Query psy8196
Match_columns 230
No_of_seqs 284 out of 1857
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:03:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gui_A DNA polymerase III epsi 100.0 1.9E-39 6.5E-44 263.4 20.3 174 2-176 9-188 (194)
2 2p1j_A POLIII, DNA polymerase 100.0 5.5E-36 1.9E-40 241.8 18.6 165 2-173 12-176 (186)
3 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.6E-35 5.6E-40 241.8 18.1 174 2-178 10-200 (204)
4 3mxm_B Three prime repair exon 100.0 1.1E-35 3.8E-40 249.5 12.1 165 2-171 12-213 (242)
5 3u3y_B Three prime repair exon 100.0 6.5E-35 2.2E-39 251.9 11.6 166 2-171 12-213 (314)
6 2f96_A Ribonuclease T; RNAse, 100.0 5.7E-34 1.9E-38 236.3 14.9 167 3-172 30-212 (224)
7 2xri_A ERI1 exoribonuclease 3; 100.0 7.3E-34 2.5E-38 235.8 14.7 171 2-177 31-218 (224)
8 1zbh_A 3'-5' exonuclease ERI1; 100.0 3.8E-33 1.3E-37 240.8 18.7 175 2-179 78-269 (299)
9 3v9w_A Ribonuclease T; DEDD nu 100.0 3.7E-33 1.3E-37 232.8 17.1 167 3-172 38-220 (235)
10 1y97_A Three prime repair exon 100.0 3E-33 1E-37 233.7 15.0 166 1-172 9-209 (238)
11 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 2E-32 6.7E-37 240.5 15.8 174 2-179 128-319 (349)
12 3cg7_A CRN-4, cell death-relat 100.0 2.1E-32 7E-37 237.0 12.7 173 3-178 20-214 (308)
13 2qxf_A Exodeoxyribonuclease I; 100.0 2E-31 6.8E-36 242.6 14.0 170 3-175 10-203 (482)
14 1wlj_A Interferon stimulated g 100.0 4.8E-32 1.7E-36 219.2 5.7 157 2-172 5-168 (189)
15 3tr8_A Oligoribonuclease; tran 100.0 4.1E-31 1.4E-35 213.1 9.6 154 2-171 9-179 (186)
16 2igi_A Oligoribonuclease; RNAs 100.0 4.3E-31 1.5E-35 211.7 9.1 155 2-172 5-176 (180)
17 2gbz_A Oligoribonuclease; ORN, 100.0 2.5E-30 8.7E-35 210.0 10.4 156 2-173 9-181 (194)
18 2kfn_A Klenow fragment of DNA 99.4 2.2E-12 7.4E-17 120.8 13.8 142 3-172 27-192 (605)
19 4hec_A Putative uncharacterize 99.3 2.7E-12 9.1E-17 102.9 7.1 148 2-174 22-183 (190)
20 1x9m_A DNA polymerase; DNA plo 99.1 3.5E-11 1.2E-15 114.3 6.7 137 4-172 1-182 (698)
21 4dfk_A DNA polymerase I, therm 98.8 6.7E-09 2.3E-13 95.7 7.2 117 4-173 12-128 (540)
22 4gmj_B CCR4-NOT transcription 98.8 1.2E-07 4E-12 80.6 13.4 168 3-172 35-244 (285)
23 2d5r_A CCR4-NOT transcription 98.4 2.8E-06 9.7E-11 70.8 12.3 168 3-172 25-234 (252)
24 1qht_A Protein (DNA polymerase 98.4 2.8E-06 9.4E-11 81.6 13.7 148 3-170 136-327 (775)
25 2p51_A SPCC18.06C protein; DED 98.4 4.3E-06 1.5E-10 72.0 13.0 167 3-171 46-254 (333)
26 1uoc_A POP2; hydrolase, DEDD n 98.3 1.2E-05 4.3E-10 68.1 12.4 169 3-172 39-264 (289)
27 3pv8_A DNA polymerase I; DNA p 98.2 1E-06 3.4E-11 82.1 6.0 129 3-171 30-179 (592)
28 3saf_A Exosome component 10; e 98.2 4.9E-06 1.7E-10 74.5 9.4 129 3-171 130-275 (428)
29 1noy_A Protein (DNA polymerase 98.2 2.4E-05 8.1E-10 69.3 13.7 160 3-169 107-335 (388)
30 3iay_A DNA polymerase delta ca 98.2 4.7E-05 1.6E-09 74.2 16.4 156 3-169 250-465 (919)
31 2e6m_A Werner syndrome ATP-dep 98.0 3.1E-05 1.1E-09 62.3 8.8 88 77-172 87-194 (208)
32 1yt3_A Ribonuclease D, RNAse D 97.9 3.6E-05 1.2E-09 67.7 9.5 89 76-172 64-169 (375)
33 2hbj_A Exosome complex exonucl 97.8 0.00013 4.5E-09 65.0 10.7 87 77-172 150-253 (410)
34 2gv9_A DNA polymerase; polymer 97.8 0.00038 1.3E-08 69.5 14.6 167 3-169 321-550 (1193)
35 1s5j_A DNA polymerase I; repli 97.7 6E-05 2E-09 73.0 7.8 155 3-166 191-386 (847)
36 3cym_A Uncharacterized protein 97.6 0.0005 1.7E-08 61.7 11.6 88 75-172 84-186 (440)
37 3qex_A DNA polymerase, GP43; d 97.3 0.0023 8E-08 62.0 12.1 160 2-168 108-337 (903)
38 3k59_A POL II, DNA polymerase 97.2 0.0043 1.5E-07 59.5 12.9 149 2-169 153-349 (786)
39 3d45_A Poly(A)-specific ribonu 96.7 0.0017 5.8E-08 59.3 5.7 98 71-171 265-390 (507)
40 2py5_A DNA polymerase; protein 96.7 0.0024 8.4E-08 59.1 6.5 126 2-169 6-180 (575)
41 1vk0_A Hypothetical protein; h 96.5 0.0099 3.4E-07 47.8 8.3 87 77-171 99-205 (206)
42 1bgx_T TAQ DNA polymerase; DNA 96.4 0.0069 2.4E-07 58.4 7.9 80 76-172 340-419 (832)
43 2a1r_A Poly(A)-specific ribonu 96.2 0.0097 3.3E-07 53.2 7.0 99 71-172 270-396 (430)
44 3q7c_A Nucleoprotein; deddh ex 80.8 0.54 1.9E-05 37.5 1.3 92 5-111 60-153 (243)
45 3mwp_A Nucleoprotein; structur 71.1 2 7E-05 38.0 2.4 92 5-111 394-487 (577)
46 3ikm_A DNA polymerase subunit 52.7 1.6 5.5E-05 43.0 -1.8 36 84-125 194-229 (1172)
47 2a1r_A Poly(A)-specific ribonu 44.0 48 0.0017 29.1 6.5 44 3-46 23-94 (430)
48 1g6u_A Domain swapped dimer; d 20.9 80 0.0027 17.9 2.5 20 202-221 16-35 (48)
No 1
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=1.9e-39 Score=263.41 Aligned_cols=174 Identities=54% Similarity=0.945 Sum_probs=155.1
Q ss_pred CceEEEEecCCCCCC----CCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHH
Q psy8196 2 HRHIVLDIETTGLNI----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~----~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~ 77 (230)
|++++||+||||+++ ..+++|||||+|.++++.++++.|+.+|+|..+++++++++||||++++.++|+|.+++.+
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~ 88 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADE 88 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHHHHHH
Confidence 799999999999998 2348999999999998888766799999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcccccHHHHHHHHHHcCCCC--cccccchHhHHHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCH
Q psy8196 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGG 155 (230)
Q Consensus 78 ~~~fl~~~~lV~hna~FD~~~L~~~l~~~g~~~--~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~A 155 (230)
|.+|+++..+|+||+.||+.||++++.++|++. +...+ .++||+.+++.++|+.+++|++||++||++..+|..|+|
T Consensus 89 ~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~-~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~~~~~~H~A 167 (194)
T 2gui_A 89 FMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFC-KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGA 167 (194)
T ss_dssp HHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTS-EEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCH
T ss_pred HHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCccccccC-ceeeHHHHHHHHcCCCCCCHHHHHHHcCcCCCCCCCCCh
Confidence 999999999999999999999999999999872 32123 389999999999998888999999999999987668999
Q ss_pred HHHHHHHHHHHHHHHcCCCcc
Q psy8196 156 LLDAELLAEVYLAMTRGQSNL 176 (230)
Q Consensus 156 l~Da~~~a~v~~~l~~~~~~l 176 (230)
+.||.++++||.+|.++.+++
T Consensus 168 l~Da~~ta~l~~~l~~~~~~~ 188 (194)
T 2gui_A 168 LLDAQILAEVYLAMTGGQTSM 188 (194)
T ss_dssp HHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHhccchh
Confidence 999999999999999886654
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=5.5e-36 Score=241.79 Aligned_cols=165 Identities=32% Similarity=0.504 Sum_probs=149.8
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHh
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNY 81 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~f 81 (230)
+++++||+||||++|.. ++|||||+|.++++.+.. .|+.||+|..+++++++++||||++++.++|+|.+++.+|.+|
T Consensus 12 ~~~v~iD~ETTGl~~~~-~~IieIg~v~~~~g~i~~-~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 12 ATFVVLDFETTGLDPQV-DEIIEIGAVKIQGGQIVD-EYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp -CEEEEEEEESCSCTTT-CCEEEEEEEEEETTEEEE-EEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCC-CeEEEEEEEEEECCEEEE-EEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 47899999999999975 899999999999888764 7999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCHHHHHHH
Q psy8196 82 VSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAEL 161 (230)
Q Consensus 82 l~~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~Al~Da~~ 161 (230)
+++.++|+||+.||+.||++++.++|++.+. ..++||+.+++.+++..+++|++||++||++..+ .|+|+.||.+
T Consensus 90 l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~---~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~--~H~Al~Da~~ 164 (186)
T 2p1j_A 90 LEDSIIVAHNANFDYRFLRLWIKKVMGLDWE---RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR--HHRALDDARV 164 (186)
T ss_dssp SSSCEEEETTHHHHHHHHHHHHHHHHCCCCC---CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT--CCHHHHHHHH
T ss_pred HCCCEEEEECcHHHHHHHHHHHHHcCCCCCC---CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC--CcCHHHHHHH
Confidence 9999999999999999999999999986533 2489999999999854567999999999999876 6999999999
Q ss_pred HHHHHHHHHcCC
Q psy8196 162 LAEVYLAMTRGQ 173 (230)
Q Consensus 162 ~a~v~~~l~~~~ 173 (230)
+++||.+|....
T Consensus 165 t~~l~~~l~~~~ 176 (186)
T 2p1j_A 165 TAQVFLRFVEMM 176 (186)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 3
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=1.6e-35 Score=241.76 Aligned_cols=174 Identities=16% Similarity=0.251 Sum_probs=150.8
Q ss_pred CceEEEEecCCCCCCC---CCCceEEEEEEEEE--CCEEecceeEEEEcCCC--CCChhhHhhcCCCHHHHhCCCCHHHH
Q psy8196 2 HRHIVLDIETTGLNII---DGHRIIEIGCVEIK--NRQITGNNLHYYINPGR--DSEKSALAIHGLTTKFLKNKLKFSEI 74 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~---~~~~IieIg~v~~~--~~~~~~~~f~~~i~P~~--~i~~~a~~i~Git~e~l~~~~~~~ev 74 (230)
.++++||+||||+++. ..++|||||+|.++ ++++.+ .|+.+|+|.. .++++++++||||++++.++|+|.++
T Consensus 10 ~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~-~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 10 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED-TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEE-EEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEee-eeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 3689999999999972 23899999999997 566654 7999999998 89999999999999999999999999
Q ss_pred HHHHHHhcCCCe-------EEEEcccccHH-HHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCC--CCcHHHHHHHhC
Q psy8196 75 VDNFLNYVSNSE-------IIIHNAAFDVG-FLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGK--RNSLDALCDRYN 144 (230)
Q Consensus 75 ~~~~~~fl~~~~-------lV~hna~FD~~-~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~--~~~L~~L~~~~g 144 (230)
+.+|.+|+++.. +|+||+.||+. ||++++.++|++.+..++ .++||+.+++.++|.. +++|+++|++||
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~-~~~dt~~l~~~~~~~~~~~~~L~~l~~~~g 167 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAK-KWINIRKSYGNFYKVPRSQTKLTIMLEKLG 167 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGS-EEEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCccccc-ceEEHHHHHHHHhCCCCccchHHHHHHHcC
Confidence 999999998765 89999999997 999999999987443222 4899999999998853 469999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccc
Q psy8196 145 ISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178 (230)
Q Consensus 145 i~~~~r~~H~Al~Da~~~a~v~~~l~~~~~~l~~ 178 (230)
++..++ +|+|+.||.++++||.+|......+.+
T Consensus 168 i~~~~~-~H~Al~Da~~ta~l~~~l~~~~~~~~i 200 (204)
T 1w0h_A 168 MDYDGR-PHCGLDDSKNIARIAVRMLQDGCELRI 200 (204)
T ss_dssp CCCCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCCC-ccCcHHHHHHHHHHHHHHHHCCCeeee
Confidence 998753 799999999999999999987665544
No 4
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=1.1e-35 Score=249.50 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=142.8
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCE-------------------EecceeEEEEcCCCCCChhhHhhcCCCH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQ-------------------ITGNNLHYYINPGRDSEKSALAIHGLTT 62 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~-------------------~~~~~f~~~i~P~~~i~~~a~~i~Git~ 62 (230)
..||+||+||||+++.. ++|||||+|.++++. +. +.|+++|+|.+++++++.++||||+
T Consensus 12 ~~~vv~D~ETTGl~~~~-d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~li~P~~~i~~~~~~i~GIt~ 89 (242)
T 3mxm_B 12 QTLIFLDLEATGLPSSR-PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVV-DKLSLCIAPGKACSPGASEITGLSK 89 (242)
T ss_dssp SEEEEEEEEESSCGGGC-CCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCC-EEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred ceEEEEEeecCCCCCCC-CeeEEEEEEEecCCcccccccccccccccccccchh-heeEEEECCCCCCCHHHHHhcCCCH
Confidence 57999999999999986 999999999998652 22 3799999999999999999999999
Q ss_pred HHHhCC--CCHH-HHHHHHHHhcCC----CeEEEEcc-cccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHc----C
Q psy8196 63 KFLKNK--LKFS-EIVDNFLNYVSN----SEIIIHNA-AFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIH----T 130 (230)
Q Consensus 63 e~l~~~--~~~~-ev~~~~~~fl~~----~~lV~hna-~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~----p 130 (230)
+++.++ |+|. +++.+|.+|+++ ..+|+||+ .||+.||++++.++|++..... ..++||+.+++.++ |
T Consensus 90 ~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~-~~~iDtl~l~r~l~~~~~p 168 (242)
T 3mxm_B 90 AELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDG-TFCVDSIAALKALEQASSP 168 (242)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTT-CEEEEHHHHHHHHHHHHCC
T ss_pred HHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccC-CeEeehHHHHHHHHhhcCc
Confidence 999988 8996 999999999998 78999997 9999999999999998642111 13789999988764 4
Q ss_pred C-----CCCcHHHHHHH-hCCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy8196 131 G-----KRNSLDALCDR-YNISKIHRTLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 131 ~-----~~~~L~~L~~~-~gi~~~~r~~H~Al~Da~~~a~v~~~l~~ 171 (230)
+ .+++|++||++ ||++..+ +|+|+.||.+|++||+++..
