Query psy8195
Match_columns 192
No_of_seqs 197 out of 1951
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:01:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10786 ribD bifunctional dia 100.0 8.3E-63 1.8E-67 431.8 19.8 188 1-191 7-195 (367)
2 PLN02807 diaminohydroxyphospho 100.0 4E-61 8.6E-66 421.8 19.5 183 1-191 36-219 (380)
3 TIGR00326 eubact_ribD riboflav 100.0 4.4E-60 9.5E-65 411.7 21.2 188 1-191 1-189 (344)
4 COG0117 RibD Pyrimidine deamin 100.0 1E-51 2.2E-56 313.3 14.9 135 1-138 10-145 (146)
5 cd01284 Riboflavin_deaminase-r 100.0 1.9E-37 4.2E-42 230.9 14.6 113 1-115 1-115 (115)
6 PRK10860 tRNA-specific adenosi 100.0 4.1E-37 9E-42 243.7 14.3 133 1-140 17-159 (172)
7 COG0590 CumB Cytosine/adenosin 100.0 9.1E-35 2E-39 226.3 11.7 129 1-136 12-151 (152)
8 PRK14719 bifunctional RNAse/5- 100.0 1.3E-33 2.7E-38 246.5 13.5 132 46-191 35-187 (360)
9 PHA02588 cd deoxycytidylate de 100.0 5.7E-31 1.2E-35 208.0 15.2 120 1-131 7-162 (168)
10 TIGR02571 ComEB ComE operon pr 100.0 1.7E-30 3.7E-35 201.9 14.1 109 1-120 10-137 (151)
11 cd01285 nucleoside_deaminase N 100.0 1.8E-28 3.8E-33 181.0 12.5 95 1-102 1-102 (109)
12 cd01286 deoxycytidylate_deamin 100.0 6.4E-28 1.4E-32 183.6 11.9 93 1-101 5-122 (131)
13 cd00786 cytidine_deaminase-lik 99.9 2.5E-26 5.3E-31 165.9 11.0 89 1-96 1-95 (96)
14 KOG1018|consensus 99.9 8.4E-26 1.8E-30 178.1 10.7 137 1-143 15-167 (169)
15 PF00383 dCMP_cyt_deam_1: Cyti 99.9 7.6E-25 1.6E-29 158.8 9.3 89 1-96 8-102 (102)
16 COG2131 ComEB Deoxycytidylate 99.9 6.4E-24 1.4E-28 165.2 11.6 112 1-120 13-150 (164)
17 KOG3127|consensus 99.7 8E-18 1.7E-22 135.7 8.3 113 1-123 71-209 (230)
18 cd01283 cytidine_deaminase Cyt 99.7 5.1E-16 1.1E-20 114.7 11.5 92 2-101 2-104 (112)
19 PRK14059 hypothetical protein; 99.6 2.9E-16 6.4E-21 131.5 6.0 53 138-191 26-78 (251)
20 KOG2771|consensus 99.2 3.7E-11 8.1E-16 102.8 5.4 119 1-128 171-338 (344)
21 PF14439 Bd3614-deam: Bd3614-l 99.0 3.5E-09 7.6E-14 78.0 7.8 77 20-102 10-119 (136)
22 TIGR01354 cyt_deam_tetra cytid 98.8 8.7E-08 1.9E-12 72.5 11.5 90 2-99 5-105 (127)
23 PRK06848 hypothetical protein; 97.9 0.00015 3.2E-09 55.8 10.1 81 2-90 12-110 (139)
24 PRK12411 cytidine deaminase; P 97.9 0.00035 7.6E-09 53.2 11.1 77 3-88 9-97 (132)
25 PRK05578 cytidine deaminase; V 97.8 0.00039 8.3E-09 52.9 10.6 78 3-88 9-97 (131)
26 TIGR01355 cyt_deam_dimer cytid 97.4 0.0014 3E-08 55.9 9.2 78 3-88 28-112 (283)
27 PLN02402 cytidine deaminase 97.1 0.0046 1E-07 53.2 9.2 69 12-88 40-115 (303)
28 PRK08298 cytidine deaminase; V 97.0 0.007 1.5E-07 46.3 9.2 79 3-90 10-102 (136)
29 KOG0833|consensus 96.9 0.017 3.8E-07 45.6 10.7 70 17-93 41-121 (173)
30 COG0295 Cdd Cytidine deaminase 96.9 0.012 2.6E-07 44.9 9.3 86 4-96 12-108 (134)
31 PRK09027 cytidine deaminase; P 96.8 0.012 2.5E-07 50.7 9.5 69 12-88 65-140 (295)
32 PF08210 APOBEC_N: APOBEC-like 96.6 0.022 4.8E-07 45.8 9.7 124 15-145 21-170 (188)
33 PF14437 MafB19-deam: MafB19-l 96.5 0.0073 1.6E-07 46.6 5.5 51 41-97 80-135 (146)
34 PLN02182 cytidine deaminase 96.3 0.053 1.1E-06 47.4 10.6 71 12-89 60-144 (339)
35 PRK09027 cytidine deaminase; P 95.9 0.062 1.3E-06 46.3 8.9 84 2-92 194-289 (295)
36 TIGR01355 cyt_deam_dimer cytid 93.2 0.69 1.5E-05 39.6 8.8 81 2-89 179-273 (283)
37 PF14431 YwqJ-deaminase: YwqJ- 90.2 0.38 8.2E-06 36.1 3.5 43 41-89 66-125 (125)
38 PLN02402 cytidine deaminase 90.0 1.6 3.6E-05 37.7 7.6 53 2-55 197-254 (303)
39 PF14440 XOO_2897-deam: Xantho 87.7 0.41 8.9E-06 35.8 2.1 59 39-100 43-103 (118)
40 PF08211 dCMP_cyt_deam_2: Cyti 85.7 5.8 0.00013 29.9 7.4 67 2-70 38-110 (124)
41 PF14424 Toxin-deaminase: The 76.9 5.2 0.00011 30.4 4.5 42 41-88 73-119 (133)
42 PF08973 TM1506: Domain of unk 71.3 11 0.00024 28.8 5.0 93 1-120 1-93 (134)
43 PF09587 PGA_cap: Bacterial ca 63.4 76 0.0017 26.0 9.1 109 77-189 64-190 (250)
44 PRK00881 purH bifunctional pho 57.9 76 0.0016 29.6 8.7 81 5-94 401-482 (513)
45 cd07381 MPP_CapA CapA and rela 57.1 1E+02 0.0023 24.9 10.5 109 77-189 66-181 (239)
46 PF14428 SCP1201-deam: SCP1.20 46.9 36 0.00078 25.9 4.1 51 41-96 68-122 (135)
47 TIGR00159 conserved hypothetic 42.4 68 0.0015 26.4 5.3 33 20-52 126-167 (211)
48 smart00854 PGA_cap Bacterial c 41.5 1.9E+02 0.0042 23.4 9.4 108 78-189 63-179 (239)
49 PF13540 RCC1_2: Regulator of 39.7 53 0.0012 17.9 3.1 19 20-38 10-28 (30)
50 PF14441 OTT_1508_deam: OTT_15 39.3 74 0.0016 23.9 4.9 43 39-88 65-107 (142)
51 PRK00203 rnhA ribonuclease H; 38.8 1E+02 0.0022 23.2 5.7 35 20-54 21-56 (150)
52 PRK13907 rnhA ribonuclease H; 38.5 1.5E+02 0.0033 21.4 6.6 35 20-54 19-54 (128)
53 TIGR00355 purH phosphoribosyla 34.8 1.6E+02 0.0035 27.5 7.0 102 4-119 398-502 (511)
54 COG1433 Uncharacterized conser 34.6 1.1E+02 0.0024 22.8 5.0 41 75-121 52-92 (121)
55 smart00552 ADEAMc tRNA-specifi 34.3 1.6E+02 0.0034 26.3 6.8 39 15-53 26-82 (374)
56 cd06222 RnaseH RNase H (RNase 33.8 1.5E+02 0.0032 20.0 5.6 37 19-55 16-55 (130)
57 PF02593 dTMP_synthase: Thymid 33.7 63 0.0014 26.6 3.9 91 59-158 49-145 (217)
58 PF08652 RAI1: RAI1 like PD-(D 33.2 35 0.00076 22.8 1.9 17 85-101 48-64 (69)
59 PRK08309 short chain dehydroge 33.1 45 0.00098 26.2 2.9 35 155-190 138-173 (177)
60 PRK13957 indole-3-glycerol-pho 33.0 29 0.00063 29.2 1.8 24 168-191 209-232 (247)
61 cd04679 Nudix_Hydrolase_20 Mem 32.3 43 0.00093 24.0 2.5 40 16-55 1-54 (125)
62 TIGR02990 ectoine_eutA ectoine 31.8 47 0.001 27.6 2.9 41 79-120 110-150 (239)
63 PF05378 Hydant_A_N: Hydantoin 30.6 2.6E+02 0.0057 21.8 7.2 48 142-189 106-154 (176)
64 COG3616 Predicted amino acid a 27.7 4.4E+02 0.0096 23.5 8.4 98 79-189 76-176 (368)
65 PF08121 Toxin_33: Waglerin fa 26.9 28 0.0006 17.7 0.4 10 67-81 5-14 (22)
66 KOG0879|consensus 26.5 82 0.0018 24.3 3.1 29 56-97 116-144 (177)
67 PRK11572 copper homeostasis pr 24.9 2.5E+02 0.0055 23.6 6.1 60 61-120 51-120 (248)
68 cd00248 Mth938-like Mth938-lik 24.9 2.6E+02 0.0057 20.0 5.5 53 79-131 42-95 (109)
69 COG2164 Uncharacterized conser 24.9 20 0.00044 26.3 -0.4 14 71-84 80-93 (126)
70 COG1624 Uncharacterized conser 24.6 69 0.0015 27.0 2.7 33 20-52 173-215 (247)
71 COG0424 Maf Nucleotide-binding 24.2 1.8E+02 0.0038 23.6 4.9 46 140-190 63-108 (193)
72 PRK08560 tyrosyl-tRNA syntheta 24.2 1.5E+02 0.0032 25.8 4.8 68 118-185 172-244 (329)
73 cd05126 Mth938 Mth938 domain. 24.1 2.6E+02 0.0057 20.5 5.5 54 78-131 48-102 (117)
74 PF02457 DisA_N: DisA bacteria 24.0 49 0.0011 24.6 1.5 18 20-37 56-73 (122)
75 PF04430 DUF498: Protein of un 24.0 1.6E+02 0.0034 21.1 4.2 53 79-131 42-96 (110)
76 PF02579 Nitro_FeMo-Co: Dinitr 23.5 87 0.0019 21.1 2.6 46 70-121 34-80 (94)
77 cd00851 MTH1175 This uncharact 22.8 2.1E+02 0.0045 19.5 4.6 39 78-122 53-91 (103)
78 COG1710 Uncharacterized protei 22.7 1.1E+02 0.0024 23.0 3.1 55 60-120 27-82 (139)
79 cd00562 NifX_NifB This CD repr 22.3 2.6E+02 0.0056 18.9 5.8 40 76-121 49-88 (102)
80 PRK14840 undecaprenyl pyrophos 22.1 61 0.0013 27.3 1.9 29 1-29 1-31 (250)
81 PRK00724 formate dehydrogenase 22.0 4.8E+02 0.01 21.9 9.0 84 20-120 160-248 (263)
82 KOG1228|consensus 21.4 56 0.0012 27.1 1.5 14 60-73 74-87 (256)
83 COG1105 FruK Fructose-1-phosph 20.9 2.7E+02 0.0058 24.3 5.6 88 104-191 36-138 (310)
84 PLN02891 IMP cyclohydrolase 20.6 3E+02 0.0065 26.0 6.1 78 5-93 436-515 (547)
No 1
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=8.3e-63 Score=431.81 Aligned_cols=188 Identities=46% Similarity=0.801 Sum_probs=182.3
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++|+++|+++ ..++++|+||||||+||+||++|||...+++|||++||+++. ..++|||||||||||+|+|||||
T Consensus 7 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~ai~~a~---~~~~g~tlyvTlEPC~~~g~t~m 83 (367)
T PRK10786 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAG---EKAKGATAYVTLEPCSHHGRTPP 83 (367)
T ss_pred HHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCCCCCHHHHHHHHHh---hhcCCCEEEEecCCccCCCCChH
Confidence 89999999999 678899999999999999999999999999999999999994 45799999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~ 159 (192)
|+.+|+++||+||||+..||++.+.|++.+.|+++||+|..|++++||.++++.||++.++++|||++|+|+|+||+|++
T Consensus 84 C~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~V~~k~A~SlDGkia~ 163 (367)
T PRK10786 84 CCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAM 163 (367)
T ss_pred HHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcEEEcCCcHHHHHHHHHHHHHHhhcccceEEEEEeecCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
.+|+|+||||++++.++|+||+++||||||++
T Consensus 164 ~~g~s~~is~~~~~~~~h~lRa~~DaIlVGa~ 195 (367)
T PRK10786 164 ASGESQWITSPQARRDVQRLRAQSHAILTSSA 195 (367)
T ss_pred CCCcccccCCHHHHHHHHHHHhHCCEEEECcC
Confidence 99999999999999999999999999999987
No 2
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=100.00 E-value=4e-61 Score=421.75 Aligned_cols=183 Identities=36% Similarity=0.601 Sum_probs=175.8
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++|+++|+++ ..+.+||+||||||+||+||++|||...+.+|||++||++| +..++|||||||||||+|+|||||
T Consensus 36 M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~g~~HAEi~Ai~~a---~~~~~g~tlyvTLEPC~h~Gktp~ 112 (380)
T PLN02807 36 MRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAGQPHAEVFALRDA---GDLAENATAYVSLEPCNHYGRTPP 112 (380)
T ss_pred HHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHh---hhhcCCcEEEEEcCCCcCCCCChH
Confidence 89999999999 77889999999999999999999999999999999999999 556789999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~ 159 (192)
|+++|+++||+|||||..||++.+.|+|+++|+++||+|..|++++||.++++.||++..+++|||++|+|+|+||+|++
T Consensus 113 C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~V~~g~~~~e~~~l~~~f~~~~~~~rP~V~lK~A~SlDGkia~ 192 (380)
T PLN02807 113 CTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEVTVGVEEELCRKLNEAFIHRMLTGKPFVTLRYSMSMNGCLLN 192 (380)
T ss_pred HHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCEEEeCcCHHHHHHHHHHHHHHHhhccccEEEEEEEcCCCCeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
..|.|+ +.++.++|+||+++|||||| +
T Consensus 193 ~~g~s~----~~s~~~vh~lRa~~DAIlVG-~ 219 (380)
T PLN02807 193 QIGEGA----DDAGGYYSQLLQEYDAVILS-S 219 (380)
T ss_pred CCCCCh----hhhhHHHHHHHhhCCEEEEc-C
Confidence 999987 67778999999999999999 6
No 3
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=100.00 E-value=4.4e-60 Score=411.70 Aligned_cols=188 Identities=48% Similarity=0.807 Sum_probs=181.9
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++|+++|+++ ..+.+||+||||||+||+||++|+|+..++.|||++||++| +..++|||||||||||+|+|||||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~~~~~HAE~~ai~~a---~~~~~g~tlyvtlEPC~~~g~~~~ 77 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKAGEPHAEVHALRQA---GENAKGATAYVTLEPCSHQGRTPP 77 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCCCCCCCHHHHHHHHh---ccccCCcEEEEeCCCCCCCCCCcH
Confidence 89999999999 66788999999999999999999999999999999999999 556799999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~ 159 (192)
|+++|+++||+|||||..||++.+.|.+++.|++.||+|..+++++||.++++.||.+.++++|||++|+|+|+||+|+.
