Query psy8199
Match_columns 965
No_of_seqs 631 out of 5414
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:09:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e3q_A Pyruvate transaminase; 100.0 3.9E-73 1.3E-77 648.9 38.4 422 223-648 32-468 (473)
2 4atq_A 4-aminobutyrate transam 100.0 8E-68 2.7E-72 603.1 40.0 389 241-646 46-453 (456)
3 3i5t_A Aminotransferase; pyrid 100.0 1.6E-61 5.6E-66 562.3 43.3 423 224-650 20-456 (476)
4 4ao9_A Beta-phenylalanine amin 100.0 2E-62 7E-67 555.0 32.5 384 216-647 49-445 (454)
5 3hmu_A Aminotransferase, class 100.0 1.1E-61 3.7E-66 562.7 36.2 419 223-649 20-453 (472)
6 4a0g_A Adenosylmethionine-8-am 100.0 5.6E-62 1.9E-66 592.9 25.5 422 223-646 339-826 (831)
7 3tfu_A Adenosylmethionine-8-am 100.0 7.6E-59 2.6E-63 537.0 37.7 404 223-646 38-451 (457)
8 4a6r_A Omega transaminase; tra 100.0 3.4E-58 1.2E-62 534.1 37.6 421 222-648 14-449 (459)
9 3gju_A Putative aminotransfera 100.0 1.9E-57 6.6E-62 527.9 40.2 422 223-646 14-454 (460)
10 3dod_A Adenosylmethionine-8-am 100.0 3.1E-57 1.1E-61 524.6 39.1 419 223-646 10-441 (448)
11 3n5m_A Adenosylmethionine-8-am 100.0 1.9E-55 6.4E-60 510.8 40.7 395 246-645 41-449 (452)
12 4ffc_A 4-aminobutyrate aminotr 100.0 1.5E-54 5.3E-59 501.5 39.4 385 246-646 56-447 (453)
13 3oks_A 4-aminobutyrate transam 100.0 2.2E-54 7.6E-59 500.3 37.8 386 246-645 53-448 (451)
14 3i4j_A Aminotransferase, class 100.0 4E-52 1.4E-56 479.8 39.7 387 246-646 21-426 (430)
15 3a8u_X Omega-amino acid--pyruv 100.0 1E-49 3.6E-54 462.2 38.1 418 223-645 16-444 (449)
16 1z7d_A Ornithine aminotransfer 100.0 1.8E-49 6.3E-54 456.5 36.1 366 246-645 57-426 (433)
17 2oat_A Ornithine aminotransfer 100.0 2.6E-49 8.8E-54 455.9 36.5 366 246-645 68-436 (439)
18 3l44_A Glutamate-1-semialdehyd 100.0 5.5E-49 1.9E-53 454.2 35.8 367 246-647 47-429 (434)
19 1ohv_A 4-aminobutyrate aminotr 100.0 1.8E-49 6.3E-54 460.5 31.6 378 246-645 55-468 (472)
20 2yky_A Beta-transaminase; tran 100.0 7.7E-53 2.6E-57 480.9 0.0 362 246-649 92-461 (465)
21 3nx3_A Acoat, acetylornithine 100.0 2.9E-48 9.9E-53 442.5 36.2 362 246-645 28-392 (395)
22 3k28_A Glutamate-1-semialdehyd 100.0 8.9E-49 3.1E-53 451.4 31.7 368 241-645 35-424 (429)
23 3dxv_A Alpha-amino-epsilon-cap 100.0 3.3E-48 1.1E-52 448.3 35.8 379 246-646 35-423 (439)
24 1s0a_A Adenosylmethionine-8-am 100.0 2.4E-47 8.3E-52 439.7 42.0 403 224-645 11-421 (429)
25 2cjg_A L-lysine-epsilon aminot 100.0 2.9E-48 1E-52 448.7 33.4 382 246-645 45-445 (449)
26 4e77_A Glutamate-1-semialdehyd 100.0 5.4E-48 1.8E-52 445.1 35.3 370 241-645 35-426 (429)
27 1zod_A DGD, 2,2-dialkylglycine 100.0 1.7E-47 5.9E-52 441.6 36.7 385 246-645 35-429 (433)
28 2pb2_A Acetylornithine/succiny 100.0 1.1E-47 3.6E-52 440.5 33.6 365 246-645 49-415 (420)
29 3fq8_A Glutamate-1-semialdehyd 100.0 2E-47 6.8E-52 440.2 35.1 369 241-645 34-424 (427)
30 2eo5_A 419AA long hypothetical 100.0 1.8E-45 6E-50 422.3 38.0 370 246-645 34-415 (419)
31 2epj_A Glutamate-1-semialdehyd 100.0 2.6E-45 8.9E-50 423.3 33.2 365 246-646 48-429 (434)
32 2e7u_A Glutamate-1-semialdehyd 100.0 7.1E-45 2.4E-49 418.3 33.4 362 246-644 44-423 (424)
33 3ruy_A Ornithine aminotransfer 100.0 2.3E-43 8E-48 401.6 35.3 360 246-644 28-390 (392)
34 2cy8_A D-phgat, D-phenylglycin 100.0 9.1E-44 3.1E-48 412.6 32.5 366 246-647 49-434 (453)
35 4adb_A Succinylornithine trans 100.0 1E-42 3.5E-47 398.4 35.7 366 246-646 31-398 (406)
36 1sff_A 4-aminobutyrate aminotr 100.0 5.5E-41 1.9E-45 386.6 37.1 378 246-645 33-421 (426)
37 1v9f_A Ribosomal large subunit 100.0 5.8E-42 2E-46 372.9 21.5 228 2-237 58-296 (325)
38 2i82_A Ribosomal large subunit 100.0 7E-42 2.4E-46 349.6 20.6 202 29-244 12-216 (217)
39 2ord_A Acoat, acetylornithine 100.0 2.9E-40 1E-44 376.7 32.4 361 246-645 32-394 (397)
40 3t7v_A Methylornithine synthas 100.0 1.1E-40 3.7E-45 370.9 27.4 318 630-956 6-343 (350)
41 1r30_A Biotin synthase; SAM ra 100.0 8.1E-40 2.8E-44 366.0 34.0 311 646-956 30-340 (369)
42 1v9k_A Ribosomal large subunit 100.0 1.5E-40 5.2E-45 342.5 19.8 198 30-237 3-209 (228)
43 1vef_A Acetylornithine/acetyl- 100.0 1.5E-38 5.3E-43 362.2 33.8 355 246-644 37-393 (395)
44 3iix_A Biotin synthetase, puta 100.0 6.5E-37 2.2E-41 341.3 34.1 313 634-954 3-337 (348)
45 2eh6_A Acoat, acetylornithine 100.0 9.6E-37 3.3E-41 344.8 34.1 354 246-644 20-374 (375)
46 2oml_A Ribosomal large subunit 100.0 6.2E-35 2.1E-39 291.6 3.0 166 28-207 3-172 (189)
47 2olw_A Ribosomal large subunit 100.0 1.2E-33 4E-38 287.4 6.7 168 26-207 29-200 (217)
48 3l8a_A METC, putative aminotra 100.0 1.1E-31 3.9E-36 307.9 22.8 344 246-645 51-419 (421)
49 2w8t_A SPT, serine palmitoyltr 100.0 1.6E-29 5.4E-34 290.4 30.2 333 246-645 57-412 (427)
50 1ksk_A Ribosomal small subunit 100.0 4.9E-32 1.7E-36 281.1 7.7 176 2-205 30-207 (234)
51 1vio_A Ribosomal small subunit 100.0 1.9E-31 6.4E-36 277.8 6.7 177 2-206 29-209 (243)
52 3tqx_A 2-amino-3-ketobutyrate 100.0 4.9E-28 1.7E-32 275.8 26.1 334 246-645 36-393 (399)
53 1fc4_A 2-amino-3-ketobutyrate 100.0 7.5E-28 2.6E-32 274.4 27.3 335 246-645 37-394 (401)
54 3kki_A CAI-1 autoinducer synth 100.0 8.2E-28 2.8E-32 274.8 24.2 331 246-645 51-401 (409)
55 3fdb_A Beta C-S lyase, putativ 100.0 2.8E-28 9.6E-33 275.5 19.8 339 246-645 15-373 (377)
56 3dzz_A Putative pyridoxal 5'-p 100.0 1E-27 3.4E-32 272.4 24.2 345 246-645 19-386 (391)
57 1yiz_A Kynurenine aminotransfe 99.9 1.7E-26 5.7E-31 265.8 28.1 346 254-645 37-426 (429)
58 1bs0_A Protein (8-amino-7-oxon 99.9 3.3E-26 1.1E-30 259.2 28.8 331 246-643 32-382 (384)
59 1d2f_A MALY protein; aminotran 99.9 1.7E-26 5.8E-31 262.2 26.1 342 246-645 15-386 (390)
60 3kax_A Aminotransferase, class 99.9 8.9E-27 3.1E-31 263.8 23.1 343 246-644 15-381 (383)
61 4dq6_A Putative pyridoxal phos 99.9 5.5E-27 1.9E-31 266.3 21.3 343 246-644 19-389 (391)
62 3a2b_A Serine palmitoyltransfe 99.9 4.6E-26 1.6E-30 259.3 28.8 333 246-645 36-389 (398)
63 2gml_A Ribosomal large subunit 99.9 2.7E-28 9.4E-33 246.5 7.3 139 35-204 13-153 (237)
64 3jtx_A Aminotransferase; NP_28 99.9 6.7E-26 2.3E-30 257.8 26.5 341 246-644 22-394 (396)
65 3b46_A Aminotransferase BNA3; 99.9 5.9E-26 2E-30 262.2 26.2 348 252-643 55-442 (447)
66 1c7n_A Cystalysin; transferase 99.9 1.9E-26 6.4E-31 262.7 21.4 345 246-645 16-390 (399)
67 3dh3_A Ribosomal large subunit 99.9 4.8E-28 1.6E-32 255.0 7.4 170 2-205 33-207 (290)
68 2x5d_A Probable aminotransfera 99.9 9.3E-26 3.2E-30 258.0 24.6 341 250-645 33-395 (412)
69 1vp4_A Aminotransferase, putat 99.9 3.5E-26 1.2E-30 262.5 21.0 345 252-647 41-417 (425)
70 2zc0_A Alanine glyoxylate tran 99.9 1.1E-25 3.8E-30 257.0 25.0 341 252-645 32-401 (407)
71 3ftb_A Histidinol-phosphate am 99.9 2.2E-25 7.6E-30 250.1 26.8 320 251-643 23-356 (361)
72 3ly1_A Putative histidinol-pho 99.9 9.8E-26 3.3E-30 252.3 23.8 331 246-645 8-349 (354)
73 3euc_A Histidinol-phosphate am 99.9 2.2E-25 7.5E-30 250.8 26.6 326 253-645 29-365 (367)
74 2o1b_A Aminotransferase, class 99.9 9.3E-26 3.2E-30 257.1 23.0 338 251-647 44-402 (404)
75 1lc5_A COBD, L-threonine-O-3-p 99.9 1.4E-25 4.7E-30 252.1 23.4 326 249-646 19-358 (364)