T Consensus 169 ~~~~~~~~~~L~~l~~~~~gi~~~~--~H~Al~Da~ata~l~~~~~~ 213 (242)
T 3mxm_B 169 SGNGSRKSYSLGSIYTRLYWQAPTD--SHTAEGDDLTLLSICQWKPQ 213 (242)
T ss_dssp ------CCCSHHHHHHHHHSSCCSS--TTSHHHHHHHHHHHHTSSHH
T ss_pred cccCCCCCcCHHHHHHHHhCCCCCC--CcChHHHHHHHHHHHHHHHH
Confidence 2 45699999987 9999876 79999999999999997664
No 5
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=100.00 E-value=6.5e-35 Score=251.86 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=140.0
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCEE------------------ecceeEEEEcCCCCCChhhHhhcCCCHH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQI------------------TGNNLHYYINPGRDSEKSALAIHGLTTK 63 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~------------------~~~~f~~~i~P~~~i~~~a~~i~Git~e 63 (230)
..+|+||+||||+++.. ++|||||+|.++++.+ +.+.|+++|+|++.+++++.++||||++
T Consensus 12 ~tfVv~DlETTGL~~~~-d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 12 QTLIFLDLEATGLPSSR-PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp SEEEEEEEEESSCGGGC-CCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred CCEEEEEEECCCCCCCC-CeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 57999999999999886 9999999999986531 1247999999999999999999999999
Q ss_pred HHhCC--CCH-HHHHHHHHHhcCC----CeEEEEc-ccccHHHHHHHHHHcCCCCcccccchHhHHHHHHH----HHcCC
Q psy8196 64 FLKNK--LKF-SEIVDNFLNYVSN----SEIIIHN-AAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMAR----KIHTG 131 (230)
Q Consensus 64 ~l~~~--~~~-~ev~~~~~~fl~~----~~lV~hn-a~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar----~~~p~ 131 (230)
++.++ |.| .+++.+|.+|+++ ..+|+|| +.||+.||++++.++|++..... ..++||+.+.+ ..+|+
T Consensus 91 ~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~-~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 91 ELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDG-TFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTT-CEEEEHHHHHHHHHTTC---
T ss_pred HHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCC-ceEEeHHHHHHHHHHHhCcc
Confidence 99998 889 7999999999988 7899999 89999999999999998642111 12678877554 45664
Q ss_pred -----CCCcHHHHHHH-hCCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy8196 132 -----KRNSLDALCDR-YNISKIHRTLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 132 -----~~~~L~~L~~~-~gi~~~~r~~H~Al~Da~~~a~v~~~l~~ 171 (230)
.+++|++||++ ||++..+ +|+|+.||.+|++||+++..
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~~--aHrAl~DA~ata~lf~~l~~ 213 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPTD--SHTAEGHVLTLLSICQWKPQ 213 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCSC--SSSHHHHHHHHHHHHHSSHH
T ss_pred ccccCCCCCHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 46799999999 9999875 79999999999999997653
No 6
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=100.00 E-value=5.7e-34 Score=236.28 Aligned_cols=167 Identities=21% Similarity=0.344 Sum_probs=144.6
Q ss_pred ceEEEEecCCCCCCCCCCceEEEEEEEEE---CCEE-ecceeEEEEcC--CCCCChhhHhhcCCCHHH-HhCCCCHHHHH
Q psy8196 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIK---NRQI-TGNNLHYYINP--GRDSEKSALAIHGLTTKF-LKNKLKFSEIV 75 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~~IieIg~v~~~---~~~~-~~~~f~~~i~P--~~~i~~~a~~i~Git~e~-l~~~~~~~ev~ 75 (230)
++|+||+||||++|.. ++|||||+|.++ ++.+ ....|+.||+| ...++++++++||||+++ +.+++++.+++
T Consensus 30 ~~vviD~ETTGl~~~~-~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v~ 108 (224)
T 2f96_A 30 LPVVVDVETGGFNSAT-DALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAAL 108 (224)
T ss_dssp EEEEEEEEESSSCTTT-BCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHH
T ss_pred cEEEEEeeCCCCCCCC-CeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHH
Confidence 6799999999999985 899999999997 6664 35679999999 578999999999999985 88999999999
Q ss_pred HHHHHhcC---------CCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHhCCC
Q psy8196 76 DNFLNYVS---------NSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNIS 146 (230)
Q Consensus 76 ~~~~~fl~---------~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~gi~ 146 (230)
.+|.+|+. +..+|+||+.||++||++++.++|++..+.....++||+.+++.++|. .+|+.||++||++
T Consensus 109 ~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~~--~~L~~l~~~~gi~ 186 (224)
T 2f96_A 109 TEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQ--TVLAKACQAAGME 186 (224)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSC--CSHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcCC--CCHHHHHHHcCCC
Confidence 99999984 567999999999999999999999862111012489999999999874 5899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 147 KIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 147 ~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
..++.+|+|+.||.+|++||.+|..+
T Consensus 187 ~~~~~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 187 FDNREAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 76545899999999999999998865
No 7
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=235.75 Aligned_cols=171 Identities=16% Similarity=0.267 Sum_probs=145.9
Q ss_pred CceEEEEecCCCCCCCCC-CceEEEEEEEEECC--EEecceeEEEEcCCC--CCChhhHhhcCCCHHHHhCCCCHHHHHH
Q psy8196 2 HRHIVLDIETTGLNIIDG-HRIIEIGCVEIKNR--QITGNNLHYYINPGR--DSEKSALAIHGLTTKFLKNKLKFSEIVD 76 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~-~~IieIg~v~~~~~--~~~~~~f~~~i~P~~--~i~~~a~~i~Git~e~l~~~~~~~ev~~ 76 (230)
.++|+||+||||+++... ++|||||+|.++++ .+. +.|+.||+|.. .++++++++||||++++.++|+|.+++.
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~-~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIE-STFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEE-EEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEe-eeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHH
Confidence 468999999999998741 49999999999976 444 47999999987 8999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcc--------cccHHH-HHHHHHHcCCCCcccccchHhH---HHHHHHHHcCCCCCcHHHHHHHhC
Q psy8196 77 NFLNYVSNSEIIIHNA--------AFDVGF-LDMELSLLGYSNFTKYIYRITD---TLLMARKIHTGKRNSLDALCDRYN 144 (230)
Q Consensus 77 ~~~~fl~~~~lV~hna--------~FD~~~-L~~~l~~~g~~~~~~~~~~~iD---tl~lar~~~p~~~~~L~~L~~~~g 144 (230)
+|.+|+++..+|+||+ .||+.| |+.++.+.|++....+ ..++| ++.+++..+|. ++|+.||++||
T Consensus 110 ~f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~-~~~iD~~~~~~~~~~~~p~--~~L~~l~~~~g 186 (224)
T 2xri_A 110 RVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYF-KQWINLKKAYSFAMGCWPK--NGLLDMNKGLS 186 (224)
T ss_dssp HHHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGG-SCEEEHHHHHHHHHTSCCT--TTHHHHHHHTT
T ss_pred HHHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccc-cceEeHHHHHHHHhccCCC--CCHHHHHHHcC
Confidence 9999999999999999 999997 7899999998743322 23677 77777777764 68999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccc
Q psy8196 145 ISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177 (230)
Q Consensus 145 i~~~~r~~H~Al~Da~~~a~v~~~l~~~~~~l~ 177 (230)
++..+ .+|+|+.||.++++||.+|.+....+.
T Consensus 187 i~~~~-~~H~Al~DA~~ta~l~~~l~~~g~~~~ 218 (224)
T 2xri_A 187 LQHIG-RPHSGIDDCKNIANIMKTLAYRGFIFK 218 (224)
T ss_dssp CCCCS-CTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCC-CCcChHHHHHHHHHHHHHHHHcCCEEe
Confidence 99865 379999999999999999997655443
No 8
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=240.80 Aligned_cols=175 Identities=15% Similarity=0.217 Sum_probs=149.0
Q ss_pred CceEEEEecCCCCCC---CCCCceEEEEEEEEEC--CEEecceeEEEEcCCC--CCChhhHhhcCCCHHHHhCCCCHHHH
Q psy8196 2 HRHIVLDIETTGLNI---IDGHRIIEIGCVEIKN--RQITGNNLHYYINPGR--DSEKSALAIHGLTTKFLKNKLKFSEI 74 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~---~~~~~IieIg~v~~~~--~~~~~~~f~~~i~P~~--~i~~~a~~i~Git~e~l~~~~~~~ev 74 (230)
.++|+||+||||+++ ...++|||||+|.+++ +.+. ..|+.+|+|.. .++++++++||||++++.++|+|.++
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~-~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIE-DTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEE-EEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEe-eeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 468999999999973 1238999999999985 3555 47999999998 89999999999999999999999999
Q ss_pred HHHHHHhcCCC-------eEEEEcccccHH-HHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCC--CCcHHHHHHHhC
Q psy8196 75 VDNFLNYVSNS-------EIIIHNAAFDVG-FLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGK--RNSLDALCDRYN 144 (230)
Q Consensus 75 ~~~~~~fl~~~-------~lV~hna~FD~~-~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~--~~~L~~L~~~~g 144 (230)
+.+|.+|+++. .+|+||+.||+. ||+.++.++|++.....+. ++|+..+.+.+++.. +++|+.||++||
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~-~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSE-EEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccch-HHHHHHHHHHHhCCCCCCccHHHHHHHcC
Confidence 99999999875 899999999999 9999999999874333333 899988887776433 379999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccc
Q psy8196 145 ISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179 (230)
Q Consensus 145 i~~~~r~~H~Al~Da~~~a~v~~~l~~~~~~l~~~ 179 (230)
++..++ +|+|+.||.+|++||.+|......+.+.
T Consensus 236 i~~~g~-~H~Al~DA~ata~l~~~l~~~~~~~~~~ 269 (299)
T 1zbh_A 236 MDYDGR-PNCGLDDSKNIARIAVRMLQDGCELRIN 269 (299)
T ss_dssp CCCCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCC-CCChHHHHHHHHHHHHHHHHhCCcCChh
Confidence 998753 7999999999999999999775555443
No 9
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=100.00 E-value=3.7e-33 Score=232.84 Aligned_cols=167 Identities=21% Similarity=0.325 Sum_probs=146.1
Q ss_pred ceEEEEecCCCCCCCCCCceEEEEEEEEE---CCEE-ecceeEEEEcC--CCCCChhhHhhcCCCHH-HHhCCCCHHHHH
Q psy8196 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIK---NRQI-TGNNLHYYINP--GRDSEKSALAIHGLTTK-FLKNKLKFSEIV 75 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~~IieIg~v~~~---~~~~-~~~~f~~~i~P--~~~i~~~a~~i~Git~e-~l~~~~~~~ev~ 75 (230)
.+|+||+||||++|.. ++|||||+|.++ ++.+ ..+.|+.||+| ...++++++++||||++ ++.+++++.+++
T Consensus 38 ~~vviD~ETTGl~~~~-~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~vl 116 (235)
T 3v9w_A 38 YPVVIDVETAGFNAKT-DALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEAL 116 (235)
T ss_dssp EEEEEEEEESSSCTTT-BCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHHHH
T ss_pred cEEEEEEeCCCCCCCC-CeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHH
Confidence 5799999999999985 999999999987 6654 45689999999 57899999999999999 999999999999
Q ss_pred HHHHHhc---------CCCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHhCCC
Q psy8196 76 DNFLNYV---------SNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNIS 146 (230)
Q Consensus 76 ~~~~~fl---------~~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~gi~ 146 (230)
.+|.+|+ ++..+|+||++||+.||+.++.++|++..+.....++||+.+++.++|. .+|+.||++||++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p~--~~L~~l~~~~gi~ 194 (235)
T 3v9w_A 117 HEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQ--TVLSKACQTAGMD 194 (235)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHSC--CSHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhCC--CCHHHHHHHcCCC
Confidence 9999998 4567999999999999999999999862111112479999999999984 5899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 147 KIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 147 ~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
..++..|+|+.||.+|++||.+|..+
T Consensus 195 ~~~~~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 195 FDSTQAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp CCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 87555899999999999999999864
No 10
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=3e-33 Score=233.69 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=139.4
Q ss_pred CCceEEEEecCCCCCCCCCCceEEEEEEEEECC----------------EEecceeEEEEcCCCCCChhhHhhcCCCHHH
Q psy8196 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNR----------------QITGNNLHYYINPGRDSEKSALAIHGLTTKF 64 (230)
Q Consensus 1 M~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~----------------~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~ 64 (230)
|.++|+||+||||+++.. ++|||||+|.++++ ++. +.|+.+|+|..+++++++++||||+++
T Consensus 9 ~~~~v~iD~ETTGl~~~~-~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~-~~f~~lv~P~~~i~~~~~~i~GIt~~~ 86 (238)
T 1y97_A 9 AETFVFLDLEATGLPSVE-PEIAELSLFAVHRSSLENPEHDESGALVLPRVL-DKLTLCMCPERPFTAKASEITGLSSEG 86 (238)
T ss_dssp CSEEEEEEEEESSCGGGC-CCEEEEEEEEEEHHHHTSCBC---CCCBCCSSC-EEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred cCeEEEEEeeCCCcCCCC-CcEEEEEEEEecccccccccccccccccccccc-eeeEEEECCCCcCCHHHHHHhCCCHHH
Confidence 357999999999999875 89999999999864 333 469999999999999999999999999
Q ss_pred H--hCCCCH-HHHHHHHHHhcCC----CeEEEEcc-cccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHc-------
Q psy8196 65 L--KNKLKF-SEIVDNFLNYVSN----SEIIIHNA-AFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIH------- 129 (230)
Q Consensus 65 l--~~~~~~-~ev~~~~~~fl~~----~~lV~hna-~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~------- 129 (230)
+ .++|+| .+++..|.+|+++ ..+|+||+ .||+.||++++.++|++.... ..++||+.+++.++
T Consensus 87 l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~--~~~iDt~~l~~~~~~~~~p~~ 164 (238)
T 1y97_A 87 LARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRD--TVCLDTLPALRGLDRAHSHGT 164 (238)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTT--CEEEEHHHHHHHHHHHC----
T ss_pred HhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCC--CEEEEHHHHHHHHHhccCccc
Confidence 9 577999 4899999999986 67999999 999999999999999864321 23799999999987
Q ss_pred --CC-CCCcHHHHHHH-hCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 130 --TG-KRNSLDALCDR-YNISKIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 130 --p~-~~~~L~~L~~~-~gi~~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
|+ .+++|+++|++ ||++..+ +|+|+.||.++++||.++...
