Query psy8195
Match_columns 192
No_of_seqs 197 out of 1951
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:01:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hxv_A Diaminohydroxyphosphori 100.0 1.4E-62 4.7E-67 428.5 17.6 189 1-191 18-207 (360)
2 2b3z_A Riboflavin biosynthesis 100.0 2.8E-62 9.5E-67 428.3 16.2 188 1-191 18-206 (373)
3 2g6v_A Riboflavin biosynthesis 100.0 5.1E-62 1.8E-66 430.2 15.8 188 1-191 34-222 (402)
4 3dh1_A TRNA-specific adenosine 100.0 2.3E-39 7.9E-44 259.1 9.6 141 1-148 30-188 (189)
5 2nx8_A TRNA-specific adenosine 100.0 1E-38 3.5E-43 253.5 8.6 137 1-144 20-166 (179)
6 2b3j_A TRNA adenosine deaminas 100.0 3.9E-38 1.3E-42 245.9 11.0 134 1-141 11-154 (159)
7 1z3a_A TRNA-specific adenosine 100.0 1.2E-37 4.2E-42 245.0 12.1 135 1-142 13-157 (168)
8 2g84_A Cytidine and deoxycytid 100.0 1E-37 3.5E-42 251.2 10.5 131 1-138 32-183 (197)
9 1wwr_A TRNA adenosine deaminas 100.0 1.1E-36 3.9E-41 240.1 8.7 132 1-140 27-168 (171)
10 2a8n_A Cytidine and deoxycytid 100.0 3.7E-36 1.3E-40 231.1 10.5 127 1-134 8-144 (144)
11 1wkq_A Guanine deaminase; doma 100.0 3E-36 1E-40 236.2 9.0 132 1-139 15-160 (164)
12 1p6o_A Cytosine deaminase; hyd 100.0 3.5E-35 1.2E-39 229.6 9.5 127 1-138 18-151 (161)
13 1vq2_A DCMP deaminase, deoxycy 100.0 1.7E-32 5.8E-37 220.1 12.6 120 1-131 7-183 (193)
14 2w4l_A DCMP deaminse, deoxycyt 100.0 4E-33 1.4E-37 221.1 6.9 124 1-138 17-167 (178)
15 2hvw_A Deoxycytidylate deamina 100.0 2.1E-32 7.1E-37 217.9 9.8 114 1-125 46-178 (184)
16 3g8q_A Predicted RNA-binding p 99.9 1.5E-27 5.2E-32 193.5 10.4 90 12-120 16-105 (278)
17 2nyt_A Probable C->U-editing e 99.9 3.2E-24 1.1E-28 171.3 10.5 125 14-149 29-173 (190)
18 1uwz_A Cytidine deaminase; CDD 99.4 3.6E-13 1.2E-17 102.0 9.5 81 1-89 7-98 (136)
19 2p4g_A Hypothetical protein; p 99.4 1.6E-13 5.6E-18 114.6 4.2 51 140-191 31-81 (270)
20 2fr5_A Cytidine deaminase; tet 99.3 8.6E-12 3E-16 95.4 10.0 84 1-92 19-113 (146)
21 2z3g_A Blasticidin-S deaminase 99.3 1.3E-11 4.4E-16 92.7 10.2 82 1-90 11-101 (130)
22 3ky8_A Putative riboflavin bio 98.9 1.3E-10 4.6E-15 92.8 0.8 53 139-191 16-72 (197)
23 3b8f_A Putative blasticidin S 98.8 1.4E-08 4.8E-13 77.1 8.1 85 1-94 8-106 (142)
24 1r5t_A Cytidine deaminase; zin 98.7 7E-08 2.4E-12 73.3 10.1 80 2-88 16-107 (142)
25 3r2n_A Cytidine deaminase; str 98.7 1.1E-07 3.7E-12 71.9 9.0 86 2-95 15-111 (138)
26 2d30_A Cytidine deaminase; pur 98.6 1.8E-07 6.2E-12 70.9 9.8 80 2-88 17-106 (141)
27 3mpz_A Cytidine deaminase; ssg 98.2 5.1E-06 1.7E-10 63.4 8.2 86 2-94 30-125 (150)
28 1ctt_A Cytidine deaminase; hyd 98.1 8.6E-06 2.9E-10 68.7 8.9 82 2-90 193-286 (294)
29 1ctt_A Cytidine deaminase; hyd 98.0 2.1E-05 7.1E-10 66.3 9.5 75 6-88 58-140 (294)
30 3dmo_A Cytidine deaminase; str 97.8 0.0002 6.9E-09 53.8 9.6 77 3-88 17-107 (138)
31 3oj6_A Blasticidin-S deaminase 97.5 0.0012 4E-08 50.7 10.7 64 19-89 52-124 (158)
32 4eg2_A Cytidine deaminase; UMP 96.6 0.014 4.8E-07 49.0 9.7 70 12-89 68-144 (298)
33 4eg2_A Cytidine deaminase; UMP 95.8 0.043 1.5E-06 46.1 8.7 80 2-88 197-288 (298)
34 3v4k_A DNA DC->DU-editing enzy 94.1 0.19 6.5E-06 39.8 7.7 74 41-120 78-160 (203)
35 3vow_A Probable DNA DC->DU-edi 94.0 0.28 9.4E-06 38.5 8.3 75 40-120 63-147 (190)
36 3ix9_A Dihydrofolate reductase 70.6 3.6 0.00012 31.9 3.6 45 144-191 24-68 (190)
37 3kgy_A Bifunctional deaminase- 45.1 16 0.00054 29.2 3.2 17 144-160 22-38 (231)
38 4ehi_A Bifunctional purine bio 38.9 99 0.0034 27.7 7.6 79 5-93 422-502 (534)
39 3p1g_A Xenotropic murine leuke 38.5 73 0.0025 23.6 6.0 48 20-68 41-89 (165)
40 2ab1_A Hypothetical protein; H 37.8 90 0.0031 22.0 6.1 53 79-131 52-105 (122)
41 3zzm_A Bifunctional purine bio 37.1 1.8E+02 0.0061 26.0 9.0 77 4-93 413-491 (523)
42 1nm3_A Protein HI0572; hybrid, 36.9 1.3E+02 0.0046 22.7 7.5 58 20-86 127-189 (241)
43 3nrr_A Dihydrofolate reductase 35.1 40 0.0014 30.1 4.5 49 142-191 12-72 (515)
44 2gm2_A Conserved hypothetical 32.6 73 0.0025 22.9 4.9 54 78-131 54-107 (132)
45 2fb5_A Hypothetical membrane s 30.6 27 0.00092 27.4 2.3 32 20-51 135-176 (205)
46 2bdq_A Copper homeostasis prot 28.9 95 0.0032 24.6 5.3 60 61-120 54-123 (224)
47 3rg9_A Bifunctional dihydrofol 27.3 77 0.0026 25.2 4.6 47 142-190 26-84 (240)
48 2fi9_A Outer membrane protein; 27.2 1.4E+02 0.0048 21.1 5.7 54 78-131 56-111 (128)
49 1p1p_A AA-conotoxin PIVA; neur 26.9 32 0.0011 17.5 1.4 14 68-81 11-24 (26)
50 3i7u_A AP4A hydrolase; nudix p 26.7 41 0.0014 23.5 2.7 37 19-55 6-51 (134)
51 2e4l_A Ribonuclease HI, RNAse 26.2 1.2E+02 0.0041 21.9 5.2 36 20-55 24-60 (158)
52 1jl1_A Ribonuclease HI; RNAse 25.7 95 0.0032 22.3 4.6 36 20-55 22-58 (155)
53 2fvt_A Conserved hypothetical 25.2 1.5E+02 0.0052 21.2 5.6 54 78-131 55-110 (135)
54 3h08_A RNH (ribonuclease H); R 22.5 1.2E+02 0.004 21.4 4.5 37 19-55 21-58 (146)
No 1
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00 E-value=1.4e-62 Score=428.48 Aligned_cols=189 Identities=41% Similarity=0.644 Sum_probs=183.2
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++||++|+++ ..+.|||+||||||+||+||++|+|...++.|||++||+++++.+..++|||||||||||+|+|||||
T Consensus 18 m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~g~t~~ 97 (360)
T 2hxv_A 18 MKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPP 97 (360)
T ss_dssp HHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCC
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHhcCCCcCCcEEEEecCcccccCCCHH
Confidence 89999999999 67789999999999999999999999999999999999999877788999999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~ 159 (192)
|+++|+++||+||||+..||++ +.|.|++.|+++||+|..|++++||.++++.||.+.+.++|||++|+|+|+||+|+.
T Consensus 98 C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~IA~ 176 (360)
T 2hxv_A 98 CTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIAD 176 (360)
T ss_dssp HHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSEEEC
T ss_pred HHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcEEEECCccccchhccceeeeccccchhhheeehhhccCCcccC
Confidence 9999999999999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
++|.+.||| ++++.++|+||+.+|+||+|.+
T Consensus 177 ~~G~s~Wit-~~~~~~~~~lr~~~DAILvG~~ 207 (360)
T 2hxv_A 177 HRGDSKWIT-DKLRFKVHEMRNIYSAVLVGAG 207 (360)
T ss_dssp TTSCCTTSC-STTHHHHHHHHHHSSEEEEEHH
T ss_pred CCCCcccCC-HHHHHHHHHHHHHCCEEEECcc
Confidence 999999999 9999999999999999999975
No 2
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=2.8e-62 Score=428.31 Aligned_cols=188 Identities=42% Similarity=0.740 Sum_probs=182.4
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++|+++|+++ ..+.|||+||||||+||+||++|||...++.|||++||+++ +..++|||||||+|||+|+|||||
T Consensus 18 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a---~~~~~g~tlyvTlePC~~~G~t~~ 94 (373)
T 2b3z_A 18 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMA---GAHAEGADIYVTLEPCSHYGKTPP 94 (373)
T ss_dssp HHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHH---GGGGTTCEEEESSCCCCCCSSSCC
T ss_pred HHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHh---hHhcCCeEEEEeCCCccCcCCChH
Confidence 89999999999 66889999999999999999999999999999999999999 457899999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~ 159 (192)
|+++|+++||+||||+..||++.+.|.|++.|+++||+|..|++++||.++++.||++.+.++|||++|+|+|+||+|+.