76 1j32_A Aspartate aminotransfer 99.9 1.5E-25 5.1E-30 254.2 23.7 339 251-645 27-384 (388)
77 2dou_A Probable N-succinyldiam 99.9 1E-25 3.5E-30 254.4 22.2 330 251-644 22-374 (376)
78 3ffh_A Histidinol-phosphate am 99.9 3E-25 1E-29 249.2 25.9 322 252-644 30-362 (363)
79 3aow_A Putative uncharacterize 99.9 2.3E-25 7.9E-30 256.8 25.6 341 253-645 75-442 (448)
80 3ezs_A Aminotransferase ASPB; 99.9 2.3E-25 7.9E-30 251.5 25.1 332 250-646 20-373 (376)
81 2zyj_A Alpha-aminodipate amino 99.9 6.7E-26 2.3E-30 257.9 19.7 338 253-646 31-391 (397)
82 3nra_A Aspartate aminotransfer 99.9 6.3E-26 2.2E-30 259.1 19.2 335 255-645 40-402 (407)
83 2z61_A Probable aspartate amin 99.9 1.8E-25 6.3E-30 251.7 22.6 322 252-645 27-368 (370)
84 3dyd_A Tyrosine aminotransfera 99.9 2.1E-25 7.1E-30 256.1 23.4 345 249-645 49-421 (427)
85 1o4s_A Aspartate aminotransfer 99.9 3.7E-25 1.3E-29 250.9 23.8 332 252-645 39-386 (389)
86 3h14_A Aminotransferase, class 99.9 1.7E-25 5.8E-30 254.0 20.9 335 250-645 27-379 (391)
87 3piu_A 1-aminocyclopropane-1-c 99.9 5.2E-25 1.8E-29 253.7 24.9 351 248-646 30-430 (435)
88 3b1d_A Betac-S lyase; HET: PLP 99.9 5.8E-28 2E-32 274.4 0.0 345 246-645 21-390 (392)
89 1u08_A Hypothetical aminotrans 99.9 1.8E-24 6.1E-29 245.1 28.0 333 254-643 30-385 (386)
90 1v2d_A Glutamine aminotransfer 99.9 4.2E-25 1.4E-29 249.8 22.1 325 254-647 25-370 (381)
91 3cq5_A Histidinol-phosphate am 99.9 1.5E-24 5E-29 244.2 26.3 320 257-644 33-364 (369)
92 1gd9_A Aspartate aminotransfer 99.9 7.5E-25 2.6E-29 248.5 23.6 335 254-645 26-383 (389)
93 3g0t_A Putative aminotransfera 99.9 7.1E-25 2.4E-29 252.9 23.6 342 246-644 36-433 (437)
94 1iay_A ACC synthase 2, 1-amino 99.9 1.6E-24 5.6E-29 249.0 25.7 340 255-645 37-424 (428)
95 3ele_A Amino transferase; RER0 99.9 1.6E-24 5.6E-29 246.5 25.3 333 252-645 33-393 (398)
96 1xi9_A Putative transaminase; 99.9 1.3E-24 4.3E-29 248.1 23.5 340 251-645 35-400 (406)
97 2o0r_A RV0858C (N-succinyldiam 99.9 1.3E-24 4.5E-29 248.4 23.5 336 255-647 26-395 (411)
98 2bwn_A 5-aminolevulinate synth 99.9 7.8E-24 2.7E-28 241.2 29.3 331 252-646 44-398 (401)
99 3hdo_A Histidinol-phosphate am 99.9 1.6E-24 5.5E-29 243.0 21.1 324 251-645 23-352 (360)
100 2gb3_A Aspartate aminotransfer 99.9 1.8E-24 6.1E-29 247.1 21.1 333 251-646 40-400 (409)
101 1fg7_A Histidinol phosphate am 99.9 2.1E-24 7E-29 241.5 20.8 315 253-644 28-354 (356)
102 1elu_A L-cysteine/L-cystine C- 99.9 8.5E-24 2.9E-28 239.8 25.9 337 252-644 15-388 (390)
103 3fvs_A Kynurenine--oxoglutarat 99.9 1.8E-23 6.3E-28 239.8 27.8 347 253-645 27-419 (422)
104 2ay1_A Aroat, aromatic amino a 99.9 9.5E-25 3.2E-29 248.1 16.6 343 250-643 22-391 (394)
105 2x5f_A Aspartate_tyrosine_phen 99.9 1.8E-24 6.1E-29 248.8 18.5 344 254-645 47-426 (430)
106 2q7w_A Aspartate aminotransfer 99.9 1.1E-24 3.9E-29 247.6 16.3 345 246-644 18-395 (396)
107 1ajs_A Aspartate aminotransfer 99.9 2.6E-24 8.9E-29 246.1 19.1 343 252-645 28-408 (412)
108 3op7_A Aminotransferase class 99.9 3.3E-24 1.1E-28 242.0 19.2 296 297-646 63-369 (375)
109 3get_A Histidinol-phosphate am 99.9 8.2E-24 2.8E-28 237.7 22.3 322 253-644 29-363 (365)
110 3qgu_A LL-diaminopimelate amin 99.9 4.9E-24 1.7E-28 246.7 21.0 343 249-646 64-438 (449)
111 3e2y_A Kynurenine-oxoglutarate 99.9 4.1E-23 1.4E-27 236.0 27.7 348 253-643 22-408 (410)
112 1kmj_A Selenocysteine lyase; p 99.9 3.1E-23 1.1E-27 236.5 25.1 327 269-645 33-402 (406)
113 3rq1_A Aminotransferase class 99.9 1.6E-23 5.6E-28 239.9 22.8 341 253-645 37-412 (418)
114 3f9t_A TDC, L-tyrosine decarbo 99.9 5.8E-23 2E-27 233.4 25.6 329 271-645 42-395 (397)
115 3t18_A Aminotransferase class 99.9 3E-23 1E-27 237.3 22.5 330 253-632 36-398 (413)
116 3fkd_A L-threonine-O-3-phospha 99.9 8E-23 2.7E-27 228.2 25.3 319 246-646 7-340 (350)
117 1bw0_A TAT, protein (tyrosine 99.9 4E-23 1.4E-27 236.5 22.7 348 253-645 32-410 (416)
118 1t3i_A Probable cysteine desul 99.9 9.3E-23 3.2E-27 233.7 23.3 341 251-645 24-410 (420)
119 3ke3_A Putative serine-pyruvat 99.9 5.1E-23 1.7E-27 232.2 20.1 339 247-646 5-374 (379)
120 1vjo_A Alanine--glyoxylate ami 99.9 7.1E-23 2.4E-27 232.6 21.4 329 252-644 32-391 (393)
121 2dr1_A PH1308 protein, 386AA l 99.9 1.9E-22 6.3E-27 228.4 24.2 331 254-646 20-377 (386)
122 3asa_A LL-diaminopimelate amin 99.9 1E-22 3.5E-27 231.7 21.2 332 252-647 31-392 (400)
123 4f4e_A Aromatic-amino-acid ami 99.9 7.2E-23 2.5E-27 234.5 19.9 348 248-644 43-418 (420)
124 1b5p_A Protein (aspartate amin 99.9 7.8E-22 2.7E-26 223.2 27.9 337 252-645 29-382 (385)
125 1svv_A Threonine aldolase; str 99.9 2E-22 6.8E-27 225.7 22.3 327 256-646 15-356 (359)
126 3ei9_A LL-diaminopimelate amin 99.9 2.6E-22 8.9E-27 230.9 23.6 344 248-644 50-424 (432)
127 3lvm_A Cysteine desulfurase; s 99.9 2.3E-22 8E-27 230.7 22.9 339 250-647 19-398 (423)
128 2r2n_A Kynurenine/alpha-aminoa 99.9 7.7E-22 2.6E-26 226.3 26.4 304 292-645 77-421 (425)
129 3ez1_A Aminotransferase MOCR f 99.9 6.2E-23 2.1E-27 235.5 16.7 303 297-647 70-414 (423)
130 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 7.9E-23 2.7E-27 230.2 16.1 325 254-645 9-367 (371)
131 3fsl_A Aromatic-amino-acid ami 99.9 3.7E-22 1.3E-26 226.9 20.9 345 251-644 23-396 (397)
132 1qz9_A Kynureninase; kynurenin 99.9 2E-21 6.8E-26 222.4 25.9 337 252-645 27-399 (416)
133 1ax4_A Tryptophanase; tryptoph 99.9 1.2E-21 4.2E-26 227.7 23.6 352 252-646 41-439 (467)
134 3p1t_A Putative histidinol-pho 99.9 2.9E-21 9.7E-26 214.3 24.6 313 252-644 14-333 (337)
135 1yaa_A Aspartate aminotransfer 99.9 5.1E-22 1.7E-26 227.0 18.6 342 252-645 27-408 (412)
136 3cai_A Possible aminotransfera 99.9 6.1E-21 2.1E-25 217.6 27.3 335 252-643 25-404 (406)
137 3ppl_A Aspartate aminotransfer 99.9 2.1E-22 7.2E-27 231.2 14.7 343 255-646 34-418 (427)
138 1eg5_A Aminotransferase; PLP-d 99.9 2.3E-21 8E-26 219.2 23.0 328 255-645 3-373 (384)
139 1uu1_A Histidinol-phosphate am 99.9 1.2E-21 4.1E-26 217.1 19.7 308 254-643 19-333 (335)
140 3g7q_A Valine-pyruvate aminotr 99.9 1.1E-21 3.7E-26 224.7 19.8 344 253-646 30-411 (417)
141 3d6k_A Putative aminotransfera 99.9 3.9E-22 1.3E-26 228.5 15.9 344 256-646 34-416 (422)
142 3e9k_A Kynureninase; kynurenin 99.9 6.9E-22 2.4E-26 229.5 17.1 353 250-647 64-460 (465)
143 3zrp_A Serine-pyruvate aminotr 99.9 1.8E-21 6.2E-26 220.1 20.0 318 271-646 13-361 (384)
144 1m32_A 2-aminoethylphosphonate 99.9 3.6E-21 1.2E-25 216.0 21.1 331 256-645 5-362 (366)
145 1v72_A Aldolase; PLP-dependent 99.9 8.3E-21 2.8E-25 212.3 23.4 323 253-647 6-352 (356)
146 3if2_A Aminotransferase; YP_26 99.9 6.8E-21 2.3E-25 219.9 23.1 307 296-646 86-438 (444)
147 2oqx_A Tryptophanase; lyase, p 99.9 9.7E-22 3.3E-26 228.6 16.1 357 252-646 39-440 (467)
148 3kgw_A Alanine-glyoxylate amin 99.9 2.6E-21 9E-26 219.5 18.4 319 271-645 34-385 (393)
149 3f0h_A Aminotransferase; RER07 99.9 5E-21 1.7E-25 215.9 20.2 316 271-645 30-371 (376)
150 2rfv_A Methionine gamma-lyase; 99.9 5.7E-21 1.9E-25 217.0 20.7 309 272-643 39-395 (398)
151 2dkj_A Serine hydroxymethyltra 99.9 5.8E-21 2E-25 217.9 20.6 329 254-646 23-386 (407)
