Your job contains 1 sequence.
>psy8196
MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL
TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD
TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP
KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8196
(230 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P03007 - symbol:dnaQ "DNA polymerase III, epsil... 479 1.3e-45 1
UNIPROTKB|Q9KPX9 - symbol:VC_2233 "DNA polymerase III, ep... 461 1.0e-43 1
TIGR_CMR|VC_2233 - symbol:VC_2233 "DNA polymerase III, ep... 461 1.0e-43 1
TIGR_CMR|CBU_0317 - symbol:CBU_0317 "DNA polymerase III, ... 454 5.7e-43 1
TIGR_CMR|SO_2559 - symbol:SO_2559 "DNA polymerase III, ep... 447 3.2e-42 1
TIGR_CMR|NSE_0470 - symbol:NSE_0470 "DNA polymerase III, ... 392 2.1e-36 1
TIGR_CMR|APH_0730 - symbol:APH_0730 "DNA polymerase III, ... 351 4.7e-32 1
TIGR_CMR|SPO_3889 - symbol:SPO_3889 "DNA polymerase III, ... 308 1.7e-27 1
TIGR_CMR|CPS_0780 - symbol:CPS_0780 "exonuclease" species... 193 2.6e-15 1
TIGR_CMR|SO_2245 - symbol:SO_2245 "DNA polymerase III, ep... 181 4.9e-14 1
TIGR_CMR|CHY_2036 - symbol:CHY_2036 "putative DNA polymer... 179 7.9e-14 1
DICTYBASE|DDB_G0287447 - symbol:DDB_G0287447 "DNA polymer... 185 1.3e-13 1
TIGR_CMR|SPO_1807 - symbol:SPO_1807 "exonuclease, DNA pol... 173 2.4e-12 1
TIGR_CMR|BA_3672 - symbol:BA_3672 "DNA polymerase III, ep... 151 2.4e-10 1
TIGR_CMR|BA_3955 - symbol:BA_3955 "DNA polymerase III, al... 159 3.8e-10 1
TIGR_CMR|CHY_1772 - symbol:CHY_1772 "DNA polymerase III, ... 147 1.4e-08 1
UNIPROTKB|Q74DD3 - symbol:GSU1383 "3'-to-5' exonuclease, ... 112 4.3e-05 1
TIGR_CMR|GSU_1383 - symbol:GSU_1383 "exonuclease" species... 112 4.3e-05 1
TAIR|locus:2148453 - symbol:DPD1 "defective in pollen org... 112 0.00025 1
TIGR_CMR|BA_1565 - symbol:BA_1565 "DnaQ family exonucleas... 116 0.00039 1
>UNIPROTKB|P03007 [details] [associations]
symbol:dnaQ "DNA polymerase III, epsilon subunit"
species:83333 "Escherichia coli K-12" [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004527 "exonuclease activity" evidence=IEA;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006309
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005622 EMBL:U70214 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0045004 EMBL:X04027 EMBL:K00985 PIR:A64746 RefSeq:NP_414751.1
RefSeq:YP_488512.1 PDB:1J53 PDB:1J54 PDB:1MGZ PDB:2GUI PDB:2IDO
PDB:2XY8 PDBsum:1J53 PDBsum:1J54 PDBsum:1MGZ PDBsum:2GUI
PDBsum:2IDO PDBsum:2XY8 ProteinModelPortal:P03007 SMR:P03007
DIP:DIP-9462N IntAct:P03007 MINT:MINT-1222832 SWISS-2DPAGE:P03007
EnsemblBacteria:EBESCT00000002781 EnsemblBacteria:EBESCT00000002782
EnsemblBacteria:EBESCT00000016960 GeneID:12933127 GeneID:946441
KEGG:ecj:Y75_p0206 KEGG:eco:b0215 PATRIC:32115543 EchoBASE:EB0239
EcoGene:EG10243 HOGENOM:HOG000258616 KO:K02342 OMA:HGITNEF
ProtClustDB:PRK05711 BioCyc:EcoCyc:EG10243-MONOMER
BioCyc:ECOL316407:JW0205-MONOMER BioCyc:MetaCyc:EG10243-MONOMER
ChEMBL:CHEMBL1075047 EvolutionaryTrace:P03007 Genevestigator:P03007
TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406 Uniprot:P03007
Length = 243
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 101/237 (42%), Positives = 135/237 (56%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GXXXXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G +E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSXXXXXXXXXXXXXXXXLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + A E+ H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQK-KGGSCLWR 242
