Your job contains 1 sequence.
>psy8195
MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY
NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ
GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR
ARSCAILTGKNI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8195
(192 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|SO_3469 - symbol:SO_3469 "riboflavin biosynthesi... 480 1.0e-45 1
TIGR_CMR|CPS_0730 - symbol:CPS_0730 "riboflavin biosynthe... 452 9.3e-43 1
UNIPROTKB|P25539 - symbol:ribD "fused diaminohydroxyphosp... 441 1.4e-41 1
UNIPROTKB|Q9KPU1 - symbol:VC_2271 "Riboflavin-specific de... 440 1.7e-41 1
TIGR_CMR|VC_2271 - symbol:VC_2271 "riboflavin biosynthesi... 440 1.7e-41 1
TIGR_CMR|DET_1190 - symbol:DET_1190 "riboflavin biosynthe... 434 7.5e-41 1
TIGR_CMR|ECH_0169 - symbol:ECH_0169 "riboflavin biosynthe... 417 4.8e-39 1
TIGR_CMR|BA_4331 - symbol:BA_4331 "riboflavin biosynthesi... 394 1.3e-36 1
TIGR_CMR|CHY_1475 - symbol:CHY_1475 "riboflavin biosynthe... 393 1.7e-36 1
TIGR_CMR|SPO_1754 - symbol:SPO_1754 "riboflavin biosynthe... 389 4.4e-36 1
TIGR_CMR|APH_0037 - symbol:APH_0037 "riboflavin biosynthe... 383 1.9e-35 1
TIGR_CMR|GSU_1688 - symbol:GSU_1688 "riboflavin biosynthe... 379 5.1e-35 1
TIGR_CMR|NSE_0499 - symbol:NSE_0499 "riboflavin biosynthe... 350 6.0e-32 1
TAIR|locus:2133074 - symbol:PyrD "pyrimidine deaminase" s... 313 5.0e-28 1
UNIPROTKB|P71677 - symbol:ribD "Riboflavin biosynthesis p... 309 1.3e-27 1
TIGR_CMR|CBU_0643 - symbol:CBU_0643 "riboflavin biosynthe... 302 7.3e-27 1
UNIPROTKB|Q5HSH0 - symbol:CJE1794 "Riboflavin biosynthesi... 151 8.0e-18 2
TIGR_CMR|CJE_1794 - symbol:CJE_1794 "riboflavin biosynthe... 151 8.0e-18 2
UNIPROTKB|Q0C679 - symbol:HNE_0030 "Riboflavin biosynthes... 191 4.2e-15 1
TAIR|locus:2099555 - symbol:PHS1 "AT3G47390" species:3702... 169 1.0e-11 1
UNIPROTKB|P68398 - symbol:tadA "tRNA-specific adenosine d... 131 9.7e-09 1
UNIPROTKB|Q83DS3 - symbol:CBU_0622 "tRNA-specific adenosi... 131 9.7e-09 1
TIGR_CMR|CBU_0622 - symbol:CBU_0622 "zinc-binding domain ... 131 9.7e-09 1
UNIPROTKB|Q9KTN7 - symbol:VC_0864 "YfhC protein" species:... 130 8.9e-08 1
TIGR_CMR|VC_0864 - symbol:VC_0864 "zinc-binding domain pr... 130 8.9e-08 1
POMBASE|SPCC4G3.16 - symbol:SPCC4G3.16 "CMP deaminase fam... 133 4.4e-07 1
UNIPROTKB|Q81W19 - symbol:BAS0020 "Cytidine/deoxycytidyla... 116 3.1e-06 1
TIGR_CMR|BA_0018 - symbol:BA_0018 "cytidine/deoxycytidyla... 116 3.1e-06 1
UNIPROTKB|Q60C22 - symbol:yfhC "Zinc-binding domain prote... 107 4.7e-06 1
UNIPROTKB|Q47XY3 - symbol:CPS_3669 "Cytidine/deoxycytidyl... 118 4.9e-06 1
TIGR_CMR|CPS_3669 - symbol:CPS_3669 "cytidine/deoxycytidy... 118 4.9e-06 1
UNIPROTKB|Q8EC53 - symbol:tadA "tRNA-specific adenosine d... 109 2.5e-05 1
TIGR_CMR|SO_3291 - symbol:SO_3291 "cytidine/deoxycytidyla... 109 2.5e-05 1
UNIPROTKB|Q886W8 - symbol:PSPTO_1457 "Cytidine/deoxycytid... 110 3.9e-05 1
UNIPROTKB|Q74H28 - symbol:tadA "tRNA (Adenosine-34) deami... 111 4.4e-05 1
TIGR_CMR|GSU_0065 - symbol:GSU_0065 "cytidine/deoxycytidy... 111 4.4e-05 1
TIGR_CMR|CHY_2556 - symbol:CHY_2556 "putative comE operon... 109 6.0e-05 1
UNIPROTKB|Q4K6X5 - symbol:tadA "tRNA-specific adenosine d... 106 0.00011 1
CGD|CAL0004621 - symbol:orf19.1458 species:5476 "Candida ... 113 0.00011 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 114 0.00030 1
TIGR_CMR|CHY_2682 - symbol:CHY_2682 "cytidine/deoxycytidy... 101 0.00039 1
UNIPROTKB|Q0C0I7 - symbol:HNE_2058 "Riboflavin biosynthes... 105 0.00060 1
UNIPROTKB|Q97TC0 - symbol:SP_0020 "Cytidine/deoxycytidyla... 99 0.00081 1
>TIGR_CMR|SO_3469 [details] [associations]
symbol:SO_3469 "riboflavin biosynthesis protein RibD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835
GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 HSSP:Q12178 RefSeq:NP_719018.1
ProteinModelPortal:Q8EBP0 GeneID:1171145 KEGG:son:SO_3469
PATRIC:23526634 OMA:PDYQTMA ProtClustDB:CLSK907182 Uniprot:Q8EBP0
Length = 381
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 93/190 (48%), Positives = 127/190 (66%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ ++ PNP VGCVIV + +I+ GY + G HAE+ AL A G
Sbjct: 11 MSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVD 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 128 VGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 187
Query: 180 RARSCAILTG 189
R RSCA++TG
Sbjct: 188 RLRSCALITG 197
>TIGR_CMR|CPS_0730 [details] [associations]
symbol:CPS_0730 "riboflavin biosynthesis protein RibD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442
KO:K11752 OMA:LHVEAGF TIGRFAMs:TIGR00326 RefSeq:YP_267480.1
ProteinModelPortal:Q488N4 STRING:Q488N4 GeneID:3522815
KEGG:cps:CPS_0730 PATRIC:21464775
BioCyc:CPSY167879:GI48-817-MONOMER Uniprot:Q488N4
Length = 389
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 90/195 (46%), Positives = 130/195 (66%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK----RIISCGYTKSPGGNHAEIDALLNAAAQ 55
M+ A+ AK +SPNPRVGCV+V K ++I GY + G HAE++AL A
Sbjct: 1 MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60
Query: 56 GYD-VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ +T Y+TLEPCS+FG TPPC +AL+ +G+ VI A+ DPNP VSG G++ L A
Sbjct: 61 NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120
Query: 115 GISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRN 174
GI+V+ GL+++ A +N+GF +M +P+VR K+A+SLD KT++ + S+WITS ++R
Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180
Query: 175 DSHIWRARSCAILTG 189
D RA+SCAI+TG
Sbjct: 181 DVQRLRAQSCAIITG 195
>UNIPROTKB|P25539 [details] [associations]
symbol:ribD "fused
diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase" species:83333
"Escherichia coli K-12" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050661 "NADP binding" evidence=IEA;IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA;IDA] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA;IDA] [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=IEA;IDA] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 UniPathway:UPA00275 InterPro:IPR024072 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0050661 GO:GO:0008270 SUPFAM:SSF53927
EMBL:U82664 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
EMBL:X64395 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
TIGRFAMs:TIGR00227 PIR:S26201 RefSeq:NP_414948.1 RefSeq:YP_488706.1
PDB:2G6V PDB:2O7P PDB:2OBC PDBsum:2G6V PDBsum:2O7P PDBsum:2OBC
ProteinModelPortal:P25539 SMR:P25539 DIP:DIP-10708N IntAct:P25539
MINT:MINT-1221612 PRIDE:P25539 EnsemblBacteria:EBESCT00000003732
EnsemblBacteria:EBESCT00000017165 GeneID:12934255 GeneID:945620
