL 384 (514)
T ss_pred ccccccccccccC-ccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeE
Confidence 9999998876544 32 677889999999999999999999999666 999999999999999999999999
Q ss_pred eeccccccccchhhhHHHHHhhcc-------cCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhcC--------CCHHH
Q psy8193 349 LAPDVITNAGGVIVSYFEWVQNLS-------NLLWTEQEINLRLNNIICNAFDAI----WELANTKK--------VSLRT 409 (428)
Q Consensus 349 viPD~laNaGGVi~s~~E~~qn~~-------~~~w~~e~v~~~l~~~m~~~~~~v----~~~a~~~~--------~~~r~ 409 (428)
++||..||+|||++|||||+||++ .+.|++|.|...|..+|...++.. ++.+++++ .+++.
T Consensus 385 i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~ 464 (514)
T KOG2250|consen 385 IIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVH 464 (514)
T ss_pred EechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhh
Confidence 999999999999999999999999 578999999999999887777766 55554422 37888
Q ss_pred HHHHHHHHHHHHHHHHcC
Q psy8193 410 AAFIIGCTRVLQAHKTRG 427 (428)
Q Consensus 410 aA~~~a~~rv~~a~~~rG 427 (428)
.|.+.++.|++++|..+|
T Consensus 465 gal~~~~~kva~ai~~~g 482 (514)
T KOG2250|consen 465 GALIATFNKVARAITDQG 482 (514)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 888888888888888776
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=3.8e-84 Score=708.83 Aligned_cols=374 Identities=25% Similarity=0.341 Sum_probs=349.4
Q ss_pred HhhhcccCCChhHHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCC-----------CCHHHH
Q psy8193 29 DRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPD-----------VTLSEI 97 (428)
Q Consensus 29 ~~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~-----------vt~~ev 97 (428)
++.+-.|+++|++++.|++|++++.+.||+ | +.|+|||+||+.+ +||||||||. ++++|+
T Consensus 453 ~k~alsFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv 523 (1002)
T PTZ00324 453 EKTALAFRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDEN 523 (1002)
T ss_pred CCceEEEeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHH
Confidence 477889999999999999999999999999 5 8899999999997 9999999998 889999
Q ss_pred HHHHhHhhhhhccccCCCCCceeEEecCCCCCCH---HHHHHHHHHHHHHHhcccCCCCcc-----------cCCCCCCC
Q psy8193 98 IALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSN---NELMRLTRRYTNEISSIIGLNKDI-----------PAPDVGTD 163 (428)
Q Consensus 98 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~---~ele~~~r~f~~~l~~~iG~~~di-----------papDvgt~ 163 (428)
.+||.||||||| +||+|||||||.+||+.++. .|+|+++|+|+++|.+++||..|| ||||+||+
T Consensus 524 ~~LA~tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntt 601 (1002)
T PTZ00324 524 YNLASTQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTT 601 (1002)
T ss_pred HHHHHHHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCC
Confidence 999999999997 99999999999999999887 889999999999999999999988 99999999
Q ss_pred HHHHHHHHHHhhhhcCCcC-CceeecccccCCCcCCCC-ChhHHHHHHHHHHHHHHhCCCCCCceEEEEe--ccHHHHHH
Q psy8193 164 MQIMSWMMDTYSTKKNYTI-PGIVTGKPISIGGSFGRQ-KATGRGVFIIGSKIASKINLNIINSKISIQG--FGNVGSVA 239 (428)
Q Consensus 164 ~~~ma~~~d~y~~~~g~~~-~~~vtGkp~~~GGs~~r~-~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG--fGnVG~~~ 239 (428)
++.|+|| ++|++.+|+.. ++++||||..+||+.++. ++||+||+.+++++++++|+++++.||++|| ||+||++.
T Consensus 602 a~~mdwa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~ 680 (1002)
T PTZ00324 602 GTLMDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNE 680 (1002)
T ss_pred HHHHHHH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHH
Confidence 9999999 89999999965 999999999999999987 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCC---------------------Cceecc----CCC
Q psy8193 240 ANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN---------------------EGEKIN----DSK 294 (428)
Q Consensus 240 a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~---------------------~~~~i~----~~~ 294 (428)
++++. +|||||+|.+|++|||+|||.++|.+++++++++.+|+ +++.+. ..+
T Consensus 681 ~lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~ 757 (1002)
T PTZ00324 681 LLLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRN 757 (1002)
T ss_pred HHHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccch
Confidence 99874 79999999999999999999999999999988888652 222221 023
Q ss_pred cc---cccCceEEecccc-ccccccccc--------ccccceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchhh
Q psy8193 295 EF---WSIPCDILIPAAI-EDQITINNA--------NNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIV 362 (428)
Q Consensus 295 ~i---l~~~~DIliPaA~-~~~It~~na--------~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi~ 362 (428)
++ +..+|||||||+. +++||++|+ .+++||+||||||+|+||+|+.+|++|||+++||+++|+|||++
T Consensus 758 ~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~ 837 (1002)
T PTZ00324 758 EFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTS 837 (1002)
T ss_pred hhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEe
Confidence 33 4789999999998 999999999 78999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcc------------------cCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8193 363 SYFEWVQNLS------------------NLLWT--EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCT 417 (428)
Q Consensus 363 s~~E~~qn~~------------------~~~w~--~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~ 417 (428)
|||||+||++ +.+|+ +++|.++|++.|..+|+.||+.+++.++++|+||..+..+
T Consensus 838 S~~Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~ 912 (1002)
T PTZ00324 838 SSLEVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVLSRK 912 (1002)
T ss_pred eHHHHHhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999999999 78899 9999999999999999999999999999999999987643
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=4.5e-73 Score=549.09 Aligned_cols=241 Identities=34% Similarity=0.568 Sum_probs=231.4
Q ss_pred ecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCC
Q psy8193 187 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF 266 (428)
Q Consensus 187 tGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~Gl 266 (428)
||||+.+|||.||.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhcCC-CcCCC----CceeccCCCcccccCceEEecccccccccccccccc---cceEEEecCCCCCC
Q psy8193 267 NIPKL---QKYVTFTRS-IKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTT 335 (428)
Q Consensus 267 D~~~l---~~~~~~~g~-l~~~~----~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l---~akiIvegAN~p~t 335 (428)
|+++| .++++++++ +.+|+ +++.++ ++++|+++||||+|||++|+||.+|+++| +||+|+||||+|+|
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~-~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t 159 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE-GKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCT 159 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC-CcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCC
Confidence 99998 556666665 45553 578887 99999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHH
Q psy8193 336 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKK--VSLRTAAFI 413 (428)
Q Consensus 336 ~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~ 413 (428)
|+|+++|++|||+|+||+++|+|||++|||||+||+++++|++|+|+++|+++|.++|+++++++++++ ++||+|||+
T Consensus 160 ~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~ 239 (254)
T cd05313 160 AEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANI 239 (254)
T ss_pred HHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHcCC
Q psy8193 414 IGCTRVLQAHKTRGL 428 (428)
Q Consensus 414 ~a~~rv~~a~~~rG~ 428 (428)
+|++||++||+.||+
T Consensus 240 ~a~~rv~~a~~~rG~ 254 (254)
T cd05313 240 AGFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999995
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=2.1e-65 Score=495.13 Aligned_cols=233 Identities=46% Similarity=0.756 Sum_probs=223.6
Q ss_pred CCcCCCCChhHHHHHHHHHHHHHHhCC-CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHH
Q psy8193 194 GGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 272 (428)
Q Consensus 194 GGs~~r~~aTg~Gv~~~~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~ 272 (428)
|||.+|.++|||||++++++++++++. +++|+||+||||||||+++|++|++.|++||+|||++|+||||+|||+++|+
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 899999999999999999999999888 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-CcCCC-----CceeccCC-CcccccCceEEecccccccccccccc-ccc--ceEEEecCCCCCCHHHHHHH
Q psy8193 273 KYVTFTRS-IKDFN-----EGEKINDS-KEFWSIPCDILIPAAIEDQITINNAN-NVT--AKIILEGANGPTTTEADDIL 342 (428)
Q Consensus 273 ~~~~~~g~-l~~~~-----~~~~i~~~-~~il~~~~DIliPaA~~~~It~~na~-~l~--akiIvegAN~p~t~ea~~iL 342 (428)
++++++++ +..|+ +.+.++ + +++|+++||||+|||++++||++|++ .++ ||+||||||+|+||+|+++|
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L 159 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIP-NDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL 159 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEEC-HHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEec-cccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH
Confidence 99999998 99987 567777 5 48999999999999999999999999 999 99999999999999999999
Q ss_pred HHCCCceeccccccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy8193 343 RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 422 (428)
Q Consensus 343 ~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv~~a 422 (428)
++|||+|+||+++|+||||+||+||+||+++++|+++++.++++++|.+++++|++.|+++++++|+|||++|++||+++
T Consensus 160 ~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a 239 (244)
T PF00208_consen 160 RERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAA 239 (244)
T ss_dssp HHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy8193 423 HKTRG 427 (428)
Q Consensus 423 ~~~rG 427 (428)
|+.||
T Consensus 240 ~~~rG 244 (244)
T PF00208_consen 240 MKLRG 244 (244)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 99998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=4.2e-62 Score=467.69 Aligned_cols=226 Identities=49% Similarity=0.860 Sum_probs=221.8
Q ss_pred CCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHH
Q psy8193 194 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQK 273 (428)
Q Consensus 194 GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~ 273 (428)
|||.+|.++|||||++++++++++++.+++++||+||||||||+++|++|.++|++||+|+|++|++|||+|||+++|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcCCCCceeccCCCcccccCceEEecccccccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccc
Q psy8193 274 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 353 (428)
Q Consensus 274 ~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~ 353 (428)
+++++|++.+|++++.++ ++++++.+||||+|||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||+
T Consensus 81 ~~~~~g~l~~~~~~~~~~-~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 81 YKKEHGSVLGFPGAERIT-NEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDI 159 (227)
T ss_pred HHHhcCCcccCCCceecC-CccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChH
Confidence 999999999999888787 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy8193 354 ITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 420 (428)
Q Consensus 354 laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv~ 420 (428)
++|+||||+||+||+||++++.|++++|.+++++.|.+++.++++.++++++++|++||.+|++||+
T Consensus 160 ~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 160 LANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred HhcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=6e-61 Score=456.72 Aligned_cols=217 Identities=34% Similarity=0.615 Sum_probs=211.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l 281 (428)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|||++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999 99999999999988999
Q ss_pred cCCCCceeccCCCcccccCceEEecccccccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchh
Q psy8193 282 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVI 361 (428)
Q Consensus 282 ~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi 361 (428)
..|+.++.++ +++++..+||||+|||++|+||++|+++++||+|+|+||+|+|++++++|++|||+|+||+++|+|||+
T Consensus 80 ~~~~~~~~~~-~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi 158 (217)
T cd05211 80 ARVKVQDYFP-GEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVI 158 (217)
T ss_pred cccCcccccC-cccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeE
Confidence 8888767676 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy8193 362 VSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 420 (428)
Q Consensus 362 ~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv~ 420 (428)
+|||||+||.++++|++++|.+++++.|.+++++|++.|+++++|||+|||++|++||+
T Consensus 159 ~s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 159 VSYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred eEHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=1.9e-48 Score=342.94 Aligned_cols=130 Identities=48% Similarity=0.889 Sum_probs=124.5
Q ss_pred CceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCCCCHHHHHHHHhHhhhhhccccCCCCCceeEEecCCC
Q psy8193 48 PKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPK 127 (428)
Q Consensus 48 p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~vt~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~ 127 (428)
|+|+++|+|||+||||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||+++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhh
Q psy8193 128 NLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTK 177 (428)
Q Consensus 128 ~~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~ 177 (428)
++|..|+|+++|+|+++|.+++|+.+|||||||||+++||+||+|+|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999865
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=1e-44 Score=341.32 Aligned_cols=195 Identities=24% Similarity=0.375 Sum_probs=179.7
Q ss_pred CChhHHHHHHHHHHHHHHh--CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 200 QKATGRGVFIIGSKIASKI--NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++| .+.+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D----------~~~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VAD----------INEEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHH
Confidence 4799999999999999997 779999999999999999999999999999998 888 566777777664
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccccccccccccccccceEEEecCCCCCC-HHHHHHHHHCCCceecccccc
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT-TEADDILRDKGIILAPDVITN 356 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~t-~ea~~iL~~rGI~viPD~laN 356 (428)
. +.+.++ .++++..+|||++|||++++||.+|+++++||+|+|+||+|+| ++++++|++|||+|+||+++|
T Consensus 71 ~-------g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~N 142 (200)
T cd01075 71 F-------GATVVA-PEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVN 142 (200)
T ss_pred c-------CCEEEc-chhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeee
Confidence 3 355666 7788888999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccchhhhHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy8193 357 AGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 420 (428)
Q Consensus 357 aGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv~ 420 (428)
+|||++||+||+|+. ++++.++++.+ .+++.+|++.|++++++||+|||.+|++||.
T Consensus 143 aGGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 143 AGGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred CcCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 999999999999863 67899999998 6799999999999999999999999999985
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.96 E-value=2.2e-30 Score=219.24 Aligned_cols=100 Identities=52% Similarity=0.778 Sum_probs=96.5
Q ss_pred ceEEecccccccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchhhhHHHHHhhcccCCCCHHH
Q psy8193 301 CDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQE 380 (428)
Q Consensus 301 ~DIliPaA~~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~ 380 (428)
||||+|||++++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.|++++ ++|+
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy8193 381 INLRLNNIICNAFDAIWELANTK 403 (428)
Q Consensus 381 v~~~l~~~m~~~~~~v~~~a~~~ 403 (428)
|.+++.+.|.+++.++++.|+++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.93 E-value=4.7e-25 Score=245.10 Aligned_cols=316 Identities=22% Similarity=0.280 Sum_probs=236.9
Q ss_pred hhhcccCCChhHHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCCCC---HHHHHHHHhHhhh
Q psy8193 30 RVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVT---LSEIIALSGWMTI 106 (428)
Q Consensus 30 ~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~vt---~~ev~~LA~~Mt~ 106 (428)
+.+-.|+++|+.++-|.+|..-.++ |.+- ..|+|++..+.. -|+||+||+ +-. .+|++.|+..+..
T Consensus 754 k~~lSFK~dps~i~~lp~P~Py~eI-FVyg------~~vEGvHLRFg~---VARGGLRws-DR~~D~rtEvlgLvKAQqv 822 (1592)
T COG2902 754 KVALSFKFDPSLIDELPYPRPYREI-FVYG------PEVEGVHLRFGP---VARGGLRWS-DRNQDFRTEVLGLVKAQQV 822 (1592)
T ss_pred ceeEEEEeChhhcCCCCCCCcceEE-EEEc------CcceEEEeeccc---ccccccccc-ccchhHHHHHHHHHHHHHh
Confidence 5677889999999999999844444 4343 468999888766 599999998 443 5899999999999
Q ss_pred hhccccCCCCCceeEEecCC--CCCCHHHHH----HHHHHHHHHHhccc---------CC----------CCcccCCCCC
Q psy8193 107 KNAAVNIPYGGAKGGIRVNP--KNLSNNELM----RLTRRYTNEISSII---------GL----------NKDIPAPDVG 161 (428)
Q Consensus 107 K~Al~~lp~GGaKggI~~dP--~~~s~~ele----~~~r~f~~~l~~~i---------G~----------~~dipapDvg 161 (428)
|| +.||-+|||||+.+.+ ..-+++|++ +..+.|++.|.+++ -| ...+.|||-|
T Consensus 823 KN--avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKG 900 (1592)
T COG2902 823 KN--AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKG 900 (1592)
T ss_pred cC--CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCC
Confidence 99 5578899999999875 455777764 35567777775422 11 1225699999
Q ss_pred CCH-HHHHH-HHHHhhhhcCCcCCceeecccccCCCcCCC----CChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc--
Q psy8193 162 TDM-QIMSW-MMDTYSTKKNYTIPGIVTGKPISIGGSFGR----QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-- 233 (428)
Q Consensus 162 t~~-~~ma~-~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r----~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-- 233 (428)
|.. .|.|. ++.+| +++-|+....|||.|. .+.|++|++++++..++++|.++....+.+.|.|
T Consensus 901 TAtFsD~AN~vA~~~---------~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdm 971 (1592)
T COG2902 901 TATFSDIANSVAREY---------GFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDM 971 (1592)
T ss_pred cccHHHHHHHHHHHh---------CCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCC
Confidence 953 45544 45554 4556666777777664 7899999999999999999999988889999984
Q ss_pred --HHHHHHHHHHHHCCCEEEEEEcCCCeeeCC-CCCCHHHHHH---HHHhcCCCcCCC------Cc--------------
Q psy8193 234 --NVGSVAANLFFKAGAKIVAIQDDKTTIYNP-NGFNIPKLQK---YVTFTRSIKDFN------EG-------------- 287 (428)
Q Consensus 234 --nVG~~~a~~L~~~GakvVaVsD~~G~i~n~-~GlD~~~l~~---~~~~~g~l~~~~------~~-------------- 287 (428)
.|+++- +|...--+.||+.|.++-.+|| -++|...+.+ +.-.+.++.+|. ++
T Consensus 972 sGDVfgNg--MLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lsp 1049 (1592)
T COG2902 972 SGDVFGNG--MLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSP 1049 (1592)
T ss_pred Cccccccc--eeccccceeeEEecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCH
Confidence 555553 3445556789999999999999 4787766666 333556676662 11
Q ss_pred ----------eeccCCCc----ccccC--------ceEEecccc-cccccccccc--------cccceEEEecCCCCCCH
Q psy8193 288 ----------EKINDSKE----FWSIP--------CDILIPAAI-EDQITINNAN--------NVTAKIILEGANGPTTT 336 (428)
Q Consensus 288 ----------~~i~~~~~----il~~~--------~DIliPaA~-~~~It~~na~--------~l~akiIvegAN~p~t~ 336 (428)
+..+ |.+ ||..+ .|.+|||.. .|.++.++|+ +++||+|+||||..+|+
T Consensus 1050 e~~~~lgi~~~~~~-P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ 1128 (1592)
T COG2902 1050 EVIAALGIDKTELA-PNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQ 1128 (1592)
T ss_pred HHHHHhCCCccccC-hHHHHHHHHcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccc
Confidence 0111 222 34434 566778887 6777776555 55999999999999999
Q ss_pred HHHHHHHHCCCceeccccccccchhhhHHHHHhh
Q psy8193 337 EADDILRDKGIILAPDVITNAGGVIVSYFEWVQN 370 (428)
Q Consensus 337 ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn 370 (428)
.+.-.+..+|..+.-|++.|+|||.||..|..-.
T Consensus 1129 ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVniK 1162 (1592)
T COG2902 1129 RGRIEFALAGGRINTDAIDNSAGVDCSDHEVNIK 1162 (1592)
T ss_pred hhHHHHHHcCCeecchhhcccCCCcccchhhhhH
Confidence 9999999999999999999999999999997543
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.93 E-value=1.6e-24 Score=249.36 Aligned_cols=315 Identities=19% Similarity=0.289 Sum_probs=250.1
Q ss_pred hhhcccCCChhHHhhcCCCceEEEEEEEEEeCCCeeeeeEEEEEEecCCCCCCCCCeeecCCCC--HHHHHHHHhHhhhh
Q psy8193 30 RVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVT--LSEIIALSGWMTIK 107 (428)
Q Consensus 30 ~a~~~~~~~~~~~~~L~~p~r~~~v~~pv~~d~G~~~~~~G~rv~h~~~~GPakGGiR~~p~vt--~~ev~~LA~~Mt~K 107 (428)
+.+-.|+++|..++.+..|...+++.+ .- ..|.|++..... .|+|||||+.... .+||+.|+..++.|
T Consensus 692 k~~lsfKldp~~l~~~p~P~P~~eifV-~s------~~~eGvHLR~g~---VARGGlRwSdR~eDfRtEvlgL~kaQ~vK 761 (1528)
T PF05088_consen 692 KPALSFKLDPSFLPDLPEPRPYFEIFV-YS------PRFEGVHLRFGD---VARGGLRWSDRPEDFRTEVLGLVKAQQVK 761 (1528)
T ss_pred CCeEEEEEcHHHcCCCCCCCCcEEEEE-EC------CceEEEEccccc---cccCcccccCCHHHHHHHHHHHHHHHHhc
Confidence 577889999999999999988887753 22 469999998877 6999999964322 58999999999999
Q ss_pred hccccCCCCCceeEEecCCCCC--CHH----HHHHHHHHHHHHHhcc---------cCC---------C-CcccCCCCCC
Q psy8193 108 NAAVNIPYGGAKGGIRVNPKNL--SNN----ELMRLTRRYTNEISSI---------IGL---------N-KDIPAPDVGT 162 (428)
Q Consensus 108 ~Al~~lp~GGaKggI~~dP~~~--s~~----ele~~~r~f~~~l~~~---------iG~---------~-~dipapDvgt 162 (428)
| +.||-||||||++++.... ++. |.....+.|++.|.++ +.| + ..|-|.|-||
T Consensus 762 N--avIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGT 839 (1528)
T PF05088_consen 762 N--AVIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGT 839 (1528)
T ss_pred C--CcccCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCc
Confidence 9 5689999999999875433 444 3345678899999765 223 1 1256999999
Q ss_pred CH-HHHHH-HHHHhhhhcCCcCCceeecccccCCCcCCC----CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHH
Q psy8193 163 DM-QIMSW-MMDTYSTKKNYTIPGIVTGKPISIGGSFGR----QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVG 236 (428)
Q Consensus 163 ~~-~~ma~-~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r----~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG 236 (428)
.. .|+|. ++.+| |++-|+....|||.|. -+.|++|.|.+++..++++|.++..-.+.|+|.|.++
T Consensus 840 AtfSD~AN~ia~~~---------gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMs 910 (1528)
T PF05088_consen 840 ATFSDIANEIAAEY---------GFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMS 910 (1528)
T ss_pred chHHHHHHHHHHHc---------CCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCC
Confidence 53 45544 55554 6788899999999886 6799999999999999999999998899999998887
Q ss_pred HHHH--HHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHH----HHHHh-cCCCcCCC------C-------ce--------
Q psy8193 237 SVAA--NLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ----KYVTF-TRSIKDFN------E-------GE-------- 288 (428)
Q Consensus 237 ~~~a--~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~----~~~~~-~g~l~~~~------~-------~~-------- 288 (428)
.-+. -+|...-.|+||..|...-..||+. |++.-. ++++. +.++.+|. | ++
T Consensus 911 GDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~ 989 (1528)
T PF05088_consen 911 GDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEM 989 (1528)
T ss_pred ccccccchhcccceeEEEecCcceeecCcCC-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHH
Confidence 7666 3677778899999999999999998 775533 33332 23566662 1 11
Q ss_pred ---------eccCCCc----ccccCceEEeccccccccccc-----------------ccccccceEEEecCCCCCCHHH
Q psy8193 289 ---------KINDSKE----FWSIPCDILIPAAIEDQITIN-----------------NANNVTAKIILEGANGPTTTEA 338 (428)
Q Consensus 289 ---------~i~~~~~----il~~~~DIliPaA~~~~It~~-----------------na~~l~akiIvegAN~p~t~ea 338 (428)
.++ |++ ||..++|+|+-..++..|-+. |+..++||+|+||+|..+|+.+
T Consensus 990 r~~lgi~~~~~t-p~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~g 1068 (1528)
T PF05088_consen 990 RAALGIEKDSLT-PDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRG 1068 (1528)
T ss_pred HHHhCCCCCccC-HHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHH
Confidence 122 433 678999999999998877432 6778899999999999999999
Q ss_pred HHHHHHCCCceeccccccccchhhhHHHH
Q psy8193 339 DDILRDKGIILAPDVITNAGGVIVSYFEW 367 (428)
Q Consensus 339 ~~iL~~rGI~viPD~laNaGGVi~s~~E~ 367 (428)
+--+..+|..+--|++-|++||-||-.|.
T Consensus 1069 RiE~a~~GGriNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1069 RIEYALNGGRINTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred HHHHHHcCCccchhhhcccCCCcCccchh
Confidence 99999999999999999999999999995
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.36 E-value=1.4e-12 Score=132.42 Aligned_cols=169 Identities=21% Similarity=0.292 Sum_probs=117.2
Q ss_pred ceEEEEeccHHHHHHHHHHHH--------CC--CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCC---ceecc
Q psy8193 225 SKISIQGFGNVGSVAANLFFK--------AG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE---GEKIN 291 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~--------~G--akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~---~~~i~ 291 (428)
.+|+||||||||++++++|.+ .| .+|++|+|++|++|||+|+|++++++++++++++..|+. ...++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999999987 45 799999999999999999999999999999988877752 12234
Q ss_pred CCCccc-ccCceEEecccccccccccccccccceEEEecCCC------CCC---HHHHHHHHHCCCceecccccccc-ch
Q psy8193 292 DSKEFW-SIPCDILIPAAIEDQITINNANNVTAKIILEGANG------PTT---TEADDILRDKGIILAPDVITNAG-GV 360 (428)
Q Consensus 292 ~~~~il-~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~------p~t---~ea~~iL~~rGI~viPD~laNaG-GV 360 (428)
.++++ +.+|||+|.|+. .+++..+.++++.+|-+. |++ ++..++-+++|+.+. |-+|.+ |+
T Consensus 83 -~~ell~~~~~DVvVd~t~-----~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~--~ea~v~~Gi 154 (336)
T PRK08374 83 -PEEIVEEIDADIVVDVTN-----DKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYL--FEATVMAGT 154 (336)
T ss_pred -HHHHHhcCCCCEEEECCC-----cHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEE--EeccccccC
Confidence 66777 589999998873 456666655544444333 322 234455667888777 445444 33
Q ss_pred hhhHHHHHhhc-ccC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 361 IVSYFEWVQNL-SNL---------LWTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 361 i~s~~E~~qn~-~~~---------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
=+ +.-+++. .+. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 155 Pi--i~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 155 PI--IGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI 205 (336)
T ss_pred Cc--hHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence 11 1222221 110 0123456667753 4679999999999775
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.30 E-value=7e-12 Score=126.67 Aligned_cols=84 Identities=29% Similarity=0.493 Sum_probs=69.5
Q ss_pred ceEEEEeccHHHHHHHHHHHH--------CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcc
Q psy8193 225 SKISIQGFGNVGSVAANLFFK--------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 296 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~--------~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~i 296 (428)
++|+||||||||+.++++|.+ .+.+||+|+|++|++||++|||++++++++++ +++..++ ...++ .+++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~-~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIK-FDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCC-HHHH
Confidence 379999999999999999987 36899999999999999999999999998876 7665553 12123 5567
Q ss_pred cccCceEEecccccc
Q psy8193 297 WSIPCDILIPAAIED 311 (428)
Q Consensus 297 l~~~~DIliPaA~~~ 311 (428)
+..++||+|+|+..+
T Consensus 78 l~~~~DVvVE~t~~~ 92 (326)
T PRK06392 78 FEIKPDVIVDVTPAS 92 (326)
T ss_pred hcCCCCEEEECCCCC
Confidence 778999999999653
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.05 E-value=1.3e-09 Score=110.95 Aligned_cols=176 Identities=21% Similarity=0.292 Sum_probs=114.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHC----------CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 294 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~ 294 (428)
.+|+|+|||+||+.+++.|.+. +.+|++|+|+++.+|+++|+|++++.++.++.+.+..|++.....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999999765 589999999999999999999999999988877776665432222255
Q ss_pred ccc-ccCceEEecccccccccccccccc-------cceEEEecCCCCCC---HHHHHHHHHCCCceeccccccccchhhh
Q psy8193 295 EFW-SIPCDILIPAAIEDQITINNANNV-------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVIVS 363 (428)
Q Consensus 295 ~il-~~~~DIliPaA~~~~It~~na~~l-------~akiIvegAN~p~t---~ea~~iL~~rGI~viPD~laNaGGVi~s 363 (428)
+++ +.++||++.|+..+.-+.+.+..+ ++.+|+ +--.|++ ++..+..+++|+.+. |-+..||-+=.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt-aNK~pla~~~~eL~~~A~~~g~~~~--~ea~v~~glPi 159 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT-SNKGPLALAYKELKELAKKNGVRFR--YEATVGGAMPI 159 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc-CCcHHHHhhHHHHHHHHHHcCCEEE--EeeeeeechhH
Confidence 666 468999999998665543333222 333443 2224543 455566677888776 33333322111
Q ss_pred HHHHHhhc-ccC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 364 YFEWVQNL-SNL---------LWTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 364 ~~E~~qn~-~~~---------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
+..++++ .+. .=+-.-+..++++. ...|.+++..|++.|.
T Consensus 160 -i~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 160 -INLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY 209 (341)
T ss_pred -HHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence 1122211 110 01234456666322 3579999999999775
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.68 E-value=1.4e-07 Score=77.02 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l 281 (428)
+||+|++..++...+..+.++++++++|+|+|++|+.+++.|.+.+.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999988888999999999999999999999999986555568774
Q ss_pred cCCCCceeccCCCcccccCceEEeccccccccccc--ccccccceEEEecC
Q psy8193 282 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN--NANNVTAKIILEGA 330 (428)
Q Consensus 282 ~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~--na~~l~akiIvegA 330 (428)
||+|+|+..+.+..+ +....++.+|++.|
T Consensus 56 --------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 --------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred --------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999986666555 56666777877754
No 22
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.41 E-value=1.2e-06 Score=89.57 Aligned_cols=174 Identities=15% Similarity=0.210 Sum_probs=103.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHC----------CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 294 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~ 294 (428)
.+|+|.|||+||+.+++.|.++ ..+|++|+|+++.+++++|+|++.+++.......+..|. ..+.+
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~----~~~~~ 78 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI----EHHPE 78 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh----ccChH
Confidence 6899999999999999999763 358999999999999999999988666432211111111 01122
Q ss_pred ccc--ccCceEEecccccccccccccccc------cceEEEecCCCCCC---HHHHHHHHHCCCceecccccccc-ch-h
Q psy8193 295 EFW--SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAG-GV-I 361 (428)
Q Consensus 295 ~il--~~~~DIliPaA~~~~It~~na~~l------~akiIvegAN~p~t---~ea~~iL~~rGI~viPD~laNaG-GV-i 361 (428)
+++ ..+.||+|+|+..+..+.+.+..+ +-+-||-+--.|++ +|..+.-+++|+.+. |=++.| |+ +
T Consensus 79 ~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~--yEasVggGiPi 156 (346)
T PRK06813 79 ERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR--YSGATAAALPT 156 (346)
T ss_pred HHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE--Eeeeeeeccch
Confidence 333 336899999987776666655544 22445544444443 444555667787776 334444 33 1
Q ss_pred hhHHHHHh------hcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 362 VSYFEWVQ------NLSNL-LWTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 362 ~s~~E~~q------n~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
...+.... ...+. .=+-.-+..++.+. ...|.+++..|++.|.
T Consensus 157 I~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~~-g~~f~eal~~Aq~lGy 206 (346)
T PRK06813 157 LDIGQFSLAGCHIEKIEGILNGTTNYILTKMNEE-DITFEEALKEAQSKGI 206 (346)
T ss_pred HHHHhhhcccCcEEEEEEEEechHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 11121110 00000 00223445554321 2469999999999875
No 23
>PLN02700 homoserine dehydrogenase family protein
Probab=98.40 E-value=7.8e-07 Score=91.56 Aligned_cols=177 Identities=15% Similarity=0.170 Sum_probs=98.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHHC-------C--CEEEEEEcCCCeeeCCC----CCCHHHHHH---HHHhcCCCcCCCC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKA-------G--AKIVAIQDDKTTIYNPN----GFNIPKLQK---YVTFTRSIKDFNE 286 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~-------G--akvVaVsD~~G~i~n~~----GlD~~~l~~---~~~~~g~l~~~~~ 286 (428)
+-.+|+|.|+|+||+.+++.|.++ | .+|++|+|+++.++|++ |||++.+.+ .+.+...+..|+.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 346899999999999999987653 3 58999999999999965 999988776 3344444443311
Q ss_pred ---c-----------eeccCCCccc-ccCceEEeccccccccccccccc-c-cceEEEecCCCCCC--HHHHHHHHHCCC
Q psy8193 287 ---G-----------EKINDSKEFW-SIPCDILIPAAIEDQITINNANN-V-TAKIILEGANGPTT--TEADDILRDKGI 347 (428)
Q Consensus 287 ---~-----------~~i~~~~~il-~~~~DIliPaA~~~~It~~na~~-l-~akiIvegAN~p~t--~ea~~iL~~rGI 347 (428)
. +.++ ..+.+ ..+.+|+|.|+....+ .+...+ + +-+-||-+--.+++ .+--+.|+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ViVD~T~s~~~-~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~~ 159 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVID-IATLLGKSTGLVVVDCSASMET-IGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHPR 159 (377)
T ss_pred ccccccccccccccchhhh-HHHHhhccCCCEEEECCCChHH-HHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcCC
Confidence 0 0011 11222 3456888888864222 222222 2 22334433333332 222344555666
Q ss_pred ceeccccccccch---hhhHHHHHh---hcccC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 348 ILAPDVITNAGGV---IVSYFEWVQ---NLSNL----LWTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 348 ~viPD~laNaGGV---i~s~~E~~q---n~~~~----~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
.+. |=++.||- |...-+.++ +...+ .=+..-+..++++ ...|.+++..|++.|.
T Consensus 160 ~~~--yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~--g~~fseal~eAq~~Gy 223 (377)
T PLN02700 160 RIR--HESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELED--GKPFSEVVKQAKSLGY 223 (377)
T ss_pred eEE--EEeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 665 33444422 222222221 00000 0123456666653 4579999999999886
No 24
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.26 E-value=4.6e-06 Score=76.33 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=58.0
Q ss_pred HHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCc
Q psy8193 216 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKE 295 (428)
Q Consensus 216 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~ 295 (428)
+..+..+.|++++|.|||.||+.+|+.|...|++| .|+| +|+-..++.... +| +..+ .++
T Consensus 15 r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V-~V~e----------~DPi~alqA~~d-----Gf---~v~~-~~~ 74 (162)
T PF00670_consen 15 RATNLMLAGKRVVVIGYGKVGKGIARALRGLGARV-TVTE----------IDPIRALQAAMD-----GF---EVMT-LEE 74 (162)
T ss_dssp HHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EE-EEE-----------SSHHHHHHHHHT-----T----EEE--HHH
T ss_pred hcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEE-EEEE----------CChHHHHHhhhc-----Cc---EecC-HHH
Confidence 44578899999999999999999999999999998 4999 788776665543 23 3323 334
Q ss_pred ccccCceEEecccc-cccccccccccccceEE
Q psy8193 296 FWSIPCDILIPAAI-EDQITINNANNVTAKII 326 (428)
Q Consensus 296 il~~~~DIliPaA~-~~~It~~na~~l~akiI 326 (428)
.+ ..+||+|-|+. .++|+.+...+++=..|
T Consensus 75 a~-~~adi~vtaTG~~~vi~~e~~~~mkdgai 105 (162)
T PF00670_consen 75 AL-RDADIFVTATGNKDVITGEHFRQMKDGAI 105 (162)
T ss_dssp HT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEE
T ss_pred HH-hhCCEEEECCCCccccCHHHHHHhcCCeE
Confidence 44 37899999886 46788888888854333
No 25
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.17 E-value=6.2e-06 Score=83.42 Aligned_cols=179 Identities=16% Similarity=0.149 Sum_probs=106.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHHC----------CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 292 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~ 292 (428)
+-.+|.|.|||+||+.++++|.++ ..+|++|+|+++..+. ++|...+ ..+...+.+. ..
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~- 70 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LG- 70 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------cc-
Confidence 456899999999999999999884 3689999999998885 4444444 3333322221 11
Q ss_pred CCcccccCceEEecccccccccccccccc-----cceEEEecCCCCCCH---HHHHHHHHCCCceeccccccccch---h
Q psy8193 293 SKEFWSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTTT---EADDILRDKGIILAPDVITNAGGV---I 361 (428)
Q Consensus 293 ~~~il~~~~DIliPaA~~~~It~~na~~l-----~akiIvegAN~p~t~---ea~~iL~~rGI~viPD~laNaGGV---i 361 (428)
.+.+...+.||++++...+.-+.+.+..+ +-|.||-+--.|++. |..+.-+++|+.+. |=|+.||= |
T Consensus 71 ~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~--yEAtV~gGiPiI 148 (333)
T COG0460 71 DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLL--YEATVGGGIPII 148 (333)
T ss_pred HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEE--EEeeeccCcchH
Confidence 34456778999999998876666543333 234455443334432 34445556666555 33333332 1
Q ss_pred hhHHHHHhhcccC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CHHHHHHHHHH
Q psy8193 362 VSYFEWVQNLSNL-------LWTEQEINLRLNNIICNAFDAIWELANTKKV---------SLRTAAFIIGC 416 (428)
Q Consensus 362 ~s~~E~~qn~~~~-------~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~---------~~r~aA~~~a~ 416 (428)
..--|.+. -... .=+-.-+..++++-. ..|+++++.|++.|. +=-+||+-+++
T Consensus 149 ~~lr~~l~-g~~I~~i~GIlNGT~NyIlt~m~~~~-~~f~dal~eAq~lGyAE~DPt~DleG~DaA~Kl~I 217 (333)
T COG0460 149 KLLRELLA-GDEILSIRGILNGTTNYILTRMEEGG-LSFEDALAEAQELGYAEADPTDDLEGIDAARKLVI 217 (333)
T ss_pred HHHHhhcc-cCceEEEEEEEeccHHHHHHHHHccC-CCHHHHHHHHHHcCCCCCCCCCCccchHHHHHHHH
Confidence 11111111 0000 113456677777653 379999999999775 33456665543
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.10 E-value=9.5e-05 Score=65.75 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCce
Q psy8193 209 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE 288 (428)
Q Consensus 209 ~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~ 288 (428)
.+++.++++.+.+++++++.|.|.|++|+.+++.|.+.|...|.+.| -+.+.+.+..++.+.- .. ..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~----------r~~~~~~~~~~~~~~~-~~--~~ 70 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVN----------RTLEKAKALAERFGEL-GI--AI 70 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEc----------CCHHHHHHHHHHHhhc-cc--ce
Confidence 34556666677788999999999999999999999998744446777 3455555554433210 00 00
Q ss_pred eccCCCcccccCceEEeccccccccccccccc----c-cceEEEecCCCCCCHHHHHHHHHCCCceec
Q psy8193 289 KINDSKEFWSIPCDILIPAAIEDQITINNANN----V-TAKIILEGANGPTTTEADDILRDKGIILAP 351 (428)
Q Consensus 289 ~i~~~~~il~~~~DIliPaA~~~~It~~na~~----l-~akiIvegAN~p~t~ea~~iL~~rGI~viP 351 (428)
...+.++. -.++|++|-|+.....+.+.... + .-++|++-+-.|...+..+.++++|+.++|
T Consensus 71 ~~~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~ 137 (155)
T cd01065 71 AYLDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTID 137 (155)
T ss_pred eecchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeC
Confidence 11112233 35799999999876652222111 1 346777776556533777888999998775
No 27
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.99 E-value=2.1e-05 Score=88.81 Aligned_cols=187 Identities=13% Similarity=0.172 Sum_probs=108.7
Q ss_pred HHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHC---------CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCc
Q psy8193 212 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 282 (428)
Q Consensus 212 ~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~ 282 (428)
+.+-+.+-.+-+..+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++|+|+|+..+.+..+... .
T Consensus 453 ~~LH~~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~ 530 (819)
T PRK09436 453 RACHQSFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--E 530 (819)
T ss_pred HHHHHHHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--C
Confidence 33333343445788999999999999999998763 357999999999999999999987766544321 1
Q ss_pred CCCCceeccCCCcccccCceEEecccccccccccccccccc-eEEEecCCCCCC------HHHHHHHHHCCCceeccccc
Q psy8193 283 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA-KIILEGANGPTT------TEADDILRDKGIILAPDVIT 355 (428)
Q Consensus 283 ~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~a-kiIvegAN~p~t------~ea~~iL~~rGI~viPD~la 355 (428)
.+.-...++ ...-...+.||+|+|+....+...-..-++. +-||-+--.+++ ++..+..+++|+.+. |-+
T Consensus 531 ~~~~~~~~~-~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~--yea 607 (819)
T PRK09436 531 PFDLDRLIR-LVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL--YET 607 (819)
T ss_pred CCCHHHHHH-HHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE--Eee
Confidence 111001111 0001234679999999766554433333332 445544333444 344455667888876 445
Q ss_pred ccc-ch--hhhHHHHHh---hcc---cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 356 NAG-GV--IVSYFEWVQ---NLS---NL-LWTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 356 NaG-GV--i~s~~E~~q---n~~---~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
+.| |+ +...-+.++ +.. +. .=+..-+..++++ ...|.+++..|++.|.
T Consensus 608 tV~~giPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~Gy 665 (819)
T PRK09436 608 NVGAGLPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGY 665 (819)
T ss_pred eeccccchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCC
Confidence 444 33 222222221 000 00 0023344555543 3468899999998775
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.87 E-value=0.0001 Score=73.48 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 279 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g 279 (428)
...|+.+.+. .+++..+.++.|++|.|+|+|.+|+.+|+.|...|++|+ |.|++ .+++.+..+ .+
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~----------~~~~~~~~~-~g 194 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARS----------SADLARITE-MG 194 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHH-CC
Confidence 3566666643 455566779999999999999999999999999999875 77643 233333322 11
Q ss_pred CCcCCCCceecc--CCCcccccCceEEeccccccccccccccccc-ceEEEecCCCCC-CHHHHHHHHHCCCcee
Q psy8193 280 SIKDFNEGEKIN--DSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT-TTEADDILRDKGIILA 350 (428)
Q Consensus 280 ~l~~~~~~~~i~--~~~~il~~~~DIliPaA~~~~It~~na~~l~-akiIvegAN~p~-t~ea~~iL~~rGI~vi 350 (428)
...+. +.++.+ .++|+++-|.....++.+....++ -.+|++-+..|- |+- +..+++|+..+
T Consensus 195 -------~~~~~~~~l~~~l-~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 -------LIPFPLNKLEEKV-AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred -------CeeecHHHHHHHh-ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 12221 012222 489999999887788877766663 468999998885 443 56688898775
No 29
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.82 E-value=0.00044 Score=69.07 Aligned_cols=169 Identities=17% Similarity=0.243 Sum_probs=100.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc--Cce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~--~~D 302 (428)
++|.|+|+|++|+.+|+.|.+.|.+|+ +.| .+.+++.+..+. | ....++++++.+. .+|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~d----------r~~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYD----------RNPEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999974 677 455666555432 2 2233224445432 367
Q ss_pred EEeccccccccccccc----ccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccchhhhH-----------
Q psy8193 303 ILIPAAIEDQITINNA----NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIVSY----------- 364 (428)
Q Consensus 303 IliPaA~~~~It~~na----~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGVi~s~----------- 364 (428)
+++-|........+.. ..+ .-++|+...+... +.+..+.++++|+.|+ | ...+||+...-
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~a~~g~~~~~gG~~ 139 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWGLERGYCLMIGGDK 139 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHHHhcCCeEEecCCH
Confidence 7666654432222222 222 2356777766543 4566788999999998 5 45556653211
Q ss_pred --HHHHhhc----cc-----CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHH
Q psy8193 365 --FEWVQNL----SN-----LLW--------TEQEINLRLNNIICNAFDAIWELANT--KKVSLRTAAFII 414 (428)
Q Consensus 365 --~E~~qn~----~~-----~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~ 414 (428)
||-++.+ .. ..+ ..+.++.-+...+-.++.+-+..+++ .|+++.+...++
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~ 210 (301)
T PRK09599 140 EAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVW 210 (301)
T ss_pred HHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2222111 11 001 02334444455555678888888888 889887776654
No 30
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.79 E-value=6.7e-05 Score=84.56 Aligned_cols=175 Identities=14% Similarity=0.178 Sum_probs=105.6
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHC--------C--CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceec
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKA--------G--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 290 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i 290 (428)
+.+..+|+|.|||+||+.+++.|.++ | .+|++|+|+++.+++++|+|...+.+..+.... .+ ....+
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~--~~-~~~~~ 531 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAV--EW-DEESL 531 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcC--Cc-cHHHH
Confidence 44668899999999999999998763 3 688999999999999999998887765544221 11 11100
Q ss_pred cCCCccc--ccCceEEecccccccccccccccccceEEEecCCCC-CC------HHHHHHHHHCCCceeccccccccchh
Q psy8193 291 NDSKEFW--SIPCDILIPAAIEDQITINNANNVTAKIILEGANGP-TT------TEADDILRDKGIILAPDVITNAGGVI 361 (428)
Q Consensus 291 ~~~~~il--~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p-~t------~ea~~iL~~rGI~viPD~laNaGGVi 361 (428)
- +.+. ..+-+|+|+|+....+......-|++..=|=-||-. .+ ++..+.-+++|+.+. |=++.||-+
T Consensus 532 ~--e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~--yEasV~~gi 607 (810)
T PRK09466 532 F--LWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL--YNATVGAGL 607 (810)
T ss_pred H--HHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE--Eeceeeecc
Confidence 0 1111 223469999997665444333445444444455653 22 233455677898887 445555443
Q ss_pred hhHHHHHhhcc--cCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 362 VSYFEWVQNLS--NLL---------WTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 362 ~s~~E~~qn~~--~~~---------w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
=. ..-++++. +.. =+-.-+.+++++ ...|.+++..|++.|.
T Consensus 608 Pi-i~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 608 PI-NHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL 659 (810)
T ss_pred Ch-HHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 21 22222221 110 012234454544 3578999999998775
No 31
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.71 E-value=0.0001 Score=77.23 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 198 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 198 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
++.-.||.|++.+++.+. +..+.|++|+|.|+|++|+.+|+.|...|++|+ |+| .|..+..+....
T Consensus 189 dn~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d----------~dp~ra~~A~~~ 254 (425)
T PRK05476 189 DNRYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTE----------VDPICALQAAMD 254 (425)
T ss_pred cccHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEc----------CCchhhHHHHhc
Confidence 445668888877766443 556899999999999999999999999999975 787 455444333221
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccc-eEEEecC
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTA-KIILEGA 330 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~a-kiIvegA 330 (428)
| .+.++ .++++. .+||+|+|+. .+.|+.+....++- .+++-.+
T Consensus 255 -G-------~~v~~-l~eal~-~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 255 -G-------FRVMT-MEEAAE-LGDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred -C-------CEecC-HHHHHh-CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 1 22222 334443 7999999985 45677766666633 3444433
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.67 E-value=0.00029 Score=70.61 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 279 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g 279 (428)
..+|+.| ++..++++.+.++.+++|.|.|+|.+|+.+++.|...|++|. ++|+ +.+++... +..|
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r----------~~~~~~~~-~~~G 195 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGAR----------KSAHLARI-TEMG 195 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHH-HHcC
Confidence 4566666 455667777888999999999999999999999999999874 6774 33343332 2222
Q ss_pred CCcCCCCceecc--CCCcccccCceEEecccccccccccccccc-cceEEEecCCCCC-CHHHHHHHHHCCCcee
Q psy8193 280 SIKDFNEGEKIN--DSKEFWSIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPT-TTEADDILRDKGIILA 350 (428)
Q Consensus 280 ~l~~~~~~~~i~--~~~~il~~~~DIliPaA~~~~It~~na~~l-~akiIvegAN~p~-t~ea~~iL~~rGI~vi 350 (428)
.+.+. +..+.+ .++||+|-|+....++++-...+ +-.+|++-|..|- |.- +.-+++||.++
T Consensus 196 -------~~~~~~~~l~~~l-~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~ 260 (296)
T PRK08306 196 -------LSPFHLSELAEEV-GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL 260 (296)
T ss_pred -------CeeecHHHHHHHh-CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence 22222 011222 37999999987666776655444 2346676666663 221 23456787665
No 33
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.62 E-value=0.00018 Score=76.16 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCc
Q psy8193 204 GRGVFIIG-SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 282 (428)
Q Consensus 204 g~Gv~~~~-~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~ 282 (428)
.+|...++ ...++..+..+.|++|+|+|+|+||+.+|+.|...|++|+ ++| .|+.........
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e----------~dp~~a~~A~~~----- 296 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTE----------IDPICALQAAME----- 296 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCchhHHHHHhc-----
Confidence 34443333 3445556778999999999999999999999999999975 666 343333222211
Q ss_pred CCCCceeccCCCcccccCceEEecccc-cccccccccccccc-eEEEecCCC
Q psy8193 283 DFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTA-KIILEGANG 332 (428)
Q Consensus 283 ~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~a-kiIvegAN~ 332 (428)
+.+..+ .++++ ..+||++.|+. .+.|+.+....++- -+++..+-+
T Consensus 297 ---G~~~~~-leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 297 ---GYQVVT-LEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ---Cceecc-HHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 223333 34444 47999999875 56788887777754 355555444
No 34
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.55 E-value=0.00084 Score=64.73 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCE--EEEEEcCCCeeeCCCCCCHHHH-HHHHHhcC
Q psy8193 203 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPNGFNIPKL-QKYVTFTR 279 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--vVaVsD~~G~i~n~~GlD~~~l-~~~~~~~g 279 (428)
|+-=+..++..+++..|.+++++||+|.|.|.+|+.+|+.|.+.|.+ -+.|.|++|-++....-++..- .++.+..+
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~ 83 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN 83 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc
Confidence 44445566677777788899999999999999999999999999987 5679999988766543212111 22322221
Q ss_pred CCcCCCCceeccCCCcccccCceEEecccccccccccccccc-cceEEEecCCCCC-CHHHHHHHHHCCCc
Q psy8193 280 SIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPT-TTEADDILRDKGII 348 (428)
Q Consensus 280 ~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l-~akiIvegAN~p~-t~ea~~iL~~rGI~ 348 (428)
. . ... .+ ..+.+. ++||+|-|+..+.++++.+..+ +-.+|..-. +|+ |+-..+. .+.|..