T Consensus 78 C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~v~~~~a~SLDG~Ia~ 157 (344)
T TIGR00326 78 CAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGILKEEAERLNKGFLKRMRTGLPYVQLKLAASLDGKIAT 157 (344)
T ss_pred HHHHHHHcCCCEEEEEeCCCCccccchHHHHHhcCCcEEEeCCCHHHHHHHHHHHHHhhhcCCCEEEEEEeeCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
++|.+.|||+++++.++|.+|+++|+||+|.+
T Consensus 158 ~~g~~~wi~~~~~~~~~~~lra~~DailvG~~ 189 (344)
T TIGR00326 158 ASGESKWITSEAARTDAQQLRAQSDAILVGGG 189 (344)
T ss_pred cCCCccccCCHHHHHHHHHHHHHCCEEEEChh
Confidence 99999999999999999999999999999985
No 4
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=1e-51 Score=313.26 Aligned_cols=135 Identities=51% Similarity=0.886 Sum_probs=132.4
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++||++|++. +.+.|||+||||||+||+||++|+|...|.+|||+.||++| ++..+|+|+|||||||+|||||||
T Consensus 10 M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~a---g~~a~Gat~yVTLEPCsH~GrTPP 86 (146)
T COG0117 10 MERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMA---GEAARGATAYVTLEPCSHYGRTPP 86 (146)
T ss_pred HHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCCCCcHHHHHHHHc---CcccCCCEEEEEecCcccCCCCcc
Confidence 89999999998 99999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhcccccccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRM 138 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~ 138 (192)
|+++|+.+||+|||+++.||||.++|+|+..|+++||+|..|+|++|+..+++.|+.+.
T Consensus 87 C~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 87 CADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred hHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCeEEEehhHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999998765
No 5
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=100.00 E-value=1.9e-37 Score=230.87 Aligned_cols=113 Identities=50% Similarity=0.888 Sum_probs=105.3
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEe-CCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTP 78 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~-~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp 78 (192)
|++|+++|+++ ....++++||||||+ ||+||++|+|+..++.|||++||+++.++ .++++|||+|+|||+++|+||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~--~l~g~tly~TlEPC~~~~~~~ 78 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEK--LARGATLYVTLEPCSHHGKTP 78 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhc--CCCCeEEEEeCCCCCCCCCch
Confidence 89999999999 556667779999998 59999999999999999999999999654 789999999999999999999
Q ss_pred hhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCC
Q psy8195 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG 115 (192)
Q Consensus 79 ~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~g 115 (192)
||+.+|+|+||++|||+..||++.+.++|+++|+++|
T Consensus 79 mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 79 PCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred HHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 9999999999999999999999988889999999876
No 6
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=4.1e-37 Score=243.69 Aligned_cols=133 Identities=29% Similarity=0.517 Sum_probs=119.3
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCC----CCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP----GGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++...++.| ||||||++|+||++|+|... ++.|||++||+++.++ ...++|+|||||+|||
T Consensus 17 m~~A~~~A~~a~~~g~~p-vGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~TlEPC--- 92 (172)
T PRK10860 17 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPC--- 92 (172)
T ss_pred HHHHHHHHHHhhccCCCC-EEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEeeCCCc---
Confidence 789999999997766656 99999999999999999853 5799999999999765 2467899999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCC----CeeeeccchHHHHhhcccccccccc
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG----ISVKQGLMQKEAYEINIGFFSRMQR 140 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~g----i~v~~g~l~~e~~~l~~~f~~~~~~ 140 (192)
|||+++|+|+||++||||..||+.+..|++++.++..+ ++|..|++++||.+|++.||.+.++
T Consensus 93 ---~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~~ 159 (172)
T PRK10860 93 ---VMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRRQ 159 (172)
T ss_pred ---HHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999988888899888766 7899999999999999999987653
No 7
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-35 Score=226.27 Aligned_cols=129 Identities=34% Similarity=0.516 Sum_probs=118.5
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcC--CCCCCeEEEEeCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQG--YDVYNSTVYITLEPCSY 73 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~--~~~~~~tlYvTlEPC~~ 73 (192)
|++||++|+++.+.++.| ||||||+ +|+|++.|+|.. +++.|||++||++|++.. +.+++||||||+|||
T Consensus 12 m~~al~~A~~a~~~ge~P-vGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT~EPC-- 88 (152)
T COG0590 12 MREALKEAKKAGDEGEVP-VGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVTLEPC-- 88 (152)
T ss_pred HHHHHHHHHHHHhcCCCC-EEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEEecCCH--
Confidence 789999999998777778 9999999 999999999985 589999999999999874 579999999999999
Q ss_pred CCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh----CCCeeeeccchHHHHhhcccccc
Q psy8195 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFS 136 (192)
Q Consensus 74 ~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~----~gi~v~~g~l~~e~~~l~~~f~~ 136 (192)
|||++||+|+||+|||||.+||+.+..|....++.+ +.++|..|++++||.++++.||.
T Consensus 89 ----~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 89 ----PMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred ----HHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 699999999999999999999999988888888887 35788889999999999999985
No 8
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=1.3e-33 Score=246.50 Aligned_cols=132 Identities=23% Similarity=0.300 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcc---hhHHhhhhCCCeeeecc
Q psy8195 46 IDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSG---KGVAQLISAGISVKQGL 122 (192)
Q Consensus 46 ~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g---~g~~~l~~~gi~v~~g~ 122 (192)
..||++. | .+|.++|+|+|||+ -|+.+|+.+||+|||+++ |||+...| +++++|+++||+| .++
T Consensus 35 ~~~l~~l---g--i~g~~i~~s~~p~~------~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~V-~~~ 101 (360)
T PRK14719 35 ILSLKNL---K--INANFITVSNTPVF------QIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIKV-NNL 101 (360)
T ss_pred HHHHHHc---C--CCCcEEEEeCCchH------HHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCEE-Eee
Confidence 3567776 3 57999999999998 499999999999999999 99983222 3499999999999 579
Q ss_pred chHHHHhhccccccc-------cc-----------cCCceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhhcC
Q psy8195 123 MQKEAYEINIGFFSR-------MQ-----------RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSC 184 (192)
Q Consensus 123 l~~e~~~l~~~f~~~-------~~-----------~~rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~~d 184 (192)
+++||+++++.|+++ .+ +++|||++|+|+|+||+|++.+|.|+ |||+++|+++|+||+++|
T Consensus 102 l~~e~~~l~~~~~~~ie~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLDGkIA~~~G~s~-IT~~~ar~~vh~lRa~~D 180 (360)
T PRK14719 102 IRKEIIKYSRGDLKDIESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIRKDVD 180 (360)
T ss_pred hHHHHHHHhHHhhhcchhhhhhheeccccccccccCCCCeEEEEEEEcCcCcccCCCCCCC-cCCHHHHHHHHHHHHHCC
Confidence 999999999987766 66 68999999999999999999999998 999999999999999999
Q ss_pred eEEEccC
Q psy8195 185 AILTGKN 191 (192)
Q Consensus 185 aIlvG~~ 191 (192)
|||||++
T Consensus 181 AILVG~~ 187 (360)
T PRK14719 181 AIMVGIG 187 (360)
T ss_pred EEEECcc
Confidence 9999987
No 9
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.97 E-value=5.7e-31 Score=207.96 Aligned_cols=120 Identities=35% Similarity=0.525 Sum_probs=100.6
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCC------------------------------------CCccH
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP------------------------------------GGNHA 44 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~------------------------------------~~~HA 44 (192)
|++|+++|+++. .+..+||||||+||+||++|||..+ ++.||
T Consensus 7 M~~A~~~A~~s~--~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HA 84 (168)
T PHA02588 7 LQIAYLVSQESK--CVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKNEIHA 84 (168)
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCCCccH
Confidence 789999999983 3455599999999999999999753 36799
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccch
Q psy8195 45 EIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQ 124 (192)
Q Consensus 45 E~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~ 124 (192)
|++||.++.+++..++|+|||||+||| |||+.+|+++||++|||+..++.. .+.|+++|+++||+|.. +..
T Consensus 85 E~nAi~~a~~~~~~~~g~tLYvTlePC------~~Ca~aI~~~gI~rVvy~~~~~~~--~~~~~~~L~~~Gi~v~~-~~~ 155 (168)
T PHA02588 85 ELNAILFAARNGISIEGATMYVTASPC------PDCAKAIAQSGIKKLVYCEKYDRN--GPGWDDILRKSGIEVIQ-IPK 155 (168)
T ss_pred HHHHHHHHhhcCCCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEeeccCCC--cHHHHHHHHHCCCEEEE-eCH
Confidence 999999998777789999999999999 699999999999999999763222 34589999999999986 556
Q ss_pred HHHHhhc
Q psy8195 125 KEAYEIN 131 (192)
Q Consensus 125 ~e~~~l~ 131 (192)
+++.+++
T Consensus 156 ~~~~~~~ 162 (168)
T PHA02588 156 EELNKLN 162 (168)
T ss_pred HHHHhhh
Confidence 6655553
No 10
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.97 E-value=1.7e-30 Score=201.89 Aligned_cols=109 Identities=35% Similarity=0.517 Sum_probs=96.0
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCC-------------------CCccHHHHHHHHHHhcCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-------------------GGNHAEIDALLNAAAQGYDVYN 61 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~-------------------~~~HAE~~ai~~a~~~~~~~~~ 61 (192)
|++|+++|+++ ..++++||||||+||+||++|||... .+.|||++||.++++.+..++|
T Consensus 10 M~~A~~~A~rs--~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~~~l~g 87 (151)
T TIGR02571 10 MAQSHLLALRS--TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFGVSTEG 87 (151)
T ss_pred HHHHHHHHHhc--CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcCCCcCC
Confidence 78999999987 45666799999999999999999963 3579999999999877678899
Q ss_pred eEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 62 ~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
+|||||+||| +||+.+|+++||++|||+..++++ ..+.++|+++||+|..
