BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8199
(965 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
Length = 369
Score = 323 bits (829), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 200/283 (70%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T + A +++ +E V+ +A+
Sbjct: 50 AQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 109
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE C+TLG L+E+QA RL G
Sbjct: 110 KAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAG 169
Query: 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAELI 845
LDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ L E+ RA L+
Sbjct: 170 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLL 229
Query: 846 FQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 905
QLANL PESVPIN LV++KGTPL + +D +FIRTIAVARI MPTS +R+SAGR+
Sbjct: 230 LQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGRE 289
Query: 906 EMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
+M E TQA CF+AGANSIFYG +L +KLG
Sbjct: 290 QMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLG 332
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 222/408 (54%), Gaps = 7/408 (1%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
K+ +GK Y D SS W+N+ GH ++ A+K QL K+ H L +T+ P +L+E L
Sbjct: 37 KVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETL 96
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++ KL FY GA A+E+ALKM+F YW N G K+KFI ++N YHG+T+GA++V
Sbjct: 97 IDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSV 156
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 426
+I+ F +Y L+ ++Y P G+ +E + +L LL+++H +
Sbjct: 157 GSIELFHHVYGPLMFESYKAPIPYVYRSESGDP-DECRDQXLRELAQLLEEHHEEIAALS 215
Query: 427 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
E +VQ A GMI+ YL VRE+C Y++ +I DE+A G GRTGK FACEH + PD
Sbjct: 216 IESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL 275
Query: 487 LCLSKGITGGYLPLSLVMTT-DXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
+ KGITGGYLP+++ T D F H HSY+GN L C AL L +F
Sbjct: 276 MAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALF 335
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVI--IEDPEQIETFSKKF 603
+NI++++++ KK+ L L P + + RQ G + +++ E E +
Sbjct: 336 ESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIG 395
Query: 604 FVAALKNE---LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ +LK +L RP+G+ + +PP E+ M + + Q +E+
Sbjct: 396 YKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 274 bits (701), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 222/408 (54%), Gaps = 7/408 (1%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
K+ +GK Y D SS W+N+ GH ++ A+K QL K+ H L +T+ P +L+E L
Sbjct: 37 KVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETL 96
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++ KL FY GA A+E+ALKM+F YW N G K+KFI ++N YHG+T+GA++V
Sbjct: 97 IDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSV 156
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 426
+I+ F +Y L+ ++Y P G+ +C + +L LL+++H +
Sbjct: 157 GSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQC-LRELAQLLEEHHEEIAALS 215
Query: 427 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
E +VQ A GMI+ YL VRE+C Y++ +I DE+A G GRTGK FACEH + PD
Sbjct: 216 IESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDL 275
Query: 487 LCLSKGITGGYLPLSLVMTT-DXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
+ KGITGGYLP+++ T D F H HSY+GN L C AL L +F
Sbjct: 276 MAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALF 335
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVI--IEDPEQIETFSKKF 603
+NI++++++ KK+ L L P + + RQ G + +++ E E +
Sbjct: 336 ESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIG 395
Query: 604 FVAALKNE---LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ +LK +L RP+G+ + +PP E+ M + + Q +E+
Sbjct: 396 YKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 217/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 247 bits (630), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG + +F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKG-EARDRFLTFRNGYHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGKALTGGTMTLSATLTT-REVAETISDGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 246 bits (627), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G G TGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + + P G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIAPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N +HG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGFHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 215/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGNTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G G+TGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHAEIAPD 268
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 604
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/389 (32%), Positives = 197/389 (50%), Gaps = 20/389 (5%)
Query: 257 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH 316
LDA+SSWW + GH + +++AL QL + HVM LTH+P +L++ L +T L
Sbjct: 78 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 137
Query: 317 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEI 375
F+ G+ +VEVA KM+ YW +G K++ + + YHG+T A+++ + +
Sbjct: 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 197
Query: 376 YTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCA 434
+T +L + + P R+ + SA E L ++ + EP+VQ A
Sbjct: 198 WTDVLAAQVFAPQVP--RDYDPAYSAA---------FEAQLAQHAGELAAVVVEPVVQGA 246
Query: 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 494
GGM +D YL +R+IC Y + LI DEIA G GRTG FA +HA + PD +C+ K +T
Sbjct: 247 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 306
Query: 495 GGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554
GGYL L+ + T +H ++ NPLAC ++A++E+ + RI
Sbjct: 307 GGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRI 365
Query: 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 614
++ +T L + P + + R G I + + P + + AAL + L
Sbjct: 366 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIEC--DRPVDLAVATP----AALDRGVWL 419
Query: 615 RPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643
RP N VY MPPYI EI +TSA+ +
Sbjct: 420 RPFRNLVYAMPPYICTPAEITQITSAMVE 448
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 196/389 (50%), Gaps = 20/389 (5%)
Query: 257 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH 316
LDA+SSWW + GH + +++AL QL + HVM LTH+P +L++ L +T L
Sbjct: 58 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 117
Query: 317 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEI 375
F+ G+ +VEVA KM+ YW +G K++ + + YHG+T A+++ + +
Sbjct: 118 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 177
Query: 376 YTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCA 434
+T +L + + P R+ + SA E L ++ + EP+VQ A
Sbjct: 178 WTDVLAAQVFAPQVP--RDYDPAYSAA---------FEAQLAQHAGELAAVVVEPVVQGA 226
Query: 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 494
GGM +D YL +R+IC Y + LI DEIA G GRTG FA +HA + PD +C+ K +T
Sbjct: 227 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 286
Query: 495 GGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554
GGYL L+ + T + ++ NPLAC ++A++E+ + RI
Sbjct: 287 GGYLSLAATLCT-ADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 345
Query: 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 614
++ +T L + P + + R G I + + P + + AAL + L
Sbjct: 346 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIEC--DRPVDLAVATP----AALDRGVWL 399
Query: 615 RPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643
RP N VY MPPYI EI +TSA+ +
Sbjct: 400 RPFRNLVYAMPPYICTPAEITQITSAMVE 428
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 230 bits (586), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 196/389 (50%), Gaps = 20/389 (5%)
Query: 257 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH 316
LDA+SSWW + GH + +++AL QL + HVM LTH+P +L++ L +T L
Sbjct: 83 LDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDT 142
Query: 317 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEI 375
F+ G+ +VEVA KM+ YW +G K++ + + YHG+T A+++ + +
Sbjct: 143 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSL 202
Query: 376 YTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCA 434
+T +L + + P R+ + SA E L ++ + EP+VQ A
Sbjct: 203 WTDVLAAQVFAPQVP--RDYDPAYSAA---------FEAQLAQHAGELAAVVVEPVVQGA 251
Query: 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 494
GGM +D YL +R+IC Y + LI DEIA G GRTG FA +HA + PD +C+ K +T
Sbjct: 252 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 311
Query: 495 GGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554
GGYL L+ + T + ++ NPLAC ++A++E+ + RI
Sbjct: 312 GGYLSLAATLCT-ADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 370
Query: 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 614
++ +T L + P + + R G I + + P + + AAL + L
Sbjct: 371 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIEC--DRPVDLAVATP----AALDRGVWL 424
Query: 615 RPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643
RP N VY MPPYI EI +TSA+ +
Sbjct: 425 RPFRNLVYAMPPYICTPAEITQITSAMVE 453
>pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine
Synthase Rlud From Escherichia Coli
pdb|2IST|A Chain A, Crystal Structure Of Rlud From E. Coli
Length = 325
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 77 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 136
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 137 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRT 196
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
M V + KPA+T+Y + ++ + +R L+TGRTHQIRVHM + H +VGD
Sbjct: 197 HMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVGDP 250
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 251 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 308
>pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna
Pseudouridine Synthase Rlud
Length = 349
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 101 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 160
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL VVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 161 LDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPISRHPTKRT 220
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
V + KPA+T+Y ++ + +R L+TGRTHQIRVH + H +VGD
Sbjct: 221 HXAV--HPMGKPAVTHYRIXEHFRVHTR----LRLRLETGRTHQIRVHXAHITHPLVGDP 274
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++ +W +P D +LI
Sbjct: 275 VYGGRPRPPKGASEAFISTLRKFDRQALHATXLRLYHPISGIEXEWHAPIPQDXVELI 332
>pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic
Module
Length = 252
Score = 175 bits (443), Expect = 1e-43, Method: Composition-based stats.