T Consensus 84 ~-~---~~~-~~-l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~~A-~~~ga~ 145 (226)
T cd05311 84 P-E---KTG-GT-LKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPEEA-KEAGAD 145 (226)
T ss_pred c-C---ccc-CC-HHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHHHH-HHcCCc
Confidence 0 0 000 11 212332 5899999999888887776655 334677666 565 4333333 344663
No 35
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.55 E-value=0.00039 Score=72.75 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCC
Q psy8193 201 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 280 (428)
Q Consensus 201 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~ 280 (428)
--||.+++ +..++..+..+.|++|+|+|+|++|+.+++.+...|++|+ |+| .|..++...++ .
T Consensus 182 ~g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d----------~d~~R~~~A~~-~-- 244 (413)
T cd00401 182 YGCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTE----------VDPICALQAAM-E-- 244 (413)
T ss_pred chhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEE----------CChhhHHHHHh-c--
Confidence 34555554 4455556778899999999999999999999999999976 677 56666554433 2
Q ss_pred CcCCCCceeccCCCcccccCceEEecccc-cccccccccccc--cceEEEecCCCCC
Q psy8193 281 IKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNV--TAKIILEGANGPT 334 (428)
Q Consensus 281 l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l--~akiIvegAN~p~ 334 (428)
+...+. .++.+ ..+||+|.|+. ...++.+....+ .+.+|.-| ..+.
T Consensus 245 -----G~~~~~-~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG-~~~~ 293 (413)
T cd00401 245 -----GYEVMT-MEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG-HFDV 293 (413)
T ss_pred -----CCEEcc-HHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC-CCCC
Confidence 223333 33333 36899999986 456666545555 34443333 3343
No 36
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.54 E-value=5.6e-05 Score=64.79 Aligned_cols=90 Identities=18% Similarity=0.326 Sum_probs=56.0
Q ss_pred eccHHHHHHHHHHHHC----CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc-cCceEEe
Q psy8193 231 GFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCDILI 305 (428)
Q Consensus 231 GfGnVG~~~a~~L~~~----GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~-~~~DIli 305 (428)
|||+||+.+++.|.+. +.+|++|+|++ .+.+++ ..... ++.....+.+++++ .++||+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASF---------PDEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHH---------THSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhc---------ccccccCCHHHHhcCcCCCEEE
Confidence 8999999999999886 68999999999 777666 11111 11222232455555 5799999
Q ss_pred cccccccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccccccccchh
Q psy8193 306 PAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVI 361 (428)
Q Consensus 306 PaA~~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~laNaGGVi 361 (428)
+|+..+.+. .-..++| ++|+.| +.+|.|...
T Consensus 65 E~t~~~~~~---------------------~~~~~~L-~~G~~V---Vt~nk~ala 95 (117)
T PF03447_consen 65 ECTSSEAVA---------------------EYYEKAL-ERGKHV---VTANKGALA 95 (117)
T ss_dssp E-SSCHHHH---------------------HHHHHHH-HTTCEE---EES-HHHHH
T ss_pred ECCCchHHH---------------------HHHHHHH-HCCCeE---EEECHHHhh
Confidence 997543222 1123444 789988 579998886
No 37
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.39 E-value=0.0047 Score=64.08 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=98.9
Q ss_pred cccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc
Q psy8193 154 DIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFG 233 (428)
Q Consensus 154 dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG 233 (428)
.|-..-.|++.=|.+|+... |. .++.-|- ....+.+-=++..+-.+.++.|.++.|+||.|+|+|
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~-----gI----~v~napg------~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G 125 (378)
T PRK15438 61 FVGTATAGTDHVDEAWLKQA-----GI----GFSAAPG------CNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVG 125 (378)
T ss_pred EEEECcccccccCHHHHHHC-----CC----EEEECCC------cCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcC
Confidence 34445567766667776532 21 1232221 123344444445555556667889999999999999
Q ss_pred HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEecccc----
Q psy8193 234 NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI---- 309 (428)
Q Consensus 234 nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~---- 309 (428)
+||+.+|+.|...|.+|+ +.|.... +. +. .....+ .++++ .+|||++-+..
T Consensus 126 ~IG~~vA~~l~a~G~~V~-~~dp~~~---~~--------------~~-----~~~~~~-L~ell-~~sDiI~lh~PLt~~ 180 (378)
T PRK15438 126 NVGRRLQARLEALGIKTL-LCDPPRA---DR--------------GD-----EGDFRS-LDELV-QEADILTFHTPLFKD 180 (378)
T ss_pred HHHHHHHHHHHHCCCEEE-EECCccc---cc--------------cc-----ccccCC-HHHHH-hhCCEEEEeCCCCCC
Confidence 999999999999999997 4453210 00 00 011112 44555 36888884432
Q ss_pred -----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCCc-eecccccc
Q psy8193 310 -----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII-LAPDVITN 356 (428)
Q Consensus 310 -----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI~-viPD~laN 356 (428)
.+.|+++...+++ -.+++..+=|++ ..+| .+.|+++-+. .+=|+.-+
T Consensus 181 g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~ 236 (378)
T PRK15438 181 GPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEG 236 (378)
T ss_pred cccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCC
Confidence 3557777777774 568899999996 5544 4677766442 44455443
No 38
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.33 E-value=0.004 Score=65.12 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
+-++..+.-+.+++.-.+|++++|.|+|+|.+|.-+|+.|.++|.+-|.|+.+ ..++..++.++.+
T Consensus 158 ~VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~La~~~~---- 223 (414)
T COG0373 158 AVSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELAKKLG---- 223 (414)
T ss_pred ccchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHHHhC----
Confidence 34455555555555545799999999999999999999999999877789985 4566666666654
Q ss_pred CCCceeccCCCcccc--cCceEEecc--cccccccccccccccc----eEEEecCCCCC-CHH
Q psy8193 284 FNEGEKINDSKEFWS--IPCDILIPA--AIEDQITINNANNVTA----KIILEGANGPT-TTE 337 (428)
Q Consensus 284 ~~~~~~i~~~~~il~--~~~DIliPa--A~~~~It~~na~~l~a----kiIvegAN~p~-t~e 337 (428)
++.++ .+++.+ .++||+|-| |...+|+.++....-. .+|++-||.+- .|+
T Consensus 224 ---~~~~~-l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~ 282 (414)
T COG0373 224 ---AEAVA-LEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPE 282 (414)
T ss_pred ---Ceeec-HHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCcc
Confidence 33333 344442 489999999 5688999988877622 39999999774 443
No 39
>PLN02494 adenosylhomocysteinase
Probab=97.31 E-value=0.00089 Score=70.95 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCC
Q psy8193 201 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 280 (428)
Q Consensus 201 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~ 280 (428)
--||.+++ +..++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.| .|..........
T Consensus 234 yGtgqS~~---d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e----------~dp~r~~eA~~~--- 296 (477)
T PLN02494 234 YGCRHSLP---DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTE----------IDPICALQALME--- 296 (477)
T ss_pred ccccccHH---HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCchhhHHHHhc---
Confidence 34555553 3344555677899999999999999999999999999976 666 344333332221
Q ss_pred CcCCCCceeccCCCcccccCceEEecccc-cccccccccccccc-eEEEecCC--CCCCHHH
Q psy8193 281 IKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTA-KIILEGAN--GPTTTEA 338 (428)
Q Consensus 281 l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~a-kiIvegAN--~p~t~ea 338 (428)
+ ...++ .++++ ..+||++.|+. .+.|+.+....++. -+++-.+. ..+..++
T Consensus 297 --G---~~vv~-leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~a 351 (477)
T PLN02494 297 --G---YQVLT-LEDVV-SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLG 351 (477)
T ss_pred --C---Ceecc-HHHHH-hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHH
Confidence 1 11222 33443 36899999876 45678887777754 24444443 3454433
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.30 E-value=0.00059 Score=62.05 Aligned_cols=114 Identities=25% Similarity=0.310 Sum_probs=75.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
++|.++|+|++|+.+|+.|.+.|..|. +.| .+.+++.+..+.. .+..+++.++. ..||++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d----------~~~~~~~~~~~~g--------~~~~~s~~e~~-~~~dvv 61 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYD----------RSPEKAEALAEAG--------AEVADSPAEAA-EQADVV 61 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEE----------SSHHHHHHHHHTT--------EEEESSHHHHH-HHBSEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eec----------cchhhhhhhHHhh--------hhhhhhhhhHh-hcccce
Confidence 589999999999999999999999984 777 6777877776652 44444244443 467988
Q ss_pred ecccccccc-----cccc-cccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccch
Q psy8193 305 IPAAIEDQI-----TINN-ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGV 360 (428)
Q Consensus 305 iPaA~~~~I-----t~~n-a~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGV 360 (428)
+-|-..... ..++ +..+ +-++|++-.+... +.+..+.++++|+.|+=-.+. ||.
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~--Gg~ 124 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVS--GGP 124 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE--SHH
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeee--ccc
Confidence 877654332 2222 2223 5678888777653 556778899999999866665 665
No 41
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.29 E-value=0.00084 Score=70.11 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l 281 (428)
.||.+++.+ +++..+..+.|++|+|.|+|++|+.+|+.+...|++|+ |.| .|+....+....
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d----------~dp~r~~~A~~~---- 237 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTE----------VDPIRALEAAMD---- 237 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEe----------CChhhHHHHHhc----
Confidence 455554433 33444667899999999999999999999999999976 676 455443333221
Q ss_pred cCCCCceeccCCCcccccCceEEecccc-ccccccccccccc-ceEEEecCCCC--CCHHH-HHHHHH
Q psy8193 282 KDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVT-AKIILEGANGP--TTTEA-DDILRD 344 (428)
Q Consensus 282 ~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~-akiIvegAN~p--~t~ea-~~iL~~ 344 (428)
+...++ .++.+ ..+||+|.|+. .+.|+.+....++ -.+++-.+-.+ +..++ .+.+.+
T Consensus 238 ----G~~v~~-leeal-~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 238 ----GFRVMT-MEEAA-KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred ----CCEeCC-HHHHH-hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 123333 33443 47899999875 5567766555553 23555444444 44333 344444
No 42
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.23 E-value=0.00088 Score=59.23 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc--
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-- 297 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il-- 297 (428)
.++++++++|.|.|.+|+.++..|.+.|++-|.|+++ +.+++.++.++.+. .....++ .+++.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t~~ra~~l~~~~~~----~~~~~~~-~~~~~~~ 72 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------TPERAEALAEEFGG----VNIEAIP-LEDLEEA 72 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------SHHHHHHHHHHHTG----CSEEEEE-GGGHCHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------CHHHHHHHHHHcCc----cccceee-HHHHHHH
Confidence 3889999999999999999999999999986678874 46677777665411 1122222 33333
Q ss_pred ccCceEEeccccc--ccccccccccccc--eEEEecCCCC-CCHH
Q psy8193 298 SIPCDILIPAAIE--DQITINNANNVTA--KIILEGANGP-TTTE 337 (428)
Q Consensus 298 ~~~~DIliPaA~~--~~It~~na~~l~a--kiIvegAN~p-~t~e 337 (428)
-.++||+|-|+.. ..++.+......- ++|++-|+-+ ++|+
T Consensus 73 ~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 73 LQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred HhhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 3589999999864 4778887777754 6999999643 4544
No 43
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=97.19 E-value=0.0025 Score=66.15 Aligned_cols=125 Identities=25% Similarity=0.269 Sum_probs=91.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCE--EEEEEcCCCeeeCCC-CC--CHHHHH
Q psy8193 198 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPN-GF--NIPKLQ 272 (428)
Q Consensus 198 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--vVaVsD~~G~i~n~~-Gl--D~~~l~ 272 (428)
+-..-||-=+..++-.+++..|.+|++.+|++.|.|..|-.++++|...|.+ =|-++|++|-+|+.. -+ +..+..
T Consensus 173 DDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~ 252 (432)
T COG0281 173 DDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYA 252 (432)
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHH
Confidence 4556788888889999999999999999999999999999999999999985 446999999999654 22 222222
Q ss_pred HHHHhcCCCcCCCCceeccCCCcccccCceEEecccccccccccccccccc-eEEEecCCCCC
Q psy8193 273 KYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA-KIILEGANGPT 334 (428)
Q Consensus 273 ~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~a-kiIvegAN~p~ 334 (428)
...+.++ ... . +.-...+|||+=|+..+.+|++-+.+... .+|---|| |+
T Consensus 253 ~a~~~~~--------~~~--~-~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~ 303 (432)
T COG0281 253 KAIEDTG--------ERT--L-DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT 303 (432)
T ss_pred HHHhhhc--------ccc--c-cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC
Confidence 1111221 111 0 12346899999999999999998887743 56666666 44
No 44
>PRK07574 formate dehydrogenase; Provisional
Probab=97.16 E-value=0.0043 Score=64.50 Aligned_cols=108 Identities=11% Similarity=0.106 Sum_probs=71.1
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
+|.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+ ..+.+. . +.. +.+...+.++++ ..
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~-~~dr~-------~~~~~~-~---~~~-------g~~~~~~l~ell-~~ 248 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLH-YTDRH-------RLPEEV-E---QEL-------GLTYHVSFDSLV-SV 248 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECCC-------CCchhh-H---hhc-------CceecCCHHHHh-hc
Confidence 5899999999999999999999999999986 44532 222111 1 111 122222144555 57
Q ss_pred ceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHHCCCc
Q psy8193 301 CDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 348 (428)
Q Consensus 301 ~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~-ea~~iL~~rGI~ 348 (428)
|||++-|.. .+.|+++....++ -.+++.-|-+++ .. +..+.|++.-|.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 999988876 4556666566663 358888888886 33 335778776553
No 45
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.13 E-value=0.006 Score=65.10 Aligned_cols=155 Identities=16% Similarity=0.204 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCc
Q psy8193 203 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 282 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~ 282 (428)
-+.|+..+++ +.+.++++++++|.|.|.+|+.++..|.+.|++|+ +.|. +.+++.+..++.+. .
T Consensus 315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R----------~~~~~~~la~~~~~-~ 378 (477)
T PRK09310 315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNR----------TKAHAEALASRCQG-K 378 (477)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeC----------CHHHHHHHHHHhcc-c
Confidence 3777777775 45678899999999999999999999999999875 6663 44555554443210 0
Q ss_pred CCCCceeccCCCcccccCceEEecccccccccccccccccceEEEecCCCCC-CHHHHHHHHHCCCceeccccccccchh
Q psy8193 283 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPT-TTEADDILRDKGIILAPDVITNAGGVI 361 (428)
Q Consensus 283 ~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~-t~ea~~iL~~rGI~viPD~laNaGGVi 361 (428)
.....+..+ + .++|++|-|+..+..-.+ .+ .++|++-.-+|. |+ --+..+++|+.++.-. +..
T Consensus 379 ----~~~~~~~~~-l-~~~DiVInatP~g~~~~~---~l-~~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G~-----~Ml 442 (477)
T PRK09310 379 ----AFPLESLPE-L-HRIDIIINCLPPSVTIPK---AF-PPCVVDINTLPKHSP-YTQYARSQGSSIIYGY-----EMF 442 (477)
T ss_pred ----eechhHhcc-c-CCCCEEEEcCCCCCcchh---HH-hhhEEeccCCCCCCH-HHHHHHHCcCEEECcH-----HHH
Confidence 000110111 2 479999999875542222 22 248999988885 55 4566788898765321 111
Q ss_pred hhHHHHHhhcccCCCCHHHHHHHHHHHHHHHH
Q psy8193 362 VSYFEWVQNLSNLLWTEQEINLRLNNIICNAF 393 (428)
Q Consensus 362 ~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~ 393 (428)
. +-.-.+-..|+..+..++|+...++.+
T Consensus 443 ~----~Qa~~~f~lw~g~~~~~~~~~~~~~~~ 470 (477)
T PRK09310 443 A----EQALLQFRLWFPTLLFKHLEKTFRRRV 470 (477)
T ss_pred H----HHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 1 111112234666666777776665443
No 46
>PRK13529 malate dehydrogenase; Provisional
Probab=97.13 E-value=0.013 Score=63.19 Aligned_cols=185 Identities=13% Similarity=0.131 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHH
Q psy8193 129 LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF 208 (428)
Q Consensus 129 ~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~ 208 (428)
.+..|-+.+...|++++.... |...|==+|++..- ---+.+.|+.- -.++ .+-..-||-=+.
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~-----i~~F----------nDDiQGTaaV~L 279 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDE-----ICTF----------NDDIQGTGAVTL 279 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccC-----CCee----------ccccchHHHHHH
Confidence 456778888999999998766 55556667887542 23466777641 1122 133466888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHH----CCC------EEEEEEcCCCeeeCCCCCCHHHHHHHHH-h
Q psy8193 209 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA------KIVAIQDDKTTIYNPNGFNIPKLQKYVT-F 277 (428)
Q Consensus 209 ~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga------kvVaVsD~~G~i~n~~GlD~~~l~~~~~-~ 277 (428)
.++..+++..|.++++.||++.|.|..|.++|++|.+ .|. +=+-+.|++|-|+...+ |+..-++... .
T Consensus 280 Agll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~-~l~~~k~~fa~~ 358 (563)
T PRK13529 280 AGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP-DLLDFQKPYARK 358 (563)
T ss_pred HHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCC-cchHHHHHHhhh
Confidence 8999999999999999999999999999999999987 686 23469999999998775 3322222222 2
Q ss_pred cCCCcCCCCceeccCCCccc-ccCceEEecccc-ccccccccccccc----ceEEEecCCC
Q psy8193 278 TRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANG 332 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il-~~~~DIliPaA~-~~~It~~na~~l~----akiIvegAN~ 332 (428)
...+.+++......+..+.+ .++.||||=++. ++.+|++-+.... =.||---+|-
T Consensus 359 ~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 359 REELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred cccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 11111111100001122333 467899999997 7999999887773 3577777774
No 47
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.12 E-value=0.0067 Score=56.01 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=68.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH
Q psy8193 198 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276 (428)
Q Consensus 198 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~ 276 (428)
...++|++.++..+ +.+..+++|++|+|.|.|. +|..+|++|.+.|++| .+++++- +++.
T Consensus 22 ~~~p~~~~a~v~l~----~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V-~v~~r~~----------~~l~---- 82 (168)
T cd01080 22 GFIPCTPAGILELL----KRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATV-TVCHSKT----------KNLK---- 82 (168)
T ss_pred CccCChHHHHHHHH----HHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEE-EEEECCc----------hhHH----
Confidence 45677877776644 4455689999999999998 5999999999999986 4777530 1111
Q ss_pred hcCCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEecCCCC
Q psy8193 277 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGP 333 (428)
Q Consensus 277 ~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIvegAN~p 333 (428)
+ .-.++||+|-|+. .+.|+.+..+. ..+|++-|..+
T Consensus 83 ------------------~-~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 83 ------------------E-HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred ------------------H-HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 1 1236888888886 36788776543 46888888765
No 48
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.11 E-value=0.0015 Score=60.44 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=68.0
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
+.++.|+||.|.|+|++|+.+|+.|...|++|++ .|.+. +... ... .. +.+..+ .++++.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~~--------~~~~--~~~-~~-------~~~~~~-l~ell~ 90 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIG-YDRSP--------KPEE--GAD-EF-------GVEYVS-LDELLA 90 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEE-EESSC--------HHHH--HHH-HT-------TEEESS-HHHHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEE-ecccC--------Chhh--hcc-cc-------cceeee-hhhhcc
Confidence 4579999999999999999999999999999974 44321 1111 111 11 122222 455554
Q ss_pred cCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 299 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 299 ~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
.|||++-+.. .+.|+.+...+++ --+++.-|-+++ ..+| .+.|++.-+
T Consensus 91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i 146 (178)
T PF02826_consen 91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKI 146 (178)
T ss_dssp -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSE
T ss_pred -hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccC
Confidence 6899988776 4666776666664 348888888886 4444 466766543
No 49
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.10 E-value=0.023 Score=59.66 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=86.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHH-HHHHHHHHHhCCCCCCceEEEEeccHH
Q psy8193 157 APDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF-IIGSKIASKINLNIINSKISIQGFGNV 235 (428)
Q Consensus 157 apDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~-~~~~~~~~~~g~~l~g~~vaIqGfGnV 235 (428)
+.+.|+....+..++.+|-+..-. +.|--.+ . ..+..+. .+++.+.+.++ ++.+++|+|.|+|.+
T Consensus 126 a~~~~~~g~~l~~lf~~a~~~~k~----vr~~t~i-----~----~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~i 191 (417)
T TIGR01035 126 AQEEKTVGKVLERLFQKAFSVGKR----VRTETDI-----S----AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEM 191 (417)
T ss_pred HHHcCCchHHHHHHHHHHHHHhhh----hhhhcCC-----C----CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHH
Confidence 456666677888888776543211 1110000 0 1111222 22333334444 578999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceecc--CCCcccccCceEEecccc--cc
Q psy8193 236 GSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN--DSKEFWSIPCDILIPAAI--ED 311 (428)
Q Consensus 236 G~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~--~~~~il~~~~DIliPaA~--~~ 311 (428)
|+.+++.|...|+.-|.|.+. +.+...+..++.+. ..++ +..+.+ .++||+|-|+. ..
T Consensus 192 G~~~a~~L~~~G~~~V~v~~r----------s~~ra~~la~~~g~-------~~i~~~~l~~~l-~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 192 GELVAKHLLRKGVGKILIANR----------TYERAEDLAKELGG-------EAVKFEDLEEYL-AEADIVISSTGAPHP 253 (417)
T ss_pred HHHHHHHHHHCCCCEEEEEeC----------CHHHHHHHHHHcCC-------eEeeHHHHHHHH-hhCCEEEECCCCCCc
Confidence 999999999999443457773 44555555544321 1111 111222 37999999974 55
Q ss_pred cccccccccc-----cceEEEecCCCC-CCHHH
Q psy8193 312 QITINNANNV-----TAKIILEGANGP-TTTEA 338 (428)
Q Consensus 312 ~It~~na~~l-----~akiIvegAN~p-~t~ea 338 (428)
.|+.+..... +..+|++-|+.. +.|+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 6776655443 233899998533 56654
No 50
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=97.10 E-value=0.012 Score=63.89 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHH
Q psy8193 129 LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF 208 (428)
Q Consensus 129 ~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~ 208 (428)
.+-.|-+.+...|++++..-.||..-|==+|++..- ---+.+.|+.- -.++ .+-..-||-=+.
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~~-----i~~F----------nDDiQGTaaV~l 305 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRTT-----HLCF----------NDDIQGTAAVAL 305 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhccC-----CCEe----------ccccchHHHHHH
Confidence 455677888999999999888887777778887643 22356777421 1122 233467888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHH-----CCC------EEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 209 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-----AGA------KIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 209 ~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~Ga------kvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
.++..+++..|.++++.||++.|.|..|.++|++|.+ .|. +=+-+.|++|-|++...-++..-++...+
T Consensus 306 Agll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~ 385 (581)
T PLN03129 306 AGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAH 385 (581)
T ss_pred HHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHh
Confidence 8899999999999999999999999999999999987 475 23468999999998764212222222222
Q ss_pred cCCCcCCCCceeccCCCccc-ccCceEEecccc-cccccccccccc----cceEEEecCCC
Q psy8193 278 TRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANG 332 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il-~~~~DIliPaA~-~~~It~~na~~l----~akiIvegAN~ 332 (428)
.. ....+..+.+ .+++||||=++. ++.+|++-+... +=.||---+|-
T Consensus 386 ~~--------~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 386 DH--------EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred hc--------ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 0111133333 568999999995 799999988777 44688888874
No 51
>PLN03139 formate dehydrogenase; Provisional
Probab=97.08 E-value=0.0053 Score=63.88 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=70.5
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.+|.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+ ..+.+.. ++. +....++.++++ .
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~-~~d~~-------~~~~~~~----~~~-------g~~~~~~l~ell-~ 254 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLL-YHDRL-------KMDPELE----KET-------GAKFEEDLDAML-P 254 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEE-EECCC-------CcchhhH----hhc-------CceecCCHHHHH-h
Confidence 46899999999999999999999999999986 45643 2222211 111 122222245555 4
Q ss_pred CceEEecccc-----cccccccccccc-cceEEEecCCCCC-CHHH-HHHHHHCCCc
Q psy8193 300 PCDILIPAAI-----EDQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGII 348 (428)
Q Consensus 300 ~~DIliPaA~-----~~~It~~na~~l-~akiIvegAN~p~-t~ea-~~iL~~rGI~ 348 (428)
+|||++-|.. .+.|+.+....+ +-.+++.-|=+++ ..+| .+.|++.-|.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 6999998776 444555544554 2457888888886 4443 4677776553
No 52
>PRK12861 malic enzyme; Reviewed
Probab=97.07 E-value=0.0071 Score=67.71 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHH
Q psy8193 135 MRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKI 214 (428)
Q Consensus 135 e~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~ 214 (428)
+.+. .|++.+.+-.|. |==+|+.... ---+.++|+.... -|+. ++-..-||-=+..++..+
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p~--~f~il~~~~~~~~---------ipvf----~DD~qGTa~v~lA~llna 179 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAPE--CFTVERKLRERMK---------IPVF----HDDQHGTAITVSAAFING 179 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCch--HHHHHHHHHhcCC---------CCee----ccccchHHHHHHHHHHHH
Confidence 4456 899999876654 4457776542 2345667764211 1221 234567888888899999
Q ss_pred HHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCC---EEEEEEcCCCeeeCCCC--CCHHHHHHHHHhcCCCcCCCCcee
Q psy8193 215 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNG--FNIPKLQKYVTFTRSIKDFNEGEK 289 (428)
Q Consensus 215 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~n~~G--lD~~~l~~~~~~~g~l~~~~~~~~ 289 (428)
++-.|.++++.||++.|.|..|..++++|.+.|. +| -++|++|-|+.... ++..+.. +.+.+ + .
T Consensus 180 l~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i-~~~D~~Gli~~~r~~~l~~~k~~-~a~~~----~---~-- 248 (764)
T PRK12861 180 LKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENI-WVTDIEGVVYRGRTTLMDPDKER-FAQET----D---A-- 248 (764)
T ss_pred HHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhE-EEEcCCCeeeCCCcccCCHHHHH-HHhhc----C---C--
Confidence 9999999999999999999999999999999998 55 59999999997653 5543322 22221 0 0
Q ss_pred ccCCCcccccCceEEeccccccccccccccccc-ceEEEecCCCC--CCHHHHHHHHHCC
Q psy8193 290 INDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTEADDILRDKG 346 (428)
Q Consensus 290 i~~~~~il~~~~DIliPaA~~~~It~~na~~l~-akiIvegAN~p--~t~ea~~iL~~rG 346 (428)
.+ ..+.+. .+||||=++.++.+|++-+.... -.||---||-- ++|| ++.+.+|
T Consensus 249 ~~-L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe--~a~~~~g 304 (764)
T PRK12861 249 RT-LAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE--LAHATRD 304 (764)
T ss_pred CC-HHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH--HHHhcCC
Confidence 11 334443 36999999999999999888773 35666667633 2554 3344444
No 53
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.05 E-value=0.007 Score=61.65 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
|.+|.|++|.|+|+|++|+.+|+.|...|.+|+ +.|.+. +... ....+ ....+ .++++
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~--------~~~~----~~~~~-------~~~~~-l~ell- 202 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR--------KPEA----EKELG-------AEYRP-LEELL- 202 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC--------Chhh----HHHcC-------CEecC-HHHHH-
Confidence 457899999999999999999999999999986 556421 1111 11111 12222 44554
Q ss_pred cCceEEeccccc-----cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 299 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 299 ~~~DIliPaA~~-----~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
.+||+++-|..- +.|+.+....++ -.+++.-+=+++ ..+| .+.|++.-|
T Consensus 203 ~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 203 RESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred hhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe
Confidence 378999988863 455555555553 357777777775 4444 567766544
No 54
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.03 E-value=0.023 Score=56.63 Aligned_cols=130 Identities=14% Similarity=0.054 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
+.|+..+++. .+.++++++|+|.|.|.+|+.++..|.+.|++=|.|.|+ +.++..++.+..+. .
T Consensus 111 ~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR----------~~~ka~~la~~l~~--~ 174 (284)
T PRK12549 111 WSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV----------DPARAAALADELNA--R 174 (284)
T ss_pred HHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC----------CHHHHHHHHHHHHh--h
Confidence 7888888763 234678899999999999999999999999854568884 45555555443210 1
Q ss_pred CCCceeccCCCccc--ccCceEEeccccccccccc----ccccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 284 FNEGEKINDSKEFW--SIPCDILIPAAIEDQITIN----NANNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 284 ~~~~~~i~~~~~il--~~~~DIliPaA~~~~It~~----na~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
++...... .+++. -.++||+|-|+.-+.-... +...+ +..+|.+-.-+|....--+.-+++|..++
T Consensus 175 ~~~~~~~~-~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~ 247 (284)
T PRK12549 175 FPAARATA-GSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTL 247 (284)
T ss_pred CCCeEEEe-ccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEe
Confidence 11112221 12221 1479999999754432111 11123 34588899988874444555678888765
No 55
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.02 E-value=0.0044 Score=61.88 Aligned_cols=95 Identities=16% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
-.++|..|+...+ ++++.+++|++|+|+|.|+ ||+.+|.+|.++|++|+ +++++. ..|.
T Consensus 137 ~~PcTp~ai~~ll----~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~----- 196 (286)
T PRK14175 137 FVPCTPLGIMEIL----KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMA----- 196 (286)
T ss_pred CCCCcHHHHHHHH----HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHH-----
Confidence 3578988887654 5678899999999999998 99999999999999985 777531 0011
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEecCCCC
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGP 333 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIvegAN~p 333 (428)
+ ...++||+|-|.. .+.|+++.... ..+|++.+.++
T Consensus 197 -----------------~-~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~ 233 (286)
T PRK14175 197 -----------------S-YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP 233 (286)
T ss_pred -----------------H-HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence 1 2247899998886 55788875432 46888888776
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.02 E-value=0.0019 Score=63.88 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCceEEEEeccHHHHHHHHHHHH--CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFK--AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~--~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
++.+||.|+|+|++|+..++.|.+ .+.++++|+| -+.++..+..++.+. ....++.++++ .
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d----------r~~~~a~~~a~~~g~------~~~~~~~eell-~ 66 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV----------RDPQRHADFIWGLRR------PPPVVPLDQLA-T 66 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC----------CCHHHHHHHHHhcCC------CcccCCHHHHh-c
Confidence 566899999999999999999886 4789999999 456666665554331 12223255666 4
Q ss_pred CceEEecccccccccccccccc---cceEEEecCCCCC-CHHHHHHHHHCCCce-ec
Q psy8193 300 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPT-TTEADDILRDKGIIL-AP 351 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~na~~l---~akiIvegAN~p~-t~ea~~iL~~rGI~v-iP 351 (428)
++|+++.|+..... .+-+... +..++++...... ..+..+..+++|+.+ +|
T Consensus 67 ~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 67 HADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred CCCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 78999999976554 3333322 3446766322111 244456677888865 54
No 57
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.02 E-value=0.0023 Score=63.86 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=102.5
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc--cCce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~--~~~D 302 (428)
++|.|+|+|++|..+|+.|.+.|.+|+ +.| .+.+++.++.+... .. .++.+++.+ .++|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~d----------r~~~~~~~l~~~g~--~~------~~s~~~~~~~~~~~d 61 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYD----------HDQDAVKAMKEDRT--TG------VANLRELSQRLSAPR 61 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHcCC--cc------cCCHHHHHhhcCCCC
Confidence 379999999999999999999999985 567 56667666654321 11 111223322 3689
Q ss_pred EEecccccccccccc----cccc-cceEEEecCCCC--CCHHHHHHHHHCCCceeccccc------------cccchhhh
Q psy8193 303 ILIPAAIEDQITINN----ANNV-TAKIILEGANGP--TTTEADDILRDKGIILAPDVIT------------NAGGVIVS 363 (428)
Q Consensus 303 IliPaA~~~~It~~n----a~~l-~akiIvegAN~p--~t~ea~~iL~~rGI~viPD~la------------NaGGVi~s 363 (428)
+++-|.... ...+. ++.+ +-++|++..|.. .|.+..+.++++|+.++--.+. ..||=- .
T Consensus 62 vIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~-~ 139 (298)
T TIGR00872 62 VVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDG-E 139 (298)
T ss_pred EEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCH-H
Confidence 988776554 32332 2333 336899999984 4667778899999987754433 222211 1
Q ss_pred HHHHHh----hcc----cCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHH
Q psy8193 364 YFEWVQ----NLS----NLLW--------TEQEINLRLNNIICNAFDAIWELANTK--KVSLRTAAFI 413 (428)
Q Consensus 364 ~~E~~q----n~~----~~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~ 413 (428)
.++-++ .+. +..+ ..+.++.-+...+-.++.+.+..+++. ++++.+.+.+
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i 207 (298)
T TIGR00872 140 AFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV 207 (298)
T ss_pred HHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 122221 111 1111 123455556666667888888898887 5687777655
No 58
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.01 E-value=0.0057 Score=63.52 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 203 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+-=++..+-.+.++.|.++.|+||.|+|+|+||+.+|+.|...|.+|+ +.|.
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp 147 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDP 147 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECC
Confidence 3333444445555667889999999999999999999999999999996 4564
No 59
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.01 E-value=0.021 Score=59.94 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=70.3
Q ss_pred HHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceec
Q psy8193 211 GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 290 (428)
Q Consensus 211 ~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i 290 (428)
++.+.+.++ ++.+++|+|.|.|.+|+.+++.|...|+.-|.|++ .+.+...++.++.+. .....
T Consensus 170 v~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~----------r~~~ra~~la~~~g~-----~~~~~ 233 (423)
T PRK00045 170 VELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVAN----------RTLERAEELAEEFGG-----EAIPL 233 (423)
T ss_pred HHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEe----------CCHHHHHHHHHHcCC-----cEeeH
Confidence 443333334 67899999999999999999999999985445777 355666555555431 01111
Q ss_pred cCCCcccccCceEEecccc--cccccccccccc------cceEEEecCCCC-CCHH
Q psy8193 291 NDSKEFWSIPCDILIPAAI--EDQITINNANNV------TAKIILEGANGP-TTTE 337 (428)
Q Consensus 291 ~~~~~il~~~~DIliPaA~--~~~It~~na~~l------~akiIvegAN~p-~t~e 337 (428)
++..+.+ .++||+|-|+. ...|+.+..... +-.++++-|+-. +.|+
T Consensus 234 ~~~~~~l-~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 234 DELPEAL-AEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred HHHHHHh-ccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 1111222 37899999975 456776655442 346899998644 4554
No 60
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.97 E-value=0.0071 Score=67.69 Aligned_cols=122 Identities=22% Similarity=0.220 Sum_probs=91.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCC---EEEEEEcCCCeeeCCC--CCCHHHHH
Q psy8193 198 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKLQ 272 (428)
Q Consensus 198 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~n~~--GlD~~~l~ 272 (428)
+-..-||-=+..++..+++-.|.++++.||++.|.|..|.+++++|...|. +| -++|++|.|+... +++..+..
T Consensus 159 DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i-~~~D~~G~i~~~r~~~~~~~k~~ 237 (752)
T PRK07232 159 DDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENI-IVCDSKGVIYKGRTEGMDEWKAA 237 (752)
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccE-EEEcCCCeecCCCcccccHHHHH
Confidence 445678888888999999999999999999999999999999999999998 45 6999999999865 34433321
Q ss_pred HHHHhcCCCcCCCCceeccCCCcccccCceEEeccccccccccccccccc-ceEEEecCCC
Q psy8193 273 KYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANG 332 (428)
Q Consensus 273 ~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~-akiIvegAN~ 332 (428)
+.+.+ +.. + ..+.+.. +||||=++.++.+|++-+.... -.||---||-
T Consensus 238 -~a~~~-------~~~--~-l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 286 (752)
T PRK07232 238 -YAVDT-------DAR--T-LAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANP 286 (752)
T ss_pred -HhccC-------CCC--C-HHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCC
Confidence 21111 001 1 3344443 8999999999999999888773 3566666763
No 61
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.96 E-value=0.0044 Score=61.64 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHC----CC------EEEEEEcCCCeeeCCCCCCHHHH
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA------KIVAIQDDKTTIYNPNGFNIPKL 271 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kvVaVsD~~G~i~n~~GlD~~~l 271 (428)
-||-=+..++..+++..|.+|++.||+|.|.|..|.++|++|.+. |. +-+-+.|++|-|++... |+..-
T Consensus 3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~-~l~~~ 81 (279)
T cd05312 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLTPF 81 (279)
T ss_pred hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCC-cchHH
Confidence 366667778888899889999999999999999999999999876 87 34469999999998664 22222
Q ss_pred H-HHHHhcCCCcCCCCceeccCCCccc-ccCceEEecccc-ccccccccccccc----ceEEEecCCC
Q psy8193 272 Q-KYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANG 332 (428)
Q Consensus 272 ~-~~~~~~g~l~~~~~~~~i~~~~~il-~~~~DIliPaA~-~~~It~~na~~l~----akiIvegAN~ 332 (428)
+ .+.+.... ....+ ..+.+ ..++||||=++. ++.+|++-+.... =.||---+|-
T Consensus 82 ~~~~a~~~~~------~~~~~-L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 82 KKPFARKDEE------KEGKS-LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred HHHHHhhcCc------ccCCC-HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 2 22222110 01111 33333 469999999995 7999999888773 4677777774
No 62
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.95 E-value=0.0017 Score=63.89 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHC--CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
+||.|+|+|++|+..++.|.+. +.++++|+| .+.+...++.++.+ ....++.++++ .++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d----------~~~~~a~~~a~~~~-------~~~~~~~~ell-~~~D 63 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYD----------RNLEKAENLASKTG-------AKACLSIDELV-EDVD 63 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEEC----------CCHHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence 4899999999999999988875 588899999 45556555544322 22333356677 6899
Q ss_pred EEecccccccccccccccc---cceEEEecC----CCCCCHHHHHHHHHCCCcee
Q psy8193 303 ILIPAAIEDQITINNANNV---TAKIILEGA----NGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 303 IliPaA~~~~It~~na~~l---~akiIvegA----N~p~t~ea~~iL~~rGI~vi 350 (428)
+++.|+..... .+.+..+ +..+|++.. +-+...+..+..+++|+.+.
T Consensus 64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 99999965554 3333322 345666543 22222344556777786543
No 63
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.92 E-value=0.025 Score=56.45 Aligned_cols=168 Identities=16% Similarity=0.207 Sum_probs=100.8
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc-c-CceE
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I-PCDI 303 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~-~-~~DI 303 (428)
+|.++|+|++|+.+|+.|.+.|..|+ |.| .+.+++.+..+. | ....++++++.+ . .+|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~d----------r~~~~~~~~~~~-g-------~~~~~s~~~~~~~~~~adv 62 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYD----------VNQEAVDVAGKL-G-------ITARHSLEELVSKLEAPRT 62 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHC-C-------CeecCCHHHHHHhCCCCCE
Confidence 69999999999999999999999986 677 345555554332 2 222222444443 2 2788
Q ss_pred Eeccccccccccc----ccccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccchh---------h----h
Q psy8193 304 LIPAAIEDQITIN----NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI---------V----S 363 (428)
Q Consensus 304 liPaA~~~~It~~----na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGVi---------~----s 363 (428)
++-|........+ -.+.+ .-++|++-++... +.+..+.+.++|+.|+--.+. ||+. + .
T Consensus 63 Vi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~--G~~~~a~~g~~~~~gG~~~ 140 (299)
T PRK12490 63 IWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTS--GGVWGLRNGYCLMVGGDKE 140 (299)
T ss_pred EEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCC--CCHHHHhcCCeEEecCCHH
Confidence 8877765422222 22233 2368888876543 456667889999988743333 2221 0 1
Q ss_pred HHHHH----hhccc----CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q psy8193 364 YFEWV----QNLSN----LLW--------TEQEINLRLNNIICNAFDAIWELANTKK--VSLRTAAFII 414 (428)
Q Consensus 364 ~~E~~----qn~~~----~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 414 (428)
.|+.+ +.+.. .++ ..+-++.-+...+..++.+.+..+++.+ +++.+...++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 141 IYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred HHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 12322 22221 111 1233455555666678888889999988 8887776554
No 64
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.90 E-value=0.0018 Score=53.11 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=58.9
Q ss_pred eEEEEeccHHHHHHHHHHHHCC---CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceecc-CCCcccccCc
Q psy8193 226 KISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN-DSKEFWSIPC 301 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~G---akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~-~~~~il~~~~ 301 (428)
||.|+|+||+|..+++-|.+.| .+|.-+++ -+.+++.++.++.+ ..... ++.+++. ++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~----------r~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~a 62 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS----------RSPEKAAELAKEYG-------VQATADDNEEAAQ-EA 62 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE----------SSHHHHHHHHHHCT-------TEEESEEHHHHHH-HT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc----------CcHHHHHHHHHhhc-------cccccCChHHhhc-cC
Confidence 6889999999999999999999 88875657 57788888877654 22221 1445554 89
Q ss_pred eEEecccccccccccccccc----cceEEEecCC
Q psy8193 302 DILIPAAIEDQITINNANNV----TAKIILEGAN 331 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l----~akiIvegAN 331 (428)
||++-|-....+.+ -+..+ +-|+|+.-+|
T Consensus 63 dvvilav~p~~~~~-v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 63 DVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp SEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEEST
T ss_pred CEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCC
Confidence 99999987666543 22222 4556665554
No 65
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.90 E-value=0.022 Score=60.79 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=108.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc--Cce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~--~~D 302 (428)
.+|.|+|.|++|+++|+.|.+.|.+| .+.| .+.++..++.+....- ++ ..+..++.+++... ++|
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V-~v~d----------r~~~~~~~l~~~~~~~-g~-~i~~~~s~~e~v~~l~~~d 68 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKI-SVYN----------RTYEKTEEFVKKAKEG-NT-RVKGYHTLEELVNSLKKPR 68 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeE-EEEe----------CCHHHHHHHHHhhhhc-CC-cceecCCHHHHHhcCCCCC
Confidence 37999999999999999999999987 4777 5667766665431100 11 01122224455532 688
Q ss_pred EEeccccccccccc----ccccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccchh-------------h
Q psy8193 303 ILIPAAIEDQITIN----NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI-------------V 362 (428)
Q Consensus 303 IliPaA~~~~It~~----na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGVi-------------~ 362 (428)
+++-|........+ ..+.+ .-++|+++.|.-. |.+-.+.+.++||.|+=-.+. ||.- -
T Consensus 69 ~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVS--GG~~gA~~G~~lm~GG~~ 146 (470)
T PTZ00142 69 KVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVS--GGEEGARYGPSLMPGGNK 146 (470)
T ss_pred EEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCC--CCHHHHhcCCEEEEeCCH
Confidence 77766444433333 33334 3579999999853 566678899999999744433 4432 0
Q ss_pred hHHHHHhh----ccc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q psy8193 363 SYFEWVQN----LSN-------LLW--------TEQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 414 (428)
Q Consensus 363 s~~E~~qn----~~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 414 (428)
..|+.++. +.. ..| -..-|+..++.-+-..+.+.++.++ +.++++.+.+.++
T Consensus 147 ~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 147 EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 11232221 110 111 1245666677777788888999987 6888888776554
No 66
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.88 E-value=0.017 Score=53.72 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCC
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 280 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~ 280 (428)
-|+.-.+..++..++++|.++++++++|.|. |.+|+.+++.|.+.|++|+ +.++ +.+++.+..+....
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R----------~~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGR----------DLERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHHHHHh
Confidence 5778888888888988899999999999996 9999999999999999886 4443 34444444332110
Q ss_pred CcCCCCceec--cCCCccc--ccCceEEecccccccccccccc-ccc-ceEEEecCCCC-CCHHH
Q psy8193 281 IKDFNEGEKI--NDSKEFW--SIPCDILIPAAIEDQITINNAN-NVT-AKIILEGANGP-TTTEA 338 (428)
Q Consensus 281 l~~~~~~~~i--~~~~~il--~~~~DIliPaA~~~~It~~na~-~l~-akiIvegAN~p-~t~ea 338 (428)
..+. ..... .+.+++. -.+||++|-|+..+..+..... ..+ .++|++-+..| ++++.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~ 138 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG 138 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence 0000 01111 1122222 1479999999876553222222 222 46888866665 56653
No 67
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.88 E-value=0.0034 Score=61.57 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCE----------EEEEEcCCCeeeCCCC-CCHHH
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK----------IVAIQDDKTTIYNPNG-FNIPK 270 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak----------vVaVsD~~G~i~n~~G-lD~~~ 270 (428)
-||-=+..++..+++-.|.++++.||++.|.|..|.++|++|.+.+.+ =+-+.|++|-|++... ++..+
T Consensus 3 GTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~ 82 (254)
T cd00762 3 GTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNE 82 (254)
T ss_pred hhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHH
Confidence 366666778888898889999999999999999999999999886653 3469999999998764 44422
Q ss_pred HH--HHHHhcCCCcCCCCceeccCCCccc-ccCceEEecccc-ccccccccccccc----ceEEEecCCC
Q psy8193 271 LQ--KYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANG 332 (428)
Q Consensus 271 l~--~~~~~~g~l~~~~~~~~i~~~~~il-~~~~DIliPaA~-~~~It~~na~~l~----akiIvegAN~ 332 (428)
.. ++.+.. .. ..+..+.+ ..++||||=++. ++.+|++-+.... =.||---+|-
T Consensus 83 ~~~~~~~~~~--------~~-~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 143 (254)
T cd00762 83 YHLARFANPE--------RE-SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNP 143 (254)
T ss_pred HHHHHHcCcc--------cc-cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCc
Confidence 21 111110 01 11133333 468999999888 9999999887773 4677777774
No 68
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.88 E-value=0.024 Score=55.82 Aligned_cols=129 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCc
Q psy8193 203 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 282 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~ 282 (428)
-+.|...+++. .+...++++++|.|.|.+|+.++..|.+.|++|+ |.++ +.+++.++.++...