T Consensus 88 ~tlYvT~ePC------~~Ca~ai~~agI~~Vvy~~~~~~~---~~~~~~l~~~gi~v~~ 137 (151)
T TIGR02571 88 AEIYVTHFPC------LQCTKSIIQAGIKKIYYAQDYHNH---PYAIELFEQAGVELKK 137 (151)
T ss_pred cEEEEeCCCc------HHHHHHHHHhCCCEEEEccCCCCc---HHHHHHHHHCCCEEEE
Confidence 9999999999 599999999999999999765543 3478999999999986
No 11
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.96 E-value=1.8e-28 Score=180.96 Aligned_cols=95 Identities=38% Similarity=0.592 Sum_probs=85.2
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcC--CCCCCeEEEEeCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQG--YDVYNSTVYITLEPCSY 73 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~--~~~~~~tlYvTlEPC~~ 73 (192)
|++|+++|+++...+..| ||||||+ ||+||+.|+|... ++.|||++||+++.++. ..++++|||+|+|||
T Consensus 1 m~~al~~a~~~~~~~~~~-vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC-- 77 (109)
T cd01285 1 MRLAIELARKALAEGEVP-FGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPC-- 77 (109)
T ss_pred CHHHHHHHHHHHHcCCCc-EEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCCCh--
Confidence 899999999996656555 9999998 5999999999974 89999999999998763 368999999999999
Q ss_pred CCCChhhHHHHHHcCCCEEEEEeeCCCCC
Q psy8195 74 FGYTPPCTEALIKSGIKKVIIAINDPNPL 102 (192)
Q Consensus 74 ~g~tp~C~~ai~~~gI~rvv~~~~dp~~~ 102 (192)
+||+++|+|+||++|||+..+|+.+
T Consensus 78 ----~mC~~ai~~~gi~~Vvy~~~~~~~g 102 (109)
T cd01285 78 ----PMCAGALLWARIKRVVYGASDPKLG 102 (109)
T ss_pred ----HHHHHHHHHHCCCEEEEEecCCccc
Confidence 6999999999999999999998754
No 12
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.95 E-value=6.4e-28 Score=183.56 Aligned_cols=93 Identities=45% Similarity=0.673 Sum_probs=83.4
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCC-------------------------CCccHHHHHHHHHHhc
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-------------------------GGNHAEIDALLNAAAQ 55 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~-------------------------~~~HAE~~ai~~a~~~ 55 (192)
|++|+++|+++. .++++||||||++|+||++|+|... ++.|||++||.++.++
T Consensus 5 m~~A~~~A~~s~--~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~~ 82 (131)
T cd01286 5 MAIARLAALRST--CPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAARH 82 (131)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhHc
Confidence 789999999874 3567799999999999999999863 6899999999999887
Q ss_pred CCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCC
Q psy8195 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNP 101 (192)
Q Consensus 56 ~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~ 101 (192)
+..++++|||||+||| +||+.+|+++||++|||+...+..
T Consensus 83 ~~~~~~~tLyvT~ePC------~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 83 GVSLEGATLYVTLFPC------IECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred CCCcCCeEEEEecCcH------HHHHHHHHHhCCCEEEEeeccCcc
Confidence 7788999999999999 699999999999999999876653
No 13
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.94 E-value=2.5e-26 Score=165.91 Aligned_cols=89 Identities=35% Similarity=0.558 Sum_probs=79.4
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeC--CeEEEEeecCCC----CCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKE--KRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~--g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~ 74 (192)
|+.|+++|+++....++++||||||++ |++++.|+|... ++.|||++||+++.+++. ++++|||||+|||
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~-~~~~tly~tlePC--- 76 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGD-TKGQMLYVALSPC--- 76 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCC-CCceEEEEECCCh---
Confidence 899999999984445566699999985 999999999965 899999999999977643 8999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEe
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAI 96 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~ 96 (192)
+||+++|+|+||++|||+.
T Consensus 77 ---~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 77 ---GACAQLIIELGIKDVIVVL 95 (96)
T ss_pred ---HHHHHHHHHhCCCCEEEee
Confidence 5999999999999999985
No 14
>KOG1018|consensus
Probab=99.93 E-value=8.4e-26 Score=178.07 Aligned_cols=137 Identities=30% Similarity=0.476 Sum_probs=110.0
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecC----CCCCccHHHHHHHH---HHhc--CCCCCCeEEEEeCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTK----SPGGNHAEIDALLN---AAAQ--GYDVYNSTVYITLEP 70 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~----~~~~~HAE~~ai~~---a~~~--~~~~~~~tlYvTlEP 70 (192)
|+.|+++|+++.+.+.+++||||+|+ ||+|++.|+|. .+++.|||+.+|++ .+++ ..+++++|||||+||
T Consensus 15 m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~~tlyvt~eP 94 (169)
T KOG1018|consen 15 MVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSETTLYVTCEP 94 (169)
T ss_pred HHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceeccCCEEEEEecc
Confidence 78999999999888844559999999 99999999998 46899999999999 5544 367899999999999
Q ss_pred CCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHH----hhhhCCCee--eeccchHHHHhhccccccccccCCc
Q psy8195 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVA----QLISAGISV--KQGLMQKEAYEINIGFFSRMQRGIP 143 (192)
Q Consensus 71 C~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~----~l~~~gi~v--~~g~l~~e~~~l~~~f~~~~~~~rP 143 (192)
| |||++||.|+||++||||...+++...+.... .|+..+.++ ..++..+++..+.+.|+-+.+...|
T Consensus 95 c------~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~n~~~~ 167 (169)
T KOG1018|consen 95 C------PMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRDNPKDP 167 (169)
T ss_pred c------HHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhccccccCCC
Confidence 9 69999999999999999999887765443222 233345444 4466677777788888877766554
No 15
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.92 E-value=7.6e-25 Score=158.79 Aligned_cols=89 Identities=40% Similarity=0.666 Sum_probs=76.2
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcC-CCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQG-YDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~-~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++. ..++++||||||+ +|++|+.|+|... +..|||++||.++.+++ ..++++|||+|+|||
T Consensus 8 m~~a~~~a~~s~-~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~lyvt~ePC--- 83 (102)
T PF00383_consen 8 MRIAIELAKRSR-PCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARNGGSSLKGCTLYVTLEPC--- 83 (102)
T ss_dssp HHHHHHHHHTHB-TTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHTTSSGETTEEEEEEE--B---
T ss_pred HHHHHHHHHhcc-ccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhhccccccCcccccCCCCH---
Confidence 688999999987 5566669999999 9999999999853 57899999999999873 457899999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEe
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAI 96 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~ 96 (192)
+||+++|+++||+||||+.
T Consensus 84 ---~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 84 ---GMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp ---HHHHHHHHHHTSSEEEEEE
T ss_pred ---HHHHHHHHHHCcCeEEEeC
Confidence 5999999999999999984
No 16
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.91 E-value=6.4e-24 Score=165.22 Aligned_cols=112 Identities=39% Similarity=0.604 Sum_probs=96.3
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCCC--------------------------CccHHHHHHHHHHh
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPG--------------------------GNHAEIDALLNAAA 54 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~~--------------------------~~HAE~~ai~~a~~ 54 (192)
|+.|.-.|.+ .+.|.-.||||||+|++||++|||..+. +.|||+|||-++++
T Consensus 13 m~~A~l~a~R--stc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAil~aa~ 90 (164)
T COG2131 13 MAIAELVALR--STCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAILQAAR 90 (164)
T ss_pred HHHHHHHHHH--ccCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHHHHHHh
Confidence 4555555554 4888999999999999999999998531 46999999999999
Q ss_pred cCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 55 ~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
.+..++|+|||||+.||. +|+..|+++|||+|||+...++....-...++|+++||++..
T Consensus 91 ~g~~~~~atlYvt~~PC~------~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~~ 150 (164)
T COG2131 91 HGVGLEGATLYVTHFPCS------NCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQ 150 (164)
T ss_pred cCCCCCCcEEEEEecccH------HHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEEe
Confidence 998889999999999996 999999999999999999888775444577899999999875
No 17
>KOG3127|consensus
Probab=99.73 E-value=8e-18 Score=135.68 Aligned_cols=113 Identities=35% Similarity=0.515 Sum_probs=90.7
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCCC------------------------CccHHHHHHHHHHhc
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSPG------------------------GNHAEIDALLNAAAQ 55 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~~------------------------~~HAE~~ai~~a~~~ 55 (192)
|+.|.-.|+++ .+|+..|||+||+ ++.||+.|||..+- ..|||.|||.++.
T Consensus 71 M~iA~LsA~RS--kDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~NAi~~~~-- 146 (230)
T KOG3127|consen 71 MAIAFLSAKRS--KDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEENAILNKG-- 146 (230)
T ss_pred HHHHHHHHHhc--cCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHHHHHHHhC--
Confidence 56677777765 7899999988887 99999999998530 4799999999984
Q ss_pred CCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCC-CCcchhHHhhhhCCCeeeeccc
Q psy8195 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNP-LVSGKGVAQLISAGISVKQGLM 123 (192)
Q Consensus 56 ~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~-~~~g~g~~~l~~~gi~v~~g~l 123 (192)
.....+|++|||+-||+ -|+..|+++||+.|||+..+.-+ ...-.+...|..+|+++..-++
T Consensus 147 ~~~~~~~~lYvtl~PC~------~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~i~ 209 (230)
T KOG3127|consen 147 RERVGGCSLYVTLCPCN------ECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQFIP 209 (230)
T ss_pred ccccCCceEEEeecchH------HHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcceEEecc
Confidence 35678899999999997 89999999999999999877422 2233466778888988776443
No 18
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.68 E-value=5.1e-16 Score=114.73 Aligned_cols=92 Identities=25% Similarity=0.343 Sum_probs=79.3
Q ss_pred HHHHHHHhhc-ccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCCCCCeEEEEe-----CCC
Q psy8195 2 TLALQQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT-----LEP 70 (192)
Q Consensus 2 ~~Ai~~A~~~-~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~~~~tlYvT-----lEP 70 (192)
..|++.++.+ ...+..| |||+|+. +|+|+ .|+|... ++.|||+.||.++...+.....+++|+| +||
T Consensus 2 ~~a~~~~~~a~~~~~~~~-vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~~~~~~~i~vs~~~~~~sP 79 (112)
T cd01283 2 EAALAAAEFAYAPYSNFT-VGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSP 79 (112)
T ss_pred HHHHHHHHhCcCCCCCCe-EEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCCCceEEEEEEECCCCccCC
Confidence 5688888888 5556666 9999997 79998 8999754 7899999999999877666679999999 999
Q ss_pred CCCCCCChhhHHHHHHcCCCEEEEEeeCCCC
Q psy8195 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNP 101 (192)
Q Consensus 71 C~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~ 101 (192)
| +||.++|.+.++++|+|...+++.
T Consensus 80 C------~~C~~~l~~~~~~~v~~~~~~~~~ 104 (112)
T cd01283 80 C------GACRQVLAEFLPSRLYIIIDNPKG 104 (112)
T ss_pred C------HHHHHHHHHhCCCCeEEEEEcCCC
Confidence 9 599999999999999999987763
No 19
>PRK14059 hypothetical protein; Provisional
Probab=99.63 E-value=2.9e-16 Score=131.48 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=50.5
Q ss_pred cccCCceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 138 MQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 138 ~~~~rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
.+.++|||++|+|+|+||+++ .+|.++||||++++.++|+||+++||||||++
T Consensus 26 ~~~~rP~V~lk~A~SlDGkia-~~g~s~~It~~~~r~~~h~lRa~~DAIlVG~~ 78 (251)
T PRK14059 26 DGLDRPWLRANFVTSLDGAAT-VDGRSGGLGGPADRRVFGLLRALADVVVVGAG 78 (251)
T ss_pred ccCCCCeEEEEEEEcCccccc-CCCCCcCcCCHHHHHHHHHHHHHCCEEEEchh
Confidence 456899999999999999998 89999999999999999999999999999986
No 20
>KOG2771|consensus
Probab=99.16 E-value=3.7e-11 Score=102.82 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=82.6
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe--CCeEEEEeecCCC---CCccHHHHHHHHHHhc---C----------------
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK--EKRIISCGYTKSP---GGNHAEIDALLNAAAQ---G---------------- 56 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~--~g~ii~~g~n~~~---~~~HAE~~ai~~a~~~---~---------------- 56 (192)
|+++|++|..+... +++|++|++ -..|++.|..... +..|+-|++++..+++ +
T Consensus 171 ~e~~I~~a~~~~~~---~~~~a~I~~p~~~~Via~~~~~~~~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~f~~~~ 247 (344)
T KOG2771|consen 171 GELLIAMATDGHAS---RPVSAAIVDPVMDRVIAAGTGEVCAYNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLIFNAVS 247 (344)
T ss_pred HHHHHHHHhhhccc---cCccceecCCccceEEecCCCcccccCcHHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 56788888876332 459999998 4457766666543 6689999999877654 2
Q ss_pred ---------------------CCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhh---
Q psy8195 57 ---------------------YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLI--- 112 (192)
Q Consensus 57 ---------------------~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~--- 112 (192)
+.+.|.++|+|+|||. ||++|+++++|+||+|+...+..+.-+....+..
T Consensus 248 ~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~------MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~ 321 (344)
T KOG2771|consen 248 SPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCA------MCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKS 321 (344)
T ss_pred chhhhhhchhccccccccccceeeecceEEEecChHH------HHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccc
Confidence 3468999999999997 9999999999999999987554443332221111
Q ss_pred -hCCCeeeeccchHHHH
Q psy8195 113 -SAGISVKQGLMQKEAY 128 (192)
Q Consensus 113 -~~gi~v~~g~l~~e~~ 128 (192)
++.++|..+.+++++.
T Consensus 322 LNhry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 322 LNHRYEVFRGYLEEDPI 338 (344)
T ss_pred cCcceEEEEeecccccc
Confidence 2345555555544443
No 21
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.95 E-value=3.5e-09 Score=78.03 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=62.4
Q ss_pred EEEEEEe-CCeEEEEeecCC--CCCccHHHHHHHHHHhc-----------------------CCCCCCeEEEEeCCCCCC
Q psy8195 20 VGCVIVK-EKRIISCGYTKS--PGGNHAEIDALLNAAAQ-----------------------GYDVYNSTVYITLEPCSY 73 (192)
Q Consensus 20 vGaviv~-~g~ii~~g~n~~--~~~~HAE~~ai~~a~~~-----------------------~~~~~~~tlYvTlEPC~~ 73 (192)
|-|.+|+ +|+++..+.|.. +...|||+|.+.-.... +....|++|||||.||.