Identities = 98/238 (41%), Positives = 139/238 (58%), Gaps = 17/238 (7%)
Query: 23 EKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHR 82
E + I LDI+YED +II++NK LVVHP GN GT+ + LL YP + +VPRAGIVHR
Sbjct: 4 EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 63
Query: 83 LDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRI 142
LDK+++GL VVAK++ + LV L+ + R+Y A+ G G ++ I R+P R
Sbjct: 64 LDKDTTGLXVVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPISRHPTKRT 123
Query: 143 KMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN 202
V KPA+T+Y ++ + +R L+TGRTHQIRVH + H +VGD
Sbjct: 124 HXAVHP--XGKPAVTHYRIXEHFRVHTR----LRLRLETGRTHQIRVHXAHITHPLVGDP 177
Query: 203 LYG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+YG K S++ I F+RQALHA L L HP + ++ +W +P D +LI
Sbjct: 178 VYGGRPRPPKGASEAFISTLRKFDRQALHATXLRLYHPISGIEXEWHAPIPQDXVELI 235
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 187/407 (45%), Gaps = 21/407 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQ 311
G+ LDA++ W G+ + + Q+ +L + TH P I L++KL+ L
Sbjct: 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAP 113
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L H F+ G+ A + ++M YW NKG K I +N+YHG T+ + A+ +
Sbjct: 114 GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAG 173
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKXXXXXXEPL 430
+ L+ + I P+ E +LE +L+ N+ EP
Sbjct: 174 MH-AQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEP- 231
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
VQ AGG+I+ Y ++ IC+ Y+I LIADE+ G GRTG +F + I P + ++
Sbjct: 232 VQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA 291
Query: 491 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG++ GY P+ + D F H ++YSG+P+A AL L I ++NI
Sbjct: 292 KGLSSGYAPIGGSIVCD----EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENI 347
Query: 551 LQRI----SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
L + + +K+ +ALT HP + + GM+ + + + + S+ +
Sbjct: 348 LDHVRNVAAPYLKEKWEALTD---HPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIG 404
Query: 607 ------ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
N L++R +G+ + + PP ++ EI M I ++ +E
Sbjct: 405 YICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDE 451
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 190/414 (45%), Gaps = 24/414 (5%)
Query: 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 309
T G+R +D + W G+ I A+ +Q L + + P +L+EK+++L
Sbjct: 50 TEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATL 109
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
T L F+ + G++AV+ AL+ S Y G KK+ I + YHG T A T
Sbjct: 110 TPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGR 169
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK-------- 421
+ ++ +++P+ R + GN + E L+ L+++ ++
Sbjct: 170 TGNWPNFDIAQDRISFLSSPNPR--HAGNRSQEAF------LDDLVQEFEDRIESLGPDT 221
Query: 422 XXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA- 480
EP++ +GG+I+ + Y + IC ++I I+DE+ G GR G++FA E
Sbjct: 222 IAAFLAEPIL-ASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVF 280
Query: 481 EIWPDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 539
+ PD + +KG+T GY+PL L ++ F + ++YS P+AC AAL
Sbjct: 281 GVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
A +E+ ++ I+ + + AL SL P + R G++ +++ T
Sbjct: 341 ANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTA 400
Query: 600 SKKFFVAALKNE-----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
K F + L++RP+G+ + PP I+++ +I M + + Q E+
Sbjct: 401 EDKAFTLKIDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 184/415 (44%), Gaps = 23/415 (5%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLT 310
G + +D ++ W G+ +A + Q+ +L + TH V++LS L+ +T
Sbjct: 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVT 107
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
FY + G+ +V+ ++M YW +G KK I N YHG T+G ++ ++
Sbjct: 108 PAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMK 167
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKXXXXXXEP 429
E + I P K + +E A LE +L+ +K EP
Sbjct: 168 YMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEP 227
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+Q AGG+I+ + Y + IC Y++ L+ADE+ G GRTG++F +H PD
Sbjct: 228 -IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTA 286
Query: 490 SKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDN 549
+KG++ GYLP+ V F H +YSG+P+ A A + +
Sbjct: 287 AKGLSSGYLPIGAVFVG---KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEG 343
Query: 550 ILQRISQD----MKKITKALTSLITHPKIINFRQKGMIWAFDVI--------IEDPEQIE 597
I+QR+ D M+K + S H + + R GM+ AF ++ D +I
Sbjct: 344 IVQRVKDDIGPYMQKRWRETFSRFEH--VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIG 401
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVI 652
T + F +N L++R G+ + PP ++ + E+ M + + E ++ +
Sbjct: 402 TLCRDIF---FRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTL 453
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 179/405 (44%), Gaps = 37/405 (9%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL--T 310
GKRYLD S W G+ + +A QL L + S +H+P IKL+EKL+
Sbjct: 48 GKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQ-SHEPAIKLAEKLNEWLGG 106
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+Y + F+ + G+ A E A K++ Y+ KG ++ KF YHG T A T
Sbjct: 107 EYVI---FFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXAATGQA 163
Query: 371 SFKEIYTSLLNKTYIITTPD--------SRNINKGNSANEIARCAIFDLEILLKKNHNKX 422
+ Y + +T PD NI E+ R ++L +
Sbjct: 164 QRRYQYEPFASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXTWELSETI------- 216
Query: 423 XXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
EP++ GG++ Y K V E C + LI+DE+ G GRTGK F + ++
Sbjct: 217 AAFIXEPII-TGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNYDV 275
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 542
PD + +KGIT YLPLS F H +++ GNP AC AL L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 543 EIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVI--IEDPEQIETF 599
EI +N+++R +Q + + L I HP + + R KG++ +++ E E I+
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDND 395
Query: 600 SKKFFVAALKNELLLRPIG----------NTVYLMPPYILNKNEI 634
V A K + L+ IG N + L PP +++ EI
Sbjct: 396 KIASVVNACKEKGLI--IGRNGXTTAGYNNILTLAPPLVISSEEI 438
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 186/400 (46%), Gaps = 13/400 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 305
++ G+RYLDA S W + G + + +A K Q ++ H ++ + V+ LSEK
Sbjct: 53 IVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQTVM-LSEK 111
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++ + G FY + G+ A + +KM + +G K+K + N+YHG T + +
Sbjct: 112 LVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS 171
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNS-ANEIARCAIFDLEILLKKNHNKXX 423
+T + + ++ L +T P R +G + A +AR A + + ++ +
Sbjct: 172 MTG-KPYNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARLARELEDTITREGADTIA 230
Query: 424 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 231 GFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTYDFM 289
Query: 484 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 542
PD + S +T G+ P+ ++++ D F H + SG+P+ C AL +
Sbjct: 290 PDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALKAI 349
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 597
++ + + + + + + L + P I +R G +WA + + + P +
Sbjct: 350 DVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKPTKTPFDANL 409
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ S++ L+ RP+G ++ L PP+IL + ++ M
Sbjct: 410 SVSERIANTCTDLGLICRPLGQSIVLCPPFILTEAQMDEM 449
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 193/424 (45%), Gaps = 23/424 (5%)
Query: 238 RINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297
R+ + + S L+ G++ D++S W GH+ I +A+ QL+ L++ H
Sbjct: 34 RLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHP 93
Query: 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYH 357
+L+EK++ LT L H F+ G+ A+KM YW KG K K I YH
Sbjct: 94 LSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYH 153
Query: 358 GETLGALAVTNIQSFKEIYTSLLNK------TYIITTPDSRNINKGNS---ANEIARCAI 408
G + ++ + ++++ + T + + SR + K A+E+
Sbjct: 154 GVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADEL----- 208
Query: 409 FDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
L+++ + + EPL AG ++ + YLK REICN +NI L+ DE+ G
Sbjct: 209 --LKLIELHDASNIAAVFVEPLAGSAGVLVPPEG-YLKRNREICNQHNILLVFDEVITGF 265
Query: 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTD---XXXXXXXXXXXXXXFLHS 525
GRTG F + + PD +C++K +T G +P+ V+ + F H
Sbjct: 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG 325
Query: 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 585
++YS +P+AC A LA L + K+N++Q +++ KAL + +I+ R G+ A
Sbjct: 326 YTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGA 385
Query: 586 FDVIIEDPEQI-ETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644
+ D + I F +A K +R G+T+ P + ++ + A+ +
Sbjct: 386 IQIAPRDGDAIVRPFEAG--MALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEV 443
Query: 645 FNEL 648
N+L
Sbjct: 444 LNKL 447
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 183/400 (45%), Gaps = 13/400 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 305
++ +G+RYLDA S W + G + + A K Q + H ++ + V+ LSEK
Sbjct: 55 IVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVM-LSEK 113
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++ + G FY + G+ A + +KM + +G K+K + N+YHG T + +
Sbjct: 114 LVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS 173
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE--IARCAIFDLEILLKKNHNKXX 423
+T + + ++ L +T P + E +AR A E + ++ +
Sbjct: 174 MTG-KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIA 232
Query: 424 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 233 GFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFT 291
Query: 484 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 542
PD + SK +T G+ P+ ++++ + F H + SG+P+ C AL +
Sbjct: 292 PDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAI 351
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 597
++ + + + + + + + L + P I +R G +WA + + + +
Sbjct: 352 DVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNL 411
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ S++ L+ RP+G +V L PP+IL + ++ M
Sbjct: 412 SVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEM 451
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 182/415 (43%), Gaps = 17/415 (4%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 305
++ +G+RYLDA S W + G + + A K Q + H + + + LSEK
Sbjct: 61 IVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ-TVXLSEK 119
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++ + G FY + G+ A + +K + +G K+K + N+YHG T + +
Sbjct: 120 LVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS 179
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE--IARCAIFDLEILLKKNHNKXX 423
T + + ++ L +T P + E +AR A E + ++ +
Sbjct: 180 XTG-KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIA 238
Query: 424 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 239 GFFAEP-VXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFT 297
Query: 484 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 542
PD + SK +T G+ P ++++ + F H + SG+P+ C AL +
Sbjct: 298 PDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAI 357
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 597
++ + + + + + + + L + P I +R G WA + + + +
Sbjct: 358 DVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKASKTPFDGNL 417
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNE----IQHMTSAIFQTFNEL 648
+ S++ L+ RP+G +V L PP+IL + + + A+ + F E+
Sbjct: 418 SVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQXDEXFDKLEKALDKVFAEV 472
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 178/392 (45%), Gaps = 48/392 (12%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP-VIKLSEKLSSLT 310
GK YLD +S VN GH+ + +ALK Q+ KL HV SNL P +L+ KL
Sbjct: 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNLYENPWQEELAHKLVKHF 83
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ G F+ + G +VE A+K++ YW +KG NK KFI +NS+HG T G+L+ T
Sbjct: 84 -WTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFISFENSFHGRTYGSLSATGQP 141
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPL 430
F + + L+ + + D++ + K + E +
Sbjct: 142 KFHKGFEPLVPG--------------------FSYAKLNDIDSVYKLLDEETAGIIIE-V 180
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG+ +L ++EIC ++ LI DE+ G GRTG+F+A +H + PD + L+
Sbjct: 181 IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA 240
Query: 491 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG+ GG +P+ ++ + H ++ GNPLAC A ++ K +
Sbjct: 241 KGLGGG-VPIGAILAREEVAQSFTPGS------HGSTFGGNPLACRAGTVVVDEVEK--L 291
Query: 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610
L + + + L L + +G++ ++E K + + AL+
Sbjct: 292 LPHVREVGNYFKEKLKELGKG----KVKGRGLMLGL--------ELERECKDYVLKALEK 339
Query: 611 ELLLR-PIGNTVYLMPPYILNKNEIQHMTSAI 641
LL+ G + +PP I+ K I S +
Sbjct: 340 GLLINCTAGKVLRFLPPLIIQKEHIDRAISVL 371
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 180/400 (45%), Gaps = 13/400 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 305
++ +G+RYLDA S + + G + + A K Q + H ++ + V+ LSEK
Sbjct: 61 IVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQTVM-LSEK 119
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++ + G FY + G+ A + +KM + +G K+K + N+YHG T + +
Sbjct: 120 LVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGATAVSAS 179
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE--IARCAIFDLEILLKKNHNKXX 423
+T + ++ L +T P + E +AR A E + ++ +
Sbjct: 180 MTGF-PYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIA 238
Query: 424 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 239 GFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYDFT 297
Query: 484 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 542
PD + S +T G+ P+ ++++ + F H + SG+P+ C AL +
Sbjct: 298 PDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAI 357
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 597
++ + + + + + + + L + P I +R G +WA + + + +
Sbjct: 358 DVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNL 417
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ S++ L+ P+G +V L PP+IL + ++ M
Sbjct: 418 SVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEM 457
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 183/389 (47%), Gaps = 37/389 (9%)
