BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8195
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain
VF5) GN=ribD PE=3 SV=1
Length = 356
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 129/192 (67%), Gaps = 4/192 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK + PNP VG V+VKE +I+ GY + G HAE+ AL A G
Sbjct: 10 MKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQA---GEKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC++FG TPPCT+A+I+SGIK+V++A DPNPL+SGKGV +L +AGI V
Sbjct: 67 KGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGIEVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++EA E+N FF+ + + P++ +K A +LD K + SS+WITSKESR +HI
Sbjct: 127 VGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVAHIL 186
Query: 180 RARSCAILTGKN 191
R + A+L G N
Sbjct: 187 RREATAVLVGVN 198
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILT 188
RA+S AILT
Sbjct: 184 RAQSHAILT 192
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1
Length = 372
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 122/189 (64%), Gaps = 4/189 (2%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK S+ +SPNP VGC+IV I+ G+ K G HAEI AL G
Sbjct: 7 MKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYAL---KTSGEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T YITLEPCS+FG TPPC AL K GI +V+IA DPNP VSG GV L GI V
Sbjct: 64 KGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILVT 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G + KE+ +IN GFF RM GIPW+++K+ASS+D +T+L N S+WITS ++R+D
Sbjct: 124 IGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQHV 183
Query: 180 RARSCAILT 188
R +S AI++
Sbjct: 184 REKSDAIIS 192
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens
GN=ribD PE=3 SV=1
Length = 371
Score = 169 bits (429), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 118/179 (65%), Gaps = 7/179 (3%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGYDVYNSTVYITLEP 70
+ PNP VG V+VK+++I+ G G HAE+ A + + A+G D+Y +TLEP
Sbjct: 19 QTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGSLAKGADLY-----VTLEP 73
Query: 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130
CS++G TPPC E ++KSGIK+V IA+ DPNPLV+GKG+ L AGI VK GL++++A E+
Sbjct: 74 CSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKTGLLRQQAEEL 133
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
N F M+ G+P+V +K A+SLD KT+ S+WITS+ +R D+ +R IL G
Sbjct: 134 NKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYRKSHQRILVG 192
>sp|P44326|RIBD_HAEIN Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3
SV=1
Length = 372
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 118/181 (65%), Gaps = 3/181 (1%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESTVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 T 188
+
Sbjct: 197 S 197
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain
168) GN=ribD PE=1 SV=1
Length = 361
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 8/192 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGY 57
M LAL AK + NP VG V+VK+ +I+ G G HAE+ A + A A+G
Sbjct: 6 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGA 65
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
D+Y +TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ + AGI
Sbjct: 66 DIY-----VTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 120
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V++G++ +A +N F M+ G+P+V +K A+SLD K + S+WITS+ +R D+
Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180
Query: 178 IWRARSCAILTG 189
+R +IL G
Sbjct: 181 QYRKTHQSILVG 192
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 152 bits (385), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
MT A++ +KL +SPNP VGCVIV+ K+I+ G+ K G NHAEI+AL A G
Sbjct: 7 MTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST YITLEPC++FG TPPC +A+I+SGIK VII+ DPNP VSGKGV L GISVK