T Consensus 10 VvA~lv~~~G~l~daa~NtNa~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlqcCk- 88 (136)
T PF14439_consen 10 VVAALVSPDGELVDAAVNTNADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQCCK- 88 (136)
T ss_pred eeEEEECCCCcEEEeeeccCCccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEechhHH-
Confidence 6677776 999999998875 46889999999765432 12457999999999996
Q ss_pred CCCChhhHHHHHHcCC-------CEEEEEeeCCCCC
Q psy8195 74 FGYTPPCTEALIKSGI-------KKVIIAINDPNPL 102 (192)
Q Consensus 74 ~g~tp~C~~ai~~~gI-------~rvv~~~~dp~~~ 102 (192)
||+..+..+.. .+|||+..||-+.
T Consensus 89 -----MCAalv~a~~d~pg~~~~~~vvY~~ed~G~L 119 (136)
T PF14439_consen 89 -----MCAALVCAASDRPGRRVPIDVVYLNEDPGSL 119 (136)
T ss_pred -----HHHHHHHHHhhCcCCccceEEEEecCCCCcc
Confidence 99999999876 8899998887554
No 22
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.82 E-value=8.7e-08 Score=72.49 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=64.5
Q ss_pred HHHHHHHhhcccC-CCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcCCC-CCCeEEEE----eCCC
Q psy8195 2 TLALQQAKLSINS-SPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGYD-VYNSTVYI----TLEP 70 (192)
Q Consensus 2 ~~Ai~~A~~~~~~-~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~~~-~~~~tlYv----TlEP 70 (192)
+.|.+.++++... +..| |||+|+. ||+|+. |.|.. +++.|||+.||.++...+.. ++...++. ++.|
T Consensus 5 ~~a~~a~~~ay~PyS~~~-vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~~i~~i~vv~~~~~~~sP 82 (127)
T TIGR01354 5 KAAQEARKNAYAPYSNFK-VGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYRKFVAIAVADSADDPVSP 82 (127)
T ss_pred HHHHHHHHhcCCCcCCCe-EEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCCCeEEEEEEeCCCCCcCc
Confidence 4566777777443 4455 9999997 899888 99875 36889999999999887643 44444443 5899
Q ss_pred CCCCCCChhhHHHHHHcCCCEEEEEeeCC
Q psy8195 71 CSYFGYTPPCTEALIKSGIKKVIIAINDP 99 (192)
Q Consensus 71 C~~~g~tp~C~~ai~~~gI~rvv~~~~dp 99 (192)
| +||-+.|...+-+.+-+-..++
T Consensus 83 C------G~Crq~l~e~~~~~~~v~~~~~ 105 (127)
T TIGR01354 83 C------GACRQVLAEFAGPDTPIYMTNN 105 (127)
T ss_pred c------HHHHHHHHHhCCCCcEEEEECC
Confidence 9 7999999998734333333333
No 23
>PRK06848 hypothetical protein; Validated
Probab=97.92 E-value=0.00015 Score=55.77 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=55.4
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCCCCCeEEEEe---------
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT--------- 67 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~~~~tlYvT--------- 67 (192)
+.|.+..+.+...+ +.+|||++.. ||+|. .|.|-.. .+.|||..||-++...+...-.+.+-++
T Consensus 12 ~~A~~a~~~ay~ps-~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~~i~~i~~v~~~~~~~~~~ 89 (139)
T PRK06848 12 KAAEKVIEKRYRND-WHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDHEIDTIVAVRHPKPHEDDR 89 (139)
T ss_pred HHHHHHHHhccCCC-CCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCCceEEEEEEecCccccccc
Confidence 35566666664444 4559999997 89877 5887643 5789999999999766543222322222
Q ss_pred ----CCCCCCCCCChhhHHHHHHcCCC
Q psy8195 68 ----LEPCSYFGYTPPCTEALIKSGIK 90 (192)
Q Consensus 68 ----lEPC~~~g~tp~C~~ai~~~gI~ 90 (192)
+.|| ++|-+.|.+.+-.
T Consensus 90 ~~~~~~PC------G~CRQvl~E~~~~ 110 (139)
T PRK06848 90 EIWVVSPC------GACRELISDYGKN 110 (139)
T ss_pred CCCccCCC------hhhHHHHHHhCCC
Confidence 5699 6999999998633
No 24
>PRK12411 cytidine deaminase; Provisional
Probab=97.85 E-value=0.00035 Score=53.21 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=53.3
Q ss_pred HHHHHHhhcccC-CCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCCCCCeEEEEe------CCC
Q psy8195 3 LALQQAKLSINS-SPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT------LEP 70 (192)
Q Consensus 3 ~Ai~~A~~~~~~-~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~~~~tlYvT------lEP 70 (192)
.|.+.+.++... +..+ |||++.. ||+|+ .|.|-.. .+.|||..||-++...+... =.++++. +-|
T Consensus 9 ~a~~~~~~ay~pyS~~~-VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~~~-i~~i~v~~~~~~~~sP 85 (132)
T PRK12411 9 EAIEARKQAYVPYSKFQ-VGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKE-FVAIAIVADTKRPVPP 85 (132)
T ss_pred HHHHHHHhcCCCccCCc-eEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCCCc-eEEEEEEeCCCCCcCC
Confidence 455555666444 3345 9999987 89877 5777543 47899999999987665432 2333332 469
Q ss_pred CCCCCCChhhHHHHHHcC
Q psy8195 71 CSYFGYTPPCTEALIKSG 88 (192)
Q Consensus 71 C~~~g~tp~C~~ai~~~g 88 (192)
| ++|-+.|.+..
T Consensus 86 C------G~CRQ~l~Ef~ 97 (132)
T PRK12411 86 C------GACRQVMVELC 97 (132)
T ss_pred c------hhHHHHHHHhC
Confidence 9 69999999964
No 25
>PRK05578 cytidine deaminase; Validated
Probab=97.80 E-value=0.00039 Score=52.92 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=52.5
Q ss_pred HHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCCCCCeEEEE------eCCCC
Q psy8195 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYI------TLEPC 71 (192)
Q Consensus 3 ~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~~~~tlYv------TlEPC 71 (192)
.|.+..+.+.....+.+|||++.. ||+|. .|.|-.. .+.|||..||-++...|.. +=-.+.+ ...||
T Consensus 9 ~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~-~i~~i~vv~~~~~~~sPC 86 (131)
T PRK05578 9 AAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGG-RLVAIACVGETGEPLSPC 86 (131)
T ss_pred HHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCC-ceEEEEEEecCCCccCcc
Confidence 455555555433333349999987 88866 4777542 5789999999999766542 1123333 26799
Q ss_pred CCCCCChhhHHHHHHcC
Q psy8195 72 SYFGYTPPCTEALIKSG 88 (192)
Q Consensus 72 ~~~g~tp~C~~ai~~~g 88 (192)
++|-+.|.+..
T Consensus 87 ------G~CRQ~l~e~~ 97 (131)
T PRK05578 87 ------GRCRQVLAEFG 97 (131)
T ss_pred ------HHHHHHHHHhC
Confidence 69999999875
No 26
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=97.36 E-value=0.0014 Score=55.94 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=56.2
Q ss_pred HHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC--C----CCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC
Q psy8195 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS--P----GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75 (192)
Q Consensus 3 ~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~--~----~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g 75 (192)
+|.+.++.+.....+.+|||++.. ||+|. .|.|-. . .+.|||..||-++...|+. +=..+.++..||
T Consensus 28 ~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~-~i~~Iav~~~PC---- 101 (283)
T TIGR01355 28 LIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNER-GLNDLAVSYAPC---- 101 (283)
T ss_pred HHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCC-ceEEEEEEeCCc----
Confidence 344444445444455569999987 88876 477754 1 3789999999999776653 335667778999
Q ss_pred CChhhHHHHHHcC
Q psy8195 76 YTPPCTEALIKSG 88 (192)
Q Consensus 76 ~tp~C~~ai~~~g 88 (192)
++|-+.|.+..
T Consensus 102 --G~CRQ~l~Ef~ 112 (283)
T TIGR01355 102 --GHCRQFLNEIR 112 (283)
T ss_pred --chhHHHHHHhc
Confidence 69999999873
No 27
>PLN02402 cytidine deaminase
Probab=97.05 E-value=0.0046 Score=53.18 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=50.7
Q ss_pred ccCCCCCeEEEEEEe-CCeEEEEeecCCC----C--CccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHH
Q psy8195 12 INSSPNPRVGCVIVK-EKRIISCGYTKSP----G--GNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEAL 84 (192)
Q Consensus 12 ~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~--~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai 84 (192)
.....+..|||++.. ||+|. .|.|-.. . +.|||..||-++...|+.. =-.+.|+..|| ++|-+.|
T Consensus 40 yaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~~-i~~iaV~~sPC------G~CRQ~l 111 (303)
T PLN02402 40 RPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEPH-LKYVAVSAAPC------GHCRQFF 111 (303)
T ss_pred CCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCCc-eEEEEEEeCCC------cccHHHH
Confidence 333445569999987 88866 4777532 2 6899999999997766432 23477788999 6999999
Q ss_pred HHcC
Q psy8195 85 IKSG 88 (192)
Q Consensus 85 ~~~g 88 (192)
.+..
T Consensus 112 ~Ef~ 115 (303)
T PLN02402 112 QEIR 115 (303)
T ss_pred HHhc
Confidence 9873
No 28
>PRK08298 cytidine deaminase; Validated
Probab=97.04 E-value=0.007 Score=46.32 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcCCCCCCeEEEE-e--------C
Q psy8195 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGYDVYNSTVYI-T--------L 68 (192)
Q Consensus 3 ~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~~~~~~~tlYv-T--------l 68 (192)
.|.+..+.+..... +|||.|.. ||+|+ +|.|-. ..+.-||..||-++...|.......+.+ . .
T Consensus 10 ~A~~a~~~aY~PYS--~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~~~~~i~v~~~~~~~~~~~~ 86 (136)
T PRK08298 10 VAKQLIEQRYPNGW--GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKRVTHSICVARENEHSELKVL 86 (136)
T ss_pred HHHHHHHhccCCCC--ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCceEEEEEEEcCCCcCCCccc
Confidence 34444444433333 59999987 89877 588753 3578999999999876654322222222 1 4
Q ss_pred CCCCCCCCChhhHHHHHHcCCC
Q psy8195 69 EPCSYFGYTPPCTEALIKSGIK 90 (192)
Q Consensus 69 EPC~~~g~tp~C~~ai~~~gI~ 90 (192)
-|| .+|-+.|.+.+-.
T Consensus 87 sPC------G~CRQvl~Ef~~~ 102 (136)
T PRK08298 87 SPC------GVCQERLFYWGPD 102 (136)
T ss_pred CCC------hhHHHHHHHhCCC
Confidence 599 6999999998644
No 29
>KOG0833|consensus
Probab=96.93 E-value=0.017 Score=45.63 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcCCCCCCeEEEEe------CCCCCCCCCChhhHHHHH
Q psy8195 17 NPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGYDVYNSTVYIT------LEPCSYFGYTPPCTEALI 85 (192)
Q Consensus 17 ~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~~~~~~~tlYvT------lEPC~~~g~tp~C~~ai~ 85 (192)
+.+||||+.- +|+|. .|.|-. ..+.|||..||.++.-+++.--.+-..+. ..|| +-|-+-|.
T Consensus 41 ~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~~~~aV~~~~~~~f~tPC------G~CRQfl~ 113 (173)
T KOG0833|consen 41 KFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGERKFRAIAVVAYEDGDFTTPC------GVCRQFLR 113 (173)
T ss_pred CCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcccceEEEEEecCCCCcCCCc------HHHHHHHH
Confidence 3449999996 88866 477764 36899999999999877654333434444 6899 68999999
Q ss_pred HcCCCEEE
Q psy8195 86 KSGIKKVI 93 (192)
Q Consensus 86 ~~gI~rvv 93 (192)
..+-...+
T Consensus 114 Ef~~~~~l 121 (173)
T KOG0833|consen 114 EFGNASLL 121 (173)
T ss_pred HHhhccee
Confidence 98877333
No 30
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.012 Score=44.87 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=55.0
Q ss_pred HHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCC-CCCeEEEEe----CCCCCC
Q psy8195 4 ALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD-VYNSTVYIT----LEPCSY 73 (192)
Q Consensus 4 Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~-~~~~tlYvT----lEPC~~ 73 (192)
|.+.+..+.....+.+|||++.. ||+|. .|.|-.+ -+.|||..||-++-..+.. +..-.+|.. .-||
T Consensus 12 a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~v~~~~~~~~sPC-- 88 (134)
T COG0295 12 APEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISEGKRKFDAVVVVADTGKPVSPC-- 88 (134)
T ss_pred HHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHcCCCcEEEEEEEcCCCCCcCCc--
Confidence 33444444444445559999997 77755 5888643 4789999999998766432 222222222 6799
Q ss_pred CCCChhhHHHHHHcC-CCEEEEEe
Q psy8195 74 FGYTPPCTEALIKSG-IKKVIIAI 96 (192)
Q Consensus 74 ~g~tp~C~~ai~~~g-I~rvv~~~ 96 (192)
.+|-+-|.... -...+|-.