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R----------~~~~~~~la~~~~~-- 162 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANR----------TVSKAEELAERFQR-- 162 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeC----------CHHHHHHHHHHHhh--
Confidence 47787777653 3445678999999999999999999999998764 7763 44555555443211
Q ss_pred CCCCceeccCCCcccccCceEEeccccccccccc---c--cccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 283 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN---N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 283 ~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~---n--a~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
+......+ .++....++||+|-|+.-+.-... . ...+ .-++|++-.-.|....-.+..+++|+.++
T Consensus 163 -~~~~~~~~-~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 163 -YGEIQAFS-MDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTKTI 234 (270)
T ss_pred -cCceEEec-hhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeee
Confidence 11112222 222222479999999975432111 1 1123 23588998888752245667788998765
No 69
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0088 Score=60.81 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=65.0
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
|.++.|+||-|+|||++|+.+|+.|...|.+|+ ..|.. .. .+ .....+...+++-+++|
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~-~~d~~------~~---~~----------~~~~~~~~~~~~Ld~lL- 195 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI-GYDPY------SP---RE----------RAGVDGVVGVDSLDELL- 195 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEE-EECCC------Cc---hh----------hhccccceecccHHHHH-
Confidence 457899999999999999999999999999997 44431 00 00 00001122222133444
Q ss_pred cCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 299 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 299 ~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
..|||++-... .+.|+.+...++| --+++..|=+++ ..+| .+.|++.-|
T Consensus 196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 35676665443 4556666666663 227777777775 3333 456655433
No 70
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.85 E-value=0.044 Score=54.68 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=98.2
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEe
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 305 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIli 305 (428)
+|.|+|.|++|..+|+.|.+.|.+|+ +.| .+.+++.+..+.. ....+++.+.. .+||+++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d----------~~~~~~~~~~~~g--------~~~~~s~~~~~-~~aDvVi 62 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFD----------VNPQAVDALVDKG--------ATPAASPAQAA-AGAEFVI 62 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHcC--------CcccCCHHHHH-hcCCEEE
Confidence 79999999999999999999999874 667 4556665554431 12222133333 4789999
Q ss_pred cccccccc-----ccc--ccccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccchh----------h---
Q psy8193 306 PAAIEDQI-----TIN--NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI----------V--- 362 (428)
Q Consensus 306 PaA~~~~I-----t~~--na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGVi----------~--- 362 (428)
-|...... ... -.+.+ +-++|++-...+. +.+..+.|.++|+.|+=-.+. ||.. +
T Consensus 63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~--g~~~~a~~g~l~~~~gg~ 140 (296)
T PRK15461 63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVG--RTSDNAITGTLLLLAGGT 140 (296)
T ss_pred EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCC--CCHHHHHhCcEEEEECCC
Confidence 88765532 211 12223 3467787777664 456678899999887622221 2221 1
Q ss_pred -hHHHHHhh----ccc-CCCC--------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8193 363 -SYFEWVQN----LSN-LLWT--------EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFII 414 (428)
Q Consensus 363 -s~~E~~qn----~~~-~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 414 (428)
..+|.++. +.. .+|- .+-++.-+...+...+.+.+..+++.|+++.....++
T Consensus 141 ~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 141 AEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11222221 111 1111 1122333444445566788889999999988765444
No 71
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.011 Score=57.48 Aligned_cols=167 Identities=21% Similarity=0.303 Sum_probs=107.8
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc---ccC--
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW---SIP-- 300 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il---~~~-- 300 (428)
++-++|+|.+|.++++.|.+.|..|| +.| +|.+++.+++... ++..++.++++ ..+
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD----------~n~~av~~~~~~g--------a~~a~sl~el~~~L~~pr~ 62 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVV-GYD----------VNQTAVEELKDEG--------ATGAASLDELVAKLSAPRI 62 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEE-EEc----------CCHHHHHHHHhcC--------CccccCHHHHHHhcCCCcE
Confidence 56789999999999999999999997 667 7888888887653 12111122222 222
Q ss_pred ceEEeccc-cccccccccccccc-ceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccchhhhHH---------HH
Q psy8193 301 CDILIPAA-IEDQITINNANNVT-AKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIVSYF---------EW 367 (428)
Q Consensus 301 ~DIliPaA-~~~~It~~na~~l~-akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGVi~s~~---------E~ 367 (428)
+=+.+|++ +.+.+=.+-++.+. --+|++|.|.-. +..-.+.|+++||.++ =.-.+||+--.-. ||
T Consensus 63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~G~~~G~~lMiGG~~~ 140 (300)
T COG1023 63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVWGAERGYCLMIGGDEE 140 (300)
T ss_pred EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCchhhhcCceEEecCcHH
Confidence 34678887 55555556666664 479999999987 3444568999999987 3466788732110 00
Q ss_pred -Hhhc-----------ccCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHH
Q psy8193 368 -VQNL-----------SNLLW--------TEQEINLRLNNIICNAFDAIWELANT--KKVSLRTAAFI 413 (428)
Q Consensus 368 -~qn~-----------~~~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~ 413 (428)
++.+ .++-+ -..-|+..+|.=|-+++.+=++.-++ ++.++.+.|-+
T Consensus 141 a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 141 AVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred HHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 0000 00000 02456677777777888887777765 55677776643
No 72
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.82 E-value=0.015 Score=59.49 Aligned_cols=139 Identities=8% Similarity=0.122 Sum_probs=85.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHH
Q psy8193 157 APDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVG 236 (428)
Q Consensus 157 apDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG 236 (428)
|-+.|+....+..++.. .+-+||-+-.-- .-...+..+.+++..+++.+ .++++++|.|+|.|.+|
T Consensus 121 A~~~g~~g~~L~~lf~~----------A~~~aKrVRteT---~I~~~~vSv~s~av~~~~~~-~~l~~k~vLvIGaGem~ 186 (338)
T PRK00676 121 AARERKLPFALHFLFQK----------ALKEGKVFRSKG---GAPYAEVTIESVVQQELRRR-QKSKKASLLFIGYSEIN 186 (338)
T ss_pred HHHcCCchHHHHHHHHH----------HHHHHHHHhhhc---CCCCCCcCHHHHHHHHHHHh-CCccCCEEEEEcccHHH
Confidence 55667777777777654 222333321100 00112333444444445555 46899999999999999
Q ss_pred HHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEecc-----cccc
Q psy8193 237 SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPA-----AIED 311 (428)
Q Consensus 237 ~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPa-----A~~~ 311 (428)
+-+++.|.+.|++-|.|+.++-.. ++.+.+ + .+.++ +..++||+|-| +...
T Consensus 187 ~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~-------------~-~~~~~-----~~~~~DvVIs~t~~Tas~~p 242 (338)
T PRK00676 187 RKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV-------------V-REELS-----FQDPYDVIFFGSSESAYAFP 242 (338)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccc-----cchhhh-------------h-hhhhh-----cccCCCEEEEcCCcCCCCCc
Confidence 999999999997656788876310 000000 0 00111 23578999954 5677
Q ss_pred cccccccccccceEEEecCCCC
Q psy8193 312 QITINNANNVTAKIILEGANGP 333 (428)
Q Consensus 312 ~It~~na~~l~akiIvegAN~p 333 (428)
.|+.+.......|++++-|+-.
T Consensus 243 ~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 243 HLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred eeeHHHHhhccCcEEEEecCCC
Confidence 8888877666568999998855
No 73
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.80 E-value=0.027 Score=55.79 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCC-CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC
Q psy8193 203 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l 281 (428)
.+.|...+++. ..+.++++++|+|.|.|.+|+.+++.|.+.| .+| .|.++ +.+++.+..++....
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V-~v~~R----------~~~~a~~l~~~~~~~ 170 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEI-TIVNR----------TVERAEELAKLFGAL 170 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEE-EEEeC----------CHHHHHHHHHHhhhc
Confidence 46777666653 2466889999999999999999999999999 555 57774 345555554433211
Q ss_pred cCCCCcee-ccCCCcccccCceEEeccccccccccc-----ccccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 282 KDFNEGEK-INDSKEFWSIPCDILIPAAIEDQITIN-----NANNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 282 ~~~~~~~~-i~~~~~il~~~~DIliPaA~~~~It~~-----na~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
. .... .+ ..+.+ .++||+|-|+..+.-... ....+ +-++|++..-+|....-.+.-+++|+.++
T Consensus 171 ~---~~~~~~~-~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 171 G---KAELDLE-LQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTI 241 (278)
T ss_pred c---ceeeccc-chhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeec
Confidence 0 0111 11 11222 468999999976553211 11223 34689999988863334455677888665
No 74
>PLN02928 oxidoreductase family protein
Probab=96.78 E-value=0.027 Score=57.76 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCC--CceeccCCCccc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--EGEKINDSKEFW 297 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~--~~~~i~~~~~il 297 (428)
.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+.. + +......+.. ..+..+. .....+ .++++
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~-~dr~~~---~---~~~~~~~~~~--~~~~~~~~~~~~~~~-L~ell 224 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA-TRRSWT---S---EPEDGLLIPN--GDVDDLVDEKGGHED-IYEFA 224 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE-ECCCCC---h---hhhhhhcccc--ccccccccccCcccC-HHHHH
Confidence 468999999999999999999999999999974 454310 0 0000000000 0000000 011112 34444
Q ss_pred ccCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCCc-eecccc
Q psy8193 298 SIPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII-LAPDVI 354 (428)
Q Consensus 298 ~~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI~-viPD~l 354 (428)
..|||++-|.. .+.|+.+...+++ -.+++.-|=+++ ..+| .+.|++.-|. ..=|+.
T Consensus 225 -~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 225 -GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred -hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 36899998875 4566666666664 468888888886 5444 4677665442 333443
No 75
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.73 E-value=0.018 Score=62.19 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=89.5
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
|.+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.. .+.+.. .+. +.+..++.++++
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~--------~~~~~~----~~~-------g~~~~~~l~ell- 191 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLA-YDPY--------ISPERA----EQL-------GVELVDDLDELL- 191 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCC--------CChhHH----Hhc-------CCEEcCCHHHHH-
Confidence 4578999999999999999999999999999864 4432 121111 111 122232244555
Q ss_pred cCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCCc-eeccccccccchhhhHHHHHh
Q psy8193 299 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII-LAPDVITNAGGVIVSYFEWVQ 369 (428)
Q Consensus 299 ~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI~-viPD~laNaGGVi~s~~E~~q 369 (428)
.+||+++-|.. .+.|+++....++ -.+++.-|=+++ ..+| .+.|++..|. ..=|+..+=--. -+.+--..
T Consensus 192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~ 270 (525)
T TIGR01327 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD 270 (525)
T ss_pred hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence 37899887765 4456555555552 357788888885 4444 5778777664 223433222110 11111011
Q ss_pred hc---ccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy8193 370 NL---SNLLWTEQEINLRLNNIICNAFDAIW 397 (428)
Q Consensus 370 n~---~~~~w~~e~v~~~l~~~m~~~~~~v~ 397 (428)
|. .|..|.-++...++...+.+++.+.+
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 21 35555555666666555545544443
No 76
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.73 E-value=0.056 Score=53.54 Aligned_cols=169 Identities=17% Similarity=0.238 Sum_probs=94.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
++|.|+|+|.+|+.+|+.|.+.|.+|+ +.| .+.+.+.+..+. + ....++.++++ .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d----------~~~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYD----------RNPEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 579999999999999999999999885 566 344444444332 1 22222233444 479999
Q ss_pred eccccccccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHHCCCceecccccc-------------ccchh
Q psy8193 305 IPAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITN-------------AGGVI 361 (428)
Q Consensus 305 iPaA~~~~It~~-------na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laN-------------aGGVi 361 (428)
+-|......... ..+.+ .-++|++...... +.+..+.+.++|+.++...+.- .|| -
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg-~ 141 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGG-D 141 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECC-C
Confidence 998764332221 12233 2467887665543 3355667888898775443320 112 1
Q ss_pred hhHHHHHhh----ccc-CC----CCHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8193 362 VSYFEWVQN----LSN-LL----WTEQE----INLRLNNIICNAFDAIWELANTKKVSLRTAAFII 414 (428)
Q Consensus 362 ~s~~E~~qn----~~~-~~----w~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 414 (428)
-..+++++. ... .. ...-. ++.-+.......+.+.+..+++.++++.+....+
T Consensus 142 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l 207 (296)
T PRK11559 142 KAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAI 207 (296)
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112333322 111 00 01112 2222233333457888899999999987665444
No 77
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.71 E-value=0.061 Score=53.23 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=96.3
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEe
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 305 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIli 305 (428)
+|.|+|+|++|+.+|+.|.+.|.+|+ +.| .+.+++.+..+. | ....++..+.+ .+||+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~d----------r~~~~~~~~~~~-g-------~~~~~~~~~~~-~~aDivi 60 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTT----------IGPEVADELLAA-G-------AVTAETARQVT-EQADVIF 60 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC-C-------CcccCCHHHHH-hcCCEEE
Confidence 58899999999999999999999985 666 344555444432 2 11122133333 4899999
Q ss_pred cccccccccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccch----------hh---
Q psy8193 306 PAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGV----------IV--- 362 (428)
Q Consensus 306 PaA~~~~It~~n-------a~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGV----------i~--- 362 (428)
-|.......... ...+ .-++|+...+... +.+..+.++++|+.++.-.+. |+. ++
T Consensus 61 ~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~--g~~~~a~~g~l~i~~gg~ 138 (291)
T TIGR01505 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS--GGEIGAIEGTLSIMVGGD 138 (291)
T ss_pred EecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCC--CCHHHHhcCCEEEEecCC
Confidence 997654222211 1222 3468887665543 235567788899887754432 221 11
Q ss_pred -hHHHH----Hhhccc-CCC----CHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8193 363 -SYFEW----VQNLSN-LLW----TEQ----EINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 415 (428)
Q Consensus 363 -s~~E~----~qn~~~-~~w----~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a 415 (428)
..++. ++.+.. ..+ ..- -++.-+.......+.+.+..+++.|+++.+....+.
T Consensus 139 ~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 139 QAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 11121 222111 111 011 222333334445588899999999999988876664
No 78
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.69 E-value=0.065 Score=56.32 Aligned_cols=148 Identities=15% Similarity=0.111 Sum_probs=87.7
Q ss_pred cCCCCCCCHHHHHHHHHHhhhhcCCcCCceeeccccc--CCCcCCCCChhHHHHHH-HHHHHHHHhCCCCCCceEEEEec
Q psy8193 156 PAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPIS--IGGSFGRQKATGRGVFI-IGSKIASKINLNIINSKISIQGF 232 (428)
Q Consensus 156 papDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~--~GGs~~r~~aTg~Gv~~-~~~~~~~~~g~~l~g~~vaIqGf 232 (428)
.|-+.||....+..+++.- +-+||-+- .+- ...+.+|.+ +++.+-+.+ .++.+++|.|+|.
T Consensus 126 ~A~~~g~~g~~L~~lf~~A----------~~~aKrVrteT~I-----~~~~vSv~~~Av~la~~~~-~~l~~kkvlviGa 189 (414)
T PRK13940 126 LSKKNHAIGKELDRVFQKV----------FATAKRVRSETRI-----GHCPVSVAFSAITLAKRQL-DNISSKNVLIIGA 189 (414)
T ss_pred HHHHcCCchHHHHHHHHHH----------HHHHHHHHhccCC-----CCCCcCHHHHHHHHHHHHh-cCccCCEEEEEcC
Confidence 3667777777888877652 22233221 000 011223333 334333333 3689999999999
Q ss_pred cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc--cCceEEecccc-
Q psy8193 233 GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCDILIPAAI- 309 (428)
Q Consensus 233 GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~--~~~DIliPaA~- 309 (428)
|.+|+.+++.|.+.|++-+.|+.++ .++..++.++.+. ...++ .+++.+ .++||+|-|+.
T Consensus 190 G~~a~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~~------~~~~~-~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 190 GQTGELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFRN------ASAHY-LSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhcC------CeEec-HHHHHHHhccCCEEEECcCC
Confidence 9999999999999998666788853 3455555554321 12222 222221 47999999986
Q ss_pred -cccccccccccccceEEEecCCCC-CCHH
Q psy8193 310 -EDQITINNANNVTAKIILEGANGP-TTTE 337 (428)
Q Consensus 310 -~~~It~~na~~l~akiIvegAN~p-~t~e 337 (428)
..+|+.+.... +-.++++-|... +.|+
T Consensus 253 ~~~vi~~~~~~~-~~~~~iDLavPRdidp~ 281 (414)
T PRK13940 253 LEYIVTCKYVGD-KPRVFIDISIPQALDPK 281 (414)
T ss_pred CCeeECHHHhCC-CCeEEEEeCCCCCCCcc
Confidence 56677655432 345888887754 4543
No 79
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.68 E-value=0.0032 Score=61.70 Aligned_cols=109 Identities=15% Similarity=0.212 Sum_probs=67.7
Q ss_pred ceEEEEec-cHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGf-GnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
++|+|.|+ |.+|+..++.+.+ .+.++++++|.+..- .... .+ + +....++.++++. ++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~----------~~~~-~~------~-~i~~~~dl~~ll~-~~D 62 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP----------LVGQ-GA------L-GVAITDDLEAVLA-DAD 62 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc----------cccc-CC------C-CccccCCHHHhcc-CCC
Confidence 58999998 9999999999886 579999999964211 1110 11 1 1212232445564 799
Q ss_pred EEecccccccccccccccc---cceEEEecCCCCCCH-HHHHHH---HHCCCceeccccc
Q psy8193 303 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTT-EADDIL---RDKGIILAPDVIT 355 (428)
Q Consensus 303 IliPaA~~~~It~~na~~l---~akiIvegAN~p~t~-ea~~iL---~~rGI~viPD~la 355 (428)
++|.|+.++.. .+++... +..+|++ ..-+++ +++++. ++.++++.|.+--
T Consensus 63 vVid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 63 VLIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred EEEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 99999976654 4444443 5667776 333444 343332 2357778877754
No 80
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.68 E-value=0.019 Score=58.01 Aligned_cols=111 Identities=23% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.+|.|+||.|+|||++|+.+|+.+...|.+|++ .|..+. + ... ++ +..+ .++++.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~-~d~~~~-------~--------~~~----~~---~~~~-l~ell~- 195 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY-YSTSGK-------N--------KNE----EY---ERVS-LEELLK- 195 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE-ECCCcc-------c--------ccc----Cc---eeec-HHHHhh-
Confidence 468999999999999999999999999999974 454321 0 000 11 1222 445553
Q ss_pred CceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCCceeccccc
Q psy8193 300 PCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGIILAPDVIT 355 (428)
Q Consensus 300 ~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI~viPD~la 355 (428)
.||+++-+.. .+.|+.+...++| -.+++.-|=+++ ..+| .+.|++.-|...=|++.
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~ 259 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE 259 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence 6888877664 3456666666663 467888888886 4444 57787765553445443
No 81
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.68 E-value=0.036 Score=56.04 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=68.2
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
++.|+||.|+|+|++|+.+|+.+...|.+|++. |... +... . .. ..+ .++++. .
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~~~-----------~---~~-----~~~-l~ell~-~ 197 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----ASVC-----------R---EG-----YTP-FEEVLK-Q 197 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----cccc-----------c---cc-----cCC-HHHHHH-h
Confidence 689999999999999999999999999999754 3221 0000 0 00 112 345553 6
Q ss_pred ceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCCc
Q psy8193 301 CDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII 348 (428)
Q Consensus 301 ~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI~ 348 (428)
|||++-+.. .+.|+.+...++| --+++.-|=+++ ..+| .+.|++.-|.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 888887664 4556666666663 457888888886 4444 4677776553
No 82
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.66 E-value=0.00066 Score=59.25 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=56.9
Q ss_pred ceEEEEec-cHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGf-GnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
+||+|.|+ |++|+.+++.+.+ .+..++++.|++..- -.|-|+.++.... . .+....++.++++.. ||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~-~-------~~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIG-P-------LGVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSS-T--------SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcC-C-------cccccchhHHHhccc-CC
Confidence 48999999 9999999999988 899999999986521 1255655543322 0 122233334566665 99
Q ss_pred EEecccccccccccccccc---cceEEEec
Q psy8193 303 ILIPAAIEDQITINNANNV---TAKIILEG 329 (428)
Q Consensus 303 IliPaA~~~~It~~na~~l---~akiIveg 329 (428)
|+|.++...... +|+... +..+|++-
T Consensus 70 VvIDfT~p~~~~-~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 70 VVIDFTNPDAVY-DNLEYALKHGVPLVIGT 98 (124)
T ss_dssp EEEEES-HHHHH-HHHHHHHHHT-EEEEE-
T ss_pred EEEEcCChHHhH-HHHHHHHhCCCCEEEEC
Confidence 999999544332 222222 55666643
No 83
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.65 E-value=0.0051 Score=62.82 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH
Q psy8193 197 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276 (428)
Q Consensus 197 ~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~ 276 (428)
.+..--||.+.+-++..+ .+.-+.|++++|.|||-||+..|..|...|++|+ |++ +|+=..++..-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtE----------vDPI~AleA~M 250 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTE----------VDPIRALEAAM 250 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEe----------cCchHHHHHhh
Confidence 344556777766666544 3556799999999999999999999999999985 998 66644333321
Q ss_pred hcCCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEe
Q psy8193 277 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILE 328 (428)
Q Consensus 277 ~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIve 328 (428)
.+ .++++ .++.. ...||||-|+. .++|+.+.....+=..|+.
T Consensus 251 -----dG---f~V~~-m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~ 293 (420)
T COG0499 251 -----DG---FRVMT-MEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAILA 293 (420)
T ss_pred -----cC---cEEEE-hHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEEe
Confidence 22 34433 22222 35699999997 8999999888886555553
No 84
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.64 E-value=0.011 Score=59.45 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCcee
Q psy8193 210 IGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 289 (428)
Q Consensus 210 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~ 289 (428)
+++.+...++ ++.+++|+|+|+|.+|+.+++.|...|++.|.|+| .+.++..++.++.+. ..
T Consensus 165 Av~~a~~~~~-~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~----------r~~~ra~~la~~~g~-------~~ 226 (311)
T cd05213 165 AVELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIAN----------RTYERAEELAKELGG-------NA 226 (311)
T ss_pred HHHHHHHHhC-CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHHcCC-------eE
Confidence 3454444444 37899999999999999999999998876667888 466666666665442 12
Q ss_pred ccCCCcccc--cCceEEecccccccc---cccccccc--cceEEEecCCCC-CCHH
Q psy8193 290 INDSKEFWS--IPCDILIPAAIEDQI---TINNANNV--TAKIILEGANGP-TTTE 337 (428)
Q Consensus 290 i~~~~~il~--~~~DIliPaA~~~~I---t~~na~~l--~akiIvegAN~p-~t~e 337 (428)
++ .+++.+ .++||+|-|+..... -..-.... +-++|++-+|.+ +.|+
T Consensus 227 ~~-~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 227 VP-LDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred Ee-HHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 21 111211 368999999875443 11111111 235777777633 3443
No 85
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.60 E-value=0.036 Score=59.45 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=107.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh---cCCCcCCCCceeccCCCccccc--
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF---TRSIKDFNEGEKINDSKEFWSI-- 299 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~---~g~l~~~~~~~~i~~~~~il~~-- 299 (428)
.+|.++|+|++|+.+|+.|.+.|.+| .|.| .+.++..++.+. .|. ..+ ...++++++.+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V-~V~N----------Rt~~k~~~l~~~~~~~Ga-~~~---~~a~s~~e~v~~l~ 71 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPI-SVYN----------RTTSKVDETVERAKKEGN-LPL---YGFKDPEDFVLSIQ 71 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeE-EEEC----------CCHHHHHHHHHhhhhcCC-ccc---ccCCCHHHHHhcCC
Confidence 36999999999999999999999998 4777 456666665542 121 000 111223444432
Q ss_pred CceEEeccccccccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHHCCCceeccccc------------cccch
Q psy8193 300 PCDILIPAAIEDQITIN----NANNV-TAKIILEGANGP--TTTEADDILRDKGIILAPDVIT------------NAGGV 360 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~----na~~l-~akiIvegAN~p--~t~ea~~iL~~rGI~viPD~la------------NaGGV 360 (428)
.||+++-|-..+....+ -.+.+ .-++|+++.|.. .|.+..+.++++|+.++=-.+. -.||=
T Consensus 72 ~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~ 151 (493)
T PLN02350 72 KPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGS 151 (493)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCC
Confidence 48888877553332222 23334 467999999996 3667778899999988744443 11222
Q ss_pred hhhHHHHHh----hccc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q psy8193 361 IVSYFEWVQ----NLSN-------LLW--------TEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFII 414 (428)
Q Consensus 361 i~s~~E~~q----n~~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~~ 414 (428)
-. .||-++ .+.. ..| -..-|+.-++..+-..+.+.+..+++ .|+++.+.+.++
T Consensus 152 ~~-a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf 224 (493)
T PLN02350 152 FE-AYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVF 224 (493)
T ss_pred HH-HHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 11 122222 1110 111 12456666777777888889999988 599988877653
No 86
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.54 E-value=0.0062 Score=59.82 Aligned_cols=124 Identities=18% Similarity=0.102 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHC----CC------EEEEEEcCCCeeeCCCCCCHHHHH
Q psy8193 203 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA------KIVAIQDDKTTIYNPNGFNIPKLQ 272 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kvVaVsD~~G~i~n~~GlD~~~l~ 272 (428)
||-=+..++..+++..|.+|++.||++.|.|..|-.+|++|.+. |. +=+-+.|++|-|++.. -|+..-.
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~ 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHK 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhh
Confidence 55556778888899999999999999999999999999999886 87 4456999999999776 4443333
Q ss_pred HHHHhcCCCcCCCCceeccCCCc-ccccCceEEeccc-cccccccccccccc----ceEEEecCCC
Q psy8193 273 KYVTFTRSIKDFNEGEKINDSKE-FWSIPCDILIPAA-IEDQITINNANNVT----AKIILEGANG 332 (428)
Q Consensus 273 ~~~~~~g~l~~~~~~~~i~~~~~-il~~~~DIliPaA-~~~~It~~na~~l~----akiIvegAN~ 332 (428)
+...+... +...+.+ ..+ +-..+.||||=++ .++.+|++-+.... -.||---+|-
T Consensus 83 ~~~a~~~~----~~~~~~~-L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 83 KPFARKTN----PEKDWGS-LLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp HHHHBSSS----TTT--SS-HHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred hhhhccCc----ccccccC-HHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 33322110 0011111 223 3356779999999 79999999988884 3688888774
No 87
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.52 E-value=0.0063 Score=64.03 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=87.0
Q ss_pred CceEEEEeccHHHHHHHHHHHHC----------CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCC
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 293 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~----------GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~ 293 (428)
..+|+|.|+|+||+.+++.|.+. +.++++|+|++..-. .++ .+++..+.+|.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~----------------~~~~~~~~~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGV----------------DLPGILLTTDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCC----------------CCcccceeCCH
Confidence 46899999999999999988653 478999999642111 111 11122233335
Q ss_pred Ccccc-cCceEEeccccccccccccc-ccccc-eEEEecCCCCC-C---HHHHHHHHHCCCceecccccccc-ch--hhh
Q psy8193 294 KEFWS-IPCDILIPAAIEDQITINNA-NNVTA-KIILEGANGPT-T---TEADDILRDKGIILAPDVITNAG-GV--IVS 363 (428)
Q Consensus 294 ~~il~-~~~DIliPaA~~~~It~~na-~~l~a-kiIvegAN~p~-t---~ea~~iL~~rGI~viPD~laNaG-GV--i~s 363 (428)
++++. .+.||++.|+.+.....+.+ .-+++ |-|+ -+|-+. . ++..++.+++|+.+. |-+..| |+ +..
T Consensus 65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVV-taNK~~~a~~~~eL~~lA~~~gv~l~--fEasV~ggiPii~~ 141 (426)
T PRK06349 65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVV-TANKALLAVHGAELFAAAEEKGVDLY--FEAAVAGGIPIIKA 141 (426)
T ss_pred HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEE-EcCHHHHHHHHHHHHHHHHHcCCcEE--EEEEeeccCchHHH
Confidence 66764 57999999975543333333 22222 3333 224333 2 233455667898765 333333 32 222
Q ss_pred HHHHHhh--cccC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy8193 364 YFEWVQN--LSNL----LWTEQEINLRLNNIICNAFDAIWELANTKKV 405 (428)
Q Consensus 364 ~~E~~qn--~~~~----~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 405 (428)
.-+.+.. +... .=+-.-+..++.+. ...|.+++..|++.|.
T Consensus 142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy 188 (426)
T PRK06349 142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY 188 (426)
T ss_pred HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 2222211 0000 00234455555422 3479999999999775
No 88
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.48 E-value=0.028 Score=57.13 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=69.7
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHH-HCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 297 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il 297 (428)
|.+|.|+|+.|+|+|++|+.+|+.+. ..|.+|+ ..|... +.+.. ... +.+..+ .++++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~~~~--------~~~~~----~~~-------~~~~~~-l~ell 198 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNARRH--------HKEAE----ERF-------NARYCD-LDTLL 198 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EECCCC--------chhhH----Hhc-------CcEecC-HHHHH
Confidence 45789999999999999999999997 8999986 444321 11110 111 122223 45555
Q ss_pred ccCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 298 SIPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 298 ~~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
..|||++-+.. .+.|+.+...+++ -.+++.-|-+++ ..+| .+.|++.-|
T Consensus 199 -~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 199 -QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred -HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 47898887665 3456666555553 458888888886 4444 477776655
No 89
>PLN00203 glutamyl-tRNA reductase
Probab=96.47 E-value=0.12 Score=55.99 Aligned_cols=114 Identities=7% Similarity=0.078 Sum_probs=74.3
Q ss_pred HHHHHHHHhCC-CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCce
Q psy8193 210 IGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE 288 (428)
Q Consensus 210 ~~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~ 288 (428)
+++.+.+.++. ++.+++|+|+|.|.+|+.+++.|...|++-|.|++ -+.+...++.++.+.. ...
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n----------Rs~era~~La~~~~g~----~i~ 316 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN----------RSEERVAALREEFPDV----EII 316 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe----------CCHHHHHHHHHHhCCC----ceE
Confidence 44444555664 58999999999999999999999999975445777 3456666665543211 011
Q ss_pred eccCCCccc--ccCceEEeccc--cccccccccccccc--------ceEEEecCCCC-CCHHH
Q psy8193 289 KINDSKEFW--SIPCDILIPAA--IEDQITINNANNVT--------AKIILEGANGP-TTTEA 338 (428)
Q Consensus 289 ~i~~~~~il--~~~~DIliPaA--~~~~It~~na~~l~--------akiIvegAN~p-~t~ea 338 (428)
..+ .+++. -.++||+|-|+ ...+|+.+.+..+. -+++++-|.-. +.|+.
T Consensus 317 ~~~-~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v 378 (519)
T PLN00203 317 YKP-LDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV 378 (519)
T ss_pred eec-HhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence 111 12221 24899999987 46678887776652 24888888765 45543
No 90
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.46 E-value=0.033 Score=55.04 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 201 KATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 201 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.-|+|-.+..+.+.++++|.+|+..+|+|.|. |.+|+.+||.|.-++.++.-+-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~ 198 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLL 198 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEec
Confidence 46899988889999999999999999999999 9999999999999887776444
No 91
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.42 E-value=0.076 Score=57.48 Aligned_cols=181 Identities=15% Similarity=0.093 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHH
Q psy8193 129 LSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVF 208 (428)
Q Consensus 129 ~s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~ 208 (428)
.+..|-+.+...|++++.... |...|==+|++..- ---+.+.|+.- ..++ .+-..-||-=+.
T Consensus 220 ~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~-----i~~F----------nDDiQGTaaV~l 281 (559)
T PTZ00317 220 LDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNK-----YRCF----------NDDIQGTGAVIA 281 (559)
T ss_pred CChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccC-----CCEe----------cccchhHHHHHH
Confidence 366788889999999998766 55666677887642 23466777642 1122 133456787788
Q ss_pred HHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHH----CCC------EEEEEEcCCCeeeCCCC--CCHHHHHHHHH
Q psy8193 209 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA------KIVAIQDDKTTIYNPNG--FNIPKLQKYVT 276 (428)
Q Consensus 209 ~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga------kvVaVsD~~G~i~n~~G--lD~~~l~~~~~ 276 (428)
.++..+++..|.++++.||++.|.|..|.++|++|.+ .|. +=+-+.|++|-|+...+ ++..+ +...
T Consensus 282 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k--~~fa 359 (559)
T PTZ00317 282 AGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK--VPFA 359 (559)
T ss_pred HHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH--HHHh
Confidence 8889999999999999999999999999999999874 687 33468999999998764 33222 2222
Q ss_pred hcCCCcCCCCceeccCCCcc-cccCceEEecccc-ccccccccccccc----ceEEEecCCC
Q psy8193 277 FTRSIKDFNEGEKINDSKEF-WSIPCDILIPAAI-EDQITINNANNVT----AKIILEGANG 332 (428)
Q Consensus 277 ~~g~l~~~~~~~~i~~~~~i-l~~~~DIliPaA~-~~~It~~na~~l~----akiIvegAN~ 332 (428)
+... .-++....+ ..+. -..+.||||=++. ++.+|++-+.... =.||---+|-
T Consensus 360 ~~~~--~~~~~~~~~-L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 360 RTDI--SAEDSSLKT-LEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP 418 (559)
T ss_pred cccc--ccccccCCC-HHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 1100 000000111 2233 3567899999996 7999999877763 3677777774
No 92
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.40 E-value=0.0036 Score=55.24 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=45.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
.-.||.|+|.|+||.++++.|.+.|..|++|... +.....+..+.. +.....+ .++++ .++|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr----------s~~sa~~a~~~~------~~~~~~~-~~~~~-~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSR----------SPASAERAAAFI------GAGAILD-LEEIL-RDAD 70 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSC----------HH-HHHHHHC--------TT------TTGGG-CC-S
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC----------Cccccccccccc------ccccccc-ccccc-ccCC
Confidence 4578999999999999999999999999988763 222333322221 1222223 45555 4899
Q ss_pred EEeccccccccc
Q psy8193 303 ILIPAAIEDQIT 314 (428)
Q Consensus 303 IliPaA~~~~It 314 (428)
+++-|...+.|.
T Consensus 71 lv~iavpDdaI~ 82 (127)
T PF10727_consen 71 LVFIAVPDDAIA 82 (127)
T ss_dssp EEEE-S-CCHHH
T ss_pred EEEEEechHHHH
Confidence 999998877774
No 93
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.38 E-value=0.12 Score=51.54 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=95.0
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEe
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 305 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIli 305 (428)
+|.++|.|++|+.+++.|.+.|..|+ |.|. +.. ..++.+ .| ....+++.+.. .+||+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~----------~~~-~~~~~~-~g-------~~~~~s~~~~~-~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTI----------GPV-ADELLS-LG-------AVSVETARQVT-EASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeC----------CHh-HHHHHH-cC-------CeecCCHHHHH-hcCCEEE
Confidence 68999999999999999999999875 6663 222 222222 22 22222233333 4889999
Q ss_pred cccccc-----cccccc--cccc-cceEEEecCCCC--CCHHHHHHHHHCCCceeccccccccchhhh------------
Q psy8193 306 PAAIED-----QITINN--ANNV-TAKIILEGANGP--TTTEADDILRDKGIILAPDVITNAGGVIVS------------ 363 (428)
Q Consensus 306 PaA~~~-----~It~~n--a~~l-~akiIvegAN~p--~t~ea~~iL~~rGI~viPD~laNaGGVi~s------------ 363 (428)
-|-... ++..++ +..+ .-++|++-.... .+.+..+.+.++|+.++--.+. ||....
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVs--Gg~~~a~~g~l~~~~gG~ 138 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVS--GGEIGAREGTLSIMVGGD 138 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCC--CCHHHHhcCcEEEEEcCC
Confidence 876533 222211 2222 346777765544 2456678899999988865543 554311
Q ss_pred --HHHHHhh----ccc-CCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8193 364 --YFEWVQN----LSN-LLW-T-------EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFII 414 (428)
Q Consensus 364 --~~E~~qn----~~~-~~w-~-------~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 414 (428)
.++.++. +.. ..| . .+-++.-+-......+.+.+..+++.|+++.+...++
T Consensus 139 ~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 139 EAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred HHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1121111 000 000 0 1122333433334567788889999999998877655
No 94
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.38 E-value=0.053 Score=58.68 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHH------hCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH
Q psy8193 203 TGRGVFIIGSKIASK------INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276 (428)
Q Consensus 203 Tg~Gv~~~~~~~~~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~ 276 (428)
-++|+..+++..+.. .+.++++++++|.|.|.+|+.++..|.+.|++|+ |.++ +.++..+..+
T Consensus 352 D~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR----------~~e~a~~la~ 420 (529)
T PLN02520 352 DYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANR----------TYERAKELAD 420 (529)
T ss_pred cHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHH
Confidence 378998888764422 2457889999999999999999999999999875 7774 4555555544
Q ss_pred hcCCCcCCCCceeccCCCcccccCceEEecccccccccccc---c--ccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 277 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINN---A--NNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 277 ~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~n---a--~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
+.+. ....+++..+.+..++||+|.|+.-+.-...+ . ..+ ...+|.+-.-+|....--+.-+++|..++
T Consensus 421 ~l~~-----~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 495 (529)
T PLN02520 421 AVGG-----QALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAIIV 495 (529)
T ss_pred HhCC-----ceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCCeEe
Confidence 3210 01111111222334689999887644422111 1 112 34688999888863333344466777654
No 95
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.37 E-value=0.088 Score=52.17 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=94.1
Q ss_pred EEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEeccc
Q psy8193 229 IQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 308 (428)
Q Consensus 229 IqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA 308 (428)
++|+|++|..+|+.|.+.|.+|+ +.| .+.+++.+..+. | ....+++.+.. .+||+++-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFD----------LFPDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence 47999999999999999999874 667 345555555432 2 22222133333 4789998887
Q ss_pred ccccccc-------cccccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccc-------------cccchhhhHH
Q psy8193 309 IEDQITI-------NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT-------------NAGGVIVSYF 365 (428)
Q Consensus 309 ~~~~It~-------~na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~la-------------NaGGVi~s~~ 365 (428)
....... .-.+.+ +-++|+....... +.+..+.+.++|+.|+--.+. -.||--.. +
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~-~ 139 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEE-F 139 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHH-H
Confidence 6433221 122233 2357777665442 345567888899998864433 12332222 2
Q ss_pred HHH----hhccc-CCC----CHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8193 366 EWV----QNLSN-LLW----TEQE----INLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 415 (428)
Q Consensus 366 E~~----qn~~~-~~w----~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a 415 (428)
+.+ +.+.. ..+ ...+ ++.-+.......+.+.+..+++.|+++.+...++.
T Consensus 140 ~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 140 AAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 222 21111 111 1112 22233333334678888999999999988765544
No 96
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.34 E-value=0.029 Score=57.08 Aligned_cols=93 Identities=16% Similarity=0.315 Sum_probs=56.9
Q ss_pred eEEEEeccHHHHHHHHHHHHCC----CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCc-CCCC------------ce
Q psy8193 226 KISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK-DFNE------------GE 288 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~-~~~~------------~~ 288 (428)
||+|.|||.+|+.+++.|.+.+ ..|++|.| +...+.+.|..++.+.- .|++ ++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd----------~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~ 70 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE----------LADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGD 70 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec----------CCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCe
Confidence 5899999999999999998764 89999998 33344445555544432 1210 11
Q ss_pred e---c--cCCCc-cc-ccCceEEecccccccccccccccc---cceEEEec
Q psy8193 289 K---I--NDSKE-FW-SIPCDILIPAAIEDQITINNANNV---TAKIILEG 329 (428)
Q Consensus 289 ~---i--~~~~~-il-~~~~DIliPaA~~~~It~~na~~l---~akiIveg 329 (428)
. . .++++ -| +.++|+++.|+... .+.+.+... .|+.|.-.
T Consensus 71 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 71 CIRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred EEEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEec
Confidence 1 1 01322 22 46899999999644 555555443 44444443
No 97
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.28 E-value=0.056 Score=53.74 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC
Q psy8193 204 GRGVFIIGSKIASKINL--NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l 281 (428)
+.|...+++. .+. ++++++|+|.|.|.+++.++..|.+.|++-|.|.++ +.++..++.++.+..
T Consensus 107 ~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------t~~ka~~La~~~~~~ 172 (282)
T TIGR01809 107 WDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------NPDKLSRLVDLGVQV 172 (282)
T ss_pred HHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhhhc
Confidence 7787777753 342 578999999999999999999999999865568874 345555554432211
Q ss_pred cCCCCceeccCCCccc--ccCceEEeccccc-ccccccccc---------cc-cceEEEecCCCCCCHHHHHHHHHCCCc
Q psy8193 282 KDFNEGEKINDSKEFW--SIPCDILIPAAIE-DQITINNAN---------NV-TAKIILEGANGPTTTEADDILRDKGII 348 (428)
Q Consensus 282 ~~~~~~~~i~~~~~il--~~~~DIliPaA~~-~~It~~na~---------~l-~akiIvegAN~p~t~ea~~iL~~rGI~ 348 (428)
. ....++..+++. -.++||+|-|+.- ..++.+... ++ +..++.+...+|....--+.-+++|..
T Consensus 173 ~---~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~ 249 (282)
T TIGR01809 173 G---VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVSAAGWR 249 (282)
T ss_pred C---cceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHHHCCCE
Confidence 0 111121011211 1478999999863 334433221 11 245788888888533333445667876
Q ss_pred ee
Q psy8193 349 LA 350 (428)
Q Consensus 349 vi 350 (428)
++
T Consensus 250 ~~ 251 (282)
T TIGR01809 250 VI 251 (282)
T ss_pred EE
Confidence 64
No 98
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.28 E-value=0.013 Score=62.47 Aligned_cols=172 Identities=15% Similarity=0.131 Sum_probs=105.0
Q ss_pred EEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc--cCceEE
Q psy8193 227 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCDIL 304 (428)
Q Consensus 227 vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~--~~~DIl 304 (428)
|.|+|+|++|+++|+.|.+.|.+|+ |.| .+.+++.++.++...-.+ ....++.+++.. .+||++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~d----------rt~~~~~~l~~~~~~g~~---~~~~~s~~e~v~~l~~~dvI 67 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYN----------RTPEKTDEFLAEHAKGKK---IVGAYSIEEFVQSLERPRKI 67 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEe----------CCHHHHHHHHhhccCCCC---ceecCCHHHHHhhcCCCCEE
Confidence 7899999999999999999999874 667 566777666654211000 111121333332 258877
Q ss_pred ecccccccccccc----cccc-cceEEEecCCCC-C-CHHHHHHHHHCCCceeccccccccchhh-------------hH
Q psy8193 305 IPAAIEDQITINN----ANNV-TAKIILEGANGP-T-TTEADDILRDKGIILAPDVITNAGGVIV-------------SY 364 (428)
Q Consensus 305 iPaA~~~~It~~n----a~~l-~akiIvegAN~p-~-t~ea~~iL~~rGI~viPD~laNaGGVi~-------------s~ 364 (428)
+-|...+....+. ++.+ .-++|+++.|.- . |.+..+.|+++||.++--.+. ||.-. ..
T Consensus 68 il~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVs--GG~~gA~~G~~im~GG~~~a 145 (467)
T TIGR00873 68 MLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVS--GGEEGARKGPSIMPGGSAEA 145 (467)
T ss_pred EEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCC--CCHHHHhcCCcCCCCCCHHH
Confidence 7776553333333 2333 347999999954 3 556667799999999765554 55531 11
Q ss_pred HHHHhh----ccc-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q psy8193 365 FEWVQN----LSN-------LLW--------TEQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 414 (428)
Q Consensus 365 ~E~~qn----~~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 414 (428)
||.++. +.. ..| ...-|+..++..+-.++.+.+...+ +.++++.+.+.++
T Consensus 146 ~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 146 WPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 222221 110 011 1234666677777788888888775 6888887766555
No 99
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.22 E-value=0.015 Score=58.49 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=66.0
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. .+.|.. ....+ .++++ .+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~-~~r~~---~~~~~~-------------------~~~~~-l~ell-~~ 173 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYA-YTRSY---VNDGIS-------------------SIYME-PEDIM-KK 173 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCCC---cccCcc-------------------cccCC-HHHHH-hh
Confidence 68999999999999999999999999999974 45431 111110 00112 44555 47
Q ss_pred ceEEeccccc-----ccccccccccc-cceEEEecCCCCC-CHH-HHHHHHHCCC
Q psy8193 301 CDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTE-ADDILRDKGI 347 (428)
Q Consensus 301 ~DIliPaA~~-----~~It~~na~~l-~akiIvegAN~p~-t~e-a~~iL~~rGI 347 (428)
||+++-|... +.|+.+....+ +-.+++.-+=+++ ..+ ..+.|+++-+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 8999887763 44555555555 2357777777775 443 3577777634
No 100
>PRK12862 malic enzyme; Reviewed
Probab=96.22 E-value=0.034 Score=62.59 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=92.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCC---EEEEEEcCCCeeeCCC--CCCHHHHH
Q psy8193 198 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKLQ 272 (428)
Q Consensus 198 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~n~~--GlD~~~l~ 272 (428)
+-..-||-=+..++..+++..|.++++.||++.|.|..|..+|++|...|. +| -++|++|.|+... +++..+..
T Consensus 167 DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i-~~~D~~G~i~~~r~~~l~~~~~~ 245 (763)
T PRK12862 167 DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENI-WVTDIKGVVYEGRTELMDPWKAR 245 (763)
T ss_pred cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccE-EEEcCCCeeeCCCCccccHHHHH
Confidence 345678888888999999999999999999999999999999999999998 45 6999999999765 35543322
Q ss_pred HHHHhcCCCcCCCCceeccCCCcccccCceEEeccccccccccccccccc-ceEEEecCCC
Q psy8193 273 KYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANG 332 (428)
Q Consensus 273 ~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l~-akiIvegAN~ 332 (428)
+.+.+ +. -+ ..+.+.. +||||=++.++.+|++-+.... =.||---||-
T Consensus 246 -~a~~~----~~-----~~-l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 294 (763)
T PRK12862 246 -YAQKT----DA-----RT-LAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANP 294 (763)
T ss_pred -Hhhhc----cc-----CC-HHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCC
Confidence 22221 10 11 3445544 8999999999999999888873 3566667763
No 101
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.025 Score=57.29 Aligned_cols=96 Identities=22% Similarity=0.333 Sum_probs=60.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCC--CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCc---------------
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG--------------- 287 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~G--akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~--------------- 287 (428)
.||+|-|||-+|+.+++.+.+.+ ..||+|.|. .|++.+..+.+..+....|++.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 58999999999999999999875 899999994 2444443333222212233211
Q ss_pred eecc--CCCcc--cccCceEEeccccccccccccccc-c---cceEEEecC
Q psy8193 288 EKIN--DSKEF--WSIPCDILIPAAIEDQITINNANN-V---TAKIILEGA 330 (428)
Q Consensus 288 ~~i~--~~~~i--l~~~~DIliPaA~~~~It~~na~~-l---~akiIvegA 330 (428)
+... +++.| -+...||+++|+.... +.+|+.+ + .||-|.-+|
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isa 122 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISA 122 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcC
Confidence 0111 12222 2456899999997666 8888885 4 255555444
No 102
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.11 E-value=0.068 Score=57.80 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
|.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+ .+.+.. ... +.+..+ .++++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~~--------~~~~~~----~~~-------g~~~~~-l~ell~ 193 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVI-AYDPY--------ISPERA----AQL-------GVELVS-LDELLA 193 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECCC--------CChhHH----Hhc-------CCEEEc-HHHHHh
Confidence 446899999999999999999999999999996 44432 121111 111 123333 455553
Q ss_pred cCceEEeccccc-----ccccccccccc-cceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 299 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 299 ~~~DIliPaA~~-----~~It~~na~~l-~akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
.||+++-|... +.|+.+....+ +-.+++.-+-+++ ..+| .+.|++.-|
T Consensus 194 -~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 194 -RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred -hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 78988877653 45555555555 2357777777775 4444 467777655
No 103
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.06 E-value=0.031 Score=47.29 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=70.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHC--CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc-cCc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 301 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~-~~~ 301 (428)
.||+|+|+|+.|+.....+.+. +.++++|+| .+.+...+..++.+ ...++|.+++++ .++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d----------~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD----------PDPERAEAFAEKYG-------IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC----------SSHHHHHHHHHHTT-------SEEESSHHHHHHHTTE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe----------CCHHHHHHHHHHhc-------ccchhHHHHHHHhhcC
Confidence 4799999999999988777665 689999999 67777777766543 224443566775 579
Q ss_pred eEEecccccccccccccccc---cceEEEecCCCCCCHHHHH---HHHHCCCce
Q psy8193 302 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADD---ILRDKGIIL 349 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l---~akiIvegAN~p~t~ea~~---iL~~rGI~v 349 (428)
|+++-|+.... +.+.+... +..+++|=.=.....++.+ ..+++|+.+
T Consensus 64 D~V~I~tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 64 DAVIIATPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp SEEEEESSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred CEEEEecCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 99999886432 33333332 4578888533333344443 346666654
No 104
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.033 Score=55.58 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+.|-+|+...++ +.+.+++|++|+|.|.|+ ||+.++.+|.+.|+.| .|+++
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatV-tv~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANATV-TICHS 191 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEE-EEEeC
Confidence 4678777776655 578899999999999998 9999999999999965 68874
No 105
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.04 E-value=0.038 Score=55.95 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.++.|+||.|.|+|++|+.+|+.|...|.+|++. |..+ .+++. +..+ .++++ .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~~---------------------~~~~-l~ell-~ 196 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPARP---------------------DRLP-LDELL-P 196 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Ccccc---------------------cccC-HHHHH-H
Confidence 3689999999999999999999999999999754 4321 11110 0112 33444 3
Q ss_pred CceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 300 PCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 300 ~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
.|||++-+.. .+.|+.+...+++ --+++.-|=+++ ..+| .+.|++.-|
T Consensus 197 ~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 197 QVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred hCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 6788876654 4556666666663 457788888886 4444 467776554
No 106
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.00 E-value=0.079 Score=53.94 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=71.7
Q ss_pred hCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc
Q psy8193 218 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 297 (428)
Q Consensus 218 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il 297 (428)
+|.++.|+|+.|.|+|.+|+.+|+.+.-.|.+|+ ..|. ... . +.. +.. +.+.++ .++++
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~-------~~~-~-~~~----~~~------~~~y~~-l~ell 198 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDR-------SPN-P-EAE----KEL------GARYVD-LDELL 198 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECC-------CCC-h-HHH----hhc------Cceecc-HHHHH
Confidence 3567999999999999999999999999999985 4443 222 1 111 111 133344 44555
Q ss_pred ccCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHHCCCc
Q psy8193 298 SIPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 348 (428)
Q Consensus 298 ~~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t-~ea~~iL~~rGI~ 348 (428)
..+||++-... .+.||.+...+++ --+++.-|=+++ . +...+.|+++-|.