Query: 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 313
K+YLD S V G++++ N +K Q++KL H SNL + I + K +
Sbjct: 36 KKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT--SNLYYNENIAAAAKNLAKAS-A 92
Query: 314 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373
L F+ + G ++E A K + Y +NKG + +FI ++S+HG TLGAL++T + ++
Sbjct: 93 LERVFFTNSGTESIEGAXKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQ 151
Query: 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQC 433
+ + L++ D ++ K NE CAI LE VQ
Sbjct: 152 KPFKPLISGVKFAKYNDISSVEK--LVNE-KTCAII-LES-----------------VQG 190
Query: 434 AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGI 493
GG+ + + K +R++C+ +I LIADEI G GR+GKFFA EHA+I PD +K +
Sbjct: 191 EGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAKAL 250
Query: 494 TGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQR 553
G + V+ H +Y GNPL C A EIF ++ IL+
Sbjct: 251 GCGLSVGAFVINQKVASNSLEAGD------HGSTYGGNPLVCAGVNAVFEIFKEEKILEN 304
Query: 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613
+++ + ++L LI ++KG+ + + ++ ++ +K +N LL
Sbjct: 305 VNKLTPYLEQSLDELINEFDFCK-KRKGLGFXQGLSLDKSVKVAKVIQK----CQENALL 359
Query: 614 LRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
L G N + +PP IL K I + +
Sbjct: 360 LISCGENDLRFLPPLILQKEHIDEXSEKL 388
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 166/396 (41%), Gaps = 21/396 (5%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
+G+RYLD S V GH + + + + Q +L V S + + + + +L+
Sbjct: 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVG 86
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+ S G+ A E A+K++ Y +G + K I SYHG +LG+LA + + +
Sbjct: 87 LPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGA 146
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 431
+E+YT L+ P G E R +L ++ EP+V
Sbjct: 147 RRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA------LLEREGPETVAAFMAEPVV 200
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH-AEIWPDFLCLS 490
+ + Y + VR+IC+ I IADE+ G GR G A + + PD L
Sbjct: 201 GASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLG 260
Query: 491 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG+ GY PL+ ++ F+H +Y+G+P++ A L+ L+I ++++
Sbjct: 261 KGLAAGYAPLAGLLAAP--QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDL 318
Query: 551 LQRISQDMKKITKALTSLITH-PKIINFR---QKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+ ++ L +L P+++ R + D+ + + + A
Sbjct: 319 TGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAA 378
Query: 607 ALKNELLLRPI--------GNTVYLMPPYILNKNEI 634
ALK L+ P G+ + L PP + E+
Sbjct: 379 ALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEV 414
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 179/385 (46%), Gaps = 43/385 (11%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPVIKLSEKLSSLTQ 311
G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P ++L+E LS T
Sbjct: 27 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQMELAELLSKNTF 84
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
G F+ + G A E A+K++ + K K + + NS+HG TLG+L T
Sbjct: 85 G--GKVFFANTGTEANEAAIKIA-RKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPK 141
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 431
+++ + L+ + ++ + S + CA+F EP +
Sbjct: 142 YQKPFEPLVPGFEYFEFNNVEDLRRKMSED---VCAVF-----------------LEP-I 180
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA + + PD L +K
Sbjct: 181 QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAK 240
Query: 492 GITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
G+ GG +P+ V+ + H ++ GNPLAC A + ++ K+ L
Sbjct: 241 GLGGG-VPIGAVIVNERANVLEPGD-------HGTTFGGNPLACRAGVTVIKELTKEGFL 292
Query: 552 QRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610
+ + + + K L + ++ + R G++ + E +++ +N
Sbjct: 293 EEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF------REEVSNREVATKCFEN 346
Query: 611 ELLLRPIG-NTVYLMPPYILNKNEI 634
+LL+ P G NT+ +PP + EI
Sbjct: 347 KLLVVPAGNNTIRFLPPLTVEYGEI 371
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 175/387 (45%), Gaps = 42/387 (10%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKLSSLT 310
G RY+D +S++ GH + I AL +Q N++ + S H + EK++ LT
Sbjct: 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRV--TLTSRAFHSDQLGPWYEKVAKLT 91
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYN--KGFLNKKKFICLQNSYHGETLGALAVTN 368
++ + GA AVE A+K + + Y+ K N+ + I ++++HG T+GA+++++
Sbjct: 92 NKEM--VLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSS 149
Query: 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXE 428
+ +K + +L +I D + + N A F LE
Sbjct: 150 NEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN----TAAFILE---------------- 189
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
+Q G+ + + +LK E+C N+ +ADEI G GRTGK FAC+ + PD
Sbjct: 190 -PIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYI 248
Query: 489 LSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKD 548
L + GG P+S H ++ GNPLAC ++A LE+ ++
Sbjct: 249 LGXALGGGVFPISCAAANRDILGVFEPGS------HGSTFGGNPLACAVSIAALEVLEEE 302
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL 608
+ +R Q +K+ L I +P I R KG+ + IE E + ++ A L
Sbjct: 303 KLTERSLQLGEKLVGQLKE-IDNPMITEVRGKGLF----IGIELNEPARPYCEQLKAAGL 357
Query: 609 KNELLLRPIGNTVYLMPPYILNKNEIQ 635
L N + + PP ++++ +++
Sbjct: 358 ---LCKETHENVIRIAPPLVISEEDLE 381
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 162/391 (41%), Gaps = 44/391 (11%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G Y+D + + V GH N + +A+K Q L M L + L+++
Sbjct: 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQTLPTPMRGEFYRTLTAILP 101
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+L F + G A E ALK + + +KKF+ + G T+G+L+VT
Sbjct: 102 PELNRVFPVNSGTEANEAALK------FARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPK 155
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 431
++E + L+ I D+E L + + EP V
Sbjct: 156 YREPFLPLVEPVEFIP--------------------YNDVEALKRAVDEETAAVILEP-V 194
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q GG+ +L+ REI LI DEI G GRTGK FA EH I PD L L+K
Sbjct: 195 QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAK 254
Query: 492 GITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
+ GG +PL + + + H ++ GNPLA A +A + + +
Sbjct: 255 ALGGG-VPLGVAVMREEVARSMPKGG------HGTTFGGNPLAMAAGVAAIRYLERTRLW 307
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
+R ++ + L + I PKI R G++ ++ + I K+ V AL+
Sbjct: 308 ERAAELGPWFMEKLRA-IPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQA- 365
Query: 612 LLLRPIGNTV-YLMPPYILNKNEIQHMTSAI 641
G TV +PP ++ K +++ + A+
Sbjct: 366 ------GPTVIRFLPPLVIEKEDLERVVEAV 390
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 176/385 (45%), Gaps = 43/385 (11%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPVIKLSEKLSSLTQ 311
G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P +L+E LS T
Sbjct: 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQXELAELLSKNTF 96
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
G F+ + G A E A+K++ + K K + + NS+HG TLG+L T
Sbjct: 97 G--GKVFFANTGTEANEAAIKIA-RKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPK 153
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 431
+++ + L+ + ++ + S + CA+F EP +
Sbjct: 154 YQKPFEPLVPGFEYFEFNNVEDLRRKXSED---VCAVF-----------------LEP-I 192
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA + + PD L +K
Sbjct: 193 QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLTTAK 252
Query: 492 GITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
G+ GG +P+ V+ + H ++ GNPLAC A + ++ K+ L
Sbjct: 253 GLGGG-VPIGAVIVNERANVLEPGD-------HGTTFGGNPLACRAGVTVIKELTKEGFL 304
Query: 552 QRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610
+ + + + K L ++ + R G+ + E +++ +N
Sbjct: 305 EEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQF------REEVSNREVATKCFEN 358
Query: 611 ELLLRPIG-NTVYLMPPYILNKNEI 634
+LL+ P G NT+ +PP + EI
Sbjct: 359 KLLVVPAGNNTIRFLPPLTVEYGEI 383
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 179/390 (45%), Gaps = 35/390 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S+L GK Y+D VN GH++ + +AL Q +K H + T++PV++L++K
Sbjct: 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG-NGYTNEPVLRLAKK 89
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L T F+ + GA A E ALK++ + +++ +K + +N++HG TL ++
Sbjct: 90 LIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVS 147
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 425
++ + + L I +IN ++ + + CA+
Sbjct: 148 AGGQPAYSQDFAPLPAD---IRHAAYNDINSASALIDDSTCAVI---------------- 188
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP +Q GG++ + +L+ +RE+CN +N LI DE+ G GRTG+ +A H + PD
Sbjct: 189 -VEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
L +K + GG+ P+ ++ T+ H +Y GNPLA A LE+
Sbjct: 247 LLTTAKALGGGF-PVGALLATEECARVMTVGT------HGTTYGGNPLASAVAGKVLELI 299
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFF 604
N +L + Q + L ++ + + R G++ + + Q + S++
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQE-- 357
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEI 634
AA ++L GN V P +++ E+
Sbjct: 358 -AAKAGVMVLIAGGNVVRFAPALNVSEEEV 386
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 179/405 (44%), Gaps = 31/405 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ YLD V GH + + A++ QL KL H L ++P ++L E ++
Sbjct: 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99
Query: 313 KLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQ 370
+ G+ AVE A+K++ + + I +YHG T LA+T +
Sbjct: 100 DFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153
Query: 371 SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEP 429
+ + Y P I++ ++ I R IF + EP
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----AAPEDIAAIVIEP 207
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
VQ +GG +++ +R +C+ + I LIADE+ G GRTG FA E + PD
Sbjct: 208 -VQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF 266
Query: 490 SKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K I GG+ PL+ V +Y+GNP+AC AAL L++F ++N
Sbjct: 267 AKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVAALEVLKVFEQEN 319
Query: 550 ILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK--KFFVA 606
+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + +K VA
Sbjct: 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLTAEIVA 378
Query: 607 ALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 178/405 (43%), Gaps = 31/405 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ YLD V GH + + A++ QL KL H L ++P ++L E ++
Sbjct: 40 GREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99
Query: 313 KLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQ 370
+ G+ AVE A+K++ + + I +YHG T LA+T +
Sbjct: 100 DFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153
Query: 371 SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEP 429
+ + Y P I++ ++ I R IF + EP
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----AAPEDIAAIVIEP 207
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E + PD
Sbjct: 208 -VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF 266
Query: 490 SKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K I GG+ PL+ V +Y+GNP+AC AAL L++F ++N
Sbjct: 267 AKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVAALEVLKVFEQEN 319
Query: 550 ILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK--KFFVA 606
+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + +K VA
Sbjct: 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLTAEIVA 378
Query: 607 ALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 178/405 (43%), Gaps = 31/405 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ YLD V GH + + A++ QL KL H L ++P ++L E ++
Sbjct: 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99
Query: 313 KLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQ 370
+ G+ AVE A+K++ + + I +YHG T LA+T +
Sbjct: 100 DFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153
Query: 371 SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEP 429
+ + Y P I++ ++ I R IF + EP
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----AAPEDIAAIVIEP 207
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E + PD
Sbjct: 208 -VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF 266
Query: 490 SKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K I GG+ PL+ V +Y+GNP+AC AAL L++F ++N
Sbjct: 267 AKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVAALEVLKVFEQEN 319
Query: 550 ILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK--KFFVA 606
+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + +K VA
Sbjct: 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLTAEIVA 378
Query: 607 ALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 174/424 (41%), Gaps = 58/424 (13%)
Query: 257 LDAISSWWVNLFGHSNSY---INKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLTQY 312
DA +SWW G ++ + + + + HVM ++P +K +E L + +
Sbjct: 383 FDACASWWTQ--GPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKG 440
Query: 313 KLGHCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK--------KFICLQNSYHGETLGA 363
++ +G++A+E+ALKM+F + + F K I L+ SYHG+TLGA
Sbjct: 441 WASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA 500
Query: 364 LAVTNIQSF-----KEIYTS---LLNKTYIITTPDSRNINKGNSANEIA--------RCA 407
+ + + YT L+ + + S NI+ S +EIA R
Sbjct: 501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDE 560
Query: 408 IFD-----------LEILLKKNHNKXXXXXX---------EPLVQCAGGMIMYDSIYLKL 447
IFD L K+ + EP++ AGGM M D ++ ++
Sbjct: 561 IFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRV 620
Query: 448 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTD 507
+ C N I +I DE+ G R G E PD C +K +TGG +PL++ + TD
Sbjct: 621 LVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATD 680
Query: 508 XXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI-----T 562
LH HSYS + + C A ++ F I+ K +
Sbjct: 681 AVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDE 740
Query: 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ--IETFSKKFFVAALKNELLLRPIGNT 620
+ + + +H + G ++A ++ + ++K + ++ + RP+GN
Sbjct: 741 ELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNV 800
Query: 621 VYLM 624
+YLM
Sbjct: 801 IYLM 804
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 177/405 (43%), Gaps = 31/405 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ YLD V GH + + A++ QL KL H L ++P ++L E ++
Sbjct: 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99
Query: 313 KLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQ 370