T Consensus 89 ----G~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 89 ----GACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred ----HHHHHHHHHhcCCCceEEEe
Confidence 69999999966 33344443
No 31
>PRK09027 cytidine deaminase; Provisional
Probab=96.79 E-value=0.012 Score=50.69 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=51.8
Q ss_pred ccCCCCCeEEEEEEe-CCeEEEEeecCCC------CCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHH
Q psy8195 12 INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEAL 84 (192)
Q Consensus 12 ~~~~~~p~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai 84 (192)
.....+..|||++.. +|+|. .|.|-.. .+.|||..||-++...|+. +=..+.++..|| ++|-+.|
T Consensus 65 yaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge~-~i~~I~v~~sPC------G~CRQ~l 136 (295)
T PRK09027 65 VTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGEK-AIADITVNYTPC------GHCRQFM 136 (295)
T ss_pred cCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCCC-ceEEEEEEecCc------hhhHHHH
Confidence 344445559999987 88876 5888643 4789999999998776643 335666778899 6999999
Q ss_pred HHcC
Q psy8195 85 IKSG 88 (192)
Q Consensus 85 ~~~g 88 (192)
.+..
T Consensus 137 ~E~~ 140 (295)
T PRK09027 137 NELN 140 (295)
T ss_pred HHhC
Confidence 9863
No 32
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=96.64 E-value=0.022 Score=45.82 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCCCeEEEEEEe--CCeEEEEeecCCC--CCccHHHHHHHHHHhcC----CCCCCeEEEEeCCCCCCCCCChh----hHH
Q psy8195 15 SPNPRVGCVIVK--EKRIISCGYTKSP--GGNHAEIDALLNAAAQG----YDVYNSTVYITLEPCSYFGYTPP----CTE 82 (192)
Q Consensus 15 ~~~p~vGaviv~--~g~ii~~g~n~~~--~~~HAE~~ai~~a~~~~----~~~~~~tlYvTlEPC~~~g~tp~----C~~ 82 (192)
+++-.+=|.-|+ +|.-+-.|+-... ...|||+.-|+...... ...-.-|.|+|..||. - |+.
T Consensus 21 ~r~~t~Lcy~v~~~~~~~~~~g~~~n~~~~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~------~~~~~Ca~ 94 (188)
T PF08210_consen 21 GRNKTYLCYEVEGRDGSWVQRGYFRNENCKGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCP------ESDHCCAE 94 (188)
T ss_dssp SSSS-EEEEEEEEECTTEEEECECCSTTSTSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--C------C----HHH
T ss_pred CCCeEEEEEEEEEecCCCceEEEEECCCCCCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCc------chhhHHHH
Confidence 455557777776 5545555555433 68999999999873221 1223568999999995 7 999
Q ss_pred HHHHc-------CCCEEEEEee-CCC-CCC---cchhHHhhhhCCCeeeeccchHHHHhhcccccccc--ccCCcee
Q psy8195 83 ALIKS-------GIKKVIIAIN-DPN-PLV---SGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRM--QRGIPWV 145 (192)
Q Consensus 83 ai~~~-------gI~rvv~~~~-dp~-~~~---~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~--~~~rP~v 145 (192)
.|+.. +++=.+|.+. ..- ... ...|+..|.++|++|.. .-.++-....+.|-... .+-.||.
T Consensus 95 ~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~i-M~~~df~~cw~~FV~~~~~~~f~pW~ 170 (188)
T PF08210_consen 95 KIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEI-MSYKDFEYCWDNFVHNGENRPFQPWE 170 (188)
T ss_dssp HHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE--SHHHHHHHHHCCETTT-S-S----T
T ss_pred HHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEE-cCHHHHHHHHHhcccccCCCCCCccc
Confidence 99873 3333344433 111 111 34789999999998875 22345555566665333 3445554
No 33
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=96.46 E-value=0.0073 Score=46.63 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHhcCCC-CCCeEEEEeCCCCCCCCCChhhHHHHH----HcCCCEEEEEee
Q psy8195 41 GNHAEIDALLNAAAQGYD-VYNSTVYITLEPCSYFGYTPPCTEALI----KSGIKKVIIAIN 97 (192)
Q Consensus 41 ~~HAE~~ai~~a~~~~~~-~~~~tlYvTlEPC~~~g~tp~C~~ai~----~~gI~rvv~~~~ 97 (192)
..|||+.+|.+|.++|.. -+..||||.-.+|. .|-..|- .+|++++.+-..
T Consensus 80 ~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~------~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCG------YCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred HHHHHHHHHHHHHHhcCccCCeEEEEECcccch------HHHHHHHHHHHHcCCCeEEEEec
Confidence 469999999999988766 78999999988895 8976654 589999877654
No 34
>PLN02182 cytidine deaminase
Probab=96.31 E-value=0.053 Score=47.38 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=49.7
Q ss_pred ccCCCCCeEEEEEEe-CCeEEEEeecCCC------CCccHHHHHHHHHHhcCCC-CCCeEEEEe------CCCCCCCCCC
Q psy8195 12 INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYD-VYNSTVYIT------LEPCSYFGYT 77 (192)
Q Consensus 12 ~~~~~~p~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~a~~~~~~-~~~~tlYvT------lEPC~~~g~t 77 (192)
...-.+..|||++.. +|+|. .|.|-.. .+.|||..||-++..+|+. ++.-.+.+. .-||
T Consensus 60 yaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~~i~~iaVaV~~~~~~~~sPC------ 132 (339)
T PLN02182 60 RAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEKDLCELAVAISTDGKEFGTPC------ 132 (339)
T ss_pred cCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCCceEEEEEEEecCCCCCcCCC------
Confidence 333445559999987 88866 4777643 2789999999999877653 222223332 6799
Q ss_pred hhhHHHHHHcCC
Q psy8195 78 PPCTEALIKSGI 89 (192)
Q Consensus 78 p~C~~ai~~~gI 89 (192)
++|-+.|.+..-
T Consensus 133 G~CRQfm~Ef~~ 144 (339)
T PLN02182 133 GHCLQFLMEMSN 144 (339)
T ss_pred chhHHHHHHhCC
Confidence 699999999753
No 35
>PRK09027 cytidine deaminase; Provisional
Probab=95.87 E-value=0.062 Score=46.26 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=60.5
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcCCC---CCCeEEEEe----CC
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGYD---VYNSTVYIT----LE 69 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~~~---~~~~tlYvT----lE 69 (192)
+.|++.+.++.....+-+||+.|.. ||+|. .|.|-. .++..||..||-.+-..|.. .+...|+.. .-
T Consensus 194 ~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~~i~lv~~~~~~is 272 (295)
T PRK09027 194 QAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQRAVLVEKADAKLS 272 (295)
T ss_pred HHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEEEEEEEeCCCCCcC
Confidence 5678888888555445559999987 88877 477753 47999999999998766653 455555543 35
Q ss_pred CCCCCCCChhhHHHHHHcCCCEE
Q psy8195 70 PCSYFGYTPPCTEALIKSGIKKV 92 (192)
Q Consensus 70 PC~~~g~tp~C~~ai~~~gI~rv 92 (192)
|| .+|-..|...+-..+
T Consensus 273 pc------g~cRq~L~ef~~~~~ 289 (295)
T PRK09027 273 QW------DATQATLKALGCHEL 289 (295)
T ss_pred ch------HHHHHHHHHhCCCCc
Confidence 88 599999887654433
No 36
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=93.22 E-value=0.69 Score=39.62 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCC---eEEEE----e
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYN---STVYI----T 67 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~---~tlYv----T 67 (192)
+.|++.++++.....+-+|||.|+. ||+|. .|.|-. +++..||..||-.+-.. +.++++ ..|-- .
T Consensus 179 ~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~~~i~~aVl~e~~~~~ 257 (283)
T TIGR01355 179 QQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGFEDIVRAVLVEKADAK 257 (283)
T ss_pred HHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCChhheeEEEEEecCCCc
Confidence 4577777777555555559999998 88877 577764 47899999999988655 334433 22221 1
Q ss_pred CCCCCCCCCChhhHHHHHHcCC
Q psy8195 68 LEPCSYFGYTPPCTEALIKSGI 89 (192)
Q Consensus 68 lEPC~~~g~tp~C~~ai~~~gI 89 (192)
.-|| .+|...|...+.
T Consensus 258 vs~~------~~~r~~l~~~~p 273 (283)
T TIGR01355 258 VSHE------ATARTLLETIAP 273 (283)
T ss_pred cChH------HHHHHHHHHhCC
Confidence 3456 477777776543
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=90.17 E-value=0.38 Score=36.10 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=30.3
Q ss_pred CccHHHHHHHHHHhc----CCCCCCeEEEE-------------eCCCCCCCCCChhhHHHHHHcCC
Q psy8195 41 GNHAEIDALLNAAAQ----GYDVYNSTVYI-------------TLEPCSYFGYTPPCTEALIKSGI 89 (192)
Q Consensus 41 ~~HAE~~ai~~a~~~----~~~~~~~tlYv-------------TlEPC~~~g~tp~C~~ai~~~gI 89 (192)
..|||+.||.++... ...++++.+|+ -..|| +.|...+.+.||
T Consensus 66 G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC------~nC~~~l~~~~v 125 (125)
T PF14431_consen 66 GRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPC------RNCAALLKHFGV 125 (125)
T ss_pred CcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCC------chHHHHHhhcCC
Confidence 469999999998765 22334444443 24688 599999998876
No 38
>PLN02402 cytidine deaminase
Probab=90.02 E-value=1.6 Score=37.68 Aligned_cols=53 Identities=21% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhc
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQ 55 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~ 55 (192)
+.|++.++++.....+-+|||.|+. ||+|. .|.|-. .++.+||..||-.+...
T Consensus 197 ~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 197 NEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred HHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 4677778888555555559999997 88876 577753 47899999999998544
No 39
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=87.68 E-value=0.41 Score=35.76 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=42.9
Q ss_pred CCCccHHHHHHHHHHhcCCC-CCCeEEEEeCCCCCCCCCChhhHHHHHHc-CCCEEEEEeeCCC
Q psy8195 39 PGGNHAEIDALLNAAAQGYD-VYNSTVYITLEPCSYFGYTPPCTEALIKS-GIKKVIIAINDPN 100 (192)
Q Consensus 39 ~~~~HAE~~ai~~a~~~~~~-~~~~tlYvTlEPC~~~g~tp~C~~ai~~~-gI~rvv~~~~dp~ 100 (192)
.+..|+|..++.++.+.+.. -+=..||+-+|||.. .+.|...|-.. -=-+|.|....+.
T Consensus 43 ~~~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~---~~~C~~~l~~~~p~a~vt~s~~yg~ 103 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAHGVPPEQITELYTELEPCEL---GGYCARMLRNSLPGAEVTYSFDYGT 103 (118)
T ss_pred CCCCChHHHHHHHHHHcCCcHHHHHHHHHhcccccc---cchHHHHHHhhCCCCeEEEeccCCC
Confidence 57899999999998765433 245679999999973 34599999986 2334777765443
No 40
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=85.75 E-value=5.8 Score=29.85 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHHhhc-ccCCCCCeEEEEEEe-CCeEEEEeecC----CCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCC
Q psy8195 2 TLALQQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTK----SPGGNHAEIDALLNAAAQGYDVYNSTVYITLEP 70 (192)
Q Consensus 2 ~~Ai~~A~~~-~~~~~~p~vGaviv~-~g~ii~~g~n~----~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEP 70 (192)
+.|++.|+++ .--...| +|++|+. +|+|.. |.+- .+++..+...||..+-..|.++...+--|-.|.
T Consensus 38 ~~A~~Aa~~syaPYS~~~-sGvAL~~~~G~i~~-G~y~EnAAfNPSl~PlQ~AL~~~~~~G~~~~~I~~avLvE~ 110 (124)
T PF08211_consen 38 QAALEAANRSYAPYSKCP-SGVALLTSDGRIYT-GRYAENAAFNPSLPPLQAALVQAVLAGKDFEDIVRAVLVEK 110 (124)
T ss_dssp HHHHHHHCT-B-TTT----EEEEEEETTS-EEE-EE-B--TTSTT-B-HHHHHHHHHHHTT--GGGEEEEEEEEE
T ss_pred HHHHHHHHhccCCccCCc-eeEEEEeCCCCEEE-EEEEeecccCCChHHHHHHHHHHHHcCCChhhEeEEEEEEc
Confidence 4688888888 3445556 9999996 888875 5443 358999999999988766665554444343443
No 41
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=76.90 E-value=5.2 Score=30.36 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=32.4
Q ss_pred CccHHHHHHHHHHhcC---CCC--CCeEEEEeCCCCCCCCCChhhHHHHHHcC
Q psy8195 41 GNHAEIDALLNAAAQG---YDV--YNSTVYITLEPCSYFGYTPPCTEALIKSG 88 (192)
Q Consensus 41 ~~HAE~~ai~~a~~~~---~~~--~~~tlYvTlEPC~~~g~tp~C~~ai~~~g 88 (192)
...+|...|++.+++. ... -.-+||+.+.|| +.|...|.+..
