RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8193
(428 letters)
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 175
Score = 203 bits (517), Expect = 1e-64
Identities = 89/173 (51%), Positives = 124/173 (71%)
Query: 21 WGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRG 80
+ + ++Q +R + S E+L+ PK++LIV+ P+ D+G V + GYRVQHN+ RG
Sbjct: 3 YEMAVEQFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARG 62
Query: 81 PGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRR 140
P KGG+R+HPDVTL E+ AL+ WMT K A +N+P+GG KGG+RV+PK LS NEL RL+RR
Sbjct: 63 PAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRR 122
Query: 141 YTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISI 193
+ +EI IIG DIPAPDV T+ +++W MDTYS +T+ GIVTGKP+ +
Sbjct: 123 FFSEIQVIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVEL 175
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 205 bits (522), Expect = 2e-64
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 13/253 (5%)
Query: 189 KPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA 248
K S GGS R +ATG G + N ++ +++ GFGNV AA + GA
Sbjct: 1 KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGA 60
Query: 249 KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-------FNEGEKINDSKEFWSIPC 301
K V + IY+P G + Y+ R+ G + ++ W
Sbjct: 61 KAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKV 120
Query: 302 DILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDIL-RDKGIILAPDVITNA 357
DI++P A ++ + + A + A K +E AN PTT EA L + +++AP NA
Sbjct: 121 DIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNA 180
Query: 358 GGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTAAFIIG 415
GGV+VS FE QN L WT +E++ +L+ ++ + D A + +L A I+G
Sbjct: 181 GGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVG 240
Query: 416 CTRVLQAHKTRGL 428
++ A +G+
Sbjct: 241 FQKIADAMMAQGI 253
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 178
Score = 201 bits (512), Expect = 6e-64
Identities = 86/176 (48%), Positives = 118/176 (67%), Gaps = 2/176 (1%)
Query: 20 PWGVYLQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILR 79
P+ + ++Q++R Y+ +E LK P++I+ V +P+E D+G V + G+RVQHN R
Sbjct: 3 PYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWAR 62
Query: 80 GPGKGGVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTR 139
GP KGG+R+HP+ TLS + AL+ WMT K A +++PYGG KGGI V+PK LS+ E RL R
Sbjct: 63 GPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLAR 122
Query: 140 RYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIP--GIVTGKPISI 193
Y I +I +DIPAPDV T+ QIM+WMMD Y T P GI+TGKP+SI
Sbjct: 123 GYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSI 178
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 200 bits (508), Expect = 1e-62
Identities = 97/235 (41%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 194 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA-GAKIVA 252
GGS GR++ATGRGV + + ++ + +++QGFGNVG AA L + G+K+VA
Sbjct: 1 GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 60
Query: 253 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 312
+ D + IYNP GF++ +L +Y ++ + +GE+I ++E + DIL+PAA+E
Sbjct: 61 VSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDILVPAALEGA 119
Query: 313 ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLS 372
I NA + AK ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L
Sbjct: 120 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 179
Query: 373 NLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 427
+ W ++ L ++ AF+ + ++ V +RTAA+I+ RV A K RG
Sbjct: 180 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 234
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 197 bits (502), Expect = 2e-62
Identities = 82/169 (48%), Positives = 113/169 (66%)
Query: 25 LQQIDRVTPYLGSLSRWIEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKG 84
L + + G + +IL P+++LIV++P+ D G +EGYRVQH + GP KG
Sbjct: 8 LNYVKKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKG 67
Query: 85 GVRFHPDVTLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNE 144
GVRFHP+VTL++ +AL+ MT+KN+ +PYGGAKG +RV+PK LS EL L+R Y
Sbjct: 68 GVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARA 127
Query: 145 ISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIVTGKPISI 193
I+ +IG DIPAPDVGT+ QIM+WM+D YS K Y +PG+ T KP +
Sbjct: 128 IAPLIGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPEL 176
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 195 bits (496), Expect = 9e-61
Identities = 101/237 (42%), Positives = 142/237 (59%), Gaps = 3/237 (1%)
Query: 194 GGSFGRQKATGRGVFIIGSKIASKINLNIINSK-ISIQGFGNVGSVAA-NLFFKAGAKIV 251
