RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8193
(428 letters)
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 649 bits (1678), Expect = 0.0
Identities = 230/424 (54%), Positives = 309/424 (72%), Gaps = 1/424 (0%)
Query: 5 TDNSRPSYLSQNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGE 64
+ S P D GPW ++ +Q+DRV PYLG L+ E LK PK++LIVDVP+ D+G
Sbjct: 16 SMKSEPLSYLGKDGGPWEIFTEQVDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGS 75
Query: 65 VFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRV 124
V ++EGYRV HN RGP KGGVR+HP+VTLSE++AL+GWMTIKNAAV +PYGG KGGIRV
Sbjct: 76 VAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRV 135
Query: 125 NPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPG 184
+P+ LS EL RLTRRYT+EI ++G ++DIPAPDV T + M+WMMDTYS T+PG
Sbjct: 136 DPRKLSPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPG 195
Query: 185 IVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFF 244
+VTGKPI++GGS GR+ ATGRGVFI + A KI L + ++++IQGFGNVG+ AA F
Sbjct: 196 VVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFH 255
Query: 245 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 304
GA++VA+QD T+YN G + L ++V ++ + + E + + +FW +P + L
Sbjct: 256 DHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFL 314
Query: 305 IPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSY 364
+PAA+E QIT NA + A+I+ EGANGPTT ADDIL +KG+++ PDVI NAGGV VSY
Sbjct: 315 VPAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSY 374
Query: 365 FEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 424
FEWVQ+ ++ WTE+EIN RL ++ NAF+A+W++A KK+ LRTAA+++ TRVL+A
Sbjct: 375 FEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARA 434
Query: 425 TRGL 428
RGL
Sbjct: 435 LRGL 438
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 638 bits (1648), Expect = 0.0
Identities = 183/413 (44%), Positives = 270/413 (65%), Gaps = 2/413 (0%)
Query: 17 DLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHN 76
+ + + ++Q +R + S E+L+ PK++LIV+ P+ D+G V + GYRVQHN
Sbjct: 2 EKSLYEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHN 61
Query: 77 ILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMR 136
+ RGP KGG+R+HPDVTL E+ AL+ WMT K A +N+P+GG KGG+RV+PK LS EL R
Sbjct: 62 VARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELER 121
Query: 137 LTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGS 196
L+RR+ EI IIG DIPAPDV T+ +++W MD Y +T+ GIVTGKP+ +GGS
Sbjct: 122 LSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGS 181
Query: 197 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQD 255
GR++ATGRGV + + ++ + +++QGFGNVG AA L + G+K+VA+ D
Sbjct: 182 KGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD 241
Query: 256 DKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITI 315
+ IYNP GF++ +L +Y ++ + +GE+I ++E + DIL+PAA+E I
Sbjct: 242 SRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDILVPAALEGAIHA 300
Query: 316 NNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLL 375
NA + AK ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L +
Sbjct: 301 GNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFF 360
Query: 376 WTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
W ++ L ++ AF+ + ++ V +RTAA+I+ RV A K RG+
Sbjct: 361 WDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRGI 413
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 637 bits (1646), Expect = 0.0
Identities = 171/419 (40%), Positives = 248/419 (59%), Gaps = 6/419 (1%)
Query: 16 NDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQH 75
G L + + G + +IL P+++LIV++P+ D G +EGYRVQH
Sbjct: 2 ERTGFLEYVLNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQH 61
Query: 76 NILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELM 135
+ GP KGGVRFHP+VTL++ +AL+ MT+KN+ +PYGGAKG +RV+PK LS EL
Sbjct: 62 CDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELE 121
Query: 136 RLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGG 195
L+R Y I+ +IG DIPAPDVGT+ QIM+WM+D YS K Y +PG+ T KP + G
Sbjct: 122 ELSRGYARAIAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWG 181