T Consensus 165 ~~p~~~~~~L~~l~~~~~gi~~~~--~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 165 RARGRQGYSLGSLFHRYFRAEPSA--AHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp ------CCSHHHHHHHHHSSCCC-----CHHHHHHHHHHHHHHTHHH
T ss_pred cCCCCCCCCHHHHHHHHhCCCCcc--CccHHHHHHHHHHHHHHHHHH
Confidence 65 45699999995 9999875 799999999999999998743
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=240.55 Aligned_cols=174 Identities=16% Similarity=0.246 Sum_probs=148.9
Q ss_pred CceEEEEecCCCCC----CCCCCceEEEEEEEEEC--CEEecceeEEEEcCCC--CCChhhHhhcCCCHHHHhCCCCHHH
Q psy8196 2 HRHIVLDIETTGLN----IIDGHRIIEIGCVEIKN--RQITGNNLHYYINPGR--DSEKSALAIHGLTTKFLKNKLKFSE 73 (230)
Q Consensus 2 ~~~ivlD~ETTGl~----~~~~~~IieIg~v~~~~--~~~~~~~f~~~i~P~~--~i~~~a~~i~Git~e~l~~~~~~~e 73 (230)
.++|+||+||||++ +. .++|||||+|.+++ +.+. ..|+.||+|.. .++++++++||||++++.++|+|.+
T Consensus 128 ~~~vviD~ETTGl~~~~~~~-~deIIEIgaV~vd~~~g~i~-~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~e 205 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEF-VHEIIEFPVVLLNTHTLEIE-DTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 205 (349)
T ss_dssp SEEEECCCEECCCTTCCTTC-CCCEEECCEEEEETTTTEEE-EEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHH
T ss_pred CeEEEEEEecCCCCCcCCCC-CCeEEEEEEEEEECCCceEe-EEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHH
Confidence 46899999999996 34 38999999999984 4555 47999999998 8999999999999999999999999
Q ss_pred HHHHHHHhcCCC-------eEEEEcccccHH-HHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCC--CCcHHHHHHHh
Q psy8196 74 IVDNFLNYVSNS-------EIIIHNAAFDVG-FLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGK--RNSLDALCDRY 143 (230)
Q Consensus 74 v~~~~~~fl~~~-------~lV~hna~FD~~-~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~--~~~L~~L~~~~ 143 (230)
++.+|.+|+++. .+|+||+.||+. ||+.++.++|++.....+. ++|+..+.+.+++.. +++|+.||++|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~-~iDt~~l~~~~~~~~~~~~~L~~l~~~~ 284 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKL 284 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSE-EEEHHHHHHHHHTCCGGGGSHHHHHHHT
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccch-HHHHHHHHHHHhcCCCCCCCHHHHHHHc
Confidence 999999999775 799999999999 9999999999864333344 899998887776433 36999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccc
Q psy8196 144 NISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179 (230)
Q Consensus 144 gi~~~~r~~H~Al~Da~~~a~v~~~l~~~~~~l~~~ 179 (230)
|++..++ +|+|+.||.++++||.+|......+.+.
T Consensus 285 gi~~~g~-~HrAl~DA~ata~ll~~ll~~~~~~~i~ 319 (349)
T 1zbu_A 285 GMDYDGR-PHCGLDDSKNIARIAVRMLQDGCELRIN 319 (349)
T ss_dssp TCCCCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 9998753 7999999999999999999775555443
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.98 E-value=2.1e-32 Score=237.04 Aligned_cols=173 Identities=14% Similarity=0.224 Sum_probs=147.6
Q ss_pred ceEEEEecCCCCCCCCCC---ceEEEEEEEEE--CCEEec-ceeEEEEcCCCC--CChhhHhhcCCCHHHHhCCCCHHHH
Q psy8196 3 RHIVLDIETTGLNIIDGH---RIIEIGCVEIK--NRQITG-NNLHYYINPGRD--SEKSALAIHGLTTKFLKNKLKFSEI 74 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~---~IieIg~v~~~--~~~~~~-~~f~~~i~P~~~--i~~~a~~i~Git~e~l~~~~~~~ev 74 (230)
++|+||+||||+++.. + +|||||+|.++ ++++.. +.|+.+|+|... ++++++++||||++++.++|+|.++
T Consensus 20 ~~vviD~ETTGl~~~~-d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~ev 98 (308)
T 3cg7_A 20 TLLILDFETTSDAANQ-DYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVV 98 (308)
T ss_dssp EEEEEEEEECCBTTBC-SCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHHH
T ss_pred eEEEEEeecCCCCCCC-CCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHHHH
Confidence 6899999999999874 5 99999999995 555542 269999999974 9999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEcc------cccH-HHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCC-------CCcHHHHH
Q psy8196 75 VDNFLNYVSNSEIIIHNA------AFDV-GFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGK-------RNSLDALC 140 (230)
Q Consensus 75 ~~~~~~fl~~~~lV~hna------~FD~-~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~-------~~~L~~L~ 140 (230)
+.+|.+|+++..+|+||+ .||+ .||++++.+.|++....+ ..++||+.+++.++|.. +++|++++
T Consensus 99 l~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~-~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~ 177 (308)
T 3cg7_A 99 YEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFF-RQYINLYKIFTNEMDRMGPKELSATTNIGKMN 177 (308)
T ss_dssp HHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGG-SEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHH
T ss_pred HHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhh-cceeeHHHHHHHHhccccccccccCcCHHHHH
Confidence 999999999887778887 9999 799999999998743322 24899999999887632 45899999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccc
Q psy8196 141 DRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178 (230)
Q Consensus 141 ~~~gi~~~~r~~H~Al~Da~~~a~v~~~l~~~~~~l~~ 178 (230)
++||++..++ +|+|+.||.++++||.+|......+.+
T Consensus 178 ~~~gi~~~~~-~HrAl~DA~ata~l~~~l~~~~~~~~i 214 (308)
T 3cg7_A 178 EYYDLPTIGR-AHDAMDDCLNIATILQRMINMGAKVTV 214 (308)
T ss_dssp HHTTCCCCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHcCCCCCCC-CcCHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 9999998763 699999999999999999876544443
No 13
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.97 E-value=2e-31 Score=242.59 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=142.5
Q ss_pred ceEEEEecCCCCCCCCCCceEEEEEEEEE-CCEEecceeEEEEcCCCCC--ChhhHhhcCCCHHHHhCCCCH-HHHHHHH
Q psy8196 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIK-NRQITGNNLHYYINPGRDS--EKSALAIHGLTTKFLKNKLKF-SEIVDNF 78 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~~IieIg~v~~~-~~~~~~~~f~~~i~P~~~i--~~~a~~i~Git~e~l~~~~~~-~ev~~~~ 78 (230)
++|++|+||||++|.. ++|||||+|.++ ++.+.++.|+.||+|..++ ++++..+||||++++.+++.+ .+++.+|
T Consensus 10 ~~vv~DlETTGl~p~~-d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 10 TFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp EEEEEEEEESSSCTTT-SCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CEEEEEEECCCCCCCC-CeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHH
Confidence 5899999999999986 999999999998 5666655599999999877 789999999999999987755 9999999
Q ss_pred HHhcC--CCeEEEEc-ccccHHHHHHHHHHcCCCCccccc---chHhHHHHHHHHHc---------C----CC-CCcHHH
Q psy8196 79 LNYVS--NSEIIIHN-AAFDVGFLDMELSLLGYSNFTKYI---YRITDTLLMARKIH---------T----GK-RNSLDA 138 (230)
Q Consensus 79 ~~fl~--~~~lV~hn-a~FD~~~L~~~l~~~g~~~~~~~~---~~~iDtl~lar~~~---------p----~~-~~~L~~ 138 (230)
.+|++ +..+|+|| +.||..||+.++.++|++++.... ...+||+.+++..+ | +. +++|+.
T Consensus 89 ~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~ 168 (482)
T 2qxf_A 89 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 168 (482)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHH
Confidence 99998 88899999 899999999999999987543110 23679998888765 2 32 459999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCc
Q psy8196 139 LCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175 (230)
Q Consensus 139 L~~~~gi~~~~r~~H~Al~Da~~~a~v~~~l~~~~~~ 175 (230)
||++||++..+ +|+|+.||.+|++||..+..+++.
T Consensus 169 L~~~~Gi~~~~--aHrAL~DA~aTa~l~~~l~~~~p~ 203 (482)
T 2qxf_A 169 LTKANGIEHSN--AHDAMADVYATIAMAKLVKTRQPR 203 (482)
T ss_dssp HHHHTTCCCC-----CTTHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHcCCCCCC--CCCHHHHHHHHHHHHHHHHHhChh
Confidence 99999999865 799999999999999998766543
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=4.8e-32 Score=219.23 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=127.7
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHh
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNY 81 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~f 81 (230)
+++++||+||||++|....+|+|||+|.. ++... |+.||+|..+++++++++||||++++.++|+|.+++.+|.+|
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~-~g~~i---~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~ 80 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNV-HGAVL---YDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQL 80 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECT-TCCEE---EEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHH
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeC-CCCEE---EeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHH
Confidence 58999999999999874247889999864 33333 899999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHH--HH--HcCC-CCCcHHHHHHH-hCCCCCCC-CCCC
Q psy8196 82 VSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMA--RK--IHTG-KRNSLDALCDR-YNISKIHR-TLHG 154 (230)
Q Consensus 82 l~~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~la--r~--~~p~-~~~~L~~L~~~-~gi~~~~r-~~H~ 154 (230)
+++.++|+||+.||+.||+.++ +. ..++||+.+. ++ .+|+ .+++|+.||++ ||++..++ ..|+
T Consensus 81 l~~~~lV~hn~~fD~~~L~~~~-----~~-----~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~ 150 (189)
T 1wlj_A 81 LKGKLVVGHDLKHDFQALKEDM-----SG-----YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHS 150 (189)
T ss_dssp HTTSEEEESSHHHHHHHTTCCC-----TT-----CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCC
T ss_pred HCCCEEEECCcHHHHHHHHHhC-----CC-----CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcC
Confidence 9999999999999999996432 21 1367887653 23 4565 45699999999 79998652 2799
Q ss_pred HHHHHHHHHHHHHHHHcC
Q psy8196 155 GLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 155 Al~Da~~~a~v~~~l~~~ 172 (230)
|+.||.+|++||.++...
T Consensus 151 Al~Da~ata~l~~~l~~~ 168 (189)
T 1wlj_A 151 SVEDARATMELYQISQRI 168 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999999999998744
No 15
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.97 E-value=4.1e-31 Score=213.09 Aligned_cols=154 Identities=24% Similarity=0.247 Sum_probs=126.2
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECC-EEecceeEEEEc-CC---CCCChhhHhhc---CCCHHHHhCCCCHHH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNR-QITGNNLHYYIN-PG---RDSEKSALAIH---GLTTKFLKNKLKFSE 73 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~-~~~~~~f~~~i~-P~---~~i~~~a~~i~---Git~e~l~~~~~~~e 73 (230)
.++|++|+||||++|.. ++|||||||..+++ .+.++.++.+|+ |. ..+++.+.++| |||++++.++|++.+
T Consensus 9 ~~~v~~D~ETTGL~p~~-d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~~e 87 (186)
T 3tr8_A 9 DNLIWLDLEMTGLDPER-DRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEVE 87 (186)
T ss_dssp TCEEEEEEEESSSCTTT-CCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCHHH
T ss_pred CcEEEEEEECCCCCCCC-CceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCHHH
Confidence 37999999999999985 99999999955443 344555777885 65 34577776665 999999999999999
Q ss_pred HHHHHHHhc------CCCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhH--HHH-HHHHHcCCCCCcHHHHHHHhC
Q psy8196 74 IVDNFLNYV------SNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD--TLL-MARKIHTGKRNSLDALCDRYN 144 (230)
Q Consensus 74 v~~~~~~fl------~~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iD--tl~-lar~~~p~~~~~L~~L~~~~g 144 (230)
++.+|.+|+ +++++|+||+.||++||++++.++|.. +. .+++| |+. ++|+++|+... |
T Consensus 88 v~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~-~~---~~~iDvsTl~elar~~~P~~~~---------~ 154 (186)
T 3tr8_A 88 AETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQF-FH---YRHLDVTTLKILAQRWAPQIAA---------A 154 (186)
T ss_dssp HHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHH-SC---SCEEEHHHHHHHHHHHCHHHHT---------T
T ss_pred HHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCC-CC---CcEEeHHHHHHHHHHHCccccc---------c
Confidence 999999999 788999999999999999999888743 21 24788 998 99999996321 6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy8196 145 ISKIHRTLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 145 i~~~~r~~H~Al~Da~~~a~v~~~l~~ 171 (230)
++... .|+|++||.++.+++.....