GGS GR +AT RG + A + + + K I+IQG+GN G A + G K+V
Sbjct: 1 GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVV 60
Query: 252 AIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED 311
A+ D K IYNP+G N ++ K+ S+KDF I ++E + D+L PAAIE+
Sbjct: 61 AVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDVLAPAAIEE 119
Query: 312 QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 371
IT NA+N+ AKI+ E ANGP T EAD+IL +KGI+ PD + NAGGV VSYFEWVQN+
Sbjct: 120 VITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNI 179
Query: 372 SNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 428
+ WT +E+ RL+ + AF ++ +A K + +R AA+++ RV QA RG
Sbjct: 180 TGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 236
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 193 bits (491), Expect = 3e-59
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 62/291 (21%)
Query: 198 GRQKATGRGVFII--------GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK 249
GR ATGRGVF + + ++QGFGNVG + + GAK
Sbjct: 2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61
Query: 250 IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 309
VA+ + +I+NP+G + +L+ + +I F + + + CDILIPAA
Sbjct: 62 CVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVDCDILIPAAS 119
Query: 310 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 369
E Q+T +NA V AKII EGANGPTT +AD I ++ I++ PD+ NAGGV VSYF+ ++
Sbjct: 120 EKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILK 179
Query: 370 NLSNLLWTEQE------------------------------------------------- 380
NL+++ +
Sbjct: 180 NLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD 239
Query: 381 -INLRLNNIICNAFDAIWELAN--TKKVSLRTAAFIIGCTRVLQAHKTRGL 428
++ L + + I A + LRTAA++ +V + + G+
Sbjct: 240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 290
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 190 bits (484), Expect = 7e-59
Identities = 88/239 (36%), Positives = 134/239 (56%), Gaps = 6/239 (2%)
Query: 195 GSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 254
G+ R+ ATG GV + ++A K+ I ++IQG GNVG A K GAK++A+
Sbjct: 2 GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61
Query: 255 DDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNEGEKINDSKEFWSIPCDILIPAAI 309
D Y G N+ +QK T + E + + + + DI +PAAI
Sbjct: 62 DINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI 121
Query: 310 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 369
E+ I +NA V A++++EGANGPTT EA+ IL ++G+++ PD++ NAGGVI+SY EWV+
Sbjct: 122 ENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 181
Query: 370 NLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRG 427
NL +W E+E RL NI+ N + +++ K ++R AA + R+ A K RG
Sbjct: 182 NLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRG 240
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 185 bits (471), Expect = 2e-57
Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+ I+K +L + PI D+G EGYR QH+ R P KGG+R+ DV++ E+ AL+
Sbjct: 49 LRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALA 108
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEIS--SIIGLNKDIPAPD 159
MT K A V++P+GGAK G+++NPKN ++ +L ++TRR+T E++ IG D+PAP+
Sbjct: 109 SLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPN 168
Query: 160 VGTDMQIMSWMMDTYSTKKNY---TIPGIVTGKPISIGG 195
+ T + MSW+ DTY++ + VTGKPIS GG
Sbjct: 169 MSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGG 207
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 194
Score = 172 bits (436), Expect = 2e-52
Identities = 53/147 (36%), Positives = 79/147 (53%)
Query: 42 IEILKHPKKILIVDVPIEHDNGEVFHYEGYRVQHNILRGPGKGGVRFHPDVTLSEIIALS 101
+E + P++++ VP E DNG+V GYRVQ N GP KGG+RF P V LS + L
Sbjct: 48 LERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLG 107
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
K++ +P GGAKGG +P S+ E+MR + + E+ IG + D+PA D+G
Sbjct: 108 FEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLG 167
Query: 162 TDMQIMSWMMDTYSTKKNYTIPGIVTG 188
+ + +M Y G++TG
Sbjct: 168 VGAREIGYMYGQYRKIVGGFYNGVLTG 194
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 170 bits (431), Expect = 3e-51
Identities = 52/244 (21%), Positives = 84/244 (34%), Gaps = 29/244 (11%)
Query: 188 GKPISIGGSFGRQKATGRGVFIIGSKIASKI--NLNIINSKISIQGFGNVGSVAANLFFK 245
G + G S T GV+ A + + ++ +S+QG GNV
Sbjct: 1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNT 60
Query: 246 AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 305
GAK+V +K + EG + + CDI
Sbjct: 61 EGAKLVVTDVNKAAVSAAVAE-------------------EGADAVAPNAIYGVTCDIFA 101
Query: 306 PAAIEDQITINNANNVTAKIILEGA-NGPTTTEADDILRDKGIILAPDVITNAGGVIVSY 364