+ G+ AVE A+K++ + + I +YHG T LA+T +
Sbjct: 100 DFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153
Query: 371 SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEP 429
+ + Y P I++ ++ I R IF + EP
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----AAPEDIAAIVIEP 207
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
VQ GG +++ +R +C+ + I LIADE G GRTG FA E + PD
Sbjct: 208 -VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTF 266
Query: 490 SKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K I GG+ PL+ V +Y+GNP+AC AAL L++F ++N
Sbjct: 267 AKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVAALEVLKVFEQEN 319
Query: 550 ILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK--KFFVA 606
+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + +K VA
Sbjct: 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLTAEIVA 378
Query: 607 ALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 33/324 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
S++ GK Y+D V GH + + +ALK+Q L H SN+ T++P ++L
Sbjct: 49 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT--SNVFTNEPALRLGR 106
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL T + + + G A E A K++ HY + K K I N++HG +L +
Sbjct: 107 KLIDATFAE--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTV 164
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 424
+V + + + G +I DL + +
Sbjct: 165 SVGGQPKYSDGF--------------------GPKPADIIHVPFNDLHAVKAVMDDHTCA 204
Query: 425 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
EP +Q GG+ +LK +R++C+ + L+ DE+ G GRTG FA H + P
Sbjct: 205 VVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP 263
Query: 485 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 544
D L +K + GG+ P+S ++TT H +Y GNPLAC A A +I
Sbjct: 264 DILTSAKALGGGF-PVSAMLTTQEIASAFHVGS------HGSTYGGNPLACAVAGAAFDI 316
Query: 545 FNKDNILQRISQDMKKITKALTSL 568
N +LQ I ++ + L ++
Sbjct: 317 INTPEVLQGIHTKRQQFVQHLQAI 340
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 191/450 (42%), Gaps = 38/450 (8%)
Query: 209 SKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLITFSGKRYLDAISSWWVNLF 268
S+ L +Q+ A +G+ P + + D ++LI F S V
Sbjct: 31 SQELQARKQSAVAAGVGVTLPVYVVAAGGGVLADADGNQLIDFG--------SGIAVTTV 82
Query: 269 GHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASA 326
G+S + A+ Q+ H ++ +K++E L+ LT ++ + S GA A
Sbjct: 83 GNSAPAVVDAVTQQVAAFTHTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNS-GAEA 141
Query: 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYI 385
VE A+K++ + + ++ + ++YHG T +A+T Q +K + N+ Y
Sbjct: 142 VENAVKIA------RAYTRRQAVVVFDHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYR 195
Query: 386 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYL 445
+ P S G + A DL I + + EP V GG ++ +L
Sbjct: 196 V--PTSYPFRDGETDGAAAAAHALDL-INKQVGADNVAAVVIEP-VHGEGGFVVPAPGFL 251
Query: 446 KLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMT 505
+++ C + +ADE+ G RTG FACEH + PD + +KGI GG LPLS V
Sbjct: 252 GALQKWCTDNGAVFVADEVQTGFARTGALFACEHENVVPDLIVTAKGIAGG-LPLSAV-- 308
Query: 506 TDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMKKIT 562
+Y GNPLAC AALA ++ ++N++ R I + M
Sbjct: 309 ----TGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIERENLVARARAIGETMLSRL 364
Query: 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIET-FSKKFFVAALKNELLL---RPIG 618
AL + P+I R +G + A +++ + + +K+ AA L++ G
Sbjct: 365 GALAA--ADPRIGEVRGRGAMIAVELVKPGTTEPDADLTKRVAAAAHAQGLVVLTCGTYG 422
Query: 619 NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
N + +PP + + + + F E+
Sbjct: 423 NVLRFLPPLSMPDHLLDEGLDILAAVFAEV 452
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 179/401 (44%), Gaps = 39/401 (9%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 306
L G++Y D +SS+ GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 33 LWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 90
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 364
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 91 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 148
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 424
+ + + + + + II D + + +A +
Sbjct: 149 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 192
Query: 425 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 193 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 248
Query: 485 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 544
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 249 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEV 302
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 303 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 357
Query: 605 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 644
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 358 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 398
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 179/401 (44%), Gaps = 39/401 (9%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 306
L G++Y D +SS+ GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 70 LWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 127
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 364
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 128 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 424
+ + + + + + II D + + +A +
Sbjct: 186 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 229
Query: 425 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 230 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 285
Query: 485 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 544
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 286 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEV 339
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 340 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 394
Query: 605 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 644
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 395 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 435
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 39/401 (9%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 306
L G++Y D +SS GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 70 LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 127
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 364
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 128 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 424
+ + + + + + II D + + +A +
Sbjct: 186 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 229
Query: 425 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 230 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 285
Query: 485 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 544
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 286 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEV 339
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 340 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 394
Query: 605 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 644
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 395 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 435
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 164/397 (41%), Gaps = 38/397 (9%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G R +D S V G+S + +A+++Q+ H ++ + + E+L+ LT
Sbjct: 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPV 119
Query: 313 KLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
+ + S G+ AVE A+K++ + + K + ++YHG T +A+T +
Sbjct: 120 RGDKRSALFNS-GSEAVENAVKIARSHTH------KPAVVAFDHAYHGRTNLTMALTAKV 172
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK---------NHN 420
+K+ + + Y P S E+A D E+ K+ +
Sbjct: 173 MPYKDGFGPFAPEIY--RAPLSYPFRDAEFGKELAT----DGELAAKRAITVIDKQIGAD 226
Query: 421 KXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
EP +Q GG I+ +L + + C ++ IADE+ G RTG FACEH
Sbjct: 227 NLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALA 540
I PD + + GI GG LPLS V +Y GNP+AC AALA
Sbjct: 286 GIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVSGL------GGTYGGNPIACAAALA 338
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
T+E + ++ R Q K + L L +I + R +G + A +++ + +
Sbjct: 339 TIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDAD 398
Query: 600 SKKFFVAALKNE----LLLRPIGNTVYLMPPYILNKN 632
K A L GN V +PP + +
Sbjct: 399 LTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDD 435
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 39/401 (9%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 306
L G++Y D +SS GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 70 LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 127
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 364
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 128 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 424
+ + + + + + II D + + +A +
Sbjct: 186 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 229
Query: 425 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 230 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 285
Query: 485 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 544
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 286 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HFSTYGGNPLGCRVAIAALEV 339
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 340 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 394
Query: 605 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 644
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 395 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 435
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 170/402 (42%), Gaps = 21/402 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ LD S + GH + I + KL+H + S + +PV+ L+ +L+++T
Sbjct: 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSGMLSRPVVDLATRLANITPP 100
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L S GA + E A++M+ K K + + S+HG T A + T
Sbjct: 101 GLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 154
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQ 432
K + + + I R + N A + + +++ +++ EP++
Sbjct: 155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILS 214
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
+GG+I Y+ ++ C + LI DE G GRTG FAC+ + PD L LSK
Sbjct: 215 -SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKT 273
Query: 493 ITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
+ G LPL+ ++T+ +L ++ +PL L L++ +D ++
Sbjct: 274 LGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVA 328
Query: 553 RISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE--DPEQIETFSKKFFVAALK 609
R + ++ + L L+ I + R +G++ +++ + E + K +
Sbjct: 329 RANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN 388
Query: 610 -----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
N + L +G + PP ++++EI S + Q
Sbjct: 389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 170/402 (42%), Gaps = 21/402 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ LD S + GH + I + KL+H + S + +PV+ L+ +L+++T
Sbjct: 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEMLSRPVVDLATRLANITPP 100
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L S GA + E A++M+ K K + + S+HG T A + T
Sbjct: 101 GLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 154
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQ 432
K + + + I R + N A + + +++ +++ EP++
Sbjct: 155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILS 214
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
+GG+I Y+ ++ C + LI DE G GRTG FAC+ + PD L LSK
Sbjct: 215 -SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKT 273
Query: 493 ITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
+ G LPL+ ++T+ +L ++ +PL L L++ +D ++
Sbjct: 274 LGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVA 328
Query: 553 RISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE--DPEQIETFSKKFFVAALK 609
R + ++ + L L+ I + R +G++ +++ + E + K +
Sbjct: 329 RANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN 388
Query: 610 -----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
N + L +G + PP ++++EI S + Q
Sbjct: 389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 170/402 (42%), Gaps = 21/402 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ LD S + GH + I + KL+H + S + +PV+ L+ +L+++T
Sbjct: 41 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSGMLSRPVVDLATRLANITPP 99
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L S GA + E A++M+ K K + + S+HG T A + T
Sbjct: 100 GLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 153
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQ 432
K + + + I R + N A + + +++ +++ EP++
Sbjct: 154 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILS 213
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
+GG+I Y+ ++ C + LI DE G GRTG FAC+ + PD L LSK
Sbjct: 214 -SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKT 272
Query: 493 ITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
+ G LPL+ ++T+ +L ++ +PL L L++ +D ++
Sbjct: 273 LGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVA 327
Query: 553 RISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE--DPEQIETFSKKFFVAALK 609
R + ++ + L L+ I + R +G++ +++ + E + K +
Sbjct: 328 RANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN 387
Query: 610 -----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
N + L +G + PP ++++EI S + Q
Sbjct: 388 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 429
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 170/402 (42%), Gaps = 21/402 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ LD S + GH + I + KL+H + S + +PV+ L+ +L+++T
Sbjct: 40 GRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEMLSRPVVDLATRLANITPP 98
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L S GA + E A++M+ K K + + S+HG T A + T
Sbjct: 99 GLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 152
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQ 432
K + + + I R + N A + + +++ +++ EP++
Sbjct: 153 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILS 212
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
+GG+I Y+ ++ C + LI DE G GRTG FAC+ + PD L LSK
Sbjct: 213 -SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKT 271
Query: 493 ITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
+ G LPL+ ++T+ +L ++ +PL L L++ +D ++
Sbjct: 272 LGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVA 326