152 2ez2_A Beta-tyrosinase, tyrosi 99.9 2.2E-20 7.4E-25 216.5 25.0 348 252-645 40-428 (456)
153 3nnk_A Ureidoglycine-glyoxylat 99.9 8.3E-21 2.8E-25 216.8 21.1 320 271-646 24-388 (411)
154 2z9v_A Aspartate aminotransfer 99.9 1.2E-20 4.1E-25 214.0 21.9 333 253-645 8-368 (392)
155 2qgq_A Protein TM_1862; alpha- 99.9 1.2E-20 4.1E-25 204.2 20.1 195 683-884 6-215 (304)
156 3mad_A Sphingosine-1-phosphate 99.9 2.4E-20 8.3E-25 219.1 24.4 331 270-647 107-468 (514)
157 2huf_A Alanine glyoxylate amin 99.9 1.2E-20 4.2E-25 214.0 21.0 334 251-645 16-380 (393)
158 3vax_A Putative uncharacterize 99.9 3E-21 1E-25 219.6 15.9 337 247-645 14-397 (400)
159 3a9z_A Selenocysteine lyase; P 99.9 2.5E-20 8.4E-25 214.4 23.5 354 252-645 17-425 (432)
160 2oga_A Transaminase; PLP-depen 99.8 2E-20 6.9E-25 212.6 21.9 322 254-646 30-394 (399)
161 1cs1_A CGS, protein (cystathio 99.8 5.3E-20 1.8E-24 208.1 24.9 286 292-643 47-382 (386)
162 4hvk_A Probable cysteine desul 99.8 5.5E-20 1.9E-24 207.6 24.8 333 255-647 2-372 (382)
163 4eb5_A Probable cysteine desul 99.8 9.7E-20 3.3E-24 205.7 25.2 333 255-647 2-372 (382)
164 3qhx_A Cystathionine gamma-syn 99.8 9.6E-20 3.3E-24 205.9 23.7 284 292-641 61-391 (392)
165 2ch1_A 3-hydroxykynurenine tra 99.8 3.8E-20 1.3E-24 210.3 20.5 319 271-645 29-380 (396)
166 2cb1_A O-acetyl homoserine sul 99.8 2.7E-19 9.2E-24 204.0 27.2 303 267-643 29-411 (412)
167 2yrr_A Aminotransferase, class 99.8 2.2E-20 7.6E-25 208.4 17.7 314 271-644 11-349 (353)
168 3f6t_A Aspartate aminotransfer 99.8 2.1E-20 7.2E-25 219.5 18.1 356 252-647 97-524 (533)
169 1iug_A Putative aspartate amin 99.8 3.1E-20 1.1E-24 207.2 18.6 312 271-645 12-345 (352)
170 3meb_A Aspartate aminotransfer 99.8 5.1E-20 1.7E-24 212.3 20.9 342 250-645 44-441 (448)
171 3isl_A Purine catabolism prote 99.8 3.6E-20 1.2E-24 211.8 19.5 327 267-645 14-387 (416)
172 1gc0_A Methionine gamma-lyase; 99.8 2.2E-19 7.5E-24 203.8 25.5 288 292-643 60-396 (398)
173 3lws_A Aromatic amino acid bet 99.8 8.7E-20 3E-24 204.1 21.1 332 254-644 3-355 (357)
174 1wyu_B Glycine dehydrogenase s 99.8 2.8E-19 9.7E-24 207.4 23.0 332 268-647 75-440 (474)
175 2vi8_A Serine hydroxymethyltra 99.8 2.4E-19 8.4E-24 204.2 22.0 329 253-646 23-385 (405)
176 2qma_A Diaminobutyrate-pyruvat 99.8 8.6E-19 2.9E-23 204.9 26.7 355 249-645 96-493 (497)
177 3tcm_A Alanine aminotransferas 99.8 5.1E-19 1.7E-23 206.5 24.6 330 271-646 107-492 (500)
178 3acz_A Methionine gamma-lyase; 99.8 7.4E-19 2.5E-23 198.6 24.0 306 267-641 31-386 (389)
179 4eu1_A Mitochondrial aspartate 99.8 4.8E-20 1.6E-24 210.3 14.4 333 254-644 41-407 (409)
180 3pj0_A LMO0305 protein; struct 99.8 1.8E-19 6E-24 201.8 18.6 311 272-643 28-357 (359)
181 1jg8_A L-ALLO-threonine aldola 99.8 6.1E-19 2.1E-23 196.3 22.8 328 254-645 3-343 (347)
182 3mc6_A Sphingosine-1-phosphate 99.8 3.7E-19 1.3E-23 208.4 21.3 328 270-645 75-434 (497)
183 3dr4_A Putative perosamine syn 99.8 3.1E-19 1.1E-23 202.3 18.9 313 272-645 35-390 (391)
184 3uwc_A Nucleotide-sugar aminot 99.8 4.5E-19 1.5E-23 199.7 19.4 306 275-645 21-368 (374)
185 7aat_A Aspartate aminotransfer 99.8 9E-19 3.1E-23 199.2 20.7 340 255-644 29-399 (401)
186 3frk_A QDTB; aminotransferase, 99.8 5.1E-19 1.7E-23 199.2 18.3 310 273-647 17-367 (373)
187 3gbx_A Serine hydroxymethyltra 99.8 1.5E-19 5.2E-24 207.0 14.0 336 249-646 22-394 (420)
188 3nmy_A Xometc, cystathionine g 99.8 1.1E-18 3.8E-23 197.0 20.3 240 291-589 61-321 (400)
189 3ndn_A O-succinylhomoserine su 99.8 1.5E-18 5E-23 196.9 20.5 268 291-615 75-359 (414)
190 3nyt_A Aminotransferase WBPE; 99.8 1.6E-18 5.3E-23 194.6 20.4 304 273-643 16-359 (367)
191 1mdo_A ARNB aminotransferase; 99.8 3.9E-18 1.3E-22 193.4 23.8 313 272-646 19-384 (393)
192 3h7f_A Serine hydroxymethyltra 99.8 3.1E-18 1E-22 197.4 22.5 339 271-672 57-432 (447)
193 2bkw_A Alanine-glyoxylate amin 99.8 2.4E-18 8.3E-23 194.4 20.6 316 272-646 17-382 (385)
194 2fnu_A Aminotransferase; prote 99.8 6.3E-18 2.2E-22 190.3 23.9 311 271-645 11-369 (375)
195 1e5e_A MGL, methionine gamma-l 99.8 2.4E-18 8.3E-23 195.2 20.2 282 294-645 59-392 (404)
196 3ecd_A Serine hydroxymethyltra 99.8 2.7E-18 9.1E-23 196.9 20.4 329 255-647 33-396 (425)
197 1pff_A Methionine gamma-lyase; 99.8 6.4E-18 2.2E-22 186.8 22.7 276 301-643 2-329 (331)
198 2po3_A 4-dehydrase; external a 99.8 4.2E-17 1.4E-21 186.8 29.7 319 266-650 26-388 (424)
199 1b9h_A AHBA synthase, protein 99.8 1.4E-17 4.8E-22 188.4 24.7 312 272-644 16-384 (388)
200 3ihj_A Alanine aminotransferas 99.8 5.5E-18 1.9E-22 197.4 21.8 333 271-647 102-492 (498)
201 2ctz_A O-acetyl-L-homoserine s 99.8 4.3E-18 1.5E-22 194.3 20.4 244 292-589 53-345 (421)
202 1olt_A Oxygen-independent copr 99.8 2.4E-18 8.1E-23 196.9 17.1 199 691-894 61-278 (457)
203 2aeu_A Hypothetical protein MJ 99.8 8.1E-18 2.8E-22 188.9 20.3 321 250-644 23-367 (374)
204 3k7y_A Aspartate aminotransfer 99.8 1.2E-17 4E-22 188.6 19.8 340 254-645 29-402 (405)
205 1o69_A Aminotransferase; struc 99.8 5E-17 1.7E-21 184.1 24.9 316 272-644 11-383 (394)
206 3ffr_A Phosphoserine aminotran 99.8 2.4E-17 8.1E-22 184.5 21.6 312 271-644 15-360 (362)
207 3b8x_A WBDK, pyridoxamine 5-ph 99.8 2E-16 7E-21 179.0 29.1 324 262-641 2-389 (390)
208 3n0l_A Serine hydroxymethyltra 99.8 2.1E-17 7.2E-22 188.9 20.7 328 255-646 26-387 (417)
209 1ibj_A CBL, cystathionine beta 99.7 8.3E-18 2.9E-22 193.2 15.5 284 294-645 130-459 (464)
210 3cog_A Cystathionine gamma-lya 99.7 4.9E-17 1.7E-21 184.2 21.2 286 292-644 62-398 (403)
211 1n8p_A Cystathionine gamma-lya 99.7 6E-17 2E-21 182.9 21.5 287 292-643 50-390 (393)
212 1qgn_A Protein (cystathionine 99.7 1.1E-16 3.7E-21 182.4 21.7 241 292-589 109-367 (445)
213 2zy4_A L-aspartate beta-decarb 99.7 1.2E-16 4.1E-21 187.4 21.5 358 252-645 98-519 (546)
214 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.7 3.3E-16 1.1E-20 180.0 24.6 331 252-644 29-432 (437)
215 2c81_A Glutamine-2-deoxy-scyll 99.7 5.1E-16 1.7E-20 177.4 25.2 316 272-645 15-411 (418)
216 2jis_A Cysteine sulfinic acid 99.7 1.3E-15 4.5E-20 178.5 29.1 315 297-644 148-511 (515)
217 2okj_A Glutamate decarboxylase 99.7 1.8E-15 6.1E-20 177.0 29.6 314 299-645 134-499 (504)
218 2dgk_A GAD-beta, GADB, glutama 99.7 5.9E-15 2E-19 170.2 28.0 334 270-646 53-432 (452)
219 1tv8_A MOAA, molybdenum cofact 99.7 2.2E-15 7.5E-20 166.4 22.2 198 683-888 16-222 (340)
220 3ht4_A Aluminum resistance pro 99.7 1.1E-15 3.8E-20 173.6 19.5 297 271-611 36-345 (431)
221 2z67_A O-phosphoseryl-tRNA(SEC 99.7 1.9E-15 6.4E-20 174.3 20.4 334 252-644 79-454 (456)
222 2x3l_A ORN/Lys/Arg decarboxyla 99.7 1.8E-16 6.3E-21 181.9 11.8 283 295-644 55-349 (446)
223 4h51_A Aspartate aminotransfer 99.6 4.5E-15 1.5E-19 167.3 21.2 354 251-647 41-416 (420)
224 2fq6_A Cystathionine beta-lyas 99.6 1.4E-15 4.7E-20 172.3 17.1 292 291-643 76-413 (415)
225 3ri6_A O-acetylhomoserine sulf 99.6 6.1E-15 2.1E-19 167.4 20.9 258 292-613 77-373 (430)
226 2yx0_A Radical SAM enzyme; pre 99.6 6.2E-15 2.1E-19 162.8 19.2 203 690-898 79-311 (342)
227 3hbx_A GAD 1, glutamate decarb 99.6 1.3E-14 4.3E-19 169.1 21.8 352 251-646 52-442 (502)