>UNIPROTKB|Q9KPX9 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006309 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0009360
KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 98/238 (41%), Positives = 138/238 (57%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+ +
Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEV 70
Query: 58 HGXXXXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG ++ + F++++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 71 HGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKINNSXXXXXXXXXXXXXXXXL-----ANSNELVQHNMILSKIDKHSNGRCIWK 229
F NS A+++EL H L + K +G C+W+
Sbjct: 191 QFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>TIGR_CMR|VC_2233 [details] [associations]
symbol:VC_2233 "DNA polymerase III, epsilon subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0009360 KO:K02342 ProtClustDB:PRK05711 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007 PIR:F82101
RefSeq:NP_231864.1 ProteinModelPortal:Q9KPX9 SMR:Q9KPX9
DNASU:2613155 GeneID:2613155 KEGG:vch:VC2233 PATRIC:20083511
Uniprot:Q9KPX9
Length = 247
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 98/238 (41%), Positives = 138/238 (57%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+ +
Sbjct: 11 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEV 70
Query: 58 HGXXXXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG ++ + F++++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 71 HGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKINNSXXXXXXXXXXXXXXXXL-----ANSNELVQHNMILSKIDKHSNGRCIWK 229
F NS A+++EL H L + K +G C+W+
Sbjct: 191 QFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>TIGR_CMR|CBU_0317 [details] [associations]
symbol:CBU_0317 "DNA polymerase III, epsilon subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 HOGENOM:HOG000258616 KO:K02342
OMA:HGITNEF TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406
RefSeq:NP_819360.2 ProteinModelPortal:Q83EK2 GeneID:1208199
KEGG:cbu:CBU_0317 PATRIC:17929325 ProtClustDB:CLSK913983
BioCyc:CBUR227377:GJ7S-325-MONOMER Uniprot:Q83EK2
Length = 236
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 101/231 (43%), Positives = 136/231 (58%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXX 62
R IVLD ETTGL +GHRIIEIG +E+ NR++TGN+LH+YINP R E+ A+ IHG
Sbjct: 6 RQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGITD 65
Query: 63 XXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+I ++++ +E+IIHNA FDVGFL+ EL L G S T Y ++ DT
Sbjct: 66 SFLIDKPLFKDIATELISFLKGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYCQVLDT 125
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR+ H G+ N+LDALC RY++ +R HG LLDAELLA+VYL MT GQ+ L F+ +
Sbjct: 126 LTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVL-FEQQ 184
Query: 182 ----INNSXXXXXXXXXXXXXXXXLANSNELVQHNMILSKIDKHSNGRCIW 228
+ S AN+ E H L + + NG C+W
Sbjct: 185 GFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTE--NGLCLW 233
>TIGR_CMR|SO_2559 [details] [associations]
symbol:SO_2559 "DNA polymerase III, epsilon subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 HOGENOM:HOG000258616 KO:K02342
TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406 OMA:ILAREKH HSSP:P03007
RefSeq:NP_718145.1 ProteinModelPortal:Q8EE31 GeneID:1170264
KEGG:son:SO_2559 PATRIC:23524747 ProtClustDB:CLSK906767
Uniprot:Q8EE31
Length = 242
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 95/235 (40%), Positives = 137/235 (58%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIAV 68
Query: 58 HGXXXXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIY 116
HG +I F++++S +EI+ HNA FDV F+D E SLL T+ I
Sbjct: 69 HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTRDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I D+L +A+ +H G++N+LDALC RY I R HG LLDAE+LA+VYL+MT GQ+
Sbjct: 129 EILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSMTGGQTKF 188
Query: 177 NFK-PKINNSXXXXXXXXXXXXXXXXL-ANSNELVQHNMILSKIDKHSNGRCIWK 229
N ++ + A+++ELV H L + K +G+C+W+
Sbjct: 189 NLSNEEVGQEGGGIQRFDPTSLNLKVICASADELVMHEKRLDLVAK--SGKCLWR 241
>TIGR_CMR|NSE_0470 [details] [associations]
symbol:NSE_0470 "DNA polymerase III, epsilon subunit"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0009360 "DNA polymerase
III complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 HOGENOM:HOG000258616
KO:K02342 TIGRFAMs:TIGR00573 TIGRFAMs:TIGR01406 RefSeq:YP_506355.1
ProteinModelPortal:Q2GDU1 STRING:Q2GDU1 GeneID:3932262
KEGG:nse:NSE_0470 PATRIC:22680989 OMA:IRVVQEK
ProtClustDB:CLSK2527834 BioCyc:NSEN222891:GHFU-491-MONOMER
Uniprot:Q2GDU1
Length = 228
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 80/177 (45%), Positives = 112/177 (63%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXX 62
R ++LD ETTGL++ +G R+IEIGCVE+ + +ITG H Y+NP R+ K A +HG
Sbjct: 5 RKVILDTETTGLDMKNGDRVIEIGCVEVVDFRITGEIFHIYLNPEREISKEATRVHGITF 64
Query: 63 XXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+I D+FL ++ +SEI+ HNA+FD+ FL+ EL K + + DTL
Sbjct: 65 EQLADSPKFIDIADDFLKFIDSSEIVAHNASFDIRFLNSELIRARQRRLIK-LENVIDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNF 178
MARKI G SLDALC R+ IS R LHG LLDA+LLA VY+ +++G Q +++F
Sbjct: 124 AMARKIFPGSPASLDALCRRFRISLEQRELHGALLDAQLLARVYIELSKGSQVSMSF 180
>TIGR_CMR|APH_0730 [details] [associations]
symbol:APH_0730 "DNA polymerase III, epsilon subunit"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0009360 "DNA polymerase
III complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006309 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0004527 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
HOGENOM:HOG000258616 KO:K02342 TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 OMA:IRVVQEK RefSeq:YP_505310.1
ProteinModelPortal:Q2GJZ1 STRING:Q2GJZ1 GeneID:3931235
KEGG:aph:APH_0730 PATRIC:20950150 ProtClustDB:CLSK2463724
BioCyc:APHA212042:GHPM-747-MONOMER Uniprot:Q2GJZ1
Length = 244
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 81/184 (44%), Positives = 106/184 (57%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXX 62
R IVLD ETTGL+ G RIIEIGCVE+ + +TG H YI+P RD +A +HG
Sbjct: 4 REIVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITR 63
Query: 63 XXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+E+ D L+++ +S ++IHNA FD+ FL++E+ L SN I DTL
Sbjct: 64 ESLIGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERL--SNKRAITNTIVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
MARK G SLDALC R+NIS R HG L DA LLA VY+ + Q L F +