T Consensus 73 ~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC------~SC~~vi~qF~ 119 (133)
T PF14424_consen 73 NNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPC------ESCSNVIEQFK 119 (133)
T ss_pred cccHHHHHHHHHHHHhccccccCCceEEEEecCCcC------hhHHHHHHHHH
Confidence 4579999999988762 222 357899999999 59999887743
No 42
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=71.35 E-value=11 Score=28.76 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=49.1
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhh
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPC 80 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C 80 (192)
|+.++++=.+. + .-|||+++|+|-.. +.+ ....=...+++. ...++|+.++-..= || --
T Consensus 1 m~~~~~~L~e~-----~--~S~Vv~~~~~i~t~--~~r--Gv~pL~~ll~~~---~~~l~ga~vaDKvv-----GK--AA 59 (134)
T PF08973_consen 1 MEEAIKLLHEE-----N--YSCVVLKDGEIRTS--DGR--GVKPLYDLLNEE---PEFLKGAVVADKVV-----GK--AA 59 (134)
T ss_dssp --HHHHHHHHT-----T---SEEEESSSEEEEE----S--TTHHHHHHHHH----S---TT-EEEEEEE------H--HH
T ss_pred CHHHHHHHHhC-----C--ceEEEEeCCEEEEe--CCC--ChHHHHHHHHhC---hhhhhcccHHHHHH-----hH--HH
Confidence 55555554432 2 46899999994422 221 112222335444 56689999987653 33 36
Q ss_pred HHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 81 TEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 81 ~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
+.+++..||++|+-..- +-.+.++|+++||+|..
T Consensus 60 A~lmv~ggv~~vyA~vi------S~~Al~~L~~~gI~v~y 93 (134)
T PF08973_consen 60 AALMVLGGVKEVYADVI------SEPALDLLEEAGIKVSY 93 (134)
T ss_dssp HHHHHHH--SEEEEEEE------EHHHHHHHHHTT--EEE
T ss_pred HHHHHHhcHHHHHHHHH------hHHHHHHHHHcCCceeH
Confidence 77888899999876543 22478999999998765
No 43
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=63.39 E-value=76 Score=26.03 Aligned_cols=109 Identities=18% Similarity=0.143 Sum_probs=59.4
Q ss_pred ChhhHHHHHHcCCCEEEEEeeCCCC-CCcc--hhHHhhhhCCCeeee-ccchHHHHhhccccccccccCCceeeeeeccc
Q psy8195 77 TPPCTEALIKSGIKKVIIAINDPNP-LVSG--KGVAQLISAGISVKQ-GLMQKEAYEINIGFFSRMQRGIPWVRMKIASS 152 (192)
Q Consensus 77 tp~C~~ai~~~gI~rvv~~~~dp~~-~~~g--~g~~~l~~~gi~v~~-g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~S 152 (192)
.|.-..+|.++|++-|-.+--.... +..| ..++.|+++||.... |.-.+++... .....++...-.+-+...
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p----~i~~~~g~kia~l~~t~~ 139 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRP----AIIEVNGVKIAFLGYTDG 139 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCe----EEEEECCEEEEEEEEEcC
Confidence 4566799999999966666221111 1111 346778899998776 3334444332 222223343333333333
Q ss_pred CCCccccCCCCc-cccC-------------CHHHHHHHHHHHhhcCeEEEc
Q psy8195 153 LDNKTSLYNNSS-QWIT-------------SKESRNDSHIWRARSCAILTG 189 (192)
Q Consensus 153 lDG~ia~~~g~s-~~it-------------~~~sr~~~h~lR~~~daIlvG 189 (192)
.++......... .|-. =+...+.+.++|..+|.|+|-
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~ 190 (250)
T PF09587_consen 140 ENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVS 190 (250)
T ss_pred CCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEE
Confidence 433332221110 0000 066789999999999999984
No 44
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=57.90 E-value=76 Score=29.61 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHH
Q psy8195 5 LQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEA 83 (192)
Q Consensus 5 i~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~a 83 (192)
+..|++. .....|. + |+|+||.+|+.|.-+.. ..++--.|++++.+.+.+++|+++-.-. +-.-+-+...
T Consensus 401 l~faw~v~K~vkSNa-I--Vvvkd~~~vgIgaGQ~s-Rvd~t~~Ai~rag~~~~~~~gav~aSDa-----fFPf~Dtie~ 471 (513)
T PRK00881 401 LLFAWKVVKHVKSNA-I--VYAKDGQTVGIGAGQMS-RVDSARIAIEKAGDAGLDLKGAVLASDA-----FFPFRDGVEA 471 (513)
T ss_pred HHHHHHHHHhcCCCc-E--EEEeCCeEEEECCCCcc-hHHHHHHHHHHHHHhccCcCCeEEEeeC-----CCCchhHHHH
Confidence 4445555 3456666 5 88899999998876543 2355566888886555566787764211 1111567778
Q ss_pred HHHcCCCEEEE
Q psy8195 84 LIKSGIKKVII 94 (192)
Q Consensus 84 i~~~gI~rvv~ 94 (192)
+..+||+-|+.
T Consensus 472 aa~~Gv~aIiq 482 (513)
T PRK00881 472 AAKAGITAIIQ 482 (513)
T ss_pred HHHcCCeEEEe
Confidence 88888877665
No 45
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=57.10 E-value=1e+02 Score=24.93 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=59.0
Q ss_pred ChhhHHHHHHcCCCEEEEEe-eCCCCCCcc--hhHHhhhhCCCeeee-ccchHHHHhhccccccccccCCceeeeeeccc
Q psy8195 77 TPPCTEALIKSGIKKVIIAI-NDPNPLVSG--KGVAQLISAGISVKQ-GLMQKEAYEINIGFFSRMQRGIPWVRMKIASS 152 (192)
Q Consensus 77 tp~C~~ai~~~gI~rvv~~~-~dp~~~~~g--~g~~~l~~~gi~v~~-g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~S 152 (192)
.|.-..+|.+.|+.-+-.|- -.-|.+..| ..++.|+++|+.... +.-.+++. ++.....++...-.+=+...
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~----~~~i~~~~g~kVg~ig~t~~ 141 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEAR----RPAILEVNGIKVAFLAYTYG 141 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhc----CcEEEEECCEEEEEEEEECC
Confidence 46788999999999887772 222222222 234567888988765 22222221 22222333444333333333
Q ss_pred CCCccccCCCCc---cccCCHHHHHHHHHHHhhcCeEEEc
Q psy8195 153 LDNKTSLYNNSS---QWITSKESRNDSHIWRARSCAILTG 189 (192)
Q Consensus 153 lDG~ia~~~g~s---~~it~~~sr~~~h~lR~~~daIlvG 189 (192)
..+......... ....=+..++.+.++|.++|.|+|-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~~D~vIv~ 181 (239)
T cd07381 142 TNGIPLAAGARPGGVNPLDLERIAADIAEAKKKADIVIVS 181 (239)
T ss_pred CCCCcCcccCCccccCccCHHHHHHHHHHHhhcCCEEEEE
Confidence 333332222111 1112255789999999999999984
No 46
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=46.93 E-value=36 Score=25.88 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=34.8
Q ss_pred CccHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCChhhHHHHHH---cCCCEEEEEe
Q psy8195 41 GNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCTEALIK---SGIKKVIIAI 96 (192)
Q Consensus 41 ~~HAE~~ai~~a~~~~~~~~~~tlYvT-lEPC~~~g~tp~C~~ai~~---~gI~rvv~~~ 96 (192)
..|.|..+-....+ ...+..+||++ -.||.-. --|..++-. .|-+=-|+..
T Consensus 68 ~~HVE~k~Aa~Mr~--~g~~~a~vvIN~n~pC~~~---~gC~~~l~~iLP~GstLtV~~~ 122 (135)
T PF14428_consen 68 ASHVEGKAAAWMRR--NGIKHATVVINPNGPCGGR---DGCDQLLPAILPEGSTLTVHWP 122 (135)
T ss_pred hhhhhHHHHHHHHH--cCCeEEEEEEeCCCCCCCc---cCHHHHHHHhCCCCCEEEEEee
Confidence 56999998766643 45789999999 9999621 128776543 4555455554
No 47
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=42.36 E-value=68 Score=26.37 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=24.1
Q ss_pred EEEEEEeCCeEEEEeecCC---------CCCccHHHHHHHHH
Q psy8195 20 VGCVIVKEKRIISCGYTKS---------PGGNHAEIDALLNA 52 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~~---------~~~~HAE~~ai~~a 52 (192)
=||||+++|+|++.|..-. .|+.|.-...|.+.
T Consensus 126 DGAvII~~~rI~aA~~~Lpls~~~~~~~lGtRHRAA~Gise~ 167 (211)
T TIGR00159 126 DGAVIIRDNKIVAAGSYLPLSEQSISKSLGTRHRAALGISEK 167 (211)
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCCCccChHHHHHHHHHHh
Confidence 5999999999998886532 37888755555543
No 48
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=41.48 E-value=1.9e+02 Score=23.45 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=56.5
Q ss_pred hhhHHHHHHcCCCEEEEEee-CCCCCCcc--hhHHhhhhCCCeeeec-cchHHHHhhccccccccccCCceeeeeecccC
Q psy8195 78 PPCTEALIKSGIKKVIIAIN-DPNPLVSG--KGVAQLISAGISVKQG-LMQKEAYEINIGFFSRMQRGIPWVRMKIASSL 153 (192)
Q Consensus 78 p~C~~ai~~~gI~rvv~~~~-dp~~~~~g--~g~~~l~~~gi~v~~g-~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~Sl 153 (192)
|.-..+|.+.|+.-+..|-- +-|.+..| ..++.|+++++..... .-.+++ .++.....++...-.+=+....
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~~~----~~~~i~~~~g~kIg~ig~t~~~ 138 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLAEA----RKPAIVEVKGIKIALLAYTYGT 138 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChHHh----hCcEEEEECCEEEEEEEEEcCC
Confidence 45688999999997777732 11222221 2345577788887652 222222 1232233334443333333322
Q ss_pred CCccccCCCCcc--ccC---CHHHHHHHHHHHhhcCeEEEc
Q psy8195 154 DNKTSLYNNSSQ--WIT---SKESRNDSHIWRARSCAILTG 189 (192)
Q Consensus 154 DG~ia~~~g~s~--~it---~~~sr~~~h~lR~~~daIlvG 189 (192)
...+........ ++. -+..++.+.++|..+|.|++-
T Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~~D~vIv~ 179 (239)
T smart00854 139 NNGWAASKDRPGVALLPDLDREKILADIARARKKADVVIVS 179 (239)
T ss_pred CCCcccCCCCCCeeecCcCCHHHHHHHHHHHhccCCEEEEE
Confidence 222222222221 222 245688899999999999874
No 49
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=39.73 E-value=53 Score=17.87 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=13.1
Q ss_pred EEEEEEeCCeEEEEeecCC
Q psy8195 20 VGCVIVKEKRIISCGYTKS 38 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~~ 38 (192)
..++|.+||+|.+-|.|..
T Consensus 10 ht~al~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 10 HTCALTSDGEVYCWGDNNY 28 (30)
T ss_dssp EEEEEE-TTEEEEEE--TT
T ss_pred EEEEEEcCCCEEEEcCCcC
Confidence 5677778999999998853
No 50
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=39.30 E-value=74 Score=23.92 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcC
Q psy8195 39 PGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSG 88 (192)
Q Consensus 39 ~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~g 88 (192)
.+..|||+..+....+. .....-.+=+|--|| .+|...|...+
T Consensus 65 ~~~vHaE~~ll~~~~~~-~~~~~~yIG~SK~~C------~lC~~~~~~~~ 107 (142)
T PF14441_consen 65 KPSVHAEMQLLDHLERH-FDPPPRYIGCSKPSC------FLCYLYFQAHG 107 (142)
T ss_pred CCCeehHHHHHHHHHHh-cCCCCCEEEEeCchH------HhHHHHHHHhC
Confidence 46789999999987654 223344455677788 59999999988
No 51
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=38.76 E-value=1e+02 Score=23.21 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=19.5
Q ss_pred EEEEEEeCCeEE-EEeecCCCCCccHHHHHHHHHHh
Q psy8195 20 VGCVIVKEKRII-SCGYTKSPGGNHAEIDALLNAAA 54 (192)
Q Consensus 20 vGaviv~~g~ii-~~g~n~~~~~~HAE~~ai~~a~~ 54 (192)
+|+|+..++... ..+.-......+||+.|+..+.+
T Consensus 21 ~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~ 56 (150)
T PRK00203 21 WGAILRYKGHEKELSGGEALTTNNRMELMAAIEALE 56 (150)
T ss_pred EEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 566766644432 22211111235899999998854
No 52
>PRK13907 rnhA ribonuclease H; Provisional
Probab=38.55 E-value=1.5e+02 Score=21.37 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=21.6
Q ss_pred EEEEEEe-CCeEEEEeecCCCCCccHHHHHHHHHHh
Q psy8195 20 VGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAA 54 (192)
Q Consensus 20 vGaviv~-~g~ii~~g~n~~~~~~HAE~~ai~~a~~ 54 (192)
.|.||.+ ++.+...+.-....-.+||..|+..+.+
T Consensus 19 ~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~ 54 (128)
T PRK13907 19 AGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALK 54 (128)
T ss_pred EEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHH
Confidence 6778766 4554443332223346899999987754
No 53
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=34.77 E-value=1.6e+02 Score=27.52 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=63.9
Q ss_pred HHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCChhhH
Q psy8195 4 ALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCT 81 (192)
Q Consensus 4 Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvT-lEPC~~~g~tp~C~ 81 (192)
.+..|++. .....|- -|+++||+.|+.|.-+.. ..++-..|+.+|.+.+..++|+.|=.- .-|= +-|.