Sbjct: 64 KGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISVK 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIP 143
GLM KE+ + N GFF RM+ G+P
Sbjct: 124 IGLMSKESQKYNKGFFKRMRTGLP 147
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus
pleuropneumoniae GN=ribD PE=3 SV=2
Length = 376
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 4/190 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK + ++PNP VGCVIVK I++ GY + GG HAE +A+L+ D+
Sbjct: 19 MRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKE---DL 75
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC + G TPPC++ LI+ GIKKV I +DPNPLV+G+G QL AG+ V
Sbjct: 76 SGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEVV 135
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GL+++E +N FF +Q P+V MK A + D K + + S+WIT + +R
Sbjct: 136 EGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARARVQQT 195
Query: 180 RARSCAILTG 189
R + AI+ G
Sbjct: 196 RHQYSAIMVG 205
>sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=ribD PE=3 SV=2
Length = 371
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
I + PNP VGCVIVK II G+ K G HAE+ A + Q + + VY+TLEPC
Sbjct: 24 IFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQD---QTSSLVGADVYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
+FG TPPC + LIKS + V IA+ DP+P V +GVA+L AGISV G+ +EA
Sbjct: 81 CHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYVGIGHEEAKASL 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
+ + + G+PWV MK A+SLD +TS SQWI+ +++R D RA S A++ G
Sbjct: 141 QPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRAESQAVIVG 198
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae
GN=ribD PE=3 SV=1
Length = 376
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
I + PNP VGCV+V+E RII G+ GG HAE A+ NA+ + S VY++LEPC
Sbjct: 24 ITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNAS---MPISGSDVYVSLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+FG PPC LIK + +V +A+ DP+P V+G+G+A L AGI V G+ + EA
Sbjct: 81 SHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVGIGESEAQASL 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
+ + PW +K A+S+D + + SQWIT E+R+D RA S AIL G
Sbjct: 141 QPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRAESQAILVG 198
>sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=ribD PE=3 SV=1
Length = 375
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 110/181 (60%), Gaps = 3/181 (1%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K I + PNP VGCVIVK +I G+ + G HAE+ A+ + Q + + V++TL
Sbjct: 21 KGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD---QKCSLEGAEVFVTL 77
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPC +FG TPPC + LIKS + V + + DP+P V KGVA+L +AGI V G+ +EA
Sbjct: 78 EPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVGVGSQEAK 137
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
+ + +RG+PWV MK A+SLD +T+ SSQWI+ + +R D RA S AI+
Sbjct: 138 TSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRAESQAIIV 197
Query: 189 G 189
G
Sbjct: 198 G 198
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribD PE=3 SV=1
Length = 368
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 4/192 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M L AK +I ++PNP VG VIV+ I+ G+ G H EI AL A G
Sbjct: 8 MRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEA---GDRA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+ LEPC++ G TPPCTEA+I++GI KV++ + DPNPLV+GKG+++L AGI VK
Sbjct: 65 KGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEVK 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++ +N F R++ P+ K A +LD K + S W+TS +R+ H
Sbjct: 125 VGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQL 184
Query: 180 RARSCAILTGKN 191
R++ A++ G N
Sbjct: 185 RSQCQAVIIGGN 196
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD1 PE=3 SV=2