Query: 553 RISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE--DPEQIETFSKKFFVAALK 609
R + ++ + L L+ I + R +G++ +++ + E + K +
Sbjct: 327 RANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN 386
Query: 610 -----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
N + L +G + PP ++++EI S + Q
Sbjct: 387 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 167/402 (41%), Gaps = 40/402 (9%)
Query: 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK-LSSLTQY 312
KRY D +S++ GH + I A+ NQ L + S + + E+ L++L Y
Sbjct: 65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TICSRAFFSVPLGICERYLTNLLGY 122
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYN--KGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ GA A E A K+ + Y K N K + +N++ G TLG ++ + +
Sbjct: 123 D--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTK 180
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPL 430
N G A + ++ DLE L ++ +
Sbjct: 181 KCTS--------------------NFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEP 220
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK H + PD + L
Sbjct: 221 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG 280
Query: 491 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 550
K ++GG+ P+S V+ D H +Y GNPLA + L + + +
Sbjct: 281 KALSGGHYPISAVLANDDIMLVIKPGE------HGSTYGGNPLAASICVEALNVLINEKL 334
Query: 551 LQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 609
+ + + L + KI+ + R KG++ A + E ++ K +
Sbjct: 335 CENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLK-----LKE 389
Query: 610 NELLLRPIGN-TVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
N L+ R + + T+ L PP + K ++ T I +T DE
Sbjct: 390 NGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431
>pdb|1XPI|A Chain A, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
pdb|1XPI|B Chain B, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
Length = 231
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 29/227 (12%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGIVHRLDKNS 87
I+YED+ I++LNK +G VH G LS + + L + P FL +VHRLD+++
Sbjct: 7 ILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFL------ELVHRLDRDT 59
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTV 146
SG+++VAK + L QL+ +Q+ YLA+V G + + + A +++N + V
Sbjct: 60 SGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV 119
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ KP+ T + ER A +L+RC+ TGRTHQIRVH Q+ GH I D+
Sbjct: 120 RVSQEGKPSETRFKVEERYAFA-------TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDR 172
Query: 204 YG-KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
YG +++ + L NR LHA L HP + RI P D
Sbjct: 173 YGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM--RIEAPMD 217
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 162/402 (40%), Gaps = 40/402 (9%)
Query: 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK-LSSLTQY 312
+RY D +S++ GH + I A+ NQ KL + S + + E+ L++L Y
Sbjct: 46 RRYYDFLSAYSSVNQGHCHPDILNAMINQAKKL--TICSRAFFSDSLGVCERYLTNLFGY 103
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYN--KGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ GA A E A K+ + Y K N K I N++ G TLG ++ + +
Sbjct: 104 D--KVLMMNTGAEASETAYKLCRKWGYEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDK 161
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPL 430
K N G + DLE L K+ +
Sbjct: 162 KCKN--------------------NFGPFVPNFLKVPYDDLEALEKELQDPNVCAFIVEP 201
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
VQ G+I+ Y V +C YN+ +ADE+ G GRTGK H + PD + L
Sbjct: 202 VQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLG 261
Query: 491 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 550
K ++GG+ P+S ++ D H +Y GNPLA + L++ + +
Sbjct: 262 KALSGGHYPISAILANDDVMLVLKPGE------HGSTYGGNPLAAAICVEALKVLINEKL 315
Query: 551 LQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 609
+ + + L + K++ R KG++ A + D + KF +
Sbjct: 316 CENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIE-FKNDLVNVWDICLKF----KE 370
Query: 610 NELLLRPIGN-TVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
N L+ R + + TV L PP + K ++ T I +T D+
Sbjct: 371 NGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKTVKFFDD 412
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 166/423 (39%), Gaps = 58/423 (13%)
Query: 257 LDAISSWWVNLFGHSNSY---INKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLTQY 312
DA +SWW G ++ + + + HV ++P +K +E L + +
Sbjct: 383 FDACASWWTQ--GPDPTFQAELAREXGYTAARFGHVXFPENVYEPALKCAELLLDGVGKG 440
Query: 313 KLGHCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK--------KFICLQNSYHGETLGA 363
++ +G++A+E+ALK +F + + F K I L+ SYHG+TLGA
Sbjct: 441 WASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA 500
Query: 364 LAVTNIQSF-----KEIYTS---LLNKTYIITTPDSRNINKGNSANEIA--------RCA 407
+ + YT L+ + + S NI+ S +EIA R
Sbjct: 501 XEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDE 560
Query: 408 IFD-----------LEILLKKNHNKXXXXXX---------EPLVQCAGGMIMYDSIYLKL 447
IFD L K+ + EP++ AGG D ++ ++
Sbjct: 561 IFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRV 620
Query: 448 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTD 507
+ C N I +I DE+ G R G E PD C +K +TGG +PL++ + TD
Sbjct: 621 LVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGXVPLAVTLATD 680
Query: 508 XXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI-----T 562
LH HSYS + C A ++ F I+ K +
Sbjct: 681 AVFDSFSGDSKLKALLHGHSYSAHAXGCATAAKAIQWFKDPETNHNITSQGKTLRELWDE 740
Query: 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ--IETFSKKFFVAALKNELLLRPIGNT 620
+ + + +H + G ++A ++ + ++K + ++ + RP+GN
Sbjct: 741 ELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIXLREDGIFTRPLGNV 800
Query: 621 VYL 623
+YL
Sbjct: 801 IYL 803
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 169/397 (42%), Gaps = 38/397 (9%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ- 311
G R +D S V G+S + A+++Q+ + H ++ + ++E+L+ +T
Sbjct: 77 GNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPG 136
Query: 312 --YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-- 367
K F + GA AVE ++K++ + K+ + +YHG T +A+T
Sbjct: 137 SGEKRTVLF--NSGAEAVENSIKVA------RAHTRKQAVVAFDYAYHGRTNLTMALTAK 188
Query: 368 ------NIQSFK-EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 420
F EIY + ++ Y D G A E A + D +I
Sbjct: 189 SMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAERA-INLIDKQI----GAA 243
Query: 421 KXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
EP + GG I+ +L ++ C + ++ IADE+ G RTG FAC+H
Sbjct: 244 NLAAVIIEP-IAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFACDHE 302
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALA 540
+ PD + + GI G+ PLS V ++ GNP+AC AALA
Sbjct: 303 NVEPDLIVTAXGIADGF-PLSAVTGRAEIMDAPHTSGL------GGTFGGNPVACAAALA 355
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIET 598
T+E +D +++R Q + + L L ++ + R +G + A +++ E
Sbjct: 356 TIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAEPDAA 415
Query: 599 FSKKFFVAALKNELLLRP---IGNTVYLMPPYILNKN 632
++K AA +++ GN + L+PP ++
Sbjct: 416 LTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDE 452
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/415 (22%), Positives = 183/415 (44%), Gaps = 31/415 (7%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSL 309
G + LDA + + G+ I +A+ +Q +L H + + T + I L++ +
Sbjct: 48 DGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGT-EASITLAKXILDR 106
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
++G G+ A E +K+ ++Y G KKK I YHG L ++T +
Sbjct: 107 APKNXSKVYFGLGGSDANETNVKLIWYYNNILGRPEKKKIISRWRGYHGSGLVTGSLTGL 166
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANE--IARCAIFDLEILLKK-NHNKXXXXX 426
+ F + + + + P N E +A C + +LE L+++ +
Sbjct: 167 ELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHC-VAELEALIEREGADTIAAFI 225
Query: 427 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP++ GG++ + Y + ++ + N ++I L+ADE+ G GR G F +H + PD
Sbjct: 226 GEPILGT-GGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXFGSDHYGLEPDI 284
Query: 487 LCLS-KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFL-HSHSYSGNPLACCAALATLEI 544
+ ++ KG+T Y PLS + +D + H +YS +P+ A +A L++
Sbjct: 285 ITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVANLKL 344
Query: 545 FNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
++ N++ + + +L H + + R +G++ A + ++D + S+ F
Sbjct: 345 LDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVE-FVKDRD-----SRTF 398
Query: 604 FVAALK------------NELLLR--PIGNTVYLMPPYILNKNEIQHMTSAIFQT 644
F AA K ++++ R P G+ + PP+ L + E + +
Sbjct: 399 FDAADKIGPQISAKLLEQDKIIARAXPQGDILGFAPPFCLTRAEADQVVEGTLRA 453
>pdb|1V9K|A Chain A, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
pdb|1V9K|B Chain B, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
Length = 228
Score = 102 bits (254), Expect = 9e-22, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 27/212 (12%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGIVHRLDKNS 87
I YED+ I++LNK +G VH G LS + + L + P FL +VHRLD+++
Sbjct: 4 IXYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFL------ELVHRLDRDT 56
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTV 146
SG+++VAK + L QL+ Q+ YLA+V G + + + A +++N + V
Sbjct: 57 SGVLLVAKKRSALRSLHEQLREKGXQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV 116
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
+ KP+ T + ER A +L+RC+ TGRTHQIRVH Q+ GH I D+
Sbjct: 117 RVSQEGKPSETRFKVEERYAFA-------TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDR 169
Query: 204 YG-KKYSKSLI-----FNRQALHAYKLGLIHP 229
YG +++ + L NR LHA L HP
Sbjct: 170 YGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 201
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 40/396 (10%)
Query: 252 SGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 310
G +YLD S VN G S+ + K Q+ KL H ++ + P ++L++KL + +
Sbjct: 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYS 99
Query: 311 QYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
F+ + G A+E ++K+ N G +K I +HG T G++++T
Sbjct: 100 PGNFQKKVFFSNSGTEAIEASIKVV----KNTG---RKYIIAFLGGFHGRTFGSISLTAS 152
Query: 370 QSF-KEIYTSLLNKTYIITTPDS-RN---INKGNSANEIARCAIFDLEILLKKN---HNK 421
++ + I + + P+ RN IN + +E+ I +E + N +
Sbjct: 153 KAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEE 212
Query: 422 XXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
EP +Q GG ++ + ++++ Y I L+ DE+ +G GRTGK FA E+
Sbjct: 213 VAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFN 271
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALAT 541
PD + L+K + GG +P+ + +HS+++ GN LAC
Sbjct: 272 TVPDVITLAKALGGGIMPIGATIFRKDLDFKPG--------MHSNTFGGNALACAIGSKV 323
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSK 601
++I ++L +++ K + L L + R G+ W + +
Sbjct: 324 IDIVK--DLLPHVNEIGKIFAEELQGLAD-----DVRGIGLAWGLEY------NEKKVRD 370
Query: 602 KFFVAALKNELLLRPIGNT-VYLMPPYILNKNEIQH 636
+ + K LLL P G + + ++PP ++++ E +
Sbjct: 371 RIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQ 406
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 86/403 (21%), Positives = 170/403 (42%), Gaps = 20/403 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLT 310
G++ +DA + + G+ I A+ Q L H + + T + I L++ +
Sbjct: 50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGT-EASITLAKXIIDRA 108
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
++G G+ A E +K+ ++Y G KKK I YHG + ++T +
Sbjct: 109 PKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVXTGSLTGLD 168
Query: 371 SFKEIYTSLLNKTYIITTPDS---RNINKGNSANEIAR-CAIFDLEILLKKNHNKXXXXX 426
F + L + ++ T R ++ S + ++ CA E +L +
Sbjct: 169 LFHNAFD--LPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGPETIAAFI 226
Query: 427 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP++ GG++ + Y + ++ + Y++ L+ADE+ G GR G F +H I PD
Sbjct: 227 GEPILGT-GGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDHYGIKPDL 285
Query: 487 LCLS-KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFL-HSHSYSGNPLACCAALATLEI 544
+ ++ KG+T Y PLS V+ D L H +YS +P+ A +A LE+
Sbjct: 286 ITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLEL 345
Query: 545 FNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQI-----ET 598
++ +++ + L + H + R G + A + + + +++ +
Sbjct: 346 IDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKDDRVFFDASQK 405
Query: 599 FSKKFFVAALKNELLLR--PIGNTVYLMPPYILNKNEIQHMTS 639
+ A + ++ R P G+ + PP L + + + S
Sbjct: 406 IGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVVS 448
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 171/408 (41%), Gaps = 29/408 (7%)
Query: 244 DISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS 303
D ++ G ++D + V G S+ + A+ +Q H ++ ++++
Sbjct: 54 DGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVA 113
Query: 304 EKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 361
E L++LT + + S GA AVE A+K++ + + + N+YHG T
Sbjct: 114 ELLNALTPGDHDKRTALFNS-GAEAVENAIKVA------RLATGRPAVVAFDNAYHGRTN 166
Query: 362 GALAVT-NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 420
+A+T +K + + Y + G + E AR AI +E +
Sbjct: 167 LTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI--GAQ 224
Query: 421 KXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
EP +Q GG I+ +L + + + IADE+ G RTG +FA EH
Sbjct: 225 SLAAIIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHE 283
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALA 540
I PD + ++ GI GG +PLS V +Y GNP+ C AA+A
Sbjct: 284 GIVPDIVTMAXGIAGG-MPLSAV------TGRAELMDAVYAGGLGGTYGGNPVTCAAAVA 336
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIE-- 597
L + + ++ R +T L++L II R +G + A +++ P +E
Sbjct: 337 ALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV--KPGTLEPD 394
Query: 598 -TFSKKFFVAALKNELLL---RPIGNTVYLMPPYILNKNEIQHMTSAI 641
+K AL +L+ GN + L+PP ++ + + +A+
Sbjct: 395 AALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITAL 442
>pdb|2I82|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
Sequence Readout Through Protein-induced Rna Structure
pdb|2I82|B Chain B, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
Sequence Readout Through Protein-induced Rna Structure
pdb|2I82|C Chain C, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
Sequence Readout Through Protein-induced Rna Structure
pdb|2I82|D Chain D, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect
Sequence Readout Through Protein-induced Rna Structure
Length = 217
Score = 92.4 bits (228), Expect = 1e-18, Method: Composition-based stats.
Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 13/203 (6%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLI-NVPRAGIVHRLDKNS 87
L I+Y+D+ I ++NK +GL+ P G L ++ + + + P+A VHRLD +
Sbjct: 12 LVILYQDDHIXVVNKPSGLLSVP------GRLEEHKDSVXTRIQRDYPQAESVHRLDXAT 65
Query: 88 SGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRIKMTV 146
SG++VVA + + L Q + +++Y+A VWG P G+++ ++ + NR K V
Sbjct: 66 SGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV 125
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA T YE + N + L TGR+HQ+RVH LGH I+GD Y
Sbjct: 126 CYE-TGKPAQTEYEVVEYAADNTARVVL---KPITGRSHQLRVHXLALGHPILGDRFYAS 181
Query: 207 KYSKSLIFNRQALHAYKLGLIHP 229
+++ R LHA L + HP
Sbjct: 182 PEARAXA-PRLLLHAEXLTITHP 203
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 174/419 (41%), Gaps = 38/419 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
++LI +G+ +D +W G+ + I A+ + + ++ P + L+E+
Sbjct: 35 ARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAER 94
Query: 306 L-SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L +S ++G G+ A E A + G I +YHG T+G++
Sbjct: 95 LLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV------IAFAGAYHGCTVGSM 148
Query: 365 AVT--NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL--EILLKKNHN 420
A + ++Q+ L+ Y RN G+ AI L E L
Sbjct: 149 AFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGD--------AILTLLTEKLAAVPAG 200
Query: 421 KXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
EP +Q GG+I+ +L+ +IC + I ++ DE+ VG R+G+ EH
Sbjct: 201 SIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHE 259
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALA 540
PD L L KG+ GG +++ + LH GNP++ A LA
Sbjct: 260 GFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQT---LH-----GNPISAAAGLA 311
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE----DPEQ 595
LE ++D++ + + + L+ L HP I + R +G+ +++ + +P +
Sbjct: 312 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPAR 371
Query: 596 IETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
ET K A + L++ + GN + PP + + +I + + F+EL V
Sbjct: 372 AET--AKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 428
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 174/419 (41%), Gaps = 38/419 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
++LI +G+ +D +W G+ + I A+ + + ++ P + L+E+
Sbjct: 48 ARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAER 107
Query: 306 L-SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L +S ++G G+ A E A + G I +YHG T+G++
Sbjct: 108 LLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV------IAFAGAYHGCTVGSM 161
Query: 365 AVT--NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL--EILLKKNHN 420
A + ++Q+ L+ Y RN G+ AI L E L
Sbjct: 162 AFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGD--------AILTLLTEKLAAVPAG 213
Query: 421 KXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
EP +Q GG+I+ +L+ +IC + I ++ DE+ VG R+G+ EH
Sbjct: 214 SIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHE 272
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALA 540
PD L L KG+ GG +++ + LH GNP++ A LA
Sbjct: 273 GFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQT---LH-----GNPISAAAGLA 324
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE----DPEQ 595
LE ++D++ + + + L+ L HP I + R +G+ +++ + +P +
Sbjct: 325 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPAR 384
Query: 596 IETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
ET K A + L++ + GN + PP + + +I + + F+EL V
Sbjct: 385 AET--AKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 441
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 19/257 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G ++D S V G S+ + A++ H ++ + ++E+L+ LT
Sbjct: 63 GNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPG 122
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
+ + S GA AVE A+K++ + + + ++YHG T +A+T
Sbjct: 123 DHAKRTVLFNS-GAEAVENAVKVA------RLATGRDAVVAFDHAYHGRTNLTMALTAKA 175
Query: 370 QSFKEIYTSLLNKTYIITTPDS---RNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 426
+K + + Y + P S R N + E A+ AI +E + ++
Sbjct: 176 MPYKTNFGPFAPEVYRM--PMSYPFREENPEITGAEAAKRAITMIEKQI--GGDQVAAII 231
Query: 427 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP +Q GG I+ +L + E I IADE+ G RTG++FA +H + PD
Sbjct: 232 IEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDI 290
Query: 487 LCLSKGITGGYLPLSLV 503
+ ++KGI GG LPLS +
Sbjct: 291 ITMAKGIAGG-LPLSAI 306
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 167/416 (40%), Gaps = 52/416 (12%)
Query: 252 SGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 304
+G+RYLD + + G + + ++ LNK + S++ + + E
Sbjct: 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN---SDVYSVAMARFVE 108
Query: 305 KLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQN 354
+ L L H F+ GA AVE ALK +F + K N+ + + L+
Sbjct: 109 TFARVLGDPALPHLFFVEGGALAVENALKAAFDW---KSRHNQAHGIDPALGTQVLHLRG 165
Query: 355 SYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409
++HG + L++TN + F + ++ Y+ D + + A F
Sbjct: 166 AFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAF 225
Query: 410 DLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469
+ + H+ EP +Q AGG + + +RE+C+ ++ LI DE+ GCG
Sbjct: 226 E-----TRPHD-IACFVAEP-IQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYS 529
TG +A + ++ PD + K + VM L+S ++
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNS-TWG 332
Query: 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKII-NFRQKGMIWAFD 587
GN A LE+ + + +R Q K + L L P ++ + R +G++ AF
Sbjct: 333 GNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFS 392
Query: 588 VIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
+ T + + L + +++ P G +TV PP ++ EI +A+
Sbjct: 393 LPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAV 441
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/416 (21%), Positives = 166/416 (39%), Gaps = 52/416 (12%)
Query: 252 SGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 304
+G+RYLD + + G + + ++ LNK + S++ + + E
Sbjct: 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN---SDVYSVAMARFVE 108
Query: 305 KLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQN 354
+ L L H F+ GA AVE ALK +F + K N+ + + L+
Sbjct: 109 TFARVLGDPALPHLFFVEGGALAVENALKAAFDW---KSRHNQAHGIDPALGTQVLHLRG 165
Query: 355 SYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409
++HG + L++TN + F + ++ Y+ D + + A F
Sbjct: 166 AFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAF 225
Query: 410 DLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469
+ + H+ EP +Q GG + + +RE+C+ ++ LI DE+ GCG
Sbjct: 226 E-----TRPHD-IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYS 529
TG +A + ++ PD + K + VM L+S S+
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNS-SWG 332
Query: 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKII-NFRQKGMIWAFD 587
GN A LE+ + + +R Q K + L L P ++ + R +G++ AF
Sbjct: 333 GNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFS 392
Query: 588 VIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
+ T + + L + +++ P G +TV PP ++ EI +A+
Sbjct: 393 LPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAV 441
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 89/416 (21%), Positives = 166/416 (39%), Gaps = 52/416 (12%)
Query: 252 SGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 304
+G+RYLD + + G + + ++ LNK + S++ + + E
Sbjct: 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN---SDVYSVAMARFVE 108
Query: 305 KLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQN 354
+ L L H F+ GA AVE ALK +F + K N+ + + L+
Sbjct: 109 TFARVLGDPALPHLFFVEGGALAVENALKAAFDW---KSRHNQAHGIDPALGTQVLHLRG 165
Query: 355 SYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409
++HG + L++TN + F + ++ Y+ D + + A F
Sbjct: 166 AFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAF 225
Query: 410 DLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469
+ + H+ EP +Q GG + + +RE+C+ ++ LI DE+ GCG
Sbjct: 226 E-----TRPHD-IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYS 529
TG +A + ++ PD + K + VM L+S ++
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLNS-TWG 332
Query: 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKII-NFRQKGMIWAFD 587
GN A LE+ + + +R Q K + L L P ++ + R +G++ AF
Sbjct: 333 GNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFS 392
Query: 588 VIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
+ T + + L + +++ P G +TV PP ++ EI +A+
Sbjct: 393 LPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAV 441
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/416 (21%), Positives = 165/416 (39%), Gaps = 52/416 (12%)
Query: 252 SGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 304
+G+RYLD + + G + + ++ LNK + S++ + + E
Sbjct: 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN---SDVYSVAMARFVE 108
Query: 305 KLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQN 354
+ L L H F+ GA AVE ALK +F + K N+ + + L+
Sbjct: 109 TFARVLGDPALPHLFFVEGGALAVENALKAAFDW---KSRHNQAHGIDPALGTQVLHLRG 165
Query: 355 SYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409
++HG + L++TN + F + ++ Y+ D + + A F
Sbjct: 166 AFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAF 225
Query: 410 DLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469
+ + H+ EP +Q GG + + +RE+C+ ++ LI DE+ GCG
Sbjct: 226 E-----TRPHD-IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYS 529
TG +A + ++ PD + K + VM L S ++
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADNVFAVPSRLAS-TWG 332
Query: 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKII-NFRQKGMIWAFD 587
GN A LE+ + + +R Q K + L L P ++ + R +G++ AF
Sbjct: 333 GNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFS 392
Query: 588 VIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
+ T + + L + +++ P G +TV PP ++ EI +A+
Sbjct: 393 LPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAV 441
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 52/329 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK---------LEHVMLSNLTHK-PVIKL 302
G RY+D + +W + GH++ + +ALK + K LE+V+ + P I++
Sbjct: 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEM 110
