BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8195
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 46 FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 102
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ + DPNP V+G+G+ +L AGI V GL EA ++N
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 162
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
GF R + G P++++K+ +SLD +T+ + SQWITS ++R D + RA+S AILT
Sbjct: 163 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILT 219
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 115/177 (64%), Gaps = 3/177 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 24 FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ + DPNP V+G+G+ +L AGI V GL EA ++N
Sbjct: 81 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
GF R + G P++++K+ +SLD +T+ + SQWITS ++R D + RA+S AILT
Sbjct: 141 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILT 197
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 8/192 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGY 57
M LAL AK + NP VG V+VK+ +I+ G G HAE+ A + A A+G
Sbjct: 18 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGA 77
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
D+Y +TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ + AGI
Sbjct: 78 DIY-----VTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V++G++ +A +N F M+ G+P+V +K A+SLD K + S+WITS+ +R D+
Sbjct: 133 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 192
Query: 178 IWRARSCAILTG 189
+R +IL G
Sbjct: 193 QYRKTHQSILVG 204
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 116/187 (62%), Gaps = 3/187 (1%)
Query: 4 ALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNS 62
A++ AK + +PNP VG V+VK+ RII+ G+ GG HAE A+ +A +G D+ +
Sbjct: 21 AIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGEDLRGA 80
Query: 63 TVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGL 122
T+ +TLEPC + G TPPCT+ +I+SGIK V+I DPNP VSG GV + + GI V +G+
Sbjct: 81 TLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGV 139
Query: 123 MQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR 182
+++E ++ F + + + P+V +K AS+LD K + + S+WIT K R H R
Sbjct: 140 LEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDK-LRFKVHEXRNI 198
Query: 183 SCAILTG 189
A+L G
Sbjct: 199 YSAVLVG 205
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 13 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 72 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 125
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 126 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 168
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 23 MRHALTLAKRAWDEREVP-VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 81
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A++ S I +V+ D +G + L
Sbjct: 82 QNYRLLDTTLYVTLEPCVM------CAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHP 135
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQR 140
G + + +G+++ E + FF RM+R
Sbjct: 136 GMNHRVEIIEGVLRDECATLLSDFF-RMRR 164
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
V+ KE R ++ S HAE++A+L AA G + +T+Y+TL PC P C +
Sbjct: 85 VLAKEHRSAHSEWS-SKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAK 137
Query: 83 ALIKSGIKKVI 93
A+ +SGIKK++
Sbjct: 138 AIAQSGIKKLV 148
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 25/92 (27%)
Query: 20 VGCVIVKEKRIISCGYTKSPGGN-------------------HAEIDALLNAAAQGYDVY 60
VG V+VK RII+ GY HAE++AL+ A +G
Sbjct: 63 VGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISAN 122
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKV 92
N+ +Y+T PC CT+AL+++G+KK+
Sbjct: 123 NTEIYVTHFPC------INCTKALLQAGVKKI 148
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++++ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 20 MQEALKESEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 78
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 79 GNWRLLDTTLFVTIEPC 95
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYT-----KSPGGNHAEIDALLNAAAQ 55
+ +AL++AK + P VG +IVKE IIS + K P HAE+ A+ A +
Sbjct: 27 LKVALREAKRAFEKGEVP-VGAIIVKEGEIISKAHNSVEELKDPTA-HAEMLAIKEACRR 84
Query: 56 GYDVY--NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIND 98
Y +Y+TLEPC C+ AL+ S I+KVI + D
Sbjct: 85 LNTKYLEGCELYVTLEPCIM------CSYALVLSRIEKVIFSALD 123
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNAAA-- 54
MTLA+++AK + P +G +I K+ +I+ + T HAE A+ AA
Sbjct: 11 MTLAIEEAKKAAQLGEVP-IGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL 69
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ + T+Y+TLEPC C ++ S I +V+ +DP SG + L +
Sbjct: 70 GSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQS 123
Query: 115 GIS----VKQGLMQKEAYEINIGFFSRMQ 139
+ V +G++++ + FF ++
Sbjct: 124 NFNHRAIVDKGVLKEACSTLLTTFFKNLR 152
>pdb|2W4L|A Chain A, Human Dcmp Deaminase
pdb|2W4L|B Chain B, Human Dcmp Deaminase
pdb|2W4L|C Chain C, Human Dcmp Deaminase
pdb|2W4L|D Chain D, Human Dcmp Deaminase
pdb|2W4L|E Chain E, Human Dcmp Deaminase
pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGYTKSPGG------------------ 41
M +A A+ S PN +VG C++ E +I+ GY P G
Sbjct: 17 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDT 74
Query: 42 -----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
HAE++A++N DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 75 KYPYVCHAELNAIMNKNLT--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 124
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL-LNAAAQ 55
M LAL +A+ + P +G V+V + R+I+ ++ N HAEI + + A
Sbjct: 8 MELALVEARSAGERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 66
Query: 56 GYD-VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPN 100