228 3ju7_A Putative PLP-dependent 99.6 3.7E-14 1.3E-18 159.0 23.6 320 271-649 14-376 (377)
229 1w23_A Phosphoserine aminotran 99.6 2.8E-15 9.6E-20 167.5 14.4 310 271-644 14-356 (360)
230 3c8f_A Pyruvate formate-lyase 99.6 2.1E-14 7.1E-19 151.0 19.5 194 689-891 26-238 (245)
231 1rv3_A Serine hydroxymethyltra 99.6 8.7E-15 3E-19 169.8 17.9 334 255-646 45-429 (483)
232 3vp6_A Glutamate decarboxylase 99.6 2.5E-13 8.5E-18 158.4 29.4 313 298-644 136-501 (511)
233 2c0r_A PSAT, phosphoserine ami 99.6 8.5E-15 2.9E-19 163.8 15.4 322 252-644 2-357 (362)
234 2a7v_A Serine hydroxymethyltra 99.6 3.9E-14 1.3E-18 162.4 19.9 316 271-647 66-440 (490)
235 3bwn_A AT1G70560, L-tryptophan 99.6 2.4E-14 8.4E-19 161.6 16.8 270 296-646 71-385 (391)
236 4e1o_A HDC, histidine decarbox 99.5 3.7E-13 1.3E-17 156.1 25.4 307 297-645 118-475 (481)
237 2fyf_A PSAT, phosphoserine ami 99.5 8E-14 2.7E-18 158.0 19.2 310 271-644 51-394 (398)
238 1js3_A DDC;, DOPA decarboxylas 99.5 6.5E-13 2.2E-17 154.6 25.8 332 275-645 90-471 (486)
239 3jzl_A Putative cystathionine 99.5 2.6E-13 8.8E-18 152.7 20.5 294 271-612 30-340 (409)
240 3k40_A Aromatic-L-amino-acid d 99.5 7.5E-13 2.6E-17 153.0 23.6 308 298-645 114-468 (475)
241 2z2u_A UPF0026 protein MJ0257; 99.5 1.7E-13 6E-18 149.2 14.0 197 683-891 53-282 (311)
242 1wyu_A Glycine dehydrogenase ( 99.4 9.6E-13 3.3E-17 151.0 18.1 291 296-644 107-436 (438)
243 3hvy_A Cystathionine beta-lyas 99.4 4.2E-12 1.4E-16 143.2 22.8 295 271-611 45-356 (427)
244 3i16_A Aluminum resistance pro 99.4 7.4E-12 2.5E-16 141.2 23.7 294 272-611 45-356 (427)
245 1c4k_A Protein (ornithine deca 99.4 5.5E-12 1.9E-16 151.1 21.4 308 294-645 170-563 (730)
246 2hox_A ALLIIN lyase 1; cystein 99.4 1.3E-12 4.5E-17 148.9 14.8 318 254-645 56-422 (427)
247 3rfa_A Ribosomal RNA large sub 99.4 5.9E-12 2E-16 138.4 16.5 189 689-892 122-337 (404)
248 2vyc_A Biodegradative arginine 99.3 1.6E-11 5.6E-16 148.6 19.1 311 295-645 203-602 (755)
249 2a5h_A L-lysine 2,3-aminomutas 99.3 5.3E-12 1.8E-16 141.8 13.2 191 683-894 117-320 (416)
250 3e77_A Phosphoserine aminotran 99.3 1.4E-11 4.7E-16 136.3 15.1 319 269-645 22-372 (377)
251 3qm2_A Phosphoserine aminotran 99.3 4.2E-12 1.4E-16 141.4 8.0 322 254-644 27-381 (386)
252 3n75_A LDC, lysine decarboxyla 99.2 1.5E-10 5.2E-15 137.4 17.3 308 294-643 192-555 (715)
253 3m5u_A Phosphoserine aminotran 99.2 6.1E-10 2.1E-14 122.7 20.4 309 271-644 16-356 (361)
254 3hl2_A O-phosphoseryl-tRNA(SEC 99.0 9.9E-09 3.4E-13 112.7 21.4 289 315-648 135-461 (501)
255 3bc8_A O-phosphoseryl-tRNA(SEC 98.9 7.7E-08 2.7E-12 107.4 21.8 302 298-645 99-440 (450)
256 3can_A Pyruvate-formate lyase- 98.7 3.6E-07 1.2E-11 90.5 15.7 153 733-892 5-174 (182)
257 2cw6_A Hydroxymethylglutaryl-C 98.3 2.6E-05 8.9E-10 83.2 19.7 223 715-952 24-266 (298)
258 3ou5_A Serine hydroxymethyltra 98.3 4.3E-05 1.5E-09 83.8 19.9 288 298-645 100-438 (490)
259 1ydo_A HMG-COA lyase; TIM-barr 98.2 0.00021 7.3E-09 76.0 22.9 225 714-952 24-267 (307)
260 1ydn_A Hydroxymethylglutaryl-C 98.2 0.00013 4.5E-09 77.8 21.2 223 715-952 23-265 (295)
261 4fhd_A Spore photoproduct lyas 98.1 5E-06 1.7E-10 89.5 7.7 162 684-850 110-282 (368)
262 2ftp_A Hydroxymethylglutaryl-C 98.1 0.00025 8.6E-09 75.6 21.0 225 714-952 26-269 (302)
263 3ble_A Citramalate synthase fr 97.9 0.00045 1.5E-08 74.7 20.4 217 715-951 38-273 (337)
264 1nvm_A HOA, 4-hydroxy-2-oxoval 97.6 0.0022 7.4E-08 69.7 18.4 216 715-955 27-257 (345)
265 3rmj_A 2-isopropylmalate synth 97.5 0.0054 1.8E-07 66.8 20.3 218 714-952 30-268 (370)
266 3ewb_X 2-isopropylmalate synth 97.5 0.0075 2.6E-07 63.6 20.7 228 714-962 23-274 (293)
267 3eeg_A 2-isopropylmalate synth 97.4 0.0027 9.2E-08 68.0 16.4 217 714-951 24-261 (325)
268 1rqb_A Transcarboxylase 5S sub 97.3 0.0042 1.4E-07 70.5 16.4 212 715-951 44-279 (539)
269 2nx9_A Oxaloacetate decarboxyl 97.2 0.014 4.6E-07 65.4 19.3 213 715-952 27-261 (464)
270 3bg3_A Pyruvate carboxylase, m 97.0 0.029 1E-06 66.1 20.5 214 715-952 122-365 (718)
271 3ivs_A Homocitrate synthase, m 97.0 0.023 7.9E-07 62.5 18.2 207 714-944 57-275 (423)
272 3inp_A D-ribulose-phosphate 3- 97.0 0.013 4.4E-07 59.6 15.0 200 715-945 37-240 (246)
273 1h5y_A HISF; histidine biosynt 96.8 0.017 5.7E-07 59.8 15.2 204 718-951 33-251 (253)
274 1k8w_A TRNA pseudouridine synt 96.7 0.0017 5.8E-08 68.1 5.9 70 36-121 25-94 (327)
275 2ztj_A Homocitrate synthase; ( 96.6 0.095 3.3E-06 57.4 19.8 207 714-946 21-243 (382)
276 1r3e_A TRNA pseudouridine synt 96.5 0.0016 5.4E-08 67.8 4.4 70 36-121 3-72 (309)
277 1sgv_A TRNA pseudouridine synt 96.4 0.0018 6.2E-08 67.4 4.4 71 35-121 5-75 (316)
278 3k13_A 5-methyltetrahydrofolat 96.3 0.12 4E-06 54.1 17.5 216 713-946 32-274 (300)
279 2aus_C Pseudouridine synthase; 96.3 0.0023 7.7E-08 68.3 4.4 73 33-121 43-115 (334)
280 2apo_A Probable tRNA pseudouri 96.2 0.0027 9.3E-08 67.9 4.3 73 33-121 63-135 (357)
281 3u28_A H/ACA ribonucleoprotein 96.1 0.0035 1.2E-07 67.4 4.7 73 33-121 56-128 (400)
282 3qja_A IGPS, indole-3-glycerol 96.1 0.37 1.3E-05 49.9 19.7 195 719-954 73-268 (272)
283 3lot_A Uncharacterized protein 95.9 0.49 1.7E-05 49.6 19.3 235 714-962 28-304 (314)
284 3ovp_A Ribulose-phosphate 3-ep 95.7 0.13 4.6E-06 51.8 14.0 197 715-946 14-215 (228)
285 3ctl_A D-allulose-6-phosphate 95.7 0.17 5.7E-06 51.1 14.5 193 716-946 11-215 (231)
286 1eye_A DHPS 1, dihydropteroate 95.5 0.16 5.5E-06 52.6 13.7 137 714-852 25-200 (280)
287 1thf_D HISF protein; thermophI 95.3 0.58 2E-05 48.0 17.6 206 720-952 32-249 (253)
288 3tsm_A IGPS, indole-3-glycerol 95.3 1.8 6.2E-05 44.4 20.7 174 721-933 82-256 (272)
289 2p10_A MLL9387 protein; putati 95.2 0.28 9.7E-06 49.9 14.0 164 750-929 79-262 (286)
290 3e49_A Uncharacterized protein 95.1 3 0.0001 43.7 22.0 236 714-962 28-301 (311)
291 2yci_X 5-methyltetrahydrofolat 95.0 0.46 1.6E-05 49.0 15.5 187 714-925 30-237 (271)
292 3e02_A Uncharacterized protein 95.0 3.4 0.00012 43.3 22.0 236 714-962 28-301 (311)
293 1tqj_A Ribulose-phosphate 3-ep 94.9 0.15 5.2E-06 51.6 11.5 199 716-946 15-219 (230)
294 2ekc_A AQ_1548, tryptophan syn 94.5 1.8 6E-05 44.6 18.5 185 716-930 29-238 (262)
295 3no5_A Uncharacterized protein 94.5 3 0.0001 42.9 19.9 232 714-962 26-272 (275)
296 1f6y_A 5-methyltetrahydrofolat 94.3 1.6 5.6E-05 44.7 17.4 193 713-927 20-230 (262)
297 1aj0_A DHPS, dihydropteroate s 94.2 0.33 1.1E-05 50.4 12.1 137 714-852 34-208 (282)
298 2qf7_A Pyruvate carboxylase pr 94.2 0.61 2.1E-05 58.7 16.7 211 715-952 570-812 (1165)
299 1x7f_A Outer surface protein; 94.1 0.37 1.3E-05 51.9 12.5 89 716-804 39-135 (385)
300 3tr9_A Dihydropteroate synthas 94.1 0.89 3E-05 47.5 15.0 138 714-852 45-225 (314)
301 3dxi_A Putative aldolase; TIM 94.0 0.49 1.7E-05 50.1 13.2 201 715-946 21-240 (320)
302 1ka9_F Imidazole glycerol phos 93.9 2.1 7.2E-05 43.7 17.8 206 719-951 32-249 (252)
303 2dqw_A Dihydropteroate synthas 93.9 0.39 1.3E-05 50.0 11.8 137 714-852 48-220 (294)
304 3vnd_A TSA, tryptophan synthas 93.8 0.62 2.1E-05 47.9 13.2 185 716-929 30-238 (267)
305 2v82_A 2-dehydro-3-deoxy-6-pho 93.7 2.8 9.5E-05 41.5 17.8 166 713-932 14-182 (212)
