RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8195
(192 letters)
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 105 bits (263), Expect = 5e-30
Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 4/143 (2%)
Query: 1 MTLALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK NP VG V+VK+ +I+ G G HAE+ A+ A G
Sbjct: 6 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMA---GAHA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ + AGI V+
Sbjct: 63 EGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGI 142
+G++ +A +N F M+ G+
Sbjct: 123 EGILADQAERLNEKFLHFMRTGL 145
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 147
Score = 98.8 bits (245), Expect = 2e-27
Identities = 59/142 (41%), Positives = 91/142 (64%), Gaps = 2/142 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK + +PNP VG V+VK+ RII+ G+ GG HAE A+ +A +G D+
Sbjct: 6 MKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDL 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+ +TLEPC + G TPPCT+ +I+SGIK V+I DPNP VSG GV + + GI V
Sbjct: 66 RGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVI 124
Query: 120 QGLMQKEAYEINIGFFSRMQRG 141
+G++++E ++ F + + +
Sbjct: 125 EGVLEEEVKKLCEFFITYVTKK 146
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 83.8 bits (206), Expect = 2e-21
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 6/144 (4%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
M AL AK + + VG V+V R+I G+ + G + A + A QG V
Sbjct: 11 MRHALTLAKRAWDE-REVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 69
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG----I 116
+ I C A+I S I +V+ D +G + L G +
Sbjct: 70 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRV 129
Query: 117 SVKQGLMQKEAYEINIGFFSRMQR 140
+ +G++ E + FF RM+R
Sbjct: 130 EITEGILADECAALLSDFF-RMRR 152
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 80.6 bits (198), Expect = 3e-20
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQG 56
+ +AL++AK + VG +IVKE IIS + HAE+ A+ A +
Sbjct: 7 LKVALREAKRAF-EKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 65
Query: 57 YDVY--NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL--- 111
Y +Y+TLEPC C+ AL+ S I+KVI + D L
Sbjct: 66 NTKYLEGCELYVTLEPC------IMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEP 119
Query: 112 -ISAGISVKQGLMQKEAYEINIGFFSRMQRGI 142
++ + + + +EA E+ FF +++ I
Sbjct: 120 TLNHRVKWEYYPL-EEASELLSEFFKKLRNNI 150
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 77.7 bits (190), Expect = 3e-19
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
MTLA+++AK + +G +I K+ +I+ + A A + V
Sbjct: 8 MTLAIEEAKKAAQL-GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL 66
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGI---- 116
S C ++ S I +V+ +DP SG + L +
Sbjct: 67 GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRA 126
Query: 117 SVKQGLMQKEAYEINIGFFSRM 138
V +G++++ + FF +
Sbjct: 127 IVDKGVLKEACSTLLTTFFKNL 148
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 75.3 bits (184), Expect = 3e-18
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 18/144 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIV--KEKRIISCGYTKSPGGNHAEIDALLNAAAQG-- 56
M +A ++A L P +G ++ K+ ++ G+ A + ++
Sbjct: 13 MDIAYEEAALGYKEGGVP-IGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 71
Query: 57 ---YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS 113
++T+Y TL PC CT A+I GI + ++ N KG L +
Sbjct: 72 LEGKVYKDTTLYTTLSPC------DMCTGAIIMYGIPRCVVGENVN---FKSKGEKYLQT 122
Query: 114 AGISVKQGLMQKEAYEINIGFFSR 137
G V + + +I F
Sbjct: 123 RGHEVV-VVDDERCKKIMKQFIDE 145
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
europaea [TaxId: 915]}
Length = 189
Score = 75.9 bits (186), Expect = 4e-18
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 28/158 (17%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEK--RIISCGYTKSPGGN----HAEIDALLNAAA 54
M L+ + +I + P + + +I+ G + G HAEI AL A A
Sbjct: 30 MGYVLELVRANIAADGGP-FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQA 88
Query: 55 QGY-------DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSG-- 105
+ + + + EPC C A+I SG++ ++ A + G
Sbjct: 89 KLDTHDLSADGLPACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVEAIGFD 142
Query: 106 ------KGVAQLISAGISVKQGLMQKEAYEINIGFFSR 137
+ L + GI+V GL++ A + + +
Sbjct: 143 EGPRPENWMGGLEARGITVTTGLLRDAACALLREYNAC 180
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 75.0 bits (183), Expect = 9e-18