T Consensus 199 -~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 199 -AESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred -HhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 47788876554 3455555555553 368888888886 3 4446788887554
No 107
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.98 E-value=0.11 Score=52.42 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
...++|.|+|.|..|+..++.+.. .+.+-|.|.+ -+.++..++.++.... +. .....++.++.+ .+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~----------Rs~~~a~~~a~~~~~~-g~-~~~~~~~~~~av-~~ 189 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWG----------RDPAKAEALAAELRAQ-GF-DAEVVTDLEAAV-RQ 189 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc----------CCHHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-hc
Confidence 367899999999999999986665 5544445777 4566666665542211 11 122233233333 48
Q ss_pred ceEEeccccc--ccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceecc
Q psy8193 301 CDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPD 352 (428)
Q Consensus 301 ~DIliPaA~~--~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD 352 (428)
|||++-|+.. .+++.+.+.. .+-+.+-|++.|...|.+..+.+|+..|+=|
T Consensus 190 aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 190 ADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 9999887753 2344443322 3457778888888888877777788666533
No 108
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.98 E-value=0.039 Score=57.09 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=57.1
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCC---cccc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK---EFWS 298 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~---~il~ 298 (428)
+.+.+|+|+|+|.+|+.+++.+...|++| .+.| .+.+++.++....+.... ....+.+ +.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V-~v~d----------~~~~~~~~l~~~~g~~v~----~~~~~~~~l~~~l- 228 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATV-TILD----------INIDRLRQLDAEFGGRIH----TRYSNAYEIEDAV- 228 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeE-EEEE----------CCHHHHHHHHHhcCceeE----eccCCHHHHHHHH-
Confidence 56788999999999999999999999986 4777 455665555444332100 0011011 222
Q ss_pred cCceEEecccc------ccccccccccccc-ceEEEe
Q psy8193 299 IPCDILIPAAI------EDQITINNANNVT-AKIILE 328 (428)
Q Consensus 299 ~~~DIliPaA~------~~~It~~na~~l~-akiIve 328 (428)
.++||+|-|+. ...|+.+-...++ -.+|+.
T Consensus 229 ~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 229 KRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred ccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 37899998862 2346666665553 235555
No 109
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.95 E-value=0.074 Score=54.19 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.++.|++|.|+|+|++|+.+|+.|...|.+|++ .|.+ .+..... .+..++.++++ .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~-~d~~----------~~~~~~~------------~~~~~~l~ell-~ 197 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITA-YDAY----------PNKDLDF------------LTYKDSVKEAI-K 197 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-EeCC----------hhHhhhh------------hhccCCHHHHH-h
Confidence 368999999999999999999999999999974 4532 1111110 00111123343 4
Q ss_pred CceEEecccccc-----ccccccccccc-ceEEEecCCCCC-CHH-HHHHHHHCCC
Q psy8193 300 PCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGI 347 (428)
Q Consensus 300 ~~DIliPaA~~~-----~It~~na~~l~-akiIvegAN~p~-t~e-a~~iL~~rGI 347 (428)
+||+++-|...+ .++.+....++ -.+++..+=+++ ..+ ..+.|++.-|
T Consensus 198 ~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 198 DADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred cCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCe
Confidence 789988887643 45555555552 458899999996 443 3577876655
No 110
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.95 E-value=0.093 Score=55.04 Aligned_cols=105 Identities=14% Similarity=0.277 Sum_probs=67.6
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
+.+|.|+||.|+|+|++|+.+|+.+...|.+|++ .|.+.. ...+ +.+...+.++++
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~-~d~~~~----------------~~~~------~~~~~~~l~ell- 201 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF-YDIEDK----------------LPLG------NARQVGSLEELL- 201 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECCCcc----------------cccC------CceecCCHHHHH-
Confidence 3468999999999999999999999999999974 443210 0000 112221144555
Q ss_pred cCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 299 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 299 ~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
..||+++-+.. .+.|+.+....++ -.+++.-|=+++ ..+| .+.|+++-|
T Consensus 202 ~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 202 AQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred hhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc
Confidence 36788877654 2356666666653 457777777775 4444 467776655
No 111
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.87 E-value=0.021 Score=61.43 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCC----------CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH
Q psy8193 208 FIIGSKIASKINL----------NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276 (428)
Q Consensus 208 ~~~~~~~~~~~g~----------~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~ 276 (428)
+.++.++.++++. ...+.+|+|.|.|.+|..++..+...|++| -+.| .+.+++...++
T Consensus 139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V-~a~D----------~~~~rle~aes 206 (509)
T PRK09424 139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIV-RAFD----------TRPEVAEQVES 206 (509)
T ss_pred HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEE-EEEe----------CCHHHHHHHHH
Confidence 4555666555543 235899999999999999999999999975 5788 66666665544
No 112
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.86 E-value=0.34 Score=50.86 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=27.5
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.||..+|..|.+.|..|+ +.|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~-~~D 33 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVI-GVD 33 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEE-EEe
Confidence 689999999999999999999999986 556
No 113
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.86 E-value=0.02 Score=58.44 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=55.8
Q ss_pred EEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC--CCcCCCC-------c--eeccCCC
Q psy8193 227 ISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR--SIKDFNE-------G--EKINDSK 294 (428)
Q Consensus 227 vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g--~l~~~~~-------~--~~i~~~~ 294 (428)
|+|.|||.+|+.+++.+.+ .+.++|+|+| .|++....+....+ +...++. . ....+.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD----------~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e 70 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK----------TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE 70 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec----------CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence 5899999999999998765 5789999999 45654433333222 1111111 0 1111244
Q ss_pred cccccCceEEecccccccccccccccc---cceEEEec
Q psy8193 295 EFWSIPCDILIPAAIEDQITINNANNV---TAKIILEG 329 (428)
Q Consensus 295 ~il~~~~DIliPaA~~~~It~~na~~l---~akiIveg 329 (428)
+++ .+||++++|+ +...+..|+..+ ++|.|.-+
T Consensus 71 eLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~ 106 (333)
T TIGR01546 71 DLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQG 106 (333)
T ss_pred HHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEEC
Confidence 565 4799999998 555556666554 44444433
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.85 E-value=0.064 Score=52.19 Aligned_cols=171 Identities=12% Similarity=0.118 Sum_probs=87.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEE--EEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKI--VAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Gakv--VaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
++|.|+|+|++|+.+++.|.+.|..+ +.|+|+ +.+...++.++.+ +.+..+++.++. .+||
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r----------~~~~~~~l~~~~~------~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR----------NAQIAARLAERFP------KVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECC----------CHHHHHHHHHHcC------CceEeCCHHHHH-HhCC
Confidence 37999999999999999999887533 345552 4555555544331 223333244443 4689
Q ss_pred EEecccccccccccccccc---cceEEEecCCCCCCHHH-HHHHHH--CCCceeccccc-cccchhhh--HHHHHhh---
Q psy8193 303 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEA-DDILRD--KGIILAPDVIT-NAGGVIVS--YFEWVQN--- 370 (428)
Q Consensus 303 IliPaA~~~~It~~na~~l---~akiIvegAN~p~t~ea-~~iL~~--rGI~viPD~la-NaGGVi~s--~~E~~qn--- 370 (428)
|++-|.....+. +-+..+ +-++|+.-+ .+++.+. .+.+.. +-+.++|-.-. ...|++.- ..++++.
T Consensus 64 vVilav~p~~~~-~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~ 141 (258)
T PRK06476 64 VVFLAVRPQIAE-EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFD 141 (258)
T ss_pred EEEEEeCHHHHH-HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHH
Confidence 999888754332 211112 235666644 4555443 344432 22344453221 22343221 1123222
Q ss_pred -cccCCC--CHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8193 371 -LSNLLW--TEQEINL------RLNNIICNAFDAIWELANTKKVSLRTAAFIIG 415 (428)
Q Consensus 371 -~~~~~w--~~e~v~~------~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a 415 (428)
+....| +++..+. -.-..+ ..+....+.+++.|++..+|..++.
T Consensus 142 ~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 142 ALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred hcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222222 1222211 122222 3556666777888998887765543
No 115
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=95.85 E-value=0.24 Score=50.18 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.4
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
|++++|.|+|+|++|+.+|+.|.+.|.+|+...+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence 5789999999999999999999999988753344
No 116
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.84 E-value=0.12 Score=53.71 Aligned_cols=180 Identities=18% Similarity=0.153 Sum_probs=98.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC-----C---CCceeccCC-Cc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F---NEGEKINDS-KE 295 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~-----~---~~~~~i~~~-~~ 295 (428)
++|+|+|.|.||..+|..|.. |..|+ +.| +|.+++.+..+..-.+.. + ...+...+. ..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~Vi-gvD----------~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVV-ALD----------ILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEE-EEE----------CCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 379999999999999987774 98876 777 677776665542111000 0 011111101 11
Q ss_pred ccccCceEEeccccccccccc-------c-------cccc-cceEEE-ecCCCC-CCHHHHHHHHHCCCceecccccccc
Q psy8193 296 FWSIPCDILIPAAIEDQITIN-------N-------ANNV-TAKIIL-EGANGP-TTTEADDILRDKGIILAPDVITNAG 358 (428)
Q Consensus 296 il~~~~DIliPaA~~~~It~~-------n-------a~~l-~akiIv-egAN~p-~t~ea~~iL~~rGI~viPD~laNaG 358 (428)
-...+||+++.|..+.. +.+ . +.++ +-++|+ +..=.| +|.+..+.+.++|+.+-|.++...=
T Consensus 69 ~~~~~ad~vii~Vpt~~-~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~ 147 (388)
T PRK15057 69 EAYRDADYVIIATPTDY-DPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGK 147 (388)
T ss_pred hhhcCCCEEEEeCCCCC-ccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCc
Confidence 12368999999877552 211 1 0111 123444 555545 4566667788889999999875332
Q ss_pred -------------chhhhHH----HHHhh--cc-cCC-----CCHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q psy8193 359 -------------GVIVSYF----EWVQN--LS-NLL-----WTEQEI----NLRLNNIICNAFDAIWELANTKKVSLRT 409 (428)
Q Consensus 359 -------------GVi~s~~----E~~qn--~~-~~~-----w~~e~v----~~~l~~~m~~~~~~v~~~a~~~~~~~r~ 409 (428)
|.....+ +.+.. .. ... +...|. ..-+........+++...|++.|++..+
T Consensus 148 a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~e 227 (388)
T PRK15057 148 ALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQ 227 (388)
T ss_pred ccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 2211111 11110 00 011 111122 2222333345678888999999999998
Q ss_pred HHHHHHHH
Q psy8193 410 AAFIIGCT 417 (428)
Q Consensus 410 aA~~~a~~ 417 (428)
....++.+
T Consensus 228 V~~a~~~d 235 (388)
T PRK15057 228 IIEGVCLD 235 (388)
T ss_pred HHHHhcCC
Confidence 88766543
No 117
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.81 E-value=0.018 Score=56.96 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=58.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHC---CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
.+||.|+|||++|+.+++.|... +..+++|.|+ +.++..+.... ...+++.++++..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~----------~~~~~~~~~~~---------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN----------AADLPPALAGR---------VALLDGLPGLLAWR 62 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC----------CHHHHHHhhcc---------CcccCCHHHHhhcC
Confidence 36899999999999999998653 3788888884 23333332211 22344466778889
Q ss_pred ceEEecccccccccccccccc--cceEEEec
Q psy8193 301 CDILIPAAIEDQITINNANNV--TAKIILEG 329 (428)
Q Consensus 301 ~DIliPaA~~~~It~~na~~l--~akiIveg 329 (428)
+|++++||....+.+--..-| .+.+|+-.
T Consensus 63 ~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 63 PDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999998777754433333 34555544
No 118
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.74 E-value=0.037 Score=55.94 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
++.|+||.|+|+|++|+.+|+.|...|.+|+++ |.+..- ..|+ ..+. ...+.++++ .+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~-~~~~~~--~~~~---------------~~~~---~~~~l~e~l-~~ 190 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRKS--WPGV---------------QSFA---GREELSAFL-SQ 190 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCCC--CCCc---------------eeec---ccccHHHHH-hc
Confidence 578999999999999999999999999999754 432100 0011 0000 001022333 37
Q ss_pred ceEEeccccc-----cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCCc
Q psy8193 301 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII 348 (428)
Q Consensus 301 ~DIliPaA~~-----~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI~ 348 (428)
|||++-|... +.|+.+...+++ -.+++.-+-+++ ..+| .+.|++.-|.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 8888887763 334444444443 358888888886 4443 4677776553
No 119
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.72 E-value=0.086 Score=57.92 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=83.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc----ccC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIP 300 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il----~~~ 300 (428)
.+|+|.|||.+|+.+++.|.+.|..++ +.| .|++.+.+..+. |.-.-|-++ + ..++| -.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID----------~d~~~v~~~~~~-g~~v~~GDa---t-~~~~L~~agi~~ 464 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLE----------RDISAVNLMRKY-GYKVYYGDA---T-QLELLRAAGAEK 464 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEE----------CCHHHHHHHHhC-CCeEEEeeC---C-CHHHHHhcCCcc
Confidence 579999999999999999999999986 777 577877766543 211111111 1 22333 247
Q ss_pred ceEEeccccccccccc---ccccc--cceEEEecCCCCCCHHHHHHHHHCCCc-eeccccccccchhhhHHHHHhhcccC
Q psy8193 301 CDILIPAAIEDQITIN---NANNV--TAKIILEGANGPTTTEADDILRDKGII-LAPDVITNAGGVIVSYFEWVQNLSNL 374 (428)
Q Consensus 301 ~DIliPaA~~~~It~~---na~~l--~akiIvegAN~p~t~ea~~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn~~~~ 374 (428)
||.+|-|.-....|.. .+.+. +.++|+-+. +++..+.|++.|+. ++|+-+..+--.. -+.+ ...
T Consensus 465 A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~l~l~---~~~L---~~l 534 (601)
T PRK03659 465 AEAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSALELG---RKTL---VSL 534 (601)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHHHHHH---HHHH---HHc
Confidence 8988887765443322 23333 456777543 46777889999995 4477655321111 1112 223
Q ss_pred CCCHHHHHHHHHHHH
Q psy8193 375 LWTEQEINLRLNNII 389 (428)
Q Consensus 375 ~w~~e~v~~~l~~~m 389 (428)
..+.+++.+.+++.-
T Consensus 535 g~~~~~~~~~~~~~r 549 (601)
T PRK03659 535 GMHPHQAQRAQQHFR 549 (601)
T ss_pred CCCHHHHHHHHHHHH
Confidence 345677766655543
No 120
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.72 E-value=0.25 Score=49.38 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
|+|+..++++.. .+.+.+|++++|.|.|-.++.++..|.+.|++=|.|.++ +.++..++.+..+....
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------TRERAEELADLFGELGA 175 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------CHHHHHHHHHHhhhccc
Confidence 667666655421 124668999999999999999999999999643357774 44555555443322111
Q ss_pred CCCceeccCCCccccc-CceEEeccccccccccc---cc--ccc-cceEEEecCCCCC-CHHHHHHHHHCCCcee
Q psy8193 284 FNEGEKINDSKEFWSI-PCDILIPAAIEDQITIN---NA--NNV-TAKIILEGANGPT-TTEADDILRDKGIILA 350 (428)
Q Consensus 284 ~~~~~~i~~~~~il~~-~~DIliPaA~~~~It~~---na--~~l-~akiIvegAN~p~-t~ea~~iL~~rGI~vi 350 (428)
+..... ..++-.. ++|++|-|+.-+.-..+ .+ ..+ +..++.+---+|. ||= -+.-+++|..++
T Consensus 176 ~~~~~~---~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tpl-L~~A~~~G~~~i 246 (283)
T COG0169 176 AVEAAA---LADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPL-LREARAQGAKTI 246 (283)
T ss_pred cccccc---ccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHH-HHHHHHcCCeEE
Confidence 101111 1122222 69999999975554432 11 222 6789999999996 553 344567786643
No 121
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.65 E-value=0.3 Score=48.84 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
+.|...+++ ..+.++++++++|.|.|..++.++-.|...|++-|.|.+++- + ..++..++.++.+. .
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~-----~--~~~ka~~la~~~~~--~ 174 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD-----E--FFDKALAFAQRVNE--N 174 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc-----c--HHHHHHHHHHHhhh--c
Confidence 677777765 356788999999999999999999999999986567887531 0 13344444433211 0
Q ss_pred CCC-ceeccCCCc---cc--ccCceEEecccccccccccc------cccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 284 FNE-GEKINDSKE---FW--SIPCDILIPAAIEDQITINN------ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 284 ~~~-~~~i~~~~~---il--~~~~DIliPaA~~~~It~~n------a~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
+.. ....+ .++ +. -.++||+|-|+.-+.-...+ ...+ .-.+|.+-.-+|....--+.-+++|..++
T Consensus 175 ~~~~~~~~~-~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 253 (288)
T PRK12749 175 TDCVVTVTD-LADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTI 253 (288)
T ss_pred cCceEEEec-hhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHHHCCCeEE
Confidence 100 11111 111 11 13689999998754432111 1112 24578899988863334455567887765
Q ss_pred c
Q psy8193 351 P 351 (428)
Q Consensus 351 P 351 (428)
+
T Consensus 254 ~ 254 (288)
T PRK12749 254 D 254 (288)
T ss_pred C
Confidence 3
No 122
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.53 E-value=0.26 Score=49.13 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
+.|...+++ ..+.++++++++|.|.|.+|+.++..|.+.|++-|.|.+++- . ..+++.+..++-.. .
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~-----~--~~~~a~~l~~~l~~--~ 176 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD-----D--FYERAEQTAEKIKQ--E 176 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc-----h--HHHHHHHHHHHHhh--c
Confidence 677777665 345578899999999999999999999999997445777421 0 01333333222100 0
Q ss_pred CCCc--ee--ccCCCccc--ccCceEEeccccccccccc---cc---ccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 284 FNEG--EK--INDSKEFW--SIPCDILIPAAIEDQITIN---NA---NNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 284 ~~~~--~~--i~~~~~il--~~~~DIliPaA~~~~It~~---na---~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
++.. .. +++.+++- -..+||+|-|+.-+.-... .. ..+ +-.+|.+-.-+|..-.--+.-+++|..++
T Consensus 177 ~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 177 VPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGCKTV 256 (289)
T ss_pred CCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCCeee
Confidence 1111 11 11111111 1357999998864432211 11 123 34578999988863333445567787664
No 123
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.48 E-value=0.069 Score=57.54 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=29.7
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
..+.+|+|.|+|.+|..+++.+...|++|+ +.|.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~ 195 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDT 195 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 356899999999999999999999999964 7773
No 124
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.47 E-value=0.14 Score=50.64 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=72.0
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC----EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga----kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
++|.++|+|++|+.+++-|.+.|. .| .++| .+.+++.++.++.| .+..+++.++. .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I-~v~~----------r~~~~~~~l~~~~g-------~~~~~~~~e~~-~~ 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQI-ICSD----------LNVSNLKNASDKYG-------ITITTNNNEVA-NS 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceE-EEEC----------CCHHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence 479999999999999999998884 34 4666 35566666554433 22233243443 48
Q ss_pred ceEEecccccccccc---cccccccc-eEEEecCCCCCCHHHHHHHHH--CCCceecccccccc
Q psy8193 301 CDILIPAAIEDQITI---NNANNVTA-KIILEGANGPTTTEADDILRD--KGIILAPDVITNAG 358 (428)
Q Consensus 301 ~DIliPaA~~~~It~---~na~~l~a-kiIvegAN~p~t~ea~~iL~~--rGI~viPD~laNaG 358 (428)
|||+|-|-....+.+ +..+.++. ++|+.-+-+-....-.+.|.. +=+.++|..-+-.|
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg 127 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVG 127 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHc
Confidence 999998887544432 22222333 477777776655555566642 34577777655443
No 125
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.39 E-value=0.054 Score=55.43 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=57.8
Q ss_pred ceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC----------CCC--ceecc
Q psy8193 225 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD----------FNE--GEKIN 291 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~----------~~~--~~~i~ 291 (428)
.||+|.|||.+|+.+++.+.+ .+.++++|+|++ .+......++.| ..- |.+ .....
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~----------~~~~~~la~~~G-~~~~~~~~~~~~~~~~~~i~V~~ 70 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK----------PDYEARVAVEKG-YPLYVADPEREKAFEEAGIPVAG 70 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC----------hHHHHHHHHhcC-CCccccCccccccccCCceEEcC
Confidence 489999999999999998876 579999999942 222222222222 110 111 11112
Q ss_pred CCCcccccCceEEecccccccccccccccc---cceEEEecC
Q psy8193 292 DSKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGA 330 (428)
Q Consensus 292 ~~~~il~~~~DIliPaA~~~~It~~na~~l---~akiIvegA 330 (428)
+.++++ .++|+++.|+. ...+.+++... ++++|..+.
T Consensus 71 ~~~el~-~~vDVVIdaT~-~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 71 TIEDLL-EKADIVVDATP-GGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred ChhHhh-ccCCEEEECCC-chhhHHHHHHHHHCCCEEEEcCC
Confidence 233444 47999999984 44666666654 578887765
No 126
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.36 E-value=0.09 Score=53.88 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHH-CCC-EEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 202 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK-AGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 202 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~-~Ga-kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.|.+-...+++.+.+.++.++++++|+|.|. |.+|+.+++.|.+ .|. +++ +.++ +.+.+.+..++.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R----------~~~rl~~La~el 201 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR----------QQERLQELQAEL 201 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC----------CHHHHHHHHHHh
Confidence 4677777788888888999999999999999 8999999999976 464 554 5553 233444444332
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc--ccc-ccccccccccceEEEecCCCC-CCHHH
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI--EDQ-ITINNANNVTAKIILEGANGP-TTTEA 338 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~--~~~-It~~na~~l~akiIvegAN~p-~t~ea 338 (428)
+ .+...+ .++.+ .++|+++=|+- ... |+.+... +-.+|++.|.-. +.|+.
T Consensus 202 ~------~~~i~~-l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v 255 (340)
T PRK14982 202 G------GGKILS-LEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKV 255 (340)
T ss_pred c------cccHHh-HHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCccc
Confidence 1 111112 22333 36899888774 342 6666543 457899998755 55543
No 127
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.30 E-value=0.071 Score=48.43 Aligned_cols=43 Identities=26% Similarity=0.422 Sum_probs=34.1
Q ss_pred ceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHH
Q psy8193 225 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 275 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~ 275 (428)
.||+|-|||.+|+.+++.+.. ....||+|.|.. .|++.+.-+.
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~--------~~~~~~a~Ll 44 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA--------PDPEYLAYLL 44 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS--------SSHHHHHHHH
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEeccc--------ccchhhhhhh
Confidence 489999999999999998874 568999999953 4666654443
No 128
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.28 E-value=0.049 Score=53.73 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=60.5
Q ss_pred ceEEEEe-ccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqG-fGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
.+|+|.| +|.+|+.+++.+.+ .+.++++++|+...-. .|-|..++.... .+ +....++.+++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~~-------~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGIG-------KV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCcC-------cC-CceeeCCHHHh-cCCCC
Confidence 4899999 69999999998876 6899999999532110 133433332110 11 12233323444 45799
Q ss_pred EEecccccccccccccccc---cceEEEecCCCCCCHH
Q psy8193 303 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTE 337 (428)
Q Consensus 303 IliPaA~~~~It~~na~~l---~akiIvegAN~p~t~e 337 (428)
++|.|+.... +.+++... +..+|+|-. .+|++
T Consensus 71 vVIdfT~p~~-~~~~~~~al~~g~~vVigtt--g~~~e 105 (266)
T TIGR00036 71 VLIDFTTPEG-VLNHLKFALEHGVRLVVGTT--GFSEE 105 (266)
T ss_pred EEEECCChHH-HHHHHHHHHHCCCCEEEECC--CCCHH
Confidence 9999995433 33444333 667888775 35654
No 129
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.27 E-value=0.046 Score=55.08 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+.|..|+... ++++|.+++|++|+|+|-| .||+.+|.+|.+.|+.|. ++++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~ 191 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHS 191 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECC
Confidence 47888887665 4566899999999999996 999999999999999985 7765
No 130
>PRK08223 hypothetical protein; Validated
Probab=95.23 E-value=0.014 Score=58.29 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=32.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|+|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3788999999999999999999999998666788843
No 131
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.23 E-value=0.058 Score=49.52 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
-.+.|..|+...+ ++++.+++|++|+|+|-++ ||+.++.+|.++|+.|. +++++- -| +
T Consensus 15 ~~PcTp~aii~lL----~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~T-------~~---l------ 73 (160)
T PF02882_consen 15 FVPCTPLAIIELL----EYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSKT-------KN---L------ 73 (160)
T ss_dssp S--HHHHHHHHHH----HHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TTS-------SS---H------
T ss_pred CcCCCHHHHHHHH----HhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCCC-------Cc---c------
Confidence 3578888877655 4578899999999999975 99999999999999984 787531 01 1
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
.+ +...+||+|-|+. .+.|+++.+..
T Consensus 74 ----------------~~-~~~~ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 74 ----------------QE-ITRRADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp ----------------HH-HHTTSSEEEE-SSSTT-B-GGGS-T
T ss_pred ----------------cc-eeeeccEEeeeeccccccccccccC
Confidence 11 2247788888775 77777775544
No 132
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.22 E-value=0.046 Score=53.90 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=63.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 303 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DI 303 (428)
+||+|+|+|++|+..++.|.+. +..+++|++... ..++..+.... +...+++.+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~--------~~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH--------SIDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC--------CHHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 5899999999999999998875 688888886321 11111111100 12333434455 677999
Q ss_pred Eecccccccccccccccc---cceEEEecCCCCCC----HHHHHHHHHCCCcee
Q psy8193 304 LIPAAIEDQITINNANNV---TAKIILEGANGPTT----TEADDILRDKGIILA 350 (428)
Q Consensus 304 liPaA~~~~It~~na~~l---~akiIvegAN~p~t----~ea~~iL~~rGI~vi 350 (428)
++.|+..... .+.+... ++.+|++-.-.-.. ++..+..+++|..+.
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 9999976544 4444443 45667653211111 223445667786543
No 133
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.19 E-value=0.38 Score=47.42 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCC----CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
+.++|.++|.|++|+.+++.|.+.| .+| .++|++ +.+.+.++.++.+ .+..+++.++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r~---------~~~~~~~l~~~~g-------~~~~~~~~e~~- 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNRS---------NETRLQELHQKYG-------VKGTHNKKELL- 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECCC---------CHHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence 4579999999999999999999987 444 456631 1233444444322 22222233333
Q ss_pred cCceEEeccccccccccc---cccccc-ceEEEecCCCCCCHH-HHHHH
Q psy8193 299 IPCDILIPAAIEDQITIN---NANNVT-AKIILEGANGPTTTE-ADDIL 342 (428)
Q Consensus 299 ~~~DIliPaA~~~~It~~---na~~l~-akiIvegAN~p~t~e-a~~iL 342 (428)
.+|||+|-|-....+.+. ..+.++ -++|+.-+++- +++ ..+.+
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~~l~~~~ 111 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STHSIRNLL 111 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHHHHHHHc
Confidence 478999988775554331 112232 35888876654 344 44433
No 134
>KOG0068|consensus
Probab=95.19 E-value=0.042 Score=55.86 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=64.9
Q ss_pred hCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc
Q psy8193 218 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 297 (428)
Q Consensus 218 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il 297 (428)
+|.++.|+|+.|.|||.+|+.+|+.+...|.++|+--+ +.+.+..+.+ +.+.++ .+++|
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dp----------i~~~~~~~a~----------gvq~vs-l~Eil 198 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDP----------ITPMALAEAF----------GVQLVS-LEEIL 198 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecC----------CCchHHHHhc----------cceeee-HHHHH
Confidence 46789999999999999999999999999999974333 4444544332 234444 55666
Q ss_pred ccCceEE---ecccc--cccccccccccc-cceEEEecCCCCC--CHHHHHHHH
Q psy8193 298 SIPCDIL---IPAAI--EDQITINNANNV-TAKIILEGANGPT--TTEADDILR 343 (428)
Q Consensus 298 ~~~~DIl---iPaA~--~~~It~~na~~l-~akiIvegAN~p~--t~ea~~iL~ 343 (428)
. .||.+ +|.+. ++.+|.+.-.+. +---|+..|-+.+ ++..-+.|.
T Consensus 199 ~-~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 199 P-KADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred h-hcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh
Confidence 3 34443 34443 677777766555 2223444555553 333345553
No 135
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.16 E-value=0.4 Score=47.83 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
|.|...+++. .+.++++++++|.|.|-+++.++-.|.+.|++-|.|.++ +.++..++.+... ..
T Consensus 111 ~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------~~~ka~~La~~~~--~~ 174 (283)
T PRK14027 111 VSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------DTSRAQALADVIN--NA 174 (283)
T ss_pred HHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------CHHHHHHHHHHHh--hc
Confidence 7888888763 234678999999999999999999999999876678884 4555555544311 01
Q ss_pred CCCc--eeccCC---CcccccCceEEecccccccccccc----cccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 284 FNEG--EKINDS---KEFWSIPCDILIPAAIEDQITINN----ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 284 ~~~~--~~i~~~---~~il~~~~DIliPaA~~~~It~~n----a~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
++.. ...+ . ++.+ ..+||+|-|+.-+.-..+. ...+ ...+|.+-.-+|....--+.-+++|..++
T Consensus 175 ~~~~~~~~~~-~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 249 (283)
T PRK14027 175 VGREAVVGVD-ARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETL 249 (283)
T ss_pred cCcceEEecC-HhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHHHCCCEEE
Confidence 1110 1111 1 1122 3689999998644321111 1112 34688899888863333455567787664
No 136
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.06 E-value=0.72 Score=46.44 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=65.1
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCC------ceeccCCCccc
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE------GEKINDSKEFW 297 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~------~~~i~~~~~il 297 (428)
.++|+|+|.|++|..+|..|.+.|..|. +.++ +.+.+..+.+.......+++ ....+++.+.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r----------~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWAR----------RPEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 3589999999999999999999999875 5553 33444333332111111111 12222222333
Q ss_pred ccCceEEeccccccccccccccccc-ceEEEecCCCCC-----CHHHHHHHHH---CCCc
Q psy8193 298 SIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT-----TTEADDILRD---KGII 348 (428)
Q Consensus 298 ~~~~DIliPaA~~~~It~~na~~l~-akiIvegAN~p~-----t~ea~~iL~~---rGI~ 348 (428)
.+||+++-|.....+ .+..+.++ -.+|+.-.|+-. .....+.+.+ +++.
T Consensus 73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~ 130 (328)
T PRK14618 73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA 130 (328)
T ss_pred -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence 479999998876654 44444442 246777788521 2344455655 6653
No 137
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.06 E-value=0.54 Score=46.70 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~ 283 (428)
++|+..+++. .+.+ .+++++|.|.|-.++.++..|.+.|++-|.|.++ +.++..++.+..+
T Consensus 107 ~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------~~~~a~~la~~~~---- 167 (272)
T PRK12550 107 YIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR----------NEKTGKALAELYG---- 167 (272)
T ss_pred HHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC----------CHHHHHHHHHHhC----
Confidence 7787777763 3554 3569999999999999999999999865568874 4455555544321
Q ss_pred CCCceeccCCCcccccCceEEecccccccccccc-----c--ccc-cceEEEecCCCCCCHHHHHHHHHCCCcee
Q psy8193 284 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINN-----A--NNV-TAKIILEGANGPTTTEADDILRDKGIILA 350 (428)
Q Consensus 284 ~~~~~~i~~~~~il~~~~DIliPaA~~~~It~~n-----a--~~l-~akiIvegAN~p~t~ea~~iL~~rGI~vi 350 (428)
+ .. . +++....+|++|-|+.-+.-...+ . ..+ +..+|.+-.-+|....--+.-+++|..++
T Consensus 168 ~---~~-~--~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i 236 (272)
T PRK12550 168 Y---EW-R--PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVI 236 (272)
T ss_pred C---cc-h--hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEe
Confidence 1 00 0 112224689999998754432111 1 112 34578888888863334455567887765
No 138
>PLN02858 fructose-bisphosphate aldolase
Probab=95.05 E-value=0.44 Score=57.32 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=98.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
++|.++|+|++|..+|+.|...|.+|+ +.| .+.+++.++.+.. +...+++.++ ..+||++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~G--------a~~~~s~~e~-~~~aDvV 384 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVC-GYD----------VYKPTLVRFENAG--------GLAGNSPAEV-AKDVDVL 384 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHcC--------CeecCCHHHH-HhcCCEE
Confidence 789999999999999999999999874 667 4556665554432 2222223333 3479999
Q ss_pred eccccc-----ccccc--cccccc-cceEEEecCCC-C-CCHHHHHHHHH--CCCceeccccccccchh----------h
Q psy8193 305 IPAAIE-----DQITI--NNANNV-TAKIILEGANG-P-TTTEADDILRD--KGIILAPDVITNAGGVI----------V 362 (428)
Q Consensus 305 iPaA~~-----~~It~--~na~~l-~akiIvegAN~-p-~t~ea~~iL~~--rGI~viPD~laNaGGVi----------~ 362 (428)
+-|-.. .++.. .-+..+ .-++|++-... | .+.+..+.+++ +|+.|+=-.+. ||.. +
T Consensus 385 i~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVs--Gg~~~A~~G~L~imv 462 (1378)
T PLN02858 385 VIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVS--GGVKRAAMGTLTIMA 462 (1378)
T ss_pred EEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCC--CChhhhhcCCceEEE
Confidence 976652 22211 112222 23566655443 3 24566677888 99988754442 4431 1
Q ss_pred h----HHHHH----hhccc-CCC---C------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8193 363 S----YFEWV----QNLSN-LLW---T------EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFII 414 (428)
Q Consensus 363 s----~~E~~----qn~~~-~~w---~------~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 414 (428)
+ .|+.+ +.+.. .++ + ..-++.-+.......+.+.+..+++.|+++.+...++
T Consensus 463 gG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 463 SGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred ECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 12222 22211 111 1 1223344444445677888899999999988876544
No 139
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.03 E-value=0.067 Score=55.71 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=79.5
Q ss_pred ceEEEEeccHHHHHHHHHHHHCC-CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceecc--CC---Ccccc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN--DS---KEFWS 298 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~--~~---~~il~ 298 (428)
++|+|+|.|+||+.+|+.|++.| ..| .|+|+ ..+++.+..+..+. .. .+..++ +. .+++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdR----------s~~~~~~i~~~~~~--~v-~~~~vD~~d~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEV-TIADR----------SKEKCARIAELIGG--KV-EALQVDAADVDALVALIK 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceE-EEEeC----------CHHHHHHHHhhccc--cc-eeEEecccChHHHHHHHh
Confidence 58999999999999999999998 777 58884 55666666554321 00 111122 11 12333
Q ss_pred cCceEEeccccccccccccccc-ccc-eEEEecCCCCC-CHHHHHHHHHCCCceeccccccccchhhhHHHHHh
Q psy8193 299 IPCDILIPAAIEDQITINNANN-VTA-KIILEGANGPT-TTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 369 (428)
Q Consensus 299 ~~~DIliPaA~~~~It~~na~~-l~a-kiIvegAN~p~-t~ea~~iL~~rGI~viPD~laNaGGVi~s~~E~~q 369 (428)
+.|++|-|+...+ +..-++. +++ .-++.-+|.+- .-+-++..++.||.++|+. --+-|++..+.....
T Consensus 68 -~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a~ 138 (389)
T COG1748 68 -DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYAA 138 (389)
T ss_pred -cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHHH
Confidence 4599999986543 2221111 121 23455555554 3455677889999999987 345688877766553
No 140
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.03 E-value=0.055 Score=54.11 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.++|..||+.. +++++.+++|++|+|+|-++ ||+.++.+|.++|+.| .+++++- -| |.
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atV-tv~hs~T-------~~---l~------ 197 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTV-TVCHRFT-------KN---LR------ 197 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeE-EEEECCC-------CC---HH------
Confidence 57898888765 45678999999999999999 9999999999999988 4887531 00 10
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEecC
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 330 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIvegA 330 (428)
-....+||+|.|.. .+.++.+.+..= .+|++.+
T Consensus 198 -----------------~~~~~ADIvi~avG~p~~v~~~~vk~g--avVIDvG 231 (285)
T PRK10792 198 -----------------HHVRNADLLVVAVGKPGFIPGEWIKPG--AIVIDVG 231 (285)
T ss_pred -----------------HHHhhCCEEEEcCCCcccccHHHcCCC--cEEEEcc
Confidence 12247889888885 667777655432 3566655
No 141
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.01 E-value=0.25 Score=48.73 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=46.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
++|.|+|.|.+|+.+|+.|.+.|.+|+ +.| .+.+.+.+..+. |.+.. .++..+. -.+||++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d----------~~~~~~~~a~~~-g~~~~------~~~~~~~-~~~aDlV 61 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVS----------RRESTCERAIER-GLVDE------ASTDLSL-LKDCDLV 61 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHC-CCccc------ccCCHhH-hcCCCEE
Confidence 379999999999999999999999875 556 344555544432 32211 1112222 2589999
Q ss_pred ecccccccc
Q psy8193 305 IPAAIEDQI 313 (428)
Q Consensus 305 iPaA~~~~I 313 (428)
|-|.....+
T Consensus 62 ilavp~~~~ 70 (279)
T PRK07417 62 ILALPIGLL 70 (279)
T ss_pred EEcCCHHHH
Confidence 999876554
No 142
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.057 Score=54.01 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~ 256 (428)
.++|..||...+ ++++.+++|++|+|+|-++ ||+.++.+|..+|+.| .++++
T Consensus 144 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV-tv~hs 196 (287)
T PRK14176 144 VPCTPHGVIRAL----EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATV-SVCHV 196 (287)
T ss_pred CCCcHHHHHHHH----HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEE-EEEec
Confidence 578988887654 5678999999999999999 9999999999999998 58874
No 143
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.97 E-value=0.29 Score=49.28 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=73.1
Q ss_pred CCCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
...+++.|.|.|..|+..++.+.. .+.+-|.|.| .+.++..++.++.... ++ ... .++.++.+ .+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~----------r~~~~a~~~a~~~~~~-~~-~~~-~~~~~~av-~~ 188 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG----------RTAASAAAFCAHARAL-GP-TAE-PLDGEAIP-EA 188 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc----------CCHHHHHHHHHHHHhc-CC-eeE-ECCHHHHh-hc
Confidence 467899999999999999999865 6766677888 4667766666554321 11 111 22234444 49
Q ss_pred ceEEecccc--cccccccccccccceEEEecCCCCCCHHHHHHHHHCC
Q psy8193 301 CDILIPAAI--EDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 346 (428)
Q Consensus 301 ~DIliPaA~--~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rG 346 (428)
+||++-|+. +.+++.. -+=.+-+++=|++.|-..|.+..+-.+-
T Consensus 189 aDiVitaT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~~~~~~~a 234 (304)
T PRK07340 189 VDLVVTATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELAPRTVRGS 234 (304)
T ss_pred CCEEEEccCCCCceeCcc--CCCCCEEEecCCCCCCcccCCHHHHhhC
Confidence 999999986 4555542 2345778889999997777654444444
No 144
>PRK07680 late competence protein ComER; Validated
Probab=94.93 E-value=0.053 Score=53.30 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=67.6
Q ss_pred eEEEEeccHHHHHHHHHHHHCCC---EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
+|.|+|.|++|+.+++.|.+.|. .-|.++|+ +.+.+.++.++. ++.....++.+++ .+||
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r----------~~~~~~~~~~~~------~g~~~~~~~~~~~-~~aD 64 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR----------TPAKAYHIKERY------PGIHVAKTIEEVI-SQSD 64 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC----------CHHHHHHHHHHc------CCeEEECCHHHHH-HhCC
Confidence 68999999999999999999884 23457773 445554444332 2233333233443 4799
Q ss_pred EEecccccccccc---cccccc-cceEEEecCCCCCCHHHHHHHHHCCCceeccc
Q psy8193 303 ILIPAAIEDQITI---NNANNV-TAKIILEGANGPTTTEADDILRDKGIILAPDV 353 (428)
Q Consensus 303 IliPaA~~~~It~---~na~~l-~akiIvegAN~p~t~ea~~iL~~rGI~viPD~ 353 (428)
+++-|.....+.+ +..+.+ +-++|+.-+|+-...+..+.+..+.+.++|..
T Consensus 65 iVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~ 119 (273)
T PRK07680 65 LIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI 119 (273)
T ss_pred EEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence 9999886444322 122333 24688888876533444555555566788753
No 145
>KOG1370|consensus
Probab=94.91 E-value=0.04 Score=55.34 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=58.4
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCH-HHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI-PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~-~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
+.|+-++|-|+|+||...|..|...|++|+ |+. +|+ .+|....+ + .+..+ .++.. .+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTE----------iDPI~ALQAaMe------G---~~V~t-m~ea~-~e 269 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTE----------IDPICALQAAME------G---YEVTT-LEEAI-RE 269 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-Eec----------cCchHHHHHHhh------c---cEeee-HHHhh-hc
Confidence 689999999999999999999999999986 887 665 45544433 2 23333 33332 47
Q ss_pred ceEEecccc-ccccccccccccc
Q psy8193 301 CDILIPAAI-EDQITINNANNVT 322 (428)
Q Consensus 301 ~DIliPaA~-~~~It~~na~~l~ 322 (428)
.||||-++. .++|+.+.-++.+
T Consensus 270 ~difVTtTGc~dii~~~H~~~mk 292 (434)
T KOG1370|consen 270 VDIFVTTTGCKDIITGEHFDQMK 292 (434)
T ss_pred CCEEEEccCCcchhhHHHHHhCc
Confidence 899999987 7888887666653
No 146
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.91 E-value=0.097 Score=52.41 Aligned_cols=168 Identities=18% Similarity=0.174 Sum_probs=99.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
.+|+++|+|++|+..|+.|.+.|+.+ .|.| .++++..+...+.| ++..+++ .-....|||+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v-~v~~----------r~~~ka~~~~~~~G-------a~~a~s~-~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEV-TVYN----------RTPEKAAELLAAAG-------ATVAASP-AEAAAEADVV 61 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEE-EEEe----------CChhhhhHHHHHcC-------CcccCCH-HHHHHhCCEE
Confidence 47999999999999999999999998 4888 67777444433322 3333312 1234578888
Q ss_pred ecccc-----ccccccc--ccccc-cceEEEecCCC-CC-CHHHHHHHHHCCCceeccccccccchhhh-----------
Q psy8193 305 IPAAI-----EDQITIN--NANNV-TAKIILEGANG-PT-TTEADDILRDKGIILAPDVITNAGGVIVS----------- 363 (428)
Q Consensus 305 iPaA~-----~~~It~~--na~~l-~akiIvegAN~-p~-t~ea~~iL~~rGI~viPD~laNaGGVi~s----------- 363 (428)
|-|-. ..++.++ -+..+ +-+++++-... |. +.+..+.++++|+.++=-.+. ||+.-.
T Consensus 62 itmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVs--Gg~~~A~~GtLtimvGG 139 (286)
T COG2084 62 ITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVS--GGVPGAAAGTLTIMVGG 139 (286)
T ss_pred EEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCcc--CCchhhhhCceEEEeCC
Confidence 87643 3333321 12212 34566665544 43 567778899999999877766 766321
Q ss_pred ---HHHHHh--------hcccCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy8193 364 ---YFEWVQ--------NLSNLLW-----TEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFI 413 (428)
Q Consensus 364 ---~~E~~q--------n~~~~~w-----~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~ 413 (428)
.||-++ |..+.-- .-.-+++-+-......+.+-+..+++.|+++...-.+
T Consensus 140 ~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~v 205 (286)
T COG2084 140 DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEV 205 (286)
T ss_pred CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 122211 0100000 0123444444445566777788888888887665443
No 147
>PRK08328 hypothetical protein; Provisional
Probab=94.86 E-value=0.024 Score=54.76 Aligned_cols=120 Identities=19% Similarity=0.299 Sum_probs=64.9
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH-hcCCCcCCCCceeccCCCccccc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~-~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.+++.+|+|.|.|-+|+.+++.|...|..-+.+.|.+ =++...|-+..- ....+...+.++. . ...+...
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~ve~sNL~Rq~l~~~~dvG~~~k~~~-a-~~~l~~~ 94 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------TPELSNLNRQILHWEEDLGKNPKPLS-A-KWKLERF 94 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------ccChhhhccccccChhhcCchHHHHH-H-HHHHHHh
Confidence 3678899999999999999999999997666677732 122222221100 0000000000000 0 0112233
Q ss_pred CceEEecccccccccccccccc--cceEEEecCCCCCCHH-HHHHHHHCCCcee
Q psy8193 300 PCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTE-ADDILRDKGIILA 350 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~na~~l--~akiIvegAN~p~t~e-a~~iL~~rGI~vi 350 (428)
..|+-|.+ ....++++|+..+ ++.+|+.+.-++-+.. ..+...+.||.++
T Consensus 95 np~v~v~~-~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 95 NSDIKIET-FVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred CCCCEEEE-EeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 44555554 2233566665544 5677887765554332 2345667787765
No 148
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.067 Score=53.51 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHH-HHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNV-GSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakvVaVsD~ 256 (428)
-.+.|..|+... +++++++++|++|+|+|.|++ |+.++.+|.++|+.|. ++++
T Consensus 137 ~~PcTp~aii~l----L~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 137 FRPCTPYGVMKM----LESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred CcCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 357888887654 566799999999999999887 9999999999999985 5553
No 149
>PLN02858 fructose-bisphosphate aldolase
Probab=94.75 E-value=0.62 Score=56.04 Aligned_cols=171 Identities=15% Similarity=0.189 Sum_probs=104.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
...+|.++|+|++|+.+|+.|.+.|+.|. |.| .+.++..++.+.. +...+++.++. .+||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~d----------r~~~~~~~l~~~G--------a~~~~s~~e~a-~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFE----------ISTPLMEKFCELG--------GHRCDSPAEAA-KDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHcC--------CeecCCHHHHH-hcCC
Confidence 35689999999999999999999999984 777 5667777766542 33333233333 4789
Q ss_pred EEecccccccccccc-------cccc-cceEEEecC-CCC-CCHHHHHHHHHCC--Cceeccccccccchh---------
Q psy8193 303 ILIPAAIEDQITINN-------ANNV-TAKIILEGA-NGP-TTTEADDILRDKG--IILAPDVITNAGGVI--------- 361 (428)
Q Consensus 303 IliPaA~~~~It~~n-------a~~l-~akiIvegA-N~p-~t~ea~~iL~~rG--I~viPD~laNaGGVi--------- 361 (428)
++|-|-.......+. +..+ .-++|++-. ..| .+.+..+.+.++| +.|+=-.+. ||+.
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVs--Gg~~~A~~G~L~i 140 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVS--KGMSDLLNGKLMI 140 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCc--CCHHHHhcCCeEE
Confidence 998876543332222 2223 235666654 444 3567778899999 877644444 4431
Q ss_pred -h----hHHHHHh----hccc-CC-C----C----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8193 362 -V----SYFEWVQ----NLSN-LL-W----T----EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 415 (428)
Q Consensus 362 -~----s~~E~~q----n~~~-~~-w----~----~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a 415 (428)
+ ..+|-++ .... .+ . - ..-++.-+...+..++.+-+..+++.|+++.....++.
T Consensus 141 mvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 141 IASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred EEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 1 1122222 1111 11 1 0 12344445555556788888999999999988877654
No 150
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.71 E-value=0.063 Score=62.25 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHHC-CCE------------EEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCcee
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKA-GAK------------IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 289 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~-Gak------------vVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~ 289 (428)
+.++|+|.|.|.||+..|+.|.+. ++. +|+|+| .+.+...+..++...+ .....