Length = 147
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 4/144 (2%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ +KL ++PNP VGCVIVK I+ G+ + G NHAEI+AL+ A G
Sbjct: 7 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
T Y+TLEPC++FG TPPC ALIKSGI +V+I+ DPNP +SG G+ L GI VK
Sbjct: 64 QGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVK 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIP 143
GL+ KE+ + N GFF RM+ G P
Sbjct: 124 TGLLSKESKQYNKGFFKRMKTGFP 147
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis
GN=ribD PE=3 SV=1
Length = 339
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 116/192 (60%), Gaps = 7/192 (3%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ + ++ + P P VG VIV RI+ G T+ GG+HAE+ AL A G
Sbjct: 13 MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA---GGL 69
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+ V +T+EPC+++G TPPC ALI++ + V+ A+ DPN ++G G +L +AG+ V
Sbjct: 70 AAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPNG-IAGGGAGRLSAAGLQV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQR-GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
+ G++ ++ + + QR G+P V K A+S+D +++ + SSQWI+S+ +R D H
Sbjct: 129 RSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLH 188
Query: 178 IWRARSCAILTG 189
RA + AIL G
Sbjct: 189 RRRAIADAILVG 200
>sp|O24750|RIBD_CORAM Riboflavin biosynthesis protein RibD OS=Corynebacterium
ammoniagenes GN=ribD PE=3 SV=1
Length = 337
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 5/178 (2%)
Query: 13 NSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VG VI+ I+ G T+ GG HAE+ AL +AA + +T +TLEPC
Sbjct: 32 TTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGK---TEGATAVVTLEPC 88
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
+ G T PCT+ALI++GIK V+ +DPNP +G G L+ AGI+V Q + +
Sbjct: 89 RHTGRTGPCTQALIEAGIKDVLFLHSDPNP-SAGGGEQVLVDAGINVVQLPSPEGVPDAL 147
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
I + +Q P V +K A ++D T+ + +SQWIT + +R+ H R AI+ G
Sbjct: 148 IPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHADREHRDAIIIG 205
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A++ S I +V+ D +G + L
Sbjct: 71 QNYRLLDTTLYVTLEPCVM------CAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQR 140
G + + +G+++ E + FF RM+R
Sbjct: 125 GMNHRVEIIEGVLRDECATLLSDFF-RMRR 153
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A++ S I +V+ D +G + L
Sbjct: 71 QNYRLLDTTLYVTLEPCVM------CAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQR 140
G + + +G+++ E + FF RM+R
Sbjct: 125 GMNHRVEIIEGVLRDECATLLSDFF-RMRR 153
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQ- 55
M +AL+ A + P +G ++V ++RII G+ S N HAEI AL A +
Sbjct: 10 MKIALKYAYYAKEKGEIP-IGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGAGKKI 68
Query: 56 -GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN----DPNPLVSGKGVAQ 110
Y + N+T+Y+TL+PC C A+I+S IK+++ N D +
Sbjct: 69 KNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSLKNLFCDP 122
Query: 111 LISAGISVKQGLMQKEAYEINIGFFSRMQR 140
+ +K+ +MQ+E +I I FF + ++
Sbjct: 123 QKDYKLDIKKNVMQRECSDILINFFQKKRK 152
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M A+ AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHAMTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M A+ AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHAMTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|P87241|RIB2_SCHPO Diaminohydroxyphosphoribosylamino-pyrimidine deaminase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rib2 PE=3 SV=1
Length = 405
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS-PGGNHAEIDALLNAAAQGYDV 59
M AL +AK + VG VIV+ +I+S GY++ PG HAE A + + +
Sbjct: 262 MLKALNEAKKCEPTDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAE-----ECAIEKFML 316