T Consensus 95 C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~Ia~ 174 (373)
T 2b3z_A 95 CAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIAT 174 (373)
T ss_dssp HHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSBSSC
T ss_pred HHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeEEEeCCcccccccccceeeeeccccchhheeeeeecCCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
++|.+.|||++++++++|+||+.+|+||+|.+
T Consensus 175 ~~G~~~Wit~~~~~~~~~~lr~~~daILvGr~ 206 (373)
T 2b3z_A 175 STGDSKWITSEAARQDAQQYRKTHQSILVGVG 206 (373)
T ss_dssp TTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHCCEEEEChh
Confidence 99999999999999999999999999999974
No 3
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00 E-value=5.1e-62 Score=430.20 Aligned_cols=188 Identities=46% Similarity=0.822 Sum_probs=172.6
Q ss_pred CHHHHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChh
Q psy8195 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (192)
Q Consensus 1 M~~Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~ 79 (192)
|++|+++|+++ ..+.|||+||||||+||+||++|+|...++.|||++||+++ +..++|||||||+|||+|+|||||
T Consensus 34 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~Ai~~a---~~~~~g~tlyvt~ePC~h~G~tp~ 110 (402)
T 2g6v_A 34 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKAKGATAYVTLEPCSHHGRTPP 110 (402)
T ss_dssp HHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHH---GGGGGSSCEEESSCCC-------C
T ss_pred HHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCCCCccHHHHHHHHHh---hHhcCCeEEEEeCCCcCCCCCchH
Confidence 89999999999 66889999999999999999999999999999999999999 556899999999999999999999
Q ss_pred hHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccccCCceeeeeecccCCCcccc
Q psy8195 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (192)
Q Consensus 80 C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~v~~K~A~SlDG~ia~ 159 (192)
|+++|+|+||+||||+..||++.+.|.|++.|+++||+|..|++++||.++++.||++.+.++|||++|+|+|+||+|+.
T Consensus 111 C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~~k~A~SLDG~IA~ 190 (402)
T 2g6v_A 111 CCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAM 190 (402)
T ss_dssp CHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCCEEECTTTTHHHHHTHHHHHHHHSSSCEEEEEEEECTTCBBCC
T ss_pred HHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCcEEEeCCcchhhHHHhhhhhhccccccchheeeeeecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 160 YNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 160 ~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
++|.++|||+++++.++|+||+.+|+||||.+
T Consensus 191 ~~G~s~Wit~~~~r~~~~~lra~~DAILvG~~ 222 (402)
T 2g6v_A 191 ASGESQWITSPQARRDVQLLRAQSHAILTSSA 222 (402)
T ss_dssp ---CCSCSSCHHHHHHHHHHHHHCSEEEEEHH
T ss_pred CCCCcCCcCCHHHHHHHHHHHHhCCEEEECHH
Confidence 99999999999999999999999999999975
No 4
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=259.08 Aligned_cols=141 Identities=24% Similarity=0.372 Sum_probs=112.6
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecC----CCCCccHHHHHHHHHHhc----C----CCCCCeEEEEeC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTK----SPGGNHAEIDALLNAAAQ----G----YDVYNSTVYITL 68 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~----~~~~~HAE~~ai~~a~~~----~----~~~~~~tlYvTl 68 (192)
|++|+++|+++...+ +|+||||||+||+||++|+|. .+++.|||++||+++.+. + +.++|||||||+
T Consensus 30 M~~Al~lA~~a~~~~-~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l~g~tLYvTl 108 (189)
T 3dh1_A 30 MEEAMHMAKEALENT-EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTV 108 (189)
T ss_dssp HHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHhhhCC-CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCcccccccCCeEEEEeC
Confidence 889999999995545 455999999999999999997 689999999999998653 2 247899999999
Q ss_pred CCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhH----HhhhhCC--CeeeeccchHHHHhhccccccccccCC
Q psy8195 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGV----AQLISAG--ISVKQGLMQKEAYEINIGFFSRMQRGI 142 (192)
Q Consensus 69 EPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~----~~l~~~g--i~v~~g~l~~e~~~l~~~f~~~~~~~r 142 (192)
||| +||+++|+|+||+|||||..||..+..|..+ +.|+..| ++|..|++++||.+|++.||.+.++++
T Consensus 109 EPC------~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~~~~~~ 182 (189)
T 3dh1_A 109 EPC------IMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNA 182 (189)
T ss_dssp CCB------HHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC-----
T ss_pred CCh------HHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHHhcCCC
Confidence 999 5999999999999999999988766544332 3455667 999999999999999999999999999
Q ss_pred ceeeee
Q psy8195 143 PWVRMK 148 (192)
Q Consensus 143 P~v~~K 148 (192)
|....|
T Consensus 183 P~~~~k 188 (189)
T 3dh1_A 183 PKSKVR 188 (189)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 976655
No 5
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=1e-38 Score=253.49 Aligned_cols=137 Identities=26% Similarity=0.396 Sum_probs=124.4
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++...+ +++||||||+||+||++|+|.. +++.|||++||++++++ ...++++|||||+|||
T Consensus 20 M~~Al~~A~~a~~~g-~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvTlEPC--- 95 (179)
T 2nx8_A 20 MQEALKESEKSLQKA-EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPC--- 95 (179)
T ss_dssp HHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEECCB---
T ss_pred HHHHHHHHHhccccC-CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEECCCCc---
Confidence 789999999995544 5669999999999999999985 56999999999999875 4578999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhC----CCeeeeccchHHHHhhccccccccccCCce
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA----GISVKQGLMQKEAYEINIGFFSRMQRGIPW 144 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~----gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~ 144 (192)
|||+++|+|+||+||||+..||+++..|.++++|++. +++|..|++++||.++++.||.+++.++|.
T Consensus 96 ---~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~~~ 166 (179)
T 2nx8_A 96 ---VMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKI 166 (179)
T ss_dssp ---HHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcCcc
Confidence 7999999999999999999999999988888888864 799999999999999999999998888775
No 6
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=3.9e-38 Score=245.91 Aligned_cols=134 Identities=27% Similarity=0.430 Sum_probs=122.2
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++... ++++||||||+||+||++|+|.. +++.|||++||+++.++ ...++++|||||+|||
T Consensus 11 m~~A~~~A~~a~~~-~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT~EPC--- 86 (159)
T 2b3j_A 11 MTLAIEEAKKAAQL-GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPC--- 86 (159)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEECCC---
T ss_pred HHHHHHHHHHhhcC-CCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEECCCCc---
Confidence 78999999999554 46669999999999999999986 79999999999999875 4578999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh----CCCeeeeccchHHHHhhccccccccccC
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFSRMQRG 141 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~----~gi~v~~g~l~~e~~~l~~~f~~~~~~~ 141 (192)
|||+++|+|+||+||||+..||+++..|.++++|++ ++++|..|++++||.+|++.||.+++++
T Consensus 87 ---~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~ 154 (159)
T 2b3j_A 87 ---VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRAN 154 (159)
T ss_dssp ---HHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999998888888887 6899999999999999999999887654
No 7
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=1.2e-37 Score=245.04 Aligned_cols=135 Identities=30% Similarity=0.493 Sum_probs=121.7
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++...+ +++||||||+||+||++|+|.. +++.|||++||+++.++ ...++++|||||+|||
T Consensus 13 M~~A~~~A~~a~~~~-~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYvTlEPC--- 88 (168)
T 1z3a_A 13 MRHALTLAKRAWDER-EVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPC--- 88 (168)
T ss_dssp HHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEEECCC---
T ss_pred HHHHHHHHHHhhhcC-CCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEEcCCCc---
Confidence 789999999995544 4559999999999999999984 57899999999999875 4578999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhC----CCeeeeccchHHHHhhccccccccccCC
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA----GISVKQGLMQKEAYEINIGFFSRMQRGI 142 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~----gi~v~~g~l~~e~~~l~~~f~~~~~~~r 142 (192)
|||+++|+|+||+||||+..||+++..|.++++|++. +++|..|++++||.++++.||.+++.++
T Consensus 89 ---~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 157 (168)
T 1z3a_A 89 ---VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEI 157 (168)
T ss_dssp ---HHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999888888875 7999999999999999999999887654
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=1e-37 Score=251.22 Aligned_cols=131 Identities=24% Similarity=0.355 Sum_probs=117.0
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-C-CeEEEEeecC----CCCCccHHHHHHHHHHhcC--CC-----CCCeEEEEe
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-E-KRIISCGYTK----SPGGNHAEIDALLNAAAQG--YD-----VYNSTVYIT 67 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~-g~ii~~g~n~----~~~~~HAE~~ai~~a~~~~--~~-----~~~~tlYvT 67 (192)
|++|+++|+++...+++| ||||||+ | |+||++|+|. .+++.|||++||++++++. .. ++++|||||
T Consensus 32 M~~Al~~A~~a~~~~~~P-vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~g~tlYvT 110 (197)
T 2g84_A 32 MGYVLELVRANIAADGGP-FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTS 110 (197)
T ss_dssp HHHHHHHHHHHHHTTCCS-CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCCEEEEEE
T ss_pred HHHHHHHHHhhhhcCCCC-EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcCCEEEEEe
Confidence 899999999998667888 9999998 8 9999999995 4789999999999998751 22 467999999
Q ss_pred CCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcc--------hhHHhhhhCCCeeeeccchHHHHhhcccccccc
Q psy8195 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSG--------KGVAQLISAGISVKQGLMQKEAYEINIGFFSRM 138 (192)
Q Consensus 68 lEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g--------~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~ 138 (192)
+||| +||+++|+|+||+|||||..||++...| .+++.|+++||+|..|++++||.++++.||.+.