Query: 196 SFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255
+ R+ ATG GV + ++A K+ I ++IQG GNVG A K GAK++A+ D
Sbjct: 182 NPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD 241
Query: 256 DKTTIYNPNGFNIPKLQKYVTFTRSI-----KDFNEGEKINDSKEFWSIPCDILIPAAIE 310
Y G N+ +QK T + E + + + + DI +PAAIE
Sbjct: 242 INGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIE 301
Query: 311 DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQN 370
+ I +NA V A++++EGANGPTT EA+ IL ++G+++ PD++ NAGGVI+SY EWV+N
Sbjct: 302 NVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVEN 361
Query: 371 LSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRGL 428
L +W E+E RL NI+ N + +++ K ++R AA + R+ A K RG
Sbjct: 362 LQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 420
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 637 bits (1646), Expect = 0.0
Identities = 150/421 (35%), Positives = 238/421 (56%), Gaps = 5/421 (1%)
Query: 8 SRPSYLSQNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFH 67
+Y D G W YL+ ++R G +E L HPK+++ + +P+ D+G+V
Sbjct: 2 PLKAYRPPEDPGLWDTYLEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRI 61
Query: 68 YEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPK 127
++GYRV H+I RGP KGGVR P VTL + L+ WMT+K A ++P+GGA GGI V+PK
Sbjct: 62 FQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPK 121
Query: 128 NLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVT 187
LS EL RL RRYT E+ +IG + DI PD+G D Q+M+W+MDTYS T+PG+VT
Sbjct: 122 GLSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVT 181
Query: 188 GKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAG 247
GKP ++GGS GR A G G ++ +A + L++ +++ +QG G VG+ A + G
Sbjct: 182 GKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLG 241
Query: 248 AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPA 307
++VA+ +Y P G ++ ++ T S+ + +E + + ++L+ A
Sbjct: 242 MRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-----APEEVFGLEAEVLVLA 296
Query: 308 AIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEW 367
A E + + A V A+ ++E AN EA+ L KG ++ PD+++ GG++ SY EW
Sbjct: 297 AREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEW 356
Query: 368 VQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
VQ+L+ W+ +E+ R + DA+ A + LR A + R+ +A + RG
Sbjct: 357 VQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLDLRMGALALALERLDEATRLRG 416
Query: 428 L 428
+
Sbjct: 417 V 417
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 636 bits (1644), Expect = 0.0
Identities = 180/414 (43%), Positives = 257/414 (62%), Gaps = 2/414 (0%)
Query: 15 QNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQ 74
+ L + I LG E++K P+++L V +P++ DNG V + GYR Q
Sbjct: 12 KEALNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQ 71
Query: 75 HNILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNEL 134
HN GP KGGVRFHP+V ++ ALS WMT+K N+PYGG KGGI +P+ +S EL
Sbjct: 72 HNDAVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGEL 131
Query: 135 MRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIG 194
RL+R Y IS I+G KDIPAPDV T+ QIM+WMMD YS + + PG +TGKP+ +G
Sbjct: 132 ERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLG 191
Query: 195 GSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 254
GS GR+ AT +GV I + K + + N++I IQGFGN GS A AGAK++ I
Sbjct: 192 GSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGIS 251
Query: 255 DDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQIT 314
D +YNP+G +IP L + + + I ++E CDIL+PAAI +QIT
Sbjct: 252 DANGGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVI-TNEELLEKDCDILVPAAISNQIT 309
Query: 315 INNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNL 374
NA+N+ A I++E ANGPTT +A IL ++G++L PD++ +AGGV VSYFEWVQN
Sbjct: 310 AKNAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGY 369
Query: 375 LWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
W+E+E+ +L +++ ++F+ I++ A T KV +R AA++ G + +A + RG
Sbjct: 370 YWSEEEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASRFRGW 423
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 635 bits (1641), Expect = 0.0