KEGG:ecj:Y75_p0402 KEGG:eco:b0414 PATRIC:32115977 EchoBASE:EB1297
EcoGene:EG11321 HOGENOM:HOG000257442 KO:K11752 OMA:LHVEAGF
ProtClustDB:PRK10786 BioCyc:EcoCyc:RIBOFLAVINSYNDEAM-MONOMER
BioCyc:ECOL316407:JW0404-MONOMER
BioCyc:MetaCyc:RIBOFLAVINSYNDEAM-MONOMER EvolutionaryTrace:P25539
Genevestigator:P25539 TIGRFAMs:TIGR00326 Uniprot:P25539
Length = 367
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 87/189 (46%), Positives = 125/189 (66%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILT 188
RA+S AILT
Sbjct: 184 RAQSHAILT 192
>UNIPROTKB|Q9KPU1 [details] [associations]
symbol:VC_2271 "Riboflavin-specific deaminase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase
activity" evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 PIR:F82098 RefSeq:NP_231902.1
ProteinModelPortal:Q9KPU1 DNASU:2613193 GeneID:2613193
KEGG:vch:VC2271 PATRIC:20083583 ProtClustDB:CLSK874739
Uniprot:Q9KPU1
Length = 367
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 89/189 (47%), Positives = 128/189 (67%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ A + +SPNP VGCVI + ++I+ G+ G HAE+ A+ A G
Sbjct: 12 MSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELT 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+
Sbjct: 69 RGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +
Sbjct: 129 VGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRF 188
Query: 180 RARSCAILT 188
RA++ AIL+
Sbjct: 189 RAQASAILS 197
>TIGR_CMR|VC_2271 [details] [associations]
symbol:VC_2271 "riboflavin biosynthesis protein RibD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 PIR:F82098 RefSeq:NP_231902.1
ProteinModelPortal:Q9KPU1 DNASU:2613193 GeneID:2613193
KEGG:vch:VC2271 PATRIC:20083583 ProtClustDB:CLSK874739
Uniprot:Q9KPU1
Length = 367
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 89/189 (47%), Positives = 128/189 (67%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ A + +SPNP VGCVI + ++I+ G+ G HAE+ A+ A G
Sbjct: 12 MSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELT 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+
Sbjct: 69 RGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +
Sbjct: 129 VGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRF 188
Query: 180 RARSCAILT 188
RA++ AIL+
Sbjct: 189 RAQASAILS 197
>TIGR_CMR|DET_1190 [details] [associations]
symbol:DET_1190 "riboflavin biosynthesis protein RibD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_181903.1 ProteinModelPortal:Q3Z796 STRING:Q3Z796
GeneID:3229533 KEGG:det:DET1190 PATRIC:21609415
ProtClustDB:CLSK837091 BioCyc:DETH243164:GJNF-1191-MONOMER
Uniprot:Q3Z796
Length = 365
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 93/192 (48%), Positives = 125/192 (65%)
Query: 1 MTLALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL AKL+I SPNP VG VIVK ++ G+T+ PGG+HAEI AL AA +
Sbjct: 4 MSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK-- 61
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPC + G TPPCT A+I+SGIK+V IA D NPLVSGKG +L AGI V
Sbjct: 62 -GAALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVH 120
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M++EA ++N +F + G+P+V K A SLD KT S+WI+++ESR+ +H
Sbjct: 121 LGMMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYI 180
Query: 180 RARSCAILTGKN 191
R S I+ G N
Sbjct: 181 RHISDVIMAGLN 192
>TIGR_CMR|ECH_0169 [details] [associations]
symbol:ECH_0169 "riboflavin biosynthesis protein RibD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_506994.1 ProteinModelPortal:Q2GHT9 STRING:Q2GHT9
GeneID:3927940 KEGG:ech:ECH_0169 PATRIC:20575879 OMA:RWITNEL
ProtClustDB:CLSK749535 BioCyc:ECHA205920:GJNR-169-MONOMER
Uniprot:Q2GHT9
Length = 360
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 87/192 (45%), Positives = 127/192 (66%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+LAL+ A+ + N PNP VGC++V ++ GYT+ G HAE+ AL NA G+
Sbjct: 9 MSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNA---GHLA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
STVY+TLEPCS++G T PC LI +G+K+++IA DP+ VSG G+ L +AGI VK
Sbjct: 66 KGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDVK 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +EA E+NIGFF + P++ +K+AS+LD K +L + +S+WIT++ +RN H
Sbjct: 126 CGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRNWVHKQ 185
Query: 180 RARSCAILTGKN 191
R+ AI+ G N
Sbjct: 186 RSMYDAIMVGSN 197
>TIGR_CMR|BA_4331 [details] [associations]
symbol:BA_4331 "riboflavin biosynthesis protein RibD"
species:198094 "Bacillus anthracis str. Ames" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752
OMA:LHVEAGF TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:NP_846564.1 RefSeq:YP_020977.1 RefSeq:YP_030268.1
ProteinModelPortal:Q81MB8 SMR:Q81MB8 IntAct:Q81MB8 DNASU:1087530
EnsemblBacteria:EBBACT00000009552 EnsemblBacteria:EBBACT00000014359
EnsemblBacteria:EBBACT00000024446 GeneID:1087530 GeneID:2815149
GeneID:2850342 KEGG:ban:BA_4331 KEGG:bar:GBAA_4331 KEGG:bat:BAS4018
ProtClustDB:CLSK873057 BioCyc:BANT260799:GJAJ-4075-MONOMER
BioCyc:BANT261594:GJ7F-4215-MONOMER Uniprot:Q81MB8
Length = 370
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 89/192 (46%), Positives = 117/192 (60%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +ALQ A+ + +SPNP VG V+VK+ I+ G G HAE+ AL A G
Sbjct: 7 MRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC E LIK +K+V+IA D NPLVSG G +L AGI V
Sbjct: 64 KGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEVT 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N FF M+ P+V +K A SLD KT+ S+WIT +++R D H +
Sbjct: 124 TGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQY 183
Query: 180 RARSCAILTGKN 191
R AIL G N
Sbjct: 184 RHTHDAILVGVN 195
>TIGR_CMR|CHY_1475 [details] [associations]
symbol:CHY_1475 "riboflavin biosynthesis protein RibD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase
activity" evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_360307.1 ProteinModelPortal:Q3AC27 STRING:Q3AC27
GeneID:3726293 KEGG:chy:CHY_1475 PATRIC:21276081 OMA:WYGRNPV
BioCyc:CHYD246194:GJCN-1474-MONOMER Uniprot:Q3AC27
Length = 361
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 83/191 (43%), Positives = 124/191 (64%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIV-KEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M AL+ AK ++ +SPNP VG VIV K+ I+ GY K G HAE +AL A G
Sbjct: 7 MKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVA---GEK 63
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
T+Y+TLEPC ++G TPPCT+A+I +GIKKV++A+ DPNP VSGKG+ L +AGI V
Sbjct: 64 ARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIEV 123
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+G++ +EA+ +N FF ++ G+P++ +K A ++D K + S+W++ ++SR+ H