T Consensus 111 lEPC------~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~~~~ 183 (197)
T 2g84_A 111 AEPC------VMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 183 (197)
T ss_dssp ECCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHC
T ss_pred CCCC------HHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 9999 5999999999999999999999876555 577889999999999999999999999999754
No 9
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00 E-value=1.1e-36 Score=240.06 Aligned_cols=132 Identities=30% Similarity=0.346 Sum_probs=119.5
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++... ++++||||||+||+||++|+|.. +++.|||++||+++.+. ...++++|||||+|||
T Consensus 27 M~~A~~~A~~a~~~-~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~EPC--- 102 (171)
T 1wwr_A 27 LKVALREAKRAFEK-GEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPC--- 102 (171)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSCCB---
T ss_pred HHHHHHHHHhcccC-CCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECCCCh---
Confidence 78999999999554 46669999999999999999985 56999999999999875 4578999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh----CCCeeeeccchHHHHhhcccccccccc
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFSRMQR 140 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~----~gi~v~~g~l~~e~~~l~~~f~~~~~~ 140 (192)
|||+++|+|+||+||||+..||+++..|.+++.|++ ++++|.. ++++||.++++.||.++++
T Consensus 103 ---~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 103 ---IMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp ---HHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999988888888885 7999998 9999999999999987764
No 10
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=100.00 E-value=3.7e-36 Score=231.12 Aligned_cols=127 Identities=28% Similarity=0.389 Sum_probs=103.8
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++... ++++||||||+||+||++|+|.. +++.|||++||+++.++ ...++++|||||+|||
T Consensus 8 m~~A~~~A~~a~~~-~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T~ePC--- 83 (144)
T 2a8n_A 8 MELALVEARSAGER-DEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEPC--- 83 (144)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEECCB---
T ss_pred HHHHHHHHHHhhcC-CCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEECCCCh---
Confidence 78999999999554 46669999999999999999985 56999999999999875 4678999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh----CCCeeeeccchHHHHhhcccc
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGF 134 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~----~gi~v~~g~l~~e~~~l~~~f 134 (192)
|||+++|+|+||+||||+..||+++..|.++++|++ ++++|..|++++||.+|++.|
T Consensus 84 ---~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 84 ---TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp ---HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred ---HHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 799999999999999999999999988888999887 799999999999999999877
No 11
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=100.00 E-value=3e-36 Score=236.18 Aligned_cols=132 Identities=23% Similarity=0.274 Sum_probs=114.1
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCC----CCCccHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~--~~~~~~~tlYvTlEPC~~~ 74 (192)
|++|+++|+++...+++++||||||+||+||++|+|.. +++.|||++||++++++ ...++++|||||+|||
T Consensus 15 M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT~EPC--- 91 (164)
T 1wkq_A 15 LKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPC--- 91 (164)
T ss_dssp HHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEECCC---
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEeCCCh---
Confidence 89999999999666767779999999999999999984 57999999999999875 4678999999999999
Q ss_pred CCChhhHHHHHHcCCCEEEEEeeCCCCCCcc----hhHHh----hhhCCCeeeeccchHHHHhhccccccccc
Q psy8195 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSG----KGVAQ----LISAGISVKQGLMQKEAYEINIGFFSRMQ 139 (192)
Q Consensus 75 g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g----~g~~~----l~~~gi~v~~g~l~~e~~~l~~~f~~~~~ 139 (192)
|||+++|+|+||+||||+..||+.+..| ...+. +..++++| .+++++||.++++.||.+..
T Consensus 92 ---~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~~ 160 (164)
T 1wkq_A 92 ---PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFAN 160 (164)
T ss_dssp ---HHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCTT
T ss_pred ---HHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhccC
Confidence 7999999999999999999999876555 44454 33567877 56999999999999997654
No 12
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=100.00 E-value=3.5e-35 Score=229.62 Aligned_cols=127 Identities=25% Similarity=0.371 Sum_probs=112.0
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEE--eCCeEEEEeecCC----CCCccHHHHHHHHHHhcC-CCCCCeEEEEeCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIV--KEKRIISCGYTKS----PGGNHAEIDALLNAAAQG-YDVYNSTVYITLEPCSY 73 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv--~~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~-~~~~~~tlYvTlEPC~~ 73 (192)
|++|+++|+++...+ +++|||||| +||+||++|+|.. +++.|||++||+++.+.+ ..++++|||||+|||
T Consensus 18 M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~~~~~~~~tlYvT~EPC-- 94 (161)
T 1p6o_A 18 MDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC-- 94 (161)
T ss_dssp HHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEEEEEECCC--
T ss_pred HHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhCCccccccccccCCCCC--
Confidence 789999999995544 556999999 6999999999984 578999999999996431 257899999999999
Q ss_pred CCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhcccccccc
Q psy8195 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRM 138 (192)
Q Consensus 74 ~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~ 138 (192)
+||+++|+++||+||||+..||+. |.+.+.|+++||+|.. ++++||.++++.||++.
T Consensus 95 ----~mC~~ai~~agi~rVv~g~~~~~~---g~~~~~l~~~gi~v~~-~~~~e~~~l~~~f~~~~ 151 (161)
T 1p6o_A 95 ----DMCTGAIIMYGIPRCVVGENVNFK---SKGEKYLQTRGHEVVV-VDDERCKKIMKQFIDER 151 (161)
T ss_dssp ----HHHHHHHHHHTCCEEEEEESSSCC---CTHHHHHHHTTCEEEE-CCCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHhCCCEEEEEecCCCC---ccHHHHHHhcCCEEEE-ecHHHHHHHHHHHHHhC
Confidence 699999999999999999998875 4688999999999997 99999999999998764
No 13
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.98 E-value=1.7e-32 Score=220.07 Aligned_cols=120 Identities=38% Similarity=0.534 Sum_probs=104.8
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCC-C---------------------------------------
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-G--------------------------------------- 40 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~-~--------------------------------------- 40 (192)
|++|+++|+++. .++++||||||+||+||++|+|..+ +
T Consensus 7 M~~A~~~A~rs~--~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
T 1vq2_A 7 LQIAYLVSQESK--CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGSTDRF 84 (193)
T ss_dssp HHHHHHHHTTCC--CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC--------------------CE
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccccccc
Confidence 789999999984 4677799999999999999999976 2
Q ss_pred -----------------CccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCC
Q psy8195 41 -----------------GNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLV 103 (192)
Q Consensus 41 -----------------~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~ 103 (192)
+.|||++||.++++.+.+++|+|||||+||| +||+++|+++||+||||+..+| ..
T Consensus 85 ~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC------~~Ca~aIi~aGI~rVvy~~~~~--~~ 156 (193)
T 1vq2_A 85 VLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYCETYD--KN 156 (193)
T ss_dssp EECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCC------HHHHHHHHHHTCCEEEEEECCT--TC
T ss_pred ccchhhccccccccCCCCCCHHHHHHHHHHhcCCCcCCeEEEEeCCCc------HHHHHHHHHhCCCEEEEecCCC--Cc
Confidence 6799999999999888889999999999999 6999999999999999995544 44
Q ss_pred cchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 104 SGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 104 ~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
.+.+.++|+++||+|.. +..+++.+++
T Consensus 157 ~~~~~~~l~~aGI~v~~-~~~~~~~~~~ 183 (193)
T 1vq2_A 157 KPGWDDILRNAGIEVFN-VPKKNLNKLN 183 (193)
T ss_dssp CTTTTHHHHHTTCEEEE-CCGGGCCSSC
T ss_pred chHHHHHHHHCCCEEEE-eCHHHHHHhc
Confidence 45556999999999998 7778887765
No 14
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.98 E-value=4e-33 Score=221.11 Aligned_cols=124 Identities=32% Similarity=0.537 Sum_probs=104.0
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC--------------C---------CccHHHHHHHHHHhcC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP--------------G---------GNHAEIDALLNAAAQG 56 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~--------------~---------~~HAE~~ai~~a~~~~ 56 (192)
|++|+++|+++. .|+|+||||||+ ||+||++|+|..+ + +.|||++||.++. +
T Consensus 17 M~~A~~~A~~s~--~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~--g 92 (178)
T 2w4l_A 17 MAVAFLSAQRSK--DPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN--L 92 (178)
T ss_dssp HHHHHHHHTTCC--CSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-----
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc--C
Confidence 789999999884 468889999995 9999999999864 2 5899999999974 5
Q ss_pred CCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEee---CCCCCCcchhHHhhhhCCCeeeeccchHHHHhhccc
Q psy8195 57 YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN---DPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133 (192)
Q Consensus 57 ~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~---dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~ 133 (192)
..++|+|||||+||| +||+++|+++||+||||+.. ||++.+ .|+++|+++||+|.. +++++.+++..
T Consensus 93 ~~~~g~tlYvTlePC------~~Ca~aIi~agI~rVVy~~~~~~d~~~~~--~~~~~L~~aGI~V~~--~~~~~~~l~~~ 162 (178)
T 2w4l_A 93 TDVKGCSMYVALFPC------NECAKLIIQAGIKEVIFMSDKYHDSDEAT--AARLLFNMAGVTFRK--FIPKCSKIVID 162 (178)
T ss_dssp -CCTTCEEEEEECCC------HHHHHHHHHTTCCEEEEEECTTTTSHHHH--HHHHHHHHHTCEEEE--CCCSCSEEEEE
T ss_pred CCccccEEEEeCCcH------HHHHHHHHHHCCCEEEEEeccCCCCcchH--HHHHHHHHCCCEEEE--ccHHHHHHHHH
Confidence 789999999999999 49999999999999999988 333322 368999999999987 88999999999
Q ss_pred ccccc
Q psy8195 134 FFSRM 138 (192)
Q Consensus 134 f~~~~ 138 (192)
|..+.