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++S G A L++ + + + K I + YHG
Sbjct: 111 VRFVNS--------------GTEACMAVLRLM------RAYTGRDKIIKFEGCYHGHADM 150
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI---LLKKNH 419
L +++ + T + P S + K +AN + DLE L +N
Sbjct: 151 FL----VKAGSGVAT--------LGLPSSPGVPKKTTANTLT-TPYNDLEAVKALFAENP 197
Query: 420 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ EP+V +G I+ D+ +L+ +REI ++ L+ DE+ G R E
Sbjct: 198 GEIAGVILEPIVGNSG-FIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 539
+ PD L K I GG LP V + + SGNPLA A +
Sbjct: 256 FGVTPDLTTLGK-IIGGGLP---VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSL 568
TLE+ + + + Q K+++ L ++
Sbjct: 312 KTLELLRQPGTYEYLDQITKRLSDGLLAI 340
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 52/329 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK---------LEHVMLSNLTHK-PVIKL 302
G RY+D + +W + GH++ + +ALK + K LE+V+ + P I++
Sbjct: 56 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEM 115
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++S G A L++ + + + K I + YHG
Sbjct: 116 VRFVNS--------------GTEACMAVLRLM------RAYTGRDKIIKFEGCYHGHADM 155
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI---LLKKNH 419
L +++ + T + P S + K +AN + DLE L +N
Sbjct: 156 FL----VKAGSGVAT--------LGLPSSPGVPKKTTANTLT-TPYNDLEAVKALFAENP 202
Query: 420 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ EP+V +G I+ D+ +L+ +REI ++ L+ DE+ G R E
Sbjct: 203 GEIAGVILEPIVGNSG-FIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK 260
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 539
+ PD L K I GG LP V + + SGNPLA A +
Sbjct: 261 FGVTPDLTTLGK-IIGGGLP---VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 316
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSL 568
TLE+ + + + Q K+++ L ++
Sbjct: 317 KTLELLRQPGTYEYLDQITKRLSDGLLAI 345
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 52/329 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK---------LEHVMLSNLTHK-PVIKL 302
G RY+D + +W + GH++ + +ALK + K LE+V+ + P I++
Sbjct: 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEM 110
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++S G A L++ + + + K I + YHG
Sbjct: 111 VRFVNS--------------GTEACMAVLRIM------RAYTGRDKIIKFEGCYHGHADM 150
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI---LLKKNH 419
L +++ + T + P S + K +AN + DLE L +N
Sbjct: 151 FL----VKAGSGVAT--------LGLPSSPGVPKKTTANTLT-TPYNDLEAVKALFAENP 197
Query: 420 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ EP+V +G I+ D+ +L+ +REI ++ L+ DE+ G R E
Sbjct: 198 GEIAGVILEPIVGNSG-FIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK 255
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 539
+ PD L K I GG LP V + + SGNPLA A +
Sbjct: 256 FGVTPDLTTLGK-IIGGGLP---VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSL 568
TLE+ + + + Q K+++ L ++
Sbjct: 312 KTLELLRQPGTYEYLDQITKRLSDGLLAI 340
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 52/329 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK---------LEHVMLSNLTHK-PVIKL 302
G RY+D + +W + GH++ + +ALK + K LE+V+ + P I++
Sbjct: 56 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEM 115
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++S G A L++ + + + K I + YHG
Sbjct: 116 VRFVNS--------------GTEACMAVLRIM------RAYTGRDKIIKFEGCYHGHADM 155
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI---LLKKNH 419
L +++ + T + P S + K +AN + DLE L +N
Sbjct: 156 FL----VKAGSGVAT--------LGLPSSPGVPKKTTANTLT-TPYNDLEAVKALFAENP 202
Query: 420 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ EP+V +G I+ D+ +L+ +REI ++ L+ DE+ G R E
Sbjct: 203 GEIAGVILEPIVGNSG-FIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEK 260
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 539
+ PD L K I GG LP V + + SGNPLA A +
Sbjct: 261 FGVTPDLTTLGK-IIGGGLP---VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 316
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSL 568
TLE+ + + + Q K+++ L ++
Sbjct: 317 KTLELLRQPGTYEYLDQITKRLSDGLLAI 345
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 52/329 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK---------LEHVMLSNLTHK-PVIKL 302
G RY+D + +W + GH++ + +ALK + K LE+V+ + P I++
Sbjct: 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEM 110
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++S G A L++ + + + K I + YHG
Sbjct: 111 VRFVNS--------------GTEACMAVLRIM------RAYTGRDKIIKFEGCYHGHADM 150
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI---LLKKNH 419
L +++ + T + P S + K +AN + DLE L +N
Sbjct: 151 FL----VKAGSGVAT--------LGLPSSPGVPKKTTANTLT-TPYNDLEAVKALFAENP 197
Query: 420 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ EP+V +G I+ D+ +L+ +REI ++ L+ DE+ G R E
Sbjct: 198 GEIAGVILEPIVGNSG-FIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 539
+ PD L K I GG LP V + + SGNPLA A +
Sbjct: 256 FGVTPDLTTLGK-IIGGGLP---VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSL 568
TLE+ + + + Q K+++ L ++
Sbjct: 312 KTLELLRQPGTYEYLDQITKRLSDGLLAI 340
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 127/329 (38%), Gaps = 55/329 (16%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G RYLD + SW + GH++ K L LE + + L++K+ +
Sbjct: 51 GNRYLDYVMSWGPLILGHAHP---KVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPF 107
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG---------- 362
+ + + G A AL+++ +G+ + + + +YHG G
Sbjct: 108 -VDLVRFVNSGTEATMSALRLA------RGYTGRPYIVKFRGNYHGHADGLLVEAGSGAL 160
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKX 422
L V + E Y L T ++ D + + +LK+ +
Sbjct: 161 TLGVPSSAGVPEEYAKL---TLVLEYNDPEGLRE-----------------VLKRRGEEI 200
Query: 423 XXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
EP+V AG ++ + +LK + E Y + LIADE+ G R A E +
Sbjct: 201 AAIIFEPVVGNAGVLVPTED-FLKALHE-AKAYGVLLIADEVMTGF-RLAFGGATELLGL 257
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 542
PD + L K I GG LP + + + SGNPLA A LATL
Sbjct: 258 KPDLVTLGK-ILGGGLPAA---AYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATL 313
Query: 543 EIFNK--------DNILQRISQDMKKITK 563
E+ + +++ R+ +K++ K
Sbjct: 314 ELLEENPGYYAYLEDLGARLEAGLKEVLK 342
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 40/320 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSS 308
G +Y+D + SW + GH++ + AL L K +L N+ + VI +
Sbjct: 35 GNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKGTSFGAPCLLENILAEMVIAAVPSVEM 94
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ + + G A L++ + + ++K I + YHG L
Sbjct: 95 VR--------FVNSGTEACMAVLRLM------RAYTQREKVIKFEGCYHGHADMFL---- 136
Query: 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI---LLKKNHNKXXXX 425
+++ + T + PDS + K + DLE L ++ N
Sbjct: 137 VKAGSGVAT--------LGLPDSPGVPK-ATTAATLTAPYNDLEAVSRLFEQYPNDIAGV 187
Query: 426 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
EP+V AG I D+ +L+ +RE+ Y L+ DE+ G R A E + PD
Sbjct: 188 ILEPVVGNAG-FIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPD 245
Query: 486 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 545
L K + GG LP V + + SGNPLA A + TLEI
Sbjct: 246 LTTLGK-VIGGGLP---VGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEIL 301
Query: 546 NKDNILQRISQDMKKITKAL 565
++ + + + K+ + L
Sbjct: 302 SRPGSYEHLDRITGKLVQGL 321
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 129/326 (39%), Gaps = 37/326 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS-E 304
SK+ G Y+D + SW + GH+N + ++LK + KL +
Sbjct: 53 SKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVID 112
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
++ S+ ++ S G A AL+++ +G+ + K + + YHG L
Sbjct: 113 RVPSVEIVRM-----VSSGTEATMSALRLA------RGYTGRNKILKFEGCYHGHGDSLL 161
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE---ILLKKNHNK 421
I++ + T + PDS + +G + N I DLE + ++
Sbjct: 162 ----IKAGSGVAT--------LGLPDSPGVPEGIAKNTIT-VPYNDLESVKLAFQQFGED 208
Query: 422 XXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
EP+ G++ +L+ +R+I Y LI DE+ G R A +
Sbjct: 209 IAGVIVEPVAGNM-GVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFG 266
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALAT 541
+ PD CL K + GG LP V + + SGNPLA A L T
Sbjct: 267 VTPDLTCLGK-VIGGGLP---VGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLET 322
Query: 542 LEIFNKD---NILQRISQDMKKITKA 564
L+ D N +++ + + I+KA
Sbjct: 323 LKQLTPDSYKNFIKKGDRLEEGISKA 348
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/433 (21%), Positives = 163/433 (37%), Gaps = 63/433 (14%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP----VIKLS 303
L+ G R LD S G+S+ + K ++ N + L P V KL
Sbjct: 57 LVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLR 116
Query: 304 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK-----GFLNKKKFICLQN---- 354
E L S+ + + G+ + E A K F ++ +K F ++ C+ N
Sbjct: 117 ESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPG 176
Query: 355 -----------SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR----NINKGNS 399
++HG T+G LA T+ ++ +I + I P + K N
Sbjct: 177 CPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP-IAPFPRLKYPLEEFVKENQ 235
Query: 400 ANEIARC--AIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457
E ARC + DL + +K EP +Q GG + + +R+I +
Sbjct: 236 QEE-ARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKHGC 293
Query: 458 HLIADEIAVGCGRTGKFFACEHAEIW-----PDFLCLSKG-ITGGYLPLSLVMTTDXXXX 511
+ DE+ G G TGKF+A EH W D + SK +TGG+
Sbjct: 294 AFLVDEVQTGGGSTGKFWAHEH---WGLDDPADVMTFSKKMMTGGFF------------- 337
Query: 512 XXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-IT 570
+ +++ G+P + I ++++L + K + L L
Sbjct: 338 HKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQAR 397
Query: 571 HPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYIL 629
+P+ I+ R +G +FD P+ E+ K A ++L G+ P ++
Sbjct: 398 YPQFISRVRGRGTFCSFDT----PD--ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLV 451
Query: 630 NKNEIQHMTSAIF 642
++ H+ IF
Sbjct: 452 FRDHHAHLFLNIF 464
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 118/307 (38%), Gaps = 46/307 (14%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS-E 304
SK+ G Y+D + SW + GH+N + +ALK + + KL E