Sbjct: 122 EMARKKFPGMPASLDALCKRFNISTQERKFHGALKDATLLARVYVELLEALQRRLVFSQE 181
Query: 182 INNS 185
++S
Sbjct: 182 GDDS 185
>TIGR_CMR|SPO_3889 [details] [associations]
symbol:SPO_3889 "DNA polymerase III, epsilon subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006309
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
HOGENOM:HOG000258616 KO:K02342 OMA:HGITNEF TIGRFAMs:TIGR00573
TIGRFAMs:TIGR01406 RefSeq:YP_169077.1 ProteinModelPortal:Q5LLN3
GeneID:3196237 KEGG:sil:SPO3889 PATRIC:23381285
ProtClustDB:CLSK767422 Uniprot:Q5LLN3
Length = 241
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 75/184 (40%), Positives = 99/184 (53%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXX- 61
R IVLD ETTG + G RI+EIG VE+ N TGN H YINP R A +HG
Sbjct: 2 REIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPERMMPAEAFGVHGIGP 61
Query: 62 ------------XXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS 109
+++ F ++V++S ++IHNA+FD+ FL+ EL +G
Sbjct: 62 DILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVADSHLVIHNASFDMKFLNAELRWMGLP 121
Query: 110 NFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM 169
R DTL MAR+ G +LDALC R+ I +R LHG LLDAE+LAEVYL +
Sbjct: 122 EIP--FDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYLEL 179
Query: 170 TRGQ 173
G+
Sbjct: 180 IGGK 183
>TIGR_CMR|CPS_0780 [details] [associations]
symbol:CPS_0780 "exonuclease" species:167879 "Colwellia
psychrerythraea 34H" [GO:0016797 "exonuclease activity, active with
either ribo- or deoxyribonucleic acids and producing
3'-phosphomonoesters" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
eggNOG:COG2176 RefSeq:YP_267529.1 ProteinModelPortal:Q488I5
STRING:Q488I5 GeneID:3519836 KEGG:cps:CPS_0780 PATRIC:21464867
HOGENOM:HOG000258615 OMA:TAPNHKL BioCyc:CPSY167879:GI48-866-MONOMER
Uniprot:Q488I5
Length = 203
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 49/166 (29%), Positives = 85/166 (51%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXXX 64
I+LD ETTGL+ +G R IEIG V+++N +T + + PGR G
Sbjct: 7 IILDFETTGLSPDNGDRAIEIGAVKLENGVVT-DRFQELMYPGRPVSHFIADYTGITNVM 65
Query: 65 XXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
E++D F ++ ++ HNA+FD FLD EL + + Y + +LL+
Sbjct: 66 LSKAAPCHEVMDRFSGFIQGQNLVAHNASFDKRFLDSELKRIS----SGYDGQFACSLLL 121
Query: 125 ARKIH-TGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM 169
+R+++ T + L L + I+ + + H L D+E+ A++++AM
Sbjct: 122 SRRLYQTAPNHKLGTLINYKGIAS-NGSFHRALYDSEMTAKLWVAM 166
>TIGR_CMR|SO_2245 [details] [associations]
symbol:SO_2245 "DNA polymerase III, epsilon subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615 HSSP:P03007
RefSeq:NP_717841.1 ProteinModelPortal:Q8EEW7 GeneID:1169977
KEGG:son:SO_2245 PATRIC:23524113 OMA:PPFSLMQ ProtClustDB:CLSK906649
Uniprot:Q8EEW7
Length = 212
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 51/165 (30%), Positives = 78/165 (47%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXXX 64
+VLD ET+GL+ G R IEIG V I+ QIT +NPG G
Sbjct: 14 VVLDFETSGLSPNQGARAIEIGAVLIEQGQIT-TRFSELMNPGFRINAFIEDYTGISNQM 72
Query: 65 XXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
+E++ F ++ ++ HNAAFD FLD E + +G+ +Y + +LL+
Sbjct: 73 LAHAAPCAEVMARFAEFIGKHHLVAHNAAFDQRFLDAEFAHIGH----QYSGQFGCSLLL 128
Query: 125 ARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM 169