T Consensus 163 f~~~~ 167 (178)
T 2w4l_A 163 FDSIN 167 (178)
T ss_dssp GGGC-
T ss_pred HHhhc
Confidence 97764
No 15
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.97 E-value=2.1e-32 Score=217.87 Aligned_cols=114 Identities=30% Similarity=0.437 Sum_probs=101.6
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEeCCeEEEEeecCCC-------------------CCccHHHHHHHHHHhcCCCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-------------------GGNHAEIDALLNAAAQGYDVYN 61 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~~g~ii~~g~n~~~-------------------~~~HAE~~ai~~a~~~~~~~~~ 61 (192)
|++|+++|+++. .|+++||||||+||+||++|+|... ++.|||++||+++.+++..+++
T Consensus 46 M~~A~~~A~~s~--~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g~~l~g 123 (184)
T 2hvw_A 46 MANAELISKRST--CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANN 123 (184)
T ss_dssp HHHHHHHGGGCC--CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcCCCcee
Confidence 789999999984 5688899999999999999999853 3789999999999888888999
Q ss_pred eEEEEeCCCCCCCCCChhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchH
Q psy8195 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQK 125 (192)
Q Consensus 62 ~tlYvTlEPC~~~g~tp~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~ 125 (192)
+|||||+||| +||+++|+|+||+||||+..||++. .++++|+++||+|..+++++
T Consensus 124 ~tlYvTlEPC------~mCa~aIi~agI~rVVy~~~~~~~~---~~~~~L~~aGIeV~~~~~~~ 178 (184)
T 2hvw_A 124 TEIYVTHFPC------INCTKALLQAGVKKITYNTAYRIHP---FAIELMTQKEVEYVQHDVPR 178 (184)
T ss_dssp EEEEEEECCC------HHHHHHHHHHTEEEEEEEECCSCCH---HHHHHHHHHTCEEEECCCCC
T ss_pred EEEEECCCCH------HHHHHHHHHHCCCeEEEEecCCCCH---HHHHHHHHCCCEEEEecchh
Confidence 9999999999 5999999999999999999988753 25899999999999876654
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.94 E-value=1.5e-27 Score=193.48 Aligned_cols=90 Identities=24% Similarity=0.421 Sum_probs=80.8
Q ss_pred ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHHcCCCE
Q psy8195 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKK 91 (192)
Q Consensus 12 ~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~gI~r 91 (192)
..+.|||+||||||+||+||++|.+ ++.|||++||+ +..++|||||||+||| +||+++|+|+||+|
T Consensus 16 ~~t~PNPpVGAVIVkDGeIIA~Ge~---gTaHAEInAIr-----g~~L~GaTLYVTLEPC------~MCAgAII~AGIkR 81 (278)
T 3g8q_A 16 LNEIPKRTVTAALLEGGEIVAVEEA---DDEHAERKLVR-----RHDVEGKVVFVTARPC------LYCARELAEAGVAG 81 (278)
T ss_dssp HHHSCCSSCEEEEEETTEEEEEEEC---SSSCHHHHHHH-----HSCCTTCEEEESSCCC------HHHHHHHHTTTCCE
T ss_pred hccCCCCCEEEEEEECCEEEEecCC---CCCCHHHHHhC-----CCCCCCcEEEEeCCch------HHHHHHHHHhCCCE
Confidence 3568999999999999999999943 99999999998 3578999999999999 49999999999999
Q ss_pred EEEEeeCCCCCCcchhHHhhhhCCCeeee
Q psy8195 92 VIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (192)
Q Consensus 92 vv~~~~dp~~~~~g~g~~~l~~~gi~v~~ 120 (192)
|||+..+ .|.|.+.|+++||+|..
T Consensus 82 VVYGa~~-----~G~G~e~LreAGIEV~~ 105 (278)
T 3g8q_A 82 VVYLGRG-----RGLGPYYLARSGVEVVE 105 (278)
T ss_dssp EEEEECS-----SCCHHHHHHTTTCEEEE
T ss_pred EEEEecC-----CChhHHHHHHCCCEEEE
Confidence 9999964 35688999999999886
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.91 E-value=3.2e-24 Score=171.27 Aligned_cols=125 Identities=19% Similarity=0.305 Sum_probs=99.2
Q ss_pred CCCCCeEEEEEEe--C---CeEEEEeecCC-CCCccHHHHHHHHHHhc-CCCCC-CeEEEEeCCCCCCCCCChhhHHHHH
Q psy8195 14 SSPNPRVGCVIVK--E---KRIISCGYTKS-PGGNHAEIDALLNAAAQ-GYDVY-NSTVYITLEPCSYFGYTPPCTEALI 85 (192)
Q Consensus 14 ~~~~p~vGaviv~--~---g~ii~~g~n~~-~~~~HAE~~ai~~a~~~-~~~~~-~~tlYvTlEPC~~~g~tp~C~~ai~ 85 (192)
.+.+..+.|..|+ + +.|+++|+|+. +++.|||++||++++++ +..+. ++|||||+|||. ||+++|+
T Consensus 29 ~~r~~tyLcy~v~~~~~~~~~ii~~G~~~~~~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC~------~Ca~aIi 102 (190)
T 2nyt_A 29 SGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCA------ACADRII 102 (190)
T ss_pred CCCCceEEEEEEEecCCCCCCeEEEEECCCCCCCcCHHHHHHHHHHHhcCccccCCeEEEEEcChHH------HHHHHHH
Confidence 4566679999997 3 56999999998 79999999999999753 23445 999999999995 9999999
Q ss_pred Hc-----CCCEEEEEeeCCC---CCCcchhHHhhhhCCCeeeeccchHHHHhhccccccccc-cCC---ceeeeee
Q psy8195 86 KS-----GIKKVIIAINDPN---PLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQ-RGI---PWVRMKI 149 (192)
Q Consensus 86 ~~-----gI~rvv~~~~dp~---~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~-~~r---P~v~~K~ 149 (192)
++ ||++|||+..|+. +.+. .|++.|+++||+|.. +..+ +++..|+.... .++ ||+.+|.
T Consensus 103 ~al~~~~gI~rVV~~~~d~~~~~p~~~-~g~~~L~~aGI~V~~--~~~~--e~~~~w~~fv~~~~~~~~pf~~W~~ 173 (190)
T 2nyt_A 103 KTLSKTKNLRLLILVGRLFMWEEPEIQ-AALKKLKEAGCKLRI--MKPQ--DFEYVWQNFVEQEEGESKAFQPWED 173 (190)
T ss_pred HhhhhcCCccEEEEEeecCCcCChHHH-HHHHHHHHCCCEEEE--ecHH--HHHHHHHHHHHccCCcCCccHhHHh
Confidence 99 9999999998874 3333 689999999999986 3332 45555666655 567 8887763
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.45 E-value=3.6e-13 Score=101.98 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=68.6
Q ss_pred CHHHHHHHhhcccC-CCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcC-CCCCCeEEEEe----CC
Q psy8195 1 MTLALQQAKLSINS-SPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQG-YDVYNSTVYIT----LE 69 (192)
Q Consensus 1 M~~Ai~~A~~~~~~-~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~-~~~~~~tlYvT----lE 69 (192)
|+.|++.++++... +..| |||+|+. ||+|+ .|+|... ++.|||+.||.++...+ ..++.+++|++ ++
T Consensus 7 ~~~A~~aa~~ayapYs~~~-VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~G~~~~~~~~l~~~~~~~~~ 84 (136)
T 1uwz_A 7 ITEALKARDMAYAPYSKFQ-VGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAADTPGPVS 84 (136)
T ss_dssp HHHHHHHHTTCBCTTTCCC-EEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEESCSSSCC
T ss_pred HHHHHHHHHhccCccCCCC-EEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHCCCCCeEEEEEEeCCCCccC
Confidence 56788888888555 5666 9999997 99999 7999763 68999999999998775 46799999996 99
Q ss_pred CCCCCCCChhhHHHHHHcCC
Q psy8195 70 PCSYFGYTPPCTEALIKSGI 89 (192)
Q Consensus 70 PC~~~g~tp~C~~ai~~~gI 89 (192)
|| +||.++|.+.+-
T Consensus 85 PC------g~Crq~l~e~~~ 98 (136)
T 1uwz_A 85 PC------GACRQVISELCT 98 (136)
T ss_dssp CC------HHHHHHHHHHSC
T ss_pred HH------HHHHHHHHHcCC
Confidence 99 699999999873
No 19
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=99.38 E-value=1.6e-13 Score=114.57 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=49.0
Q ss_pred cCCceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 140 ~~rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
.++|||++|+|+|+||+ +..+|.++|||+++++.++|+||+.+||||||.+
T Consensus 31 ~~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~~DaIlvG~~ 81 (270)
T 2p4g_A 31 INEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAE 81 (270)
T ss_dssp HHCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHH
T ss_pred CCCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHHCCEEEEChH
Confidence 57999999999999999 9999999999999999999999999999999975
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.32 E-value=8.6e-12 Score=95.42 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=67.8
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcC-CCCCCeEEEEe-----CC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQG-YDVYNSTVYIT-----LE 69 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~-~~~~~~tlYvT-----lE 69 (192)
|++|++.++++.....+.+|||+|+. ||+|+ .|.|... .+.|||..||.+|...+ ..++..++|++ ++
T Consensus 19 ~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~~~~~~~~ 97 (146)
T 2fr5_A 19 LLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFIS 97 (146)
T ss_dssp HHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSSCCC
T ss_pred HHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeCCCCcccC
Confidence 45677777777554344459999995 99998 6999764 57999999999998876 45789999998 99
Q ss_pred CCCCCCCChhhHHHHHHcCCCEE
Q psy8195 70 PCSYFGYTPPCTEALIKSGIKKV 92 (192)
Q Consensus 70 PC~~~g~tp~C~~ai~~~gI~rv 92 (192)
|| +||.+.|.+.+ +.+
T Consensus 98 PC------G~Crq~l~E~~-~~~ 113 (146)
T 2fr5_A 98 PC------GACRQVMREFG-TDW 113 (146)
T ss_dssp CC------HHHHHHHHHTC-SSC
T ss_pred CC------HHHHHHHHHhC-CCC
Confidence 99 79999999998 443
No 21
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.31 E-value=1.3e-11 Score=92.71 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=68.2
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC--CCCccHHHHHHHHHHhcC-CCCCCeEEEE-----eCCCC
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS--PGGNHAEIDALLNAAAQG-YDVYNSTVYI-----TLEPC 71 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~--~~~~HAE~~ai~~a~~~~-~~~~~~tlYv-----TlEPC 71 (192)
|+.|+++++++...+..| |||+|+. ||+|+ .|.|.. .++.|||..||.++...+ ..++..++|+ +++||
T Consensus 11 ~~~A~~a~~~ay~~s~f~-VGAal~~~dG~i~-~G~NvE~~~~t~cAE~~Ai~~A~~~G~~~~~~i~vv~~~~~~~~~PC 88 (130)
T 2z3g_A 11 IERATATINSIPISEDYS-VASAALSSDGRIF-TGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENRGILSPC 88 (130)
T ss_dssp HHHHHHHHHHSCCCSSSC-EEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEETTTTEEECCC
T ss_pred HHHHHHHHHhhCCCCCCC-EEEEEEecCCeEE-EEeccccCCcccCHHHHHHHHHHHcCCCceEEEEEEECCCCCccCcC
Confidence 467888888885555555 9999996 99988 599976 468999999999998875 4678899998 79999
Q ss_pred CCCCCChhhHHHHHHcCCC
Q psy8195 72 SYFGYTPPCTEALIKSGIK 90 (192)
Q Consensus 72 ~~~g~tp~C~~ai~~~gI~ 90 (192)
+||.+.|.+.+-.