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 36 TKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIA 95
S HAE++A+L AA G + +T+Y+TL PC C +A+ +SGIKK++
Sbjct: 97 WSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPD------CAKAIAQSGIKKLVYC 150
Query: 96 INDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFF 135
+ L +AGI V + +K ++N
Sbjct: 151 ETYDKNKPGWDDI--LRNAGIEVF-NVPKKNLNKLNWENI 187
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 70.7 bits (172), Expect = 2e-16
Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 18/155 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+ A+ A +N+ G VIVK+ II+ G N A + A + V
Sbjct: 9 LKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVL 68
Query: 61 ------NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVA----Q 110
+ +Y + EPC P C A+ + K V A + +G + +
Sbjct: 69 GAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKE 122
Query: 111 LISAGISVKQGLMQKEAYEINIGF--FSRMQRGIP 143
+ Q E F +
Sbjct: 123 IDKPAEERTIPFYQVTLTEHLSPFQAWRNFANKKE 157
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 64.5 bits (156), Expect = 3e-14
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 1/116 (0%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
M LAL +A+ + P +G V+V + R+I+ ++ N A + +
Sbjct: 7 MELALVEARSAGERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 65
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGI 116
+ C A+ + I+++ DP GV
Sbjct: 66 GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTC 121
>d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 214
Score = 62.4 bits (150), Expect = 7e-13
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN 191
P+V +K A+SLD K + S+WITS+ +R D+ +R +IL G
Sbjct: 1 PYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVG 49
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 56.8 bits (136), Expect = 6e-11
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGKN 191
P+V +K AS+LD K + + S+WIT + R H R A+L G
Sbjct: 1 PFVALKYASTLDGKIADHRGDSKWITD-KLRFKVHEMRNIYSAVLVGAG 48
>d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii
[TaxId: 2190]}
Length = 219
Score = 56.2 bits (134), Expect = 1e-10
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
P++ + +LD K + NN S I+ +E H RA I+ G
Sbjct: 4 PYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRANVDGIMVG 49
>d1u9ya2 c.61.1.2 (A:156-284) Phosphoribosylpyrophosphate synthetase
{Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 129
Score = 25.7 bits (56), Expect = 2.1
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 71 CSYFGYTPPCTEALIKSGIKKVIIA--INDPNPLVSGKGVAQLISAGI 116
C + L +G+++V+ VS VA++I +
Sbjct: 85 CVHPVLIGDALNKLYSAGVEEVVGTDTYLSEVSKVS---VAEVIVDLL 129
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 25.2 bits (55), Expect = 4.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 47 DALLNAAAQGYDVYNS 62
DA + A DV+N+
Sbjct: 165 DACILAKNANMDVFNA 180
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 25.3 bits (55), Expect = 4.9
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 79 PCTEALIKSGIKKVIIAINDPNPL 102
P +AL GI+ + + + + L
Sbjct: 33 PLADALAAGGIRTLEVTLRSQHGL 56
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 25.5 bits (55), Expect = 5.4
Identities = 28/166 (16%), Positives = 50/166 (30%), Gaps = 15/166 (9%)
Query: 8 AKLSINS------SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
A +++NS PNP + + V R + C + L + +
Sbjct: 81 AIMAVNSFVKDCEDPNPLIRALAV---RTMGCIRVDKI------TEYLCEPLRKCLKDED 131
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
V T C + + + + I D NP+V VA L S
Sbjct: 132 PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 191
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWI 167
+ + + + W ++ I L N + +Q I
Sbjct: 192 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSI 237
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 227
Score = 24.8 bits (54), Expect = 6.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 47 DALLNAAAQGYDVYNS 62
DAL+ + G DV+N
Sbjct: 154 DALITSKKFGVDVFNC 169
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 24.5 bits (53), Expect = 9.1
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 79 PCTEALIKSGIKKVIIAINDPNPL 102
P +AL+ G++ + + + +
Sbjct: 31 PMAKALVAGGVRVLNVTLRTECAV 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 702,128
Number of extensions: 30885
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 26
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)