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD----------~~~~~a~~la~~~~~~---~~v~l 634 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVAS----------LYLKDAKETVEGIENA---EAVQL 634 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEEC----------CCHHHHHHHHHhcCCC---ceEEe
Confidence 467999999999999999999875 333 578999 6777776665542111 00122
Q ss_pred -ccCCCcccc--cCceEEecccccccccccccc---cccceEEEecCCCCCCHHHHHHHHHCCCceecccc
Q psy8193 290 -INDSKEFWS--IPCDILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 354 (428)
Q Consensus 290 -i~~~~~il~--~~~DIliPaA~~~~It~~na~---~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~l 354 (428)
++|.+++.. .++|++|-|+.. ..+.+.|. +.++-++++.-..+-+.+.++..++.|+.++|+.-
T Consensus 635 Dv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 635 DVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred ecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 233455655 479999988864 34444333 23566777762222223345667788999998876
No 151
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.66 E-value=0.39 Score=43.46 Aligned_cols=32 Identities=31% Similarity=0.622 Sum_probs=27.9
Q ss_pred ceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~ 256 (428)
.+|+|.|||.+|+.+++.+.+ .+.++++|.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 479999999999999998875 57999999883
No 152
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.66 E-value=0.023 Score=55.14 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=30.1
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
|+..+|+|.|.|.||+++++.|.+.|..=+.+.|.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 67889999999999999999999999744457764
No 153
>PRK06046 alanine dehydrogenase; Validated
Probab=94.64 E-value=0.33 Score=49.26 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
.-.++.|+|.|..|++.++.|.. .+.+.|.|.| .+.+...++.++.....++ .....++.++.++ +
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~----------r~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a 194 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYD----------RTKSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C 194 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEEC----------CCHHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence 45799999999999999998874 5788889998 5666666655432111011 1222333455554 9
Q ss_pred eEEeccccc--ccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccc
Q psy8193 302 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 353 (428)
Q Consensus 302 DIliPaA~~--~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~ 353 (428)
||++-|+.. -++..+..+ =.+-+..=|++-|-..|.+.-+-++.- ++-|-
T Consensus 195 DiVv~aTps~~P~~~~~~l~-~g~hV~~iGs~~p~~~El~~~~~~~a~-vvvD~ 246 (326)
T PRK06046 195 DILVTTTPSRKPVVKAEWIK-EGTHINAIGADAPGKQELDPEILLRAK-VVVDD 246 (326)
T ss_pred CEEEEecCCCCcEecHHHcC-CCCEEEecCCCCCccccCCHHHHhCCc-EEECC
Confidence 999998863 334444332 245677889999966666554445553 33354
No 154
>PLN02712 arogenate dehydrogenase
Probab=94.58 E-value=0.1 Score=58.19 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=64.4
Q ss_pred hCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc
Q psy8193 218 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 297 (428)
Q Consensus 218 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il 297 (428)
.+.++++++|.|+|+|++|+.+|+.|.+.|.+|+ +.|.+ .. . +...+.| ....++.+++.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~dr~----------~~-~-~~a~~~G-------v~~~~~~~el~ 422 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYSRS----------DY-S-DEAQKLG-------VSYFSDADDLC 422 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEECC----------hH-H-HHHHHcC-------CeEeCCHHHHH
Confidence 4557789999999999999999999999999887 44532 11 1 1122222 22222234454
Q ss_pred ccCceEEecccccc----ccccccccccc-ceEEEecCCCCC-CHHHHHHHHHCCCcee
Q psy8193 298 SIPCDILIPAAIED----QITINNANNVT-AKIILEGANGPT-TTEADDILRDKGIILA 350 (428)
Q Consensus 298 ~~~~DIliPaA~~~----~It~~na~~l~-akiIvegAN~p~-t~ea~~iL~~rGI~vi 350 (428)
..+||++|-|.... ++.+-....++ -.+|++-+..-. .-++.+.+...|+.++
T Consensus 423 ~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 423 EEHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred hcCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceE
Confidence 44689999996532 22221111232 347777665532 1222233334566555
No 155
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.58 E-value=0.017 Score=57.25 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|++.+|+|.|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3688999999999999999999999995444677753
No 156
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.55 E-value=0.41 Score=50.38 Aligned_cols=131 Identities=19% Similarity=0.377 Sum_probs=71.3
Q ss_pred ceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHH---HHHHHHhcCCCcC---C-C------Cceec
Q psy8193 225 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPK---LQKYVTFTRSIKD---F-N------EGEKI 290 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~---l~~~~~~~g~l~~---~-~------~~~~i 290 (428)
.||.|-|||.+|+.++|.+.+ .+.+||+|-|.. .|.+. |+++--.+|.+.+ + . +++.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 689999998843 34443 3333223343321 0 0 11111
Q ss_pred --c---CCCc-cc-ccCceEEecccccccccccccccc---cc-eEEEecC--CCCC-CHHH-HHHHHHCCCceeccccc
Q psy8193 291 --N---DSKE-FW-SIPCDILIPAAIEDQITINNANNV---TA-KIILEGA--NGPT-TTEA-DDILRDKGIILAPDVIT 355 (428)
Q Consensus 291 --~---~~~~-il-~~~~DIliPaA~~~~It~~na~~l---~a-kiIvegA--N~p~-t~ea-~~iL~~rGI~viPD~la 355 (428)
. ++++ -| +.++||.+.|+.. ..+.+.+... .| |+|+.+. +.|+ =++. .+.|..+ ..+++
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~-----~~IIS 231 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPN-----MNIVS 231 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCC-----CCeee
Confidence 1 1222 23 3578999998853 3555555532 34 5666654 2231 1111 1233221 23567
Q ss_pred cccchhhhHHHHHh
Q psy8193 356 NAGGVIVSYFEWVQ 369 (428)
Q Consensus 356 NaGGVi~s~~E~~q 369 (428)
|+-..+.+-.-.++
T Consensus 232 naSCTTn~Lap~lk 245 (421)
T PLN02272 232 NASCTTNCLAPLAK 245 (421)
T ss_pred CCCcHHHHHHHHHH
Confidence 77766665544443
No 157
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.53 E-value=0.051 Score=45.74 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=30.6
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++|++|+|+|.|+||..-++.|.+.|++|.-|+.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 368999999999999999999999999999986776
No 158
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.52 E-value=0.13 Score=51.81 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEe-ccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.++|..||+..+ ++++.+++|++|+|+| .|.||+.+|.+|.+.|+.|+ |+++
T Consensus 137 ~~PcTp~ai~~ll----~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~ 190 (296)
T PRK14188 137 LVPCTPLGCMMLL----RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS 190 (296)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence 3578988887654 5578899999999999 99999999999999999985 7753
No 159
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.52 E-value=0.021 Score=55.61 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=31.6
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.|++.+|+|.|.|.+|+.+|+.|...|..=+.+.|.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367899999999999999999999999766668774
No 160
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.50 E-value=0.078 Score=51.26 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=54.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHC--CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
++|.|+|+|++|..+++++.+- .+++++|.|. |.++.++..+..+ ....++.++++ .+.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~----------~~ek~~~~~~~~~-------~~~~s~ide~~-~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR----------DEEKAKELEASVG-------RRCVSDIDELI-AEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC----------CHHHHHHHHhhcC-------CCccccHHHHh-hccc
Confidence 4689999999999999998753 5899999994 5566655544322 11113245666 7899
Q ss_pred EEecccccccccccccccc
Q psy8193 303 ILIPAAIEDQITINNANNV 321 (428)
Q Consensus 303 IliPaA~~~~It~~na~~l 321 (428)
++++||..+.+-+---+-|
T Consensus 63 lvVEaAS~~Av~e~~~~~L 81 (255)
T COG1712 63 LVVEAASPEAVREYVPKIL 81 (255)
T ss_pred eeeeeCCHHHHHHHhHHHH
Confidence 9999998777755433333
No 161
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.44 E-value=0.11 Score=51.97 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.++|..||... +++++.+++|++|+|+|- |.||+.+|.+|.+.|+.|+ ++.+
T Consensus 137 ~~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s 190 (284)
T PRK14179 137 MIPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS 190 (284)
T ss_pred CcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence 357899888655 456799999999999999 9999999999999999985 6643
No 162
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.42 E-value=0.084 Score=49.88 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=32.2
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998545688864
No 163
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.42 E-value=0.45 Score=48.81 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=29.2
Q ss_pred ceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCC
Q psy8193 225 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDK 257 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~ 257 (428)
.||+|.|||.+|+..++.+.+ .+.++|+|.|..
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~ 39 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF 39 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence 699999999999999998876 479999999854
No 164
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.39 E-value=0.14 Score=51.31 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.++|.+||...+ ++++.+++|++|+|+|- ..||+-++.+|.++++.|. ++.+
T Consensus 134 ~~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs 187 (287)
T PRK14173 134 LEPCTPAGVVRLL----KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHS 187 (287)
T ss_pred CCCCCHHHHHHHH----HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCC
Confidence 3578988887654 56799999999999998 5689999999999999884 7764
No 165
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.37 E-value=0.082 Score=53.32 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHH-HHHHHHhcCCCcCCCCceeccCCCcccc--
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPK-LQKYVTFTRSIKDFNEGEKINDSKEFWS-- 298 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~-l~~~~~~~g~l~~~~~~~~i~~~~~il~-- 298 (428)
+..+|+|+|.|++|...+..+.+ .+..+++|+| +|.+. -++..++.|--..| ++.++++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvd----------id~es~gla~A~~~Gi~~~~------~~ie~LL~~~ 66 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVG----------IDPESDGLARARRLGVATSA------EGIDGLLAMP 66 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEe----------CChhhHHHHHHHHcCCCccc------CCHHHHHhCc
Confidence 46799999999999986665554 5799999999 66643 23334444311111 21345554
Q ss_pred --cCceEEecccccccccccccccc---cceEEEec--CCCCC-CHH--HHHHHHHC--CCceeccc
Q psy8193 299 --IPCDILIPAAIEDQITINNANNV---TAKIILEG--ANGPT-TTE--ADDILRDK--GIILAPDV 353 (428)
Q Consensus 299 --~~~DIliPaA~~~~It~~na~~l---~akiIveg--AN~p~-t~e--a~~iL~~r--GI~viPD~ 353 (428)
.++|+++-|+. +..+.+++.+. .+.+|.+- +++|+ =|+ .++.+..+ ++...|.-
T Consensus 67 ~~~dIDiVf~AT~-a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ 132 (302)
T PRK08300 67 EFDDIDIVFDATS-AGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQ 132 (302)
T ss_pred CCCCCCEEEECCC-HHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccH
Confidence 47999999884 45777777766 56666653 46674 232 33444434 54444443
No 166
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.36 E-value=0.12 Score=51.71 Aligned_cols=53 Identities=26% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.++|..|+... +++++.+++|++|+|+|-| .||+.+|.+|.++|+.| .++++
T Consensus 136 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtV-tv~hs 189 (285)
T PRK14191 136 FVPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASV-SVCHI 189 (285)
T ss_pred CCCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEE-EEEeC
Confidence 357898887665 4567899999999999999 89999999999999997 47764
No 167
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.33 E-value=0.036 Score=54.06 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4688999999999999999999999997555688753
No 168
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.32 E-value=0.094 Score=53.65 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=32.9
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|++++|+|+|.|.+|+.+|+.|.+.|..-+.+.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4788999999999999999999999998656788864
No 169
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.31 E-value=0.062 Score=49.87 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=25.1
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
+|+|+|.|.+|+.+|..+...|..|+ +.|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEE
Confidence 68999999999999999999999985 777
No 170
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.30 E-value=0.073 Score=50.44 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=51.3
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
++++|++|+|+|.|.||...++.|.+.|++|+-|+. + +. +++.+...+ +.+.-. ...+. ...+ .
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~--------~-~~-~~l~~l~~~-~~i~~~--~~~~~-~~~l--~ 69 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP--------E-LT-ENLVKLVEE-GKIRWK--QKEFE-PSDI--V 69 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC--------C-CC-HHHHHHHhC-CCEEEE--ecCCC-hhhc--C
Confidence 468999999999999999999999999999874442 1 22 334444332 222100 00111 1112 4
Q ss_pred CceEEecccccccccccc
Q psy8193 300 PCDILIPAAIEDQITINN 317 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~n 317 (428)
++|++|-|+-...+|..-
T Consensus 70 ~adlViaaT~d~elN~~i 87 (202)
T PRK06718 70 DAFLVIAATNDPRVNEQV 87 (202)
T ss_pred CceEEEEcCCCHHHHHHH
Confidence 688888887766666543
No 171
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.27 E-value=0.75 Score=47.99 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=26.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.||..+|..|.+.|.+|+ +.|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~-~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVT-GVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEE-EEE
Confidence 379999999999999999999999986 556
No 172
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.19 E-value=0.12 Score=49.39 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=57.0
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
++++|.|.||+|+.+|+.|...|..|+ |..++ +++++....+..+.. .+..+ +++ -...|||+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r---------~~~~~~a~a~~l~~~-----i~~~~-~~d-A~~~aDVV 64 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSR---------GPKALAAAAAALGPL-----ITGGS-NED-AAALADVV 64 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCC---------ChhHHHHHHHhhccc-----cccCC-hHH-HHhcCCEE
Confidence 578999999999999999999999986 55443 345555555443311 11112 111 12358999
Q ss_pred eccccccccc---ccccccccceEEEecCCC
Q psy8193 305 IPAAIEDQIT---INNANNVTAKIILEGANG 332 (428)
Q Consensus 305 iPaA~~~~It---~~na~~l~akiIvegAN~ 332 (428)
+.+-.-..+. .+-.+.+.-|||+...|.
T Consensus 65 vLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 65 VLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 8876533332 222333456999999884
No 173
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.18 E-value=0.37 Score=49.34 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=70.5
Q ss_pred ceEEEEeccHHHHHHHHHHHHC----CCEEEEEEcCCCeeeCCCCCCHHHH---HHHHHhcCCCcC---CC------Cce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKL---QKYVTFTRSIKD---FN------EGE 288 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~----GakvVaVsD~~G~i~n~~GlD~~~l---~~~~~~~g~l~~---~~------~~~ 288 (428)
.+|+|.|||.||+.+.|.|.+. ..++|+|-|. .|++.+ +++--.+|.+.. .. +++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 4799999999999999999874 5788988873 344443 333223332210 00 111
Q ss_pred ec--c---CCCc-cc-ccCceEEecccccccccccccccc---cce-EEEecCCC---CCC--HHH-HHHHHHCCCceec
Q psy8193 289 KI--N---DSKE-FW-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGANG---PTT--TEA-DDILRDKGIILAP 351 (428)
Q Consensus 289 ~i--~---~~~~-il-~~~~DIliPaA~~~~It~~na~~l---~ak-iIvegAN~---p~t--~ea-~~iL~~rGI~viP 351 (428)
.+ . ++++ -| +.++|+++.|+..- .+.+-++.. .|| +++.++-. +.+ |+. .+.|..+ .
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~~-~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~-----~ 146 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGVY-GSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE-----H 146 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccchh-hhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC-----C
Confidence 11 1 2332 23 47999999999543 555555543 344 44444411 111 111 1233221 2
Q ss_pred cccccccchhhhHHHHHh
Q psy8193 352 DVITNAGGVIVSYFEWVQ 369 (428)
Q Consensus 352 D~laNaGGVi~s~~E~~q 369 (428)
.+++|+-..+.+-.-.++
T Consensus 147 ~IISnasCTTn~Lap~lk 164 (336)
T PRK13535 147 RIVSNASCTTNCIIPVIK 164 (336)
T ss_pred CEEECCchHHHHHHHHHH
Confidence 366777777666554444
No 174
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=94.18 E-value=0.52 Score=48.13 Aligned_cols=31 Identities=32% Similarity=0.639 Sum_probs=27.2
Q ss_pred eEEEEeccHHHHHHHHHHHHC---CCEEEEEEcC
Q psy8193 226 KISIQGFGNVGSVAANLFFKA---GAKIVAIQDD 256 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~ 256 (428)
||+|-|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 689999999999999998765 5899999883
No 175
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.13 E-value=0.085 Score=53.86 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=29.3
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEE
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVA 252 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVa 252 (428)
.+++++|+|+|+|++|+..|+.|.+.|.+|+.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999999999999999998863
No 176
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.08 E-value=0.15 Score=50.96 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
..++|..|+...+ ++++.+++|++|+|+|= ..||+.++.+|.++|+.| .++.++- -|+.
T Consensus 137 ~~PcTp~aii~lL----~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATV-t~chs~T-------~dl~-------- 196 (282)
T PRK14180 137 LESCTPKGIMTML----REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATV-TTCHRFT-------TDLK-------- 196 (282)
T ss_pred cCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE-EEEcCCC-------CCHH--------
Confidence 3578988887655 45789999999999998 568999999999999998 4777421 0111
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
-+...+||+|-|.. .+.|+.+.+..
T Consensus 197 ------------------~~~k~ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 197 ------------------SHTTKADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred ------------------HHhhhcCEEEEccCCcCcCCHHHcCC
Confidence 12357888888886 77777765553
No 177
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.07 E-value=0.67 Score=47.38 Aligned_cols=129 Identities=25% Similarity=0.364 Sum_probs=70.7
Q ss_pred ceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHH---HHHHHHhcCCCcC---CC------Cceec-
Q psy8193 225 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPK---LQKYVTFTRSIKD---FN------EGEKI- 290 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~---l~~~~~~~g~l~~---~~------~~~~i- 290 (428)
.||+|-|||-+|+.+.|.+.+ ....||+|-|. .|++. |+++--.+|.+.+ .. +++.+
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 489999999999999998765 46999999884 34443 3333223333211 00 11111
Q ss_pred -c---CCCc-cc-ccCceEEecccccccccccccccc---cceEE-EecCCC---CC-CHHH-HHHHHHCCCceeccccc
Q psy8193 291 -N---DSKE-FW-SIPCDILIPAAIEDQITINNANNV---TAKII-LEGANG---PT-TTEA-DDILRDKGIILAPDVIT 355 (428)
Q Consensus 291 -~---~~~~-il-~~~~DIliPaA~~~~It~~na~~l---~akiI-vegAN~---p~-t~ea-~~iL~~rGI~viPD~la 355 (428)
. ++++ -| +.++|+.+.|+.. ..+.+.+... .||.| ..++.- |+ -++. .+.+..+ .+++
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~------~IIS 146 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQ------DIVS 146 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCCC------CEEE
Confidence 1 1322 23 4689999999853 4666666543 45544 444422 21 1221 1233222 3567
Q ss_pred cccchhhhHHHHHh
Q psy8193 356 NAGGVIVSYFEWVQ 369 (428)
Q Consensus 356 NaGGVi~s~~E~~q 369 (428)
|+-..+.+-.-.++
T Consensus 147 naSCtTn~Lapvlk 160 (331)
T PRK15425 147 NASCTTNCLAPLAK 160 (331)
T ss_pred CCCcHHHHHHHHHH
Confidence 77666665554444
No 178
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.02 E-value=0.15 Score=51.03 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.++|..||...+ ++++.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++- -| |
T Consensus 137 ~PcTp~avi~lL----~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T-------~n---l------- 194 (282)
T PRK14166 137 LPCTPLGVMKLL----KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT-------KD---L------- 194 (282)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CC---H-------
Confidence 578988887655 55789999999999998 5589999999999999984 887531 01 0
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
.-+...+||+|-|+. .+.|+++.+..
T Consensus 195 ----------------~~~~~~ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 195 ----------------SLYTRQADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred ----------------HHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 012357899998886 77788775553
No 179
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.01 E-value=0.38 Score=53.20 Aligned_cols=112 Identities=17% Similarity=0.333 Sum_probs=71.0
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc----c
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS----I 299 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~----~ 299 (428)
..+|+|.|||.+|+.+++.|.+.|.+++ +.| .|.+.+.+.++. |.-.-|-++ + ..++|. .
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID----------~d~~~v~~~~~~-g~~v~~GDa---t-~~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLD----------HDPDHIETLRKF-GMKVFYGDA---T-RMDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEE----------CCHHHHHHHHhc-CCeEEEEeC---C-CHHHHHhcCCC
Confidence 3689999999999999999999999986 558 688887776543 211111011 1 223332 3
Q ss_pred CceEEecccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHHCCCcee-ccccc
Q psy8193 300 PCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA-PDVIT 355 (428)
Q Consensus 300 ~~DIliPaA~~~~It~---~na~~l--~akiIvegAN~p~t~ea~~iL~~rGI~vi-PD~la 355 (428)
++|.+|-|.-....|. .++.+. +.++|+=+. +++..+.|++.|+-.+ |....
T Consensus 464 ~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v~~e~~e 521 (621)
T PRK03562 464 KAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPERETFE 521 (621)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEehhhHh
Confidence 7898888875544333 233333 446666443 3566778999999654 44443
No 180
>PRK14851 hypothetical protein; Provisional
Probab=93.98 E-value=0.039 Score=61.39 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHH-HhcCCCcCCCCceeccCCCccccc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV-TFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~-~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.|++.+|+|.|.|-||+.+++.|...|..=+.+.|.+- +++.-|-+.. .....+ +.++++... +.+.+.
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~-------ve~sNLNRQ~~~~~~dv-G~~Kv~v~~--~~l~~i 109 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ-------FEPVNVNRQFGARVPSF-GRPKLAVMK--EQALSI 109 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE-------ecccccccCcCcChhhC-CCHHHHHHH--HHHHHh
Confidence 36889999999999999999999999976666888421 2211111100 000000 111111111 223333
Q ss_pred CceEEecccccccccccccccc--cceEEEecCCCCCCH---HHHHHHHHCCCcee
Q psy8193 300 PCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTT---EADDILRDKGIILA 350 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~na~~l--~akiIvegAN~p~t~---ea~~iL~~rGI~vi 350 (428)
..++=|.+ ...-|+.+|+..+ ++.+|+++..++... ...+.-.++||.++
T Consensus 110 nP~~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i 164 (679)
T PRK14851 110 NPFLEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVI 164 (679)
T ss_pred CCCCeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 33444433 2345577777665 788888888876321 22344567788776
No 181
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.85 E-value=0.16 Score=48.60 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=41.2
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 279 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g 279 (428)
++++|++|+|+|-|.||..=+++|.+.|++|+-|++. + .+++..+.++.+
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~---------~-~~el~~~~~~~~ 57 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE---------F-EPELKALIEEGK 57 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC---------c-cHHHHHHHHhcC
Confidence 3689999999999999999999999999999988874 3 456666655543
No 182
>PRK11579 putative oxidoreductase; Provisional
Probab=93.80 E-value=0.26 Score=49.99 Aligned_cols=106 Identities=12% Similarity=0.295 Sum_probs=62.8
Q ss_pred ceEEEEeccHHHH-HHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc-cCc
Q psy8193 225 SKISIQGFGNVGS-VAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 301 (428)
Q Consensus 225 ~~vaIqGfGnVG~-~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~-~~~ 301 (428)
.||+|+|+|.+|. +.+..+.. .++++++|+|. |.++.. ++ |++...++|.++++. .++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~----------~~~~~~---~~------~~~~~~~~~~~ell~~~~v 65 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS----------DATKVK---AD------WPTVTVVSEPQHLFNDPNI 65 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC----------CHHHHH---hh------CCCCceeCCHHHHhcCCCC
Confidence 6899999999997 45666655 47999999994 444432 11 223333444567775 478
Q ss_pred eEEecccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHHCCCcee
Q psy8193 302 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILA 350 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l---~akiIvegAN~p~t~ea~~i---L~~rGI~vi 350 (428)
|+++-|+.. ..+.+.+... +.-++||=.=.....|++++ .+++|+.+.
T Consensus 66 D~V~I~tp~-~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 66 DLIVIPTPN-DTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CEEEEcCCc-HHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 988887643 3344433332 34566754222223455443 456677654
No 183
>PRK06153 hypothetical protein; Provisional
Probab=93.78 E-value=0.019 Score=59.64 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.|++.+|+|+|.|-+|+.++..|.+.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 468899999999999999999999999755567774
No 184
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.76 E-value=0.26 Score=44.22 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 201 KATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 201 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+.|..|+. ++++++|.+++|++|.|.|= ..||..++.+|.++|+.|. ++++
T Consensus 9 p~t~~a~~----~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~ 60 (140)
T cd05212 9 SPVAKAVK----ELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDW 60 (140)
T ss_pred ccHHHHHH----HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCC
Confidence 45666554 45566899999999999998 6789999999999999985 6775
No 185
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.76 E-value=0.12 Score=52.94 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|.+|+.+|+.|.+.|..-+.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4688999999999999999999999998555688864
No 186
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.70 E-value=0.091 Score=47.85 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEE
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaV 253 (428)
++++|++|+|+|.|+||...++.|.+.|++|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4789999999999999999999999999999755
No 187
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=93.68 E-value=0.63 Score=48.68 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=28.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHC---CCEEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~ 256 (428)
.+|+|.|||.+|+.+.|.|.+. ...|++|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 6999999999999999999876 4688988874
No 188
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.19 Score=50.55 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.++|..||.. ++++++.+++|++|+|+|- ..||+-++.+|.++|+.|. +++++. -|+.
T Consensus 140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T-------~~l~--------- 198 (294)
T PRK14187 140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT-------RDLA--------- 198 (294)
T ss_pred cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC-------CCHH---------
Confidence 4789888764 5566799999999999999 4579999999999999984 887531 0111
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
-+...+||+|-|.. .+.|+++.+..
T Consensus 199 -----------------~~~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 199 -----------------DYCSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred -----------------HHHhhCCEEEEccCCcCccCHHHcCC
Confidence 12347788888876 67777776553
No 189
>PRK08618 ornithine cyclodeaminase; Validated
Probab=93.65 E-value=0.63 Score=47.17 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=70.3
Q ss_pred CCceEEEEeccHHHHHHHHHHH-HCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCC-CceeccCCCcccccC
Q psy8193 223 INSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN-EGEKINDSKEFWSIP 300 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~-~~~~i~~~~~il~~~ 300 (428)
..++++|.|.|..|+..++.+. ..+.+-|.|.| .+.++..++.++... .++ ....+++.++.+ .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~----------r~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-~~ 192 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYS----------RTFEKAYAFAQEIQS--KFNTEIYVVNSADEAI-EE 192 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEEC----------CCHHHHHHHHHHHHH--hcCCcEEEeCCHHHHH-hc
Confidence 5679999999999998887765 46888888888 455665555442210 011 112233233444 48
Q ss_pred ceEEecccc--cccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceecccc
Q psy8193 301 CDILIPAAI--EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 354 (428)
Q Consensus 301 ~DIliPaA~--~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~l 354 (428)
+||++-|+. +-.++ +-+ +=.+-+++=|++.|--.|.+..+.++.-.++-|..
T Consensus 193 aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~~ 246 (325)
T PRK08618 193 ADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVESK 246 (325)
T ss_pred CCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 999999886 33333 222 22567888899988655544333344433444543
No 190
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.57 E-value=0.22 Score=41.86 Aligned_cols=103 Identities=18% Similarity=0.287 Sum_probs=61.3
Q ss_pred EEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc----ccCce
Q psy8193 227 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIPCD 302 (428)
Q Consensus 227 vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il----~~~~D 302 (428)
|+|.|+|.+|+.+++.|.+.+.+|+ +.| .|.+...+..++. +.-+ .+.. . ..+.| -.++|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid----------~d~~~~~~~~~~~--~~~i-~gd~-~-~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VID----------RDPERVEELREEG--VEVI-YGDA-T-DPEVLERAGIEKAD 64 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEE----------SSHHHHHHHHHTT--SEEE-ES-T-T-SHHHHHHTTGGCES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEE----------CCcHHHHHHHhcc--cccc-cccc-h-hhhHHhhcCccccC
Confidence 6899999999999999999776886 555 4777777766543 1100 0111 1 12222 14788
Q ss_pred EEecccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHHCCCce
Q psy8193 303 ILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 349 (428)
Q Consensus 303 IliPaA~~~~It~---~na~~l--~akiIvegAN~p~t~ea~~iL~~rGI~v 349 (428)
.++-++-....|- ..+.++ ..++|+..- +++..+.|++-|+-.
T Consensus 65 ~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 65 AVVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred EEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 8887775443333 333332 357777554 356667788878743
No 191
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.54 E-value=0.24 Score=51.07 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.+.|..|+. +++++++.+++|++|+|+|= .-||+-++.+|.++++.| .++.+
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATV-TicHs 263 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATV-SIVHS 263 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeE-EEeCC
Confidence 4689999875 45566799999999999998 557999999999999998 47764
No 192
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.36 E-value=0.17 Score=48.09 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=57.1
Q ss_pred ceEEEEe-ccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC-CCc--CCCC-ceeccCCCccccc
Q psy8193 225 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIK--DFNE-GEKINDSKEFWSI 299 (428)
Q Consensus 225 ~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g-~l~--~~~~-~~~i~~~~~il~~ 299 (428)
++|.|+| .|++|+.+++.|.+.|.+|+ +.+. +.+++.+..++.. .+. ++.. ....+ ..+.+ .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r----------~~~~~~~l~~~~~~~~~~~g~~~~~~~~~-~~ea~-~ 67 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSR----------DLEKAEEAAAKALEELGHGGSDIKVTGAD-NAEAA-K 67 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEc----------CHHHHHHHHHHHHhhccccCCCceEEEeC-hHHHH-h
Confidence 4799997 89999999999999999885 5552 3344443332210 010 1110 11112 22332 4
Q ss_pred CceEEecccccccccc---cccccccceEEEecCCCCC
Q psy8193 300 PCDILIPAAIEDQITI---NNANNVTAKIILEGANGPT 334 (428)
Q Consensus 300 ~~DIliPaA~~~~It~---~na~~l~akiIvegAN~p~ 334 (428)
++|++|-|.....+.. +-.+.++.++|+..+|+..
T Consensus 68 ~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 68 RADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 7899998876554432 1222344589999999864
No 193
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.33 E-value=0.5 Score=50.56 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.7
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+.+++|+|.|+|..|..++++|...|++|+ ++|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~ 43 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDD 43 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence 478899999999999999999999999985 6884
No 194
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.32 E-value=0.18 Score=48.46 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=32.4
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999999999999999999998666788753
No 195
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.32 E-value=0.2 Score=54.37 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=62.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc----ccC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIP 300 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il----~~~ 300 (428)
-+++|.|+|++|+.+++.|.+.|..++ +.| -|.+++.+.++. +.-.=+ +.. + .++.| -.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId----------~d~~~~~~~~~~-g~~~i~--GD~-~-~~~~L~~a~i~~ 481 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIE----------TSRTRVDELRER-GIRAVL--GNA-A-NEEIMQLAHLDC 481 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHHC-CCeEEE--cCC-C-CHHHHHhcCccc
Confidence 468999999999999999999999886 666 477777766543 210000 011 1 22233 137
Q ss_pred ceEEecccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHHCCCce
Q psy8193 301 CDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 349 (428)
Q Consensus 301 ~DIliPaA~~~~It~---~na~~l--~akiIvegAN~p~t~ea~~iL~~rGI~v 349 (428)
||.++-+...+..+. ..+.+. .+++|+-.. +++..+.|++-|+-+
T Consensus 482 a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~ 531 (558)
T PRK10669 482 ARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQ 531 (558)
T ss_pred cCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCE
Confidence 887766554332211 111111 456776542 467778888888644
No 196
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.29 E-value=0.9 Score=48.79 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=27.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|++|+..|..|...|..|+ +.|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 489999999999999999999999885 777
No 197
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.28 E-value=0.26 Score=47.96 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=42.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC----EEEEEE-cCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA----KIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga----kvVaVs-D~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
++|.++|+|++|+.+++.|.+.|. +|+ ++ |+ +.++...+.+ .| ....+++.++. .
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r----------~~~~~~~~~~-~g-------~~~~~~~~e~~-~ 60 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS----------NPARRDVFQS-LG-------VKTAASNTEVV-K 60 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC----------CHHHHHHHHH-cC-------CEEeCChHHHH-h
Confidence 479999999999999999999987 664 44 52 3444443332 22 22323233443 4
Q ss_pred CceEEecccc
Q psy8193 300 PCDILIPAAI 309 (428)
Q Consensus 300 ~~DIliPaA~ 309 (428)
+|||+|-|..
T Consensus 61 ~aDvVil~v~ 70 (266)
T PLN02688 61 SSDVIILAVK 70 (266)
T ss_pred cCCEEEEEEC
Confidence 7899998874
No 198
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.27 E-value=0.53 Score=48.26 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
.|.+|+|.|+|-+|..++++....|++|++++-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~ 198 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR 198 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 589999999999999999999999999997764
No 199
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.24 E-value=0.32 Score=48.20 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=27.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEe
Confidence 579999999999999999999999985 667
No 200
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.23 E-value=0.27 Score=49.10 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=45.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.++|..||.. ++++++.+++|++|+|+|-+ .||+-++.+|.++|+.|. ++.+
T Consensus 136 ~~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs 189 (281)
T PRK14183 136 FVPCTPLGVME----LLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHI 189 (281)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 35789888754 55677899999999999998 789999999999999885 8875
No 201
>PLN02256 arogenate dehydrogenase
Probab=93.15 E-value=0.23 Score=50.02 Aligned_cols=34 Identities=38% Similarity=0.589 Sum_probs=29.6
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 254 (428)
+.+.++|.|+|+|++|+.+++.|.+.|.+|+++.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 4578899999999999999999999998887443
No 202
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.15 Score=49.15 Aligned_cols=110 Identities=20% Similarity=0.337 Sum_probs=66.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH-hcCCCcCCCCceec--c-CCCccc---
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRSIKDFNEGEKI--N-DSKEFW--- 297 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~-~~g~l~~~~~~~~i--~-~~~~il--- 297 (428)
++++|.|.|.||+.+|+.|.+.|..|+.| | -|.+.+.++.. +.. ...+ + +..+.|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d----------~d~~~~~~~~~~~~~-------~~~v~gd~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-D----------RDEERVEEFLADELD-------THVVIGDATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-E----------cCHHHHHHHhhhhcc-------eEEEEecCCCHHHHHhc
Confidence 58999999999999999999999999754 4 36667666433 221 1111 1 022233
Q ss_pred -ccCceEEeccccccccccc---cccc-ccceEEEecCCCCCCHHHHHHHHHCC--Cceeccccc
Q psy8193 298 -SIPCDILIPAAIEDQITIN---NANN-VTAKIILEGANGPTTTEADDILRDKG--IILAPDVIT 355 (428)
Q Consensus 298 -~~~~DIliPaA~~~~It~~---na~~-l~akiIvegAN~p~t~ea~~iL~~rG--I~viPD~la 355 (428)
-.++|+++-++..+.+|.- .+.+ +..+-|+-=++ +++..++|.+-| ..+.|...+
T Consensus 63 gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 63 GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 2489999999876655432 2222 32322222222 455667888878 344555443
No 203
>PRK14852 hypothetical protein; Provisional
Probab=93.09 E-value=0.073 Score=61.09 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHH-HhcCCCcCCCCceeccCCCccccc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV-TFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~-~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
.|+..+|+|.|.|-||+.+++.|...|..-+.+.|-+- ++..-|-+.. .....+ +-++++.. .+.+.+.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kaeva--a~~l~~I 398 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLDVM--TERALSV 398 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHHHH--HHHHHHH
Confidence 48899999999999999999999999986667888421 2211111100 000000 11111111 1123334
Q ss_pred CceEEecccccccccccccccc--cceEEEecCCCCCCHH---HHHHHHHCCCcee
Q psy8193 300 PCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTE---ADDILRDKGIILA 350 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~na~~l--~akiIvegAN~p~t~e---a~~iL~~rGI~vi 350 (428)
..++=|.+--+ -|+++|++.+ ++-+|+++..++.+.. ......++||.++
T Consensus 399 NP~v~I~~~~~-~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I 453 (989)
T PRK14852 399 NPFLDIRSFPE-GVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVI 453 (989)
T ss_pred CCCCeEEEEec-CCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEE
Confidence 44444443322 3577777776 7888998888765422 2233467888776
No 204
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.04 E-value=0.099 Score=46.13 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.8
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+|+|.|.|.+|+.+++.|...|..=+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999854467774
No 205
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=93.01 E-value=1 Score=45.78 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=72.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
.-+++.|+|.|+.|++-++.|.. ...+-|.|.| .+.++..++.++.... +. .....++.++.+ .+|
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~----------r~~~~~~~~~~~~~~~-g~-~v~~~~~~~eav-~~a 193 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC----------RTPSTREKFALRASDY-EV-PVRAATDPREAV-EGC 193 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHhh-CC-cEEEeCCHHHHh-ccC
Confidence 45789999999999997777755 3345556777 5666666655432211 11 123333345555 589
Q ss_pred eEEeccccc--ccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccccc
Q psy8193 302 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 355 (428)
Q Consensus 302 DIliPaA~~--~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~la 355 (428)
||++-|+.. -.+..+.. +=.+-+.+=|++.|-..|.+..+.++.- ++.|-..
T Consensus 194 DiVitaT~s~~P~~~~~~l-~~g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~~~ 247 (325)
T TIGR02371 194 DILVTTTPSRKPVVKADWV-SEGTHINAIGADAPGKQELDPEILKNAK-IFVDDLE 247 (325)
T ss_pred CEEEEecCCCCcEecHHHc-CCCCEEEecCCCCcccccCCHHHHhcCc-EEECCHH
Confidence 999988853 33444322 2256788889999976666544444543 4456443
No 206
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.01 E-value=0.31 Score=50.01 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
-.+.|..||...+ ++++.+++|++++|+|=+ .||+-++.+|.++++.| .++.++- -|+
T Consensus 193 ~~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATV-TicHs~T-------~nl--------- 251 (345)
T PLN02897 193 FVSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATV-STVHAFT-------KDP--------- 251 (345)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEE-EEEcCCC-------CCH---------
Confidence 4688998887665 567999999999999985 57999999999999998 4776421 011
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
+-+...+||+|-|+. .+.|+.+.+..
T Consensus 252 -----------------~~~~~~ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 252 -----------------EQITRKADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred -----------------HHHHhhCCEEEEccCCcCccCHHHcCC
Confidence 112347888888876 67777765543
No 207
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.00 E-value=0.3 Score=49.18 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHC----CCEEEEEEcCCCeeeCCCCCCHHHHHHH
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKY 274 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----GakvVaVsD~~G~i~n~~GlD~~~l~~~ 274 (428)
.++|..|+... +++++.+++|++|+|+|= ..||+-++.+|.++ ++.| .++.++- -|+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTV-tvchs~T-------~~l------ 198 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATV-TVCHSRT-------DDL------ 198 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEE-EEeCCCC-------CCH------
Confidence 47888887665 556789999999999998 55799999999988 7877 4777531 011
Q ss_pred HHhcCCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEecC
Q psy8193 275 VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 330 (428)
Q Consensus 275 ~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIvegA 330 (428)
.-....+||+|-|+. .+.|+.+.+..= .+|++..
T Consensus 199 --------------------~~~~~~ADIvIsAvGkp~~i~~~~ik~g--aiVIDvG 233 (297)
T PRK14167 199 --------------------AAKTRRADIVVAAAGVPELIDGSMLSEG--ATVIDVG 233 (297)
T ss_pred --------------------HHHHhhCCEEEEccCCcCccCHHHcCCC--CEEEEcc
Confidence 112357888888876 777777655532 2444433
No 208
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.93 E-value=0.26 Score=44.97 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=27.8
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+...+|+|.|.|+||..+++.+...|++++ +.|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d 50 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPD 50 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEE
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEE-ecc
Confidence 3567899999999999999999999999987 556
No 209
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=92.89 E-value=0.53 Score=46.96 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCceEEEEeccHHH-HHHHHHHHHCC--CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 223 INSKISIQGFGNVG-SVAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 223 ~g~~vaIqGfGnVG-~~~a~~L~~~G--akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
+-.||+|+|+|+.+ ...+..+.+.+ +.+++|+| .|.+.+.+..++.+-- ..++|.++++..
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d----------~~~~~a~~~a~~~~~~------~~~~~~~~ll~~ 65 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD----------RDPERAEAFAEEFGIA------KAYTDLEELLAD 65 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec----------CCHHHHHHHHHHcCCC------cccCCHHHHhcC
Confidence 44789999999776 45677777765 59999999 7888888888876522 233335667765
Q ss_pred C-ceEEecccccccccccccccc---cceEEEecCCCCCCHHHHH---HHHHCCCce
Q psy8193 300 P-CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADD---ILRDKGIIL 349 (428)
Q Consensus 300 ~-~DIliPaA~~~~It~~na~~l---~akiIvegAN~p~t~ea~~---iL~~rGI~v 349 (428)
+ .|+++=|+ ++..+.+-+.+- ..-++||=.=..+..|+++ +-+++|+.+
T Consensus 66 ~~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 66 PDIDAVYIAT-PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred CCCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 4 78777766 333444433221 4567777533333345553 334445544
No 210
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=1 Score=47.74 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=34.5
Q ss_pred HHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 216 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 216 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+.+.++++++|+|.|.|.+|..+|+.|.+.|.+|+ ++|.
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~ 47 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDD 47 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 345667889999999999999999999999999975 6774
No 211
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.84 E-value=0.35 Score=47.90 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|+.+|..|.+.|..|+ +.|
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEe
Confidence 479999999999999999999999985 667
No 212
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.80 E-value=0.25 Score=47.16 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=32.2
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|.+|+.+|+.|.+.|..=+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998655688754
No 213
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=92.78 E-value=1.1 Score=45.83 Aligned_cols=96 Identities=23% Similarity=0.358 Sum_probs=56.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHC---CCEEEEEEcCCCeeeCCCCCCHHHH---HHHHHhcCCCcC---CC------Ccee
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKL---QKYVTFTRSIKD---FN------EGEK 289 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~~G~i~n~~GlD~~~l---~~~~~~~g~l~~---~~------~~~~ 289 (428)
.||+|-|||-+|+.+.|.+.+. ..+||+|-|. .|++.+ +++--.+|.+.. +. +++.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 4899999999999999987654 5889999883 355443 333223343211 00 1111
Q ss_pred c--c---CCCcc-c-ccCceEEecccccccccccccccc---cceEEEecC
Q psy8193 290 I--N---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 330 (428)
Q Consensus 290 i--~---~~~~i-l-~~~~DIliPaA~~~~It~~na~~l---~akiIvegA 330 (428)
+ . +++++ | +.++|+.+.|+.. ..+.+.+... .||.|.=.|
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~-f~s~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGV-FVTKEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccch-hhhHHHHHHHhhCCcEEEEeCC
Confidence 1 0 12332 3 4689999999853 3555555443 466665554
No 214
>PLN02306 hydroxypyruvate reductase
Probab=92.75 E-value=0.16 Score=53.01 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHHH-HCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC-C---CcCCC-CceeccC
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-S---IKDFN-EGEKIND 292 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g-~---l~~~~-~~~~i~~ 292 (428)
|.++.|+||.|+|+|++|+.+|+.|. ..|.+|+ ..|... + ..+....+..+ . ....+ ..+...+
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~-~~d~~~--------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ--------S-TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCC--------c-hhhhhhhhhhcccccccccccccccccCC
Confidence 34689999999999999999999985 7899996 445421 0 11111000110 0 00000 0111111
Q ss_pred CCcccccCceEEecccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy8193 293 SKEFWSIPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 347 (428)
Q Consensus 293 ~~~il~~~~DIliPaA~-----~~~It~~na~~l~-akiIvegAN~p~-t~ea-~~iL~~rGI 347 (428)
.++++ ..|||++-+.. .+.|+.+....++ -.+++.-|=+++ ..+| .+.|++.-|
T Consensus 230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i 291 (386)
T PLN02306 230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM 291 (386)
T ss_pred HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence 34555 36898888654 3455666666664 568888888886 4443 577877655
No 215
>PRK04148 hypothetical protein; Provisional
Probab=92.75 E-value=0.44 Score=42.55 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=36.4
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
.++++|+++|.| -|..+|+.|.+.|..|+ ..| ++..++...++.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Vi-aID----------i~~~aV~~a~~~ 58 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVI-VID----------INEKAVEKAKKL 58 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHh
Confidence 367899999999 89899999999999997 667 777777666553
No 216
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.69 E-value=0.85 Score=46.77 Aligned_cols=131 Identities=19% Similarity=0.303 Sum_probs=73.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHH---HHHHhcCCCcC---CC------Cceec-
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQ---KYVTFTRSIKD---FN------EGEKI- 290 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~---~~~~~~g~l~~---~~------~~~~i- 290 (428)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.. .|++.+. ++--.+|.+.+ +. +++.+
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~--------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF--------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC--------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 5899999999999999987654 68999998732 3544433 22223343211 11 11111
Q ss_pred ----cCCCcc-c-ccCceEEecccccccccccccccc---cceEEEecCCC----CC-CHHH-HHHHHHCCCceeccccc
Q psy8193 291 ----NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGANG----PT-TTEA-DDILRDKGIILAPDVIT 355 (428)
Q Consensus 291 ----~~~~~i-l-~~~~DIliPaA~~~~It~~na~~l---~akiIvegAN~----p~-t~ea-~~iL~~rGI~viPD~la 355 (428)
.++.++ | +.++|+.+.|+.. ..+.+.++.. .||.|.-.|.. |+ =++. .+.|..+ ..+++
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~-----~~IIS 148 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKS-----QRIVS 148 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCC-----CCEEE
Confidence 123332 3 5789999999954 4667666644 57766666521 11 0111 1233221 23567
Q ss_pred cccchhhhHHHHHh
Q psy8193 356 NAGGVIVSYFEWVQ 369 (428)
Q Consensus 356 NaGGVi~s~~E~~q 369 (428)
|+-..+.+..-.++
T Consensus 149 nasCTTn~Lap~lk 162 (337)
T PTZ00023 149 NASCTTNCLAPLAK 162 (337)
T ss_pred CCccHHHHHHHHHH
Confidence 77776665544443
No 217
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=92.68 E-value=0.31 Score=49.62 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=30.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCC
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDK 257 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~ 257 (428)
..||+|.|+|++|+..++.+.+. +..+|+|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999998764 89999999964
No 218
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.67 E-value=0.37 Score=48.22 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
-.++|.+|+... +++++.+++|++|+|+|- ..||+-++.+|.++|+.| .+++++. -|++
T Consensus 138 ~~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atV-t~chs~T-------~~l~-------- 197 (284)
T PRK14177 138 YLPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATV-TLCHSKT-------QNLP-------- 197 (284)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE-EEeCCCC-------CCHH--------
Confidence 357899888774 456799999999999998 568999999999999998 4887531 0111
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
-+...+||+|-|.. .+.|+.+.+..
T Consensus 198 ------------------~~~~~ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 198 ------------------SIVRQADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred ------------------HHHhhCCEEEEeCCCcCccCHHHcCC
Confidence 12347888888776 67777765553
No 219
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.61 E-value=0.43 Score=49.84 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=69.8
Q ss_pred HHHHHHHhCC-CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCcee
Q psy8193 211 GSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 289 (428)
Q Consensus 211 ~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~ 289 (428)
++.+.+.++. ++..++++|.|+|.+|+.+++.|.+.|..++ +.| -|.+.+.++.++...+.-+. +..
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid----------~~~~~~~~~~~~~~~~~~i~-gd~ 284 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIE----------RDPERAEELAEELPNTLVLH-GDG 284 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHHCCCCeEEE-CCC
Confidence 3444444443 4667899999999999999999999999986 556 46777766665431111000 011
Q ss_pred ccCCCcc---cccCceEEeccccc---cccccccccccc-ceEEEecCCCCCCHHHHHHHHHCCCc
Q psy8193 290 INDSKEF---WSIPCDILIPAAIE---DQITINNANNVT-AKIILEGANGPTTTEADDILRDKGII 348 (428)
Q Consensus 290 i~~~~~i---l~~~~DIliPaA~~---~~It~~na~~l~-akiIvegAN~p~t~ea~~iL~~rGI~ 348 (428)
.+ .+.+ --.++|.++-++-. |.+....+..+. .++|+... +++..++|+..|+-
T Consensus 285 ~~-~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~ 345 (453)
T PRK09496 285 TD-QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID 345 (453)
T ss_pred CC-HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence 11 1112 12468888866543 222222333332 35666543 34455678888874
No 220
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.55 E-value=0.3 Score=46.22 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|-+|+.+|+.|.+.|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4788999999999999999999999998544588854
No 221
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.53 E-value=0.16 Score=48.19 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=31.3
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 254 (428)
++++|++|+|+|.|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 36899999999999999999999999999987444
No 222
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.53 E-value=0.37 Score=45.71 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=83.1
Q ss_pred CChhHHHHHHHHHHHH-----HHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHH
Q psy8193 200 QKATGRGVFIIGSKIA-----SKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQK 273 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~-----~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~ 273 (428)
.+.|.+||...++..= ...|.+++|++|+|+|=+ .||+-+|.+|.++|+.|. ++|++|..+-..+-. .+
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~~----~~ 107 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGES----IR 107 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccccccccc----cc
Confidence 5789999987776430 012458999999999995 579999999999999985 999877655333221 01
Q ss_pred HHHhcCCCcCCCCceeccCCC-ccc--ccCceEEecccc-ccc-ccccccccccceEEEe-cCCCCCCHHHHHHHHHCCC
Q psy8193 274 YVTFTRSIKDFNEGEKINDSK-EFW--SIPCDILIPAAI-EDQ-ITINNANNVTAKIILE-GANGPTTTEADDILRDKGI 347 (428)
Q Consensus 274 ~~~~~g~l~~~~~~~~i~~~~-~il--~~~~DIliPaA~-~~~-It~~na~~l~akiIve-gAN~p~t~ea~~iL~~rGI 347 (428)
+. .+...+.+ .+. ...+||+|-|.. .+. |+.+.+..= | +|++ |-|.-+. +-..++-=
T Consensus 108 hs-----------~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~G-a-vVIDVGi~~dvd----~~v~~~as 170 (197)
T cd01079 108 HE-----------KHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDG-A-ICINFASIKNFE----PSVKEKAS 170 (197)
T ss_pred cc-----------cccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCC-c-EEEEcCCCcCcc----HhHHhhcC
Confidence 10 00001000 122 358899999886 666 777755532 2 4443 3332222 22223322
Q ss_pred ceeccccccccchhhhHH
Q psy8193 348 ILAPDVITNAGGVIVSYF 365 (428)
Q Consensus 348 ~viPD~laNaGGVi~s~~ 365 (428)
.+.|= .|-++++.+
T Consensus 171 ~iTPv----VGpvTva~L 184 (197)
T cd01079 171 IYVPS----IGKVTIAML 184 (197)
T ss_pred EeCCC----cCHHHHHHH
Confidence 46662 577776543
No 223
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=92.46 E-value=0.53 Score=46.68 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=72.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC---EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
+++.++|+||+|+.++.-|.+.|. .-|-|++. +.+++.++.++.+.. ..+ +.+-+..++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------~~e~~~~l~~~~g~~-------~~~-~~~~~~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------SEEKRAALAAEYGVV-------TTT-DNQEAVEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------CHHHHHHHHHHcCCc-------ccC-cHHHHHhhC
Confidence 579999999999999999999992 33458884 455555555554322 122 334455679
Q ss_pred eEEecccccccccccccccc----cceEEEecCCCCCCHHHHHHHH-HCCCceeccccccccch
Q psy8193 302 DILIPAAIEDQITINNANNV----TAKIILEGANGPTTTEADDILR-DKGIILAPDVITNAGGV 360 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l----~akiIvegAN~p~t~ea~~iL~-~rGI~viPD~laNaGGV 360 (428)
|+++.|--+..+ ++...++ +-|+|+.-|=+-....-.+.|- .+=+.++|..-+-.|--
T Consensus 64 dvv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g 126 (266)
T COG0345 64 DVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG 126 (266)
T ss_pred CEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCc
Confidence 999988765433 2223333 4566666555544444455553 34457888877665533
No 224
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.44 E-value=0.32 Score=47.95 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=27.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEe
Confidence 479999999999999999999999886 567
No 225
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.41 E-value=0.45 Score=49.79 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=31.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+++++++.|.|.|..|..+|++|++.|++|+ ++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcC
Confidence 3678999999999999999999999999985 7784
No 226
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.32 E-value=0.81 Score=46.79 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=46.9
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC-cCCCCceeccCCCccc--c--cC
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI-KDFNEGEKINDSKEFW--S--IP 300 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l-~~~~~~~~i~~~~~il--~--~~ 300 (428)
+|+|.|.|++|.-++..+...|+..|-++| ++.++|...++..+.- ...+..+. . ...++ + ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d----------~~~~Rl~~A~~~~g~~~~~~~~~~~-~-~~~~~~~t~g~g 238 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD----------RSPERLELAKEAGGADVVVNPSEDD-A-GAEILELTGGRG 238 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC----------CCHHHHHHHHHhCCCeEeecCcccc-H-HHHHHHHhCCCC
Confidence 999999999999999999899987776888 6777776655533311 11111100 0 01122 1 35
Q ss_pred ceEEecccc
Q psy8193 301 CDILIPAAI 309 (428)
Q Consensus 301 ~DIliPaA~ 309 (428)
+|+.++|+.