Sbjct: 124 VEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVHR 183
Query: 179 WRARSCAILTG 189
R A+L G
Sbjct: 184 LRNEYDAVLVG 194
>TIGR_CMR|SPO_1754 [details] [associations]
symbol:SPO_1754 "riboflavin biosynthesis protein RibD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597
GO:GO:0008835 GO:GO:0008703 TIGRFAMs:TIGR00227 HOGENOM:HOG000257442
KO:K11752 OMA:LHVEAGF TIGRFAMs:TIGR00326 RefSeq:YP_166992.1
ProteinModelPortal:Q5LSL3 GeneID:3193058 KEGG:sil:SPO1754
PATRIC:23376831 ProtClustDB:CLSK2767255 Uniprot:Q5LSL3
Length = 364
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 84/177 (47%), Positives = 110/177 (62%)
Query: 16 PNPRVGCVIVKEKRIISCGYTKSPGGN-HAEIDALLNA--AAQGYDVYNSTVYITLEPCS 72
PNP VGCVIV E RI+ G+T+ PGG HAE+ AL A AA+G +T Y+TLEPC+
Sbjct: 25 PNPAVGCVIVNEGRIVGRGWTQ-PGGRPHAEVVALAQAGGAARG-----ATAYVTLEPCA 78
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC EALI +G+ +V+ AI D +P V+G G L AGI V G+ + A
Sbjct: 79 HHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRAGIEVSVGIGEDAAARDLA 138
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
GFF + + G PWV +K+ASS D + + + SQWIT E+R H RAR A+L G
Sbjct: 139 GFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEARRAVHAMRARHDAVLVG 195
>TIGR_CMR|APH_0037 [details] [associations]
symbol:APH_0037 "riboflavin biosynthesis protein RibD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 OMA:RWITNEL
ProtClustDB:CLSK749535 RefSeq:YP_504671.1 ProteinModelPortal:Q2GLT0
STRING:Q2GLT0 GeneID:3930894 KEGG:aph:APH_0037 PATRIC:20948608
BioCyc:APHA212042:GHPM-76-MONOMER Uniprot:Q2GLT0
Length = 364
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 82/192 (42%), Positives = 117/192 (60%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL A+ + N PNP VGCV++++ ++ G+T + G HAEI AL NA G
Sbjct: 8 MAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNA---GNRA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPC + G T PCT ALI +G+ +V+I + DP+ VSGKG++ L +AGI VK
Sbjct: 65 IGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEVK 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++Q++A +N GFF P + K+A++LD K S +WIT+ +R H
Sbjct: 125 YGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKISFDEGCDRWITNDLTRKWVHKQ 184
Query: 180 RARSCAILTGKN 191
RA AIL G N
Sbjct: 185 RAMYDAILVGSN 196
>TIGR_CMR|GSU_1688 [details] [associations]
symbol:GSU_1688 "riboflavin biosynthesis protein RibD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 InterPro:IPR024072 GO:GO:0050661 GO:GO:0008270
SUPFAM:SSF53927 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835
GO:GO:0008703 TIGRFAMs:TIGR00227 KO:K11752 OMA:LHVEAGF
TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 RefSeq:NP_952739.1
ProteinModelPortal:Q74CI5 GeneID:2685605 KEGG:gsu:GSU1688
PATRIC:22026225 ProtClustDB:CLSK828486
BioCyc:GSUL243231:GH27-1709-MONOMER Uniprot:Q74CI5
Length = 369
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 82/192 (42%), Positives = 117/192 (60%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL A+ I +SPNP VGCVIV+E ++ G+ + G HAE+ AL A A+G
Sbjct: 9 MRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALREAGPLARGA 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
DVY +TLEPCS+FG TPPC +AL+ +G+ +V + + DPNP V GKG+ +L + GI
Sbjct: 69 DVY-----VTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAVGIQ 123
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V G++ KE IN F + G+P++ +K A +LD KT+ S+WIT+ +SR H
Sbjct: 124 VITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRRYVH 183
Query: 178 IWRARSCAILTG 189
RA A++ G
Sbjct: 184 QLRAEVDAVMVG 195
>TIGR_CMR|NSE_0499 [details] [associations]
symbol:NSE_0499 "riboflavin biosynthesis protein RibD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 GO:GO:0008703
KO:K11752 TIGRFAMs:TIGR00326 HOGENOM:HOG000257443
RefSeq:YP_506383.1 ProteinModelPortal:Q2GDR3 STRING:Q2GDR3
GeneID:3932118 KEGG:nse:NSE_0499 PATRIC:22681047 OMA:PPCADRI
ProtClustDB:CLSK2527729 BioCyc:NSEN222891:GHFU-519-MONOMER
Uniprot:Q2GDR3
Length = 372
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 71/174 (40%), Positives = 105/174 (60%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++ NP VGC+IVK+ ++ G T G HAE AL A G + +Y TLEPC++
Sbjct: 28 TADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVA---GIKARGADLYTTLEPCAH 84
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
G T PCT+ +I+SGIK V I DP+ V+GKG+ +L +GI V G++++E NIG
Sbjct: 85 HGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQKLQESGIVVTTGILKRECCVSNIG 144
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+F R G P+V +K A++LD K + +N S WITS R +H+ R S +++
Sbjct: 145 YFYRQVLGKPFVILKTATTLDGKIACFNGKSAWITSPAMRRTAHMLRRMSSSVM 198
>TAIR|locus:2133074 [details] [associations]
symbol:PyrD "pyrimidine deaminase" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=IEA;IGI] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA;IDA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009570 "chloroplast stroma" evidence=IDA]
InterPro:IPR002125 InterPro:IPR004794 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 InterPro:IPR024072
GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0055114 GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835 KO:K11752
TIGRFAMs:TIGR00326 EMBL:BT006051 EMBL:AK118717 IPI:IPI00537120
RefSeq:NP_567618.1 UniGene:At.32681 HSSP:Q12178
ProteinModelPortal:Q8GWP5 SMR:Q8GWP5 STRING:Q8GWP5 PaxDb:Q8GWP5
PRIDE:Q8GWP5 EnsemblPlants:AT4G20960.1 GeneID:827843
KEGG:ath:AT4G20960 TAIR:At4g20960 HOGENOM:HOG000257443
InParanoid:Q8GWP5 OMA:IGCTSPN PhylomeDB:Q8GWP5 ProtClustDB:PLN02807
BioCyc:MetaCyc:AT4G20960-MONOMER Genevestigator:Q8GWP5
Uniprot:Q8GWP5
Length = 426
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 64/155 (41%), Positives = 101/155 (65%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ++ AK +I +SPNP VGCVIVK+ I+ G+ G HAE+ AL +A G
Sbjct: 78 MRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDA---GELA 134
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
N+T Y++LEPC+++G TPPCTEALIK+ +++V+I + DPNP+V G+++L AGI V
Sbjct: 135 ENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDVT 194
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
+ ++ ++N GF RM G P++ ++ + S++
Sbjct: 195 VSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVN 229
>UNIPROTKB|P71677 [details] [associations]
symbol:ribD "Riboflavin biosynthesis protein RibD"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002125
InterPro:IPR002734 InterPro:IPR004794 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769
PROSITE:PS00903 UniPathway:UPA00275 InterPro:IPR024072
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