306 3c6c_A 3-keto-5-aminohexanoate 93.5 4.4 0.00015 42.3 19.0 230 714-962 44-310 (316)
307 2y88_A Phosphoribosyl isomeras 93.4 0.94 3.2E-05 46.1 13.9 187 719-932 32-231 (244)
308 2y5s_A DHPS, dihydropteroate s 93.3 0.48 1.6E-05 49.4 11.4 137 714-852 42-217 (294)
309 2y7e_A 3-keto-5-aminohexanoate 93.3 7.5 0.00026 40.0 20.2 230 714-962 30-278 (282)
310 3hq1_A 2-isopropylmalate synth 93.3 2.4 8.2E-05 48.8 18.1 219 714-952 89-339 (644)
311 1vzw_A Phosphoribosyl isomeras 93.1 1.3 4.4E-05 45.1 14.5 196 719-943 33-238 (244)
312 3f4w_A Putative hexulose 6 pho 92.6 0.93 3.2E-05 45.0 12.2 188 715-944 10-203 (211)
313 2vp8_A Dihydropteroate synthas 92.6 0.52 1.8E-05 49.6 10.4 77 714-790 61-142 (318)
314 1qop_A Tryptophan synthase alp 92.6 2.5 8.5E-05 43.6 15.7 186 716-930 29-238 (268)
315 3cu2_A Ribulose-5-phosphate 3- 92.5 0.32 1.1E-05 49.2 8.5 192 716-946 24-234 (237)
316 2w6r_A Imidazole glycerol phos 92.5 0.98 3.3E-05 46.7 12.7 207 720-950 32-252 (266)
317 3ajx_A 3-hexulose-6-phosphate 92.5 3.9 0.00013 40.2 16.6 188 715-945 10-203 (207)
318 1rd5_A Tryptophan synthase alp 92.4 1.7 5.7E-05 44.8 14.1 182 717-930 31-234 (262)
319 1tx2_A DHPS, dihydropteroate s 92.1 0.42 1.4E-05 49.8 9.1 137 714-852 59-227 (297)
320 4hb7_A Dihydropteroate synthas 92.0 0.97 3.3E-05 46.0 11.3 137 714-852 26-193 (270)
321 2yw3_A 4-hydroxy-2-oxoglutarat 92.0 7.1 0.00024 38.4 17.6 163 715-931 22-184 (207)
322 1rpx_A Protein (ribulose-phosp 92.0 1.6 5.5E-05 43.9 13.2 194 715-945 20-224 (230)
323 2wqp_A Polysialic acid capsule 91.8 10 0.00034 40.3 19.3 181 716-929 33-237 (349)
324 4gj1_A 1-(5-phosphoribosyl)-5- 91.8 0.075 2.6E-06 54.3 2.8 194 722-944 35-241 (243)
325 3o63_A Probable thiamine-phosp 91.4 5.1 0.00017 40.5 16.0 180 720-944 45-235 (243)
326 3nav_A Tryptophan synthase alp 91.4 5.2 0.00018 41.1 16.2 186 716-930 32-241 (271)
327 2vef_A Dihydropteroate synthas 91.3 1.3 4.3E-05 46.7 11.7 137 714-852 29-224 (314)
328 1h1y_A D-ribulose-5-phosphate 91.3 1.9 6.6E-05 43.3 12.8 194 716-945 17-218 (228)
329 1hg3_A Triosephosphate isomera 91.0 12 0.0004 37.2 17.8 131 778-932 81-211 (225)
330 2fli_A Ribulose-phosphate 3-ep 91.0 2.1 7.2E-05 42.6 12.8 195 715-945 13-215 (220)
331 4e38_A Keto-hydroxyglutarate-a 90.9 2.2 7.6E-05 42.6 12.4 162 714-929 42-205 (232)
332 1vli_A Spore coat polysacchari 90.8 9.4 0.00032 41.1 18.0 181 716-929 42-249 (385)
333 1jub_A Dihydroorotate dehydrog 90.7 2.4 8.2E-05 44.9 13.5 206 747-963 74-309 (311)
334 3tdn_A FLR symmetric alpha-bet 90.2 0.34 1.2E-05 49.6 6.1 75 719-795 36-111 (247)
335 3chv_A Prokaryotic domain of u 90.2 18 0.00063 37.1 20.5 230 714-962 30-276 (284)
336 1tqx_A D-ribulose-5-phosphate 89.9 2.2 7.7E-05 42.6 11.6 198 715-945 15-218 (227)
337 1vs1_A 3-deoxy-7-phosphoheptul 89.9 9.8 0.00034 39.1 16.7 184 716-929 50-245 (276)
338 3hbl_A Pyruvate carboxylase; T 89.8 10 0.00035 47.5 20.0 215 715-953 552-796 (1150)
339 3igs_A N-acetylmannosamine-6-p 89.7 16 0.00056 36.4 17.9 172 713-929 31-213 (232)
340 3q58_A N-acetylmannosamine-6-p 89.5 16 0.00056 36.3 17.7 172 713-929 31-213 (229)
341 2p0o_A Hypothetical protein DU 89.4 8.4 0.00029 41.2 16.0 87 717-803 16-110 (372)
342 3nvt_A 3-deoxy-D-arabino-heptu 89.3 20 0.00067 38.8 19.2 202 716-946 154-373 (385)
343 1vc4_A Indole-3-glycerol phosp 89.1 21 0.00071 36.2 18.6 178 718-932 65-242 (254)
344 1wa3_A 2-keto-3-deoxy-6-phosph 88.9 18 0.00061 35.2 19.9 164 713-931 17-183 (205)
345 1xi3_A Thiamine phosphate pyro 87.5 20 0.00068 35.1 17.0 165 719-932 27-196 (215)
346 3kts_A Glycerol uptake operon 87.5 21 0.00071 34.3 17.2 161 716-931 18-184 (192)
347 4i6k_A Amidohydrolase family p 87.3 13 0.00045 38.6 16.2 210 715-952 53-275 (294)
348 1mxs_A KDPG aldolase; 2-keto-3 87.3 25 0.00084 34.9 17.8 158 715-929 35-197 (225)
349 1geq_A Tryptophan synthase alp 87.2 12 0.00041 37.8 15.4 184 716-930 17-224 (248)
350 2bmb_A Folic acid synthesis pr 87.2 2.8 9.7E-05 47.3 11.2 137 716-852 247-459 (545)
351 3zwt_A Dihydroorotate dehydrog 86.6 11 0.00038 40.5 15.3 139 786-930 177-331 (367)
352 1zco_A 2-dehydro-3-deoxyphosph 86.6 30 0.001 35.2 20.7 184 716-929 35-230 (262)
353 3khj_A Inosine-5-monophosphate 86.4 23 0.0008 38.0 17.6 158 747-932 78-242 (361)
354 3i65_A Dihydroorotate dehydrog 86.3 28 0.00097 37.9 18.2 159 786-950 212-402 (415)
355 3lab_A Putative KDPG (2-keto-3 86.2 4.2 0.00014 40.0 10.5 166 712-932 19-192 (217)
356 3b0p_A TRNA-dihydrouridine syn 85.8 7.2 0.00025 41.9 13.3 147 777-932 75-231 (350)
357 1yxy_A Putative N-acetylmannos 84.6 21 0.00071 35.6 15.5 169 715-930 31-219 (234)
358 1vhc_A Putative KHG/KDPG aldol 84.1 35 0.0012 33.8 17.8 161 714-929 25-188 (224)
359 1vr6_A Phospho-2-dehydro-3-deo 83.9 38 0.0013 36.0 17.4 183 716-929 118-313 (350)
360 3ndo_A Deoxyribose-phosphate a 83.6 37 0.0013 33.6 17.7 175 714-922 25-215 (231)
361 2bdq_A Copper homeostasis prot 82.8 6.4 0.00022 38.7 10.0 139 716-874 74-220 (224)
362 1wbh_A KHG/KDPG aldolase; lyas 82.5 39 0.0013 33.2 16.2 162 713-929 23-187 (214)
363 3mcm_A 2-amino-4-hydroxy-6-hyd 82.2 3.9 0.00013 44.9 9.2 74 715-788 209-294 (442)
364 3g8r_A Probable spore coat pol 82.0 39 0.0013 35.8 16.5 182 717-929 20-226 (350)
365 4gxw_A Adenosine deaminase; am 81.8 3.3 0.00011 45.0 8.5 78 715-795 162-245 (380)
366 3sz8_A 2-dehydro-3-deoxyphosph 81.3 29 0.00099 35.6 14.7 204 716-947 32-269 (285)
367 3gk0_A PNP synthase, pyridoxin 81.3 3.3 0.00011 41.5 7.4 110 717-839 104-226 (278)
368 1w0m_A TIM, triosephosphate is 81.2 14 0.00047 36.7 12.0 132 778-933 78-209 (226)
369 3oa3_A Aldolase; structural ge 80.5 55 0.0019 33.5 19.9 180 714-922 70-259 (288)
370 1yad_A Regulatory protein TENI 80.1 47 0.0016 32.6 17.5 167 716-932 28-198 (221)
371 2jgq_A Triosephosphate isomera 79.4 28 0.00097 34.5 13.6 135 778-928 74-219 (233)
372 2e6f_A Dihydroorotate dehydrog 79.4 9.9 0.00034 40.1 11.2 207 748-964 77-312 (314)
373 1m5w_A Pyridoxal phosphate bio 79.3 2 6.8E-05 42.4 5.0 109 717-838 76-197 (243)
374 2tps_A Protein (thiamin phosph 79.2 51 0.0017 32.4 17.0 169 720-932 33-206 (227)
375 3gnh_A L-lysine, L-arginine ca 79.2 15 0.00053 39.9 13.3 83 715-799 164-254 (403)
376 3bw2_A 2-nitropropane dioxygen 78.9 58 0.002 35.0 17.4 188 715-934 45-245 (369)
377 3oix_A Putative dihydroorotate 78.2 23 0.00079 37.7 13.5 175 746-928 109-306 (345)
378 1to3_A Putative aldolase YIHT; 77.8 19 0.00066 37.6 12.5 136 776-930 112-258 (304)
379 4a29_A Engineered retro-aldol 77.5 62 0.0021 32.5 17.8 176 715-933 64-240 (258)
380 1q7z_A 5-methyltetrahydrofolat 77.5 49 0.0017 37.9 16.8 186 714-927 336-539 (566)
381 4fo4_A Inosine 5'-monophosphat 77.5 62 0.0021 34.6 16.7 159 747-933 79-247 (366)
382 1thf_D HISF protein; thermophI 77.2 13 0.00046 37.6 11.1 95 722-828 155-250 (253)
383 1n7k_A Deoxyribose-phosphate a 76.6 60 0.0021 32.2 15.1 173 715-922 33-217 (234)
384 4ef8_A Dihydroorotate dehydrog 75.8 23 0.00078 37.9 12.6 198 746-950 108-334 (354)
385 3nl6_A Thiamine biosynthetic b 75.8 33 0.0011 39.0 14.7 173 719-931 26-214 (540)