Identities = 161/419 (38%), Positives = 245/419 (58%), Gaps = 7/419 (1%)
Query: 16 NDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQH 75
+ L P +++ LG E+LK P++++ + +P++ D+G V ++G+R H
Sbjct: 3 DTLNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAH 62
Query: 76 NILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELM 135
+ GP KGGVRFHP+V + E+ ALS WMT K A+ +PYGG KGGI V+P LS EL
Sbjct: 63 SSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELE 122
Query: 136 RLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTI-PGIVTGKPISIG 194
+L+R + + +G DIPAPDV T+ QIMSW +D Y + G TGKP++ G
Sbjct: 123 QLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFG 182
Query: 195 GSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 254
GS GR +ATG GV ++ + A + + + ++KI++QGFGNVG+ + G K+ AI
Sbjct: 183 GSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIA 242
Query: 255 DDKT-----TIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 309
+ +YN NG + +L Y +++ F E+I +EFW+ DI++PAA+
Sbjct: 243 EWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTKEYDIIVPAAL 301
Query: 310 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 369
E+ IT A + AK++ E ANGPTT E D +L ++GI L PD++TN+GGV+VSY+EWVQ
Sbjct: 302 ENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQ 361
Query: 370 NLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
N WTE E+ + + A ++ +A+ V+LR A ++ + A K RG
Sbjct: 362 NQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKSIDVAMKLRGW 420
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 629 bits (1624), Expect = 0.0
Identities = 186/415 (44%), Positives = 261/415 (62%), Gaps = 5/415 (1%)
Query: 17 DLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHN 76
+ P+ + ++Q++R Y+ +E LK P++I+ V +P+E D+G V + G+RVQHN
Sbjct: 2 EADPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHN 61
Query: 77 ILRGPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMR 136
RGP KGG+R+HP+ TLS + AL+ WMT K A +++PYGG KGGI V+PK LS+ E R
Sbjct: 62 WARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKER 121
Query: 137 LTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIP--GIVTGKPISIG 194
L R Y I +I +DIPAPDV T+ QIM+WMMD Y T P GI+TGKP+SIG
Sbjct: 122 LARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIG 181
Query: 195 GSFGRQKATGRGVFIIGSKIASKINLNII-NSKISIQGFGNVGSVAANLFFKA-GAKIVA 252
GS GR +AT RG + A + + + I+IQG+GN G A + + G K+VA
Sbjct: 182 GSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA 241
Query: 253 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 312
+ D K IYNP+G N ++ K+ S+KDF I ++E + D+L PAAIE+
Sbjct: 242 VSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDVLAPAAIEEV 300
Query: 313 ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLS 372
IT NA+N+ AKI+ E ANGP T EAD+IL +KGI+ PD + NAGGV VSYFEWVQN++
Sbjct: 301 ITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNIT 360
Query: 373 NLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
WT +E+ RL+ + AF ++ +A K + +R AA+++ RV QA RG
Sbjct: 361 GYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRG 415
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 551 bits (1422), Expect = 0.0
Identities = 153/469 (32%), Positives = 230/469 (49%), Gaps = 67/469 (14%)
Query: 25 LQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKG 84
L+ + + + I+K +L + PI D+G EGYR QH+ R P KG
Sbjct: 32 LKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKG 91
Query: 85 GVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNE 144
G+R+ DV++ E+ AL+ MT K A V++P+GGAK G+++NPKN ++NEL ++TRR+T E
Sbjct: 92 GIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTME 151
Query: 145 IS--SIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNY---TIPGIVTGKPISIGGSFGR 199
++ IG D+PAPD+ T + MSW+ DTY++ + VTGKPIS GG GR
Sbjct: 152 LAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGR 211
Query: 200 QKATGRGVFII--------GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIV 251
ATGRGVF + + +QGFGNVG + + GAK +
Sbjct: 212 ISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCI 271