AR+++ N A R+ + T H L DAE+ ++L M
Sbjct: 129 ARRLYPEAINHQLATLVRHKQLPNNGTFHRALADAEMTGHLWLRM 173
>TIGR_CMR|CHY_2036 [details] [associations]
symbol:CHY_2036 "putative DNA polymerase III, epsilon
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
RefSeq:YP_360855.1 ProteinModelPortal:Q3AAH9 STRING:Q3AAH9
GeneID:3727760 KEGG:chy:CHY_2036 PATRIC:21277153 OMA:ILAREKH
ProtClustDB:CLSK382625 BioCyc:CHYD246194:GJCN-2035-MONOMER
Uniprot:Q3AAH9
Length = 222
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 52/165 (31%), Positives = 79/165 (47%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXX 63
+ V+D+ETTGL G II IG V+I N IT H Y+NP R+ + + G
Sbjct: 38 YTVIDLETTGLKPFQGDEIIAIGAVKIINGNITRPAFHAYVNPQREIPEVVQRLTGISPK 97
Query: 64 XXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+ + L++ NS I+ H+ FD+ FL+ LS L T R+ DT+
Sbjct: 98 TVQNAPPLTNTLTTLLDFARNSVIVGHSVNFDLAFLNKHLSSLTGKKLTP---RLLDTVD 154
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
+ + + N SL+ ++ IS R H L DA + A+V+L
Sbjct: 155 LGIYLFPREPNYSLENFAQKFAISLQGR--HTALGDAVICAKVFL 197
>DICTYBASE|DDB_G0287447 [details] [associations]
symbol:DDB_G0287447 "DNA polymerase III, epsilon
subunit" species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 dictyBase:DDB_G0287447
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AAFI02000100
GO:GO:0004527 SUPFAM:SSF53098 GO:GO:0003887 TIGRFAMs:TIGR00573
RefSeq:XP_001733024.1 ProteinModelPortal:B0G161
EnsemblProtists:DDB0238737 GeneID:8626093 KEGG:ddi:DDB_G0287447
OMA:ICFDLET Uniprot:B0G161
Length = 483
Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 60/185 (32%), Positives = 87/185 (47%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXX 62
R I D+ET+G+ D IIEIG VE+ + TG Y P + IH
Sbjct: 300 RVICFDLETSGVTSSD--TIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTS 357
Query: 63 XXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD-T 121
I+ +F+++V NS ++ HN AFD L EL + Y N I I T
Sbjct: 358 LQLMSAPPIEIILASFMDWVGNSPLVAHNLAFDKRILIQEL--IRY-NIPFNIDHICFCT 414
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIH-RTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+ +KI+ G SLD++ + I+K+ R HG L+D+E+LA +Y + N K
Sbjct: 415 MKYFKKIYNGLNYSLDSISQKLKINKLLLRKTHGALIDSEILAIIYTHLLIVDPNTAVKK 474
Query: 181 KINNS 185
I NS
Sbjct: 475 IIANS 479
>TIGR_CMR|SPO_1807 [details] [associations]
symbol:SPO_1807 "exonuclease, DNA polymerase III, epsilon
subunit family" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000014 InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00091 SMART:SM00479 Pfam:PF00929
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0005622 GO:GO:0004871 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
RefSeq:YP_167044.1 ProteinModelPortal:Q5LSG1 GeneID:3193715
KEGG:sil:SPO1807 PATRIC:23376943 HOGENOM:HOG000146765 OMA:RIFLFFC
ProtClustDB:CLSK933644 Uniprot:Q5LSG1
Length = 470
Score = 173 (66.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 48/166 (28%), Positives = 76/166 (45%)
Query: 6 VLDIETTGLNIIDGHRIIEIGCVEI-KNRQITGNNLHYYINPGRDSEKSALAIHGXXXXX 64
V D ETTGL + I++IG V + K R + G + ++PGR ++ +HG
Sbjct: 280 VFDTETTGL-LPHKDEIVQIGAVRVVKGRIVPGERIDQLVDPGRPIPPASTRVHGVSDAM 338
Query: 65 XXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
F + ++ I+ HNA FD+ FL G + + I DT+L+
Sbjct: 339 VAGAPDIVAAARQFHQFARDAVIVAHNAPFDIAFLRRHGPRCGLD----WDHPILDTVLL 394