EMBL:BX842576 GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0009231
Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117 GO:GO:0008835
GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752 TIGRFAMs:TIGR00326
PIR:F70901 RefSeq:NP_215925.1 RefSeq:NP_335904.1
RefSeq:YP_006514789.1 ProteinModelPortal:P71677 SMR:P71677
PRIDE:P71677 EnsemblBacteria:EBMYCT00000000165
EnsemblBacteria:EBMYCT00000069653 GeneID:13319998 GeneID:886721
GeneID:924519 KEGG:mtc:MT1453 KEGG:mtu:Rv1409 KEGG:mtv:RVBD_1409
PATRIC:18124964 TubercuList:Rv1409 OMA:MAFNNLK
ProtClustDB:CLSK791144 Uniprot:P71677
Length = 339
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 72/192 (37%), Positives = 115/192 (59%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ + ++ + P P VG VIV RI+ G T+ GG+HAE+ AL A G
Sbjct: 13 MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA---GGL 69
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+ V +T+EPC+++G TPPC ALI++ + V+ A+ DPN + G G +L +AG+ V
Sbjct: 70 AAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPNGIAGG-GAGRLSAAGLQV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQR-GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
+ G++ ++ + + QR G+P V K A+S+D +++ + SSQWI+S+ +R D H
Sbjct: 129 RSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLH 188
Query: 178 IWRARSCAILTG 189
RA + AIL G
Sbjct: 189 RRRAIADAILVG 200
>TIGR_CMR|CBU_0643 [details] [associations]
symbol:CBU_0643 "riboflavin biosynthesis protein RibD"
species:227377 "Coxiella burnetii RSA 493" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 PIRSF:PIRSF006769 PROSITE:PS00903
InterPro:IPR024072 GO:GO:0008270 SUPFAM:SSF53927 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009231 Gene3D:3.40.430.10
SUPFAM:SSF53597 GO:GO:0008835 GO:GO:0008703 KO:K11752 OMA:LHVEAGF
TIGRFAMs:TIGR00326 HOGENOM:HOG000257443 RefSeq:NP_819673.1
ProteinModelPortal:Q83DQ3 PRIDE:Q83DQ3 GeneID:1208528
KEGG:cbu:CBU_0643 PATRIC:17929965 ProtClustDB:CLSK914208
BioCyc:CBUR227377:GJ7S-640-MONOMER Uniprot:Q83DQ3
Length = 354
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 70/178 (39%), Positives = 104/178 (58%)
Query: 15 SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYF 74
+PNP VG V+VK+ +IIS G+ K G HAE++A+ + G + +Y+TLEPC +F
Sbjct: 24 APNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAIKSL---GDKARGAALYVTLEPCCHF 80
Query: 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ-GLMQKEAYEINIG 133
G TPPCT+ +I+SGIK V ++DPN V GKG+ QL AG++ L + A+ +
Sbjct: 81 GKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQRAGVNCFLIELPEINAFYESYR 140
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN 191
++ + +R PWV K+A SLD K +T + R +H R +S A+LT N
Sbjct: 141 YWIKHKR--PWVTAKLALSLDGKIVGNEGKPVRLTGEGLRQYTHERRKKSDALLTTIN 196
>UNIPROTKB|Q5HSH0 [details] [associations]
symbol:CJE1794 "Riboflavin biosynthesis protein RibD,
putative" species:195099 "Campylobacter jejuni RM1221" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR004794
InterPro:IPR016193 Pfam:PF00383 InterPro:IPR024072 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 RefSeq:YP_179765.1 ProteinModelPortal:Q5HSH0
STRING:Q5HSH0 GeneID:3232421 KEGG:cjr:CJE1794 PATRIC:20045408
OMA:ENPSVAC ProtClustDB:CLSK879337
BioCyc:CJEJ195099:GJC0-1828-MONOMER Uniprot:Q5HSH0
Length = 326
Score = 151 (58.2 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 41/139 (29%), Positives = 76/139 (54%)
Query: 45 EIDALLNAAAQGYD-VYNSTV-YITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL 102
E++AL + + V+ ++ ++TLEPCS+ G TPPC + + G KK+ I++ D N +
Sbjct: 72 EVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKI 131
Query: 103 VSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNN 162
SG G L GI V+ ++++E ++ + F + Q+G + K+A S++
Sbjct: 132 ASG-GAEFLKKQGIEVEFDILKEEGKKL-LKPFLKWQKG-QFKLFKLALSMNGSPF---- 184
Query: 163 SSQWITSKESRNDSHIWRA 181
+ +++K SR +H RA
Sbjct: 185 -GKIVSNKLSRTYAHKIRA 202
Score = 90 (36.7 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIV-KEKRIISCGYTKSPGGNHAEIDALLNA 52
M LAL +A K + PNP VGCVI+ K ++I++ + G HAE++A+ +A
Sbjct: 6 MNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHA 59
>TIGR_CMR|CJE_1794 [details] [associations]
symbol:CJE_1794 "riboflavin biosynthesis protein RibD"
species:195099 "Campylobacter jejuni RM1221" [GO:0008703
"5-amino-6-(5-phosphoribosylamino)uracil reductase activity"
evidence=ISS] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] InterPro:IPR002125 InterPro:IPR004794
InterPro:IPR016193 Pfam:PF00383 InterPro:IPR024072 GO:GO:0008270
SUPFAM:SSF53927 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0009231 Gene3D:3.40.430.10 SUPFAM:SSF53597 eggNOG:COG0117
GO:GO:0008835 GO:GO:0008703 HOGENOM:HOG000257442 KO:K11752
TIGRFAMs:TIGR00326 RefSeq:YP_179765.1 ProteinModelPortal:Q5HSH0
STRING:Q5HSH0 GeneID:3232421 KEGG:cjr:CJE1794 PATRIC:20045408
OMA:ENPSVAC ProtClustDB:CLSK879337
BioCyc:CJEJ195099:GJC0-1828-MONOMER Uniprot:Q5HSH0
Length = 326
Score = 151 (58.2 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 41/139 (29%), Positives = 76/139 (54%)
Query: 45 EIDALLNAAAQGYD-VYNSTV-YITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL 102
E++AL + + V+ ++ ++TLEPCS+ G TPPC + + G KK+ I++ D N +
Sbjct: 72 EVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKI 131
Query: 103 VSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNN 162
SG G L GI V+ ++++E ++ + F + Q+G + K+A S++
Sbjct: 132 ASG-GAEFLKKQGIEVEFDILKEEGKKL-LKPFLKWQKG-QFKLFKLALSMNGSPF---- 184
Query: 163 SSQWITSKESRNDSHIWRA 181
+ +++K SR +H RA
Sbjct: 185 -GKIVSNKLSRTYAHKIRA 202
Score = 90 (36.7 bits), Expect = 8.0e-18, Sum P(2) = 8.0e-18
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIV-KEKRIISCGYTKSPGGNHAEIDALLNA 52
M LAL +A K + PNP VGCVI+ K ++I++ + G HAE++A+ +A
Sbjct: 6 MNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHA 59
>UNIPROTKB|Q0C679 [details] [associations]
symbol:HNE_0030 "Riboflavin biosynthesis protein RibD
N-terminal domain protein" species:228405 "Hyphomonas neptunium
ATCC 15444" [GO:0003674 "molecular_function" evidence=ND]
[GO:0009231 "riboflavin biosynthetic process" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0016787 GO:GO:0009231 EMBL:CP000158
GenomeReviews:CP000158_GR HOGENOM:HOG000085050 eggNOG:COG0117
RefSeq:YP_758764.1 ProteinModelPortal:Q0C679 STRING:Q0C679
GeneID:4289604 KEGG:hne:HNE_0030 PATRIC:32212844 OMA:MVRISAD
ProtClustDB:CLSK2317020 BioCyc:HNEP228405:GI69-77-MONOMER
Uniprot:Q0C679
Length = 152
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 51/139 (36%), Positives = 74/139 (53%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M A Q A+L+ + NP VGC+I+ + I G T + G HAE AL AA +