Query: 252 AIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED 311
+ + +I+NP+G + +L+ + +I F + + + CDILIPAA E
Sbjct: 272 TVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVDCDILIPAASEK 329
Query: 312 QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 371
Q+T +NA V AKII EGANGPTT EAD I ++ I++ PD+ NAGGV VSYFEW+ NL
Sbjct: 330 QLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNL 389
Query: 372 SNLLWTEQE--------------------------------------------------I 381
+++ + +
Sbjct: 390 NHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIV 449
Query: 382 NLRLNNIICNAFDAIWELANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 428
+ L + + I A + LRTAA++ +V + + G+
Sbjct: 450 HSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 498
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 458 bits (1181), Expect = e-161
Identities = 87/394 (22%), Positives = 142/394 (36%), Gaps = 49/394 (12%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRF----HPDVTLSEI 97
+EI K+ +K + D + H+ GP GG R + + +
Sbjct: 1 MEIFKYMEKYDYEQLVFCQDEASGL--KAVIAIHDTTLGPALGGARMWTYNAEEEAIEDA 58
Query: 98 IALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPA 157
+ L+ MT KNAA + GG K I +P N ++ R R+ I + G + I A
Sbjct: 59 LRLARGMTYKNAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRF---IQGLNG--RYITA 113
Query: 158 PDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASK 217
DVGT + M + VTG + G S T GV+ A +
Sbjct: 114 EDVGTTVDDMDLIHQET---------DYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKE 164
Query: 218 I--NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 275
+ ++ +S+QG GNV GAK+V +K +
Sbjct: 165 AFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVS-------------- 210
Query: 276 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGA-NGPT 334
+ + + + + CDI P A+ + + AK+I A N
Sbjct: 211 ----AAVAEEGADAV-APNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLK 265
Query: 335 TTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFD 394
L + GI+ APD + NAGGVI E + R++ I ++ +
Sbjct: 266 DPRHGKYLHELGIVYAPDYVINAGGVINVADELYG------YNRTRAMKRVDGIY-DSIE 318
Query: 395 AIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
I+ ++ V AA + R+ + K R
Sbjct: 319 KIFAISKRDGVPSYVAADRMAEERIAKVAKARSQ 352
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 437 bits (1126), Expect = e-153
Identities = 90/389 (23%), Positives = 148/389 (38%), Gaps = 52/389 (13%)
Query: 54 VDVPIEHDN-GEVFHYEGYRVQ------HNILRGPGKGGVRFHPDVT----LSEIIALSG 102
+D + D V ++ + GP GG R L++ L+G
Sbjct: 2 IDSALNWDGEMTVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAG 61
Query: 103 WMTIKNAAVNIPYGGAKGGIRVNPK--NLSNNELMRLTRRYTNEISSIIGLNKDIPAPDV 160
MT+K A N+P GG K I + ++ + R+ R + I + G PDV
Sbjct: 62 AMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSG--NYWTGPDV 119
Query: 161 GTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINL 220
T+ M + DT V G+ + GG+ T GVF + L
Sbjct: 120 NTNSADMDTLNDTTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGL 170
Query: 221 NII-NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 279
+ + +QG G VG A+L +AGA+++ D + + +
Sbjct: 171 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-------- 222
Query: 280 SIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE-A 338
++ S PCD+ P A+ IT A + ++ AN E A
Sbjct: 223 ------------ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAA 270
Query: 339 DDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWE 398
DIL +GI+ APD + NAGG I + L W+E ++ R I + + ++E
Sbjct: 271 SDILHARGILYAPDFVANAGGAI-----HLVGREVLGWSESVVHERAVAIG-DTLNQVFE 324
Query: 399 LANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
+++ V+ AA + R +A T
Sbjct: 325 ISDNDGVTPDEAARTLAGRRAREASTTTA 353
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 432 bits (1112), Expect = e-150
Identities = 126/400 (31%), Positives = 198/400 (49%), Gaps = 13/400 (3%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E + P++++ VP E DNG+V GYRVQ N GP KGG+RF P V LS + L
Sbjct: 48 LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLG 107