T Consensus 89 ------G~Crq~l~e~~~~ 101 (130)
T 2z3g_A 89 ------GRCRQVLLDLHPG 101 (130)
T ss_dssp ------HHHHHHHHHHCTT
T ss_pred ------HHHHHHHHHhCCC
Confidence 6999999998743
No 22
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=98.93 E-value=1.3e-10 Score=92.77 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=47.9
Q ss_pred ccCCceeeeeecccCCCccccCCCCccccCCHHH----HHHHHHHHhhcCeEEEccC
Q psy8195 139 QRGIPWVRMKIASSLDNKTSLYNNSSQWITSKES----RNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 139 ~~~rP~v~~K~A~SlDG~ia~~~g~s~~it~~~s----r~~~h~lR~~~daIlvG~~ 191 (192)
-+++|+|++|+|+|+||+|+.++|.+.||+++.+ +..+|++|+..|+||+|.+
T Consensus 16 ~~~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~ 72 (197)
T 3ky8_A 16 YFQGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRN 72 (197)
T ss_dssp TTTTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHH
T ss_pred hcCCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHhCCEEEEcHH
Confidence 3679999999999999999999999999999865 3678999999999999964
No 23
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.81 E-value=1.4e-08 Score=77.14 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=63.8
Q ss_pred CHHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCCC-CCeEEEE--------
Q psy8195 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDV-YNSTVYI-------- 66 (192)
Q Consensus 1 M~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~-~~~tlYv-------- 66 (192)
|+.|++.++++..... | |||+|+. ||+|+ .|.|... .+.|||..||.++...+... +...+|.
T Consensus 8 ~~~A~~a~~~ayaPyS-~-VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~~~~~~~~v~~~~~~~~~~ 84 (142)
T 3b8f_A 8 YDVVKQLIEQRYPNDW-G-GAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLARENEHSELK 84 (142)
T ss_dssp HHHHHHHHHHHCSSSC-E-EEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEESSTTSCCE
T ss_pred HHHHHHHHHhcCCCCC-C-EEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCCCcEEEEEEEecCCCCCCC
Confidence 4567788887755444 4 9999986 99988 7999754 58999999999998776543 5555555
Q ss_pred eCCCCCCCCCChhhHHHHHHcCCCEEEE
Q psy8195 67 TLEPCSYFGYTPPCTEALIKSGIKKVII 94 (192)
Q Consensus 67 TlEPC~~~g~tp~C~~ai~~~gI~rvv~ 94 (192)
++-|| .+|.+.|.+.+-.-.|+
T Consensus 85 ~~sPC------G~CRq~l~e~~~~~~v~ 106 (142)
T 3b8f_A 85 VLSPC------GVCQERLFYWGPEVQCA 106 (142)
T ss_dssp ECCCC------HHHHHHHGGGCTTCEEE
T ss_pred CCCcH------HHHHHHHHHhCCCCEEE
Confidence 45599 69999999997544344
No 24
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=98.74 E-value=7e-08 Score=73.30 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=61.9
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCC--CCCeEEEEe----C-C
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD--VYNSTVYIT----L-E 69 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~--~~~~tlYvT----l-E 69 (192)
+.|++.++++.....+.+|||+|+. ||+|+ .|.|-.. .+.|||..||.++...+.. ++..++|.. + .
T Consensus 16 ~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~~~~~~ 94 (142)
T 1r5t_A 16 RAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSEDQCVS 94 (142)
T ss_dssp HHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCSSSCCC
T ss_pred HHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCCCcccC
Confidence 4566666666443234449999996 99988 4988753 5899999999999877643 778888874 5 8
Q ss_pred CCCCCCCChhhHHHHHHcC
Q psy8195 70 PCSYFGYTPPCTEALIKSG 88 (192)
Q Consensus 70 PC~~~g~tp~C~~ai~~~g 88 (192)
|| ++|.+.|.+.+
T Consensus 95 PC------G~CRq~l~e~~ 107 (142)
T 1r5t_A 95 PC------GVCRQFINEFV 107 (142)
T ss_dssp CC------HHHHHHHHTTS
T ss_pred HH------HHHHHHHHHhC
Confidence 99 69999999986
No 25
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=98.66 E-value=1.1e-07 Score=71.89 Aligned_cols=86 Identities=24% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCCCCCeEEEEe------CCC
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT------LEP 70 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~~~~~tlYvT------lEP 70 (192)
+.|++.++++.....+.+|||+|+. ||+|+ .|.|-.. .+.|||..||.++...+.. +=..++++ +.|
T Consensus 15 ~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~-~i~aiav~~~~~~~~~P 92 (138)
T 3r2n_A 15 KAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGGG-RLVAVYCVDGNGDSLMP 92 (138)
T ss_dssp HHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEEEEEEECTTSCBCCC
T ss_pred HHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCCC-ceEEEEEEcCCCCcCCC
Confidence 4455555555333334459999997 99987 7999764 4889999999999887642 22346666 799
Q ss_pred CCCCCCChhhHHHHHHcCCCEEEEE
Q psy8195 71 CSYFGYTPPCTEALIKSGIKKVIIA 95 (192)
Q Consensus 71 C~~~g~tp~C~~ai~~~gI~rvv~~ 95 (192)
| ++|.+.|.+.+-..|++.
T Consensus 93 C------G~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 93 C------GRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp C------HHHHHHHHHHHCTTCEEE
T ss_pred C------HHHHHHHHHhCCCCEEEE
Confidence 9 799999999763345543
No 26
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=98.64 E-value=1.8e-07 Score=70.90 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=58.7
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCC-CCCCeEEEEe----CCCC
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY-DVYNSTVYIT----LEPC 71 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~-~~~~~tlYvT----lEPC 71 (192)
++|++.++++.....+.+|||+|+. ||+|+ .|.|-.. .+.|||..||-++...+. .++...++.. +.||
T Consensus 17 ~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~~~~~~~~PC 95 (141)
T 2d30_A 17 QEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKRPVPPC 95 (141)
T ss_dssp HHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSCCCCC
T ss_pred HHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEeCCCCccCcC
Confidence 4566666666444334459999996 99877 7999753 579999999999987764 3444444443 7899
Q ss_pred CCCCCChhhHHHHHHcC
Q psy8195 72 SYFGYTPPCTEALIKSG 88 (192)
Q Consensus 72 ~~~g~tp~C~~ai~~~g 88 (192)
++|.+.|.+.+
T Consensus 96 ------G~CRQ~l~E~~ 106 (141)
T 2d30_A 96 ------GACRQVMVELC 106 (141)
T ss_dssp ------HHHHHHHHHHS
T ss_pred ------HHHHHHHHHhc
Confidence 79999999986
No 27
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=98.21 E-value=5.1e-06 Score=63.44 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=59.4
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCC-CCCCeEEEE----eCCCC
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY-DVYNSTVYI----TLEPC 71 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~-~~~~~tlYv----TlEPC 71 (192)
+.|++..+.+.....+.+|||+|.. ||+|+ .|.|-.+ .+.|||..||-++...+. .++...++. .+.||
T Consensus 30 ~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~~~i~aiavv~~~~~~~~PC 108 (150)
T 3mpz_A 30 SKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGGVLMPC 108 (150)
T ss_dssp HHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTTSCBCCCC
T ss_pred HHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCCCceEEEEEEcCCCCccCCC
Confidence 3455555555433334459999987 99988 7999764 478999999999987764 343333332 36899
Q ss_pred CCCCCChhhHHHHHHcCCCEEEE
Q psy8195 72 SYFGYTPPCTEALIKSGIKKVII 94 (192)
Q Consensus 72 ~~~g~tp~C~~ai~~~gI~rvv~ 94 (192)
.+|-+.|.+.+-..+++
T Consensus 109 ------G~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 109 ------GRCRQVLLEHGGPELLI 125 (150)
T ss_dssp ------HHHHHHHHHHHCTTCEE
T ss_pred ------HHHHHHHHHhCCCCEEE
Confidence 79999999975333433
No 28
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.13 E-value=8.6e-06 Score=68.66 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcCC---CCCCeEEEEeCC----
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGY---DVYNSTVYITLE---- 69 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~~---~~~~~tlYvTlE---- 69 (192)
+.|++.++++.....+.+|||+|+. ||+|+ +|.|-. ..+.|||..||.++...|. .++..++|.+.+
T Consensus 193 ~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~~~~s 271 (294)
T 1ctt_A 193 QAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLI 271 (294)
T ss_dssp HHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTTCSSC
T ss_pred HHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCCCCcC
Confidence 5678888877554434459999996 88766 588864 3789999999999987763 578899999887
Q ss_pred CCCCCCCChhhHHHHHHcCCC
Q psy8195 70 PCSYFGYTPPCTEALIKSGIK 90 (192)
Q Consensus 70 PC~~~g~tp~C~~ai~~~gI~ 90 (192)
|| +||.+.|...+-.