Sbjct: 13 MGRAFQLARLNHGLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAA- 71
Query: 59 VYNSTVYITLEPC-SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
T Y+TLEPC P C L+++GI +V++AI DP+P + G+A L AG+
Sbjct: 72 --GGTAYVTLEPCRERSSGAPSCARKLVEAGIARVVVAIEDPHP-TARDGLAILREAGVR 128
Query: 118 VKQGLMQKEAYEINIGFFS 136
V+ GL + A + FF+
Sbjct: 129 VETGLGKYTAARLYRAFFA 147
>TAIR|locus:2099555 [details] [associations]
symbol:PHS1 "AT3G47390" species:3702 "Arabidopsis
thaliana" [GO:0008270 "zinc ion binding" evidence=ISS] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil
reductase activity" evidence=IDA;NAS] [GO:0009644 "response to high
light intensity" evidence=IMP] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0046443 "FAD metabolic process"
evidence=IMP] InterPro:IPR002125 InterPro:IPR002734
InterPro:IPR004794 InterPro:IPR011549 InterPro:IPR016193
Pfam:PF00383 Pfam:PF01872 InterPro:IPR024072 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050661 GO:GO:0008270 GO:GO:0009658
SUPFAM:SSF53927 GO:GO:0009644 GO:GO:0009231 EMBL:AL096860
Gene3D:3.40.430.10 SUPFAM:SSF53597 GO:GO:0008835 GO:GO:0008703
TIGRFAMs:TIGR00227 TIGRFAMs:TIGR00326 GO:GO:0046443 eggNOG:COG3236
InterPro:IPR012816 Pfam:PF08719 TIGRFAMs:TIGR02464
HOGENOM:HOG000257443 IPI:IPI00548640 PIR:T12994 RefSeq:NP_190323.1
UniGene:At.53819 ProteinModelPortal:Q9STY4 SMR:Q9STY4 STRING:Q9STY4
PaxDb:Q9STY4 PRIDE:Q9STY4 EnsemblPlants:AT3G47390.1 GeneID:823893
KEGG:ath:AT3G47390 TAIR:At3g47390 InParanoid:Q9STY4 OMA:MSEAPRL
PhylomeDB:Q9STY4 ProtClustDB:CLSN2685169 ArrayExpress:Q9STY4
Genevestigator:Q9STY4 Uniprot:Q9STY4
Length = 599
Score = 169 (64.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 54/189 (28%), Positives = 89/189 (47%)
Query: 14 SSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SP+P GCVI ++ GY + G AE AL AA + +T Y+ +EP
Sbjct: 50 TSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAE--ALAVEAAGEFS-RGATAYLNMEPGD 106
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK------QGLMQKE 126
G AL+++GI++V++ I P + G + +L S GI V + + ++
Sbjct: 107 CHG-DHTAVSALVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIEVNVLGEDFESKVLED 165
Query: 127 AYE----INIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR 182
A + +N R +P+ +K A +LD K + + + WI+SK SR R
Sbjct: 166 ARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAAWISSKLSRTRVFELRGG 225
Query: 183 SCAILTGKN 191
S A++ G N
Sbjct: 226 SDAVIVGGN 234
>UNIPROTKB|P68398 [details] [associations]
symbol:tadA "tRNA-specific adenosine deaminase monomer"
species:83333 "Escherichia coli K-12" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0002100 "tRNA wobble adenosine to
inosine editing" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008251 "tRNA-specific adenosine deaminase
activity" evidence=IDA] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0008270 SUPFAM:SSF53927 EMBL:D64044 EMBL:U36841
GO:GO:0008251 eggNOG:COG0590 HOGENOM:HOG000085050 EMBL:X72336
GO:GO:0002100 PIR:F65033 RefSeq:NP_417054.2 RefSeq:YP_490787.1
PDB:1Z3A PDBsum:1Z3A ProteinModelPortal:P68398 SMR:P68398
IntAct:P68398 EnsemblBacteria:EBESCT00000001603
EnsemblBacteria:EBESCT00000015854 GeneID:12932251 GeneID:947027
KEGG:ecj:Y75_p2512 KEGG:eco:b2559 PATRIC:32120517 EchoBASE:EB1346
EcoGene:EG11372 KO:K11991 OMA:NDEYYMR ProtClustDB:PRK10860
BioCyc:EcoCyc:EG11372-MONOMER BioCyc:ECOL316407:JW2543-MONOMER
BioCyc:MetaCyc:EG11372-MONOMER EvolutionaryTrace:P68398
Genevestigator:P68398 Uniprot:P68398
Length = 167
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 50/164 (30%), Positives = 75/164 (45%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>UNIPROTKB|Q83DS3 [details] [associations]
symbol:CBU_0622 "tRNA-specific adenosine deaminase"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:AE016828 GenomeReviews:AE016828_GR HOGENOM:HOG000085050
KO:K11991 OMA:MCAGLIV RefSeq:NP_819652.2 ProteinModelPortal:Q83DS3
GeneID:1208507 KEGG:cbu:CBU_0622 PATRIC:17929929
ProtClustDB:CLSK914193 BioCyc:CBUR227377:GJ7S-620-MONOMER
Uniprot:Q83DS3
Length = 148
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 37/102 (36%), Positives = 58/102 (56%)
Query: 4 ALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQ--GY 57
AL AK + ++ P +G V+VKE I+ G+ + N HAEI AL NAA + Y
Sbjct: 10 ALALAKKANENNEVP-IGAVLVKENEIVGHGFNEPITLNDPTAHAEILALRNAAKRVGNY 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDP 99
+ ++T+Y+TLEPC+ C A+I++ IK+++ DP
Sbjct: 69 RLVDTTLYVTLEPCAM------CVGAMIQARIKRLVFGAFDP 104
>TIGR_CMR|CBU_0622 [details] [associations]
symbol:CBU_0622 "zinc-binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISS] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000085050 KO:K11991
OMA:MCAGLIV RefSeq:NP_819652.2 ProteinModelPortal:Q83DS3
GeneID:1208507 KEGG:cbu:CBU_0622 PATRIC:17929929
ProtClustDB:CLSK914193 BioCyc:CBUR227377:GJ7S-620-MONOMER
Uniprot:Q83DS3
Length = 148
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 37/102 (36%), Positives = 58/102 (56%)
Query: 4 ALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQ--GY 57
AL AK + ++ P +G V+VKE I+ G+ + N HAEI AL NAA + Y
Sbjct: 10 ALALAKKANENNEVP-IGAVLVKENEIVGHGFNEPITLNDPTAHAEILALRNAAKRVGNY 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDP 99
+ ++T+Y+TLEPC+ C A+I++ IK+++ DP
Sbjct: 69 RLVDTTLYVTLEPCAM------CVGAMIQARIKRLVFGAFDP 104
>UNIPROTKB|Q9KTN7 [details] [associations]
symbol:VC_0864 "YfhC protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISS] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 KO:K11991 OMA:IMHAEIM PIR:D82271
RefSeq:NP_230511.1 ProteinModelPortal:Q9KTN7 DNASU:2614531
GeneID:2614531 KEGG:vch:VC0864 PATRIC:20080832
ProtClustDB:CLSK874134 Uniprot:Q9KTN7
Length = 193
Score = 130 (50.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 20 VGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNA--AAQGYDVYNSTVYITLEPCSY 73
VG V+V++ II+ G+ T HAEI+ + A A Y + ++T+Y+TLEPC
Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS-----VKQGLMQKEAY 128
P C AL+ S +K+++ D +G V L S+ + V++GL+++E
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGT-VMDLFSSQAAYHYATVEKGLLEEECR 162
Query: 129 EINIGFFSRMQRGI 142
FF R ++ I
Sbjct: 163 AQLQAFFQRRRKEI 176
>TIGR_CMR|VC_0864 [details] [associations]
symbol:VC_0864 "zinc-binding domain protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 KO:K11991 OMA:IMHAEIM PIR:D82271
RefSeq:NP_230511.1 ProteinModelPortal:Q9KTN7 DNASU:2614531
GeneID:2614531 KEGG:vch:VC0864 PATRIC:20080832
ProtClustDB:CLSK874134 Uniprot:Q9KTN7
Length = 193
Score = 130 (50.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 20 VGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNA--AAQGYDVYNSTVYITLEPCSY 73