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
K++ +P GGAKGG +P S+ E+MR + + E+ IG + D+PA D+G
Sbjct: 108 FEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLG 167
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLN 221
+ + +M Y G++TGK S GGS R +ATG G + N
Sbjct: 168 VGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDT 227
Query: 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-- 279
++ +++ GFGNV AA + GAK V + IY+P G + Y+ R
Sbjct: 228 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRAS 287
Query: 280 ---SIKDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGAN 331
++D+ + G + ++ W DI++P A ++ + + A + A K +E AN
Sbjct: 288 GRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVAN 347
Query: 332 GPTTTEADDIL-RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIIC 390
PTT EA L + +++AP NAGGV+VS FE QN L WT +E++ +L+ ++
Sbjct: 348 MPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMT 407
Query: 391 NAFDAIWELANT--KKVSLRTAAFIIGCTRVLQAHKTRGL 428
+ D A +L A I+G ++ A +G+
Sbjct: 408 DIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 417 bits (1074), Expect = e-144
Identities = 119/401 (29%), Positives = 189/401 (47%), Gaps = 16/401 (3%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
IE L P++ + V DNG +RVQ+N GP KGG+RFHP V LS + L
Sbjct: 71 IETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLG 130
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
KN+ + GG KGG +PK S+NE+++ + + NE+ IG D+PA D+G
Sbjct: 131 FEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIG 190
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLN 221
+ + ++ Y N G +TGK + GGS R +ATG G+ ++ +N+
Sbjct: 191 VGGREIGYLYGQYKKIVNSF-NGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIP 249
Query: 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ-----KYVT 276
+ + G GNV K++ + D +Y PNGF L+ K
Sbjct: 250 VEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEK 309
Query: 277 FTRSIKDFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGA 330
R IK++ K +++ W +PC + P A ++ + ++ A + ++ EGA
Sbjct: 310 KGR-IKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGA 368
Query: 331 NGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIIC 390
N P+T +A ++ + II P NAGGV +S E QN WT + ++ +L I+
Sbjct: 369 NMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMR 428
Query: 391 NAFDAIWELA---NTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
N F A E A K L+ A I G +V +++ +G
Sbjct: 429 NIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC 469
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 416 bits (1072), Expect = e-143
Identities = 134/416 (32%), Positives = 205/416 (49%), Gaps = 13/416 (3%)
Query: 25 LQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKG 84
L + V +E + P++++ VP +D GE G+RVQ+N + GP KG
Sbjct: 41 LSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKG 100
Query: 85 GVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNE 144
G+RFHP V LS I L KN+ +P GG KGG +PK S NE+++ + +
Sbjct: 101 GLRFHPAVNLSVIKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTN 160
Query: 145 ISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATG 204
+ IG N D+PA D+G + + ++ Y KN G++TGK I GGS R +ATG
Sbjct: 161 LFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSF-EGVLTGKNIKWGGSNIRAEATG 219
Query: 205 RGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPN 264
GV + +N N+ N K + G GNV + GA ++ + D I PN
Sbjct: 220 YGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPN 279
Query: 265 GFNIPKLQ--KYVTFTR--SIKDFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINN 317
GF +L + + +K++ + K ++++ W+IPCDI P A +++I N+
Sbjct: 280 GFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINEND 339
Query: 318 ANNVTA---KIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNL 374
A+ K+I+EGAN PT +A L+ IIL P NAGGV VS E QN L
Sbjct: 340 ADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRL 399
Query: 375 LWTEQEINLRLNNIICNAFDAIWELANT--KKVSLRTAAFIIGCTRVLQAHKTRGL 428
WT QE +++L NI+ + ++ + + L A I G +V + +G
Sbjct: 400 QWTHQETDMKLQNIMKSIYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG 455