T Consensus 272 PC------G~CRq~L~ef~~~ 286 (294)
T 1ctt_A 272 QW------DATSATLKALGCH 286 (294)
T ss_dssp CH------HHHHHHHHHHTCC
T ss_pred cc------HHHHHHHHHHCCC
Confidence 99 6999999997643
No 29
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.05 E-value=2.1e-05 Score=66.31 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHhh-cccCCCCCeEEEEEEe-CCeEEEEeecCCC------CCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCC
Q psy8195 6 QQAKL-SINSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYT 77 (192)
Q Consensus 6 ~~A~~-~~~~~~~p~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~t 77 (192)
..|++ +.....+.+|||+++. ||+|+ .|.|-.+ .+.|||..||-++...|.. +-..++++..||
T Consensus 58 ~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~~-~~~~iav~~~PC------ 129 (294)
T 1ctt_A 58 PLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEK-ALAAITVNYTPC------ 129 (294)
T ss_dssp HHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCC-CEEEEEESSCCC------
T ss_pred HHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCCC-cEEEEEEEcCCC------
Confidence 34444 3443235559999996 99887 7999754 2689999999999877643 456777889999
Q ss_pred hhhHHHHHHcC
Q psy8195 78 PPCTEALIKSG 88 (192)
Q Consensus 78 p~C~~ai~~~g 88 (192)
++|.+.|.+.+
T Consensus 130 G~CRQ~l~E~~ 140 (294)
T 1ctt_A 130 GHCRQFMNELN 140 (294)
T ss_dssp HHHHHHHTTBT
T ss_pred HHHHHHHHHhC
Confidence 79999999986
No 30
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=97.76 E-value=0.0002 Score=53.85 Aligned_cols=77 Identities=26% Similarity=0.444 Sum_probs=54.4
Q ss_pred HHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCCC----CCccHHHHHHHHHHhcCCC---CCCeEEEEe------C
Q psy8195 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD---VYNSTVYIT------L 68 (192)
Q Consensus 3 ~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~~----~~~HAE~~ai~~a~~~~~~---~~~~tlYvT------l 68 (192)
+|.+..+++.....+.+|||++.. ||+|. .|.|-.+ .+.+||..||-++...|.. ++ .+.+. +
T Consensus 17 ~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~--aiavv~~~~~~~ 93 (138)
T 3dmo_A 17 AAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFA--AIAVVGETHGPI 93 (138)
T ss_dssp HHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEE--EEEEEESCSSSC
T ss_pred HHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEE--EEEEEcCCCCcc
Confidence 444444444444445569999987 89976 4888754 4789999999999877643 33 23333 5
Q ss_pred CCCCCCCCChhhHHHHHHcC
Q psy8195 69 EPCSYFGYTPPCTEALIKSG 88 (192)
Q Consensus 69 EPC~~~g~tp~C~~ai~~~g 88 (192)
-|| ..|-+.|.+.+
T Consensus 94 ~PC------G~CRQ~l~Ef~ 107 (138)
T 3dmo_A 94 APC------GACRQVMIELG 107 (138)
T ss_dssp CCC------HHHHHHHHHHH
T ss_pred CCC------HHHHHHHHHhC
Confidence 799 69999999974
No 31
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=97.49 E-value=0.0012 Score=50.71 Aligned_cols=64 Identities=30% Similarity=0.415 Sum_probs=47.3
Q ss_pred eEEEEEEe-CCeEEEEeecCC--CCCccHHHHHHHHHHhcCCCCCCeEEEEe------CCCCCCCCCChhhHHHHHHcCC
Q psy8195 19 RVGCVIVK-EKRIISCGYTKS--PGGNHAEIDALLNAAAQGYDVYNSTVYIT------LEPCSYFGYTPPCTEALIKSGI 89 (192)
Q Consensus 19 ~vGaviv~-~g~ii~~g~n~~--~~~~HAE~~ai~~a~~~~~~~~~~tlYvT------lEPC~~~g~tp~C~~ai~~~gI 89 (192)
+|||+|.. ||+|+ .|.|-. ..+.+||..||-++...+..--...+-++ .-|| ..|-+.|...+-
T Consensus 52 ~VGAAll~~dG~i~-tG~NVEn~~~~lCAEr~Ai~~Avs~G~~~~~ai~vv~~~~~~~~~PC------G~CRQvL~Ef~~ 124 (158)
T 3oj6_A 52 SVASAAISDDGRVF-SGVNVYHFNGGPCAELVVLGVAAAAGATKLTHIVAIANEGRGILSPC------GRCRQVLADLHP 124 (158)
T ss_dssp CEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEETTTTEEECCC------HHHHHHHHHHST
T ss_pred cEEEEEEeCCCCEE-EEEccccCCccccHHHHHHHHHHHhCCCceEEEEEEeCCCCCcCCCC------HHHHHHHHHhCC
Confidence 49999987 99987 688763 36789999999999877653222333332 3599 799999999763
No 32
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=96.57 E-value=0.014 Score=49.02 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred ccCCCCCeEEEEEEe-CCeEEEEeecCCC------CCccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHH
Q psy8195 12 INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEAL 84 (192)
Q Consensus 12 ~~~~~~p~vGaviv~-~g~ii~~g~n~~~------~~~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai 84 (192)
.....+.+|||++.. ||+|+ .|.|-.. .+.|||..||-++...|+. +=..+.+..-|| +.|-+.|
T Consensus 68 yaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~-~i~~iav~~~PC------G~CRQ~l 139 (298)
T 4eg2_A 68 YAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK-GVADITINFSPC------GHCRQFM 139 (298)
T ss_dssp BCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS-CEEEEEESSCCC------HHHHHHH
T ss_pred cCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC-ceEEEEeecCCC------HHHHHHH
Confidence 444445559999987 89976 4888753 3789999999999877643 234567779999 7999999
Q ss_pred HHcCC
Q psy8195 85 IKSGI 89 (192)
Q Consensus 85 ~~~gI 89 (192)
.+.+-
T Consensus 140 ~Ef~~ 144 (298)
T 4eg2_A 140 NELTT 144 (298)
T ss_dssp TTBTT
T ss_pred HHhcC
Confidence 99874
No 33
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=95.76 E-value=0.043 Score=46.09 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=55.5
Q ss_pred HHHHHHHhhcccCCCCCeEEEEEEe-CCeEEEEeecCC----CCCccHHHHHHHHHHhcCCC---CCCeEEEEe----CC
Q psy8195 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGYD---VYNSTVYIT----LE 69 (192)
Q Consensus 2 ~~Ai~~A~~~~~~~~~p~vGaviv~-~g~ii~~g~n~~----~~~~HAE~~ai~~a~~~~~~---~~~~tlYvT----lE 69 (192)
+.|++.++++.....+.+|||.|.. ||+|.. |.|-. .++..||..||-++...|.. ++...++-. +-
T Consensus 197 ~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iyt-G~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~~~~~s 275 (298)
T 4eg2_A 197 QQALRAMNISHSPYTQNFSGVALKMRSGAIYL-GAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESATGKIS 275 (298)
T ss_dssp HHHHHHHTTCBCTTTCCCEEEEEEETTSCEEE-EECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTTCSSC
T ss_pred HHHHHHHHhccCCccCCCeEEEEEeCCCCEEE-EEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCCCCCcC
Confidence 4567777776544444459999997 899764 77653 36899999999999877653 444444433 34
Q ss_pred CCCCCCCChhhHHHHHHcC
Q psy8195 70 PCSYFGYTPPCTEALIKSG 88 (192)
Q Consensus 70 PC~~~g~tp~C~~ai~~~g 88 (192)
|| .+|-..|...+
T Consensus 276 PC------G~CRqvL~e~~ 288 (298)
T 4eg2_A 276 HL------ADTQATLEVIN 288 (298)
T ss_dssp CH------HHHHHHHHHHC
T ss_pred Cc------HHHHHHHHHhC
Confidence 77 58888888765
No 34
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=94.09 E-value=0.19 Score=39.83 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=49.2
Q ss_pred CccHHHHHHHHHHhcC---CCCCCeEEEEeCCCCCCCCCChhhHHHHHHc-----CCCEEEEEeeCCC-CCCcchhHHhh
Q psy8195 41 GNHAEIDALLNAAAQG---YDVYNSTVYITLEPCSYFGYTPPCTEALIKS-----GIKKVIIAINDPN-PLVSGKGVAQL 111 (192)
Q Consensus 41 ~~HAE~~ai~~a~~~~---~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~~-----gI~rvv~~~~dp~-~~~~g~g~~~l 111 (192)
..|||+.-|....... ...=.-|.|+|-.|| |.|+..|+.. ++.=.+|++.--. ....-.|+..|
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC------~~CA~~v~~FL~~~~~v~L~If~aRLY~~~~~~~~gLr~L 151 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPC------FSCAQEMAKFISKNKHVSLCIKTARIYDDQGRCQEGLRTL 151 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCCh------HHHHHHHHHHHhhCCCeEEEEEEEeecccCchHHHHHHHH
Confidence 4799999999885321 112356789999999 5899999883 3433334332111 11223589999
Q ss_pred hhCCCeeee
Q psy8195 112 ISAGISVKQ 120 (192)
Q Consensus 112 ~~~gi~v~~ 120 (192)
.++|+.|..