Query: 60 YNST-------VYITLEPCS-YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL 111
N T +Y T+EPCS CT+ ++K V++ +P+ V +GV L
Sbjct: 317 KNPTDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLL 376
Query: 112 ISAGISVKQGL 122
AGI V + L
Sbjct: 377 KKAGIVVIEKL 387
>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans
GN=ZK643.2 PE=3 SV=1
Length = 197
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 15 SPNPRVGCVIV-KEKRIISCGYTKSPGG---------------------NHAEIDALLNA 52
PN +VGCVIV K+ I+S GY P G HAE++A++N
Sbjct: 67 DPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMNAIINK 126
Query: 53 AAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLI 112
+++ TVY+TL PC+ C + LI+S +KKV + + + L L
Sbjct: 127 RCTT--LHDCTVYVTLFPCN------KCAQMLIQSRVKKVYF-LENRDELAFRASKKMLD 177
Query: 113 SAGISVKQGLMQKEAYEINI 132
A + +Q +M +EAY I +
Sbjct: 178 HARLPYEQIVMPQEAYVIEL 197
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M +AL+ A + + P +G ++V +++II G+ N HAEI AL A
Sbjct: 10 MKIALKYAYYAEENGEVP-IGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAGRNI 68
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN----DPNPLVSGKGVAQ 110
+ Y + N+T+Y+TL+PC C A+I S IK+++ + NP + K
Sbjct: 69 KNYRLVNTTLYVTLQPCMM------CCGAIINSRIKRLVFGASYKDLKKNPFLK-KIFIN 121
Query: 111 LISAGISVKQGLMQKEAYEINIGFF 135
L + +K+ +M+ E +I FF
Sbjct: 122 LEKNKLKIKKHIMRNECAKILSNFF 146
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 20 VGCVIVKEKR-IISCGY----TKSPGGNHAEIDALLNAAA--QGYDVYNSTVYITLEPCS 72
VG V+V + R II G+ +S HAEI AL N A Q Y + NST+Y+TLEPC+
Sbjct: 33 VGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNGAKNIQNYRLLNSTLYVTLEPCT 92
Query: 73 YFGYTPPCTEALIKSGIKKVIIAIND 98
C A++ S IK+++ +D
Sbjct: 93 M------CAGAILHSRIKRLVFGASD 112
>sp|P16006|DCTD_BPT4 Deoxycytidylate deaminase OS=Enterobacteria phage T4 GN=CD PE=1
SV=1
Length = 193
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
V+ KE R ++ S HAE++A+L AA G + +T+Y+TL PC P C +
Sbjct: 85 VLAKEHRSAHSEWS-SKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137
Query: 83 ALIKSGIKKVI 93
A+ +SGIKK++
Sbjct: 138 AIAQSGIKKLV 148
>sp|P00814|DCTD_BPT2 Deoxycytidylate deaminase OS=Enterobacteria phage T2 GN=CD PE=1
SV=1
Length = 188
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
V+ KE R ++ S HAE++A+L AA G + +T+Y+TL PC P C +
Sbjct: 85 VLAKEHRSAHSEWS-SKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137
Query: 83 ALIKSGIKKVI 93
A+ +SGIKK++
Sbjct: 138 AIAQSGIKKLV 148
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA
PE=3 SV=1
Length = 171
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|Q8K9A3|RIBD2_BUCAP 5-amino-6-(5-phosphoribosylamino)uracil reductase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD2 PE=3 SV=1
Length = 217
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 152 SLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
S+D + ++ N S+WITSKESR D +RA+S AILT
Sbjct: 2 SIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTS 39
>sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB2 PE=1 SV=1
Length = 591
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS-PGGNHAEIDALLNAAAQGYDV 59
M +A+++A + VG V+V ++++ GY++ PG HAE AL+ + +
Sbjct: 439 MEMAVKEAGKCGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQLHPNC 498
Query: 60 -----YNSTVYITLEPCSY--FGYTPPCTEALIKSG-IKKVIIAINDPNPLV-SGKGVAQ 110
+ +Y T+EPCS+ G P C L G I V + + +P+ V + + +
Sbjct: 499 PTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNTSLNK 558
Query: 111 LISAGISVKQ 120
L S G++ Q
Sbjct: 559 LESHGVNYIQ 568
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYT----KSPGGNHAEIDALLNAAAQG 56
+ +AL QAK S + P C+I + ++ G+ K H E+ AL NA
Sbjct: 9 LQVALDQAKKSYSEGGIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLP 68
Query: 57 YDVY-NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN 97
Y + T+Y TL PCS CT A++ G K+V++ N