P A+ + + AK+I A N L + GI+ APD + NAGGVI
Sbjct: 102 PCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVA 161
Query: 365 FEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 424
E + R++ I ++ + I+ ++ V AA + R+ + K
Sbjct: 162 DELYG------YNRTRAMKRVDGIY-DSIEKIFAISKRDGVPSYVAADRMAEERIAKVAK 214
Query: 425 TRGL 428
R
Sbjct: 215 ARSQ 218
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 134
Score = 129 bits (326), Expect = 5e-37
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 53 IVDVPIEHDNGEVFH-------YEGYRVQHNILRGPGKGGVRFHP----DVTLSEIIALS 101
I ++D ++ + H+ GP GG R + + + + L+
Sbjct: 3 IFKYMEKYDYEQLVFCQDEASGLKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLA 62
Query: 102 GWMTIKNAAVNIPYGGAKGGIRVNPKNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVG 161
MT KNAA + GG K I +P N ++ R R+ ++ + I A DVG
Sbjct: 63 RGMTYKNAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGLN-----GRYITAEDVG 117
Query: 162 TDMQIMSWMMDTYS 175
T + M +
Sbjct: 118 TTVDDMDLIHQETD 131
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 130 bits (327), Expect = 2e-36
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 28/223 (12%)
Query: 202 ATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 260
T GVF + L ++ + +QG G VG A+L +AGA+++ D +
Sbjct: 4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 63
Query: 261 YNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANN 320
+ ++ S PCD+ P A+ IT A
Sbjct: 64 AHAVALGH--------------------TAVALEDVLSTPCDVFAPCAMGGVITTEVART 103
Query: 321 VTAKIILEGANGPTTTE-ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQ 379
+ ++ AN E A DIL +GI+ APD + NAGG I V W+E
Sbjct: 104 LDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLG-----WSES 158
Query: 380 EINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 422
++ R I + + ++E+++ V+ AA + R +A
Sbjct: 159 VVHERAVAIG-DTLNQVFEISDNDGVTPDEAARTLAGRRAREA 200
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
sp., M4 [TaxId: 1831]}
Length = 148
Score = 122 bits (308), Expect = 3e-34
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 73 VQHNILRGPGKGGVRFHPDV----TLSEIIALSGWMTIKNAAVNIPYGGAKGGIRVNP-- 126
+ GP GG R L++ L+G MT+K A N+P GG K I +
Sbjct: 28 RLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPR 87
Query: 127 KNLSNNELMRLTRRYTNEISSIIGLNKDIPAPDVGTDMQIMSWMMDTYSTKKNYTIPGIV 186
++ + R+ R + I + G PDV T+ M + DT V
Sbjct: 88 HSIDPSTWARILRIHAENIDKLSG--NYWTGPDVNTNSADMDTLNDTTE---------FV 136
Query: 187 TGKPISIGGS 196
G+ + GG+
Sbjct: 137 FGRSLERGGA 146
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 35.7 bits (81), Expect = 0.005
Identities = 21/123 (17%), Positives = 34/123 (27%)
Query: 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 283
+ ++ G GN G A G ++A D I + + D
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPD 60
Query: 284 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILR 343
+ K+ I + I + + IIL E ILR
Sbjct: 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILR 120
Query: 344 DKG 346
+ G
Sbjct: 121 ENG 123
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 202
Score = 35.4 bits (80), Expect = 0.007
Identities = 15/80 (18%), Positives = 27/80 (33%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 285
+ISI G G VG+V A G +++ + T I N P ++ +
Sbjct: 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT 61
Query: 286 EGEKINDSKEFWSIPCDILI 305
+ + D+
Sbjct: 62 GRLSGTTDFKKAVLDSDVSF 81
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 29.5 bits (65), Expect = 0.50
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 280
KI++ G G +G + K G ++ + N + T +
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAN 56
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 28.7 bits (64), Expect = 0.93
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 260
SKI I GFG +G + + GA++VA+ D +
Sbjct: 1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIAL 36
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 28.5 bits (63), Expect = 0.98
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 226 KISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 281
+++ G G VGS + +V + + + ++ + + + +
Sbjct: 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKA----- 60
Query: 282 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGAN 331
K + + P + D + K + G +
Sbjct: 61 ALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGIS 110
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 27.0 bits (59), Expect = 2.1
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 218 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 277
I + + I G G+V A L +AGA++ T