Sbjct: 45 SKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIE 104
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
++ S+ + + G A AL+++ +G+ + K + YHG L
Sbjct: 105 RVPSIEIVRXVNS-----GTEATXSALRLA------RGYTGRNKILKFIGCYHGHGDSLL 153
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL---LKKNHNK 421
I++ + T + PDS + +G + N I A DLE + ++ +
Sbjct: 154 ----IKAGSGVAT--------LGLPDSPGVPEGVAKNTIT-VAYNDLESVKYAFEQFGDD 200
Query: 422 XXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG------CGRTGKFF 475
EP V G++ +L+ +RE+ LI DE+ G CG+
Sbjct: 201 IACVIVEP-VAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQG---- 255
Query: 476 ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLAC 535
+ + PD CL K + GG LP V + + SGNPLA
Sbjct: 256 ---YYGVTPDLTCLGK-VIGGGLP---VGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAX 308
Query: 536 CAALATL 542
A TL
Sbjct: 309 AAGYETL 315
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 130/338 (38%), Gaps = 50/338 (14%)
Query: 244 DISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS 303
D + L GK Y+D + SW + GH++ I +A+ + +E + + +K +
Sbjct: 43 DGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAV---IEAVERGLSFGAPTEXEVKXA 99
Query: 304 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET--- 360
+ ++ L + G A A++++ +G+ + K I + YHG
Sbjct: 100 QLVTDLVP-TXDXVRXVNSGTEATXSAIRLA------RGYTGRDKIIKFEGCYHGHADCL 152
Query: 361 -----LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG--NSANEIARCAIFDLEI 413
GAL + S + T T T D ++ + E+A C I +
Sbjct: 153 LVKAGSGALTLGQPNS-PGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVA-CIIVEP-- 208
Query: 414 LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+ N N PL + +L +R +C+ + LI DE+ G R
Sbjct: 209 -VAGNXN-----CIPPLPE-----------FLPGLRALCDEFGALLIIDEVXTGF-RVAL 250
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPL 533
A ++ + PD CL K I GG P V + + SGNP+
Sbjct: 251 AGAQDYYHVIPDLTCLGK-IIGGGXP---VGAFGGRREVXNALAPTGPVYQAGTLSGNPI 306
Query: 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH 571
A A A L ++ + + +++ +T +L + + H
Sbjct: 307 AXAAGFACLTEISQVGVYETLTE----LTDSLATGLRH 340
>pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde
From Thermotoga Maritima
pdb|3IIX|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With Methionine And
5'deoxyadenosine
Length = 348
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 8/260 (3%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
A ++ RKY +E+ + ++ + C ++C YC + + ++ E ++ A+
Sbjct: 39 ADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYC--GLRRDNKNLKRYRMTPEEIVERAR 94
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
A GA + + D+ I +++ E+KK+G+ L+LG + K+ G
Sbjct: 95 LAVQFGAKTIVLQSGEDPYXMPDV--ISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAG 152
Query: 786 LDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 844
D Y +T+ P L+ + +ENRLN L ++ + L
Sbjct: 153 ADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 845 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904
+ + + V I + TPL D ++ +A+ RI +P S I +
Sbjct: 213 DLLFLKEHDF-DMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAM 271
Query: 905 KEMGETTQAFCFLAGANSIF 924
+ + GAN I
Sbjct: 272 GTIVPGGREITLRCGANVIM 291
>pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With S-Adenosyl-L-Methionine
Length = 348
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 8/260 (3%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
A ++ RKY +E+ + ++ + C ++C YC + + ++ E ++ A+
Sbjct: 39 ADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYC--GLRRDNKNLKRYRMTPEEIVERAR 94
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
A GA + + D+ I +++ E+KK+G+ L+LG + K+ G
Sbjct: 95 LAVQFGAKTIVLQSGEDPYXMPDV--ISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAG 152
Query: 786 LDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 844
D Y +T+ P L+ + +ENRLN L ++ + L
Sbjct: 153 ADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 845 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904
+ + + V I + TPL D ++ +A+ RI +P S I +
Sbjct: 213 DLLFLKEHDF-DMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAM 271
Query: 905 KEMGETTQAFCFLAGANSIF 924
+ + GAN I
Sbjct: 272 GTIVPGGREITLRCGANVIM 291
>pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde
From Thermotoga Maritima In Complex With Thiocyanate
Length = 348
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 8/260 (3%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
A ++ RKY +E+ + ++ + C ++C YC + + ++ E ++ A+
Sbjct: 39 ADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYC--GLRRDNKNLKRYRMTPEEIVERAR 94
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
A GA + + E D I +++ E+KK+G+ L+LG + K+ G
Sbjct: 95 LAVQFGAKTIVLQSG--EDPYYMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAG 152
Query: 786 LDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 844
D Y +T+ P L+ + +ENRLN L ++ + L
Sbjct: 153 ADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 845 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904
+ + + V I + TPL D ++ +A+ RI +P S I +
Sbjct: 213 DLLFLKEHDF-DMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAM 271
Query: 905 KEMGETTQAFCFLAGANSIF 924
+ + GAN I
Sbjct: 272 GTIVPGGREITLRCGANVIM 291
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/358 (18%), Positives = 144/358 (40%), Gaps = 38/358 (10%)
Query: 207 KYSKSLIFNRQALHAYKLGLIHPKNNLK-LKWRINLPDDISKLITF---SGKRYLDAISS 262
K++KS +++AL G+ P + K + + + K F G +Y+D +++
Sbjct: 4 KFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAXERGKGAYFWDVDGNKYIDYLAA 63
Query: 263 WWVNLFGHSNSYINKALKNQL-NKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321
+ + GH++ +I KA+ N + + + L K L E +L + + + +
Sbjct: 64 YGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKXLKEAXPALDKVR-----FVN 118
Query: 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN 381
G AV ++++ + + + K YHG + + + +
Sbjct: 119 SGTEAVXTTIRVA------RAYTGRTKIXKFAGCYHGHS------------DLVLVAAGS 160
Query: 382 KTYIITTPDSRNINKGNSANEIARCAIFDLEIL---LKKNHNKXXXXXXEPLVQCAGGMI 438
+ TPDS + + + A E+ ++E L L K ++ EP+V G++
Sbjct: 161 GPSTLGTPDSAGVPQ-SIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNF-GIV 218
Query: 439 MYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYL 498
+L+ V E+ + +I DE+ + R A + + PD L + GG L
Sbjct: 219 EPKPGFLEKVNELVHEAGALVIYDEV-ITAFRFXYGGAQDLLGVTPDLTALGX-VIGGGL 276
Query: 499 PLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQ 556
P+ + + +GNP + + +A LE+ ++ + +++ +
Sbjct: 277 PIG---AYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVLQQEGLYEKLDE 331
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 37/213 (17%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKL-SEKLSSLTQ 311
G RY D I+ + ++GHS I A+ + ++ NL + +L E+ + Q
Sbjct: 86 GHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFPQIEQ 145
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+ + + G A +AL + H F ++K + YHG LG A
Sbjct: 146 LR-----FTNSGTEANLMALTAALH------FTGRRKIVVFSGGYHGGVLGFGA------ 188
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 431
+ T P + N A + AR I +++ + EP+
Sbjct: 189 ----------RPSPTTVPFDFLVLPYNDA-QTARAQI-------ERHGPEIAVVLVEPM- 229
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 464
Q A G I +L+ +RE L+ DE+
Sbjct: 230 QGASGCIPGQPDFLQALRESATQVGALLVFDEV 262
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 127/335 (37%), Gaps = 41/335 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G YLD + GH + +N A+ L+ H + +H ++ +E++ +
Sbjct: 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALS---HGVQYAASHPLEVRWAERIVAAFPS 112
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
F GS G +AL+++ + F ++ + + YHG + + N
Sbjct: 113 IRKLRFTGS-GTETTLLALRVA------RAFTGRRMILRFEGHYHGWHDFSASGYNSHFD 165
Query: 373 KEIYTSLLNKTY---IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEP 429
+ +L +T ++ PD + AN + A F EP
Sbjct: 166 GQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAF----------------IAEP 209
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+ G + DS +L+ E+ Y I DE+ G R G ++ PD CL
Sbjct: 210 VGSHFGVTPVSDS-FLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCL 267
Query: 490 SKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K GG L D LH +++GNP+ AA+A ++ +D+
Sbjct: 268 AKASAGGLPGGILGGREDVMGVLSRGSDRKV--LHQGTFTGNPITAAAAIAAIDTILEDD 325
Query: 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIW 584
+ +I+ + +A+ L F +KG+ W
Sbjct: 326 VCAKINDLGQFAREAMNHL--------FARKGLNW 352
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 619 NTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVI 652
T+ ++PP +L ++QH+ I+ + N+ D+VI
Sbjct: 301 QTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI 334
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 70 FLINVPRAGI--VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
F V G+ V L N + ++V ++ K Y+HLV Q++M RK LA
Sbjct: 188 FSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLA 238
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 70 FLINVPRAGI--VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLA 118
F V G+ V L N + ++V ++ K Y+HLV Q++M RK LA
Sbjct: 205 FSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLA 255
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 288 HVMLSNLTHKPVIKLSEKLSSL----TQYKLGHCFYGSDGASAVEVALKMSFHYWYN 340
H LS + + +KL EK + + +LG C+ D A+AV++ +++ YWYN
Sbjct: 111 HDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELK--YWYN 165
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 288 HVMLSNLTHKPVIKLSEKLSSL----TQYKLGHCFYGSDGASAVEVALKMSFHYWYN 340
H LS + + +KL EK + + +LG C+ D A+AV++ +++ YWYN
Sbjct: 103 HDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELK--YWYN 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,712,571
Number of Sequences: 62578
Number of extensions: 1004659
Number of successful extensions: 2435
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 107
length of query: 965
length of database: 14,973,337
effective HSP length: 108
effective length of query: 857
effective length of database: 8,214,913
effective search space: 7040180441
effective search space used: 7040180441
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)