Query: 125 ARKIH-TGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM 169
+ + + ++LDALCDR ++ H L DA+ AEV M
Sbjct: 395 SAVLFGASETHTLDALCDRLGVTIPAPLRHTALGDAQATAEVLCRM 440
>TIGR_CMR|BA_3672 [details] [associations]
symbol:BA_3672 "DNA polymerase III, epsilon subunit,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HSSP:P03007 RefSeq:NP_845935.1 RefSeq:YP_020306.1
RefSeq:YP_029660.1 ProteinModelPortal:Q81Y85 DNASU:1089228
EnsemblBacteria:EBBACT00000011122 EnsemblBacteria:EBBACT00000018521
EnsemblBacteria:EBBACT00000024461 GeneID:1089228 GeneID:2815455
GeneID:2848298 KEGG:ban:BA_3672 KEGG:bar:GBAA_3672 KEGG:bat:BAS3404
HOGENOM:HOG000095225 OMA:KKYVLTE ProtClustDB:PRK06807
BioCyc:BANT260799:GJAJ-3466-MONOMER
BioCyc:BANT261594:GJ7F-3577-MONOMER Uniprot:Q81Y85
Length = 315
Score = 151 (58.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 41/164 (25%), Positives = 78/164 (47%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXX 63
++V+D ETTG N + +II++ V+ +N ++ + Y +NP R +++ G
Sbjct: 10 YVVIDFETTGFNPYND-KIIQVAAVKYRNHELVDQFVSY-VNPKRPIPDRIMSLTGITNY 67
Query: 64 XXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
E++ FL ++ + I+ HNA+FD+ FL +++LG ++ DT+
Sbjct: 68 RVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKN---KVIDTVF 124
Query: 124 MARK-IHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVY 166
+A+K + + L+ L + I + H D A VY
Sbjct: 125 LAKKYMKHAPNHKLETL---KRMLGIRLSSHNAFDDCITCAAVY 165
>TIGR_CMR|BA_3955 [details] [associations]
symbol:BA_3955 "DNA polymerase III, alpha subunit,
Gram-positive type" species:198094 "Bacillus anthracis str. Ames"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003141
InterPro:IPR004013 InterPro:IPR004365 InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR006308 InterPro:IPR011708
InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811 Pfam:PF07733
SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006261 GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408
GO:GO:0003887 TIGRFAMs:TIGR00573 KO:K03763 OMA:IYGMEAN
ProtClustDB:PRK00448 HAMAP:MF_00356 TIGRFAMs:TIGR01405
HOGENOM:HOG000058064 InterPro:IPR024754 Pfam:PF11490
RefSeq:NP_846198.1 RefSeq:YP_020594.1 RefSeq:YP_029920.1
HSSP:P03007 ProteinModelPortal:Q81WL8 IntAct:Q81WL8
EnsemblBacteria:EBBACT00000010872 EnsemblBacteria:EBBACT00000014310
EnsemblBacteria:EBBACT00000022295 GeneID:1087547 GeneID:2820091
GeneID:2852033 KEGG:ban:BA_3955 KEGG:bar:GBAA_3955 KEGG:bat:BAS3669
BioCyc:BANT260799:GJAJ-3727-MONOMER
BioCyc:BANT261594:GJ7F-3843-MONOMER Uniprot:Q81WL8
Length = 1433
Score = 159 (61.0 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 43/185 (23%), Positives = 86/185 (46%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXX 63
++V D+ETTGL+ + +IE+ V++K +I + + NP + + + + G
Sbjct: 418 YVVFDVETTGLSAVYD-TVIELAAVKVKGGEII-DRFESFANPHQPLSATIIELTGITDD 475
Query: 64 XXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
E+ F ++ + ++ HNA+FD+GF+++ G TK + DTL
Sbjct: 476 MLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEK-TKN--PVIDTLE 532
Query: 124 MARKIHTGKRNS-LDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG--QSNLNFKP 180
+AR + +N L+ LC + +I H + D E + + M + + +
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYHD 590
Query: 181 KINNS 185
++N+S
Sbjct: 591 QLNDS 595