Sbjct: 6 IFCQLRDRDCLIVGGGDVAERKARLLLEAGARL-------TVNALTFIPQFTVWANEGML 58
Query: 278 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-----EDQITINNANN 320
T F+E ++ + D + + +I N +
Sbjct: 59 TLVEGPFDE-TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDA 105
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 27.5 bits (60), Expect = 2.4
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 225 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPN-GFNIPKLQKYVTFTRSIKD 283
+K + G G G+ A + K ++ ++ + N K V +I
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF 67
Query: 284 FNEGEKINDSKE--FWSIPCDILIPAAIEDQITINNANNVTAKIILEGANG 332
++ EK + E + IP L + + +L G
Sbjct: 68 TSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 27.8 bits (61), Expect = 2.5
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 8/132 (6%)
Query: 224 NSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPN---GFNIPKLQKYVTFT- 278
K+ + G G +G +G +I I D + N N F + +
Sbjct: 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVA 96
Query: 279 -RSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE 337
+ D + D I + + + I E
Sbjct: 97 AEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF--HIIVCGLDSIIARRWINGMLISLLNYE 154
Query: 338 ADDILRDKGIIL 349
+ + L
Sbjct: 155 DGVLDPSSIVPL 166
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 26.7 bits (58), Expect = 3.4
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 218 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 253
+ + + +I + G G VG G K+ +
Sbjct: 7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLV 42
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 26.6 bits (58), Expect = 4.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQD 255
K+ I GFG +G + G ++ I D
Sbjct: 2 KVGINGFGRIGRQVFRILHSRGVEVALIND 31
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 26.0 bits (56), Expect = 5.0
Identities = 6/63 (9%), Positives = 20/63 (31%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 285
+ ++ G G G + G +++A+ ++ + + + T +
Sbjct: 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLG 61
Query: 286 EGE 288
Sbjct: 62 IRN 64
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPN-GFNIPKLQKYVTFTRSIK 282
+SI G G +GS + G + I + D + + + G P+L +
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFW 61
Query: 283 DFNEGEKINDSKEFWSIPC 301
+ + +++
Sbjct: 62 PEQLEKCLENAEVVLLGVS 80
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 25.8 bits (56), Expect = 6.2
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 217 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 276
++L+I+N+ + G G +V A I DD+ I + +++ +
Sbjct: 4 ALDLHILNANLDPDGTGARSAVTAEGTT-IAPLITGNIDDRFQINVIDQLTDANMRRATS 62
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 25.8 bits (56), Expect = 6.3
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 224 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 255
+KI + G G +G V A L + V + D
Sbjct: 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 34
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 25.9 bits (55), Expect = 8.0
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 226 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 261
KI + G G +G+ A + G ++ + ++T
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCE 37
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 25.8 bits (56), Expect = 8.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 226 KISIQGFGNVG-SVAANLFFKAGAKIVAIQD 255
K+ I GFG +G +V ++VA+ D
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND 33
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 25.7 bits (56), Expect = 9.0
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 226 KISIQGFGNVG-SVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 284
K+ + G+G +G VA + + +++ I + + Y I F
Sbjct: 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGI-TKTKPDFEAYRAKELGIPVYAASEEFIPRF 62
Query: 285 NEGEKINDSKEFWSIP-CDILI 305
+ + DI++
Sbjct: 63 EKEGFEVAGTLNDLLEKVDIIV 84
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 26.1 bits (57), Expect = 9.4
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 23/89 (25%)
Query: 199 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 258
+ A + + G + +G + +L + +
Sbjct: 195 VELAKENNLVVFGDDGSPA-----------------LGGLLVDLVRLGKIALDRK--EFG 235
Query: 259 TIYNPNGFNI----PKLQKYVTFTRSIKD 283
T+Y N F + P +K + + +
Sbjct: 236 TVYPVNAFYMKNPGPAEEKNIPRIIAYEK 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,636,938
Number of extensions: 80860
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 53
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)