T Consensus 398 dL~FAwkv~k~vKSNA---Iv~akd~~tvGiGaGQ~s-RV~s~riA~~kA~~~~~~~~G~vlASDAFFPF------~D~v 467 (511)
T TIGR00355 398 DLLFAWKVAKHVKSNA---IVYAKNNMTVGVGAGQMS-RVGSAKIAGIKADDEGLEAKGSSLASDAFFPF------RDGV 467 (511)
T ss_pred HHHHHHHHHhhccCce---EEEEeCCeEEEecCCCcc-HHHHHHHHHHHHHhhCCCccCcEEEeccccCC------CccH
Confidence 34556665 3333343 356689999999987764 346666789988655667788877542 4566 4788
Q ss_pred HHHHHcCCCEEEEEeeCCCCCCcc-hhHHhhhhCCCeee
Q psy8195 82 EALIKSGIKKVIIAINDPNPLVSG-KGVAQLISAGISVK 119 (192)
Q Consensus 82 ~ai~~~gI~rvv~~~~dp~~~~~g-~g~~~l~~~gi~v~ 119 (192)
.....+||+-|+= |-..... ..++.-.++||...
T Consensus 468 e~aa~aGi~aIiQ----PGGSiRD~evI~aa~e~giaMv 502 (511)
T TIGR00355 468 EEAAAAGITCIIQ----PGGSMRDEDSIWAADEHGIVMV 502 (511)
T ss_pred HHHHHcCCEEEEc----CCCCCCcHHHHHHHHHhCCEEE
Confidence 8888899887763 2211111 24455556666543
No 54
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=34.60 E-value=1.1e+02 Score=22.80 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=29.2
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeec
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g 121 (192)
|+..+=+..|+..|+.-|+.+..-| ..+..|+++||+|..+
T Consensus 52 g~G~~~a~~l~~~gvdvvi~~~iG~------~a~~~l~~~GIkv~~~ 92 (121)
T COG1433 52 GAGIRIAELLVDEGVDVVIASNIGP------NAYNALKAAGIKVYVA 92 (121)
T ss_pred cchHHHHHHHHHcCCCEEEECccCH------HHHHHHHHcCcEEEec
Confidence 4445678888888888777664433 2678899999988764
No 55
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=34.29 E-value=1.6e+02 Score=26.28 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=23.6
Q ss_pred CCCCeEEEEEEeCC-----eEEEEeecCCC-------------CCccHHHHHHHHHH
Q psy8195 15 SPNPRVGCVIVKEK-----RIISCGYTKSP-------------GGNHAEIDALLNAA 53 (192)
Q Consensus 15 ~~~p~vGaviv~~g-----~ii~~g~n~~~-------------~~~HAE~~ai~~a~ 53 (192)
.+.....++|..++ +||+.|.-... ...|||+.|.|-.-
T Consensus 26 ~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~f~ 82 (374)
T smart00552 26 REWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRGFL 82 (374)
T ss_pred CCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHHHH
Confidence 34444566665422 47776644321 25799999998654
No 56
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=33.79 E-value=1.5e+02 Score=19.96 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=24.0
Q ss_pred eEEEEEEe-CCeEEEEeecC--CCCCccHHHHHHHHHHhc
Q psy8195 19 RVGCVIVK-EKRIISCGYTK--SPGGNHAEIDALLNAAAQ 55 (192)
Q Consensus 19 ~vGaviv~-~g~ii~~g~n~--~~~~~HAE~~ai~~a~~~ 55 (192)
.+|+|+.+ ++......... .....++|..|+..+.+.
T Consensus 16 g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~ 55 (130)
T cd06222 16 GAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALEL 55 (130)
T ss_pred EEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHH
Confidence 38888887 45544433332 345679999999887543
No 57
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=33.67 E-value=63 Score=26.64 Aligned_cols=91 Identities=23% Similarity=0.279 Sum_probs=55.4
Q ss_pred CCCeEEEEe--CCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeec----cchHHHHhhcc
Q psy8195 59 VYNSTVYIT--LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG----LMQKEAYEINI 132 (192)
Q Consensus 59 ~~~~tlYvT--lEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g----~l~~e~~~l~~ 132 (192)
+.++.|+++ +=|=. |.-=...+..+|++-|++...+|+++..-.-.+.+++.|+++..+ .|++.....+.
T Consensus 49 i~~~Dl~I~y~lHPDl----~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~ 124 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDL----TYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQID 124 (217)
T ss_pred CCCCCEEEEeccCchh----HHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHH
Confidence 677777775 55543 000111222389999999998888433322335677889888763 34444445566
Q ss_pred ccccccccCCceeeeeecccCCCccc
Q psy8195 133 GFFSRMQRGIPWVRMKIASSLDNKTS 158 (192)
Q Consensus 133 ~f~~~~~~~rP~v~~K~A~SlDG~ia 158 (192)
.|... -++|-+-+++- ||+|.
T Consensus 125 ~F~~~--fGkP~~ei~v~---~~~I~ 145 (217)
T PF02593_consen 125 EFAEY--FGKPKVEIEVE---NGKIK 145 (217)
T ss_pred HHHHH--hCCceEEEEec---CCcEE
Confidence 67666 57897666554 77774
No 58
>PF08652 RAI1: RAI1 like PD-(D/E)XK nuclease; InterPro: IPR013961 RAI1 is homologous to Caenorhabditis elegans DOM-3 and human DOM3Z and binds to a nuclear exoribonuclease []. It is required for 5.8S rRNA processing []. ; PDB: 3FQD_B 3FQG_A 3FQI_A 3FQJ_A.
Probab=33.21 E-value=35 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=11.6
Q ss_pred HHcCCCEEEEEeeCCCC
Q psy8195 85 IKSGIKKVIIAINDPNP 101 (192)
Q Consensus 85 ~~~gI~rvv~~~~dp~~ 101 (192)
..+||.+||+|..|++.
T Consensus 48 fL~Gi~~IvvG~Rd~~~ 64 (69)
T PF08652_consen 48 FLVGIPRIVVGFRDDDG 64 (69)
T ss_dssp HCTT--EEEEEEE-TTS
T ss_pred hccCCCEEEEEEeCCCC
Confidence 34899999999999874
No 59
>PRK08309 short chain dehydrogenase; Provisional
Probab=33.15 E-value=45 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.0
Q ss_pred CccccCCCCccccCCHH-HHHHHHHHHhhcCeEEEcc
Q psy8195 155 NKTSLYNNSSQWITSKE-SRNDSHIWRARSCAILTGK 190 (192)
Q Consensus 155 G~ia~~~g~s~~it~~~-sr~~~h~lR~~~daIlvG~ 190 (192)
|++. ..+.++|+|.++ |..-..-++...+--+||.
T Consensus 138 gf~~-~~~~~rwlt~~ei~~gv~~~~~~~~~~~~~g~ 173 (177)
T PRK08309 138 GFVL-EDTYSRWLTHEEISDGVIKAIESDADEHVVGT 173 (177)
T ss_pred eEEE-eCCccccCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 5554 467899999999 8888899999999888884
No 60
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=33.01 E-value=29 Score=29.18 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 168 TSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 168 t~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
||-.+...+++++..+||+|||..
T Consensus 209 SGI~t~~d~~~l~~~~davLvG~~ 232 (247)
T PRK13957 209 SGIESRSDLDKFRKLVDAALIGTY 232 (247)
T ss_pred CCCCCHHHHHHHHHhCCEEEECHH
Confidence 566677777778777999999964
No 61
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=32.32 E-value=43 Score=23.97 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCeEEEEEEe-CCeEEEEeecCC--------C-----CCccHHHHHHHHHHhc
Q psy8195 16 PNPRVGCVIVK-EKRIISCGYTKS--------P-----GGNHAEIDALLNAAAQ 55 (192)
Q Consensus 16 ~~p~vGaviv~-~g~ii~~g~n~~--------~-----~~~HAE~~ai~~a~~~ 55 (192)
|.+.+|+||++ +|+|+..-.+.. + ..--.|..|+|++.+.
T Consensus 1 ~~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EE 54 (125)
T cd04679 1 PRVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEE 54 (125)
T ss_pred CceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHH
Confidence 45679999998 689887654321 0 1223667778877654
No 62
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.80 E-value=47 Score=27.63 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=31.0
Q ss_pred hhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 79 ~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
-...++...|++||.+..++++. +...-.+.|+++||+|..
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~-v~~~~~~~l~~~G~eV~~ 150 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPE-TSRPMAQYFAVRGFEIVN 150 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHH-HHHHHHHHHHhCCcEEee
Confidence 45677778999999999877654 333456778899999875
No 63
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=30.61 E-value=2.6e+02 Score=21.84 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=35.2
Q ss_pred CceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhh-cCeEEEc
Q psy8195 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR-SCAILTG 189 (192)
Q Consensus 142 rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~-~daIlvG 189 (192)
.|.+......-++|++...-..-..+.=++-++.+..|+.+ .++|.|.
T Consensus 106 ~~lv~~~~~~~v~gr~~~~G~~i~~ld~~~v~~~~~~l~~~gv~avAV~ 154 (176)
T PF05378_consen 106 DPLVPRERVFEVDGRIDADGEVIEPLDEDEVREALRELKDKGVEAVAVS 154 (176)
T ss_pred cccccccCEEEECCccccCcEEecCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 56666677777777776543334556667889999999998 8888774
No 64
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=27.75 E-value=4.4e+02 Score=23.52 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=50.5
Q ss_pred hhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh--CCCe-eeeccchHHHHhhccccccccccCCceeeeeecccCCC
Q psy8195 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS--AGIS-VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDN 155 (192)
Q Consensus 79 ~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~--~gi~-v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG 155 (192)
+=+.....+||+.|+|+..-+ ...-...|.+ ..+. +...+-..+..+-+..|+. ..++|+ ++..-+|-
T Consensus 76 ~eae~~a~aGi~dIl~a~p~~----~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~--~~~~pl---~v~iE~D~ 146 (368)
T COG3616 76 GEAEVFADAGIDDILLAYPLP----GRAALAALAELLADPPRISVLIDSVEQLDALAALAR--DAGKPL---RVLIEIDS 146 (368)
T ss_pred HHHHHHHccCccceEEecCCC----chhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHH--hcCCCe---eEEEEeCC
Confidence 345666778999999995322 1222333433 2233 2222223444444555554 456664 33344442
Q ss_pred ccccCCCCccccCCHHHHHHHHHHHhhcCeEEEc
Q psy8195 156 KTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189 (192)
Q Consensus 156 ~ia~~~g~s~~it~~~sr~~~h~lR~~~daIlvG 189 (192)
..+++.-.|-+.++.+...+++..-..+.|
T Consensus 147 ----G~~R~Gv~t~~~~~~La~~~~~~~~l~~~G 176 (368)
T COG3616 147 ----GLHRSGVRTPEVAEALAAEIAAAPGLRLAG 176 (368)
T ss_pred ----CCCccCcCChHHHHHHHHhhhhccceEEee
Confidence 345555556566777776666555444444
No 65
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=26.94 E-value=28 Score=17.66 Aligned_cols=10 Identities=60% Similarity=1.597 Sum_probs=6.9
Q ss_pred eCCCCCCCCCChhhH
Q psy8195 67 TLEPCSYFGYTPPCT 81 (192)
Q Consensus 67 TlEPC~~~g~tp~C~ 81 (192)
.|.||- |+|-
T Consensus 5 dlrpcy-----ppch 14 (22)
T PF08121_consen 5 DLRPCY-----PPCH 14 (22)
T ss_pred ccccCC-----CCcc
Confidence 367887 7774
No 66
>KOG0879|consensus
Probab=26.46 E-value=82 Score=24.30 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEee
Q psy8195 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN 97 (192)
Q Consensus 56 ~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~ 97 (192)
+.+..||..|.|+-||. |.-=|.||||.-
T Consensus 116 G~~tNGCQFFITcakcd-------------fLD~KHVVFGrv 144 (177)
T KOG0879|consen 116 GKDTNGCQFFITCAKCD-------------FLDGKHVVFGRV 144 (177)
T ss_pred CCCCCCceEEEEecccc-------------cccCceEEEeee
Confidence 77889999999999996 344578999864
No 67
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=24.92 E-value=2.5e+02 Score=23.60 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=36.8
Q ss_pred CeEEEEeCCCCCC---CC---CChhh--HHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh--CCCeeee
Q psy8195 61 NSTVYITLEPCSY---FG---YTPPC--TEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS--AGISVKQ 120 (192)
Q Consensus 61 ~~tlYvTlEPC~~---~g---~tp~C--~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~--~gi~v~~ 120 (192)
+--+|+-..|-.. |. -.-|+ ...+...|..=||||..+++..+.-.-.+.|.+ .+.+++.