386 1ka9_F Imidazole glycerol phos 74.7 15 0.00051 37.2 10.6 92 723-827 157-250 (252)
387 1f76_A Dihydroorotate dehydrog 74.6 76 0.0026 33.5 16.6 103 823-931 211-323 (336)
388 1qwg_A PSL synthase;, (2R)-pho 73.7 76 0.0026 31.6 15.3 131 715-861 23-168 (251)
389 3jr2_A Hexulose-6-phosphate sy 73.5 38 0.0013 33.3 13.0 177 715-929 16-197 (218)
390 1ep3_A Dihydroorotate dehydrog 73.4 38 0.0013 35.3 13.8 177 747-933 79-277 (311)
391 3o6c_A PNP synthase, pyridoxin 73.4 6.9 0.00024 39.0 7.0 113 717-838 75-217 (260)
392 1vcv_A Probable deoxyribose-ph 73.4 57 0.0019 32.2 13.8 185 714-921 13-211 (226)
393 1jvn_A Glutamine, bifunctional 73.1 46 0.0016 38.1 15.2 220 717-951 279-550 (555)
394 1i4n_A Indole-3-glycerol phosp 72.2 85 0.0029 31.5 16.1 174 715-932 61-236 (251)
395 2h6r_A Triosephosphate isomera 72.0 31 0.001 34.1 11.8 130 778-931 75-204 (219)
396 1y0e_A Putative N-acetylmannos 72.0 77 0.0026 31.0 20.0 189 713-947 18-220 (223)
397 4af0_A Inosine-5'-monophosphat 71.8 17 0.00059 40.6 10.6 129 718-861 280-413 (556)
398 1w8s_A FBP aldolase, fructose- 71.8 42 0.0014 34.1 13.1 189 716-945 39-248 (263)
399 3vnd_A TSA, tryptophan synthas 71.6 53 0.0018 33.4 13.7 129 812-950 5-150 (267)
400 3r12_A Deoxyribose-phosphate a 71.5 89 0.003 31.5 19.7 176 715-923 56-242 (260)
401 2r8c_A Putative amidohydrolase 70.9 13 0.00045 40.9 9.9 85 715-801 172-264 (426)
402 2z6i_A Trans-2-enoyl-ACP reduc 70.6 1.1E+02 0.0038 32.2 18.4 163 748-948 47-214 (332)
403 3fs2_A 2-dehydro-3-deoxyphosph 70.6 66 0.0023 33.1 14.0 202 716-947 53-288 (298)
404 3fst_A 5,10-methylenetetrahydr 70.2 64 0.0022 33.5 14.1 116 715-844 94-223 (304)
405 1vkf_A Glycerol uptake operon 69.0 58 0.002 31.0 12.2 144 731-928 31-179 (188)
406 3iv3_A Tagatose 1,6-diphosphat 68.4 95 0.0032 32.6 14.9 142 776-928 114-282 (332)
407 1tv5_A Dhodehase, dihydroorota 68.0 1.5E+02 0.005 32.6 17.5 114 834-950 306-430 (443)
408 4eiv_A Deoxyribose-phosphate a 67.9 40 0.0014 34.5 11.4 136 715-859 97-263 (297)
409 2inf_A URO-D, UPD, uroporphyri 67.2 60 0.0021 34.7 13.9 79 722-802 197-282 (359)
410 2qkf_A 3-deoxy-D-manno-octulos 67.1 72 0.0025 32.7 13.6 186 716-929 27-239 (280)
411 1o60_A 2-dehydro-3-deoxyphosph 66.6 89 0.0031 32.2 14.2 204 716-947 30-267 (292)
412 2ze3_A DFA0005; organic waste 66.6 63 0.0022 33.0 12.9 125 755-892 9-138 (275)
413 2nx9_A Oxaloacetate decarboxyl 66.5 92 0.0032 34.5 15.2 117 716-851 156-277 (464)
414 3noy_A 4-hydroxy-3-methylbut-2 66.5 1.3E+02 0.0046 31.6 15.9 156 715-904 43-213 (366)
415 3apt_A Methylenetetrahydrofola 66.3 27 0.00091 36.6 10.4 106 715-834 83-208 (310)
416 1qo2_A Molecule: N-((5-phospho 65.7 4.2 0.00014 41.1 3.9 201 719-944 31-240 (241)
417 2eja_A URO-D, UPD, uroporphyri 65.7 56 0.0019 34.5 13.2 127 723-852 184-336 (338)
418 3sr7_A Isopentenyl-diphosphate 65.6 38 0.0013 36.3 11.6 140 775-931 158-312 (365)
419 1z41_A YQJM, probable NADH-dep 65.4 81 0.0028 33.3 14.2 159 776-948 148-325 (338)
420 3rys_A Adenosine deaminase 1; 65.1 19 0.00063 38.4 9.0 94 716-826 147-244 (343)
421 1qop_A Tryptophan synthase alp 64.4 57 0.002 33.2 12.4 126 814-949 6-148 (268)
422 3feq_A Putative amidohydrolase 64.4 14 0.00047 40.6 8.3 83 715-799 169-259 (423)
423 2qr6_A IMP dehydrogenase/GMP r 64.3 36 0.0012 37.1 11.4 165 748-932 140-312 (393)
424 1z41_A YQJM, probable NADH-dep 64.2 22 0.00075 37.8 9.5 90 715-804 226-321 (338)
425 3nav_A Tryptophan synthase alp 63.6 83 0.0028 32.0 13.1 129 812-950 7-152 (271)
426 1ydn_A Hydroxymethylglutaryl-C 63.3 1.4E+02 0.0047 30.7 15.3 122 715-851 152-281 (295)
427 2qv5_A AGR_C_5032P, uncharacte 62.9 40 0.0014 34.2 10.4 139 715-867 107-251 (261)
428 2w6r_A Imidazole glycerol phos 62.9 22 0.00075 36.2 8.9 72 716-792 157-229 (266)
429 3bo9_A Putative nitroalkan dio 62.5 1.5E+02 0.0053 30.9 19.0 163 748-948 61-228 (326)
430 3na8_A Putative dihydrodipicol 62.3 1.5E+02 0.0052 30.8 16.0 177 715-927 42-230 (315)
431 2agk_A 1-(5-phosphoribosyl)-5- 62.1 24 0.00082 35.9 8.8 200 719-948 39-260 (260)
432 1vhn_A Putative flavin oxidore 62.0 28 0.00094 36.7 9.7 137 778-932 77-219 (318)
433 3vzx_A Heptaprenylglyceryl pho 61.8 1.3E+02 0.0043 29.7 14.0 165 726-930 26-212 (228)
434 2ekc_A AQ_1548, tryptophan syn 61.6 39 0.0013 34.3 10.4 127 813-949 5-148 (262)
435 3gr7_A NADPH dehydrogenase; fl 60.8 20 0.00068 38.2 8.3 88 716-803 227-320 (340)
436 1rd5_A Tryptophan synthase alp 60.7 80 0.0027 31.9 12.7 124 814-949 7-144 (262)
437 1ub3_A Aldolase protein; schif 60.6 1.3E+02 0.0045 29.5 16.8 181 714-926 15-207 (220)
438 1pii_A N-(5'phosphoribosyl)ant 60.3 1.2E+02 0.004 33.5 14.4 175 715-932 68-242 (452)
439 1mzh_A Deoxyribose-phosphate a 60.2 1.3E+02 0.0046 29.5 17.6 175 714-922 16-200 (225)
440 1q6o_A Humps, 3-keto-L-gulonat 59.6 1.3E+02 0.0045 29.2 14.8 188 715-945 13-208 (216)
441 3ozy_A Putative mandelate race 59.4 1.1E+02 0.0038 33.0 14.2 84 715-804 150-242 (389)
442 3ewb_X 2-isopropylmalate synth 59.1 32 0.0011 35.6 9.4 148 775-946 30-187 (293)
443 3lmz_A Putative sugar isomeras 59.1 47 0.0016 33.4 10.6 102 776-904 65-166 (257)
444 1ujp_A Tryptophan synthase alp 59.0 1.2E+02 0.0041 30.8 13.5 179 716-930 28-233 (271)
445 3gr7_A NADPH dehydrogenase; fl 58.7 1.3E+02 0.0046 31.7 14.4 162 776-951 148-328 (340)
446 3ivs_A Homocitrate synthase, m 58.5 61 0.0021 35.4 11.7 146 775-946 64-217 (423)
447 3ngj_A Deoxyribose-phosphate a 58.5 1.5E+02 0.0051 29.4 18.2 175 714-922 39-225 (239)
448 1r3s_A URO-D, uroporphyrinogen 58.2 1E+02 0.0034 33.0 13.6 76 723-800 202-291 (367)
449 1sfl_A 3-dehydroquinate dehydr 57.8 1.5E+02 0.0052 29.4 17.3 152 715-892 14-181 (238)
450 2h9a_B CO dehydrogenase/acetyl 57.0 47 0.0016 34.6 10.1 131 718-850 74-229 (310)
451 3ceu_A Thiamine phosphate pyro 56.6 1.1E+02 0.0038 29.6 12.4 158 722-931 17-177 (210)
452 3vk5_A MOEO5; TIM barrel, tran 56.5 34 0.0012 34.8 8.5 82 717-805 185-273 (286)
453 3hgj_A Chromate reductase; TIM 56.0 37 0.0013 36.2 9.5 88 715-802 236-330 (349)
454 2qjg_A Putative aldolase MJ040 56.0 86 0.0029 31.8 12.1 193 714-947 41-256 (273)
455 2ftp_A Hydroxymethylglutaryl-C 55.7 1.9E+02 0.0065 29.8 16.7 122 715-851 156-285 (302)
456 2r91_A 2-keto-3-deoxy-(6-phosp 55.5 1.2E+02 0.004 31.2 13.0 43 808-850 75-119 (286)
457 1h5y_A HISF; histidine biosynt 55.3 62 0.0021 32.2 10.8 90 724-827 160-252 (253)
458 1gte_A Dihydropyrimidine dehyd 55.3 88 0.003 38.8 14.1 196 747-950 616-844 (1025)
459 3pao_A Adenosine deaminase; st 55.2 20 0.00068 37.9 7.0 94 716-826 144-241 (326)
460 3rr1_A GALD, putative D-galact 55.1 76 0.0026 34.6 12.0 90 715-805 124-226 (405)
461 1xg4_A Probable methylisocitra 55.0 1.9E+02 0.0066 29.7 18.0 165 756-927 9-188 (295)
462 1p0k_A Isopentenyl-diphosphate 54.4 2.2E+02 0.0074 30.1 16.7 146 771-932 126-286 (349)
463 2p10_A MLL9387 protein; putati 54.4 1.1E+02 0.0037 31.2 11.7 123 715-847 108-249 (286)
464 3fa4_A 2,3-dimethylmalate lyas 54.3 1.6E+02 0.0055 30.3 13.5 154 771-927 24-191 (302)
465 3b0p_A TRNA-dihydrouridine syn 54.0 59 0.002 34.6 10.7 88 716-804 142-239 (350)
466 1twd_A Copper homeostasis prot 53.9 42 0.0014 33.7 8.6 112 716-844 71-187 (256)