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 397 bits (1022), Expect = e-136
Identities = 119/397 (29%), Positives = 197/397 (49%), Gaps = 11/397 (2%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E L P++++ V D ++ +RVQ + GP KGG+RFHP V LS + L
Sbjct: 51 LERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLG 110
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
T KNA +P GG KGG +PK S E+MR + E+ +G + D+PA D+G
Sbjct: 111 FEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIG 170
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLN 221
+ + +M N T + TGK +S GGS R +ATG G+ + + +
Sbjct: 171 VGGREVGFMAGMMKKLSNNT-ACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMG 229
Query: 222 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-- 279
++S+ G GNV A + GA+++ D T+ + +GF KL + +
Sbjct: 230 FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASR 289
Query: 280 --SIKDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANG 332
+ D+ + G + ++ WS+P DI +P A ++++ ++ A+ + A K + EGAN
Sbjct: 290 DGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANM 349
Query: 333 PTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNA 392
PTT EA ++ + G++ AP NAGGV S E QN + L W ++++ RL++I+ +
Sbjct: 350 PTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDI 409
Query: 393 FDAIWELANTK-KVSLRTAAFIIGCTRVLQAHKTRGL 428
A E + + A I G +V A +G+
Sbjct: 410 HHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 8e-04
Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 49/158 (31%)
Query: 230 QGFGNVG---------SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI-------PKLQK 273
QG G A +++ +A D GF+I P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRA---------DNHFKDT-YGFSILDIVINNPV-NL 1672
Query: 274 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANG- 332
+ F +G++I + + ++ + ++ ++ + N + G
Sbjct: 1673 TIHFGGE-----KGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 333 --------P--TTTE--ADDILRDKGIILAPDVITNAG 358
P T E A + L+ KG+I A AG
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATF--AG 1761
Score = 32.3 bits (73), Expect = 0.34
Identities = 55/306 (17%), Positives = 87/306 (28%), Gaps = 132/306 (43%)
Query: 170 M-MDTYST---------------KKNY--TIPGIVTGKPISIGGSFGRQKATGRGVFIIG 211
M MD Y T K Y +I IV P+++ FG +K G+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GK------ 1682
Query: 212 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL 271
+I N S + + + G + FK ++ +T Y F K
Sbjct: 1683 -----RIRENY--SAMIFETIVD-GKLKTEKIFKE-------INEHSTSYT---FRSEKG 1724
Query: 272 QKYVT-FT------------RSIKDFNEGEKINDSK-------EFWSIPCDILIPAA--- 308
T FT +K +G D+ E+ AA
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKS--KGLIPADATFAGHSLGEY----------AALAS 1772
Query: 309 ------IEDQI--------TINNA------NNVTAKIILEGANGPTTTEA---DDILRDK 345
IE + T+ A +I A P A + L+
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---AINPGRVAASFSQEALQY- 1828
Query: 346 GIILAPDVITNAGGV--IVSYFEWVQNLSNLLWTEQEINLRLNNIIC----NAFDAIWEL 399
+ V G + IV+Y N+ N +Q + A D + +
Sbjct: 1829 ---VVERVGKRTGWLVEIVNY-----NVEN----QQ--------YVAAGDLRALDTVTNV 1868
Query: 400 ANTKKV 405
N K+
Sbjct: 1869 LNFIKL 1874
Score = 31.6 bits (71), Expect = 0.58
Identities = 77/417 (18%), Positives = 116/417 (27%), Gaps = 146/417 (35%)
Query: 5 TDNSRPSYLSQN-DLGPWGVYLQQIDRV--TPYLGSLSRWIEILKHPKKILIVDVPIEHD 61
T +Q ++ W L+ YL S+ P + P+
Sbjct: 201 TTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLSI---------P-----ISCPL--- 240
Query: 62 NG--EVFHYE------GYRVQHNILRGPGKGGVRFHPDVTLSEIIALSG-WMTIKNAAVN 112
G ++ HY G+ LR KG + + IA + W + +
Sbjct: 241 IGVIQLAHYVVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 113 -------IPYGGAKGGIR---------VNPKNLS----NNE----LM----RLTRRYTNE 144
I G+R + P L NNE M LT+ +
Sbjct: 299 AITVLFFI-------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE---Q 348
Query: 145 ISSIIG-LNKDIPAPDVGTDMQI-MSWMMDTYSTKKNYTIPGIVTGKPISIGG---SFGR 199
+ + N +PA Q+ +S + KN +V+G P S+ G + +
Sbjct: 349 VQDYVNKTNSHLPA-----GKQVEIS----LVNGAKNL----VVSGPPQSLYGLNLTLRK 395