T Consensus 239 ~D~vie~~G 247 (350)
T COG1063 239 ADVVIEAVG 247 (350)
T ss_pred CCEEEECCC
Confidence 899999986
No 227
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.32 E-value=0.33 Score=45.77 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHH--HHHCCCEEEEEEc
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANL--FFKAGAKIVAIQD 255 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~--L~~~GakvVaVsD 255 (428)
||=|-+-.++..+.+|.+ +-.+++|+|.||.|++++.+ ..+.|.+|+++.|
T Consensus 65 GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FD 117 (211)
T COG2344 65 GYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFD 117 (211)
T ss_pred CccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEec
Confidence 666777777777777876 66789999999999999964 3467999999999
No 228
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.31 E-value=0.21 Score=50.87 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=30.4
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaV 253 (428)
.|+|++|.|+|+|++|+..|+.|...|.+|+..
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 479999999999999999999999999999643
No 229
>KOG2380|consensus
Probab=92.28 E-value=0.25 Score=50.53 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=28.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.-.+|+|+||||.|+..|+.|.+.|..++ ++|+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsR 83 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSR 83 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCc
Confidence 45789999999999999999999999986 5554
No 230
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=92.24 E-value=1.1 Score=45.97 Aligned_cols=96 Identities=31% Similarity=0.428 Sum_probs=57.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHH---HHHHhcCCCcC---CC------Cceec-
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQ---KYVTFTRSIKD---FN------EGEKI- 290 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~---~~~~~~g~l~~---~~------~~~~i- 290 (428)
.||+|-|||-+|+.+.|.+.+. ...||+|-|. .|++.+. ++--.+|.+.+ +. +.+.+
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 5899999999999999987654 5899999873 3554433 33223333210 00 11111
Q ss_pred -c---CCCcc-c-ccCceEEecccccccccccccccc---cceEEEecC
Q psy8193 291 -N---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 330 (428)
Q Consensus 291 -~---~~~~i-l-~~~~DIliPaA~~~~It~~na~~l---~akiIvegA 330 (428)
. +++++ | +.++|+.+.|+.. ..+.+.+... .||.|.=.|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcCCeEEEeCC
Confidence 1 23332 3 4689999999853 3666655543 566665543
No 231
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=92.24 E-value=0.21 Score=46.00 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 258 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 258 (428)
|++++|+|+|||+-|..-|..|.+.|..|+ |....+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~ 37 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREG 37 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TT
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCC
Confidence 579999999999999999999999999986 666544
No 232
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.19 E-value=0.45 Score=51.30 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=49.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHH----------HHhcCCCcCCC------Cce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKY----------VTFTRSIKDFN------EGE 288 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~----------~~~~g~l~~~~------~~~ 288 (428)
++|+|+|.|.+|+.+|..|...|..|+ +.| .+.+++.+. ..+.|.+..-. ..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D----------~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 76 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYD----------ARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLR 76 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 579999999999999999999999985 778 556655543 12233322110 012
Q ss_pred eccCCCcccccCceEEecccccccc
Q psy8193 289 KINDSKEFWSIPCDILIPAAIEDQI 313 (428)
Q Consensus 289 ~i~~~~~il~~~~DIliPaA~~~~I 313 (428)
..++.++ + .+||++|+|..++.-
T Consensus 77 ~~~~~~~-~-~~aDlViEav~E~~~ 99 (507)
T PRK08268 77 PVEALAD-L-ADCDLVVEAIVERLD 99 (507)
T ss_pred EeCCHHH-h-CCCCEEEEcCcccHH
Confidence 2222333 3 389999999766544
No 233
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.18 E-value=0.25 Score=42.57 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=42.6
Q ss_pred eEEEEe-ccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceE
Q psy8193 226 KISIQG-FGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 303 (428)
Q Consensus 226 ~vaIqG-fGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DI 303 (428)
||+|.| .|.||+.++++|.++ ...++.+..++. ..|..+...... ..++......+...+.+ .++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEVFPH------PKGFEDLSVEDADPEEL-SDVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHTTGG------GTTTEEEBEEETSGHHH-TTESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehhccc------cccccceeEeecchhHh-hcCCE
Confidence 689999 899999999999884 567777777542 245554443321 11111111111011122 68899
Q ss_pred Eecccc
Q psy8193 304 LIPAAI 309 (428)
Q Consensus 304 liPaA~ 309 (428)
++-|..
T Consensus 70 vf~a~~ 75 (121)
T PF01118_consen 70 VFLALP 75 (121)
T ss_dssp EEE-SC
T ss_pred EEecCc
Confidence 998863
No 234
>PRK07877 hypothetical protein; Provisional
Probab=92.15 E-value=0.075 Score=59.56 Aligned_cols=126 Identities=13% Similarity=0.238 Sum_probs=69.4
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
.|+..+|+|.|.| ||+++|..|...|. ++ .+.|.+ =+++.-|-+..-....+ +-++++.. .+.+..
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l-~lvD~D-------~ve~sNLnRq~~~~~di-G~~Kv~~a--~~~l~~ 171 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGEL-RLADFD-------TLELSNLNRVPAGVFDL-GVNKAVVA--ARRIAE 171 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeE-EEEcCC-------EEcccccccccCChhhc-ccHHHHHH--HHHHHH
Confidence 4788999999999 99999999999994 55 577742 12222222210000000 11111111 112333
Q ss_pred cCceEEecccccccccccccccc--cceEEEecCCCCCCH-HHHHHHHHCCCceeccccccccchh
Q psy8193 299 IPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTT-EADDILRDKGIILAPDVITNAGGVI 361 (428)
Q Consensus 299 ~~~DIliPaA~~~~It~~na~~l--~akiIvegAN~p~t~-ea~~iL~~rGI~viPD~laNaGGVi 361 (428)
.+.+|=|.+ ...-||++|++.+ ++.+|+++.-+.-+. ...+.-.++||.+| +-+.++|.+
T Consensus 172 inp~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i--~~~~~~g~~ 234 (722)
T PRK07877 172 LDPYLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVL--MATSDRGLL 234 (722)
T ss_pred HCCCCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE--EEcCCCCCc
Confidence 333443432 2444667777765 677888877765332 22345567788887 334445554
No 235
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.10 E-value=0.35 Score=49.80 Aligned_cols=37 Identities=30% Similarity=0.496 Sum_probs=32.3
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3688999999999999999999999997666788754
No 236
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.08 E-value=0.39 Score=47.78 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=27.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+|+|+|.|.+|+..|..|...|..|+ +.|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d 35 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFE 35 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEE
Confidence 389999999999999999999999985 777
No 237
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=91.98 E-value=1.9 Score=45.98 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc--CceEEeccccccc
Q psy8193 235 VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCDILIPAAIEDQ 312 (428)
Q Consensus 235 VG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~--~~DIliPaA~~~~ 312 (428)
+|+++|+.|.+.|.+| .|.| .+.++..++.+..+. + .+....++++++.+. .||+++-|-..+.
T Consensus 1 MG~~mA~nL~~~G~~V-~v~n----------rt~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~ 66 (459)
T PRK09287 1 MGKNLALNIASHGYTV-AVYN----------RTPEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGA 66 (459)
T ss_pred CcHHHHHHHHhCCCeE-EEEC----------CCHHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCch
Confidence 4889999999999998 4788 567777776653221 0 123333334555432 4788877755443
Q ss_pred ccccc----cccc-cceEEEecCCCCC--CHHHHHHHHHCCCceeccccccccchh-------------hhHHHHHh---
Q psy8193 313 ITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI-------------VSYFEWVQ--- 369 (428)
Q Consensus 313 It~~n----a~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~viPD~laNaGGVi-------------~s~~E~~q--- 369 (428)
...+. ++.+ .-++|+++.|.-. |.+..+.|+++||.++--.+. ||.. -..|+.++
T Consensus 67 ~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVS--GG~~gA~~G~siM~GG~~~a~~~~~piL 144 (459)
T PRK09287 67 PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVS--GGEEGALHGPSIMPGGQKEAYELVAPIL 144 (459)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCC--CCHHHHhcCCEEEEeCCHHHHHHHHHHH
Confidence 33332 2333 3579999998654 556667899999998754444 4432 01122222
Q ss_pred -hcccC--------CC--------CHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q psy8193 370 -NLSNL--------LW--------TEQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 414 (428)
Q Consensus 370 -n~~~~--------~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 414 (428)
.+... .| -..-|+..++..+-..+.+.+..++ +.++++.+.+.++
T Consensus 145 ~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11100 11 1345677788888889999999999 4899988776655
No 238
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.94 E-value=0.37 Score=48.13 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=65.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHh
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~ 277 (428)
-.+.|..||... +++++.+++|++|+|.|.+ .||+.+|.+|...|+.|. +++++- ..|.+
T Consensus 131 ~~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~t----------~~L~~---- 191 (279)
T PRK14178 131 FAPCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSKT----------ENLKA---- 191 (279)
T ss_pred CCCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecCh----------hHHHH----
Confidence 357898888765 4567899999999999998 899999999999999884 776431 11111
Q ss_pred cCCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEecC
Q psy8193 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 330 (428)
Q Consensus 278 ~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIvegA 330 (428)
...++||+|-|.. .+.++++.+.. . .+|++-+
T Consensus 192 -------------------~~~~ADIvI~Avgk~~lv~~~~vk~-G-avVIDVg 224 (279)
T PRK14178 192 -------------------ELRQADILVSAAGKAGFITPDMVKP-G-ATVIDVG 224 (279)
T ss_pred -------------------HHhhCCEEEECCCcccccCHHHcCC-C-cEEEEee
Confidence 1137888888886 67777766521 2 3555555
No 239
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.89 E-value=0.78 Score=48.05 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
++++++|+|.|.|.+|..+|+.|.+.|++|+ ++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4688999999999999999999999999985 6674
No 240
>KOG0069|consensus
Probab=91.86 E-value=0.57 Score=47.96 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=60.7
Q ss_pred hCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc
Q psy8193 218 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 297 (428)
Q Consensus 218 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il 297 (428)
+|.++.|+||.|.|+|.+|+.+|+.|...|..|. -+... ..-.+...++- ++.++ .++.+
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r~-------~~~~~~~~~~~-----------~~~~d-~~~~~ 215 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSRT-------QLPPEEAYEYY-----------AEFVD-IEELL 215 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhccceee-eeccc-------CCchhhHHHhc-----------ccccC-HHHHH
Confidence 3568999999999999999999999999994443 33321 12222222221 11222 33333
Q ss_pred ccCceEEecccccc-----cccccccccc-cceEEEecCCCCC-CHHH-HHHHHH
Q psy8193 298 SIPCDILIPAAIED-----QITINNANNV-TAKIILEGANGPT-TTEA-DDILRD 344 (428)
Q Consensus 298 ~~~~DIliPaA~~~-----~It~~na~~l-~akiIvegAN~p~-t~ea-~~iL~~ 344 (428)
..+|+++-|-.-+ .||.+-..+. +.-+||..|=+++ ..++ -+.|++
T Consensus 216 -~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 216 -ANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred -hhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 4677777765433 3333333333 3447777777775 3333 344544
No 241
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.85 E-value=0.31 Score=50.43 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.+++++|+|.|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4789999999999999999999999998656688854
No 242
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.70 E-value=0.4 Score=45.88 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCC---EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccccc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 299 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~ 299 (428)
+.++|.|+|.|++|+.+++.|.+.|. +.+.+.+. -+.+.+.++.++.+ ....++.++++ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~~~-~ 65 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR---------SNVEKLDQLQARYN-------VSTTTDWKQHV-T 65 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC---------CCHHHHHHHHHHcC-------cEEeCChHHHH-h
Confidence 46789999999999999999988762 31223432 13455555554432 22223244454 4
Q ss_pred CceEEeccccccccccccccc----ccceEEEecCCCCCCHHHHHHH
Q psy8193 300 PCDILIPAAIEDQITINNANN----VTAKIILEGANGPTTTEADDIL 342 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~na~~----l~akiIvegAN~p~t~ea~~iL 342 (428)
++|+++-|.....+ .+.+.+ ++-++|+-.+.+-......+.+
T Consensus 66 ~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 66 SVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred cCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 79999999876544 333332 2336777777664433333333
No 243
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.69 E-value=0.25 Score=51.18 Aligned_cols=87 Identities=17% Similarity=0.319 Sum_probs=54.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC---------CeeeCCCCCCHHHHHHHHHhcCCCcCCCCc----
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK---------TTIYNPNGFNIPKLQKYVTFTRSIKDFNEG---- 287 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~---------G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~---- 287 (428)
.|+..+|+|+|.|.+|+.+++.|...|..=+.+.|.+ -.+|+++-+...+....+++-..+...-..
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 4688899999999999999999999997555788865 346666655544544443322222111111
Q ss_pred eeccCCC---cccccCceEEecccc
Q psy8193 288 EKINDSK---EFWSIPCDILIPAAI 309 (428)
Q Consensus 288 ~~i~~~~---~il~~~~DIliPaA~ 309 (428)
..++ .+ +++ .++|++|.|+-
T Consensus 118 ~~i~-~~~~~~~~-~~~DlVid~~D 140 (370)
T PRK05600 118 ERLT-AENAVELL-NGVDLVLDGSD 140 (370)
T ss_pred eecC-HHHHHHHH-hCCCEEEECCC
Confidence 1122 21 222 46899998873
No 244
>KOG0409|consensus
Probab=91.64 E-value=0.33 Score=48.82 Aligned_cols=175 Identities=19% Similarity=0.256 Sum_probs=100.7
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
+....+|--+|.|+.|++.+..|.+.|++|+ |.| .+.++..++.+...++.+- |.|+ ..+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~d----------r~~~k~~~f~~~Ga~v~~s--------PaeV-ae~ 91 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYD----------RTKDKCKEFQEAGARVANS--------PAEV-AED 91 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEE-EEe----------CcHHHHHHHHHhchhhhCC--------HHHH-Hhh
Confidence 3467899999999999999999999999995 888 7888888888876655443 3332 246
Q ss_pred ceEEecccc-----ccccccccccccc-----ceEEEecCC-CC-CCHHHHHHHHHCCCceeccccccccchhh------
Q psy8193 301 CDILIPAAI-----EDQITINNANNVT-----AKIILEGAN-GP-TTTEADDILRDKGIILAPDVITNAGGVIV------ 362 (428)
Q Consensus 301 ~DIliPaA~-----~~~It~~na~~l~-----akiIvegAN-~p-~t~ea~~iL~~rGI~viPD~laNaGGVi~------ 362 (428)
||++|-|-. ..++.+.+ .-++ .+..++..- -| ++.|..+.+..+|-.++--.+. ||+.-
T Consensus 92 sDvvitmv~~~~~v~~v~~g~~-Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVS--Gg~~~A~~G~L 168 (327)
T KOG0409|consen 92 SDVVITMVPNPKDVKDVLLGKS-GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVS--GGVKGAEEGTL 168 (327)
T ss_pred cCEEEEEcCChHhhHHHhcCCC-cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEecccc--CCchhhhcCeE
Confidence 677665432 11111111 0010 111122111 11 1234455667777777766665 66622
Q ss_pred --------hHHHHHhhccc-----CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8193 363 --------SYFEWVQNLSN-----LLW--------TEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTR 418 (428)
Q Consensus 363 --------s~~E~~qn~~~-----~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~r 418 (428)
.-|||.+..-. ..+ ...-+++.+-.+.--.+.+-+.++++.+++++.-+.++-.-|
T Consensus 169 timagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~ 245 (327)
T KOG0409|consen 169 TIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGR 245 (327)
T ss_pred EEEecCcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Confidence 23555432210 000 112334444444445677778888899998888777664433
No 245
>PRK08291 ectoine utilization protein EutC; Validated
Probab=91.63 E-value=3.2 Score=42.09 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=71.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
..++++|.|.|..|+..+..|.. .+.+-|.|.+ -+.++..++.++...-.+. .....++.++.+ .++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~----------R~~~~a~~l~~~~~~~~g~-~v~~~~d~~~al-~~a 198 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWA----------RDAAKAEAYAADLRAELGI-PVTVARDVHEAV-AGA 198 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEc----------CCHHHHHHHHHHHhhccCc-eEEEeCCHHHHH-ccC
Confidence 45799999999999998888875 5666677887 4666666665532211111 112223233444 378
Q ss_pred eEEecccc--cccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccccc
Q psy8193 302 DILIPAAI--EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 355 (428)
Q Consensus 302 DIliPaA~--~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~la 355 (428)
||++-|+. +-.++.+.+.. .+.+.+=|++.|...|.+.-+.++.-.|+-|.+.
T Consensus 199 DiVi~aT~s~~p~i~~~~l~~-g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~ 253 (330)
T PRK08291 199 DIIVTTTPSEEPILKAEWLHP-GLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLS 253 (330)
T ss_pred CEEEEeeCCCCcEecHHHcCC-CceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHH
Confidence 99998875 33444433221 2346666788887666654444444345556554
No 246
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.57 E-value=0.77 Score=36.30 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=35.8
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHH
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 272 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~ 272 (428)
||+|+|.|.+|..+|..|.+.|.+|. +.+....+. ..+|.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~~~ 44 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDAAK 44 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHHHH
Confidence 68999999999999999999999985 777666666 567765533
No 247
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.56 E-value=0.45 Score=46.25 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=53.0
Q ss_pred ceEEEEeccHHHHHHHHHHHHCC---CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~G---akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
++|.|+|+|++|+.+++.|.+.| ..| .+.|. +.+.+.++.++.+ ....++.++++ .+|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v-~v~~r----------~~~~~~~~~~~~g-------~~~~~~~~~~~-~~a 63 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDI-IVSDP----------SPEKRAALAEEYG-------VRAATDNQEAA-QEA 63 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceE-EEEcC----------CHHHHHHHHHhcC-------CeecCChHHHH-hcC
Confidence 57999999999999999999888 444 46663 3445544444322 12222233443 478
Q ss_pred eEEeccccccccccccccccc---ceEEEecCCCC
Q psy8193 302 DILIPAAIEDQITINNANNVT---AKIILEGANGP 333 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l~---akiIvegAN~p 333 (428)
|+++-|.....+. +.+..++ -++|+--.|+-
T Consensus 64 dvVil~v~~~~~~-~v~~~l~~~~~~~vvs~~~gi 97 (267)
T PRK11880 64 DVVVLAVKPQVME-EVLSELKGQLDKLVVSIAAGV 97 (267)
T ss_pred CEEEEEcCHHHHH-HHHHHHHhhcCCEEEEecCCC
Confidence 9999887654332 2222221 24667666654
No 248
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=91.53 E-value=0.39 Score=45.61 Aligned_cols=52 Identities=31% Similarity=0.293 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHH--HHCCCEEEEEEcC
Q psy8193 204 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQDD 256 (428)
Q Consensus 204 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakvVaVsD~ 256 (428)
||=|...++..-+.+|.. ...+|+|.|+|++|..+++.+ ...|.+++++.|.
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 566666666666666766 568999999999999999864 3568999999984
No 249
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.52 E-value=0.96 Score=45.57 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=42.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHH----CCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK----AGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~----~GakvVaVsD~ 256 (428)
-.++|..|+ -+.+++++.+++|++|+|+|= ..||+-++.+|.+ .++.|. ++.+
T Consensus 138 ~~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs 195 (295)
T PRK14174 138 FVSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHS 195 (295)
T ss_pred cCCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeC
Confidence 357899887 455667899999999999998 5579999999987 688874 6664
No 250
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=91.51 E-value=0.4 Score=47.81 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+.|-+|++.. +++++.++.|++++|+|-+| ||+.++.+|...++.| .||.+
T Consensus 136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTV-tvcHs 188 (283)
T COG0190 136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATV-TVCHS 188 (283)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEE-EEEcC
Confidence 47898887655 55678999999999999977 7999999999999998 58885
No 251
>PRK05717 oxidoreductase; Validated
Probab=91.48 E-value=0.41 Score=45.67 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++|++++|.|. |.+|+++|+.|.+.|++|+ +.|
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LAD 41 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEc
Confidence 4688999999997 9999999999999999986 455
No 252
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.46 E-value=0.6 Score=46.30 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|++|+.+|+.|...|..|+ +.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEe
Confidence 579999999999999999999999885 667
No 253
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.33 E-value=3.7 Score=41.27 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=58.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCc--------eeccCCCcc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG--------EKINDSKEF 296 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~--------~~i~~~~~i 296 (428)
++|+|+|.|.+|..+|..|.+.|..|+ +.|.+ +......+..-.+.+.++. -...+..+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~-~~~r~-----------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVT-LIGRA-----------RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEE-EEecH-----------HHHHHHHhcCceeecCCCcceecccceeEeccChhh
Confidence 579999999999999999999999886 44431 1112222211112111110 001101122
Q ss_pred cccCceEEecccccccccccccccc-----cceEEEecCCCCCCH-HHHHHHHH
Q psy8193 297 WSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTTT-EADDILRD 344 (428)
Q Consensus 297 l~~~~DIliPaA~~~~It~~na~~l-----~akiIvegAN~p~t~-ea~~iL~~ 344 (428)
..++|+++-|.-...+ .+-+..+ .-.+|+.-.|+..+. ...+.+.+
T Consensus 71 -~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~ 122 (341)
T PRK08229 71 -LATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG 122 (341)
T ss_pred -ccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence 2479999988754433 2333333 225677778887644 34455543
No 254
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.21 E-value=0.67 Score=45.87 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|+.+|..|.+.|..|+ +.|
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEe
Confidence 479999999999999999999999875 666
No 255
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.19 E-value=0.59 Score=50.42 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=27.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|+.+|..|...|..|+ +.|
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d 35 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYD 35 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 579999999999999999999999985 777
No 256
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=91.18 E-value=1.9 Score=45.78 Aligned_cols=132 Identities=21% Similarity=0.333 Sum_probs=70.6
Q ss_pred CceEEEEeccHHHHHHHHHHHHC---CCEEEEEEcCCCeeeCCCCCCHHHH---HHHHHhcCCCcC---C-C------Cc
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKL---QKYVTFTRSIKD---F-N------EG 287 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~---GakvVaVsD~~G~i~n~~GlD~~~l---~~~~~~~g~l~~---~-~------~~ 287 (428)
-.||+|-|||-+|+.+.|.+.+. ...||+|-|. .|++.+ ++|---+|.+.. + . +.
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~G 145 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVDG 145 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEECC
Confidence 37999999999999999987643 5899999884 344443 332223343211 0 0 11
Q ss_pred eec---c--CCCc-cc-ccCceEEecccccccccccccccc---cceEEEecCC-----CCC-CHHH-HHHHHHCCCcee
Q psy8193 288 EKI---N--DSKE-FW-SIPCDILIPAAIEDQITINNANNV---TAKIILEGAN-----GPT-TTEA-DDILRDKGIILA 350 (428)
Q Consensus 288 ~~i---~--~~~~-il-~~~~DIliPaA~~~~It~~na~~l---~akiIvegAN-----~p~-t~ea-~~iL~~rGI~vi 350 (428)
+.+ . ++.+ -| +..+||++.|+.. ..+.+.+... .||.|.=.|- -|+ =++. .+.|..+ .
T Consensus 146 k~I~V~~~~dp~~l~W~~~gVDiViE~TG~-f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~----~ 220 (442)
T PLN02237 146 KPIKVVSNRDPLKLPWAELGIDIVIEGTGV-FVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHE----V 220 (442)
T ss_pred EEEEEEEcCCchhCChhhcCCCEEEEccCh-hhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcC----C
Confidence 111 1 1112 23 4689999999843 3556655543 4655554431 121 1221 2233321 1
Q ss_pred ccccccccchhhhHHHHHh
Q psy8193 351 PDVITNAGGVIVSYFEWVQ 369 (428)
Q Consensus 351 PD~laNaGGVi~s~~E~~q 369 (428)
..+++|+-.-+.+-.-.++
T Consensus 221 ~~IISnaSCTTNcLAPvlk 239 (442)
T PLN02237 221 ANIVSNASCTTNCLAPFVK 239 (442)
T ss_pred CCEEECCchHHHHHHHHHH
Confidence 2356777666665554443
No 257
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.10 E-value=0.39 Score=48.11 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=55.3
Q ss_pred ceEEEEeccHHHHHHHH-HHHHCCCEEEEEEcCCCeeeCCCCCCHHHH-HHHHHhcCCCcCCCCceeccCCCcccc-cCc
Q psy8193 225 SKISIQGFGNVGSVAAN-LFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 301 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~-~L~~~GakvVaVsD~~G~i~n~~GlD~~~l-~~~~~~~g~l~~~~~~~~i~~~~~il~-~~~ 301 (428)
.+|+|+|.|++|...+. ++...+..+++|+| +|++.. ++..++.|.- ...++.++++. -+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d----------~d~es~~la~A~~~Gi~------~~~~~~e~ll~~~dI 65 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVG----------IDPESDGLARARELGVK------TSAEGVDGLLANPDI 65 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEe----------CCcccHHHHHHHHCCCC------EEECCHHHHhcCCCC
Confidence 58999999999997754 44456899999999 555432 1333333311 11121334443 468
Q ss_pred eEEecccccccccccccccc---cceEEEe--cCCCCC
Q psy8193 302 DILIPAAIEDQITINNANNV---TAKIILE--GANGPT 334 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l---~akiIve--gAN~p~ 334 (428)
|+++-|+. +..+.+++... .+.+|+| .+++|+
T Consensus 66 DaV~iaTp-~~~H~e~a~~al~aGk~VIdekPa~~~pl 102 (285)
T TIGR03215 66 DIVFDATS-AKAHARHARLLAELGKIVIDLTPAAIGPY 102 (285)
T ss_pred CEEEECCC-cHHHHHHHHHHHHcCCEEEECCccccCCc
Confidence 88888884 33566655554 4555554 345553
No 258
>KOG2018|consensus
Probab=91.02 E-value=1.1 Score=45.36 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=30.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++.=|+|+|.|.||+|++.+|.+.|.+=+-|.|
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence 36788899999999999999999999976556776
No 259
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=91.00 E-value=0.77 Score=46.32 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~ 256 (428)
-.++|..||...+ ++++.+++|++|+|+|=+ .||+-++.+|.++|+.| .++.+
T Consensus 146 ~~PcTp~avi~lL----~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATV-tvchs 199 (299)
T PLN02516 146 FLPCTPKGCLELL----SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATV-TVVHS 199 (299)
T ss_pred CCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEE-EEeCC
Confidence 3578999876655 467999999999999985 57999999999999998 58875
No 260
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.87 E-value=0.37 Score=48.83 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=40.2
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
....+|+|.|.|-||.++||...-.|++| .|.| +++++|..+....
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~V-tild----------~n~~rl~~ldd~f 211 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADV-TILD----------LNIDRLRQLDDLF 211 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCee-EEEe----------cCHHHHhhhhHhh
Confidence 45678999999999999999999999998 5999 8999988876654
No 261
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.87 E-value=0.48 Score=49.49 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=32.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~ 276 (428)
++|+|.|+|++|+.+++.|.+.|..|+ +.| -|.+.+.+..+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~-vid----------~~~~~~~~~~~ 41 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVT-VID----------TDEERLRRLQD 41 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEE----------CCHHHHHHHHh
Confidence 479999999999999999999999987 445 35566555544
No 262
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.83 E-value=0.17 Score=52.79 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
|+..+|+|.|.|-+|+.+|+.|...|..=+.+.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 577899999999999999999999998666788853
No 263
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.82 E-value=0.62 Score=46.68 Aligned_cols=52 Identities=17% Similarity=0.322 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.++|..|+.. ++++++.+++|++|+|+|= .-||+-++.+|.++|+.|. ++++
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 4788888765 4566799999999999998 5689999999999999985 7764
No 264
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.81 E-value=0.58 Score=43.21 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=27.8
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
+|+|.|.|.+|+.+++.|.+.|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998645688854
No 265
>KOG1257|consensus
Probab=90.80 E-value=1.6 Score=46.92 Aligned_cols=177 Identities=18% Similarity=0.160 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCCcccCCCCCCCHHHHHHHHHHhhhhcCCcCCceeecccccCCCcCCCCChhHHHHHH
Q psy8193 130 SNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFI 209 (428)
Q Consensus 130 s~~ele~~~r~f~~~l~~~iG~~~dipapDvgt~~~~ma~~~d~y~~~~g~~~~~~vtGkp~~~GGs~~r~~aTg~Gv~~ 209 (428)
+-+|-..++..|++++..-.||+..|--.|.++.-+- -+.+.|+.-. -++. +--.-||-=+..
T Consensus 233 ~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf--rlL~kYr~~~-----c~FN----------DDIQGTaaValA 295 (582)
T KOG1257|consen 233 RGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF--RLLEKYRNKY-----CMFN----------DDIQGTAAVALA 295 (582)
T ss_pred cccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH--HHHHHhcccc-----ceec----------ccccchhHHHHH
Confidence 3455567889999999999999999999999874311 1345554321 1111 122456666667
Q ss_pred HHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHH----CCC-------EEEEEEcCCCeeeCCC--CCCHHHHHHHHH
Q psy8193 210 IGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA-------KIVAIQDDKTTIYNPN--GFNIPKLQKYVT 276 (428)
Q Consensus 210 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kvVaVsD~~G~i~n~~--GlD~~~l~~~~~ 276 (428)
++-.+++..+.++++.+++++|.|..|..+|.++.. .|. +| -..|++|-|.... .++..+. .+.
T Consensus 296 gllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkI-wlvD~~GLi~~~r~~~l~~~~~--~fA 372 (582)
T KOG1257|consen 296 GLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKI-WLVDSKGLITKGRKASLTEEKK--PFA 372 (582)
T ss_pred HHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccE-EEEecCceeeccccCCCChhhc--ccc
Confidence 888888888999999999999999999999987643 452 44 5778887776433 2332221 111
Q ss_pred hcCCCcCCCCceeccCCCc-ccccCceEEecccc-cccccccccccc---cceEEEecCCCCC
Q psy8193 277 FTRSIKDFNEGEKINDSKE-FWSIPCDILIPAAI-EDQITINNANNV---TAKIILEGANGPT 334 (428)
Q Consensus 277 ~~g~l~~~~~~~~i~~~~~-il~~~~DIliPaA~-~~~It~~na~~l---~akiIvegAN~p~ 334 (428)
+ ..+.+.+..+ +-.++..|||=|+. ++..|++..... +.|=|+=+=-+|+
T Consensus 373 k--------~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT 427 (582)
T KOG1257|consen 373 K--------DHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPT 427 (582)
T ss_pred c--------cChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCc
Confidence 0 0111111222 23578888888875 788888755444 3443333444454
No 266
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.79 E-value=1.2 Score=40.12 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=49.9
Q ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCce-----ecc-CCCccccc
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE-----KIN-DSKEFWSI 299 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~-----~i~-~~~~il~~ 299 (428)
+|+|.|.|+.|..+|..|.+.|..|. +.+ -|.+.+.++.+.+.....+++.+ .++ |.++.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~----------~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWG----------RDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EET----------SCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEe----------ccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence 68999999999999999999998874 555 34466666665544333333321 122 122333 4
Q ss_pred CceEEecccccccccccccccc
Q psy8193 300 PCDILIPAAIEDQITINNANNV 321 (428)
Q Consensus 300 ~~DIliPaA~~~~It~~na~~l 321 (428)
++|+++-|.....+ ++.++++
T Consensus 69 ~ad~IiiavPs~~~-~~~~~~l 89 (157)
T PF01210_consen 69 DADIIIIAVPSQAH-REVLEQL 89 (157)
T ss_dssp T-SEEEE-S-GGGH-HHHHHHH
T ss_pred cccEEEecccHHHH-HHHHHHH
Confidence 78998877765554 3444444
No 267
>PLN02712 arogenate dehydrogenase
Probab=90.75 E-value=0.52 Score=52.60 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=45.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
+.++|.|+|+|++|+.+|+.|.+.|.+|++ .|.+ + .. +..++.| ....++.+++...+||
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~-~dr~---------~-~~--~~A~~~G-------v~~~~d~~e~~~~~aD 110 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLA-HSRS---------D-HS--LAARSLG-------VSFFLDPHDLCERHPD 110 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEE-EeCC---------H-HH--HHHHHcC-------CEEeCCHHHHhhcCCC
Confidence 457899999999999999999999998865 4421 1 11 1122222 2222224444445699
Q ss_pred EEeccccccc
Q psy8193 303 ILIPAAIEDQ 312 (428)
Q Consensus 303 IliPaA~~~~ 312 (428)
|++-|.....
T Consensus 111 vViLavP~~~ 120 (667)
T PLN02712 111 VILLCTSIIS 120 (667)
T ss_pred EEEEcCCHHH
Confidence 9999987443
No 268
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.72 E-value=0.32 Score=49.49 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCCCCceEEEEeccHHHHHHHHHH-HHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc
Q psy8193 219 NLNIINSKISIQGFGNVGSVAANLF-FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 297 (428)
Q Consensus 219 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il 297 (428)
+.+|.|++|.|+|+|++|+.+|+.| ...|.+|+ ..|.+. + ... ... .+..++.++++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~-~~d~~~--------~-~~~----~~~--------~~~~~~l~ell 198 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVV-AYDPFP--------N-AKA----ATY--------VDYKDTIEEAV 198 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCc--------c-HhH----Hhh--------ccccCCHHHHH
Confidence 3468999999999999999999999 55788886 345321 0 011 000 11111134444
Q ss_pred ccCceEEeccccccccccc-----ccccc-cceEEEecCCCCC--CHHHHHHHHHCCC
Q psy8193 298 SIPCDILIPAAIEDQITIN-----NANNV-TAKIILEGANGPT--TTEADDILRDKGI 347 (428)
Q Consensus 298 ~~~~DIliPaA~~~~It~~-----na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI 347 (428)
.+||+++-|...+..|.. ....+ +-.+++.-+-+.+ +.+..+.|++..|
T Consensus 199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence 378999988765544433 23333 2348888888886 3444567776655
No 269
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.66 E-value=0.53 Score=47.64 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~ 256 (428)
++++|+|+|.|+||+.+|..|...|. .+ .+.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el-~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADEL-VIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEE-EEEeC
Confidence 56799999999999999999988885 44 57774
No 270
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.63 E-value=0.62 Score=46.07 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=66.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCC----CEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~G----akvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
.+|.|+|+|++|+.+++.|.+.| .+|+.+..+ +.+.+.....+. ++.....+..++. .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~----------~~~~~~~l~~~~------~~~~~~~~~~e~~-~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS----------KNEHFNQLYDKY------PTVELADNEAEIF-TK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC----------cHHHHHHHHHHc------CCeEEeCCHHHHH-hh
Confidence 37999999999999999999988 566544332 112233332221 1222222133333 48
Q ss_pred ceEEecccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHH-CCCceecccccc
Q psy8193 301 CDILIPAAIEDQITI---NNANNVT-AKIILEGANGPTTTEADDILRD-KGIILAPDVITN 356 (428)
Q Consensus 301 ~DIliPaA~~~~It~---~na~~l~-akiIvegAN~p~t~ea~~iL~~-rGI~viPD~laN 356 (428)
||++|-|.....+.+ +-.+.++ -++|+.-+|+-...+-.+.|.. +=|.++|..-+-
T Consensus 65 aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~ 125 (277)
T PRK06928 65 CDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSA 125 (277)
T ss_pred CCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHH
Confidence 999998876554332 1112232 3477888888666666666643 334677765443
No 271
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.61 E-value=0.7 Score=46.15 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.+.|..|+... +++++.+++|++|+|+|- ..||+-++.+|.++|+.| .+++++. -|+.
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtV-t~chs~T-------~~l~--------- 196 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATV-TICHSKT-------KNLK--------- 196 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEE-EEeCCCC-------CCHH---------
Confidence 57888887665 556789999999999998 568999999999999988 5887531 1111
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
-+...+||+|-|+. .+.|+.+.+..
T Consensus 197 -----------------~~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 197 -----------------EVCKKADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred -----------------HHHhhCCEEEEcCCCcCccCHHHcCC
Confidence 12346888888886 77787776553
No 272
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.47 E-value=0.71 Score=46.22 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.++|..||...+ +++|.+++|++|+|+|-+ .||+-++.+|.++|+.| .++.++. -|+.
T Consensus 137 ~PcTp~avi~lL----~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atV-tichs~T-------~~l~--------- 195 (284)
T PRK14170 137 VPCTPAGIIELI----KSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATV-TIAHSRT-------KDLP--------- 195 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE-EEeCCCC-------CCHH---------
Confidence 578988876654 568999999999999985 57999999999999998 4777531 0111
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
-....+||+|-|+. .+.|+.+.+..
T Consensus 196 -----------------~~~~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 196 -----------------QVAKEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred -----------------HHHhhCCEEEEecCCcCccCHHHcCC
Confidence 12246788888876 67777776654
No 273
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.29 E-value=0.86 Score=45.27 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
..+.+|+|.|.|.||..+++++...|+++|.++|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~ 176 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWE 176 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence 3578899999999999999999999998777777
No 274
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.28 E-value=0.68 Score=46.19 Aligned_cols=30 Identities=37% Similarity=0.631 Sum_probs=26.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|++|+.+|..|.+.|..|+ +.|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEE
Confidence 579999999999999999999999876 566
No 275
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.27 E-value=0.39 Score=45.24 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=32.6
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|.|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3688999999999999999999999998766788853
No 276
>KOG0089|consensus
Probab=90.27 E-value=0.27 Score=48.68 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.++|-.|++.. ++++|+.+.|++++|.|= =+||+-+|-+|+..|+++-.+-|.
T Consensus 146 lPcTP~gv~ei----L~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~da 199 (309)
T KOG0089|consen 146 LPCTPLGVVEI----LERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDA 199 (309)
T ss_pred cCCchHHHHHH----HHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcc
Confidence 47899888754 567799999999999997 789999999999999887655553
No 277
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.25 E-value=0.79 Score=45.85 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~ 256 (428)
..++|.+|+...+ ++++.+++|++|+|+|=+ .||+-++.+|.++|+.|. ++.+
T Consensus 135 ~~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs 188 (282)
T PRK14169 135 VVASTPYGIMALL----DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHS 188 (282)
T ss_pred CCCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECC
Confidence 4688998887654 567999999999999984 579999999999999984 7765
No 278
>PRK07411 hypothetical protein; Validated
Probab=90.18 E-value=0.51 Score=49.22 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.|+..+|+|.|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3678899999999999999999999998666788853
No 279
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.14 E-value=1.1 Score=44.95 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=27.0
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|..+|..|.+.|.+|+ +.|
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEe
Confidence 379999999999999999999999985 666
No 280
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.12 E-value=0.32 Score=42.54 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=29.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.+||+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998666788853
No 281
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.11 E-value=2.3 Score=42.84 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEE
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVs 254 (428)
..|.+|+|+|.|.||..+++++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 368899999999999999999999999987554
No 282
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.93 E-value=0.83 Score=45.85 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
-.+.|..||.. ++++++.+++|++++|+|-+ -||+-++.+|.++|+.| .+|.++
T Consensus 138 ~~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATV-tichs~ 192 (288)
T PRK14171 138 FIPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSV-TICHSK 192 (288)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE-EEeCCC
Confidence 35789888655 45667999999999999985 57999999999999998 488753
No 283
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.81 E-value=1.2 Score=43.65 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=55.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCC-cC-CC-CceeccCCCcccccCc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI-KD-FN-EGEKINDSKEFWSIPC 301 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l-~~-~~-~~~~i~~~~~il~~~~ 301 (428)
++|+|.|.|++|+.+|..|.+.|..|+ +.+.+ .+.+....+..-.+ .+ .. .....++..++ .++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~-~~~r~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVT-LVARR----------GAHLDALNENGLRLEDGEITVPVLAADDPAEL--GPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC----------hHHHHHHHHcCCcccCCceeecccCCCChhHc--CCC
Confidence 479999999999999999999999886 44432 12233332221111 00 00 00111212222 689
Q ss_pred eEEeccccccccccccccc----ccc-eEEEecCCCCCCHH
Q psy8193 302 DILIPAAIEDQITINNANN----VTA-KIILEGANGPTTTE 337 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~----l~a-kiIvegAN~p~t~e 337 (428)
|+++-|.-...+ .+-+.. +.. ..|+--.|+.-..+
T Consensus 68 d~vila~k~~~~-~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 68 DLVILAVKAYQL-PAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred CEEEEecccccH-HHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999988765443 222222 332 36777888865444
No 284
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.81 E-value=7.8 Score=40.94 Aligned_cols=41 Identities=32% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHH
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 275 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~ 275 (428)
..++|.|+|.|.||..+|..|.+ |..|+ +.| +|.+++.++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D----------~~~~~ve~l~ 45 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFD----------VNKKRILELK 45 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEE-EEe----------CCHHHHHHHH
Confidence 34789999999999999999876 68876 677 6666666655
No 285
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.77 E-value=3.3 Score=42.64 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=27.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~ 256 (428)
.||+|-|||-+|+.+.|.+.+. +..||+|-|.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence 5899999999999999987654 6899999883
No 286
>PRK06823 ornithine cyclodeaminase; Validated
Probab=89.65 E-value=2 Score=43.53 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
.-++++|.|.|..+++-++.+... ..+=|-|.+ -+.++..++.+.-... ++ .....++.++.. .++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~----------r~~~~a~~~~~~~~~~-~~-~v~~~~~~~~av-~~A 193 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWG----------RSETALEEYRQYAQAL-GF-AVNTTLDAAEVA-HAA 193 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHhc-CC-cEEEECCHHHHh-cCC
Confidence 457999999999999999888763 333344555 3455555554322111 12 233333233333 689
Q ss_pred eEEecccc--cccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceecccc
Q psy8193 302 DILIPAAI--EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 354 (428)
Q Consensus 302 DIliPaA~--~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~l 354 (428)
||++-|+. +-++..+... =.+-+++=|++.|-..|.+.-+-+|.-.|+-|..
T Consensus 194 DIV~taT~s~~P~~~~~~l~-~G~hi~~iGs~~p~~~Eld~~~l~~a~~vvvD~~ 247 (315)
T PRK06823 194 NLIVTTTPSREPLLQAEDIQ-PGTHITAVGADSPGKQELDAELVARADKILVDSI 247 (315)
T ss_pred CEEEEecCCCCceeCHHHcC-CCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 99998875 4445555442 2567888899999777766544455433444553
No 287
>PRK08507 prephenate dehydrogenase; Validated
Probab=89.63 E-value=0.75 Score=45.19 Aligned_cols=70 Identities=27% Similarity=0.313 Sum_probs=44.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
++|.|+|+|++|+.+++.|.+.|. +|+ +.| .+.+.+.+.. +.|.... ..+..++. +||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d----------~~~~~~~~~~-~~g~~~~------~~~~~~~~--~aD 60 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYD----------HNELHLKKAL-ELGLVDE------IVSFEELK--KCD 60 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEc----------CCHHHHHHHH-HCCCCcc------cCCHHHHh--cCC
Confidence 379999999999999999999885 443 456 3455554443 2332111 11133443 499
Q ss_pred EEeccccccccc
Q psy8193 303 ILIPAAIEDQIT 314 (428)
Q Consensus 303 IliPaA~~~~It 314 (428)
++|-|.....+.
T Consensus 61 ~Vilavp~~~~~ 72 (275)
T PRK08507 61 VIFLAIPVDAII 72 (275)
T ss_pred EEEEeCcHHHHH
Confidence 999988765543
No 288
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.58 E-value=0.95 Score=45.63 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=63.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.++|..|+... ++++|.+++|++|+|+|= .-||+-++.+|.++|+.| .++.++. -|++
T Consensus 138 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atV-tv~hs~T-------~~l~--------- 196 (297)
T PRK14186 138 RSCTPAGVMRL----LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATV-TIAHSRT-------QDLA--------- 196 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEE-EEeCCCC-------CCHH---------
Confidence 46888877654 566799999999999998 457999999999999998 4776421 0111
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-cccccccccccccceEEEecC
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 330 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~l~akiIvegA 330 (428)
-+...+||+|-|.. .+.++++.+..= | +|++..