467 1jvn_A Glutamine, bifunctional 53.5 59 0.002 37.1 11.2 94 720-827 454-551 (555)
468 1vhn_A Putative flavin oxidore 53.2 12 0.00042 39.5 5.0 95 722-818 144-249 (318)
469 1f76_A Dihydroorotate dehydrog 53.2 66 0.0022 34.0 10.9 78 715-792 222-318 (336)
470 3l5l_A Xenobiotic reductase A; 53.1 31 0.0011 37.1 8.3 88 716-803 244-338 (363)
471 3rmj_A 2-isopropylmalate synth 52.9 51 0.0018 35.4 9.9 147 776-946 38-194 (370)
472 1rqb_A Transcarboxylase 5S sub 52.7 2.6E+02 0.0089 31.5 15.9 118 716-852 173-297 (539)
473 2nuw_A 2-keto-3-deoxygluconate 52.5 1.2E+02 0.0042 31.0 12.5 46 808-859 50-96 (288)
474 3iar_A Adenosine deaminase; pu 52.3 26 0.0009 37.6 7.5 78 718-795 160-239 (367)
475 4avf_A Inosine-5'-monophosphat 52.1 70 0.0024 35.9 11.3 127 719-861 229-361 (490)
476 3tsm_A IGPS, indole-3-glycerol 51.9 33 0.0011 35.1 7.7 66 726-792 184-249 (272)
477 4ay7_A Methylcobalamin\: coenz 51.9 2.3E+02 0.0079 29.8 15.1 69 724-793 196-270 (348)
478 3vzx_A Heptaprenylglyceryl pho 51.3 97 0.0033 30.5 10.8 70 715-792 137-208 (228)
479 3p6l_A Sugar phosphate isomera 50.9 53 0.0018 33.0 9.4 15 936-950 215-229 (262)
480 4exq_A UPD, URO-D, uroporphyri 50.8 75 0.0026 34.1 10.9 70 727-798 206-286 (368)
481 3qja_A IGPS, indole-3-glycerol 50.7 26 0.00089 35.9 6.8 72 716-792 171-242 (272)
482 4e4u_A Mandalate racemase/muco 50.5 1.1E+02 0.0038 33.3 12.4 90 715-804 143-248 (412)
483 3qst_A Triosephosphate isomera 50.4 1.9E+02 0.0063 29.1 12.8 188 715-928 18-238 (255)
484 1w3i_A EDA, 2-keto-3-deoxy glu 50.3 1.2E+02 0.0042 31.2 12.1 99 745-851 15-121 (293)
485 3ble_A Citramalate synthase fr 50.1 1.6E+02 0.0054 31.1 13.1 119 715-851 166-290 (337)
486 3hbl_A Pyruvate carboxylase; T 49.9 1.3E+02 0.0044 37.8 14.1 160 715-896 689-872 (1150)
487 3khj_A Inosine-5-monophosphate 49.2 1.5E+02 0.0051 31.6 12.8 125 721-861 107-236 (361)
488 3q58_A N-acetylmannosamine-6-p 49.0 26 0.00089 34.8 6.4 65 724-792 142-210 (229)
489 4h3d_A 3-dehydroquinate dehydr 48.9 2.2E+02 0.0076 28.6 20.9 150 715-892 29-195 (258)
490 3igs_A N-acetylmannosamine-6-p 48.9 27 0.00094 34.8 6.5 65 724-792 142-210 (232)
491 3apt_A Methylenetetrahydrofola 48.9 1.2E+02 0.0041 31.6 11.7 46 810-858 58-103 (310)
492 3sbf_A Mandelate racemase / mu 48.8 2E+02 0.0068 31.1 14.1 90 715-805 132-249 (401)
493 2czd_A Orotidine 5'-phosphate 48.8 1.1E+02 0.0038 29.5 11.0 181 715-945 9-202 (208)
494 3s5o_A 4-hydroxy-2-oxoglutarat 48.7 74 0.0025 33.1 10.2 135 745-901 30-176 (307)
495 3cyv_A URO-D, UPD, uroporphyri 48.7 95 0.0032 33.0 11.4 73 723-796 192-274 (354)
496 3ndo_A Deoxyribose-phosphate a 48.7 94 0.0032 30.7 10.2 74 716-790 144-217 (231)
497 4djd_D C/Fe-SP, corrinoid/iron 48.6 89 0.003 32.7 10.5 133 718-850 80-236 (323)
498 3tha_A Tryptophan synthase alp 47.9 69 0.0024 32.2 9.2 65 749-819 184-249 (252)
499 1wv2_A Thiazole moeity, thiazo 47.9 1.6E+02 0.0055 29.5 11.6 77 712-792 116-216 (265)
500 2qf7_A Pyruvate carboxylase pr 47.3 2.5E+02 0.0087 35.1 16.2 119 715-852 706-829 (1165)
No 1
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=3.9e-73 Score=648.92 Aligned_cols=422 Identities=23% Similarity=0.429 Sum_probs=373.0
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccc-cCCCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-LSNLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~-~~~~~~ 296 (965)
.-++|||++++..... ..|+++ +||||.|||+|||+.+|+|++++||+||+|++|+++|++++.+++ ..+.++
T Consensus 32 ~~~~~h~~t~~~~~~~-~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~ 110 (473)
T 4e3q_A 32 ETYSLYGFTDMPSLHQ-RGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMS 110 (473)
T ss_dssp HHHBCCSSCCHHHHHH-HCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEE
T ss_pred hhhcCCCCCChhhhcc-CCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccC
Confidence 4467999998875421 356766 999999999999999999999999999999999999999986653 345678
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
++..+|+++|++.+|.++++|+|++|||||||.|+|+||+|+..+|.+++.+||+++++|||.|.+++++++.+ ++..+
T Consensus 111 ~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~-~~~~~ 189 (473)
T 4e3q_A 111 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKP-YNSVF 189 (473)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCG-GGGGG
T ss_pred HHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccc-ccccc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999965 45666
Q ss_pred cccCCCeeEecCCCCCCC-CCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 377 TSLLNKTYIITTPDSRNI-NKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
.+..++..+++.|..++. ..+..++.+...+.+++++.+.+. ++++||||+|| |++++|+++|+++||++|+++|++
T Consensus 190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EP-iqg~gG~~~p~~~fl~~lr~lc~~ 268 (473)
T 4e3q_A 190 GLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRK 268 (473)
T ss_dssp TCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred CCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCC-ccCCCCceeCCHHHHHHHHHHhcc
Confidence 777788888888876543 345566677778888888888654 56899999999 999999999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHH
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPL 533 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~ 533 (965)
||++||+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+... .....+.|++||+|||+
T Consensus 269 ~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpl 348 (473)
T 4e3q_A 269 YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 348 (473)
T ss_dssp TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHH
T ss_pred cceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999988642 12245789999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHH
Q psy8199 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAA 607 (965)
Q Consensus 534 ~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l 607 (965)
+|++|+++|++++++++.+++++++++|+++|+++.++|.|.+|||.|+|+++++. .+..+ .......+.+.|
T Consensus 349 a~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv-~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
T 4e3q_A 349 GCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAV-KDKASKTPFDGNLSVSERIANTC 427 (473)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEe-cCccccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999986 33221 123466788999
Q ss_pred HHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 608 ~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
+++|+++++.++.+||.||+++|+++++++++++.+++.++
T Consensus 428 ~~~Gll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 428 TDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp HHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776543
No 2
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=8e-68 Score=603.11 Aligned_cols=389 Identities=24% Similarity=0.388 Sum_probs=337.0
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KL 314 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~ 314 (965)
.|+++ +||||.|||+|||+.+|+|++++||+||+|++|+++|++++.|......+++...+|+++|++.+|. ..