Sbjct: 69 GKTYKDCTIYTTLSPCSM------CTGAILLYGFKRVVMGEN 104
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYT-----KSPGGNHAEIDALLNAAAQ 55
+ +AL++AK + P VG +IVKE IIS + K P HAE+ A+ A +
Sbjct: 7 LKVALREAKRAFEKGEVP-VGAIIVKEGEIISKAHNSVEELKDPTA-HAEMLAIKEACRR 64
Query: 56 GYDVY--NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIND 98
Y +Y+TLEPC C+ AL+ S I+KVI + D
Sbjct: 65 LNTKYLEGCELYVTLEPCIM------CSYALVLSRIEKVIFSALD 103
>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB
PE=3 SV=1
Length = 189
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 29/135 (21%)
Query: 6 QQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGN-------------------HAE 45
Q L++ S+ P VG IV++KR+I+ GY S G HAE
Sbjct: 13 QSHLLALRSTCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEGCLMIDDHCARTIHAE 72
Query: 46 IDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSG 105
++A+L + G + +Y+T PC C +++I++GIK V A + +
Sbjct: 73 MNAILQCSKFGVPTDGAEIYVTHYPC------IQCCKSIIQAGIKTVYYAEDYKTHPYAQ 126
Query: 106 KGVAQLISAGISVKQ 120
+ Q AG++V+Q
Sbjct: 127 ELFEQ---AGVTVEQ 138
>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1
Length = 178
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGYTKSPGG------------------ 41
M +A A+ S PN +VG C++ E +I+ GY P G
Sbjct: 20 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPWRRTAKNKLDT 77
Query: 42 -----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
HAE++A++N + DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 78 KYPYVCHAELNAIMNKNST--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 127
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2
Length = 178
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGYTKSPGG------------------ 41
M +A A+ S PN +VG C++ E +I+ GY P G
Sbjct: 20 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDT 77
Query: 42 -----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
HAE++A++N + DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 78 KYPYVCHAELNAIMNKNST--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 127
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC1285 PE=3 SV=2
Length = 153
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVK--EKRIISCGYTKSPGGN----HAEIDALLNA-- 52
M AL+QAK++ + + P VG V+V ++II+ + + N HAEI A+ A
Sbjct: 1 MEQALKQAKIAFDKNEVP-VGAVVVDRLHQKIIASTHNNTEEKNNALYHAEIIAINEACN 59
Query: 53 --AAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVA- 109
+++ + Y+ +Y+TLEPC+ C A+ S +K++ +D V +
Sbjct: 60 LISSKNLNDYD--IYVTLEPCAM------CAAAIAHSRLKRLFYGASDSKHGVVESNLRY 111
Query: 110 ----------QLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRM 147
++ S ++ GL+ KE FF R++ I RM
Sbjct: 112 FNSSACFHRPEIYSGILAEDSGLLMKE-------FFKRIRTVISSHRM 152
>sp|P33968|YLXG_VIBFI Uncharacterized deaminase in luxG 3'region OS=Vibrio fischeri PE=3
SV=1
Length = 147
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 28/107 (26%)
Query: 5 LQQAKL--SINSSPNPRVGCVIVKEKRIISCGYTKSPGGN-----------------HAE 45
Q A+L S + P+ +VG VI K RI+S G+ P G HAE
Sbjct: 10 FQMAELVGSWSKDPSTQVGAVITKHNRIVSVGFNGYPHGVSDSADTDEREIKYLKTLHAE 69
Query: 46 IDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKV 92
+A+L A D+ +++T PC P C +I++GI KV
Sbjct: 70 ENAILFAKR---DLEGCDIWVTHFPC------PNCAAKIIQTGISKV 107
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M A+ AK+S P VG V+V II G S + HAEI AL N A
Sbjct: 9 MKCAIFLAKISEMIGEVP-VGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKALRNGAKFL 67
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIA---------INDPNPLVSG 105
+ Y + ++T+Y+TLEPC C A+I S I +++ I N
Sbjct: 68 KNYRLLHTTLYVTLEPC------IMCYGAIIHSRISRLVFGAKYKNLQKYICCKNHFFIN 121
Query: 106 KGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQR 140
K + IS+ Q +++ E + FF R ++
Sbjct: 122 KNFRK-----ISITQEVLESECSNLLSSFFKRKRK 151