T Consensus 155 ~~~~~--~HrAl~Da~ati~~l~~y~~ 179 (186)
T 3tr8_A 155 HIKES--QHLALQDIRDSIEELRYYRA 179 (186)
T ss_dssp SCCCC--CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCC--CcChHHHHHHHHHHHHHHHH
Confidence 76655 79999999999999987664
No 16
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.97 E-value=4.3e-31 Score=211.71 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=127.7
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEEC-CEEecceeEEEEcCCCC----CChhhHh---hcCCCHHHHhCCCCHHH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKN-RQITGNNLHYYINPGRD----SEKSALA---IHGLTTKFLKNKLKFSE 73 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~-~~~~~~~f~~~i~P~~~----i~~~a~~---i~Git~e~l~~~~~~~e 73 (230)
+++|+||+||||++|.. ++|||||+|.+++ +.+.++.|+.+|+|..+ +++++.+ +||||++++.++|+|.+
T Consensus 5 ~~~v~iD~ETTGl~~~~-~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~~ 83 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPER-DRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDRE 83 (180)
T ss_dssp GCEEEEEEEESSSCTTT-CCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHH
T ss_pred CcEEEEEeeCCCCCCCC-CceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHHH
Confidence 47899999999999985 8999999998874 44555569999999864 4666755 58999999999999999
Q ss_pred HHHHHHHhcCC------CeEEEEcccccHHHHHHHHHHcCCCCcccccchHhH--HH-HHHHHHcCCCCCcHHHHHHHhC
Q psy8196 74 IVDNFLNYVSN------SEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD--TL-LMARKIHTGKRNSLDALCDRYN 144 (230)
Q Consensus 74 v~~~~~~fl~~------~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iD--tl-~lar~~~p~~~~~L~~L~~~~g 144 (230)
++.+|.+|+++ .++|+||+.||+.||++++.+++.+ +. ..++| |+ .++++++|... .|
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~-~~---~~~~d~~tl~~l~~~~~p~~~---------~~ 150 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-FH---YRYLDVSTLKELARRWKPEIL---------DG 150 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-SC---SCEEETHHHHHHHHHHCGGGG---------GG
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccC-CC---cceeeHHHHHHHHHHhChHhh---------hC
Confidence 99999999986 6899999999999999999887632 21 23678 88 48999888531 36
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 145 ISKIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 145 i~~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
++..+ +|+|+.||.+++++|..+...
T Consensus 151 i~~~~--~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 151 FTKQG--THQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp SCCCC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcC--CcCcHHHHHHHHHHHHHHHHH
Confidence 76544 799999999999999988643
No 17
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.5e-30 Score=209.98 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=124.7
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCE-EecceeEEEEcCCCCC----ChhhHhh---cCCCHHHHhCCCCHHH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQ-ITGNNLHYYINPGRDS----EKSALAI---HGLTTKFLKNKLKFSE 73 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~-~~~~~f~~~i~P~~~i----~~~a~~i---~Git~e~l~~~~~~~e 73 (230)
++++++|+||||++|.. ++|||||+|..++.. ..++.|+.+|+|.+++ ++++.++ ||||++++.++|+|.+
T Consensus 9 ~~~vviD~ETTGl~p~~-d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~e 87 (194)
T 2gbz_A 9 DRLIWIDLEMTGLDTDR-DSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQ 87 (194)
T ss_dssp CEEEEEEEEESCSCTTT-CCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHHH
T ss_pred CCEEEEEeECCCCCCCC-CccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHHH
Confidence 47999999999999985 999999999966553 4445799999998654 5555555 9999999999999999
Q ss_pred HHHHHHHhcCCCe------EEEEcccccHHHHHHHHHHcCCCCcccccchHhHHH---HHHHHHcCCCCCcHHHHHHHhC
Q psy8196 74 IVDNFLNYVSNSE------IIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL---LMARKIHTGKRNSLDALCDRYN 144 (230)
Q Consensus 74 v~~~~~~fl~~~~------lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl---~lar~~~p~~~~~L~~L~~~~g 144 (230)
++.+|.+|+++.. +|+||+.||+.||++++.+++.. +. .+.+|+. .+++.++|. +|+ +
T Consensus 88 v~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~-~~---~~~~d~~~l~~l~~~~~p~-------~~~--~ 154 (194)
T 2gbz_A 88 AEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERY-FH---YRNLDVSTIKELARRWAPA-------VAS--G 154 (194)
T ss_dssp HHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHH-SC---SCEEEHHHHHHHHHHHCGG-------GGT--T
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhccc-CC---CccccHHHHHHHHHHhCHH-------HHh--C
Confidence 9999999999887 99999999999999999887621 11 1356754 355666654 232 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy8196 145 ISKIHRTLHGGLLDAELLAEVYLAMTRGQ 173 (230)
Q Consensus 145 i~~~~r~~H~Al~Da~~~a~v~~~l~~~~ 173 (230)
++..+ .|+|+.||.+++++|..+...-
T Consensus 155 i~~~~--~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 155 FAKSS--AHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp CCCCS--CCSHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCC--CcccHHHHHHHHHHHHHHHHHh
Confidence 55444 7999999999999999988653
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.41 E-value=2.2e-12 Score=120.76 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=105.6
Q ss_pred ceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhc
Q psy8196 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYV 82 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl 82 (230)
.+++||+||||+++.. ++|++|+++. .++ -.+|+.+.... + |+ .+.+++.+++..|.+|+
T Consensus 27 ~~va~DtEttgl~~~~-~~iv~I~~~~-~~g------~~~yip~~~~~------~-~~-----~~~l~~~~vl~~L~~~L 86 (605)
T 2kfn_A 27 PVFAFDTETDSLDNIS-ANLVGLSFAI-EPG------VAAYIPVAHDY------L-DA-----PDQISRERALELLKPLL 86 (605)
T ss_dssp SSEEEEEEESCSCTTT-CCEEEEEEEE-ETT------EEEEEECCCCS------T-TC-----CCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEecCCCCccc-CceEEEEEEE-cCC------cEEEEeccccc------c-cc-----ccccCHHHHHHHHHHHH
Confidence 4699999999999875 8999999884 332 23455332210 0 11 23456888999999999
Q ss_pred CCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCC-CCcHHHHHHHh-CCCCC--------CC
Q psy8196 83 SNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGK-RNSLDALCDRY-NISKI--------HR 150 (230)
Q Consensus 83 ~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~-~~~L~~L~~~~-gi~~~--------~r 150 (230)
.+. .+|+||++||+.+|.+ +|+.... .++||+.++|.+.|+. +++|++||++| |+... ++
T Consensus 87 ~d~~i~kV~hnak~D~~~L~~----~Gi~l~~----~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~ 158 (605)
T 2kfn_A 87 EDEKALKVGQNLKYDRGILAN----YGIELRG----IAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGK 158 (605)
T ss_dssp TCTTSCEEESSHHHHHHHHHT----TTCCCCC----EEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSST
T ss_pred cCCCCeEEEECcHHHHHHHHH----CCCCCCC----ccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCc
Confidence 886 6899999999999863 6764322 3789999999999975 67999999999 87631 11
Q ss_pred C------------CCCHHHHHHHHHHHHHHHHcC
Q psy8196 151 T------------LHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 151 ~------------~H~Al~Da~~~a~v~~~l~~~ 172 (230)
+ .|-|..||..++++|..|...
T Consensus 159 ~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 159 NQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp TCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 145889999999999988765
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.31 E-value=2.7e-12 Score=102.89 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=91.2
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcC--CCCCChhhHh--hcCCCHHHHhCCCCHHHHHHH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINP--GRDSEKSALA--IHGLTTKFLKNKLKFSEIVDN 77 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P--~~~i~~~a~~--i~Git~e~l~~~~~~~ev~~~ 77 (230)
|.-+++|||+||..+. .++|+||+|.-++ +.||..... ....+++..+ +.++.........++.++..+
T Consensus 22 m~r~FlDTEFt~d~~~--~eLISIGlV~EdG-----rEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~ 94 (190)
T 4hec_A 22 MVRYFYDTEFIEDGHT--IELISIGVVAEDG-----REYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLD 94 (190)
T ss_dssp EEEEEEEEEEEECSSC--EEEEEEEEEETTS-----CEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHH
T ss_pred eeEEEEeeeecCCCCC--CCEEEEEEEcCCC-----CEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHH
Confidence 4568999999984333 7999999996333 457766542 1223333332 356654444445689999999
Q ss_pred HHHhcCCC-----eEEEEcccccHHHHHHHHHHcC-CC-CcccccchHhHHHHHHHHHcCCCCCcHHHHHHHh---CCCC
Q psy8196 78 FLNYVSNS-----EIIIHNAAFDVGFLDMELSLLG-YS-NFTKYIYRITDTLLMARKIHTGKRNSLDALCDRY---NISK 147 (230)
Q Consensus 78 ~~~fl~~~-----~lV~hna~FD~~~L~~~l~~~g-~~-~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~---gi~~ 147 (230)
|.+|+... .++++++.||..+|...+...+ +| ..+.++ ..|..+++.. .++.
T Consensus 95 L~~FL~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~lP~~~p~~~------------------~dlr~~~~~~g~~~lp~ 156 (190)
T 4hec_A 95 LEEFLRIDGTDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFT------------------RELRQLWEDRGCPRMPP 156 (190)
T ss_dssp HHHHTTTTSSCEEEEEESSCHHHHHHHHTTTSSGGGSCTTSCSSC------------------EEHHHHHHHTTCCCCCC
T ss_pred HHHHHHhcCCCCCEEEEecccccHHHHHHHhcccccCCcccchhh------------------HHHHHHHHHcCCCCCCC
Confidence 99999642 4899999999999865433221 22 111111 1233333333 3444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy8196 148 IHRTLHGGLLDAELLAEVYLAMTRGQS 174 (230)
Q Consensus 148 ~~r~~H~Al~Da~~~a~v~~~l~~~~~ 174 (230)
..+..|+||.||...+..|..+++++.
T Consensus 157 ~~~~~H~AL~DAR~n~~~~~~~~~~~~ 183 (190)
T 4hec_A 157 RPRDVHDALVDARDQLRRFRLITSTDD 183 (190)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCcCcHHHHHHHHHHHHHHhCccc
Confidence 445689999999999999999998753
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.15 E-value=3.5e-11 Score=114.27 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=92.6
Q ss_pred eEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhc-
Q psy8196 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYV- 82 (230)
Q Consensus 4 ~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl- 82 (230)
+|+|||||||+++.. ++|..|.++...+ +. . ..++|. ...+.++.|.+|+
T Consensus 1 ~vv~D~ETtGl~~~~-d~i~~iqi~~~~~----~~-~-~~~~p~----------------------~i~~~l~~L~~~l~ 51 (698)
T 1x9m_A 1 MIVSDIEANALLESV-TKFHCGVIYDYST----AE-Y-VSYRPS----------------------DFGAYLDALEAEVA 51 (698)
T ss_dssp CEEEEEEESSCGGGC-CCEEEEEEEETTT----TE-E-EEECGG----------------------GHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCCC-CEEEEEEEEecCC----Cc-E-EEEChH----------------------HHHHHHHHHHHHHh
Confidence 489999999999875 7765443332111 11 1 233432 1234566677777
Q ss_pred CCCeEEEEcc-cccHHHHHHHHHH---cCCCCcccccchHhHHHHHHHHHcCCC-CCcHHHHHHHh--------CC----
Q psy8196 83 SNSEIIIHNA-AFDVGFLDMELSL---LGYSNFTKYIYRITDTLLMARKIHTGK-RNSLDALCDRY--------NI---- 145 (230)
Q Consensus 83 ~~~~lV~hna-~FD~~~L~~~l~~---~g~~~~~~~~~~~iDtl~lar~~~p~~-~~~L~~L~~~~--------gi---- 145 (230)
.+..+|+||+ +||+.+|.+.+.+ .|+.... ..++||+.++|.+.|+. +++|++||++| |.
T Consensus 52 ~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~---~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~ 128 (698)
T 1x9m_A 52 RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPR---ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGE 128 (698)
T ss_dssp TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCG---GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHH
T ss_pred cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCC---CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccc
Confidence 4567999999 9999999876543 2653221 24899999999999965 56899998888 42
Q ss_pred ---CC----------CCCC--------------CCCHHHHHHHHHHHHHHHHcC
Q psy8196 146 ---SK----------IHRT--------------LHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 146 ---~~----------~~r~--------------~H~Al~Da~~~a~v~~~l~~~ 172 (230)
+. .+.. .|-|..||..+.++|..|...
T Consensus 129 ~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~ 182 (698)
T 1x9m_A 129 MKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 20 1100 356889999999999999875
No 21
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.80 E-value=6.7e-09 Score=95.71 Aligned_cols=117 Identities=8% Similarity=0.023 Sum_probs=91.8
Q ss_pred eEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhcC
Q psy8196 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYVS 83 (230)
Q Consensus 4 ~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl~ 83 (230)
.+++|||+.++++.. .+++.|++. .++ +.+ ++. .++..|.+|+.