T Consensus 152 ~~aG~~v~i 160 (203)
T 3v4k_A 152 AEAGAKISI 160 (203)
T ss_pred HHCCCeEEe
Confidence 999998875
No 35
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=93.98 E-value=0.28 Score=38.50 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCccHHHHHHHHHHhcCCCC---CCeEEEEeCCCCCCCCCChhhHHHHHH-----cCCCEEEEEeeCCCCC--CcchhHH
Q psy8195 40 GGNHAEIDALLNAAAQGYDV---YNSTVYITLEPCSYFGYTPPCTEALIK-----SGIKKVIIAINDPNPL--VSGKGVA 109 (192)
Q Consensus 40 ~~~HAE~~ai~~a~~~~~~~---~~~tlYvTlEPC~~~g~tp~C~~ai~~-----~gI~rvv~~~~dp~~~--~~g~g~~ 109 (192)
+..|||+.=|.......-+. =.-|-|+|-.|| +.|+..|.. .++.=.+|++.--.-. ..-.|+.
T Consensus 63 ~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC------~~CA~~va~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr 136 (190)
T 3vow_A 63 THCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPC------PDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLR 136 (190)
T ss_dssp GGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCC------HHHHHHHHHHHHHCTTEEEEEEEEECTTTTSHHHHHHHH
T ss_pred ccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCch------HHHHHHHHHHHHhCCCeEEEEEEEecccccCchHHHHHH
Confidence 56799999999874321111 247889999999 599999987 3566666666532211 1235889
Q ss_pred hhhhCCCeeee
Q psy8195 110 QLISAGISVKQ 120 (192)
Q Consensus 110 ~l~~~gi~v~~ 120 (192)
.|.++|+.|..
T Consensus 137 ~L~~~G~~v~i 147 (190)
T 3vow_A 137 SLSQEGVAVEI 147 (190)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHCCCcEEE
Confidence 99999998875
No 36
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=70.56 E-value=3.6 Score=31.88 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=31.0
Q ss_pred eeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhhcCeEEEccC
Q psy8195 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN 191 (192)
Q Consensus 144 ~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~~daIlvG~~ 191 (192)
.+.+-+|+|+||.|+ ++|.--|.-.++- ++.-. ....|+||.|.+
T Consensus 24 ~i~~i~A~s~dG~IG-~~g~lpW~~~~D~-~~fk~-~t~~~~vIMGRk 68 (190)
T 3ix9_A 24 KIVAIWAQDEEGVIG-KDNRLPWYLPAEL-QHFKE-TTLNHAILMGRV 68 (190)
T ss_dssp CEEEEEEECTTCEEE-BTTBCSCCCHHHH-HHHHH-HHTTSEEEEEHH
T ss_pred eEEEEEEECCCCcEe-CCCCcCCCChHHH-HHHHH-HhcCCeEEEcCc
Confidence 378889999999996 7777778654443 33322 233599999853
No 37
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=45.08 E-value=16 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.112 Sum_probs=14.3
Q ss_pred eeeeeecccCCCccccC
Q psy8195 144 WVRMKIASSLDNKTSLY 160 (192)
Q Consensus 144 ~v~~K~A~SlDG~ia~~ 160 (192)
-++.-+++||||+++..
T Consensus 22 kl~~~~~vSLDG~~ag~ 38 (231)
T 3kgy_A 22 KVFVNISLSLDGFMAPE 38 (231)
T ss_dssp CEEEEEEEETTSEEECT
T ss_pred eEEEEEEEcccccccCC
Confidence 36778999999999864
No 38
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=38.92 E-value=99 Score=27.72 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCChhhHH
Q psy8195 5 LQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCTE 82 (192)
Q Consensus 5 i~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvT-lEPC~~~g~tp~C~~ 82 (192)
+..|++. ..+..|- -|+++||+.|+.|.-+.. ..|+-..|+.+|.+.+.+++|+.|=.- .-|= +-|..
T Consensus 422 L~FAw~v~K~vKSNA---Iv~akdg~tvGiGaGQ~s-RV~s~r~A~~kA~~~g~~~~G~vlASDAFFPF------~D~ve 491 (534)
T 4ehi_A 422 LEIAMKIAAFTKSNN---VVYVKNGAMVAIGMGMTS-RIDAAKAAIAKAKEMGLDLQGCVLASEAFFPF------RDSID 491 (534)
T ss_dssp HHHHHHHHHHSCSSC---EEEEETTEEEEEECSSSC-HHHHHHHHHHHHHHTTCCCTTCEEECSSCCCS------THHHH
T ss_pred HHHHHHHHHhcCCce---EEEEeCCeEEEECCCCcc-hHHHHHHHHHHHHhhccCCCCeEEEeccccCC------CccHH
Confidence 4556666 3445554 356789999999887753 458888899999655556677776432 2355 47777
Q ss_pred HHHHcCCCEEE
Q psy8195 83 ALIKSGIKKVI 93 (192)
Q Consensus 83 ai~~~gI~rvv 93 (192)
....+||+-|+
T Consensus 492 ~Aa~aGV~aIi 502 (534)
T 4ehi_A 492 EASKVGVKAIV 502 (534)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHHcCCEEEE
Confidence 77788877654
No 39
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=38.47 E-value=73 Score=23.57 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=29.2
Q ss_pred EEEEEEeCCeEEEEeecCCCCC-ccHHHHHHHHHHhcCCCCCCeEEEEeC
Q psy8195 20 VGCVIVKEKRIISCGYTKSPGG-NHAEIDALLNAAAQGYDVYNSTVYITL 68 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~~~~~-~HAE~~ai~~a~~~~~~~~~~tlYvTl 68 (192)
.|+||+.+|+++..+......+ ..||..|+..+.+.- .....++|+--
T Consensus 41 ~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~~~~v~I~tDS 89 (165)
T 3p1g_A 41 AGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-EGKKLNVYTDS 89 (165)
T ss_dssp EEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-BTSEEEEEECC
T ss_pred EEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-cCceEEEEEch
Confidence 5777777777664443322223 589999999987653 23445555543
No 40
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=37.81 E-value=90 Score=22.03 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=36.3
Q ss_pred hhHHHHHHcCCCEEEEEeeCCCCC-CcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 79 PCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 79 ~C~~ai~~~gI~rvv~~~~dp~~~-~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
-=...++..++.-|++|.-..... ..-.-.+.|++.||.|+.-.-...|+..|
T Consensus 52 ~~l~~ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A~rtyN 105 (122)
T 2ab1_A 52 ADVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYN 105 (122)
T ss_dssp HHHHHHHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 344455555678899998876553 55556788999999998744455666544
No 41
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=37.12 E-value=1.8e+02 Score=26.03 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=54.9
Q ss_pred HHHHHhhc-ccCCCCCeEEEEEEeCCeEEEEeecCCCCCccHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCChhhH
Q psy8195 4 ALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCT 81 (192)
Q Consensus 4 Ai~~A~~~-~~~~~~p~vGaviv~~g~ii~~g~n~~~~~~HAE~~ai~~a~~~~~~~~~~tlYvT-lEPC~~~g~tp~C~ 81 (192)
.+..|++. ..+..|- -|+++||+.|+.|.-+.. ..|+-..|+.+| +..++|+.|=.- .-|= +-|.