Query: 200 QKA-TGRGVFIIGSKI-ASKINLNIINSKISIQGFGNVGSVAANLFF-----KAGAKIVA 252
KA +G S+I S+ L N F V S F A I
Sbjct: 396 AKAPSGLDQ----SRIPFSERKLKFSNR------FLPVASP----FHSHLLVPASDLINK 441
Query: 253 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 312
+N IP V T D I I D
Sbjct: 442 DLVKNNVSFNAKDIQIP-----VYDTFDGSDLRV--------------LSGSISERIVDC 482
Query: 313 IT---IN--NANNVTAKIILE---GAN---GPTTTEADDILRDKG--IILAPDVITN 356
I + A IL+ G G T G +I+A + N
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR---NKDGTGVRVIVAGTLDIN 536
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 32.1 bits (74), Expect = 0.33
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 15/48 (31%)
Query: 237 SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI--------P-KLQKYV 275
S+A LF A I + PNG NI P L + V
Sbjct: 208 SLAPYLFADLEADISTMGTS------PNGMNINDGVGSTHPEVLAELV 249
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 31.7 bits (71), Expect = 0.41
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 221 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 253
+I ++ I + G GN+ + A ++ G +IV +
Sbjct: 7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQV 39
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 31.7 bits (73), Expect = 0.47
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 237 SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI--------P-KLQKYV 275
L K G V+I NP+G NI ++K V
Sbjct: 186 HNFEALLDKFGINYVSIAS------NPDGLNINVGCGATCVSNIKKAV 227
>3gi7_A Secreted protein of unknown function DUF1311; structural genomics,
joint center for STRU genomics, JCSG, protein structure
initiative, PSI-2; 1.85A {Pseudomonas putida}
Length = 122
Score = 29.9 bits (66), Expect = 0.58
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 103 WMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPD 159
W +++A + + G N+ + + + + S+ N D PAP+
Sbjct: 66 WSQLRDADCKVETHAEQPGSNAYQIAW-NSCIAQRSDERAEYLRSLGSQNSDEPAPE 121
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 30.6 bits (68), Expect = 0.76
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAI 253
+I+I G GN+G + F AG ++
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYY 48
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone,
cytoplasm, disease mutation, nucleus, oncogene,
oxidation, parkinson disease; 1.05A {Homo sapiens} PDB:
1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A*
3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A
2or3_A 3bwe_A 3b38_A 3b36_A ...
Length = 197
Score = 29.8 bits (68), Expect = 1.1
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 82 GKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNE-LMRLTRR 140
V PD +L + + V +P GG G +NLS + + + +
Sbjct: 46 CSRDVVICPDASLEDAKKEGPY-----DVVVLP-GGNLG-----AQNLSESAAVKEILKE 94
Query: 141 YTNE 144
N
Sbjct: 95 QENR 98
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 29.7 bits (66), Expect = 1.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQD 255
+ + G+G +G A + G +I AI D
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILD 31
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 29.6 bits (66), Expect = 1.9
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 79 RGPGKGGVRFHPDVTLSEIIALSG--WMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMR 136
R G+ D TL EI +L I+N Y G + + + + E +
Sbjct: 97 RKDGRYYAI---DFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIE 153
Query: 137 LTRRYTNEISSIIGLNKDIPAPDVGTDMQ 165
+ + IG+ +I AP
Sbjct: 154 FVQGLNHSTGKNIGIYPEIKAPWFHHQEG 182
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 29.8 bits (68), Expect = 2.0
Identities = 5/33 (15%), Positives = 7/33 (21%), Gaps = 6/33 (18%)
Query: 236 GSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 268
+ G KI I N +
Sbjct: 185 ALSTPLVARALGCKIYTING------NLDPLFS 211
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.9 bits (64), Expect = 2.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVA 252
+ I G G+ G + G +V
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVF 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 2.7