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTF 120 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTF 120 (248)
T ss_pred CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEE
Confidence 3457888888631 11 11244 345667899999999999987655444444433 2555554
No 68
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.89 E-value=2.6e+02 Score=20.04 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=34.7
Q ss_pred hhHHHHHHcC-CCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 79 PCTEALIKSG-IKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 79 ~C~~ai~~~g-I~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
--...+.... +.-|++|.-..-....-.-.+.|++.||.|+.-.-...|+..|
T Consensus 42 ~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAcrTyN 95 (109)
T cd00248 42 EALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAACRTYN 95 (109)
T ss_pred HHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 4444555555 6678888876554444455678999999988755556666644
No 69
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=24.88 E-value=20 Score=26.26 Aligned_cols=14 Identities=36% Similarity=0.925 Sum_probs=10.7
Q ss_pred CCCCCCChhhHHHH
Q psy8195 71 CSYFGYTPPCTEAL 84 (192)
Q Consensus 71 C~~~g~tp~C~~ai 84 (192)
|..+|||||--+.|
T Consensus 80 ClFFGkTpmsddki 93 (126)
T COG2164 80 CLFFGKTPMSDDKI 93 (126)
T ss_pred EEEecCCcCccccc
Confidence 88899999865444
No 70
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=24.58 E-value=69 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=22.8
Q ss_pred EEEEEEeCCeEEEEeecC----------CCCCccHHHHHHHHH
Q psy8195 20 VGCVIVKEKRIISCGYTK----------SPGGNHAEIDALLNA 52 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~----------~~~~~HAE~~ai~~a 52 (192)
=||||+++++|++.|.=- ..|+.|--..+|.+-
T Consensus 173 DGAvII~~~kIvaAg~yLpls~~~~i~k~lGtRHrAAlgiSe~ 215 (247)
T COG1624 173 DGAVIIRDNKIVAAGRYLPLSEKSLISKGLGTRHRAALGISEV 215 (247)
T ss_pred cceEEEeCCEEEEEEEEeccCCCCCcCccccHHHHHhhccccc
Confidence 499999988999877432 237888755555443
No 71
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=24.24 E-value=1.8e+02 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=35.7
Q ss_pred cCCceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhhcCeEEEcc
Q psy8195 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGK 190 (192)
Q Consensus 140 ~~rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~~daIlvG~ 190 (192)
...+.+..=.-.++||+|-.+.. +=++++++.+.|+.+.--+++|.
T Consensus 63 ~~~~VigaDtvv~ldgrilgKP~-----~~~eA~~~L~~lSG~~h~v~T~v 108 (193)
T COG0424 63 PDALVIGADTVVVLDGRILGKPK-----DEEEAREMLRKLSGRTHQVYTGV 108 (193)
T ss_pred CCCEEEecCeEEEECCEEecCCC-----CHHHHHHHHHHhcCCeEEEEEEE
Confidence 45667777777889999976654 45889999999998887777763
No 72
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=24.20 E-value=1.5e+02 Score=25.78 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=43.7
Q ss_pred eeeccchHHHHhhccccccccccCCce-eeeeecccCCC---ccccCC-CCccccCCHHHHHHHHHHHhhcCe
Q psy8195 118 VKQGLMQKEAYEINIGFFSRMQRGIPW-VRMKIASSLDN---KTSLYN-NSSQWITSKESRNDSHIWRARSCA 185 (192)
Q Consensus 118 v~~g~l~~e~~~l~~~f~~~~~~~rP~-v~~K~A~SlDG---~ia~~~-g~s~~it~~~sr~~~h~lR~~~da 185 (192)
|..|.-+..-.++-+.+..+.+...|+ +..++-.++|| |+.... +..-||+.......-=..|+.+|.
T Consensus 172 vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~kA~t~~ 244 (329)
T PRK08560 172 AVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKKAYCPP 244 (329)
T ss_pred EEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHhccCCC
Confidence 334555555445555554444444564 55677789998 677666 667799888877666667777774
No 73
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=24.09 E-value=2.6e+02 Score=20.45 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=38.6
Q ss_pred hhhHHHHHHcCCCEEEEEeeCCCC-CCcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 78 PPCTEALIKSGIKKVIIAINDPNP-LVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 78 p~C~~ai~~~gI~rvv~~~~dp~~-~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
+.-...++..++.-|++|.-..-. ...-.-.+.|++.||+|..-.-...|+..|
T Consensus 48 ~~~l~~ll~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aAcrTYN 102 (117)
T cd05126 48 PEELEELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEAVKRYN 102 (117)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHHHHHHH
Confidence 677888888888889999865533 234445678999999998744556666654
No 74
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=24.02 E-value=49 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.1
Q ss_pred EEEEEEeCCeEEEEeecC
Q psy8195 20 VGCVIVKEKRIISCGYTK 37 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~ 37 (192)
=||||+++|+|++.|.+-
T Consensus 56 DGAviI~~~~i~aag~~l 73 (122)
T PF02457_consen 56 DGAVIIDGGRIVAAGAIL 73 (122)
T ss_dssp SSEEEEETTCCEEEEEEE
T ss_pred CceEEEECCeEEEEEEEe
Confidence 499999999999888663
No 75
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=23.97 E-value=1.6e+02 Score=21.14 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=32.8
Q ss_pred hhHHHHHHc--CCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 79 PCTEALIKS--GIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 79 ~C~~ai~~~--gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
--...+... .+.-|++|.-.......-.-.+.|++.||.|+.-.-...|+..|
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~tyN 96 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACRTYN 96 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHHHHH
T ss_pred HHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 444555555 67789999876543344456678999999988744456666544
No 76
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.50 E-value=87 Score=21.07 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=30.3
Q ss_pred CCCCC-CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeec
Q psy8195 70 PCSYF-GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121 (192)
Q Consensus 70 PC~~~-g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g 121 (192)
+|.+. +....-+..|...++.-|+.+.- .......|++.||+|...
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~v~~li~~~i------G~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 34 ACNEGGGGGDKIAKFLAEEGVDVLICGGI------GEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp ECCCSSCHSTHHHHHHHHTTESEEEESCS------CHHHHHHHHHTTSEEEES
T ss_pred ccccccccchhHHHHHHHcCCCEEEEeCC------CHHHHHHHHHCCCEEEEc
Confidence 45443 33344567777789988877742 223567899999998874
No 77
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.81 E-value=2.1e+02 Score=19.46 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=26.7
Q ss_pred hhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeecc
Q psy8195 78 PPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGL 122 (192)
Q Consensus 78 p~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~ 122 (192)
..-...|...++.-|+.+.-- ......|++.||++..+.
T Consensus 53 ~~~~~~l~~~~v~~vi~~~iG------~~~~~~l~~~gI~v~~~~ 91 (103)
T cd00851 53 GKAAEFLADEGVDVVIVGGIG------PRALNKLRNAGIKVYKGA 91 (103)
T ss_pred hHHHHHHHHcCCCEEEeCCCC------cCHHHHHHHCCCEEEEcC
Confidence 345666777888877776432 235778889999987643
No 78
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.65 E-value=1.1e+02 Score=23.04 Aligned_cols=55 Identities=33% Similarity=0.306 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCCCCCCCChhhHHHHHH-cCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 60 YNSTVYITLEPCSYFGYTPPCTEALIK-SGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 60 ~~~tlYvTlEPC~~~g~tp~C~~ai~~-~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
.-|.+|.+|+|-- --..+|.. +---+++++...-.+.++-+-+..|++-||+|+.
T Consensus 27 ~~~eiyinlr~tr------~v~vallens~~vK~Ig~P~s~y~k~skkvlkaleq~gI~vIP 82 (139)
T COG1710 27 DVTEIYINLRPTR------EVIVALLENSPNVKVIGCPPSLYPKVSKKVLKALEQMGIKVIP 82 (139)
T ss_pred ccceEEEeecccH------HHHHHHHhcCCCcceecCCchhhhHHHHHHHHHHHhCCceEee
Confidence 3469999999985 67778777 4444455554443344455566778888998875
No 79
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.28 E-value=2.6e+02 Score=18.90 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=27.1
Q ss_pred CChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeec
Q psy8195 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121 (192)
Q Consensus 76 ~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g 121 (192)
....-...+...++.-|+.+.--+ .....|+++||+|..+
T Consensus 49 ~~~~~~~~l~~~~v~~vi~~~iG~------~a~~~l~~~gI~v~~~ 88 (102)
T cd00562 49 EGKLAARLLALEGCDAVLVGGIGG------PAAAKLEAAGIKPIKA 88 (102)
T ss_pred cchHHHHHHHHCCCcEEEEcccCc------cHHHHHHHcCCEEEEc
Confidence 334567777778888777764332 2567788888888754
No 80
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.12 E-value=61 Score=27.31 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=24.7
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEe-CCe
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVK-EKR 29 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~-~g~ 29 (192)
|.+|++.|++. .+.++.|.-=|+|.| |++
T Consensus 1 ~~~~~~~~~~~~~~~~~~P~HVaiImDGNrR 31 (250)
T PRK14840 1 MSLALEQAQENFPSLQSLPRHVAIIMDGNRR 31 (250)
T ss_pred CcchhhhhhhhhcccCCCCCeEEEEcCCChH
Confidence 78999999999 888999988888887 544
No 81
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=22.02 E-value=4.8e+02 Score=21.87 Aligned_cols=84 Identities=14% Similarity=0.270 Sum_probs=54.4
Q ss_pred EEEEEEe-CCeEEEEeecCCCCCccHHHHHHHHHH----hcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEE
Q psy8195 20 VGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAA----AQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94 (192)
Q Consensus 20 vGaviv~-~g~ii~~g~n~~~~~~HAE~~ai~~a~----~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~ 94 (192)
-+|.|++ +|+++... .+-..|- |+.++. .++.+++++.|++|..==. -=..-.+.+||+ ++.
T Consensus 160 H~aal~~~~g~~l~~~---EDIGRHN---AvDKviG~all~g~~~~~~~l~~SGR~s~------emv~Ka~~aGip-viv 226 (263)
T PRK00724 160 HAAALLCPDGELLAVR---EDVGRHN---ALDKLIGAALRAGIPLRDGALLVSGRASS------EMVQKAAMAGIP-ILV 226 (263)
T ss_pred eEEEEEcCCCCEEEEE---ecCchhH---HHHHHHHHHHHcCCCccCcEEEEeCCchH------HHHHHHHHcCCc-EEE
Confidence 5777785 88887533 2334453 566543 3466889999998865322 223444568999 556
Q ss_pred EeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 95 AINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 95 ~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
+.+-|. ..+++.-++.||.+..
T Consensus 227 S~saPT----~lAVelA~~~giTLiG 248 (263)
T PRK00724 227 AVSAPT----SLAVELAEELGLTLVG 248 (263)
T ss_pred Ecccch----HHHHHHHHHhCCEEEE
Confidence 655554 3588888899998875
No 82
>KOG1228|consensus
Probab=21.40 E-value=56 Score=27.05 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=12.4
Q ss_pred CCeEEEEeCCCCCC
Q psy8195 60 YNSTVYITLEPCSY 73 (192)
Q Consensus 60 ~~~tlYvTlEPC~~ 73 (192)
.||.||||+.||.+
T Consensus 74 gg~WLyVTHd~~a~ 87 (256)
T KOG1228|consen 74 GGCWLYVTHDLCAK 87 (256)
T ss_pred CceEEEEecccchh
Confidence 68999999999963
No 83
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.94 E-value=2.7e+02 Score=24.31 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred cchhH---HhhhhCCCeeee-ccchHHHHhhccccccccccCCce--------eeeeecccCCCccccCCCCccccCCHH
Q psy8195 104 SGKGV---AQLISAGISVKQ-GLMQKEAYEINIGFFSRMQRGIPW--------VRMKIASSLDNKTSLYNNSSQWITSKE 171 (192)
Q Consensus 104 ~g~g~---~~l~~~gi~v~~-g~l~~e~~~l~~~f~~~~~~~rP~--------v~~K~A~SlDG~ia~~~g~s~~it~~~ 171 (192)
.|+|+ ..|...|+++.. |.+-....+++..++....-..-| +=+|+-..-||..+.-++..=.||..+
T Consensus 36 GGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~ 115 (310)
T COG1105 36 GGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAE 115 (310)
T ss_pred CCCceeHHHHHHHcCCCceEEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHH
Confidence 45665 457778887654 333333333333233222111112 344555555555555556666788888
Q ss_pred HHHHHHHHHh---hcCeEEEccC
Q psy8195 172 SRNDSHIWRA---RSCAILTGKN 191 (192)
Q Consensus 172 sr~~~h~lR~---~~daIlvG~~ 191 (192)
-+++..++.+ ..|.|+++++
T Consensus 116 ~~~~l~~~~~~l~~~d~VvlsGS 138 (310)
T COG1105 116 LEQFLEQLKALLESDDIVVLSGS 138 (310)
T ss_pred HHHHHHHHHHhcccCCEEEEeCC
Confidence 8887777666 7787777664
No 84
>PLN02891 IMP cyclohydrolase
Probab=20.61 E-value=3e+02 Score=25.98 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCChhhHH
Q psy8195 5 LQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCTE 82 (192)
Q Consensus 5 i~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvT-lEPC~~~g~tp~C~~ 82 (192)
+..|++. .....| +-|+++||+.|+.|.-+..- .++-..|+.+| +..++|+.|=.- .-|=. -|-|..
T Consensus 436 L~FAwkvvK~vKSN---AIV~akd~~tvGIGaGQ~sR-Vda~~iA~~kA---~~~~~G~vlASDAFFPF~----~~D~ve 504 (547)
T PLN02891 436 AKFAWLCVKHVKSN---AIVVAKNNRMLGMGSGQPNR-VESLRIALEKA---GEEAKGAALASDAFFPFA----WNDAVE 504 (547)
T ss_pred HHHHHHHHhhccCc---eEEEEeCCeEEEecCCCccH-HHHHHHHHHHh---ccccCCeEEEecccCCCC----CCccHH
Confidence 4455555 233333 34666899999999877643 34555688888 666777766432 23430 025777
Q ss_pred HHHHcCCCEEE
Q psy8195 83 ALIKSGIKKVI 93 (192)
Q Consensus 83 ai~~~gI~rvv 93 (192)
....+||+-|+
T Consensus 505 ~aa~~Gv~aII 515 (547)
T PLN02891 505 EACQAGVKVIA 515 (547)
T ss_pred HHHHhCCEEEE
Confidence 77777877665
Done!