>TIGR_CMR|CHY_1772 [details] [associations]
symbol:CHY_1772 "DNA polymerase III, alpha subunit,
Gram-positive type" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003141 InterPro:IPR004013 InterPro:IPR004365
InterPro:IPR006054 InterPro:IPR006055 InterPro:IPR006308
InterPro:IPR011708 InterPro:IPR012337 Pfam:PF01336 Pfam:PF02811
Pfam:PF07733 SMART:SM00479 SMART:SM00481 Pfam:PF00929 GO:GO:0005737
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 GO:GO:0003887
TIGRFAMs:TIGR00573 eggNOG:COG2176 KO:K03763 OMA:IYGMEAN
HAMAP:MF_00356 TIGRFAMs:TIGR01405 RefSeq:YP_360592.1
ProteinModelPortal:Q3AB92 STRING:Q3AB92 GeneID:3727188
KEGG:chy:CHY_1772 PATRIC:21276655 HOGENOM:HOG000058064
BioCyc:CHYD246194:GJCN-1771-MONOMER InterPro:IPR024754 Pfam:PF11490
Uniprot:Q3AB92
Length = 1407
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 53/186 (28%), Positives = 81/186 (43%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXXX 64
+ D ET+GL+ IIEIG V+I + +I I P + + G
Sbjct: 395 VAFDFETSGLSS-QRDEIIEIGAVKIFDGEIK-ETFSVLIRPQKPISAKISELTGITNDL 452
Query: 65 XXXXXXX-SEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
E ++ FL + S ++ HNAAFD GFL L LG+ K+ + D L
Sbjct: 453 LEKEGLDFGEAIEKFLRFCDGSILLAHNAAFDYGFLRQALKRLGHER--KF--SVVDNLA 508
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMT-----RGQSNLN 177
+ R + +N L + + +S + H L D+ LAEV+L + RG +L+
Sbjct: 509 LVRILFPELKNHKLKTITEHLEVSLNNH--HRALADSYALAEVFLKLLPRLFERGLYSLD 566
Query: 178 FKPKIN 183
KIN
Sbjct: 567 DLAKIN 572
>UNIPROTKB|Q74DD3 [details] [associations]
symbol:GSU1383 "3'-to-5' exonuclease, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HOGENOM:HOG000258615 RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3
GeneID:2687906 KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP
ProtClustDB:CLSK763133 BioCyc:GSUL243231:GH27-1334-MONOMER
Uniprot:Q74DD3
Length = 181
Score = 112 (44.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXX 61
H +D+ETTGL G R++E+ V + QI + I + + IHG
Sbjct: 5 HLQAAIDVETTGLFPGYGDRVVEVAAVLVDEGQIV-SEFSSLIRVTKAIPRHVSMIHGIT 63
Query: 62 XXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS 109
E+ +++ + ++ HNA FD+ FL E LG S
Sbjct: 64 NDMLADQPLPEEVYPALGDFIGTALLVAHNARFDLAFLRHEFGRLGLS 111
>TIGR_CMR|GSU_1383 [details] [associations]
symbol:GSU_1383 "exonuclease" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
[GO:0016797 "exonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing 3'-phosphomonoesters"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3 GeneID:2687906
KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP ProtClustDB:CLSK763133
BioCyc:GSUL243231:GH27-1334-MONOMER Uniprot:Q74DD3
Length = 181
Score = 112 (44.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXX 61
H +D+ETTGL G R++E+ V + QI + I + + IHG
Sbjct: 5 HLQAAIDVETTGLFPGYGDRVVEVAAVLVDEGQIV-SEFSSLIRVTKAIPRHVSMIHGIT 63
Query: 62 XXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS 109
E+ +++ + ++ HNA FD+ FL E LG S
Sbjct: 64 NDMLADQPLPEEVYPALGDFIGTALLVAHNARFDLAFLRHEFGRLGLS 111
>TAIR|locus:2148453 [details] [associations]
symbol:DPD1 "defective in pollen organelle DNA
degradation1" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA;ISS;IDA] [GO:0005622 "intracellular"
evidence=IEA;ISS] [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005739 EMBL:CP002688 GO:GO:0009536 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0000738