T Consensus 12 ~valDtE~~~~~~~~-a~Lvgi~la--~~~----~a~--~i~---------------------------~~l~~l~~~l~ 55 (540)
T 4dfk_A 12 GAFVGFVLSRKEPMW-ADLLALAAA--RGG----RVH--RAP---------------------------EPYKALRDLKE 55 (540)
T ss_dssp TCEEEEEESSSCTTT-CCEEEEEEE--ETT----EEE--ECS---------------------------SHHHHHTTCSS
T ss_pred ceEEEEEecCCccCc-ccEEEEEEE--cCC----EEE--Eeh---------------------------hhHHHHHHHHc
Confidence 489999999999986 788877665 232 122 221 25678888998
Q ss_pred CCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q psy8196 84 NSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLA 163 (230)
Q Consensus 84 ~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~Al~Da~~~a 163 (230)
+..+|+||++||+. ++|++.. .++||+.++|.+.|+ +++|++||++|.... .|+|..||..+.
T Consensus 56 d~~kV~hn~K~Dl~-------~~Gi~~~-----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~----gk~a~~DA~~t~ 118 (540)
T 4dfk_A 56 ARGLLAKDLSVLAL-------REGLGLP-----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW----TEEAGERAALSE 118 (540)
T ss_dssp BCSTTHHHHHHHHH-------HTTCCCC-----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC----CSCHHHHHHHHH
T ss_pred CCCEEEeccHHHHH-------HcCCCCC-----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh----ccchHHHHHHHH
Confidence 87789999999997 5677532 278999999999999 889999999996432 378999999999
Q ss_pred HHHHHHHcCC
Q psy8196 164 EVYLAMTRGQ 173 (230)
Q Consensus 164 ~v~~~l~~~~ 173 (230)
++|..|...-
T Consensus 119 ~L~~~L~~~L 128 (540)
T 4dfk_A 119 RLFANLWGRL 128 (540)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 22
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.77 E-value=1.2e-07 Score=80.56 Aligned_cols=168 Identities=14% Similarity=0.246 Sum_probs=112.9
Q ss_pred ceEEEEecCCCCCCCC-C-------------------CceEEEEEEEEECCE--E---ecceeEEEEcCCCC-CChhhHh
Q psy8196 3 RHIVLDIETTGLNIID-G-------------------HRIIEIGCVEIKNRQ--I---TGNNLHYYINPGRD-SEKSALA 56 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~-~-------------------~~IieIg~v~~~~~~--~---~~~~f~~~i~P~~~-i~~~a~~ 56 (230)
.||++|||.+|+-... | -.||++|....+... + ....|+.+++|.++ ..++++.
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI~ 114 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIE 114 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHHH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHHHH
Confidence 5899999999984320 1 259999998886321 1 12357777777653 4555555
Q ss_pred h---cCCCHHHHh-CCCCHHHHHHHHHHh---c-CCCeEEEEcccccHHHHHHHHHHcCCCCc-cc-------ccchHhH
Q psy8196 57 I---HGLTTKFLK-NKLKFSEIVDNFLNY---V-SNSEIIIHNAAFDVGFLDMELSLLGYSNF-TK-------YIYRITD 120 (230)
Q Consensus 57 i---~Git~e~l~-~~~~~~ev~~~~~~f---l-~~~~lV~hna~FD~~~L~~~l~~~g~~~~-~~-------~~~~~iD 120 (230)
. +||.-+.+. .+-+..+..+.|... + .+-..|+|+..+|+++|-+.+....+|.- .. +-..++|
T Consensus 115 fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD 194 (285)
T 4gmj_B 115 LLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYD 194 (285)
T ss_dssp HHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEE
T ss_pred HHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhh
Confidence 4 788876654 555666555555442 1 33458899999999999888876556521 10 0012556
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 121 tl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
+-.+++... +.+.+|+.+++.+|++.-+ ..|.|-.|+.+|+.+|.+|...
T Consensus 195 ~K~l~~~~~-~l~ggL~~lA~~L~v~r~g-~~HqAGsDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 195 VKYLMKSCK-NLKGGLQEVAEQLELERIG-PQHQAGSDSLLTGMAFFKMREM 244 (285)
T ss_dssp HHHHGGGST-TCCSCHHHHHHHTTCCCCS-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-ccCChHHHHHHhCCCCCCC-CCCcchhHHHHHHHHHHHHHHH
Confidence 655554332 2344899999999999876 4899999999999999999753
No 23
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.43 E-value=2.8e-06 Score=70.76 Aligned_cols=168 Identities=14% Similarity=0.240 Sum_probs=111.4
Q ss_pred ceEEEEecCCCCCCCC-C-------------------CceEEEEEEEEEC-CEE----ecceeEEEEcCCCC-CChhhHh
Q psy8196 3 RHIVLDIETTGLNIID-G-------------------HRIIEIGCVEIKN-RQI----TGNNLHYYINPGRD-SEKSALA 56 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~-~-------------------~~IieIg~v~~~~-~~~----~~~~f~~~i~P~~~-i~~~a~~ 56 (230)
.||++|||.+|+.... | -.||++|....+. +.. ....|+.+.+.... ..++++.
T Consensus 25 ~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si~ 104 (252)
T 2d5r_A 25 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIE 104 (252)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHHH
T ss_pred CEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHHHH
Confidence 5899999999985221 1 4799999988873 221 12356666555433 3444443
Q ss_pred ---hcCCCHHHHh-CCCCHHHHHHHHHH---hcC-CCeEEEEcccccHHHHHHHHHHcCCCCc-c-------cccchHhH
Q psy8196 57 ---IHGLTTKFLK-NKLKFSEIVDNFLN---YVS-NSEIIIHNAAFDVGFLDMELSLLGYSNF-T-------KYIYRITD 120 (230)
Q Consensus 57 ---i~Git~e~l~-~~~~~~ev~~~~~~---fl~-~~~lV~hna~FD~~~L~~~l~~~g~~~~-~-------~~~~~~iD 120 (230)
-+||.-+... ++-++.+..+.+.. .+. +-..|++++.+|+++|-+.+....+|.. . .+-..++|
T Consensus 105 fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD 184 (252)
T 2d5r_A 105 LLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYD 184 (252)
T ss_dssp HHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEE
T ss_pred HHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhh
Confidence 4788876654 55566655555444 122 2358999999999999887765555521 0 00012566
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 121 tl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
+..+++... +...+|+.|++.+|+...+ ..|.|-.|+.+|+.+|.+|...
T Consensus 185 ~K~l~~~~~-~l~~gL~~la~~L~v~r~g-~~HqAGsDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 185 VKYLMKSCK-NLKGGLQEVAEQLELERIG-PQHQAGSDSLLTGMAFFKMREM 234 (252)
T ss_dssp HHHHGGGCT-TCCSSHHHHHHHHTCCCCS-STTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCCCHHHHHHHcCCCccC-cccchhhhHHHHHHHHHHHHHH
Confidence 665555432 2345899999999999876 4899999999999999999754
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.42 E-value=2.8e-06 Score=81.58 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=98.9
Q ss_pred ceEEEEecCCC---CCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHH
Q psy8196 3 RHIVLDIETTG---LNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFL 79 (230)
Q Consensus 3 ~~ivlD~ETTG---l~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~ 79 (230)
+.++||+||+| ++|.. ++|+.||++.-.++. .+. ..| +..+.+...+...+++..|.
T Consensus 136 ~ilsfDIEt~~~~~p~~~~-d~Ii~Is~~~~~~~~----~~t--~~~-------------i~~~~v~~~~~E~~LL~~f~ 195 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGT-GPILMISYADGSEAR----VIT--WKK-------------IDLPYVDVVSTEKEMIKRFL 195 (775)
T ss_dssp CEEEEEEEECCCTTCCTTC-SCEEEEEEECSSCEE----EEE--SSC-------------CCCSSEEECSCHHHHHHHHH
T ss_pred EEEEEEEEEcCCCCCCCCC-CcEEEEEEEecCCCe----eEe--ecc-------------ccccceEEcCCHHHHHHHHH
Confidence 67899999998 56665 899999976322111 110 011 11112334567788999999
Q ss_pred HhcCC---CeEEEEcc-cccHHHHHHHHHHcCCCCc-c-----------------ccc-chHhHHHHHHHHHcCCCCCcH
Q psy8196 80 NYVSN---SEIIIHNA-AFDVGFLDMELSLLGYSNF-T-----------------KYI-YRITDTLLMARKIHTGKRNSL 136 (230)
Q Consensus 80 ~fl~~---~~lV~hna-~FD~~~L~~~l~~~g~~~~-~-----------------~~~-~~~iDtl~lar~~~p~~~~~L 136 (230)
+++.. ..+|+||. .||+++|...+..+|++.. . .+. ...+|++...+....-.+++|
T Consensus 196 ~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL 275 (775)
T 1qht_A 196 RVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTL 275 (775)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCH
T ss_pred HHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCH
Confidence 98853 46999999 9999999988888887621 0 011 136799999998776667899
Q ss_pred HHHHH-HhCCCCCCC----------C-------CCCHHHHHHHHHHHHHHHH
Q psy8196 137 DALCD-RYNISKIHR----------T-------LHGGLLDAELLAEVYLAMT 170 (230)
Q Consensus 137 ~~L~~-~~gi~~~~r----------~-------~H~Al~Da~~~a~v~~~l~ 170 (230)
+++|+ .+|.....- + ..=.+.||.++..++..+.
T Consensus 276 ~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 276 EAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998 478765431 0 0113568888888876543
No 25
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.40 E-value=4.3e-06 Score=71.97 Aligned_cols=167 Identities=16% Similarity=0.251 Sum_probs=111.7
Q ss_pred ceEEEEecCCCCCCCC-C-------------------CceEEEEEEEEEC-CEE----ecceeEEEEcCCCC-CChhhHh
Q psy8196 3 RHIVLDIETTGLNIID-G-------------------HRIIEIGCVEIKN-RQI----TGNNLHYYINPGRD-SEKSALA 56 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~-~-------------------~~IieIg~v~~~~-~~~----~~~~f~~~i~P~~~-i~~~a~~ 56 (230)
.||++|||.+|+-... | -.||++|....+. +.. ....|+.+.+..+. ..+++++
T Consensus 46 ~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~~SI~ 125 (333)
T 2p51_A 46 PVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESIE 125 (333)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCCHHHHH
T ss_pred CEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHHHH
Confidence 5899999999986321 1 3689999988873 222 12356666655433 3444443
Q ss_pred ---hcCCCHHHHh-CCCCHHHHHHHHHH---hcCC-CeEEEEcccccHHHHHHHHHHcCCCCc-c-------cccchHhH
Q psy8196 57 ---IHGLTTKFLK-NKLKFSEIVDNFLN---YVSN-SEIIIHNAAFDVGFLDMELSLLGYSNF-T-------KYIYRITD 120 (230)
Q Consensus 57 ---i~Git~e~l~-~~~~~~ev~~~~~~---fl~~-~~lV~hna~FD~~~L~~~l~~~g~~~~-~-------~~~~~~iD 120 (230)
-+||.-+.+. ++-++.+..+.+.. .+.+ -.+|.+++.+|+++|-+.|....+|.- . .+-..++|
T Consensus 126 fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD 205 (333)
T 2p51_A 126 LLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYD 205 (333)
T ss_dssp HHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEE
T ss_pred HHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhh
Confidence 4788876654 55566655555543 1222 358999999999999877764445421 0 00012566
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy8196 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 121 tl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~Al~Da~~~a~v~~~l~~ 171 (230)
+-.+++... +...+|+.+++.+|+...+ ..|.|-.|+.+|+.+|.+|..
T Consensus 206 ~K~l~~~~~-~l~ggL~~lA~~L~v~Rig-~~HqAGsDSlLT~~~F~kl~~ 254 (333)
T 2p51_A 206 IKYIMKSVL-NNSKGLQDIADDLQIHRIG-PQHQAGSDALLTARIFFEIRS 254 (333)
T ss_dssp HHHHHTTTT-CCCCCHHHHHHHTTCCCCS-CTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cccCCHHHHHHHcCCCccC-cchhhhhHHHHHHHHHHHHHH
Confidence 666665543 2345899999999999877 489999999999999999975
No 26
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.25 E-value=1.2e-05 Score=68.05 Aligned_cols=169 Identities=17% Similarity=0.215 Sum_probs=110.9
Q ss_pred ceEEEEecCCCCCCC--------------------CCCceEEEEEEEEECC-EE-----ecceeEEEEcCCCC-CChhhH
Q psy8196 3 RHIVLDIETTGLNII--------------------DGHRIIEIGCVEIKNR-QI-----TGNNLHYYINPGRD-SEKSAL 55 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~--------------------~~~~IieIg~v~~~~~-~~-----~~~~f~~~i~P~~~-i~~~a~ 55 (230)
.||++|||.+|+-.. ..-.||++|....+.+ .. ....|+.+.+..+. ..++++
T Consensus 39 ~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~~SI 118 (289)
T 1uoc_A 39 NHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTESL 118 (289)
T ss_dssp CEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCCHHHH
T ss_pred CEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCccccccHHHH
Confidence 589999999998421 0147999999888732 21 12356666655433 344444
Q ss_pred ---hhcCCCHHHHh-CCCCHHHHHHHHHH--h-cC-CCeEEEEcccccHHHHHHHHHHcCCCCc-c-------cccchHh
Q psy8196 56 ---AIHGLTTKFLK-NKLKFSEIVDNFLN--Y-VS-NSEIIIHNAAFDVGFLDMELSLLGYSNF-T-------KYIYRIT 119 (230)
Q Consensus 56 ---~i~Git~e~l~-~~~~~~ev~~~~~~--f-l~-~~~lV~hna~FD~~~L~~~l~~~g~~~~-~-------~~~~~~i 119 (230)
+-+||.-+... ++-++.+..+.+.. . +. +-..|++++.||+++|-+.+....+|.. . .+-..++
T Consensus 119 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iy 198 (289)
T 1uoc_A 119 ELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFY 198 (289)
T ss_dssp HHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEE
T ss_pred HHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccce
Confidence 34788876554 55566655444443 1 12 2358999999999999877765455521 0 0111377
Q ss_pred HHHHHHHHHcC--C------------CCCcHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 120 DTLLMARKIHT--G------------KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 120 Dtl~lar~~~p--~------------~~~~L~~L~~~~gi~~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
|+-.+++.... + ...+|+.+++.+|++..+ ..|.|=.|+.+|+.+|.+|...