VG V+V++ II+ G+ T HAEI+ + A A Y + ++T+Y+TLEPC
Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS-----VKQGLMQKEAY 128
P C AL+ S +K+++ D +G V L S+ + V++GL+++E
Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGT-VMDLFSSQAAYHYATVEKGLLEEECR 162
Query: 129 EINIGFFSRMQRGI 142
FF R ++ I
Sbjct: 163 AQLQAFFQRRRKEI 176
>POMBASE|SPCC4G3.16 [details] [associations]
symbol:SPCC4G3.16 "CMP deaminase family/
methyltransferase bifunctional enzyme involved in riboflavin
biosynthesis and tRNA pseudouridine biosynthesis (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=ISO] InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383
PROSITE:PS00903 UniPathway:UPA00275 PomBase:SPCC4G3.16 Pfam:PF10294
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0009231 GO:GO:0009982 InterPro:IPR019410
GO:GO:0031119 PIR:T41360 RefSeq:NP_587822.1 HSSP:P17618
ProteinModelPortal:P87241 STRING:P87241 EnsemblFungi:SPCC4G3.16.1
GeneID:2539515 KEGG:spo:SPCC4G3.16 eggNOG:COG0117 KO:K14655
OrthoDB:EOG4X3M9Q NextBio:20800676 GO:GO:0008835 Uniprot:P87241
Length = 405
Score = 133 (51.9 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 40/126 (31%), Positives = 62/126 (49%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS-PGGNHAEIDALLNAAAQGY-- 57
M AL +AK + VG VIV+ +I+S GY++ PG HAE A+ +
Sbjct: 262 MLKALNEAKKCEPTDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNPTD 321
Query: 58 DVYNSTVYITLEPCSY-FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGI 116
+ + +Y T+EPCS CT+ ++K V++ +P+ V +GV L AGI
Sbjct: 322 SLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLKKAGI 381
Query: 117 SVKQGL 122
V + L
Sbjct: 382 VVIEKL 387
>UNIPROTKB|Q81W19 [details] [associations]
symbol:BAS0020 "Cytidine/deoxycytidylate deaminase
zinc-binding domain protein" species:1392 "Bacillus anthracis"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 HOGENOM:HOG000085050
OMA:MCAGLIV RefSeq:NP_842589.1 RefSeq:YP_016622.1
RefSeq:YP_026308.1 ProteinModelPortal:Q81W19 SMR:Q81W19
DNASU:1086637 EnsemblBacteria:EBBACT00000009675
EnsemblBacteria:EBBACT00000016689 EnsemblBacteria:EBBACT00000021371
GeneID:1086637 GeneID:2816273 GeneID:2848286 KEGG:ban:BA_0018
KEGG:bar:GBAA_0018 KEGG:bat:BAS0020 ProtClustDB:CLSK915687
BioCyc:BANT260799:GJAJ-23-MONOMER BioCyc:BANT261594:GJ7F-24-MONOMER
Uniprot:Q81W19
Length = 166
Score = 116 (45.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 43/165 (26%), Positives = 80/165 (48%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNAAAQ- 55
M LA+++AK + P +G VIV +IS + T+ HAE+ A+ A +
Sbjct: 10 MQLAIEEAKKAEAIQEVP-IGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDEACKKL 68
Query: 56 G-YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
G + + ++T+Y+TLEPC P C ++ S +K+V+ DP +G + L
Sbjct: 69 GTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMNLLTDE 122
Query: 115 GIS----VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDN 155
+ V G++++E + FF +++ ++ K+ S +N
Sbjct: 123 RFNHQCEVVAGVLEEECGTLLTNFFRELRKKRKAIK-KLEKSNEN 166
>TIGR_CMR|BA_0018 [details] [associations]
symbol:BA_0018 "cytidine/deoxycytidylate deaminase
zinc-binding domain protein" species:198094 "Bacillus anthracis
str. Ames" [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=ISS] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 HOGENOM:HOG000085050
OMA:MCAGLIV RefSeq:NP_842589.1 RefSeq:YP_016622.1
RefSeq:YP_026308.1 ProteinModelPortal:Q81W19 SMR:Q81W19
DNASU:1086637 EnsemblBacteria:EBBACT00000009675
EnsemblBacteria:EBBACT00000016689 EnsemblBacteria:EBBACT00000021371
GeneID:1086637 GeneID:2816273 GeneID:2848286 KEGG:ban:BA_0018
KEGG:bar:GBAA_0018 KEGG:bat:BAS0020 ProtClustDB:CLSK915687
BioCyc:BANT260799:GJAJ-23-MONOMER BioCyc:BANT261594:GJ7F-24-MONOMER
Uniprot:Q81W19
Length = 166
Score = 116 (45.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 43/165 (26%), Positives = 80/165 (48%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNAAAQ- 55
M LA+++AK + P +G VIV +IS + T+ HAE+ A+ A +
Sbjct: 10 MQLAIEEAKKAEAIQEVP-IGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDEACKKL 68
Query: 56 G-YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
G + + ++T+Y+TLEPC P C ++ S +K+V+ DP +G + L
Sbjct: 69 GTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMNLLTDE 122
Query: 115 GIS----VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDN 155
+ V G++++E + FF +++ ++ K+ S +N
Sbjct: 123 RFNHQCEVVAGVLEEECGTLLTNFFRELRKKRKAIK-KLEKSNEN 166
>UNIPROTKB|Q60C22 [details] [associations]
symbol:yfhC "Zinc-binding domain protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:AE017282 GenomeReviews:AE017282_GR HOGENOM:HOG000085050
OMA:MCAGLIV RefSeq:YP_112823.1 ProteinModelPortal:Q60C22 SMR:Q60C22
GeneID:3104826 KEGG:mca:MCA0289 PATRIC:22604319 Uniprot:Q60C22
Length = 137
Score = 107 (42.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/127 (26%), Positives = 65/127 (51%)
Query: 20 VGCVIVKEKRIISCGY-----TKSPGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCS 72
+G V+VK I+ G+ T P HAEI AL A A+ Y + ++T+Y+TLEPC+
Sbjct: 14 IGAVLVKNGEILGEGHNQPISTHDPTA-HAEIVALRAAGARLGNYRLVDTTLYVTLEPCA 72
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPN--PLVSGKGV--AQLISAGISVKQGLMQKEAY 128
C A++ + + +++ DP +S + A+ ++ + + +G++ +E
Sbjct: 73 M------CMGAILHARVGRLVFGAADPRRGAAISALRLNEAEFMNHRVELLEGVLAEECS 126
Query: 129 EINIGFF 135
++ FF
Sbjct: 127 QLLRDFF 133
>UNIPROTKB|Q47XY3 [details] [associations]
symbol:CPS_3669 "Cytidine/deoxycytidylate deaminase
zinc-binding domain protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0590 HOGENOM:HOG000085050 KO:K11991 OMA:MCAGLIV
RefSeq:YP_270337.1 ProteinModelPortal:Q47XY3 SMR:Q47XY3
STRING:Q47XY3 GeneID:3520723 KEGG:cps:CPS_3669 PATRIC:21470265
BioCyc:CPSY167879:GI48-3691-MONOMER Uniprot:Q47XY3
Length = 182
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 34/131 (25%), Positives = 65/131 (49%)
Query: 20 VGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAA--QGYDVYNSTVYITLEPCSY 73
VG V+V + +II G+ +S +HAE++A+ A Y + + T+Y+TLEPC
Sbjct: 44 VGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIRQAGEFLNNYRLLDCTLYVTLEPC-- 101
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL----ISAGISVKQGLMQKEAYE 129
P C L+ S I +++ A +D +G + ++ + V ++++E +
Sbjct: 102 ----PMCAGLLVHSRINRLVYACSDLKTGAAGSAFNLVNNPQLNHQLEVCSNILEEECSQ 157
Query: 130 INIGFFSRMQR 140
+ FF R ++
Sbjct: 158 LLSAFFKRRRK 168
>TIGR_CMR|CPS_3669 [details] [associations]
symbol:CPS_3669 "cytidine/deoxycytidylate deaminase
zinc-binding domain protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=ISS] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0590