EMBL:BT025876 EMBL:AK175271 IPI:IPI00523862 RefSeq:NP_198046.1
RefSeq:NP_851082.1 RefSeq:NP_851083.1 RefSeq:NP_974842.1
UniGene:At.20000 ProteinModelPortal:Q682U6 SMR:Q682U6 PRIDE:Q682U6
EnsemblPlants:AT5G26940.1 EnsemblPlants:AT5G26940.2
EnsemblPlants:AT5G26940.3 EnsemblPlants:AT5G26940.4 GeneID:832752
KEGG:ath:AT5G26940 InParanoid:Q682U6 OMA:VPRMEEL
ProtClustDB:CLSN2686956 Genevestigator:Q682U6 Uniprot:Q682U6
Length = 316
Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
Identities = 53/182 (29%), Positives = 84/182 (46%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXXXXX 64
IV D+ETTGL+ RIIEI +I + +NPG +A IHG
Sbjct: 112 IVSDLETTGLHR-KNERIIEIAAQDIAGGGYS--TFQTLVNPGVVPITNA-HIHGIRNDM 167
Query: 65 XXXXXX--XSEIVDNFLNYVSNSE-------IIIHNA-AFDVGFLDMELSLLGYSNFTKY 114
E++ FL YV + + ++ HN +FD FL E + Y +
Sbjct: 168 VCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYE--IPH 225
Query: 115 IYRITDTLLMARK----IH-TGK-RNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLA 168
+ + D+L +AR+ + T K +SL+AL D Y++++ H L D LL++V+
Sbjct: 226 NWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTR-EGDAHRALSDVLLLSKVFQK 284
Query: 169 MT 170
+T
Sbjct: 285 LT 286
>TIGR_CMR|BA_1565 [details] [associations]
symbol:BA_1565 "DnaQ family exonuclease/DinG family
helicase, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006310 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR012337 InterPro:IPR014013 Pfam:PF04851 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00479 SMART:SM00491
Pfam:PF00929 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 GO:GO:0006310 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 GO:GO:0008026
GO:GO:0003887 KO:K03722 TIGRFAMs:TIGR00573 RefSeq:NP_844015.1
RefSeq:YP_018187.1 RefSeq:YP_027721.1 ProteinModelPortal:Q81ST0
IntAct:Q81ST0 DNASU:1086736 EnsemblBacteria:EBBACT00000010766
EnsemblBacteria:EBBACT00000017129 EnsemblBacteria:EBBACT00000022124
GeneID:1086736 GeneID:2815613 GeneID:2849564 KEGG:ban:BA_1565
KEGG:bar:GBAA_1565 KEGG:bat:BAS1452 HOGENOM:HOG000041588
OMA:YLFAYAY ProtClustDB:PRK08074
BioCyc:BANT260799:GJAJ-1526-MONOMER
BioCyc:BANT261594:GJ7F-1589-MONOMER TIGRFAMs:TIGR01407
Uniprot:Q81ST0
Length = 934
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 41/167 (24%), Positives = 74/167 (44%)
Query: 3 RHIVLDIETTGLNIIDGH-RIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGXX 61
R++V+D+ETTG + DG +I +I V +++ +I +INP R+ + G
Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEIL-EIFSSFINPKREIPPFITELTGID 62
Query: 62 XXXXXXXXXXSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDT 121
++ + + + + HN FD FL EL GY+ + ++ DT
Sbjct: 63 ESMVKQAPLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEI--HCPKV-DT 119
Query: 122 LLMAR-KIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
+ +A+ + T L L ++ + H H DA AE++L
Sbjct: 120 VELAQILLPTADSYKLRDLAKQHELE--HDQPHRADSDALATAELFL 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 230 202 0.00090 111 3 11 22 0.46 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 581 (62 KB)
Total size of DFA: 161 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 16.58u 0.07s 16.65t Elapsed: 00:00:09
Total cpu time: 16.59u 0.07s 16.66t Elapsed: 00:00:11
Start: Thu Aug 15 10:56:34 2013 End: Thu Aug 15 10:56:45 2013