T Consensus 199 D~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g-~~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 199 DLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFS-IFTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp EHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCG-GGGSHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccC-cccccHHHHHHHHHHHHHHHHH
Confidence 88888776532 1 134899999999998877 4899999999999999999854
No 27
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.24 E-value=1e-06 Score=82.06 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=90.1
Q ss_pred ceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhc
Q psy8196 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYV 82 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl 82 (230)
.-..+|+||+|.++.. .+++.|++.. +. -.+||.+.. ..++..|..|+
T Consensus 30 ~~~aldtE~~~~~~~~-a~Lvgisla~--~~------~a~yIp~~~-----------------------~~~l~~Lk~lL 77 (592)
T 3pv8_A 30 DKAALVVEVVEENYHD-APIVGIAVVN--EH------GRFFLRPET-----------------------ALADPQFVAWL 77 (592)
T ss_dssp SEEEEEEECCSSSCTT-CCCCEEEEEE--TT------EEEEECHHH-----------------------HTTCHHHHHHH
T ss_pred cCcEEEEEEcCCccCc-ccEEEEEEEc--CC------ceEEEccch-----------------------hhHHHHHHHHH
Confidence 3468999999999986 7887776542 21 134553210 22445677788
Q ss_pred CCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCC-CCcHHHHHHHh-CCCCCC--------C
Q psy8196 83 SNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGK-RNSLDALCDRY-NISKIH--------R 150 (230)
Q Consensus 83 ~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~-~~~L~~L~~~~-gi~~~~--------r 150 (230)
.+. ..|+||++||+.+|. ++|+.... .++||+.++|.+.|+. +++|++|+++| |+.... .
T Consensus 78 ed~~i~KV~hn~K~Dl~vL~----~~Gi~l~g----~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~ 149 (592)
T 3pv8_A 78 GDETKKKSMFDSKRAAVALK----WKGIELCG----VSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGA 149 (592)
T ss_dssp TCTTSEEEESSHHHHHHHHH----HTTCCCCC----EEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGG
T ss_pred hCCCCeEEEechHHHHHHHH----HcCCCCCC----ccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccc
Confidence 664 589999999998875 56875322 3789999999999976 67999999998 443211 0
Q ss_pred ---------CCCCHHHHHHHHHHHHHHHHc
Q psy8196 151 ---------TLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 151 ---------~~H~Al~Da~~~a~v~~~l~~ 171 (230)
..+-|..||..+.++|..|..
T Consensus 150 ~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 150 KRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012356789999999987764
No 28
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.21 E-value=4.9e-06 Score=74.53 Aligned_cols=129 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred ceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhc
Q psy8196 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYV 82 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl 82 (230)
..|+|||||++..+.. .+++-|... .+ .-.++|.|-.. .+.+..|.+++
T Consensus 130 ~~vavDtE~~~~~~~~-~~l~lIQLa---~~-----~~~~lidpl~l----------------------~~~l~~L~~lL 178 (428)
T 3saf_A 130 QEFAVNLEHHSYRSFL-GLTCLMQIS---TR-----TEDFIIDTLEL----------------------RSDMYILNESL 178 (428)
T ss_dssp SEEEEEEEEECTTCSS-CEEEEEEEE---CS-----SCEEEEETTTT----------------------GGGGGGGHHHH
T ss_pred CeEEEEEEecCCCCCC-CeEEEEEEE---eC-----CcEEEEEeccc----------------------hhhHHHHHHHH
Confidence 4689999999888765 554433322 21 12345555321 01233455566
Q ss_pred CCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHh-CCCCCC---------C
Q psy8196 83 SNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRY-NISKIH---------R 150 (230)
Q Consensus 83 ~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~-gi~~~~---------r 150 (230)
.+. ..|+||+++|+.+|.+ .+|+... .++||+.+++.+.++ +++|+.|+++| |+.... |
T Consensus 179 ~dp~i~KV~H~~k~Dl~~L~~---~~Gi~~~-----~~fDT~lAa~lL~~~-~~gL~~Lv~~~Lg~~l~K~~~~sdW~~r 249 (428)
T 3saf_A 179 TDPAIVKVFHGADSDIEWLQK---DFGLYVV-----NMFDTHQAARLLNLG-RHSLDHLLKLYCNVDSNKQYQLADWRIR 249 (428)
T ss_dssp TCTTSEEEESSCHHHHHHHHH---HHCCCCS-----SEEEHHHHHHHTTCS-CCSHHHHHHHHHCCCCCCTTTTSCTTCS
T ss_pred cCCCceEEEeehHHHHHHHHH---HcCCCcC-----ceeechhHHHHhCCC-CCCHHHHHHHHcCCCCCccccccccccC
Confidence 554 3699999999988743 4676432 378999999999876 47999999887 655432 1
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHc
Q psy8196 151 T-----LHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 151 ~-----~H~Al~Da~~~a~v~~~l~~ 171 (230)
. .+-|..||..+.++|..|..
T Consensus 250 pLs~~q~~YAA~DA~~ll~L~~~L~~ 275 (428)
T 3saf_A 250 PLPEEMLSYARDDTHYLLYIYDKMRL 275 (428)
T ss_dssp SCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 13367899999999988864
No 29
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.20 E-value=2.4e-05 Score=69.25 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=96.8
Q ss_pred ceEEEEecCCC--CC-CCC-CCceEEEEEEEEECCEEecceeEE--EEcCC-CCCChh----hHhh--cCC---CHH---
Q psy8196 3 RHIVLDIETTG--LN-IID-GHRIIEIGCVEIKNRQITGNNLHY--YINPG-RDSEKS----ALAI--HGL---TTK--- 63 (230)
Q Consensus 3 ~~ivlD~ETTG--l~-~~~-~~~IieIg~v~~~~~~~~~~~f~~--~i~P~-~~i~~~----a~~i--~Gi---t~e--- 63 (230)
+.+.||+||+| ++ |.. .++|+.|+++...++. +.. +++++ ....+. +..+ ..+ ...
T Consensus 107 ~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (388)
T 1noy_A 107 RVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDR-----FYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILD 181 (388)
T ss_dssp CEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTE-----EEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHT
T ss_pred EEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCe-----EEEEEEeeccCCCCCccccccccccccccccccccccCC
Confidence 67899999997 22 211 2689999987544432 222 24332 111111 0100 011 111
Q ss_pred HH--hCCCCHHHHHHHHHHhcC---CCeEEEEcc-cccHHHHHHHHHH-cCC---C---Ccc-----------------c
Q psy8196 64 FL--KNKLKFSEIVDNFLNYVS---NSEIIIHNA-AFDVGFLDMELSL-LGY---S---NFT-----------------K 113 (230)
Q Consensus 64 ~l--~~~~~~~ev~~~~~~fl~---~~~lV~hna-~FD~~~L~~~l~~-~g~---~---~~~-----------------~ 113 (230)
.+ ...+...+++..|.+++. ...++|||. .||+++|..-+.. +|+ + ++. .
T Consensus 182 ~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~ 261 (388)
T 1noy_A 182 RVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYS 261 (388)
T ss_dssp TEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEE
Confidence 11 234567889999999984 345888999 9999999776665 552 1 011 0
Q ss_pred ccch-HhHHHHHHHHH-cC-CCCCcHHHHHH-HhCCCCCCCCCCC----------------HHHHHHHHHHHHHHH
Q psy8196 114 YIYR-ITDTLLMARKI-HT-GKRNSLDALCD-RYNISKIHRTLHG----------------GLLDAELLAEVYLAM 169 (230)
Q Consensus 114 ~~~~-~iDtl~lar~~-~p-~~~~~L~~L~~-~~gi~~~~r~~H~----------------Al~Da~~~a~v~~~l 169 (230)
+..+ ++|++.+.+.+ +. -.+++|+++|+ .+|..... .+. .+.||.++.++|.++
T Consensus 262 i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d--~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 262 IDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLP--YDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCC--CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCC--cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 78999999985 55 55779999998 55665433 112 477999999999874
No 30
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.7e-05 Score=74.23 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=100.2
Q ss_pred ceEEEEecCCC---CC--CCCCCceEEEEEEEEECCEEec-ceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHH
Q psy8196 3 RHIVLDIETTG---LN--IIDGHRIIEIGCVEIKNRQITG-NNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVD 76 (230)
Q Consensus 3 ~~ivlD~ETTG---l~--~~~~~~IieIg~v~~~~~~~~~-~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~ 76 (230)
+.+.||+||++ .. |.. +.||.|+++....+.... ......+.+..++ ....+...+...+++.
T Consensus 250 rilSfDIEt~~~~g~fP~~~~-D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~----------~~~~V~~~~sE~eLL~ 318 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEY-DPVIQIANVVSIAGAKKPFIRNVFTLNTCSPI----------TGSMIFSHATEEEMLS 318 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTT-CCEEEEEEEEEETTCSSCSEEEEEEESCCCCB----------TTBEEEEESSHHHHHH
T ss_pred eEEEEEEEECCCCCCCCCCCC-CcEEEEEEEEecCCCcccceeEEEEecCCCCC----------CCCeEEECCCHHHHHH
Confidence 67899999984 22 344 899999988765442210 0011122322111 1112334467789999
Q ss_pred HHHHhcCC---CeEEEEcc-cccHHHHHHHHHHcCCCCcc------------------------------cccc-hHhHH
Q psy8196 77 NFLNYVSN---SEIIIHNA-AFDVGFLDMELSLLGYSNFT------------------------------KYIY-RITDT 121 (230)
Q Consensus 77 ~~~~fl~~---~~lV~hna-~FD~~~L~~~l~~~g~~~~~------------------------------~~~~-~~iDt 121 (230)
.|.+|+.. ..+++||. .||+++|..-+..+|++.+. .+.. .++|+
T Consensus 319 ~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lDl 398 (919)
T 3iay_A 319 NWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDL 398 (919)
T ss_dssp HHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEEH
T ss_pred HHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEEEh
Confidence 99999853 56899999 99999998888888765211 0111 26899
Q ss_pred HHHHHHHcCCCCCcHHHHHHHh-CCCCCCC---C----C-CC----------HHHHHHHHHHHHHHH
Q psy8196 122 LLMARKIHTGKRNSLDALCDRY-NISKIHR---T----L-HG----------GLLDAELLAEVYLAM 169 (230)
Q Consensus 122 l~lar~~~p~~~~~L~~L~~~~-gi~~~~r---~----~-H~----------Al~Da~~~a~v~~~l 169 (230)
+...+..++-.+++|+++|+.+ |....+- . . .+ .+.||.++.++|.++
T Consensus 399 ~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 399 LQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp HHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777788999999886 5433210 0 0 01 257999999988875
No 31
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.96 E-value=3.1e-05 Score=62.29 Aligned_cols=88 Identities=13% Similarity=-0.067 Sum_probs=64.4
Q ss_pred HHHHhcCCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhH-HHHHHHHHcCCCCCcHHHHHHHh-CCCCC----
Q psy8196 77 NFLNYVSNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD-TLLMARKIHTGKRNSLDALCDRY-NISKI---- 148 (230)
Q Consensus 77 ~~~~fl~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iD-tl~lar~~~p~~~~~L~~L~~~~-gi~~~---- 148 (230)
.|.+++.+. ..|+||+++|+..|.+ .+|+... . ++| |+.+++.+.|..+++|+.|+++| |....
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~---~~gi~~~----~-~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~ 158 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLR---DFDVKLE----S-FVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKS 158 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHH---HHCCCCC----S-EEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHH
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHH---HCCCCCC----C-EEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCC
Confidence 456677653 5799999999988853 2566422 2 789 88888988886677999999998 75441
Q ss_pred -------CCC-----CCCHHHHHHHHHHHHHHHHcC
Q psy8196 149 -------HRT-----LHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 149 -------~r~-----~H~Al~Da~~~a~v~~~l~~~ 172 (230)
.|. .+-|..||..+.++|..|...
T Consensus 159 ~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 159 IRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp HHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 122678999999999998865
No 32
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.94 E-value=3.6e-05 Score=67.72 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=64.8
Q ss_pred HHHHHhcCCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHh-CCCCCCC--
Q psy8196 76 DNFLNYVSNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRY-NISKIHR-- 150 (230)
Q Consensus 76 ~~~~~fl~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~-gi~~~~r-- 150 (230)
..|.+++.+. ..|+||+++|+.+|.+ .+|+.+. .++||+.+++.+.|+.+++|+.|+++| |+.....
T Consensus 64 ~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~---~~Gi~~~-----~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~ 135 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHAGSEDLEVFLN---VFGELPQ-----PLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSES 135 (375)
T ss_dssp HHHHHHHHCTTSEEEESSCHHHHHHHHH---HHSSCCS-----SEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHcCCCceEEEeeHHHHHHHHHH---HcCCCCC-----cEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcc
Confidence 3455666543 4799999999998863 3576432 378999999999987678999999988 7654321
Q ss_pred -------C-----CCCHHHHHHHHHHHHHHHHcC
Q psy8196 151 -------T-----LHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 151 -------~-----~H~Al~Da~~~a~v~~~l~~~ 172 (230)
. .+-|..||..+..+|..|...
T Consensus 136 ~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 136 RTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 (375)
T ss_dssp TSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112668999999999988643
No 33
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.79 E-value=0.00013 Score=64.97 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=63.4
Q ss_pred HHHHhcCCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHh-CCCCCCC---
Q psy8196 77 NFLNYVSNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRY-NISKIHR--- 150 (230)
Q Consensus 77 ~~~~fl~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~-gi~~~~r--- 150 (230)
.|.+++.+. ..|+||+++|+.+|.+ .+|+... . ++||+.+++.+.++ +++|+.|+++| |+.....