HOGENOM:HOG000085050 KO:K11991 OMA:MCAGLIV RefSeq:YP_270337.1
ProteinModelPortal:Q47XY3 SMR:Q47XY3 STRING:Q47XY3 GeneID:3520723
KEGG:cps:CPS_3669 PATRIC:21470265
BioCyc:CPSY167879:GI48-3691-MONOMER Uniprot:Q47XY3
Length = 182
Score = 118 (46.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 34/131 (25%), Positives = 65/131 (49%)
Query: 20 VGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAA--QGYDVYNSTVYITLEPCSY 73
VG V+V + +II G+ +S +HAE++A+ A Y + + T+Y+TLEPC
Sbjct: 44 VGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIRQAGEFLNNYRLLDCTLYVTLEPC-- 101
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL----ISAGISVKQGLMQKEAYE 129
P C L+ S I +++ A +D +G + ++ + V ++++E +
Sbjct: 102 ----PMCAGLLVHSRINRLVYACSDLKTGAAGSAFNLVNNPQLNHQLEVCSNILEEECSQ 157
Query: 130 INIGFFSRMQR 140
+ FF R ++
Sbjct: 158 LLSAFFKRRRK 168
>UNIPROTKB|Q8EC53 [details] [associations]
symbol:tadA "tRNA-specific adenosine deaminase TadA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000085050 KO:K11991 OMA:NDEYYMR HSSP:Q12178
RefSeq:NP_718845.2 ProteinModelPortal:Q8EC53 GeneID:1170979
KEGG:son:SO_3291 PATRIC:23526266 Uniprot:Q8EC53
Length = 157
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/148 (28%), Positives = 69/148 (46%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQ- 55
M +A+ A+ + P VG V+VK+ I+ GY S + HAEI L AA Q
Sbjct: 1 MRVAMAMAEKAEAEGEVP-VGAVLVKDGLQIATGYNLSISQHDPCAHAEI-LCLRAAGQT 58
Query: 56 --GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL-- 111
Y + ++T+Y+TLEPC+ C A++ S I +V+ D +G + L
Sbjct: 59 VENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAGTVLNLLQH 112
Query: 112 --ISAGISVKQGLMQKEAYEINIGFFSR 137
+ + V G++ ++ + FF R
Sbjct: 113 PAFNHQVEVTSGVLAQDCADQLSRFFKR 140
>TIGR_CMR|SO_3291 [details] [associations]
symbol:SO_3291 "cytidine/deoxycytidylate deaminase family
protein" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016193 Pfam:PF00383 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000085050 KO:K11991
OMA:NDEYYMR HSSP:Q12178 RefSeq:NP_718845.2
ProteinModelPortal:Q8EC53 GeneID:1170979 KEGG:son:SO_3291
PATRIC:23526266 Uniprot:Q8EC53
Length = 157
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/148 (28%), Positives = 69/148 (46%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQ- 55
M +A+ A+ + P VG V+VK+ I+ GY S + HAEI L AA Q
Sbjct: 1 MRVAMAMAEKAEAEGEVP-VGAVLVKDGLQIATGYNLSISQHDPCAHAEI-LCLRAAGQT 58
Query: 56 --GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL-- 111
Y + ++T+Y+TLEPC+ C A++ S I +V+ D +G + L
Sbjct: 59 VENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAGTVLNLLQH 112
Query: 112 --ISAGISVKQGLMQKEAYEINIGFFSR 137
+ + V G++ ++ + FF R
Sbjct: 113 PAFNHQVEVTSGVLAQDCADQLSRFFKR 140
>UNIPROTKB|Q886W8 [details] [associations]
symbol:PSPTO_1457 "Cytidine/deoxycytidylate deaminase
family protein" species:223283 "Pseudomonas syringae pv. tomato
str. DC3000" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
eggNOG:COG0590 EMBL:AE016853 GenomeReviews:AE016853_GR
HOGENOM:HOG000085050 HSSP:Q12178 OMA:MCAGLIV ProtClustDB:CLSK868218
RefSeq:NP_791283.1 ProteinModelPortal:Q886W8 GeneID:1183094
KEGG:pst:PSPTO_1457 PATRIC:19994158
BioCyc:PSYR223283:GJIX-1484-MONOMER Uniprot:Q886W8
Length = 169
Score = 110 (43.8 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 42/133 (31%), Positives = 66/133 (49%)
Query: 20 VGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA-AQG-YDVYNSTVYITLEPCSY 73
VG V+V II GY G+ HAE+ A+ +AA A G Y + ST+Y+TLEPCS
Sbjct: 34 VGAVVVHNGEIIGRGYNCPISGSDPSAHAEMVAIRDAARALGNYRLPGSTLYVTLEPCSM 93
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNP-LVSGKGVAQLISAG-----ISVKQGLMQKEA 127
C ++ S + +V+ +P +V +G Q S G + + G++ +E
Sbjct: 94 ------CAGLIVHSRVARVVYGALEPKAGIVQSQG--QFFSQGFLNHRVLFEGGVLGEEC 145
Query: 128 YEINIGFFSRMQR 140
+ FF R++R
Sbjct: 146 GAMLSEFF-RLRR 157
>UNIPROTKB|Q74H28 [details] [associations]
symbol:tadA "tRNA (Adenosine-34) deaminase" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000085050 OMA:MCAGLIV
RefSeq:NP_951127.1 ProteinModelPortal:Q74H28 GeneID:2688096
KEGG:gsu:GSU0065 PATRIC:22022869 ProtClustDB:CLSK827612
BioCyc:GSUL243231:GH27-124-MONOMER Uniprot:Q74H28
Length = 179
Score = 111 (44.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 38/150 (25%), Positives = 71/150 (47%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQG 56
M A+++A + P +G VIV++ +I G+ G N HAE+ A+ AA +
Sbjct: 16 MGKAIREAAKAAARDEVP-IGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAIRQAARRS 74
Query: 57 --YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGK----GVAQ 110
+ + +T+Y+TLEPC C A+I + +++V+ DP +G
Sbjct: 75 ANWRLTGATLYVTLEPCLM------CMGAIILARLERVVFGCYDPKGGAAGSLYDLSADP 128
Query: 111 LISAGISVKQGLMQKEAYEINIGFFSRMQR 140
++ + + G+ Q+E + FF ++R
Sbjct: 129 RLNHQVRLSPGVCQEECGTMLSDFFRDLRR 158
>TIGR_CMR|GSU_0065 [details] [associations]
symbol:GSU_0065 "cytidine/deoxycytidylate deaminase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000085050 OMA:MCAGLIV
RefSeq:NP_951127.1 ProteinModelPortal:Q74H28 GeneID:2688096
KEGG:gsu:GSU0065 PATRIC:22022869 ProtClustDB:CLSK827612
BioCyc:GSUL243231:GH27-124-MONOMER Uniprot:Q74H28
Length = 179
Score = 111 (44.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 38/150 (25%), Positives = 71/150 (47%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQG 56
M A+++A + P +G VIV++ +I G+ G N HAE+ A+ AA +
Sbjct: 16 MGKAIREAAKAAARDEVP-IGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAIRQAARRS 74
Query: 57 --YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGK----GVAQ 110
+ + +T+Y+TLEPC C A+I + +++V+ DP +G
Sbjct: 75 ANWRLTGATLYVTLEPCLM------CMGAIILARLERVVFGCYDPKGGAAGSLYDLSADP 128
Query: 111 LISAGISVKQGLMQKEAYEINIGFFSRMQR 140
++ + + G+ Q+E + FF ++R
Sbjct: 129 RLNHQVRLSPGVCQEECGTMLSDFFRDLRR 158
>TIGR_CMR|CHY_2556 [details] [associations]
symbol:CHY_2556 "putative comE operon protein 2"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0030413 "competence pheromone activity" evidence=ISS]
[GO:0030420 "establishment of competence for transformation"
evidence=ISS] InterPro:IPR002125 InterPro:IPR016192
InterPro:IPR016193 InterPro:IPR016473 Pfam:PF00383
PIRSF:PIRSF006019 PROSITE:PS00903 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0008152 eggNOG:COG2131 InterPro:IPR015517 PANTHER:PTHR11086
GO:GO:0016810 KO:K01493 RefSeq:YP_361349.1
ProteinModelPortal:Q3A935 STRING:Q3A935 GeneID:3728283
KEGG:chy:CHY_2556 PATRIC:21278159 HOGENOM:HOG000015714 OMA:TRSTCLA
ProtClustDB:CLSK842117 BioCyc:CHYD246194:GJCN-2555-MONOMER
Uniprot:Q3A935
Length = 170
Score = 109 (43.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 20 VGCVIVKEKRIISCGYTKSP-GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTP 78