T Consensus 197 -----------------~~~~~ADIvIsAvGkp~~i~~~~ik~g-a-vVIDvG 230 (297)
T PRK14186 197 -----------------SITREADILVAAAGRPNLIGAEMVKPG-A-VVVDVG 230 (297)
T ss_pred -----------------HHHhhCCEEEEccCCcCccCHHHcCCC-C-EEEEec
Confidence 12246788888775 677776655532 2 454443
No 289
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.54 E-value=0.66 Score=43.32 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|.|.|-||..+|-.|++.|.+|+ ..|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~-g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVI-GVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEE-EE-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEE-EEe
Confidence 589999999999999999999999997 456
No 290
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.46 E-value=5.7 Score=42.47 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=37.6
Q ss_pred HHHHHHHHHH-HhCC--CCCCceEEEEeccHHHHHHHHHHHHC-----CCEEEEEEcCCC
Q psy8193 207 VFIIGSKIAS-KINL--NIINSKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDDKT 258 (428)
Q Consensus 207 v~~~~~~~~~-~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~-----GakvVaVsD~~G 258 (428)
+-.+++.-+. ..+. +.+.++|+|-|||-+|+.++|.+.+. +.++|||-+..+
T Consensus 107 ~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 107 VEAFVAEELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred HHHHHHHHHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 4445544433 2333 35788999999999999999998764 589999977544
No 291
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.40 E-value=1.3 Score=47.03 Aligned_cols=35 Identities=31% Similarity=0.636 Sum_probs=31.2
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
..+++|+|.|+|.-|..++++|.+.|++|+ |+|.+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~ 39 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDR 39 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCC
Confidence 458999999999999999999999999985 88843
No 292
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.39 E-value=0.94 Score=46.11 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=27.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|+..|..+...|..|+ +.|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 589999999999999999999999985 677
No 293
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=89.18 E-value=5.8 Score=40.70 Aligned_cols=94 Identities=22% Similarity=0.338 Sum_probs=55.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHH---HHHHHhcCCCcC---CC------Cceec-
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKL---QKYVTFTRSIKD---FN------EGEKI- 290 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l---~~~~~~~g~l~~---~~------~~~~i- 290 (428)
.+|+|.|||.+|+.+.+.+.+. ..+++++-|.. .|++.+ +++---+|.+.. .. +++.+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~--------~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPA--------GDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC--------CCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 5899999999999999998764 58999888732 355443 333223443311 00 11111
Q ss_pred -c---CCCc-ccccCceEEecccccccccccccccc---cceEEEe
Q psy8193 291 -N---DSKE-FWSIPCDILIPAAIEDQITINNANNV---TAKIILE 328 (428)
Q Consensus 291 -~---~~~~-il~~~~DIliPaA~~~~It~~na~~l---~akiIve 328 (428)
. ++++ -|. ++|+.+.|+.. ..+.+-++.. .||.|.-
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCCCEEEEE
Confidence 1 1222 344 89999999954 3566655543 4554443
No 294
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.14 E-value=0.87 Score=45.77 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=46.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCc---C--CC-CceeccCCCcccc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK---D--FN-EGEKINDSKEFWS 298 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~---~--~~-~~~~i~~~~~il~ 298 (428)
++|+|+|.|++|..++..|.+.|..|. +.+. |.+.+....+.+.... + ++ +....++.++.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r----------~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 69 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR----------NHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS 69 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec----------CHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh
Confidence 369999999999999999999998885 5552 3344444443322221 1 11 1112221223333
Q ss_pred cCceEEecccccccc
Q psy8193 299 IPCDILIPAAIEDQI 313 (428)
Q Consensus 299 ~~~DIliPaA~~~~I 313 (428)
.++|+++-|.....+
T Consensus 70 ~~~Dliiiavks~~~ 84 (326)
T PRK14620 70 DNATCIILAVPTQQL 84 (326)
T ss_pred CCCCEEEEEeCHHHH
Confidence 478988887655444
No 295
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=89.12 E-value=1.5 Score=43.59 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=38.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHH
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~ 276 (428)
.+++++++|.|. +.+|..+|+.|.++|..+|-|+- +.++|.++.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR-----------~~~kL~~la~ 48 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVAR-----------REDKLEALAK 48 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeC-----------cHHHHHHHHH
Confidence 357899999998 99999999999999999998886 4466666654
No 296
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.12 E-value=2.7 Score=43.99 Aligned_cols=119 Identities=22% Similarity=0.351 Sum_probs=68.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEE-c-------CCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQ-D-------DKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 296 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVs-D-------~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~i 296 (428)
.+++|+|+|-||.-+|-.+.+.|++|+++= | .+|..|=.+ .+.+++.+-..+.|.+ +..+|+ +-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~l------raTtd~-~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKL------RATTDP-EE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCc------eEecCh-hh
Confidence 899999999999999999999999999763 1 123333222 3344433333333322 122212 23
Q ss_pred cccCceEEecccccccccccccccc----------------cceEEEecCCCC-CCHHHHH-HHHHCCCceec-cc
Q psy8193 297 WSIPCDILIPAAIEDQITINNANNV----------------TAKIILEGANGP-TTTEADD-ILRDKGIILAP-DV 353 (428)
Q Consensus 297 l~~~~DIliPaA~~~~It~~na~~l----------------~akiIvegAN~p-~t~ea~~-iL~~rGI~viP-D~ 353 (428)
++ +||+++=|-..- ++...-+.+ ..=+|.|..=-| +|.+-.+ +|+++.=+..| ||
T Consensus 82 l~-~~dv~iI~VPTP-l~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df 155 (436)
T COG0677 82 LK-ECDVFIICVPTP-LKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF 155 (436)
T ss_pred cc-cCCEEEEEecCC-cCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence 33 899887665322 222111111 456888998888 5666555 55554433443 44
No 297
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=89.08 E-value=1.2 Score=46.60 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCCCCceEEEEec-----------------cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGF-----------------GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++|++|+|.|- |.+|..+|+.|.+.|++|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 4689999999997 8899999999999999997554
No 298
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=89.08 E-value=0.44 Score=49.00 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=62.6
Q ss_pred EEEEeccHHHHHHHHHHHHCCC--EEEEEEcCCCeeeCCCCCCHHHHHHHHHhc--CCCcCCCCceec--cCCCccc--c
Q psy8193 227 ISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT--RSIKDFNEGEKI--NDSKEFW--S 298 (428)
Q Consensus 227 vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~--g~l~~~~~~~~i--~~~~~il--~ 298 (428)
|.|.|.|.||+.+++.|.+.+- +| .|+| -+.+++.+..++. ..+. ...+ .|.+++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v-~va~----------r~~~~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEV-TVAD----------RNPEKAERLAEKLLGDRVE----AVQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EE-EEEE----------SSHHHHHHHHT--TTTTEE----EEE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcE-EEEE----------CCHHHHHHHHhhcccccee----EEEEecCCHHHHHHHH
Confidence 6899999999999999999874 55 5888 6778887776542 1111 1111 1122322 2
Q ss_pred cCceEEeccccccccccccc---ccccceEEEecCCCCCCH---HHHHHHHHCCCceecccccccc
Q psy8193 299 IPCDILIPAAIEDQITINNA---NNVTAKIILEGANGPTTT---EADDILRDKGIILAPDVITNAG 358 (428)
Q Consensus 299 ~~~DIliPaA~~~~It~~na---~~l~akiIvegAN~p~t~---ea~~iL~~rGI~viPD~laNaG 358 (428)
.+||++|.|+... .+..-+ -+.++.+|= -+. +++ +-++..+++|+.++++.=.+.|
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 4889999999655 332211 112555554 111 122 2345677889999887755544
No 299
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.98 E-value=1.3 Score=44.31 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHH--CCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK--AGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~--~GakvVaVsD~ 256 (428)
.++|..||...+ ++++.+++|++++|+|- ..||+-++.+|.+ +++.| .++.+
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atV-tvchs 192 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATV-TLCHT 192 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEE-EEeCC
Confidence 578998887665 56799999999999998 5689999999998 78988 58875
No 300
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.91 E-value=1.6 Score=45.61 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=67.0
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIl 304 (428)
..+-|+|.|-+|+++|.-+.++|.+| +|.++ ..++..++.++++....+-+...+++.-.-|+.|--|+
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~V-avyNR----------t~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~ 72 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTV-AVYNR----------TTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKIL 72 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceE-EEEeC----------CHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEE
Confidence 45789999999999999999999998 56664 34566666655543222222221110111222333333
Q ss_pred eccccccccc---ccccccc-cceEEEecCCCCC--CHHHHHHHHHCCCcee
Q psy8193 305 IPAAIEDQIT---INNANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 350 (428)
Q Consensus 305 iPaA~~~~It---~~na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI~vi 350 (428)
+----+..++ ++-.+.+ +--||++|.|.-. |..-.+.|.++||.++
T Consensus 73 lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~Fv 124 (473)
T COG0362 73 LMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFV 124 (473)
T ss_pred EEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEE
Confidence 2222111111 1122222 5679999999887 4455578999999886
No 301
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.85 E-value=1 Score=47.60 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=52.1
Q ss_pred ceEEEEe-ccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceE
Q psy8193 225 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 303 (428)
Q Consensus 225 ~~vaIqG-fGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DI 303 (428)
++|.|+| +|.+|+.+|+.|.+.|..|+ +.|. +.+.+.+...+.| ....++..+.+ .+||+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r----------~~~~~~~~a~~~g-------v~~~~~~~e~~-~~aDv 61 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTGR----------DPKKGKEVAKELG-------VEYANDNIDAA-KDADI 61 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEEC----------ChHHHHHHHHHcC-------CeeccCHHHHh-ccCCE
Confidence 4799997 89999999999999999875 5552 4444444444433 11111122222 47899
Q ss_pred Eecccccccccc---ccccccc-ceEEEecCC
Q psy8193 304 LIPAAIEDQITI---NNANNVT-AKIILEGAN 331 (428)
Q Consensus 304 liPaA~~~~It~---~na~~l~-akiIvegAN 331 (428)
+|-|.....+.. +-++.++ -.+|+.-++
T Consensus 62 VIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 62 VIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 888876544321 1222232 246666665
No 302
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.84 E-value=1.3 Score=44.06 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=26.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|++|+.++..|.+.|..| .+.|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V-~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDV-TLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEE-EEEE
Confidence 47999999999999999999999987 4666
No 303
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.82 E-value=5.1 Score=40.61 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=67.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
..++++|+|.|..|+..++.|.. .+.+-|.|.++ +.++..++.++...-.+. .....++.++.+ .+|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------~~~~a~~~a~~~~~~~g~-~v~~~~~~~~av-~~a 195 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------DSAKAEALALQLSSLLGI-DVTAATDPRAAM-SGA 195 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------CHHHHHHHHHHHHhhcCc-eEEEeCCHHHHh-ccC
Confidence 55799999999999999998874 67666678873 555655554432110011 112223223333 489
Q ss_pred eEEeccccc--ccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceecccc
Q psy8193 302 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 354 (428)
Q Consensus 302 DIliPaA~~--~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~l 354 (428)
||++-|+.. -.++.+-... .+.+..=|++.|.-.|.+.-+.++--+|+-|..
T Consensus 196 DiVvtaT~s~~p~i~~~~l~~-g~~i~~vg~~~p~~rEld~~~l~~a~~~vvD~~ 249 (326)
T TIGR02992 196 DIIVTTTPSETPILHAEWLEP-GQHVTAMGSDAEHKNEIDPAVIAKADHYVADRL 249 (326)
T ss_pred CEEEEecCCCCcEecHHHcCC-CcEEEeeCCCCCCceecCHHHHhccCEEEcCCH
Confidence 999999853 3444443221 344666677777655544322233333544543
No 304
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.71 E-value=1.2 Score=44.56 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=60.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhc
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 278 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~ 278 (428)
.++|..||... +++++.+++|++|+|+|=+ .||+-++.+|.++++.| .++.++- -|++
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtV-tichs~T-------~nl~--------- 195 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATV-TIAHSRT-------ADLA--------- 195 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE-EEeCCCC-------CCHH---------
Confidence 47898887665 4667899999999999985 57999999999999987 4776431 0110
Q ss_pred CCCcCCCCceeccCCCcccccCceEEecccc-ccccccccccc
Q psy8193 279 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 320 (428)
Q Consensus 279 g~l~~~~~~~~i~~~~~il~~~~DIliPaA~-~~~It~~na~~ 320 (428)
-+...+||+|-|+. .+.|+++.+..
T Consensus 196 -----------------~~~~~ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 196 -----------------GEVGRADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred -----------------HHHhhCCEEEEecCCcCccCHHHcCC
Confidence 12246888888886 67777765553
No 305
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.64 E-value=0.46 Score=48.26 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=28.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCC-EEEEEEcC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~ 256 (428)
+.++|+|+|.|+||+.+|..+...|. . +.+.|.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 45799999999999999999998885 6 568885
No 306
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=88.50 E-value=0.83 Score=40.67 Aligned_cols=30 Identities=43% Similarity=0.616 Sum_probs=25.3
Q ss_pred ceEEEEec-cHHHHHHHHHHHHCC--CEEEEEEc
Q psy8193 225 SKISIQGF-GNVGSVAANLFFKAG--AKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGf-GnVG~~~a~~L~~~G--akvVaVsD 255 (428)
.+|+|+|. |+||+++|..|...+ ..+ .+.|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei-~L~D 33 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEI-VLID 33 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEE-EEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCce-EEec
Confidence 47999999 999999999998876 355 4777
No 307
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=88.40 E-value=1.4 Score=44.64 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcC
Q psy8193 201 KATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 279 (428)
Q Consensus 201 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g 279 (428)
..||.-.++++ .+.|..=.|.+|+|.+. |.||+-+.++-.-+|++||+++-+. ++..=.++..|
T Consensus 132 GmpG~TAY~gL----l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-----------eK~~~l~~~lG 196 (340)
T COG2130 132 GMPGLTAYFGL----LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-----------EKCDFLTEELG 196 (340)
T ss_pred CCchHHHHHHH----HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-----------HHHHHHHHhcC
Confidence 34444444444 34566667999999998 9999988887777899999999742 33332333232
Q ss_pred CC--cCCCCceeccCCCcccc----cCceEEeccccccccccc-ccccccceEEEecC
Q psy8193 280 SI--KDFNEGEKINDSKEFWS----IPCDILIPAAIEDQITIN-NANNVTAKIILEGA 330 (428)
Q Consensus 280 ~l--~~~~~~~~i~~~~~il~----~~~DIliPaA~~~~It~~-na~~l~akiIvegA 330 (428)
-- -+|... + ..+-|. --.||++++-.+++.++- +--+.+|||++-|+
T Consensus 197 fD~~idyk~~---d-~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~ 250 (340)
T COG2130 197 FDAGIDYKAE---D-FAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGA 250 (340)
T ss_pred CceeeecCcc---c-HHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeee
Confidence 11 122111 1 222332 245999999877776542 22234789998887
No 308
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.25 E-value=2.5 Score=45.33 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHCC--CEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~G--akvVaVsD 255 (428)
++|+|+|.|.||..+|-.|++.| .+|+++ |
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-D 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-E
Confidence 57999999999999999999985 778765 6
No 309
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=87.92 E-value=1.4 Score=46.04 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=35.6
Q ss_pred ceEEEEe-ccHHHHHHHHHHHHC--CCEEEEEE-cCCCeeeCCCCCCHHHHHHHHHhcC
Q psy8193 225 SKISIQG-FGNVGSVAANLFFKA--GAKIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTR 279 (428)
Q Consensus 225 ~~vaIqG-fGnVG~~~a~~L~~~--GakvVaVs-D~~G~i~n~~GlD~~~l~~~~~~~g 279 (428)
++|+|.| .|++|...++.+.+. ..+|++++ + -+++.+.+..++.+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~----------~n~~~l~~q~~~f~ 50 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG----------KNVELLAEQAREFR 50 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC----------CCHHHHHHHHHHhC
Confidence 6899999 799999999988664 68999998 5 56677776665543
No 310
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.85 E-value=1.5 Score=43.76 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=45.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
-.+|+|+|+|++|..+++.|.+.|. +| .+.|. +.+.+....+ .|... ...++.++.+ .+|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V-~~~dr----------~~~~~~~a~~-~g~~~-----~~~~~~~~~~-~~a 67 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEI-VGADR----------SAETRARARE-LGLGD-----RVTTSAAEAV-KGA 67 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEE-EEEEC----------CHHHHHHHHh-CCCCc-----eecCCHHHHh-cCC
Confidence 4689999999999999999999885 55 46663 4444444332 22111 1112123333 479
Q ss_pred eEEeccccccc
Q psy8193 302 DILIPAAIEDQ 312 (428)
Q Consensus 302 DIliPaA~~~~ 312 (428)
|++|-|.....
T Consensus 68 DvViiavp~~~ 78 (307)
T PRK07502 68 DLVILCVPVGA 78 (307)
T ss_pred CEEEECCCHHH
Confidence 99999987544
No 311
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.77 E-value=0.75 Score=48.95 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
+++++|+|.|+|.-|..+|++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 568999999999999999999999999985 78853
No 312
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=87.00 E-value=0.33 Score=51.55 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=28.0
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEE
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIV 251 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvV 251 (428)
.|+|++|+|+|+|+.|+.-|.-|...|.+|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 4799999999999999988888888898875
No 313
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.87 E-value=1.3 Score=42.56 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 37 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVD 37 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 468899999997 8999999999999999986 555
No 314
>PRK06545 prephenate dehydrogenase; Validated
Probab=86.85 E-value=1 Score=46.20 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=25.8
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|.|+|+|++|+.+|+.|.+.|..+. +.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~-i~~ 30 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVF-IIG 30 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeE-EEE
Confidence 479999999999999999999997664 555
No 315
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=86.79 E-value=1.2 Score=49.84 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=62.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
-++|.|+|+|++|..+++.|.+.|. +|+ +.| .+.+++.... +.|... ...++.++.+ .+|
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~-~~d----------~~~~~~~~a~-~~g~~~-----~~~~~~~~~~-~~a 64 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVV-AVD----------RRAKSLELAV-SLGVID-----RGEEDLAEAV-SGA 64 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEE-EEE----------CChhHHHHHH-HCCCCC-----cccCCHHHHh-cCC
Confidence 3689999999999999999999883 554 566 3444444332 233210 0111122223 378
Q ss_pred eEEecccccccccccccccc----c-ceEEEecCCCC--CCHHHHHHHHHCCCceecccc
Q psy8193 302 DILIPAAIEDQITINNANNV----T-AKIILEGANGP--TTTEADDILRDKGIILAPDVI 354 (428)
Q Consensus 302 DIliPaA~~~~It~~na~~l----~-akiIvegAN~p--~t~ea~~iL~~rGI~viPD~l 354 (428)
|+++-|.....+ .+.+..+ + -.+|+..+... +..+..+.+.+..+.++|.-=
T Consensus 65 DvVilavp~~~~-~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hP 123 (735)
T PRK14806 65 DVIVLAVPVLAM-EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHP 123 (735)
T ss_pred CEEEECCCHHHH-HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCC
Confidence 999998865433 2222222 1 23666555433 233444555444566666543
No 316
>PRK06182 short chain dehydrogenase; Validated
Probab=86.72 E-value=1.2 Score=43.06 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=28.4
Q ss_pred CCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 223 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 223 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++|.|. |.+|+++++.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999997 8999999999999999997554
No 317
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.45 E-value=1.9 Score=43.26 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEecc-HHHHHHHHHHHHC----CCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKA----GAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~----GakvVaVsD~ 256 (428)
.+.|..||...+ ++++.+++|++|+|+|=+ .||+-++.+|.++ ++.| .++.+
T Consensus 133 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtV-tvchs 189 (287)
T PRK14181 133 IPCTPAGIIELL----KYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATV-TLLHS 189 (287)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEE-EEeCC
Confidence 478988887654 567999999999999985 5799999999998 7887 47765
No 318
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=86.45 E-value=1.7 Score=43.58 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=32.3
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
|+..+|.|.|.|.+|..+|+.|...|.+=+.+.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 577899999999999999999999998877788853
No 319
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=86.33 E-value=6.9 Score=39.38 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=72.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
.-++++|.|.|.-|++-++.+... ..+=|-|.| -+.++..++.++-..-.+. ..+..++.++.. .+|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~----------r~~~~a~~f~~~~~~~~~~-~v~~~~~~~eav-~~a 183 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYS----------RNFDHARAFAERFSKEFGV-DIRPVDNAEAAL-RDA 183 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHHhcCC-cEEEeCCHHHHH-hcC
Confidence 458999999999999998888763 444445666 4556655554432211011 123333234444 689
Q ss_pred eEEecccc--cccccccccccccceEEEecCCCCCCHHHHHHHHHCCCceecc
Q psy8193 302 DILIPAAI--EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPD 352 (428)
Q Consensus 302 DIliPaA~--~~~It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD 352 (428)
||++-|+. +-++..+..+. .+-+++=|++.|-..|.+.-+-++.=.|+-|
T Consensus 184 DIV~taT~s~~P~~~~~~l~p-g~hV~aiGs~~p~~~El~~~~l~~a~~v~vD 235 (301)
T PRK06407 184 DTITSITNSDTPIFNRKYLGD-EYHVNLAGSNYPNRREAEHSVLNDADIVVTE 235 (301)
T ss_pred CEEEEecCCCCcEecHHHcCC-CceEEecCCCCCCcccCCHHHHHhCCEEEEC
Confidence 99998875 45566665544 6778888999998777665444554334444
No 320
>PRK10206 putative oxidoreductase; Provisional
Probab=86.28 E-value=1.5 Score=44.71 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=59.5
Q ss_pred ceEEEEeccHHHH-HHHHHH-HH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc-cC
Q psy8193 225 SKISIQGFGNVGS-VAANLF-FK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 300 (428)
Q Consensus 225 ~~vaIqGfGnVG~-~~a~~L-~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~-~~ 300 (428)
.||+|+|+|+.+. .-+..+ .. .++.+++|+|. |.++. +..++.+ ....++|.+++|+ .+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~----------~~~~~-~~~~~~~------~~~~~~~~~ell~~~~ 64 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR----------HAKPE-EQAPIYS------HIHFTSDLDEVLNDPD 64 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcC----------ChhHH-HHHHhcC------CCcccCCHHHHhcCCC
Confidence 4899999999775 233444 33 47999999994 43332 3333332 2223333566774 57
Q ss_pred ceEEecccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHHCCCcee
Q psy8193 301 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILA 350 (428)
Q Consensus 301 ~DIliPaA~~~~It~~na~~l---~akiIvegAN~p~t~ea~~i---L~~rGI~vi 350 (428)
+|+++-|+ ++..+.+.+.+. +.-++||=.=.....|++++ .+++|+.+.
T Consensus 65 iD~V~I~t-p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 65 VKLVVVCT-HADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred CCEEEEeC-CchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 88888876 344455444332 33466764222223455443 445666543
No 321
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=86.20 E-value=1.4 Score=44.24 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~ 256 (428)
++|+|+|.|+||+.+|..|...|. .| .+.|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei-~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADEL-VLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEE-EEEeC
Confidence 379999999999999999999994 55 47784
No 322
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.17 E-value=1.7 Score=43.52 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHH----CCCEEEEEEcC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK----AGAKIVAIQDD 256 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~----~GakvVaVsD~ 256 (428)
.++|..||... +++++.+++|++++|+|= ..||+-++.+|.+ +++.|. ++++
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs 193 (286)
T PRK14184 137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHS 193 (286)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeC
Confidence 57898887655 556799999999999998 4579999999998 789884 6764
No 323
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.11 E-value=0.95 Score=42.64 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=31.9
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
++..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 678899999999999999999999998766788753
No 324
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.11 E-value=2.2 Score=41.23 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.++++++++|.|. |.+|+.+|+.|.+.|++|+ +.|
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~ 39 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLS 39 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEe
Confidence 4678999999998 7899999999999999986 555
No 325
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=86.08 E-value=0.77 Score=44.99 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=29.8
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
|+..+|+|.|.|-||+|+++.|.+-|..=+.+.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 67889999999999999999999999644456664
No 326
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.98 E-value=1.2 Score=42.38 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 219 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 219 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
+.++++++++|.|. |.+|+.+|+.|.++|++++.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 45789999999996 8999999999999999987543
No 327
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=85.95 E-value=0.97 Score=44.19 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCC----EEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 298 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Ga----kvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~ 298 (428)
..++|.|+|+|+.|+.+++-|.+.+. +++ ++|.+- +.+ +.....++.+..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~----------~~~--------------~~~~~~~~~~~~- 55 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTPSK----------KNT--------------PFVYLQSNEELA- 55 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECCCh----------hcC--------------CeEEeCChHHHH-
Confidence 45789999999999999999998762 243 445321 110 011222233443
Q ss_pred cCceEEecccccccccc---cccccccceEEEecCCCCCCHHHHHHHHH--CCCceecccc
Q psy8193 299 IPCDILIPAAIEDQITI---NNANNVTAKIILEGANGPTTTEADDILRD--KGIILAPDVI 354 (428)
Q Consensus 299 ~~~DIliPaA~~~~It~---~na~~l~akiIvegAN~p~t~ea~~iL~~--rGI~viPD~l 354 (428)
.+||++|-|.....+.. +..+.++.+.|+--+++-......+++.. +-+.++|-.-
T Consensus 56 ~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 56 KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP 116 (260)
T ss_pred HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch
Confidence 47899998865544321 22233334566776666654444555532 2345666544
No 328
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=85.90 E-value=1.8 Score=36.90 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=26.8
Q ss_pred eEEEEec-cHHHHHHHHHHHH-CCCEEEEEEcC
Q psy8193 226 KISIQGF-GNVGSVAANLFFK-AGAKIVAIQDD 256 (428)
Q Consensus 226 ~vaIqGf-GnVG~~~a~~L~~-~GakvVaVsD~ 256 (428)
+++|+|. |.+|..+++.|.+ .+.++++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec
Confidence 5899995 9999999999988 58999999764
No 329
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.52 E-value=8.3 Score=38.33 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCE-EEEE
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAK-IVAI 253 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Gak-vVaV 253 (428)
.|.+|+|.|.|.||..+++++...|++ |+++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 589999999999999999999999999 7654
No 330
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.48 E-value=1.4 Score=41.50 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++|+.|.++|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999998 8999999999999999997554
No 331
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=85.42 E-value=3.4 Score=35.55 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=54.4
Q ss_pred ceEEEEe----ccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccC
Q psy8193 225 SKISIQG----FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 300 (428)
Q Consensus 225 ~~vaIqG----fGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~ 300 (428)
++|+|+| -++.|..+.+.|.+.|.+|+.|.-..+ .+.+ .+.+++.+++ -.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~---------------------~i~G---~~~y~sl~e~-p~~ 55 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG---------------------EILG---IKCYPSLAEI-PEP 55 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS---------------------EETT---EE-BSSGGGC-SST
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce---------------------EECc---EEeeccccCC-CCC
Confidence 5899999 599999999999999999987754221 1111 1222212232 356
Q ss_pred ceEEecccccccc----cccccccccceEEEecCCCCCCHHHHHHHHHCCCcee-cc
Q psy8193 301 CDILIPAAIEDQI----TINNANNVTAKIILEGANGPTTTEADDILRDKGIILA-PD 352 (428)
Q Consensus 301 ~DIliPaA~~~~I----t~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~vi-PD 352 (428)
+|+.+-|.....+ .+--+..+++=++..| -.++++.+.+++.|+.++ |.
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 6776666543322 2211122233344444 457888999999999987 53
No 332
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.28 E-value=2.1 Score=42.41 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=27.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|++|+.+|..|...|..|+ +.|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEe
Confidence 579999999999999999999999875 667
No 333
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.23 E-value=2.3 Score=42.88 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHC----CCEEEEEEcCC
Q psy8193 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKA----GAKIVAIQDDK 257 (428)
Q Consensus 199 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----GakvVaVsD~~ 257 (428)
-.++|..||... +++++.+++|++|+|+|- .-||+-++.+|.++ ++.| .++.++
T Consensus 136 ~~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTV-tvchs~ 194 (293)
T PRK14185 136 FVSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTV-TVCHSR 194 (293)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEE-EEecCC
Confidence 357898888765 456789999999999999 45799999999988 6887 477653
No 334
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.19 E-value=2.2 Score=43.11 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHC----CCEEEEEEcCC
Q psy8193 200 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKA----GAKIVAIQDDK 257 (428)
Q Consensus 200 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----GakvVaVsD~~ 257 (428)
.++|..||...+ +++|.+++|++|+|+|= ..||+-++.+|.++ ++.| .++.++
T Consensus 141 ~PcTp~avi~lL----~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atV-tv~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQEML----VRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATV-TIVHTR 198 (297)
T ss_pred cCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEE-EEecCC
Confidence 578988887655 46799999999999998 56899999999988 6777 477653
No 335
>KOG0455|consensus
Probab=85.11 E-value=2 Score=42.45 Aligned_cols=178 Identities=17% Similarity=0.109 Sum_probs=88.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHHC------C---CEEEEEEcCCCeeeCCC----CCCHHHHHHHHHhcCCCcCCCCcee
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKA------G---AKIVAIQDDKTTIYNPN----GFNIPKLQKYVTFTRSIKDFNEGEK 289 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~------G---akvVaVsD~~G~i~n~~----GlD~~~l~~~~~~~g~l~~~~~~~~ 289 (428)
+...|+|.|.|+||+++...+... + .+||+|||+.+.+...| -++-+-.-++..++++-..+ ...
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~alsL--daL 79 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSALSL--DAL 79 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCCcccH--HHH
Confidence 346799999999999998776542 2 58999999988776444 22222222244444321111 000
Q ss_pred ccCCCcccc-cCceEEecccccccccccccccccceEEEecCCC-CC--CHHHHHHHHHC---CCceeccccccccc-hh
Q psy8193 290 INDSKEFWS-IPCDILIPAAIEDQITINNANNVTAKIILEGANG-PT--TTEADDILRDK---GIILAPDVITNAGG-VI 361 (428)
Q Consensus 290 i~~~~~il~-~~~DIliPaA~~~~It~~na~~l~akiIvegAN~-p~--t~ea~~iL~~r---GI~viPD~laNaGG-Vi 361 (428)
+ +.++. -..=||+.|+-.-.|-+---.-+.-++-+--+|- |+ |-+.-+.|... +-.+-..--.-||= +|
T Consensus 80 i---a~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVGAGLPiI 156 (364)
T KOG0455|consen 80 I---AKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVGAGLPII 156 (364)
T ss_pred H---HHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeeccccCCchhH
Confidence 1 11221 1235666666544443322222222333334444 34 34444555444 44555555554543 45
Q ss_pred hhHHHHHhhccc-------CCCCHHHHHHHHHHHHH--HHHHHHHHHHHhcCC
Q psy8193 362 VSYFEWVQNLSN-------LLWTEQEINLRLNNIIC--NAFDAIWELANTKKV 405 (428)
Q Consensus 362 ~s~~E~~qn~~~-------~~w~~e~v~~~l~~~m~--~~~~~v~~~a~~~~~ 405 (428)
++.-|.++.-.. +.=+...+...+.+--. -.|.+|.+.|++.|-
T Consensus 157 s~L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGY 209 (364)
T KOG0455|consen 157 SSLNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGY 209 (364)
T ss_pred HHHHHHHhcCCceeEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Confidence 555666542110 01122334444432211 357788888888775
No 336
>PRK12742 oxidoreductase; Provisional
Probab=84.96 E-value=4.6 Score=37.67 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=29.4
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 467899999997 999999999999999998744
No 337
>KOG2741|consensus
Probab=84.71 E-value=3.7 Score=42.16 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCceEEEEeccHHHHHHHHHHHH---CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCccc-c
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK---AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S 298 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~---~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il-~ 298 (428)
.-.|+-|.|.|..++.+++.|+. .+++||||+|. +.+..+++.++++ +|+.+.+++-++++ +
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~----------s~~~A~~fAq~~~----~~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP----------SLERAKEFAQRHN----IPNPKAYGSYEELAKD 70 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc----------cHHHHHHHHHhcC----CCCCccccCHHHHhcC
Confidence 34688999999999999998865 47999999994 5566667666653 44445555456666 4
Q ss_pred cCceEEecccccccccccccccc----cceEEEecCCCCCCHHHHHHHH---HCCCcee
Q psy8193 299 IPCDILIPAAIEDQITINNANNV----TAKIILEGANGPTTTEADDILR---DKGIILA 350 (428)
Q Consensus 299 ~~~DIliPaA~~~~It~~na~~l----~akiIvegAN~p~t~ea~~iL~---~rGI~vi 350 (428)
-+||+++-.. .+..+-+-+... |. +.||=+=.-.-+|++++++ +||+.+.
T Consensus 71 ~~vDvVyi~~-~~~qH~evv~l~l~~~K~-VL~EKPla~n~~e~~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 71 PEVDVVYIST-PNPQHYEVVMLALNKGKH-VLCEKPLAMNVAEAEEIVEAAEARGVFFM 127 (351)
T ss_pred CCcCEEEeCC-CCccHHHHHHHHHHcCCc-EEecccccCCHHHHHHHHHHHHHcCcEEE
Confidence 5688866533 444444433322 22 6677533333367777654 5786553
No 338
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=84.66 E-value=5.7 Score=40.09 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 301 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~ 301 (428)
.-.++.|.|.|..+++-++.+.. ...+-|-|.+ .+.+...++.++-..+ ++ .....++.++.+ .+|
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~----------r~~~~~~~~~~~~~~~-~~-~v~~~~~~~~av-~~a 193 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYS----------RSPERAEAFAARLRDL-GV-PVVAVDSAEEAV-RGA 193 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-----------SSHHHHHHHHHHHHCC-CT-CEEEESSHHHHH-TTS
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEc----------cChhHHHHHHHhhccc-cc-cceeccchhhhc-ccC
Confidence 34699999999999999988866 5666666777 5666666665543321 22 122333233333 479
Q ss_pred eEEeccccccc----ccccccccccceEEEecCCCCCCHHHHHHHHHCCCceeccccc
Q psy8193 302 DILIPAAIEDQ----ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 355 (428)
Q Consensus 302 DIliPaA~~~~----It~~na~~l~akiIvegAN~p~t~ea~~iL~~rGI~viPD~la 355 (428)
||++-|+.... ++.+-... .+-+++=|++.|--.|.+..+-++--.|+ |...
T Consensus 194 Dii~taT~s~~~~P~~~~~~l~~-g~hi~~iGs~~~~~~El~~~~~~~a~~~v-d~~~ 249 (313)
T PF02423_consen 194 DIIVTATPSTTPAPVFDAEWLKP-GTHINAIGSYTPGMRELDDELLKRADIVV-DSEA 249 (313)
T ss_dssp SEEEE----SSEEESB-GGGS-T-T-EEEE-S-SSTTBESB-HHHHHCSEEEE-SCHH
T ss_pred CEEEEccCCCCCCccccHHHcCC-CcEEEEecCCCCchhhcCHHHhccCCEEE-ccHH
Confidence 99999987554 66654433 57788889999976676655556655566 7664
No 339
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.65 E-value=1.5 Score=43.90 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.+++|.|+|.|++|+.+|+.|.+.|..|. +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46789999999999999999999999985 66653
No 340
>PRK06138 short chain dehydrogenase; Provisional
Probab=84.51 E-value=1.6 Score=41.06 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468899999998 9999999999999999987554
No 341
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=84.40 E-value=43 Score=35.64 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=90.2
Q ss_pred HHHHHHhcccCCCCcccCC-----CCCCCHHHHHHHHHHhhhhcCC--cC------CceeecccccCCCc-CCCCChhHH
Q psy8193 140 RYTNEISSIIGLNKDIPAP-----DVGTDMQIMSWMMDTYSTKKNY--TI------PGIVTGKPISIGGS-FGRQKATGR 205 (428)
Q Consensus 140 ~f~~~l~~~iG~~~dipap-----Dvgt~~~~ma~~~d~y~~~~g~--~~------~~~vtGkp~~~GGs-~~r~~aTg~ 205 (428)
+|-.++..+-|.-.++..+ .-|=+-+|-+.+...|..+-.. .. -.-....|+..+|+ .+.-+.-+.
T Consensus 143 SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaL 222 (429)
T PRK11891 143 SFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQAL 222 (429)
T ss_pred HHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHH
Confidence 5777777766654444221 2233567788888887543211 00 01124678888875 344444455
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEEec---cHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCH-HHHHHHHHhcCC
Q psy8193 206 GVFIIGSKIASKINLNIINSKISIQGF---GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNI-PKLQKYVTFTRS 280 (428)
Q Consensus 206 Gv~~~~~~~~~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~-~~l~~~~~~~g~ 280 (428)
.=++.+++..-.+|..++|++|++.|= +||...++..+... |++++ ++ .|.|+++ +.+.+..++.|.
T Consensus 223 aDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~-l~-------~P~~~~~~~~~~~~~~~~G~ 294 (429)
T PRK11891 223 LDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT-LV-------SPPTLEMPAYIVEQISRNGH 294 (429)
T ss_pred HHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE-EE-------CCCccccCHHHHHHHHhcCC
Confidence 555565543211232589999999999 59999999998876 99986 33 3556643 444444333321
Q ss_pred CcCCCCceeccCCCcccccCceEEecccc
Q psy8193 281 IKDFNEGEKINDSKEFWSIPCDILIPAAI 309 (428)
Q Consensus 281 l~~~~~~~~i~~~~~il~~~~DIliPaA~ 309 (428)
..+..+|.++.+ .++||++.-..
T Consensus 295 -----~v~~~~d~~eav-~~ADVVYt~~~ 317 (429)
T PRK11891 295 -----VIEQTDDLAAGL-RGADVVYATRI 317 (429)
T ss_pred -----eEEEEcCHHHHh-CCCCEEEEcCc
Confidence 112223234444 38999998443
No 342
>PRK07060 short chain dehydrogenase; Provisional
Probab=84.39 E-value=1.9 Score=40.51 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 3578899999998 8999999999999999987443
No 343
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=84.33 E-value=0.95 Score=45.73 Aligned_cols=55 Identities=20% Similarity=0.396 Sum_probs=42.8
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCee-e---CCCCCCHHHHHHHHH
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI-Y---NPNGFNIPKLQKYVT 276 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i-~---n~~GlD~~~l~~~~~ 276 (428)
-|+|++|+|+|+|+=|.+=|..|.+.|..|+ |.=..|.. + -++|+++..+.+..+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k 73 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK 73 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence 3799999999999999999999999999874 66555554 3 567887766665544
No 344
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.32 E-value=1.6 Score=40.46 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=29.8
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 467899999997 9999999999999999986444
No 345
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=84.22 E-value=2.1 Score=39.88 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++++++|.|. |.+|+++++.|.+.|++|+.+..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 467889999997 99999999999999999865654
No 346
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.21 E-value=1.5 Score=42.45 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++|+|+|.|.|+..=++.|.+.|++|+-||-
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 56899999999999999999999999999986764
No 347
>PRK06180 short chain dehydrogenase; Provisional
Probab=84.20 E-value=2.2 Score=41.33 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=27.9
Q ss_pred CCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 223 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 223 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++|.|. |.+|+++++.|.+.|++|++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEe
Confidence 4678999998 9999999999999999987554
No 348
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=84.18 E-value=2.2 Score=39.91 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.3
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.++|++|+ +.+
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~-~~~ 37 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVG-LHG 37 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEc
Confidence 567899999996 9999999999999999775 444
No 349
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.12 E-value=1.6 Score=40.88 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++++++|.|. |.+|+++++.|.++|++|+.++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 357889999995 99999999999999999976654
No 350
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=84.12 E-value=2.7 Score=41.98 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=67.2
Q ss_pred ceEEEEec-cHHHHHHHHHHHHCCCEEEEE-EcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCce
Q psy8193 225 SKISIQGF-GNVGSVAANLFFKAGAKIVAI-QDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 302 (428)
Q Consensus 225 ~~vaIqGf-GnVG~~~a~~L~~~GakvVaV-sD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~D 302 (428)
.+|+|-|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|+.++... .+.=.+......+.+++++..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~-----~v~v~~~~~~~~~l~~~~~~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK-----EILLHGPSEREARIGEVFAKYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc-----ceeeeccccccccHHHHHhhcCC
Confidence 37899999 999999999998899999987 45322 33444443221 01000001111223456655688
Q ss_pred -EEecccccccccccccccc---cceEEEecCCCCCCHHHHHHHHH---CCCceeccccc
Q psy8193 303 -ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDILRD---KGIILAPDVIT 355 (428)
Q Consensus 303 -IliPaA~~~~It~~na~~l---~akiIvegAN~p~t~ea~~iL~~---rGI~viPD~la 355 (428)
|+|.-+.+....+ |+... +..+|++-. + .+++-.+.|.+ -++++.|.+..
T Consensus 71 ~VvIDFT~P~~~~~-n~~~~~~~gv~~ViGTT-G-~~~~~~~~l~~~~~i~~l~apNfSi 127 (275)
T TIGR02130 71 LICIDYTHPSAVND-NAAFYGKHGIPFVMGTT-G-GDREALAKLVADAKHPAVIAPNMAK 127 (275)
T ss_pred EEEEECCChHHHHH-HHHHHHHCCCCEEEcCC-C-CCHHHHHHHHHhcCCCEEEECcccH
Confidence 9999887665533 33332 556666433 2 34443333333 46677777755
No 351
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.89 E-value=3.2 Score=39.40 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+ +++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVA-IAA 40 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEc
Confidence 578999999998 8999999999999999986 445
No 352
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.76 E-value=3.2 Score=40.85 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+|+.|.+.|++|+ +.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLA-LVD 40 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999997 8999999999999999986 455
No 353
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.73 E-value=1.9 Score=40.95 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=30.7
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 578999999997 9999999999999999986 4553
No 354
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=83.68 E-value=3.2 Score=42.66 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=68.8
Q ss_pred CceEEEEeccHHHHHHHHHHHHC--CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc-cC
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 300 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~--GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~-~~ 300 (428)
-.||+|+|. ..|+.-++.+.+. +++++||+| .|.++..+..++.| +. .++|.++++. .|
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d----------~~~erA~~~A~~~g-i~------~y~~~eell~d~D 64 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILA----------QGSERSRALAHRLG-VP------LYCEVEELPDDID 64 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEc----------CCHHHHHHHHHHhC-CC------ccCCHHHHhcCCC
Confidence 478999999 4688888888774 699999999 68888888887765 21 2233456663 45
Q ss_pred ceEEe-cccccccccccccccc---cceEEEecCCCCCC-HHHHHH---HHHCCCcee
Q psy8193 301 CDILI-PAAIEDQITINNANNV---TAKIILEGANGPTT-TEADDI---LRDKGIILA 350 (428)
Q Consensus 301 ~DIli-PaA~~~~It~~na~~l---~akiIvegAN~p~t-~ea~~i---L~~rGI~vi 350 (428)
+|+++ |.+..+..+.+.+... +.-++||= |++ .||+++ -+++|+.+.
T Consensus 65 i~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK---Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 65 IACVVVRSAIVGGQGSALARALLARGIHVLQEH---PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred EEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC---CCCHHHHHHHHHHHHHcCCEEE
Confidence 55444 4344555555555443 44688875 554 455543 456777765
No 355
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.65 E-value=1.6 Score=46.10 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.3
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
+.+++|.|.|+|.-|..+|++|.+.|++| .++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V-~~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKV-TAFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEE-EEECCC
Confidence 56789999999999999999999999987 589853
No 356
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.64 E-value=1.2 Score=45.22 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.5
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCC-CEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~G-akvVaVsD~ 256 (428)
.+.++|+|+|.|+||+.++..|...| .. +.+.|.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 35679999999999999999998888 56 457784
No 357
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=83.62 E-value=3.3 Score=39.65 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.++++++++|.|. +.+|+++|+.|.+.|++|+.+++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 3688999999998 88999999999999999875544
No 358
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.60 E-value=3.7 Score=41.27 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=26.4
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC-EEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~ 256 (428)
++|+|+|.|.||..+|..|...|. .-+.+.|.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 479999999999999999999993 33457773
No 359
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.58 E-value=1.7 Score=41.21 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=27.9
Q ss_pred CceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 224 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 224 g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
+++++|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 468999997 89999999999999999986553
No 360
>PRK06849 hypothetical protein; Provisional
Probab=83.56 E-value=1.9 Score=44.44 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=28.5
Q ss_pred CCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEcC
Q psy8193 223 INSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD~ 256 (428)
+.++|.|.|.+. +|..+++.|.+.|.+|+++ |+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~-d~ 36 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILA-DS 36 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence 468999999975 8999999999999999855 54
No 361
>PLN02602 lactate dehydrogenase
Probab=83.54 E-value=2.2 Score=44.01 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=25.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC-EEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~ 256 (428)
++|+|+|.|+||+.+|..|...+. .-+.+.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999887774 22347774
No 362
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=83.51 E-value=2.1 Score=43.22 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.5
Q ss_pred CCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 219 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 219 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
|.+.++++|+|.|. |-+|+++++.|.+.|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 44678999999995 99999999999999999987654
No 363
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.48 E-value=1.9 Score=45.30 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=30.9
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
++++++.|.|.|..|..+|++|.+.|++|+ ++|.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~ 36 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDA 36 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 578899999999999999999999999985 6775
No 364
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.42 E-value=1.6 Score=49.06 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=27.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|..+|..+...|..|+ +.|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEe
Confidence 579999999999999999999999985 777
No 365
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.41 E-value=3.4 Score=41.27 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.8
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
-.+|.|.|.|.+|+++|+.|.+.|..+ .|.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g 33 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV-RIIG 33 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE-EEEe
Confidence 468999999999999999999999877 3444
No 366
>PLN02206 UDP-glucuronate decarboxylase
Probab=83.39 E-value=1.8 Score=45.80 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=32.1
Q ss_pred hCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 218 INLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 218 ~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
+|+.-++++|+|.|. |-||+++++.|.++|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 355568899999996 9999999999999999998664
No 367
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.37 E-value=2 Score=43.39 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=25.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC--EEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga--kvVaVsD~ 256 (428)
.+|+|+|.|+||+.+|..|...|. .+ .+.|.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el-~LiD~ 36 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADEL-VLVDV 36 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEE-EEEeC
Confidence 589999999999999999887774 34 46673
No 368
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.35 E-value=1.8 Score=46.16 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=31.1
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+.+++|.|.|+|..|..+|++|.+.|++| .++|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V-~~~D~ 46 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDV-VVADD 46 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEE-EEECC
Confidence 467889999999999999999999999976 58884
No 369
>PRK05876 short chain dehydrogenase; Provisional
Probab=83.30 E-value=3.3 Score=40.39 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+++|+.|.+.|++|+ ++|
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~ 37 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGD 37 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 468899999986 8999999999999999986 556
No 370
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.24 E-value=3.3 Score=46.63 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.6
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|..+|..+...|..|+ +.|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d 343 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKD 343 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEe
Confidence 479999999999999999999999985 777
No 371
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.16 E-value=2.2 Score=40.12 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=29.7
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999997 9999999999999999986443
No 372
>PLN02240 UDP-glucose 4-epimerase
Probab=83.04 E-value=2.1 Score=42.85 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++|+|.|. |.+|+++++.|.+.|.+|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578899999987 9999999999999999998665
No 373
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.02 E-value=1.9 Score=46.17 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
++++++|.|.|+|..|..+|++|.+.|++| .++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v-~~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARL-RVADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEE-EEEcCC
Confidence 356789999999999999999999999997 478864
No 374
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.01 E-value=1.9 Score=45.49 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=31.1
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+++++|.|.|+|.-|..+|++|.+.|++| .++|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v-~~~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEV-IAWDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEE-EEECC
Confidence 67889999999999999999999999987 58995
No 375
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=82.86 E-value=2.4 Score=42.92 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=28.2
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
-++|+|+|.|.+|+..|..++..|..|+ +.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence 4689999999999999999988778885 78843
No 376
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=82.83 E-value=67 Score=33.80 Aligned_cols=171 Identities=13% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCCCceeE-EecCCCCCCHHHHHHHHHHHHHHHhcccCCCCcccCCC----CCCCHHHHHHHHHHhhhhcCCcCC-----
Q psy8193 114 PYGGAKGG-IRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPD----VGTDMQIMSWMMDTYSTKKNYTIP----- 183 (428)
Q Consensus 114 p~GGaKgg-I~~dP~~~s~~ele~~~r~f~~~l~~~iG~~~dipapD----vgt~~~~ma~~~d~y~~~~g~~~~----- 183 (428)
+++|.+.. +-+.|..-++ -+|-.++..+-|.-.++.+.+ .|=+-.|-+.+...|..+-....+
T Consensus 56 ~L~~~~~~~lF~epSTRTR-------~SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y~D~IviR~~~~~g~ 128 (395)
T PRK07200 56 VFNSGLGISVFRDNSTRTR-------FSYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFMADVIGIRDDMYIGK 128 (395)
T ss_pred cccCCeEEEEEcCCCchhH-------HHHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHhCCEEEEecCccccc
Confidence 46777775 5667764332 256667766666544443333 233567777877777443211110
Q ss_pred ce---------e---------ecc-cccCCCcCCCCChhHHHHHHHHHHHHHHhCC--CCCCceEEEEec-----c---H
Q psy8193 184 GI---------V---------TGK-PISIGGSFGRQKATGRGVFIIGSKIASKINL--NIINSKISIQGF-----G---N 234 (428)
Q Consensus 184 ~~---------v---------tGk-p~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~--~l~g~~vaIqGf-----G---n 234 (428)
+. . ... |+..+++.+.-+.-+..=++.+++ ++|. .++|++|+|.|- | |
T Consensus 129 ~~~~~~ela~~~~~~~~~~~~~~~pPVINa~~~~~HPtQaLaDl~TI~E---~~G~~~~l~g~kVaivg~~~~~~g~~~~ 205 (395)
T PRK07200 129 GNAYMREVGAAVDDGYKQGVLPQRPTLVNLQCDIDHPTQSMADLLHLIE---HFGGLENLKGKKIAMTWAYSPSYGKPLS 205 (395)
T ss_pred ccHHHHHHHHHhhhhcccccccCCCeEEECCCCCCCcHHHHHHHHHHHH---HhCCCcccCCCEEEEEeccccccCCcch
Confidence 00 0 123 354444433334444444555554 4564 489999999985 5 7
Q ss_pred HHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCH-HHHHHH----HHhcCCCcCCCCceeccCCCcccccCceEEeccc
Q psy8193 235 VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI-PKLQKY----VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 308 (428)
Q Consensus 235 VG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~-~~l~~~----~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA 308 (428)
|...++..+...|+.|. ++- |.|+++ +++.+. .++.|. ..+..+|.++.+ .++||+..-.