T Consensus 150 ~L~~lL~d~~i~KV~h~~k~Dl~~L~~---~~Gi~~~----~-~fDt~lAa~LL~~~-~~~L~~L~~~~lg~~l~K~~~~ 220 (410)
T 2hbj_A 150 ILNEVFTNPSIVKVFHGAFMDIIWLQR---DLGLYVV----G-LFDTYHASKAIGLP-RHSLAYLLENFANFKTSKKYQL 220 (410)
T ss_dssp GGHHHHTCTTSEEEESSCHHHHHHHHH---HHCCCCS----S-EEEHHHHHHHHTCS-CCSHHHHHHHHSCCCCCCTTTT
T ss_pred HHHHHHcCCCceEEEEehHHHHHHHHH---HcCCCcC----C-EEEcHHHHHHhCCC-ccCHHHHHHHHcCCCCCccccc
Confidence 455667653 4799999999998853 2576432 2 78999999999886 67999999998 6654321
Q ss_pred ------C-----CCCHHHHHHHHHHHHHHHHcC
Q psy8196 151 ------T-----LHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 151 ------~-----~H~Al~Da~~~a~v~~~l~~~ 172 (230)
. .+=|..||..+..+|..|...
T Consensus 221 sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 221 ADWRIRPLSKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp SCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112678999999999887644
No 34
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.77 E-value=0.00038 Score=69.48 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=97.5
Q ss_pred ceEEEEecCCCC--C----CC---CCCceEEEEEEEEECCEEecceeEEEEcCCCCCChh---hHhhcCCCHHHHhCCCC
Q psy8196 3 RHIVLDIETTGL--N----II---DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKS---ALAIHGLTTKFLKNKLK 70 (230)
Q Consensus 3 ~~ivlD~ETTGl--~----~~---~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~---a~~i~Git~e~l~~~~~ 70 (230)
+.+.||+||++. + |. ..+.||.|+++....+.........+.......+.. ..+-.++....+...+.
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~~~s 400 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFDS 400 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEEESS
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEecCC
Confidence 678999999753 1 11 137899999987642211100111111111111111 01111111112334467
Q ss_pred HHHHHHHHHHhcC---CCeEEEEcc-cccHHHHHHHH-HHcCCCC--cc------------------------cccc-hH
Q psy8196 71 FSEIVDNFLNYVS---NSEIIIHNA-AFDVGFLDMEL-SLLGYSN--FT------------------------KYIY-RI 118 (230)
Q Consensus 71 ~~ev~~~~~~fl~---~~~lV~hna-~FD~~~L~~~l-~~~g~~~--~~------------------------~~~~-~~ 118 (230)
..+++..|.+++. ...+++||. .||+++|..-+ ..+|++. +. .+.. .+
T Consensus 401 E~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~ 480 (1193)
T 2gv9_A 401 EFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVN 480 (1193)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTBEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcCeEe
Confidence 7899999999985 346999999 99999997764 4445431 10 0111 36
Q ss_pred hHHHHHHHHHcCCCCCcHHHHHHH-hCCCCCCCC------------------CCCHHHHHHHHHHHHHHH
Q psy8196 119 TDTLLMARKIHTGKRNSLDALCDR-YNISKIHRT------------------LHGGLLDAELLAEVYLAM 169 (230)
Q Consensus 119 iDtl~lar~~~p~~~~~L~~L~~~-~gi~~~~r~------------------~H~Al~Da~~~a~v~~~l 169 (230)
+|++.+.+...+-.+++|+++|+. +|....+-. .+=.+.||.++.++|.++
T Consensus 481 lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 481 IDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 799988888777778899999986 565443210 011246888999888876
No 35
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.72 E-value=6e-05 Score=72.98 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=91.7
Q ss_pred ceEEEEecC-CCC---CCCC---CCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHH
Q psy8196 3 RHIVLDIET-TGL---NIID---GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIV 75 (230)
Q Consensus 3 ~~ivlD~ET-TGl---~~~~---~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~ 75 (230)
+.++||+|| ||. -|.. .++||+||++. .++. .-.+.+++... +..... |....+...+...+++
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~-~~g~----~~~~~~~~~~~-~~~~~~---i~~~~v~~~~~E~~LL 261 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAG-SDGL----KKVLVLNRNDV-NEGSVK---LDGISVERFNTEYELL 261 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEE-TTSC----EEEEEECSSCC-CCCCEE---ETTEEEEEESSHHHHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEc-cCCC----cEEEEEeCCcc-cccccC---CCCCeEEEeCCHHHHH
Confidence 679999999 742 2221 26899999862 2211 12234454321 111111 1111233346788999
Q ss_pred HHHHHhcCCCe-EEEEcc-cccHHHHHHHHHHcCCCC----ccc--------ccchHhHHHHHHHH-----H-cC--CCC
Q psy8196 76 DNFLNYVSNSE-IIIHNA-AFDVGFLDMELSLLGYSN----FTK--------YIYRITDTLLMARK-----I-HT--GKR 133 (230)
Q Consensus 76 ~~~~~fl~~~~-lV~hna-~FD~~~L~~~l~~~g~~~----~~~--------~~~~~iDtl~lar~-----~-~p--~~~ 133 (230)
..|.+|+.+.. +++||. .||+++|...+.++|++. +.. .....+|.+...+. . +. -.+
T Consensus 262 ~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~s 341 (847)
T 1s5j_A 262 GRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNE 341 (847)
T ss_dssp HHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSS
T ss_pred HHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccccccc
Confidence 99999997654 899999 999999999999998852 210 01124676655431 1 22 136
Q ss_pred CcHHHHHHH-hCCCCCCC--CC---------CCHHHHHHHHHHHH
Q psy8196 134 NSLDALCDR-YNISKIHR--TL---------HGGLLDAELLAEVY 166 (230)
Q Consensus 134 ~~L~~L~~~-~gi~~~~r--~~---------H~Al~Da~~~a~v~ 166 (230)
++|+++|+. +|...... .. .=.+.||.++.+++
T Consensus 342 ysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 342 YNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 699999995 46543321 00 11356999988884
No 36
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=97.61 E-value=0.0005 Score=61.71 Aligned_cols=88 Identities=27% Similarity=0.337 Sum_probs=64.9
Q ss_pred HHHHHHhcCCCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHh-CCCCCC----
Q psy8196 75 VDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRY-NISKIH---- 149 (230)
Q Consensus 75 ~~~~~~fl~~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~-gi~~~~---- 149 (230)
+..|.+++.+...|+||+++|+..|+ .+|+.+. .++||+.+++.+.++ +++|+.|++.| |.....
T Consensus 84 l~~L~~lL~d~~KV~h~~k~Dl~~L~----~~gi~~~-----~~fDt~lAa~lL~~~-~~gL~~L~~~~lg~~~~K~~~~ 153 (440)
T 3cym_A 84 WNDFNRAVGDAVWILHDSLQDLPGFD----ELGMEPQ-----RLFDTEIAARLLGLK-RFGLAAVTEHFLGLTLAKEHSA 153 (440)
T ss_dssp HHHHHHHHTTCEEEESSHHHHHHHHH----HHTCCCC-----EEEEHHHHHHHTTCS-SCSHHHHHHHHHCEECCCCCTT
T ss_pred HHHHHHHHCCCCEEEEcCHHHHHHHH----HcCCcCC-----ceehHHHHHHHhCCC-CCCHHHHHHHHhCCCccccccc
Confidence 34566677776789999999998874 4566432 378999999999885 78999999998 643221
Q ss_pred -----CC-----CCCHHHHHHHHHHHHHHHHcC
Q psy8196 150 -----RT-----LHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 150 -----r~-----~H~Al~Da~~~a~v~~~l~~~ 172 (230)
|. ..-|..||..+.++|..|...
T Consensus 154 sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 154 ADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122778999999999887643
No 37
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=97.26 E-value=0.0023 Score=62.04 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=95.9
Q ss_pred CceEEEEecCCCCC--C--C-CCCceEEEEEEEEECCEEecceeEEE---EcCCCCCChhhHh---------hcCCCHHH
Q psy8196 2 HRHIVLDIETTGLN--I--I-DGHRIIEIGCVEIKNRQITGNNLHYY---INPGRDSEKSALA---------IHGLTTKF 64 (230)
Q Consensus 2 ~~~ivlD~ETTGl~--~--~-~~~~IieIg~v~~~~~~~~~~~f~~~---i~P~~~i~~~a~~---------i~Git~e~ 64 (230)
.|.+.||+|++.-+ | . -.++|+.|++.--.+. .+..+ -.|.....++... -..+..+.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDD-----RFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEI 182 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTT-----EEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCC-----EEEEEEeecccccccccccccccccccccccccccccc
Confidence 46789999997522 1 1 1278999998743332 23332 2232222221111 12233343
Q ss_pred HhC-----CCCHHHHHHHHHHhcC---CCeEEEEcc-cccHHHHHHHHHH-cCCC------Cccc---------------
Q psy8196 65 LKN-----KLKFSEIVDNFLNYVS---NSEIIIHNA-AFDVGFLDMELSL-LGYS------NFTK--------------- 113 (230)
Q Consensus 65 l~~-----~~~~~ev~~~~~~fl~---~~~lV~hna-~FD~~~L~~~l~~-~g~~------~~~~--------------- 113 (230)
+.+ -+...+++..|.+|+. ...++|||. .||+++|..-+.. +|++ .+..
T Consensus 183 ~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~ 262 (903)
T 3qex_A 183 IDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREI 262 (903)
T ss_dssp HTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCcee
Confidence 332 3567889999999885 345788999 9999999776665 4531 1110
Q ss_pred --ccc-hHhHHHHHHHHH-c-CCCCCcHHHHHHHh-CCCCCCCCCCC----------------HHHHHHHHHHHHHH
Q psy8196 114 --YIY-RITDTLLMARKI-H-TGKRNSLDALCDRY-NISKIHRTLHG----------------GLLDAELLAEVYLA 168 (230)
Q Consensus 114 --~~~-~~iDtl~lar~~-~-p~~~~~L~~L~~~~-gi~~~~r~~H~----------------Al~Da~~~a~v~~~ 168 (230)
+.. .++|++.+.+.. + +..+++|+++|+.+ |..... .|. .+.||.++.++|.+
T Consensus 263 ~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d--~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 263 ITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLK--YDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCC--CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccc--cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 268999888874 3 44567999999887 433322 221 15699999999876
No 38
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.17 E-value=0.0043 Score=59.53 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=90.3
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcC-CCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHH
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINP-GRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLN 80 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P-~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~ 80 (230)
.|.+.||+|+.+ . ..|+.||.. ..+ . + --+.+.+ +.+.+ +..-.+..-+...+++..|.+
T Consensus 153 lrilsfDIE~~~----~-g~i~~I~~~--~~~--~-~-~v~~l~~~~~~~~--------~~~~~V~~f~~E~~lL~~f~~ 213 (786)
T 3k59_A 153 LKWVSIDIETTR----H-GELYCIGLE--GCG--Q-R-IVYMLGPENGDAS--------SLDFELEYVASRPQLLEKLNA 213 (786)
T ss_dssp CCEEEEEEEECT----T-SCEEEEEEE--ETT--E-E-EEEEESSCCSCCT--------TCSSEEEEESSHHHHHHHHHH
T ss_pred CeEEEEEEEEcC----C-CCEEEEEec--CCC--C-C-eEEEEecCCCCCC--------CCCceEEEeCCHHHHHHHHHH
Confidence 378999999993 2 368888843 221 1 1 1122222 11100 001112223466789999999
Q ss_pred hcCC---CeEEEEcc-cccHHHHHHHHHHcCCCC-cc--------------------ccc-chHhHHHHHHHH-HcCCCC
Q psy8196 81 YVSN---SEIIIHNA-AFDVGFLDMELSLLGYSN-FT--------------------KYI-YRITDTLLMARK-IHTGKR 133 (230)
Q Consensus 81 fl~~---~~lV~hna-~FD~~~L~~~l~~~g~~~-~~--------------------~~~-~~~iDtl~lar~-~~p~~~ 133 (230)
++.. ..+++||. .||+++|..-+..+|++. +. .+. ..++|.+.+.+. .++-.+
T Consensus 214 ~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~S 293 (786)
T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC
T ss_pred HHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCC
Confidence 8853 46899999 999999988888777651 10 000 126788888776 355567
Q ss_pred CcHHHHHHHh-CCCCCCCCCC-------------------CHHHHHHHHHHHHHHH
Q psy8196 134 NSLDALCDRY-NISKIHRTLH-------------------GGLLDAELLAEVYLAM 169 (230)
Q Consensus 134 ~~L~~L~~~~-gi~~~~r~~H-------------------~Al~Da~~~a~v~~~l 169 (230)
++|+++|+.+ |........| =.+.||.++.++|.++
T Consensus 294 ysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 294 FSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999996 4433210111 0257999999998874
No 39
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.73 E-value=0.0017 Score=59.31 Aligned_cols=98 Identities=24% Similarity=0.246 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHHHHcCCCCc-c-------cccchHhHHHHHHHHH--cC-CCCCcHHHH
Q psy8196 71 FSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-T-------KYIYRITDTLLMARKI--HT-GKRNSLDAL 139 (230)
Q Consensus 71 ~~ev~~~~~~fl~~~~lV~hna~FD~~~L~~~l~~~g~~~~-~-------~~~~~~iDtl~lar~~--~p-~~~~~L~~L 139 (230)
|..+++.+.+ .+.++|+||.-+|+.+|-+.|. ..+|.. . .+-..++||-.++... .. ....+|..|
T Consensus 265 fr~v~~~L~~--~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l 341 (507)
T 3d45_A 265 FSRVIHAIAN--SGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAEL 341 (507)
T ss_dssp THHHHHHHHH--HCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHH
T ss_pred HHHHHHHHHh--CCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHH
Confidence 4444444433 4668999999999999977664 234411 0 0001378887776531 11 124589999
Q ss_pred HHHhCC-----CC------------CCCCCCCHHHHHHHHHHHHHHHHc
Q psy8196 140 CDRYNI-----SK------------IHRTLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 140 ~~~~gi-----~~------------~~r~~H~Al~Da~~~a~v~~~l~~ 171 (230)
.+.+.- +. .....|.|=.||.+|+.||.+|..