G + + + +Y+TLEPC+ C A+ + I+++ DP
Sbjct: 67 GQERLPGADLYVTLEPCTM------CAAAISFARIRRLYYGAQDPK 106
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|B Chain B, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|C Chain C, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|D Chain D, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
Length = 270
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 102 LVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYN 161
LV AQL+ + I+ + + + +IN+GF S + R + I +D + LY+
Sbjct: 64 LVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYD 123
Query: 162 NSSQWITSKE 171
S Q I + +
Sbjct: 124 LSKQDIDNAD 133
>pdb|1O9H|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 2.4a
Length = 250
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 66 ITL-EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLM 123
+TL +PC GY L + +++VI + DP PL ++ K +A L AG++ ++ L
Sbjct: 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE-LE 111
Query: 124 QKEAYE 129
++E E
Sbjct: 112 RREQSE 117
>pdb|1O9G|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 1.5a
Length = 250
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 66 ITL-EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLM 123
+TL +PC GY L + +++VI + DP PL ++ K +A L AG++ ++ L
Sbjct: 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE-LE 111
Query: 124 QKEAYE 129
++E E
Sbjct: 112 RREQSE 117
>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|J Chain J, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|K Chain K, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
pdb|2XKY|L Chain L, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain
Length = 309
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 102 LVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYN 161
LV AQL+ + I+ + + + +IN+GF S + R + I +D + LY+
Sbjct: 103 LVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYD 162
Query: 162 NSSQWITSKE 171
S Q I + +
Sbjct: 163 LSKQDIDNAD 172
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|B Chain B, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|C Chain C, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|D Chain D, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
Length = 208
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 102 LVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYN 161
LV AQL+ + I+ + + + +IN+GF S + R + I +D + LY+
Sbjct: 59 LVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYD 118
Query: 162 NSSQWITSKE 171
S Q I + +
Sbjct: 119 LSKQDIDNAD 128
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 97 NDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWV 145
DP P + G V LISAG++ K G + + + +N G + I V
Sbjct: 64 EDPTPALEGADVV-LISAGVARKPGXDRADLFNVNAGIVKSLAERIAVV 111
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 58 DVYNSTVYITL-EPCSYFGYTPPCTEALIKSGIKKVII 94
+VY Y+ L +P SY G T C + L++SG+ + +
Sbjct: 222 EVYADAAYVVLNKPSSYTGNTLLCEDVLLESGVTDLSV 259
>pdb|1NY1|A Chain A, Crystal Structure Of B. Subtilis Polysaccharide
Deacetylase Northeast Structural Genomics Consortium
Target Sr127.
pdb|1NY1|B Chain B, Crystal Structure Of B. Subtilis Polysaccharide
Deacetylase Northeast Structural Genomics Consortium
Target Sr127
Length = 240
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 31 ISCGYTKSPGGNHAEIDA--LLNAAAQGYDVY------NSTVYITLEPCSYFGYTPPCTE 82
I+ G+ +S NH DA LN+ + YD + T+Y+T + GYTP +
Sbjct: 6 INWGFKRSV--NHQPPDAGKQLNSLIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLD 63
Query: 83 ALIKSGI 89
L K +
Sbjct: 64 VLKKHRV 70
>pdb|1W1A|1 Chain 1, Structure Of Bacillus Subtilis Pdaa In Complex With Nag,
A Family 4 Carbohydrate Esterase.
pdb|1W1A|2 Chain 2, Structure Of Bacillus Subtilis Pdaa In Complex With Nag,
A Family 4 Carbohydrate Esterase.
pdb|1W1B|1 Chain 1, Structure Of Bacillus Subtilis Pdaa With Cadmium, A
Family 4 Carbohydrate Esterase.
pdb|1W1B|2 Chain 2, Structure Of Bacillus Subtilis Pdaa With Cadmium, A
Family 4 Carbohydrate Esterase
Length = 257
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 31 ISCGYTKSPGGNHAEIDA--LLNAAAQGYDVY------NSTVYITLEPCSYFGYTPPCTE 82
I+ G+ +S NH DA LN+ + YD + T+Y+T + GYTP +
Sbjct: 23 INWGFKRSV--NHQPPDAGKQLNSLIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLD 80
Query: 83 ALIKSGI 89
L K +
Sbjct: 81 VLKKHRV 87
>pdb|1W17|A Chain A, Structure Of Bacillus Subtilis Pdaa, A Family 4
Carbohydrate Esterase.
pdb|1W17|B Chain B, Structure Of Bacillus Subtilis Pdaa, A Family 4
Carbohydrate Esterase
Length = 263
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 31 ISCGYTKSPGGNHAEIDA--LLNAAAQGYDVY------NSTVYITLEPCSYFGYTPPCTE 82
I+ G+ +S NH DA LN+ + YD + T+Y+T + GYTP +
Sbjct: 29 INWGFKRSV--NHQPPDAGKQLNSLIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLD 86
Query: 83 ALIKSGI 89
L K +
Sbjct: 87 VLKKHRV 93
>pdb|4EVS|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0985) In Complex With
4-Hydroxybenzoate
Length = 371
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 15 SPNPR-----VGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTV----- 64
SPNP +IVKEK G +P N + LL A V N+
Sbjct: 54 SPNPAQSKALAQELIVKEKVQYIAGLYFTP--NAXAVAPLLQEAKVPXVVLNAATSSITE 111
Query: 65 ---YITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNP 101
YI + F T P + + G KKV IA++D P
Sbjct: 112 KSPYIVRTSFTXFQNTVPAAKVAKQKGAKKVAIAVSDYGP 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,631,169
Number of Sequences: 62578
Number of extensions: 213635
Number of successful extensions: 551
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 31
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)