>sp|P06773|DCTD_YEAST Deoxycytidylate deaminase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DCD1 PE=1 SV=2
Length = 312
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 39/135 (28%)
Query: 19 RVGCVIVKEKRIISCGYTKSP--------GGN-----------------HAEIDALLNAA 53
RVGCVIV+E R+I+ GY +P GG HAE +ALL A
Sbjct: 184 RVGCVIVRECRVIATGYNGTPRHLTNCFNGGCPRCNDGDSRNLHTCLCLHAEENALLEA- 242
Query: 54 AQGYDVY--NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL 111
G D N+T+Y PC C+ ++++GI +V+ + + + + L
Sbjct: 243 --GRDRVGQNATLYCDTCPCL------TCSVKIVQTGISEVVYS---QSYRMDEESFKVL 291
Query: 112 ISAGISVKQGLMQKE 126
+AGI+V+Q +E
Sbjct: 292 KNAGITVRQFSFTEE 306
>sp|Q5M9G0|DCTD_RAT Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1
Length = 178
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGY-----------------------T 36
M +A A+ S P+ +VG C++ E +I+ GY T
Sbjct: 20 MAVAFLSAQRS--KDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDT 77
Query: 37 KSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
K P HAE++A++N + DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 78 KYPYVCHAELNAIMNKNSA--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 127
>sp|Q8K2D6|DCTD_MOUSE Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1
Length = 178
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGY-----------------------T 36
M +A A+ S P+ +VG C++ E +I+ GY T
Sbjct: 20 MAVAFLSAQRS--KDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDT 77
Query: 37 KSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
K P HAE++A++N + DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 78 KYPYVCHAELNAIMNKNSA--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 127
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIV--KEKRIISCGYTKSPGGN----HAEIDALLNAAA 54
M AL+QA+++ + + P VG VIV + ++IIS Y + N HAEI A+ A
Sbjct: 1 MREALKQAEIAFSKNEVP-VGAVIVDRENQKIISKSYNNTEEKNNALYHAEIIAINEACR 59
Query: 55 --QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIND 98
++ + +Y+TLEPC+ C A+ S +K++ +D
Sbjct: 60 IISSKNLSDYDIYVTLEPCAM------CAAAIAHSRLKRLFYGASD 99
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNA--AA 54
M A+++AK + P +G V+V II+ + T+ HAE+ + A A
Sbjct: 8 MKEAIKEAKKAEEKGEVP-IGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKAL 66
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSG 105
+ + +T+Y+TLEPC P C A++ S ++KV+ DP SG
Sbjct: 67 GTWRLEGATLYVTLEPC------PMCAGAVVLSRVEKVVFGAFDPKGGCSG 111
>sp|O22000|DCTD_BPMD2 Deoxycytidylate deaminase OS=Mycobacterium phage D29 GN=36.1 PE=3
SV=2
Length = 128
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 38/121 (31%)
Query: 3 LALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN-------------------- 42
L + A + +VG V+VK++R+ GY +P G
Sbjct: 11 LGIATAAAQRSDCERSKVGAVVVKDRRVRGTGYNGAPAGAAGCSTCPRRLSGAVPGVSDY 70
Query: 43 ----------HAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKV 92
HAE +ALL + D+ +T+Y+T EPC C+ + SGI++V
Sbjct: 71 SSGATRCVAVHAEANALLYCDRE--DLIGATLYVTREPCY------ACSNLIAASGIERV 122
Query: 93 I 93
+
Sbjct: 123 V 123
>sp|O59834|FCYS_SCHPO Probable cytosine deaminase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC965.14c PE=3 SV=1
Length = 162
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 6 QQAKLSINSSPNPRVGCVIVKE-KRIISCGYTKSPGGN---HAEIDALLNAAAQGYDVYN 61
QQA+ + +P GC+IV E +I + P G+ HAE A+ D+
Sbjct: 22 QQAR---DEGQHP-FGCIIVDENDNVIMSAGNRVPDGDVTQHAETRAVGLITKTRRDLEK 77
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPN 100
T+Y + EPC+ C+ A+ SGI+++I +++ N
Sbjct: 78 CTLYTSTEPCAM------CSGAIFWSGIRRMIFGLSNEN 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,513,178
Number of Sequences: 539616
Number of extensions: 2722831
Number of successful extensions: 6603
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 6544
Number of HSP's gapped (non-prelim): 104
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)