T Consensus 342 ~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~ 390 (507)
T 3d45_A 342 EKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 390 (507)
T ss_dssp HHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 999862 22 112479999999999999999864
No 40
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=96.69 E-value=0.0024 Score=59.13 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=79.7
Q ss_pred CceEEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCCCCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHh
Q psy8196 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNY 81 (230)
Q Consensus 2 ~~~ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~f 81 (230)
.+.+++|+||+. ++.+ +.++-+|+. +++.. ..|+. . .. +.+|.+|
T Consensus 6 ~~i~~~D~Et~~-d~~~-~~~~~i~~~--~~~~~--~~~~~--~-----------------------~~----l~~fi~~ 50 (575)
T 2py5_A 6 RKMYSCAFETTT-KVED-CRVWAYGYM--NIEDH--SEYKI--G-----------------------NS----LDEFMAW 50 (575)
T ss_dssp CCEEEEEEEECC-BTTB-CCEEEEEEE--ESSCT--TCEEE--E-----------------------SC----HHHHHHH
T ss_pred ceEEEEEEEeec-CCCC-CceEEEEEE--eCCce--EEEEe--c-----------------------hh----HHHHHHH
Confidence 367899999974 5554 788888874 33211 12321 1 11 2445555
Q ss_pred c--CCCeEEEEcccccHHHHHHHHHHcC-------CCC-----cc--------cc----------cchHhHHHHHHHHHc
Q psy8196 82 V--SNSEIIIHNAAFDVGFLDMELSLLG-------YSN-----FT--------KY----------IYRITDTLLMARKIH 129 (230)
Q Consensus 82 l--~~~~lV~hna~FD~~~L~~~l~~~g-------~~~-----~~--------~~----------~~~~iDtl~lar~~~ 129 (230)
+ .+..+++||..||..||-..+...| +|. +. .. .-.++|++.++
T Consensus 51 ~~~~~~~i~~hNl~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~~---- 126 (575)
T 2py5_A 51 VLKVQADLYFHNLKFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKL---- 126 (575)
T ss_dssp HHHHCCEEEETTHHHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHS----
T ss_pred HHHcCCEEEEEChhhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhhh----
Confidence 5 3456889999999999998888775 210 00 01 12467877653
Q ss_pred CCCCCcHHHHHHHhCCCCCCC-----------------CCCCHHHHHHHHHHHHHHH
Q psy8196 130 TGKRNSLDALCDRYNISKIHR-----------------TLHGGLLDAELLAEVYLAM 169 (230)
Q Consensus 130 p~~~~~L~~L~~~~gi~~~~r-----------------~~H~Al~Da~~~a~v~~~l 169 (230)
+.||+.+++.|+++.... ..+=.+.||+.+++++...
T Consensus 127 ---~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 127 ---PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp ---CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999873210 0122478999999999865
No 41
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=96.52 E-value=0.0099 Score=47.81 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=61.4
Q ss_pred HHHHhcCCC--eEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcC---CCCCcHHHHHHHh-CCCC-CC
Q psy8196 77 NFLNYVSNS--EIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHT---GKRNSLDALCDRY-NISK-IH 149 (230)
Q Consensus 77 ~~~~fl~~~--~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p---~~~~~L~~L~~~~-gi~~-~~ 149 (230)
.|.+++.+. ..|+|++.+|+..|.+ .+|+.+. .++|+..+|..... ..+.+|..|++.+ |++. +.
T Consensus 99 ~L~~lL~d~~i~Kvg~~~~~D~~~L~~---~~g~~~~-----~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k 170 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQIEEDLDLLRE---NHGLVIR-----NAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQL 170 (206)
T ss_dssp HHHHHHTCSSSEEEESSCHHHHHHHHH---HHCCCCS-----SEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHH
T ss_pred HHHHHhcCCCceEEEeccHHHHHHHHH---hcCCCcC-----CeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCC
Confidence 466677653 4799999999998864 3465432 38898777655543 3456999999875 7766 21
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHHHc
Q psy8196 150 -------------RTLHGGLLDAELLAEVYLAMTR 171 (230)
Q Consensus 150 -------------r~~H~Al~Da~~~a~v~~~l~~ 171 (230)
...+=|..||..+.+||.+|..
T Consensus 171 ~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 171 DSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1245588999999999998863
No 42
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=96.42 E-value=0.0069 Score=58.44 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=59.8
Q ss_pred HHHHHhcCCCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHHHHHcCCCCCcHHHHHHHhCCCCCCCCCCCH
Q psy8196 76 DNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGG 155 (230)
Q Consensus 76 ~~~~~fl~~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~lar~~~p~~~~~L~~L~~~~gi~~~~r~~H~A 155 (230)
..|..|+.+..+ |++||+.+|. ++|+... .++||+.++|.+.|. +++|++|+++||-.... . -|
T Consensus 340 ~~Lk~lLed~~i---n~K~d~~~L~----~~Gi~~~-----~~~Dt~laayLl~p~-~~~l~~l~~~~gk~~~~--~-ya 403 (832)
T 1bgx_T 340 KALRDLKEARGL---LAKDLSVLAL----REGLGLP-----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEWTE--E-AG 403 (832)
T ss_dssp HHHHHCSSBCBT---THHHHHHHHH----HHTCCCC-----BCCCHHHHHHHHCTT-CCSTTHHHHHHSCCCCS--S-HH
T ss_pred HHHHHHHhCCCC---ChHHHHHHHH----HcCCccC-----cccCHHHHHHHcCCC-CCCHHHHHHHhCCCchH--H-HH
Confidence 357778876544 8899998875 5677532 268999999999999 88999999999742111 1 23
Q ss_pred HHHHHHHHHHHHHHHcC
Q psy8196 156 LLDAELLAEVYLAMTRG 172 (230)
Q Consensus 156 l~Da~~~a~v~~~l~~~ 172 (230)
.||..+.++|..+...
T Consensus 404 -~da~~~~~l~~~l~~~ 419 (832)
T 1bgx_T 404 -ERAALSERLFANLWGR 419 (832)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6999999999888654
No 43
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=96.19 E-value=0.0097 Score=53.17 Aligned_cols=99 Identities=24% Similarity=0.249 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccHHHHHHHHHHcCCCC-cc-------cccchHhHHHHHHHHHc-C--CCCCcHHHH
Q psy8196 71 FSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN-FT-------KYIYRITDTLLMARKIH-T--GKRNSLDAL 139 (230)
Q Consensus 71 ~~ev~~~~~~fl~~~~lV~hna~FD~~~L~~~l~~~g~~~-~~-------~~~~~~iDtl~lar~~~-p--~~~~~L~~L 139 (230)
|..+++.+.+ .+.++||||.-.|+-++-+.|-. -+|. +. .+-..++||-.++...- . ....+|..|
T Consensus 270 fr~V~~~L~~--s~KpiVGHN~llDl~~l~~~F~~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l 346 (430)
T 2a1r_A 270 FSRVIHAIAN--SGKLVIGHNMLLDVMHTVHQFYC-PLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAEL 346 (430)
T ss_dssp THHHHHHHHH--HCCEEEESSCHHHHHHHHHHHTC-CCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHH
T ss_pred HHHHHHHHHh--CCCceEechhHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHH
Confidence 4444444433 46689999999999888665421 2331 00 00013789977764321 1 123489999
Q ss_pred HHHhCCC-----------------CCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy8196 140 CDRYNIS-----------------KIHRTLHGGLLDAELLAEVYLAMTRG 172 (230)
Q Consensus 140 ~~~~gi~-----------------~~~r~~H~Al~Da~~~a~v~~~l~~~ 172 (230)
.+.+.-. ......|.|-.||.+|+.||.+|...
T Consensus 347 ~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 347 EKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp HHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 8876421 01234799999999999999999864
No 44
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=80.84 E-value=0.54 Score=37.46 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=62.4
Q ss_pred EEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCC--CCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhc
Q psy8196 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR--DSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYV 82 (230)
Q Consensus 5 ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~--~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl 82 (230)
..+|+|..- ...||++...-.++ .-.|+|=.|.. ..-..+.--|||-..+|.++.+ -..+.++..+
T Consensus 60 tWiDIEG~p------~DPVElAiyQP~sg----~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~vi~~L 127 (243)
T 3q7c_A 60 TWMDIEGRP------EDPVEIALYQPSSG----CYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVIDAL 127 (243)
T ss_dssp CEEEEESCT------TSCSEEEEEETTTT----EEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHHHHHS
T ss_pred eEEecCCCC------CCCeEEEEeccCCC----cEEEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHHHhC
Confidence 568999552 34678987765443 35677878853 2334555679999999998765 4667777788
Q ss_pred CCCeEEEEcccccHHHHHHHHHHcCCCCc
Q psy8196 83 SNSEIIIHNAAFDVGFLDMELSLLGYSNF 111 (230)
Q Consensus 83 ~~~~lV~hna~FD~~~L~~~l~~~g~~~~ 111 (230)
...-++.--++-|+.-| |...|...+
T Consensus 128 P~nMVlT~QGsDDIrkL---ld~hGRrDi 153 (243)
T 3q7c_A 128 PRNMVITCQGSDDIRKL---LESQGRKDI 153 (243)
T ss_dssp CTTCEEEESSHHHHHHH---HHHTTCTTS
T ss_pred CcCcEEEeeChHHHHHH---HHhcCCccc
Confidence 77766666666687544 667776544
No 45
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=71.07 E-value=2 Score=37.96 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=62.3
Q ss_pred EEEEecCCCCCCCCCCceEEEEEEEEECCEEecceeEEEEcCCC--CCChhhHhhcCCCHHHHhCCCCHHHHHHHHHHhc
Q psy8196 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR--DSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYV 82 (230)
Q Consensus 5 ivlD~ETTGl~~~~~~~IieIg~v~~~~~~~~~~~f~~~i~P~~--~i~~~a~~i~Git~e~l~~~~~~~ev~~~~~~fl 82 (230)
..+|+|... ...+|++...-.++ ...|+|=.|.. ..-..+.--|||...+|.++.+ -..+.++..+
T Consensus 394 tWiDIEG~p------~DPVE~AiyQP~~g----~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqP--GL~S~vi~~L 461 (577)
T 3mwp_A 394 TWMDIEGRP------EDPVEIALYQPSSG----CYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVIDAL 461 (577)
T ss_dssp EEEEEESCT------TSCSEEEEEETTTT----EEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCT--THHHHHHHHS
T ss_pred eEEecCCCC------CCCeEEEEeccCCC----cEEEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHHHhC
Confidence 678999552 34678987765443 35778888853 2334555679999999997765 4666777778
Q ss_pred CCCeEEEEcccccHHHHHHHHHHcCCCCc
Q psy8196 83 SNSEIIIHNAAFDVGFLDMELSLLGYSNF 111 (230)
Q Consensus 83 ~~~~lV~hna~FD~~~L~~~l~~~g~~~~ 111 (230)
...-++.--++-|+.-| |.-+|...+
T Consensus 462 P~~mV~T~QGsdDI~kL---ld~hGR~Di 487 (577)
T 3mwp_A 462 PRNMVITCQGSDDIRKL---LESQGRKDI 487 (577)
T ss_dssp CTTCEEEESSHHHHHHH---HHHTTCTTC
T ss_pred CcCcEEEeeChHHHHHH---HHhcCCccc
Confidence 77666666666687544 667776544
No 46
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=52.70 E-value=1.6 Score=42.95 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=23.2
Q ss_pred CCeEEEEcccccHHHHHHHHHHcCCCCcccccchHhHHHHHH
Q psy8196 84 NSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMA 125 (230)
Q Consensus 84 ~~~lV~hna~FD~~~L~~~l~~~g~~~~~~~~~~~iDtl~la 125 (230)
...+||||.+||+..+..++ .+.... .+++|||.+.
T Consensus 194 ~rlIVGHNVsyDRARI~EeY---~l~~sk---~rFlDTMSLH 229 (1172)
T 3ikm_A 194 EQLVVGHNVSFDRAHIREQY---LIQGSR---MRFLDTMSMH 229 (1172)
T ss_dssp CCCCBCBCSSSSTTGGGTSS---CSSCCC---CCCCBTTHHH
T ss_pred ccEEEeCCcchhHHHHHHHH---hcccCC---ceeeechhhh
Confidence 46789999999998775443 332222 2467776554
No 47
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=44.00 E-value=48 Score=29.10 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=30.8
Q ss_pred ceEEEEecCCCCCCCC------C------------------CceEEEEEEEEEC----CEEecceeEEEEcC
Q psy8196 3 RHIVLDIETTGLNIID------G------------------HRIIEIGCVEIKN----RQITGNNLHYYINP 46 (230)
Q Consensus 3 ~~ivlD~ETTGl~~~~------~------------------~~IieIg~v~~~~----~~~~~~~f~~~i~P 46 (230)
.||++|+|.||+.... + -.||++|...++. .......|+.++-|
T Consensus 23 ~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP 94 (430)
T 2a1r_A 23 DFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFP 94 (430)
T ss_dssp SEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCC
T ss_pred CEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEecc
Confidence 5899999999995221 0 3689999888762 23444578888755
No 48
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.93 E-value=80 Score=17.93 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHHhhhc
Q psy8196 202 LANSNELVQHNMILSKIDKH 221 (230)
Q Consensus 202 ~~~~~e~~~h~~~~~~~~~~ 221 (230)
-.|+||+++-++-|+.+.|+
T Consensus 16 gfspeelaaleselqalekk 35 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKK 35 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45889998888877777653
Done!