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 27/121 (22%)
Query: 40 RWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIA 99
++ PK D+ + + + + G+ H L+ +TL ++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---H--LKNIEHPE-----RMTLFRMVF 497
Query: 100 LS-GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAP 158
L ++ K + + A G I N L +L + Y I + P
Sbjct: 498 LDFRFLEQKIRHDSTAW-NASGSI--------LNTLQQL-KFYKPYIC------DNDPKY 541
Query: 159 D 159
+
Sbjct: 542 E 542
Score = 29.1 bits (64), Expect = 3.5
Identities = 29/244 (11%), Positives = 63/244 (25%), Gaps = 73/244 (29%)
Query: 1 MSKFTDNSRPSYLSQNDLGPWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVD-V--- 56
+ K P++ S++D +I + L R ++ + +L++ V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNA 256
Query: 57 -PIEH------------DNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALSGW 103
H L PD S L +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKS---LLLKY 310
Query: 104 MTIK-----NAAVNI-PYG----GAKGGIRVNP------KNLSNNELMRL---------- 137
+ + + P IR K+++ ++L +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 138 --TRRYTNEISSIIGLNKDIPA---------PDVGTDMQIMSWMMDTYSTKKN-----YT 181
R+ + + S+ + IP M +++ + +K +
Sbjct: 369 AEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 182 IPGI 185
IP I
Sbjct: 428 IPSI 431
Score = 29.1 bits (64), Expect = 3.8
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 62/186 (33%)
Query: 283 DFNEGEKINDSKEFWSIPCDIL---IPAAIEDQITINNANNVTAKIILEGANGPTTTEAD 339
DF GE K DIL A +++ + ++ I+ + E D
Sbjct: 8 DFETGEHQYQYK-------DILSVFEDAFVDN-FDCKDVQDMPKSIL-------SKEEID 52
Query: 340 DIL----RDKGIILAPDVITNAGGVIVSYF---------EWV------QNLSNLLWTEQE 380
I+ G + + + +V F +++ + + T
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 381 INLRLNNIICNA-----------FDAIWELANTKKVSLRTAAFII-----GC------TR 418
I R + + N +L + LR A ++ G
Sbjct: 113 IEQR--DRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 419 VLQAHK 424
V ++K
Sbjct: 170 VCLSYK 175
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 28.8 bits (64), Expect = 2.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIV 251
K+ I G G+ A +G K+V
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVV 55
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.9 bits (64), Expect = 3.7
Identities = 11/63 (17%), Positives = 25/63 (39%)
Query: 207 VFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF 266
+F I + + I +++ I G G+ N+ + +++A DD +
Sbjct: 35 MFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY 94
Query: 267 NIP 269
+P
Sbjct: 95 GLP 97
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 28.1 bits (62), Expect = 4.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIV 251
KI++ G G VG A G ++
Sbjct: 21 KIAVLGTGTVGRTMAGALADLGHEVT 46
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 28.0 bits (62), Expect = 6.3
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 256 DKTTIYNPNGF------NIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCDILIPA 307
+ T I+ + + K+++ T ++ F + N + + A
Sbjct: 153 ELTFIFRDFDYMGCMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAA 212
Query: 308 A 308
Sbjct: 213 F 213
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 27.5 bits (60), Expect = 7.6
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAI 253
++ G G + K +I I
Sbjct: 4 VLNFVGTGTLTRFFLEC-LKDRYEIGYI 30
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 27.5 bits (62), Expect = 10.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 213 KIASKINLNIINSKISIQGFGNVGSVAANL 242
KI+ K N I+ KISI G G +GS A L
Sbjct: 3 KISYKYNTVIMRKKISIIGAGQIGSTIALL 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,687,168
Number of extensions: 423572
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1120
Number of HSP's successfully gapped: 48
Length of query: 428
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 332
Effective length of database: 4,021,377
Effective search space: 1335097164
Effective search space used: 1335097164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)