T Consensus 413 dL~fAw~v~K~vkSNA---Iv~akdg~tvGiGaGQ~s-RV~s~r~A~~kA---g~~~~G~vlaSDAFFPF------~D~v 479 (523)
T 3zzm_A 413 DLVFAWRACRAVKSNA---IVIAADGATVGVGMGQVN-RVDAARLAVERG---GERVRGAVAASDAFFPF------PDGL 479 (523)
T ss_dssp HHHHHHHHGGGSCSSC---EEEEETTEEEEEECSCSS-HHHHHHHHHHHH---GGGCTTCEEEESSCCSS------HHHH
T ss_pred HHHHHHHHHHhccCce---EEEEECCeEEEECCCCcc-hHHHHHHHHHHh---ccccCCeEEEeccCcCC------CccH
Confidence 35567776 4455555 367789999999887653 448888899998 666778777542 4565 5788
Q ss_pred HHHHHcCCCEEE
Q psy8195 82 EALIKSGIKKVI 93 (192)
Q Consensus 82 ~ai~~~gI~rvv 93 (192)
.....+||+-|+
T Consensus 480 e~aa~aGv~aIi 491 (523)
T 3zzm_A 480 ETLAAAGVTAVV 491 (523)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHHcCCEEEE
Confidence 888888888665
No 42
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=36.87 E-value=1.3e+02 Score=22.75 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=33.5
Q ss_pred EEEEEEeCCeEEEEeecCCCCC-----ccHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCChhhHHHHHH
Q psy8195 20 VGCVIVKEKRIISCGYTKSPGG-----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIK 86 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~~~~~-----~HAE~~ai~~a~~~~~~~~~~tlYvTlEPC~~~g~tp~C~~ai~~ 86 (192)
.--|| ++|+|+..-....... .|+|.. ++...........-++|++ .-| |.|..+..+
T Consensus 127 ~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~i-l~~l~~~~i~~~~i~ly~~-~~C------p~C~~a~~~ 189 (241)
T 1nm3_A 127 YSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTM-LKYLAPQHQVQESISIFTK-PGC------PFCAKAKQL 189 (241)
T ss_dssp EEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHH-HHHHCTTSCCCCCEEEEEC-SSC------HHHHHHHHH
T ss_pred EEEEE-ECCEEEEEEEeccCCCccceecCHHHH-HHHhhhhccccceEEEEEC-CCC------hHHHHHHHH
Confidence 44455 9999998766543321 566532 3333211122345677765 689 799987654
No 43
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=35.11 E-value=40 Score=30.14 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=33.4
Q ss_pred CceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhh------------cCeEEEccC
Q psy8195 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR------------SCAILTGKN 191 (192)
Q Consensus 142 rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~------------~daIlvG~~ 191 (192)
.+-+++-+|+|+||.| .++|.--|..-++..++.-.+-.. .|+||.|.+
T Consensus 12 MrkI~livA~SldG~I-G~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRK 72 (515)
T 3nrr_A 12 CGDLTIFVAVALNKVI-GHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRK 72 (515)
T ss_dssp CCCEEEEEEECTTSEE-EBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHH
T ss_pred CceEEEEEEECCCCcC-CCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcch
Confidence 3447889999999999 567777787444444444444332 489999853
No 44
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=32.59 E-value=73 Score=22.87 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=38.2
Q ss_pred hhhHHHHHHcCCCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 78 PPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 78 p~C~~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
+--...++..++.-|++|.-.......-.-.+.|++.||.|..-.-...|+..|
T Consensus 54 ~e~l~~ll~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~aAcrTyN 107 (132)
T 2gm2_A 54 PAHMDAVLALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNAAAARTYN 107 (132)
T ss_dssp TTTSHHHHHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 344566777789999999877655455556678999999998744455666544
No 45
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=30.59 E-value=27 Score=27.45 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=22.7
Q ss_pred EEEEEEeCCeEEEEeecCC----------CCCccHHHHHHHH
Q psy8195 20 VGCVIVKEKRIISCGYTKS----------PGGNHAEIDALLN 51 (192)
Q Consensus 20 vGaviv~~g~ii~~g~n~~----------~~~~HAE~~ai~~ 51 (192)
=||||+++|+|++.|..-. .|+.|--...|.+
T Consensus 135 DGAvII~~~rI~aA~~~LPls~~~~i~~~lGTRHRAA~GISe 176 (205)
T 2fb5_A 135 DGAVLVKNNHIVSAANILPLTKSTEVDPELGTRHRAAIGLSE 176 (205)
T ss_dssp SSEEEEETTEEEEEEEBCCCCCCTTSCTTCCHHHHHHHHHHT
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCcCccccHHHHHHHHHHH
Confidence 4999999999999876541 2678874444443
No 46
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=28.86 E-value=95 Score=24.57 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=37.4
Q ss_pred CeEEEEeCCCCCC-CCCC-----hhhH--HHHHHcCCCEEEEEeeCCCCCCcchhHHhhhh--CCCeeee
Q psy8195 61 NSTVYITLEPCSY-FGYT-----PPCT--EALIKSGIKKVIIAINDPNPLVSGKGVAQLIS--AGISVKQ 120 (192)
Q Consensus 61 ~~tlYvTlEPC~~-~g~t-----p~C~--~ai~~~gI~rvv~~~~dp~~~~~g~g~~~l~~--~gi~v~~ 120 (192)
+-.+|+-..|=.. |--+ -|+. ..+...|..-||||..+++....-.-.+.|.+ .|.+|+.
T Consensus 54 ~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTF 123 (224)
T 2bdq_A 54 GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVF 123 (224)
T ss_dssp TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 4678888888321 1111 2433 36777999999999999987654434444432 3666664
No 47
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=27.33 E-value=77 Score=25.22 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=31.8
Q ss_pred CceeeeeecccCCCccccCCCCccccCCHHHHHHHHHHHhhc------------CeEEEcc
Q psy8195 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARS------------CAILTGK 190 (192)
Q Consensus 142 rP~v~~K~A~SlDG~ia~~~g~s~~it~~~sr~~~h~lR~~~------------daIlvG~ 190 (192)
.+-+++-+|+|.||.|. .+|.-=|- -++..++.-++=..+ ++||.|.
T Consensus 26 mr~i~lIvA~s~ng~IG-~~g~LPW~-lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGR 84 (240)
T 3rg9_A 26 LRPFSVVVASDEKGGIG-DGGTIPWE-IPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGR 84 (240)
T ss_dssp CCCEEEEEEEETTCEEE-SSSSCSCC-CHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEH
T ss_pred CCeEEEEEEECCCCcEE-CCCCcCCC-CHHHHHHHHHHHcCCcccccccccccCcEEEEeh
Confidence 44588999999999997 56665675 334444444444443 7899885
No 48
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=27.18 E-value=1.4e+02 Score=21.08 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=38.0
Q ss_pred hhhHHHHHHcC--CCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 78 PPCTEALIKSG--IKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 78 p~C~~ai~~~g--I~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
+-=...+.... +.-|++|.-.......-.-.+.|++.||.|..-.-...|+..|
T Consensus 56 ~~~l~~l~~~~p~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~aAcrtyN 111 (128)
T 2fi9_A 56 QEDISRVLEESDQIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTGAAVRTFN 111 (128)
T ss_dssp TGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 44556666666 8889999887654555556688999999998744456666544
No 49
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=26.91 E-value=32 Score=17.51 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.1
Q ss_pred CCCCCCCCCChhhH
Q psy8195 68 LEPCSYFGYTPPCT 81 (192)
Q Consensus 68 lEPC~~~g~tp~C~ 81 (192)
.-||...|+.|.|-
T Consensus 11 chpc~c~~rp~yc~ 24 (26)
T 1p1p_A 11 CHPCSCKDRPSYCG 24 (26)
T ss_dssp CCTTTSTTCCGGGC
T ss_pred ccccccCCCCCccC
Confidence 46998888888873
No 50
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=26.75 E-value=41 Score=23.49 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=23.7
Q ss_pred eEEEEEEeCCeEEEEeecCC----C-----CCccHHHHHHHHHHhc
Q psy8195 19 RVGCVIVKEKRIISCGYTKS----P-----GGNHAEIDALLNAAAQ 55 (192)
Q Consensus 19 ~vGaviv~~g~ii~~g~n~~----~-----~~~HAE~~ai~~a~~~ 55 (192)
..||||++||+|+-.-.... + +.--.+..|+|++.+.
T Consensus 6 aag~vv~~~~~vLL~~r~~g~W~~PgG~ve~gEt~~~aa~RE~~EE 51 (134)
T 3i7u_A 6 SAGGVLFKDGEVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEE 51 (134)
T ss_dssp EEEEEEEETTEEEEEECTTSCEECCEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEEECCEEEEEEeCCCcEECCeeEecCCCCHHHHHHHHHHHh
Confidence 37899999999886533221 1 2345667788877554
No 51
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=26.15 E-value=1.2e+02 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=20.7
Q ss_pred EEEEEEeCCeEEE-EeecCCCCCccHHHHHHHHHHhc
Q psy8195 20 VGCVIVKEKRIIS-CGYTKSPGGNHAEIDALLNAAAQ 55 (192)
Q Consensus 20 vGaviv~~g~ii~-~g~n~~~~~~HAE~~ai~~a~~~ 55 (192)
+|+|+..+|.+.. .+.-.......||..|+..+.+.
T Consensus 24 ~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~ 60 (158)
T 2e4l_A 24 YGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEA 60 (158)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHH
Confidence 6677766664321 12111122347999999998653
No 52
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=25.66 E-value=95 Score=22.35 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=20.7
Q ss_pred EEEEEEeCCeE-EEEeecCCCCCccHHHHHHHHHHhc
Q psy8195 20 VGCVIVKEKRI-ISCGYTKSPGGNHAEIDALLNAAAQ 55 (192)
Q Consensus 20 vGaviv~~g~i-i~~g~n~~~~~~HAE~~ai~~a~~~ 55 (192)
+|+|+..++.. ...+.-.......||..|+..+.+.
T Consensus 22 ~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~ 58 (155)
T 1jl1_A 22 YGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 (155)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHH
Confidence 57777765532 2222211112347999999998654
No 53
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=25.18 E-value=1.5e+02 Score=21.23 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=36.8
Q ss_pred hhhHHHHHHcC--CCEEEEEeeCCCCCCcchhHHhhhhCCCeeeeccchHHHHhhc
Q psy8195 78 PPCTEALIKSG--IKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (192)
Q Consensus 78 p~C~~ai~~~g--I~rvv~~~~dp~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~ 131 (192)
+-=...+.... +.-|++|.-.......-.-.+.|++.||.|+.-.-...|+..|
T Consensus 55 ~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~aAcrTyN 110 (135)
T 2fvt_A 55 RYSLQRVFDNANAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTGPAIRTYN 110 (135)
T ss_dssp TTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 34455565555 8889999877655555556678999999988744455666544
No 54
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=22.52 E-value=1.2e+02 Score=21.36 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=21.2
Q ss_pred eEEEEEEeCCeEEE-EeecCCCCCccHHHHHHHHHHhc
Q psy8195 19 RVGCVIVKEKRIIS-CGYTKSPGGNHAEIDALLNAAAQ 55 (192)
Q Consensus 19 ~vGaviv~~g~ii~-~g~n~~~~~~HAE~~ai~~a~~~ 55 (192)
.+|+|+..++.... .+.-.......||..|+..+.+.
T Consensus 21 g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~ 58 (146)
T 3h08_A 21 GWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEA 58 (146)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHh
Confidence 36777777554321 12211112347999999999654
Done!