T Consensus 206 Va~Sl~~~~~~lG~~v~-~~~-------P~~~~~~~~i~~~a~~~~~~~G~-----~i~~~~d~~eav-~~aDvVYtd~ 270 (395)
T PRK07200 206 VPQGIIGLMTRFGMDVT-LAH-------PEGYDLMPEVVEVAKKNAKASGG-----SFRQVNSMEEAF-KDADIVYPKS 270 (395)
T ss_pred HHHHHHHHHHHcCCEEE-EEC-------CCccCCCHHHHHHHHHHHHHcCC-----eEEEEcCHHHHh-CCCCEEEEcC
Confidence 88999999999999985 433 455533 333332 223331 012223233443 3788888864
No 377
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=82.80 E-value=2.3 Score=40.06 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
+++++++|.|. |.+|+.+|+.|.+.|++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999997 99999999999999999976554
No 378
>PRK06194 hypothetical protein; Provisional
Probab=82.79 E-value=3.5 Score=39.90 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~-~~~ 37 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLV-LAD 37 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEE-EEe
Confidence 467889999997 8999999999999999986 445
No 379
>PRK06841 short chain dehydrogenase; Provisional
Probab=82.59 E-value=2.3 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578999999996 9999999999999999987543
No 380
>PRK07774 short chain dehydrogenase; Provisional
Probab=82.44 E-value=2.4 Score=39.94 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.+++++++|.|. |-+|+++++.|.++|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999998 999999999999999999754
No 381
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=82.43 E-value=3.7 Score=42.07 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=48.6
Q ss_pred ceEEEEec-cHHHHHHHHHHHHC-CCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCC--ceeccCCCcccccC
Q psy8193 225 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE--GEKINDSKEFWSIP 300 (428)
Q Consensus 225 ~~vaIqGf-GnVG~~~a~~L~~~-GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~--~~~i~~~~~il~~~ 300 (428)
++|+|.|. |-||+.++++|.+. +.+++++.+++. ..|-.+... ...+..... .+..+ .++++. +
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~----sagk~~~~~------~~~l~~~~~~~~~~~~-~~~~~~-~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE----SAGKPVSEV------HPHLRGLVDLNLEPID-EEEIAE-D 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch----hcCCChHHh------CccccccCCceeecCC-HHHhhc-C
Confidence 47999998 99999999999886 788887766531 122111111 111111101 11112 333443 7
Q ss_pred ceEEecccccccccccccccc
Q psy8193 301 CDILIPAAIEDQITINNANNV 321 (428)
Q Consensus 301 ~DIliPaA~~~~It~~na~~l 321 (428)
+|+++-|. ++..+.+-+..+
T Consensus 69 ~DvVf~al-P~~~s~~~~~~~ 88 (346)
T TIGR01850 69 ADVVFLAL-PHGVSAELAPEL 88 (346)
T ss_pred CCEEEECC-CchHHHHHHHHH
Confidence 99999887 444566666554
No 382
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.34 E-value=2.4 Score=39.59 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++|.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 367899999998 8899999999999999997553
No 383
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=82.30 E-value=7.8 Score=39.77 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=66.2
Q ss_pred ecccccCCCcC-CCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec---cHHHHHHHHHHHH-CCCEEEEEEcCCCeee
Q psy8193 187 TGKPISIGGSF-GRQKATGRGVFIIGSKIASKINLNIINSKISIQGF---GNVGSVAANLFFK-AGAKIVAIQDDKTTIY 261 (428)
Q Consensus 187 tGkp~~~GGs~-~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~-~GakvVaVsD~~G~i~ 261 (428)
...|+..+|+. +.-+--+..=++.+++.+.+.|.+++|++|++.|= +||...++..|.. .|..++-++
T Consensus 121 ~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~------- 193 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVS------- 193 (338)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEEC-------
Confidence 35688888874 44455566666666654433455789999999999 5899998888764 488885333
Q ss_pred CCCCCC-HHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEeccc
Q psy8193 262 NPNGFN-IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 308 (428)
Q Consensus 262 n~~GlD-~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA 308 (428)
|.|+. ++.+.+..++.|. ..+..+|.++.+ .++||++.-.
T Consensus 194 -P~~~~~~~~~~~~~~~~g~-----~~~~~~d~~ea~-~~aDvvyt~~ 234 (338)
T PRK08192 194 -PKELAMPDYVISDIENAGH-----KITITDQLEGNL-DKADILYLTR 234 (338)
T ss_pred -CccccCCHHHHHHHHHcCC-----eEEEEcCHHHHH-ccCCEEEEcC
Confidence 45553 2344444333221 122223233444 3899999854
No 384
>PRK07825 short chain dehydrogenase; Provisional
Probab=82.21 E-value=4.2 Score=39.14 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+ +++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~ 36 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGD 36 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEE
Confidence 467899999998 8999999999999999986 444
No 385
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.20 E-value=2.6 Score=39.55 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+. .|
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~-~~ 36 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLAL-ID 36 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-Ee
Confidence 367899999998 99999999999999999864 45
No 386
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=82.03 E-value=8.9 Score=38.71 Aligned_cols=152 Identities=11% Similarity=0.094 Sum_probs=84.2
Q ss_pred HHHHHHhcccCCCCcccC-CC--CCC--CHHHHHHHHHHhhhhcCC--c------CCceeecccccCCCcC-CCCChhHH
Q psy8193 140 RYTNEISSIIGLNKDIPA-PD--VGT--DMQIMSWMMDTYSTKKNY--T------IPGIVTGKPISIGGSF-GRQKATGR 205 (428)
Q Consensus 140 ~f~~~l~~~iG~~~dipa-pD--vgt--~~~~ma~~~d~y~~~~g~--~------~~~~vtGkp~~~GGs~-~r~~aTg~ 205 (428)
+|-.++..+-|.-..+.. .+ ++. +-+|.+.+...|...-.. . .-.-..+.|+..+|+. +.-+.-+.
T Consensus 56 SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~L 135 (301)
T TIGR00670 56 SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTL 135 (301)
T ss_pred HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHH
Confidence 455555555554333333 11 222 346666666666332110 0 0011245788777774 33444444
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEEecc---HHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCC-HHHHHHHHHhcCCC
Q psy8193 206 GVFIIGSKIASKINLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFN-IPKLQKYVTFTRSI 281 (428)
Q Consensus 206 Gv~~~~~~~~~~~g~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD-~~~l~~~~~~~g~l 281 (428)
.=++.+++ +.| +++|++|++.|=+ ||...++..+...|+.|. ++ .|.|++ ++.+.+..++.|.
T Consensus 136 aDl~Ti~e---~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~-~~-------~P~~~~~~~~~~~~~~~~G~- 202 (301)
T TIGR00670 136 LDLYTIYE---EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVY-LI-------SPEELRMPKEILEELKAKGI- 202 (301)
T ss_pred HHHHHHHH---HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEE-EE-------CCccccCCHHHHHHHHHcCC-
Confidence 44555554 345 6899999999995 999999999999999985 33 355663 3444444333220
Q ss_pred cCCCCceeccCCCcccccCceEEecccc
Q psy8193 282 KDFNEGEKINDSKEFWSIPCDILIPAAI 309 (428)
Q Consensus 282 ~~~~~~~~i~~~~~il~~~~DIliPaA~ 309 (428)
..+..+|.++.+ .++||+..-..
T Consensus 203 ----~v~~~~d~~~a~-~~aDvvyt~~~ 225 (301)
T TIGR00670 203 ----KVRETESLEEVI-DEADVLYVTRI 225 (301)
T ss_pred ----EEEEECCHHHHh-CCCCEEEECCc
Confidence 111223233333 38899988543
No 387
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=81.97 E-value=2.6 Score=43.14 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.5
Q ss_pred ceEEEEec-cHHHHHHHHHHHHC-CCEEEEEEcC
Q psy8193 225 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGf-GnVG~~~a~~L~~~-GakvVaVsD~ 256 (428)
++|+|.|. |.||+.+++.|.+. +.+++++++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 68999997 99999999999886 7899999884
No 388
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=81.93 E-value=5.9 Score=41.03 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=28.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHC-----CCEEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~-----GakvVaVsD~ 256 (428)
.||+|-|||-+|+.++|.+.+. ...||+|-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 5899999999999999998764 5799999984
No 389
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.86 E-value=4.1 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv-~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVA-LAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 478899999997 8999999999999999987 445
No 390
>PRK12829 short chain dehydrogenase; Provisional
Probab=81.85 E-value=2.3 Score=40.35 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++++|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 478899999998 9999999999999999986443
No 391
>PRK08263 short chain dehydrogenase; Provisional
Probab=81.85 E-value=3.3 Score=40.03 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=27.4
Q ss_pred CCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 223 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 223 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++|.|. |-+|+++++.|.+.|++|+.+.
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~ 34 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATA 34 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEE
Confidence 4678999996 9999999999999999986443
No 392
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.84 E-value=2.5 Score=40.03 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++++|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~ 38 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIAD 38 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 467899999998 9999999999999999987443
No 393
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.75 E-value=2.7 Score=39.78 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.4
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 578999999997 9999999999999999987553
No 394
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.75 E-value=2.7 Score=40.10 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=29.9
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~ 37 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV 37 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 4578999999998 789999999999999998644
No 395
>PRK09186 flagellin modification protein A; Provisional
Probab=81.65 E-value=2.5 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=28.9
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
+++++++|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999998 899999999999999998755
No 396
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.64 E-value=3.7 Score=46.46 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=27.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|+|+|.|.+|+.+|..+...|..|+ +.|
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d 365 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKD 365 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-Eec
Confidence 579999999999999999999999986 777
No 397
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=81.56 E-value=1.8 Score=43.40 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
...++|+|.|.|.+|..+|..|++.|..|+.++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 4557899999999999999999999998875543
No 398
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.51 E-value=4.3 Score=45.59 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=26.3
Q ss_pred ceEEEEeccHHHHHHHHHHH-HCCCEEEEEEc
Q psy8193 225 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQD 255 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~-~~GakvVaVsD 255 (428)
++|+|+|.|.+|+.+|..+. ..|..|+ +.|
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d 335 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKD 335 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEe
Confidence 47999999999999999887 5899885 777
No 399
>PRK06523 short chain dehydrogenase; Provisional
Probab=81.45 E-value=2.4 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=30.8
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++|++++|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 3678999999997 8999999999999999987554
No 400
>PRK07589 ornithine cyclodeaminase; Validated
Probab=81.27 E-value=19 Score=37.07 Aligned_cols=149 Identities=14% Similarity=0.097 Sum_probs=82.5
Q ss_pred ecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCC
Q psy8193 187 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNG 265 (428)
Q Consensus 187 tGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~G 265 (428)
||.|..+ .+-...|++=...+---+++.+..+ .-.+++|+|.|..+++-++.+.. ...+=|-|.+
T Consensus 96 TG~p~Al---ldg~~lT~~RTaA~sala~~~Lar~-da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~---------- 161 (346)
T PRK07589 96 TGYPLLL---SEMTLLTALRTAATSALAAKYLARP-DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYD---------- 161 (346)
T ss_pred CCCEEEE---EcCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe----------
Confidence 5666532 2233344443333333333443322 45789999999999998887765 3344444555
Q ss_pred CCHHHHHHHHHhcCCCcCCCCceeccCCCcccccCceEEeccccc----ccccccccccccceEEEecCCCCCCHHHHHH
Q psy8193 266 FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE----DQITINNANNVTAKIILEGANGPTTTEADDI 341 (428)
Q Consensus 266 lD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~~~~DIliPaA~~----~~It~~na~~l~akiIvegAN~p~t~ea~~i 341 (428)
.+.+...++.++-.. .++ .....++.++.. .++||++-|+.. -++..+.. +=.+-+++=|++.|-..|.+.-
T Consensus 162 r~~~~a~~~~~~~~~-~~~-~v~~~~~~~~av-~~ADIIvtaT~S~~~~Pvl~~~~l-kpG~hV~aIGs~~p~~~Eld~~ 237 (346)
T PRK07589 162 IDPAATAKLARNLAG-PGL-RIVACRSVAEAV-EGADIITTVTADKTNATILTDDMV-EPGMHINAVGGDCPGKTELHPD 237 (346)
T ss_pred CCHHHHHHHHHHHHh-cCC-cEEEeCCHHHHH-hcCCEEEEecCCCCCCceecHHHc-CCCcEEEecCCCCCCcccCCHH
Confidence 455666555543221 111 122233233333 479999988853 23555433 2256788889999987777654
Q ss_pred HHHCCCceecccc
Q psy8193 342 LRDKGIILAPDVI 354 (428)
Q Consensus 342 L~~rGI~viPD~l 354 (428)
+-++.-+|+ |..
T Consensus 238 ~l~~a~v~v-D~~ 249 (346)
T PRK07589 238 ILRRARVFV-EYE 249 (346)
T ss_pred HHhcCEEEE-CCH
Confidence 444443444 654
No 401
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=81.24 E-value=45 Score=34.27 Aligned_cols=39 Identities=0% Similarity=-0.130 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy8193 385 LNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAH 423 (428)
Q Consensus 385 l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv~~a~ 423 (428)
+-.+......+.+..+++.+.++++.+..++.+=+..+.
T Consensus 207 l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a 245 (342)
T PRK12557 207 VTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMA 245 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 455555677788888999999999999988877665443
No 402
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=81.23 E-value=2.4 Score=42.68 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
+++++|+|.|. |-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46899999997 9999999999999999998664
No 403
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.11 E-value=2.7 Score=39.48 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 478899999997 8999999999999999987543
No 404
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=81.10 E-value=2.5 Score=43.62 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~ 256 (428)
+=+-.||-++|.|..|+.++-.... .|..+|+|||.
T Consensus 14 ~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~ 50 (438)
T COG4091 14 EGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDR 50 (438)
T ss_pred cCCceEEEEecccccchHHHHHHhhcCCceEEEEecc
Confidence 3366899999999999998876655 69999999993
No 405
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=81.09 E-value=70 Score=32.83 Aligned_cols=110 Identities=6% Similarity=-0.022 Sum_probs=68.4
Q ss_pred HHHHHHhcccCCCCcccCCC----------------CCCCHHHHHHHHHHhhhhcCCcCC--c----------------e
Q psy8193 140 RYTNEISSIIGLNKDIPAPD----------------VGTDMQIMSWMMDTYSTKKNYTIP--G----------------I 185 (428)
Q Consensus 140 ~f~~~l~~~iG~~~dipapD----------------vgt~~~~ma~~~d~y~~~~g~~~~--~----------------~ 185 (428)
+|-.++..+-|.-.++...+ .|=+-+|.+.+...|..+-....+ + -
T Consensus 55 SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~~~~~kgEsl~Dtarvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~ 134 (335)
T PRK04523 55 SFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAK 134 (335)
T ss_pred HHHHHHHHcCCeEEEeCcccccchhhcccccccCCCCCcCHHHHHHHHHHhCcEEEEeCCccccccccchhHHHHHHHHH
Confidence 57777777666544443332 234567888888888543221101 0 1
Q ss_pred eecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCC-CCceEEEEecc-------HHHHHHHHHHHHCCCEEEEEEc
Q psy8193 186 VTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNI-INSKISIQGFG-------NVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 186 vtGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l-~g~~vaIqGfG-------nVG~~~a~~L~~~GakvVaVsD 255 (428)
....|+..+|+. .-+.-+..=++++++ +.| ++ +|++|+|.+.| +|...++..+...|+.++ ++-
T Consensus 135 ~s~vPVINa~~~-~HPtQaLaDl~Ti~e---~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~-~~~ 206 (335)
T PRK04523 135 YSTVPVINMETI-THPCQELAHALALQE---HFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVT-LLC 206 (335)
T ss_pred hCCCCEEECCCC-CChHHHHHHHHHHHH---HhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEE-EEC
Confidence 135788777775 444444444555554 345 47 89999887653 789999999999999985 443
No 406
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.96 E-value=3 Score=39.92 Aligned_cols=34 Identities=21% Similarity=0.518 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 467889999996 9999999999999999987544
No 407
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=80.87 E-value=4.9 Score=38.12 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.1
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-IND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEc
Confidence 578999999997 8999999999999999987 455
No 408
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.85 E-value=2.6 Score=44.03 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+..+|.|.|+|..|..+|++|.+.|++|+ ++|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeC
Confidence 44689999999999999999999999874 6775
No 409
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.81 E-value=2.5 Score=42.32 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCCCCceEEEEecc---HHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++|++++|.|.| -+|+.+|+.|.+.|++|| |.|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 47899999999997 799999999999999996 555
No 410
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.71 E-value=2.9 Score=39.63 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVAD 38 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 478899999997 8999999999999999987543
No 411
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.58 E-value=3.3 Score=41.85 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=24.5
Q ss_pred eEEEEeccHHHHHHHHHHHHCCC-EEEEEEcC
Q psy8193 226 KISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 256 (428)
Q Consensus 226 ~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~ 256 (428)
+|+|+|.|+||+.+|..|...+. .-+.+.|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 58999999999999999988774 32346773
No 412
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=80.46 E-value=7.1 Score=33.95 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred cCCCCChhHHHHHHHHHHHHHHh-CCCCCCceEEEEe--------ccHHHHHHHHHHHHCCCEEEEEEcCCCe
Q psy8193 196 SFGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQG--------FGNVGSVAANLFFKAGAKIVAIQDDKTT 259 (428)
Q Consensus 196 s~~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakvVaVsD~~G~ 259 (428)
-.|+...|-|....+.+.+.+.. .+.++...|.|-| .|.-...+.+.|.+.|.+|+.|.|..-.
T Consensus 37 ~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpi 109 (114)
T TIGR03628 37 KADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 109 (114)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 34678889999888888877654 3457888999999 6787888999999999999999996543
No 413
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.41 E-value=2.7 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
+++++++|.|. |.+|.++++.|.+.|++|+.+.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLG 43 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEe
Confidence 68999999987 8999999999999999997443
No 414
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.40 E-value=3.1 Score=39.16 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=29.3
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
+++++++|.|. |.+|+.+++.|.+.|++|+.+.+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~ 36 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYA 36 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999998 89999999999999999875444
No 415
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.38 E-value=5.2 Score=40.70 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=29.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
.|.+|+|.|.|.||..+++++...|++|+++.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 688999999999999999999999999876654
No 416
>PRK05875 short chain dehydrogenase; Provisional
Probab=80.26 E-value=3.2 Score=39.89 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=30.3
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999997 8999999999999999987554
No 417
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=80.25 E-value=2.7 Score=42.49 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
+-++.++|+|.|. |-+|+++++.|.++|.+|+++..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3568899999997 99999999999999999987754
No 418
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.23 E-value=3 Score=39.26 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++++++|.|. |.+|+++++.|.++|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 357789999995 89999999999999999975443
No 419
>PRK06057 short chain dehydrogenase; Provisional
Probab=80.11 E-value=3.1 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.++|++|+|.|. |.+|.++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 378999999999 999999999999999998644
No 420
>KOG2653|consensus
Probab=80.10 E-value=1.8 Score=44.74 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=65.3
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCce----eccCCCccc---
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE----KINDSKEFW--- 297 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~----~i~~~~~il--- 297 (428)
.++.++|++-+|++++.-+.++|..|. +..+ .=--+++.++-..+...+.+....+ .+..|-.++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~-~yNR-------T~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVC-AYNR-------TTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEE-Eecc-------chHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEe
Confidence 568899999999999999999999984 4333 2223344444433433344332111 011122211
Q ss_pred --ccCceEEecccccccccccccccccceEEEecCCCCC--CHHHHHHHHHCCCcee
Q psy8193 298 --SIPCDILIPAAIEDQITINNANNVTAKIILEGANGPT--TTEADDILRDKGIILA 350 (428)
Q Consensus 298 --~~~~DIliPaA~~~~It~~na~~l~akiIvegAN~p~--t~ea~~iL~~rGI~vi 350 (428)
..++|.+|..-.+..- +-.+|++|.|.-. |..-.+.|.++||+++
T Consensus 79 kAG~pVD~~I~~L~p~Le--------kgDiIIDGGNs~y~dT~RR~~el~k~Gilfv 127 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLE--------KGDIIIDGGNSEYQDTERRCRELAKKGILFV 127 (487)
T ss_pred eCCCcHHHHHHHHHhhcC--------CCCEEEeCCcccCcchHHHHHHHHhcCcEEE
Confidence 2345555543332222 4459999999986 4455577899999886
No 421
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=80.07 E-value=3.7 Score=39.22 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+++|+.|.++|++|+.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 578999999997 88999999999999999875544
No 422
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.90 E-value=3.2 Score=39.10 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.9
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
+++++++|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 56789999995 9999999999999999987553
No 423
>PRK07236 hypothetical protein; Provisional
Probab=79.86 E-value=3.1 Score=42.60 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=33.8
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNP 263 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~ 263 (428)
+++..+|+|+|.|.+|..+|..|.+.|.+|+ |.|..-....+
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 3566899999999999999999999999985 88865433333
No 424
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.83 E-value=3.3 Score=38.48 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++.+++++|.|. |.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999997 9999999999999999976444
No 425
>KOG0029|consensus
Probab=79.82 E-value=2.4 Score=45.81 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.5
Q ss_pred CCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
..+.++|+|+|.|--|..+|+.|++.|.+|+ |-+.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEA 46 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEA 46 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEec
Confidence 3466799999999999999999999999975 7765
No 426
>KOG1207|consensus
Probab=79.76 E-value=5.1 Score=37.79 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=32.8
Q ss_pred CCCCCceEEEEeccH-HHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakvVaVsD 255 (428)
.+|.|+.|.+.|.|. +|+.+++.|+..|++||+|+-
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR 39 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVAR 39 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEec
Confidence 468999999999874 899999999999999999996
No 427
>PRK08264 short chain dehydrogenase; Validated
Probab=79.75 E-value=3.3 Score=38.80 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCC-EEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGA-KIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~Ga-kvVaVs 254 (428)
++++++++|.|. |.+|+++|+.|.++|+ +|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 467889999996 9999999999999999 776444
No 428
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.66 E-value=4.8 Score=38.45 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=28.7
Q ss_pred CCCceEEEEec-c-HHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-G-NVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-G-nVG~~~a~~L~~~GakvVaVsD 255 (428)
+++++++|.|. | .+|+.+++.|.++|++|+ +.|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEe
Confidence 57899999997 6 699999999999999976 555
No 429
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.64 E-value=3.4 Score=39.16 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
..+++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 3578999999998 8999999999999999987443
No 430
>PRK06398 aldose dehydrogenase; Validated
Probab=79.62 E-value=3.3 Score=39.72 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
+++|++++|.|. |-+|+.+|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 578999999997 7899999999999999997544
No 431
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=79.61 E-value=3.2 Score=39.62 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
+++|++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 578999999998 789999999999999999855
No 432
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=79.58 E-value=10 Score=38.47 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=33.4
Q ss_pred HHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 215 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 215 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
+...+....|.+|+|.|.|.||..+++++...|++++.+++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444444788999999999999999999999999876665
No 433
>PRK07890 short chain dehydrogenase; Provisional
Probab=79.52 E-value=3 Score=39.50 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+++++++|.|. |.+|+++|+.|.++|++|+ +.++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 57899999997 8999999999999999986 5553
No 434
>PLN02775 Probable dihydrodipicolinate reductase
Probab=79.41 E-value=3.7 Score=41.20 Aligned_cols=113 Identities=15% Similarity=0.223 Sum_probs=67.8
Q ss_pred CceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHH-HHHHHHHhcCCCcCCCCceec--cCCCccc-c
Q psy8193 224 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP-KLQKYVTFTRSIKDFNEGEKI--NDSKEFW-S 298 (428)
Q Consensus 224 g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~-~l~~~~~~~g~l~~~~~~~~i--~~~~~il-~ 298 (428)
-.+|+|-|+ |++|+.+++.+.+.+..+|+..|... +|-|+. ++.. . +.... +|.++.+ +
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~-----~~~~~~~~~~g----------~-~v~~~~~~dl~~~l~~ 74 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGP-----AGVGVTVEVCG----------V-EVRLVGPSEREAVLSS 74 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEecccc-----ccccccceecc----------c-eeeeecCccHHHHHHH
Confidence 368999999 99999999999889999999888643 333322 1111 1 11222 2233444 3
Q ss_pred c---Cce-EEecccccccccccccc---cccceEEEecCCCCCCHHHHHHHHHC---CCceeccccc
Q psy8193 299 I---PCD-ILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDILRDK---GIILAPDVIT 355 (428)
Q Consensus 299 ~---~~D-IliPaA~~~~It~~na~---~l~akiIvegAN~p~t~ea~~iL~~r---GI~viPD~la 355 (428)
. .+| |+|.-+.+....+ |+. +-+.++|++=.. ++++-.+.+.+. ++++.|.+..
T Consensus 75 ~~~~~~~~VvIDFT~P~a~~~-~~~~~~~~g~~~VvGTTG--~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 75 VKAEYPNLIVVDYTLPDAVND-NAELYCKNGLPFVMGTTG--GDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred hhccCCCEEEEECCChHHHHH-HHHHHHHCCCCEEEECCC--CCHHHHHHHHhcCCccEEEECcccH
Confidence 3 688 8998886655433 333 336677776443 344433333333 6677777655
No 435
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.39 E-value=3.5 Score=39.47 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+++++.|.+.|++|+. .+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~ 36 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAV-LD 36 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEE-Ee
Confidence 367899999997 78999999999999999874 44
No 436
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=79.38 E-value=2.9 Score=42.85 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 223 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 223 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++|+|.|. |.||+++++.|.+.|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 6789999998 9999999999999999998775
No 437
>KOG2336|consensus
Probab=79.33 E-value=2.8 Score=42.00 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=34.9
Q ss_pred HHHHHHhCC-----CCCCceEEEEeccHHHHHHHHHHHHCCC-EEEEEEc
Q psy8193 212 SKIASKINL-----NIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 255 (428)
Q Consensus 212 ~~~~~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD 255 (428)
.-+++++|+ .+....|+|.|.|.||+-+|++|.+.|. |++ ..|
T Consensus 65 LMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfD 113 (422)
T KOG2336|consen 65 LMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFD 113 (422)
T ss_pred HHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eee
Confidence 346778887 2678899999999999999999999984 554 555
No 438
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=79.32 E-value=3.1 Score=37.35 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=27.5
Q ss_pred EEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 227 ISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 227 vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
|+|.|. |.+|+.+++.|.+.|++|++++-+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 688996 999999999999999999999874
No 439
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=79.22 E-value=3.5 Score=39.43 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
....++|+|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 456789999996 99999999999999999987764
No 440
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.16 E-value=14 Score=38.80 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=101.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcC-----C-----CCce-eccCC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F-----NEGE-KINDS 293 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~-----~-----~~~~-~i~~~ 293 (428)
++|.|.|.|=||...+-.|++.|..|| ..| +|..++..+.+..-.+.+ + ..++ ..++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv-~vD----------id~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVV-CVD----------IDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEE-EEe----------CCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcC
Confidence 589999999999999999999999997 457 666666555432111100 0 0010 11101
Q ss_pred CcccccCceEEecccccccccccccccc---------------cceEEEecCCCCC--CHHHHHHHHHCC------Ccee
Q psy8193 294 KEFWSIPCDILIPAAIEDQITINNANNV---------------TAKIILEGANGPT--TTEADDILRDKG------IILA 350 (428)
Q Consensus 294 ~~il~~~~DIliPaA~~~~It~~na~~l---------------~akiIvegAN~p~--t~ea~~iL~~rG------I~vi 350 (428)
-+---.++||.+-|..+..-. ++...+ +.++||-=.--|+ |.+-.+.+.+.. |..-
T Consensus 70 ~~~a~~~adv~fIavgTP~~~-dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N 148 (414)
T COG1004 70 YEEAVKDADVVFIAVGTPPDE-DGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN 148 (414)
T ss_pred HHHHHhcCCEEEEEcCCCCCC-CCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC
Confidence 111123778888776544432 221111 3478888777785 566666666665 7777
Q ss_pred ccccccccch-------------hh-hHHHHHhhc------ccC-----CCCHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy8193 351 PDVITNAGGV-------------IV-SYFEWVQNL------SNL-----LWTEQEI-----NLRLNNIICNAFDAIWELA 400 (428)
Q Consensus 351 PD~laNaGGV-------------i~-s~~E~~qn~------~~~-----~w~~e~v-----~~~l~~~m~~~~~~v~~~a 400 (428)
|.||--.-.| -. ..-+.+..+ ++. .+++.|. +.-|..++ .=++++-+.|
T Consensus 149 PEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKI-sFiNEia~ic 227 (414)
T COG1004 149 PEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKI-SFINEIANIC 227 (414)
T ss_pred hHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7776532222 00 001111111 110 1122221 22344443 3567888888
Q ss_pred HhcCCCHHHHHHHHHHH-HHHHH
Q psy8193 401 NTKKVSLRTAAFIIGCT-RVLQA 422 (428)
Q Consensus 401 ~~~~~~~r~aA~~~a~~-rv~~a 422 (428)
++.|.+.++.+.-++++ ||...
T Consensus 228 e~~g~D~~~V~~gIGlD~RIG~~ 250 (414)
T COG1004 228 EKVGADVKQVAEGIGLDPRIGNH 250 (414)
T ss_pred HHhCCCHHHHHHHcCCCchhhHh
Confidence 99999888888866653 55443
No 441
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.15 E-value=5.7 Score=37.74 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=29.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.+++++++|.|. |.+|+++|+.|.++|++|+.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 367889999996 999999999999999998744
No 442
>KOG0023|consensus
Probab=79.03 E-value=13 Score=38.05 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=72.3
Q ss_pred HHHHhCCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC----------CeeeCCCCC-CHHHHHHHHHhcCC-C
Q psy8193 214 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK----------TTIYNPNGF-NIPKLQKYVTFTRS-I 281 (428)
Q Consensus 214 ~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~----------G~i~n~~Gl-D~~~l~~~~~~~g~-l 281 (428)
.+++.|.. .|+++.|.|.|-+|.-..++-...|.+|++|+-++ |+=.==+-. |.+.+.++.+.... +
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 46667777 89999999999999999999999999999888763 110000112 33444444332211 1
Q ss_pred cCCC--CceeccCCCcccccCceEEecccccccccccccccc-cceEEEecCCCCC--CHHHHHHHHHCCC
Q psy8193 282 KDFN--EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPT--TTEADDILRDKGI 347 (428)
Q Consensus 282 ~~~~--~~~~i~~~~~il~~~~DIliPaA~~~~It~~na~~l-~akiIvegAN~p~--t~ea~~iL~~rGI 347 (428)
..-+ ....++..-+++...--++.-...++-+.-+..+.+ +.+.|.+..=+-. |.|+-+...+.+|
T Consensus 252 ~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~i 322 (360)
T KOG0023|consen 252 DTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLI 322 (360)
T ss_pred eeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCC
Confidence 0000 000111011233333334444444445544444443 6667776665553 6777776655544
No 443
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.95 E-value=3.2 Score=40.89 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=31.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++|+|.|. |.+|+++|+.|.+.|++|+.++.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 578999999997 99999999999999999876553
No 444
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.89 E-value=3.9 Score=38.33 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.+++++++|.|. |.+|+++|+.|.++|++++.+..
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 467899999996 99999999999999999875543
No 445
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.89 E-value=3.9 Score=37.98 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.9
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
++.++|+|.|. |.+|+.+++.|.++|++|+.++.+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 46689999997 999999999999999998665553
No 446
>PRK06196 oxidoreductase; Provisional
Probab=78.82 E-value=3.7 Score=40.78 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=31.0
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4678999999998 8899999999999999997554
No 447
>PRK12939 short chain dehydrogenase; Provisional
Probab=78.75 E-value=3.8 Score=38.45 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.+++++++|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 467899999996 999999999999999998765
No 448
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.74 E-value=7.4 Score=45.68 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEE
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKI 250 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Gakv 250 (428)
.-.+|+|.|.|+||.++++.+...|++.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~~ 229 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHTF 229 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCCc
Confidence 3578999999999999999999999884
No 449
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.67 E-value=3.1 Score=43.99 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCceEEEEeccHHHHH-HHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSV-AANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~-~a~~L~~~GakvVaVsD~~ 257 (428)
.++++|.|.|.|..|.+ +|++|.+.|++| .++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V-~~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKV-SGSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeE-EEECCC
Confidence 36789999999999999 799999999998 589963
No 450
>PLN02427 UDP-apiose/xylose synthase
Probab=78.66 E-value=3.4 Score=42.27 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCCCceEEEEec-cHHHHHHHHHHHHC-CCEEEEEE
Q psy8193 219 NLNIINSKISIQGF-GNVGSVAANLFFKA-GAKIVAIQ 254 (428)
Q Consensus 219 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-GakvVaVs 254 (428)
|..++.++|+|.|. |-+|+++++.|.+. |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 55678889999996 99999999999998 58988765
No 451
>PRK07062 short chain dehydrogenase; Provisional
Probab=78.57 E-value=3.8 Score=39.12 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=30.7
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~ 39 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICG 39 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEe
Confidence 3678999999998 7899999999999999987 444
No 452
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.57 E-value=3.8 Score=39.05 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+++|+.|.++|++|+.+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 578999999996 9999999999999999986443
No 453
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.50 E-value=3.2 Score=40.84 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 223 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 223 ~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++|+|.|. |-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 4689999995 9999999999999999997665
No 454
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.50 E-value=3.8 Score=39.05 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
++++++++|.|. |.+|..+++.|.+.|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 578999999998 899999999999999998744
No 455
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.49 E-value=3.8 Score=38.58 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999997 99999999999999999876543
No 456
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=78.49 E-value=30 Score=35.48 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred ecccccCCCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEeccHHHHHHHHHHHH-CCCEEEEEEcCCCeeeCCCC
Q psy8193 187 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNG 265 (428)
Q Consensus 187 tGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~GakvVaVsD~~G~i~n~~G 265 (428)
||.|..+ .+-...|++=.+.+---+++++... .-.+++|+|.|..+++-++.+.+ .+.+=|-|.+
T Consensus 97 TG~plal---~d~~~lTa~RTaAasavAa~~LA~~-da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~---------- 162 (330)
T COG2423 97 TGEPLAL---LDATRLTALRTAAASAVAAKYLARK-DASTLAIIGAGAQARTQLEALKAVRDIREIRVYS---------- 162 (330)
T ss_pred CCCEEEE---ecCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEc----------
Confidence 5666432 2334455554444444455555432 34689999999999999998876 3444445666
Q ss_pred CCHHHHHHHHHhcCCCcCCC-CceeccCCCcccccCceEEecccc--cccccccccccccceEEEecCCCCCCHHHHHHH
Q psy8193 266 FNIPKLQKYVTFTRSIKDFN-EGEKINDSKEFWSIPCDILIPAAI--EDQITINNANNVTAKIILEGANGPTTTEADDIL 342 (428)
Q Consensus 266 lD~~~l~~~~~~~g~l~~~~-~~~~i~~~~~il~~~~DIliPaA~--~~~It~~na~~l~akiIvegAN~p~t~ea~~iL 342 (428)
-+.+...++...-.. .++ ....++ ..+-.-..|||++-|+. +.++..+... =.+-|..=|+|-|--.|.+..+
T Consensus 163 r~~~~~e~~a~~l~~--~~~~~v~a~~-s~~~av~~aDiIvt~T~s~~Pil~~~~l~-~G~hI~aiGad~p~k~Eld~e~ 238 (330)
T COG2423 163 RDPEAAEAFAARLRK--RGGEAVGAAD-SAEEAVEGADIVVTATPSTEPVLKAEWLK-PGTHINAIGADAPGKRELDPEV 238 (330)
T ss_pred CCHHHHHHHHHHHHh--hcCccceecc-CHHHHhhcCCEEEEecCCCCCeecHhhcC-CCcEEEecCCCCcccccCCHHH
Confidence 456666665432110 111 123334 22222347999999986 3344444333 2456777788888766665444
Q ss_pred HHCCCceeccccc
Q psy8193 343 RDKGIILAPDVIT 355 (428)
Q Consensus 343 ~~rGI~viPD~la 355 (428)
..|-=.|+.|.+.
T Consensus 239 l~ra~~vvvD~~~ 251 (330)
T COG2423 239 LARADRVVVDSLE 251 (330)
T ss_pred HHhcCeEEEcCHH
Confidence 4443245556654
No 457
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=78.45 E-value=2.7 Score=41.24 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAG 247 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~G 247 (428)
+..+|+|+|.|-+|+++++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 6789999999999999999999975
No 458
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.40 E-value=3.9 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|.++++.|.+.|++|+.+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 578899999996 8999999999999999997553
No 459
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=78.39 E-value=1.9 Score=35.63 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCceEEEEeccHHHHHHHH-HHHHCCCEEEEEEcC
Q psy8193 223 INSKISIQGFGNVGSVAAN-LFFKAGAKIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~-~L~~~GakvVaVsD~ 256 (428)
+..+++|+|.|+.|+.++. .+...|.+++++.|.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv 36 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV 36 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc
Confidence 4578999999999998874 345578999999994
No 460
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.31 E-value=3.8 Score=39.32 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |-+|+++++.|.++|++|+.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 468899999998 6799999999999999997443
No 461
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.30 E-value=8 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.+|++|+|.|.|++|..+|..|.+.|.+-|.|.+..
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 358999999999999999999999998733566543
No 462
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.28 E-value=3.8 Score=39.42 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999998 8999999999999999987553
No 463
>PRK12746 short chain dehydrogenase; Provisional
Probab=78.22 E-value=4 Score=38.57 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
++++++++|.|. |-+|+++|+.|.++|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999996 999999999999999998643
No 464
>PRK09620 hypothetical protein; Provisional
Probab=78.15 E-value=4 Score=39.50 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=29.2
Q ss_pred CCCceEEEEec-----------------cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-----------------GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++|++|.|.+- |-+|+++|+.|.+.|++|+.|..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 47888988854 88999999999999999987754
No 465
>PRK10537 voltage-gated potassium channel; Provisional
Probab=78.06 E-value=11 Score=39.48 Aligned_cols=102 Identities=10% Similarity=0.090 Sum_probs=58.7
Q ss_pred CceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccCCCcccc----c
Q psy8193 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS----I 299 (428)
Q Consensus 224 g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~~~~il~----~ 299 (428)
...++|.|+|.+|+.+++.|.+.|..++.|.+ + +..+..++ + . .+-.+.. + .++.|. .
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~-d------------~~~~~~~~-g-~-~vI~GD~-t-d~e~L~~AgI~ 301 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVP-L------------GLEHRLPD-D-A-DLIPGDS-S-DSAVLKKAGAA 301 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEEC-c------------hhhhhccC-C-C-cEEEeCC-C-CHHHHHhcCcc
Confidence 45799999999999999999999988864432 1 11111111 1 0 0000111 1 223331 3
Q ss_pred CceEEecccccccc---cccccccc--cceEEEecCCCCCCHHHHHHHHHCCC
Q psy8193 300 PCDILIPAAIEDQI---TINNANNV--TAKIILEGANGPTTTEADDILRDKGI 347 (428)
Q Consensus 300 ~~DIliPaA~~~~I---t~~na~~l--~akiIvegAN~p~t~ea~~iL~~rGI 347 (428)
+|+.++-++-.+.. ....+.++ ++|+|+..-| ++..+.|++-|+
T Consensus 302 ~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~Ga 350 (393)
T PRK10537 302 RARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHP 350 (393)
T ss_pred cCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCC
Confidence 78888876654332 22344444 4688887654 566677888776
No 466
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=78.05 E-value=12 Score=33.44 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=52.2
Q ss_pred cCCCCChhHHHHHHHHHHHHHHh-CCCCCCceEEEEe--------ccHHHHHHHHHHHHCCCEEEEEEcCCCee
Q psy8193 196 SFGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQG--------FGNVGSVAANLFFKAGAKIVAIQDDKTTI 260 (428)
Q Consensus 196 s~~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakvVaVsD~~G~i 260 (428)
-.|+...|-|....+.+.+.+.. ...++...|.|-| .|.-...+.+.|.+.|.+|+.|.|..-.-
T Consensus 44 ~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiP 117 (132)
T PRK09607 44 KADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 117 (132)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 34677889998888888777653 3467889999999 67778889999999999999999965433
No 467
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=78.00 E-value=4 Score=40.45 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=30.3
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
..|++|.|.|. |-+|+++++.|.+.|.+|+++.+
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 35789999996 99999999999999999987765
No 468
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.82 E-value=12 Score=36.46 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=28.5
Q ss_pred CCCceEEEEeccHHHHHHHHHHHHCCCE-EEEEEc
Q psy8193 222 IINSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-vVaVsD 255 (428)
..|.+|+|.|.|.||..+++++...|++ |++ +|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~-~~ 152 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA-AD 152 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE-EC
Confidence 3788999999999999999999999997 654 45
No 469
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.82 E-value=11 Score=37.90 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=28.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCE-EEEEEc
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 255 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~Gak-vVaVsD 255 (428)
.|.+|+|.|.|.||..+++++...|++ |+ ++|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~ 201 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CAD 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEe
Confidence 689999999999999999999999995 54 555
No 470
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.71 E-value=3.7 Score=39.45 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCCCceEEEEecc---HHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVsD~ 256 (428)
+++|++++|.|.+ .+|+.+|+.|.+.|++|+ +.|.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r 44 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYL 44 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 5789999999975 699999999999999985 5564
No 471
>PLN02214 cinnamoyl-CoA reductase
Probab=77.70 E-value=3.8 Score=41.40 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
+++++|+|.|. |-+|+++++.|.+.|.+|++++.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57889999998 99999999999999999987653
No 472
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=77.68 E-value=3.9 Score=38.87 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+++++++|.|. |.+|+++++.|.+.|++|+ +.|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~-~~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVV-LVDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 478899999998 8899999999999999987 4453
No 473
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.64 E-value=3.4 Score=39.34 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCceEEEEecc---HHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGfG---nVG~~~a~~L~~~GakvVaVs 254 (428)
+++++++.|.|.+ .+|..+++.|.+.|++|+.++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 5688999999974 699999999999999987553
No 474
>PRK06500 short chain dehydrogenase; Provisional
Probab=77.62 E-value=3.9 Score=38.42 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
.+++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 367899999998 999999999999999998744
No 475
>KOG1196|consensus
Probab=77.61 E-value=9 Score=38.88 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCcCCCCChhHHHHHHHHHHHHHHhCCCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHH
Q psy8193 194 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 272 (428)
Q Consensus 194 GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~ 272 (428)
=|..|-...|+|-- +.+. ...-+|.+|.|.|. |.||+-+-++-.-.|.+||+++-++ ++..
T Consensus 131 lg~lGm~glTAy~G---f~ei----~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~-----------EKv~ 192 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAG---FYEI----CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSK-----------EKVD 192 (343)
T ss_pred hhccCCchhHHHHH---HHHh----cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCCh-----------hhhh
Confidence 35555556666643 3333 34447899999998 9999998888888899999999764 3333
Q ss_pred HHHHhcCCCcCCCCceeccCCCc----ccccCceEEecccccccccccccc-cccceEEEecCCCC
Q psy8193 273 KYVTFTRSIKDFNEGEKINDSKE----FWSIPCDILIPAAIEDQITINNAN-NVTAKIILEGANGP 333 (428)
Q Consensus 273 ~~~~~~g~l~~~~~~~~i~~~~~----il~~~~DIliPaA~~~~It~~na~-~l~akiIvegAN~p 333 (428)
-++.+.|.-..|. .+.-++..+ .+....||+++--.++..++--.. +.+.||++-|+=.+
T Consensus 193 ll~~~~G~d~afN-YK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq 257 (343)
T KOG1196|consen 193 LLKTKFGFDDAFN-YKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ 257 (343)
T ss_pred hhHhccCCcccee-ccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence 3334443222220 010001112 234567999997777666553221 23678888776443
No 476
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=77.61 E-value=3.9 Score=38.44 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=28.4
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 47889999996 999999999999999998644
No 477
>PLN00198 anthocyanidin reductase; Provisional
Probab=77.59 E-value=3.8 Score=40.90 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCCCceEEEEe-ccHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakvVaVs 254 (428)
+.++++|+|.| .|-+|+++++.|.+.|++|+++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 45789999999 59999999999999999987554
No 478
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.51 E-value=4.1 Score=38.05 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=29.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 478899999996 899999999999999998754
No 479
>PRK09135 pteridine reductase; Provisional
Probab=77.47 E-value=4 Score=38.16 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
.++++++|.|. |.+|+++++.|.++|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999997 99999999999999999976653
No 480
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.47 E-value=4.9 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.9
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.+++++++|.|. |.+|+.+|+.|.+.|++|+.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999996 9999999999999999987544
No 481
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=77.47 E-value=3.4 Score=41.34 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++|.|.|. |-+|+++++.|.+.|++|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 578899999997 99999999999999999987653
No 482
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.41 E-value=3.9 Score=38.19 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 222 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 222 l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
+.+++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 56789999986 999999999999999998754
No 483
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.27 E-value=4 Score=39.02 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=29.7
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
++++++++|.|. +.+|+.+|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 578999999997 899999999999999999754
No 484
>PRK07856 short chain dehydrogenase; Provisional
Probab=77.24 E-value=4.6 Score=38.30 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999997 8999999999999999987443
No 485
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.21 E-value=4.7 Score=37.90 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+++++.|.++|++++.+.+
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 457889999996 88999999999999999875554
No 486
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=77.19 E-value=4.3 Score=35.58 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeeeCCCCCCHHHHHHHHHhcCCCcCCCCceeccC----CCc-ccccCc
Q psy8193 227 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND----SKE-FWSIPC 301 (428)
Q Consensus 227 vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~n~~GlD~~~l~~~~~~~g~l~~~~~~~~i~~----~~~-il~~~~ 301 (428)
|+|.|.|.+|..+|..|++.|..|..++-+ +.+...+++.-.+....+...+.. ... .-..++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS------------PRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH------------HHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc------------ccHHhhhheeEEEEecccceecccccccCcchhccCCC
Confidence 689999999999999999999998756541 223333333222322221111110 111 234689
Q ss_pred eEEecccccccccc---cccccccc-eEEEecCCCCCCH
Q psy8193 302 DILIPAAIEDQITI---NNANNVTA-KIILEGANGPTTT 336 (428)
Q Consensus 302 DIliPaA~~~~It~---~na~~l~a-kiIvegAN~p~t~ 336 (428)
|+++-|.-...... .-.+.+.. ..|+---|+--..
T Consensus 69 D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 69 DLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNE 107 (151)
T ss_dssp SEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHH
T ss_pred cEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcH
Confidence 99999875443322 12222222 2566666765433
No 487
>PRK06223 malate dehydrogenase; Reviewed
Probab=77.15 E-value=2.4 Score=42.32 Aligned_cols=31 Identities=39% Similarity=0.472 Sum_probs=26.1
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCC-EEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~Ga-kvVaVsD~ 256 (428)
++|+|+|.|+||+.+|..+...|. .| .+.|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev-~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDV-VLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEEEC
Confidence 589999999999999999998774 55 46784
No 488
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.04 E-value=3.7 Score=40.25 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=27.2
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 258 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G 258 (428)
..|+|+|.|..|..+|..|.+.|.+| .|.|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v-~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDV-TIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEE-EEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccccc-ccchhcc
Confidence 36999999999999999999999997 4888653
No 489
>PRK10637 cysG siroheme synthase; Provisional
Probab=77.02 E-value=3.4 Score=43.96 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 220 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 220 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++|++|+|+|.|+|+..=++.|.+.|++|+-||-
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 378999999999999999999999999999976663
No 490
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.93 E-value=4.9 Score=37.51 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=30.2
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++++.+.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~ 37 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYD 37 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 467889999997 99999999999999999975525
No 491
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.91 E-value=3.5 Score=45.72 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=30.1
Q ss_pred CCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 223 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 223 ~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+++|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~ 358 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVT-VYDR 358 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 68999999999999999999999999975 6765
No 492
>CHL00041 rps11 ribosomal protein S11
Probab=76.89 E-value=9.7 Score=33.07 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHHHHHHHHh-CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeee
Q psy8193 198 GRQKATGRGVFIIGSKIASKI-NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 261 (428)
Q Consensus 198 ~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~ 261 (428)
|....|-|....+.+.+++.. ...++...|.|-|+|.=-..+.+.|.+.|.+|+.|.|....-|
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpiph 113 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPH 113 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 445677777777766665543 3357889999999998667778999999999999999765443
No 493
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=76.89 E-value=4.3 Score=38.79 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=29.6
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEE
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaV 253 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 578999999996 899999999999999999744
No 494
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.87 E-value=7.4 Score=37.28 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEc
Q psy8193 221 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 255 (428)
Q Consensus 221 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD 255 (428)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv-~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIV-FND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEe
Confidence 678899999998 8999999999999999986 445
No 495
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=76.85 E-value=9.7 Score=32.61 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHh-CCCCCCceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCCCeee
Q psy8193 197 FGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 261 (428)
Q Consensus 197 ~~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~G~i~ 261 (428)
.+....|-|....+.+.+.+.. .+.++...|.+-|+|.=-..+.+.|.+.|.+|+.|.|....-|
T Consensus 35 kg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iph 100 (108)
T TIGR03632 35 KGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPH 100 (108)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 3456778887777776665543 3457888999999998667788999999999999999765444
No 496
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=76.80 E-value=3.5 Score=42.41 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.9
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.+|+|+|.|-+|..+|..|++.|.+|+ |.|.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~-vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVT-VFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEeC
Confidence 379999999999999999999999984 7775
No 497
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.70 E-value=4.6 Score=40.07 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEEcC
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 256 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVsD~ 256 (428)
.++++++++|.|. |.+|+.+|+.|.+.|++|+ +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 4689999999997 7899999999999999986 5553
No 498
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.70 E-value=3.5 Score=40.64 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=25.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEE
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAI 253 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaV 253 (428)
++|+|.|.|++|..+|..|.+.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999887543
No 499
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=76.60 E-value=3.8 Score=41.95 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=28.7
Q ss_pred ceEEEEeccHHHHHHHHHHHHCCCEEEEEEcCC
Q psy8193 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 257 (428)
Q Consensus 225 ~~vaIqGfGnVG~~~a~~L~~~GakvVaVsD~~ 257 (428)
.+|+|+|.|.+|..+|..|.+.|.+|+ |.|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~-l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVA-VIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEE-EEcCC
Confidence 579999999999999999999999985 88853
No 500
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.60 E-value=4.9 Score=39.67 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=30.3
Q ss_pred CCCCCceEEEEec-cHHHHHHHHHHHHCCCEEEEEE
Q psy8193 220 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 254 (428)
Q Consensus 220 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakvVaVs 254 (428)
.++++++++|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3568899999997 9999999999999999987443
Done!