VGC+ +E+ + G G HAE +A++ AA G ST+YIT +PCS
Sbjct: 77 VGCL--REQEHVPSGQRHELCRGLHAEQNAIIQAAVYGVSTSGSTIYITHQPCSL----- 129
Query: 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV-KQG 121
C + LI +G+++V+ + P+ L + AGI V K G
Sbjct: 130 -CAKMLINAGVERVVYKGDYPDSLA----INLFTEAGIKVVKYG 168
>UNIPROTKB|Q4K6X5 [details] [associations]
symbol:tadA "tRNA-specific adenosine deaminase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0008033 "tRNA
processing" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=ISS]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 GO:GO:0008270 SUPFAM:SSF53927
GO:GO:0016787 EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0008033
eggNOG:COG0590 HOGENOM:HOG000085050 OMA:MCAGLIV RefSeq:YP_262008.1
ProteinModelPortal:Q4K6X5 STRING:Q4K6X5 GeneID:3479339
KEGG:pfl:PFL_4928 PATRIC:19879331 ProtClustDB:CLSK868218
BioCyc:PFLU220664:GIX8-4969-MONOMER Uniprot:Q4K6X5
Length = 162
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 35/112 (31%), Positives = 54/112 (48%)
Query: 3 LALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--AQG 56
LAL ++ P VG V+V + ++I GY G+ HAE+ A+ AA
Sbjct: 23 LALAAQGAALGEVP---VGAVLVLDGQVIGRGYNCPISGSDPSAHAEMVAIREAAQAVSN 79
Query: 57 YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNP-LVSGKG 107
Y + ST+Y+TLEPCS C ++ S I +V+ +P +V +G
Sbjct: 80 YRLPGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEPKAGIVQSQG 125
>CGD|CAL0004621 [details] [associations]
symbol:orf19.1458 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008251 "tRNA-specific adenosine deaminase activity"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
InterPro:IPR002125 InterPro:IPR016192 InterPro:IPR016193
Pfam:PF00383 PROSITE:PS00903 CGD:CAL0004621 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 eggNOG:COG0590
KO:K15441 EMBL:AACQ01000008 EMBL:AACQ01000007 RefSeq:XP_722369.1
RefSeq:XP_722508.1 ProteinModelPortal:Q5ALW8 STRING:Q5ALW8
GeneID:3635801 GeneID:3635973 KEGG:cal:CaO19.1458
KEGG:cal:CaO19.9033 Uniprot:Q5ALW8
Length = 281
Score = 113 (44.8 bits), Expect = 0.00011, P = 0.00011
Identities = 45/171 (26%), Positives = 75/171 (43%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEK--RIISCGYTKSP----GGNHAEIDALLNAAA 54
M ++L ++ ++ P V C++V K +IIS GY + G HAE AL
Sbjct: 12 MAISLFVGYKALLNNETP-VSCIVVDSKSDKIISIGYNYTNHSLNGTQHAEFIALQRFGE 70
Query: 55 QGYDV-YNSTV-YITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLI 112
Q + YN + Y+T+EPC C L + GIKKVI N G G I
Sbjct: 71 QKSSIDYNDLILYVTVEPCIM------CASYLRQLGIKKVIFGCG--NDRFGGNGTILSI 122
Query: 113 SAGISVKQ-------GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNK 156
+ I++ G+ + E ++ F+ + P ++K + +++K
Sbjct: 123 HSDITLPNAAYSSIGGICRTEGIQLLRNFYIQQNESAPNPKIKKNTDIESK 173
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 32/124 (25%), Positives = 64/124 (51%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS-PGGNHAEIDALLNAAAQG--- 56
M +A+++A+ + VGCV+V ++IS G+++ PG HAE AL ++
Sbjct: 441 MEMAIEEAEKCGETQTQFNVGCVLVHNGQVISTGHSRELPGNTHAEQCALEKYFSKNGGE 500
Query: 57 YDVYNST-VYITLEPCSY-FGYTPPCTEALIKS-GIKKVIIAINDPNPLV-SGKGVAQLI 112
+V T ++ ++EPCS PC + ++++ IK + + +P+ V + +L+
Sbjct: 501 REVPAGTEIFTSMEPCSLRLSGNLPCVDRILQTKNIKTCFVGVLEPDIFVKNNSSYKKLL 560
Query: 113 SAGI 116
G+
Sbjct: 561 DHGV 564
>TIGR_CMR|CHY_2682 [details] [associations]
symbol:CHY_2682 "cytidine/deoxycytidylate deaminase family
protein" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787 eggNOG:COG0590
HOGENOM:HOG000085050 OMA:NDEYYMR RefSeq:YP_361468.1
ProteinModelPortal:Q3A8R6 SMR:Q3A8R6 STRING:Q3A8R6 GeneID:3726637
KEGG:chy:CHY_2682 PATRIC:21278385
BioCyc:CHYD246194:GJCN-2680-MONOMER Uniprot:Q3A8R6
Length = 153
Score = 101 (40.6 bits), Expect = 0.00039, P = 0.00039
Identities = 46/155 (29%), Positives = 74/155 (47%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNAAAQ- 55
M AL++A+ + P VG V+V II G+ T S HAEI AL AA++
Sbjct: 7 MAEALKEAEKAALQGEVP-VGAVVVYNGEIIGRGHNLRETFSDPTAHAEIVALKEAASKL 65
Query: 56 -GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGK--GVAQLI 112
+ + + T+Y+T+EPC P C A+ ++ IK ++ D L +G + L+
Sbjct: 66 KNWQLKDCTLYVTVEPC------PMCAGAIYQARIKTLVYGAPD---LKAGAVDTLFDLV 116
Query: 113 -----SAGISVKQGLMQKEAYEINIGFF-SRMQRG 141
+ + V G++ EA +I FF + RG
Sbjct: 117 RNPRLNHRVEVISGVLAAEASKIITDFFREKRNRG 151
>UNIPROTKB|Q0C0I7 [details] [associations]
symbol:HNE_2058 "Riboflavin biosynthesis protein RibD
C-terminal domain protein" species:228405 "Hyphomonas neptunium
ATCC 15444" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR002734 InterPro:IPR011549 Pfam:PF01872
InterPro:IPR024072 GO:GO:0050661 GO:GO:0009231 EMBL:CP000158
GenomeReviews:CP000158_GR Gene3D:3.40.430.10 SUPFAM:SSF53597
HOGENOM:HOG000225965 GO:GO:0008703 TIGRFAMs:TIGR00227
eggNOG:COG1985 KO:K11752 RefSeq:YP_760756.1
ProteinModelPortal:Q0C0I7 STRING:Q0C0I7 GeneID:4289460
KEGG:hne:HNE_2058 PATRIC:32216957 OMA:APTFMDG
ProtClustDB:CLSK777674 BioCyc:HNEP228405:GI69-2082-MONOMER
Uniprot:Q0C0I7
Length = 217
Score = 105 (42.0 bits), Expect = 0.00060, P = 0.00060
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
+ +KIASSLD + +L + +SQWITS SR H RA + AI+ G
Sbjct: 6 ITLKIASSLDGRIALADGTSQWITSSASRARGHQMRAENDAIMVG 50
>UNIPROTKB|Q97TC0 [details] [associations]
symbol:SP_0020 "Cytidine/deoxycytidylate deaminase family
protein" species:170187 "Streptococcus pneumoniae TIGR4"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002125
InterPro:IPR016192 InterPro:IPR016193 Pfam:PF00383 PROSITE:PS00903
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0008152 GO:GO:0016787
EMBL:AE005672 GenomeReviews:AE005672_GR HOGENOM:HOG000085050
HSSP:Q12178 PIR:C95002 RefSeq:NP_344572.1 ProteinModelPortal:Q97TC0
SMR:Q97TC0 EnsemblBacteria:EBSTRT00000025561 GeneID:929767
KEGG:spn:SP_0020 PATRIC:19704361 OMA:IMHAEIM ProtClustDB:CLSK883891
Uniprot:Q97TC0
Length = 155
Score = 99 (39.9 bits), Expect = 0.00081, P = 0.00081
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP----GGNHAEIDAL--LNAAA 54
M AL++A++++ P +GCVIVK+ II G+ HAEI A+ N +
Sbjct: 12 MREALREAEIALEHDEIP-IGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANLSE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + + + T+++T+EPC
Sbjct: 71 ESWRLLDCTLFVTIEPC 87
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 192 0.00096 110 3 11 22 0.48 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 605 (64 KB)
Total size of DFA: 166 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.09u 0.07s 18.16t Elapsed: 00:00:11
Total cpu time: 18.10u 0.07s 18.17t Elapsed: 00:00:11
Start: Thu Aug 15 10:54:12 2013 End: Thu Aug 15 10:54:23 2013