T Consensus 46 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 125 (456)
T 4atq_A 46 VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHA 125 (456)
T ss_dssp CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSC
T ss_pred CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCC
Confidence 56665 9999999999999999999999999999999999999999887766677899999999999999985 47
Q ss_pred CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCC
Q psy8199 315 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRN 393 (965)
Q Consensus 315 ~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (965)
++|+|++|||||||.|||+||.+ ++|.+||+++++|||+|.+++++++.. .++..+.++.+++.++|.+....
T Consensus 126 ~~v~f~~sGsEA~e~AlklAr~~------t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~ 199 (456)
T 4atq_A 126 KRTVLFNSGAEAVENAVKVARLA------TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFR 199 (456)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGG
T ss_pred cEEEEeCChHHHHHHHHHHHhhh------hcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccc
Confidence 79999999999999999999998 589999999999999999999998865 46667788888899998876544
Q ss_pred CCC-CCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc
Q psy8199 394 INK-GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 472 (965)
Q Consensus 394 ~~~-~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G 472 (965)
... .....++....++.+++.+ .++++||||+|| |++++|.++|+++||++|+++|++||++||+|||||||||+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~e~~~--~~~~iAAvivEP-iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG 276 (456)
T 4atq_A 200 EENPEITGAEAAKRAITMIEKQI--GGDQVAAIIIEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG 276 (456)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHHT--CGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cCCCcccHHHHHHHHHHHHHHhh--cCCceEEEEecc-ccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc
Confidence 332 1222233334444444433 256899999999 999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHH
Q psy8199 473 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552 (965)
Q Consensus 473 ~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~ 552 (965)
++|+++++|+.||++|+||+++|| +|+|++++++++++.+.. ..|++||+|||++|++|+++|++++++++.+
T Consensus 277 ~~~a~e~~gv~PDivt~gK~lggg-~P~~av~~~~~i~~~~~~------~~~~~Tf~gnpla~aaala~L~~i~~~~l~~ 349 (456)
T 4atq_A 277 EWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHP------GGLGGTYGGNPVACAAALAAIDTMEQHDLNG 349 (456)
T ss_dssp SSSGGGGTTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccccccccCCCCchhhhhhcccCc-CCceeeEecHHHHhcccc------cCCCCCCCCChHHHHhhHHHHHHHhhccHHH
Confidence 999999999999999999999988 699999999999998864 4689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc-cC-----CCceeeeeceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEeec---CCEE
Q psy8199 553 RISQDMKKITKALTSL-IT-----HPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPI---GNTV 621 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l-~~-----~~~i~~v~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~~---~~~l 621 (965)
++++.+++|+++|+++ .+ ++.|.+|||.|+|+++++. .+. .+....+..+.+.|+++|+++.+. +++|
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~-~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~i 428 (456)
T 4atq_A 350 RARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELV-QPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVI 428 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEB-CTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEe-cCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEE
Confidence 9999999999999987 33 3668999999999999997 222 223445667899999999998764 4799
Q ss_pred EEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
||.||+++++++++++++++.+++.
T Consensus 429 rl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 429 RLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877653
No 3
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=1.6e-61 Score=562.35 Aligned_cols=423 Identities=25% Similarity=0.421 Sum_probs=369.8
Q ss_pred cccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP 298 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~ 298 (965)
-.+|||++++.... -..|+++ +|+||.||++||||.+|+|+++|||+||+|++|+++|++++.+++...++++.
T Consensus 20 ~~~~~~~~~~~~~~-~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~ 98 (476)
T 3i5t_A 20 DHILLPAQEMAKLG-KSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSP 98 (476)
T ss_dssp HHBCCTTEEGGGTT-TCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHH
T ss_pred cccccCcccccccc-cCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHH
Confidence 46799988765432 1246655 99999999999999999999999999999999999999987665434688999
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcc
Q psy8199 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 378 (965)
Q Consensus 299 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 378 (965)
..+|+++|++.+|.+.++|+|++||+|||+.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..+.+
T Consensus 99 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 178 (476)
T 3i5t_A 99 AARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDI 178 (476)
T ss_dssp HHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCC
Confidence 99999999999987889999999999999999999999999999999999999999999999999999998888888888
Q ss_pred cCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 379 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
..+++.+++.|..++. .+.+.+.+...++++|++++++.. +++++|++|| +++++|.++++++||++|+++|++||+
T Consensus 179 ~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep-~~~~~G~~~~~~~~L~~l~~lc~~~gi 256 (476)
T 3i5t_A 179 AQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP-ILASGGVIIPPAGYHARFKAICEKHDI 256 (476)
T ss_dssp CCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 8888889988865554 445566777778999999997543 6799999999 999999999999999999999999999
Q ss_pred eEEEeccccCCCccccccccc-ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHHHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACE-HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~-~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~ 535 (965)
+||+||||+||||+|++|+++ ++++.||++||||+++|||+|+|++++++++++.+... ...+.+.|++||++||++|
T Consensus 257 llI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~ 336 (476)
T 3i5t_A 257 LYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVAC 336 (476)
T ss_dssp EEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHH
T ss_pred EEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHH
Confidence 999999999999999988998 99999999999999999988999999999999988652 1124467899999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchh------hHHHHHHHHHHH
Q psy8199 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE------TFSKKFFVAALK 609 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~------~~~~~~~~~l~~ 609 (965)
+|++++|+.++++++.++++++++++++.|+++.++|.+..+++.|+|+++++. .+..+.. .....+.+.|++
T Consensus 337 aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (476)
T 3i5t_A 337 AAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCL-LDPTRADGTAEDKAFTLKIDERCFE 415 (476)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC-CC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEe-cCccccccccchhHHHHHHHHHHHH
Confidence 999999999988889999999999999999988778889999999999999986 2211111 135568889999
Q ss_pred cCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 610 NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 610 ~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
+||+++|.++++||+||+++++++++++++++.+++.+..+
T Consensus 416 ~Gv~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 416 LGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp TTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999887655443
No 4
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=2e-62 Score=554.98 Aligned_cols=384 Identities=17% Similarity=0.229 Sum_probs=324.8
Q ss_pred cccccccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccc
Q psy8199 216 RQALHAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 290 (965)
Q Consensus 216 ~~~Lha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~ 290 (965)
..+.+..+-+..+|..... +.|+++ +||||+|||+|||+.+|+|+++|||+||+|++|+++|++++.++
T Consensus 49 ~~a~~~~pgg~~~~~~~~~-----~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~- 122 (454)
T 4ao9_A 49 EAQARYMPGANSRSVLFYA-----PFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL- 122 (454)
T ss_dssp HHHTTTSGGGCSSGGGCCS-----SCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC-
T ss_pred HHHhhhCCCCCCCCccccC-----CCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc-
Confidence 3355555556666654322 246666 99999999999999999999999999999999999999886443
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+.++....+|+++|++.+| +.++|+|+|||||||+.|||+||.| ++|++||+|+++|||++.++++.++..
T Consensus 123 --~~~~~~~~~lae~l~~~~p-~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~ 193 (454)
T 4ao9_A 123 --TGHNLLEGRLARLICERFP-QIEQLRFTNSGTEANLMALTAALHF------TGRRKIVVFSGGYHGGVLGFGARPSPT 193 (454)
T ss_dssp --CSEESSHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEETTCBCSTTCBBSSSBCTT
T ss_pred --cCCcHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHhc------ccCCeEEEEeCCcCCccccccccccCc
Confidence 3456778899999999998 7899999999999999999999999 489999999999999998887766533
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.+ ..+...+|+ +|++++++.+++++++++|||+|| +++++|.++|+++||++|++
T Consensus 194 ~~-------~~~~~~~p~-----------------nd~~~l~~~l~~~~~~iAavIvEP-v~g~~G~~~p~~~fL~~lr~ 248 (454)
T 4ao9_A 194 TV-------PFDFLVLPY-----------------NDAQTARAQIERHGPEIAVVLVEP-MQGASGCIPGQPDFLQALRE 248 (454)
T ss_dssp SC-------CSEEEEECT-----------------TCHHHHHHHHHHTGGGEEEEEECS-EESTTTCEECCHHHHHHHHH
T ss_pred cC-------CCCcccCCC-----------------chHHHHHHHHhhcCCceEEEEecc-ccCCCCccCCchhhHHHHHH
Confidence 21 112333333 688999999998888899999999 99999999999999999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG 530 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~ 530 (965)
+|++||++||+|||+| ||+|.+|+++++|+.||++|+||+++|| +|+|++++++++++.+.. ...++.|++||++
T Consensus 249 lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~--~~~~~~h~~T~~g 323 (454)
T 4ao9_A 249 SATQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDP--RTGPLAHSGTFNN 323 (454)
T ss_dssp HHHHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCT--TTCSCCCCCTTTT
T ss_pred HHhhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhh--ccCCccccCCCCC
Confidence 9999999999999999 5999999999999999999999999999 699999999999998865 3456789999999
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc-------hhhHHHH
Q psy8199 531 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ-------IETFSKK 602 (965)
Q Consensus 531 ~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~-------~~~~~~~ 602 (965)
||++|+|++++|++++++++++++++++++|+++|+++ .+++.+..|+|.|+|+++++...+... .......
T Consensus 324 nPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~ 403 (454)
T 4ao9_A 324 NVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQL 403 (454)
T ss_dssp CHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999998 667777899999999999986222111 1223456
Q ss_pred HHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 603 ~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+...|+++||++.|.+. +.+++.+|+++||++++++.+++..
T Consensus 404 ~~~~ll~~Gv~~~p~~~---~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 404 LFFHLLNEDIYSSPRGF---VVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp HHHHHHHTTEECCTTCE---EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEcCCCC---EEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 77889999999988753 4466779999999999998876543
No 5
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.1e-61 Score=562.70 Aligned_cols=419 Identities=27% Similarity=0.448 Sum_probs=363.5
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~ 296 (965)
+-.+|||++.+..... ..|+++ +||||.|||+||||.+|+|+++|||+||+|++|+.+|++++. +++...+++
T Consensus 20 ~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~ 98 (472)
T 3hmu_A 20 AAHHLHPFSANNALGE-EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTH 98 (472)
T ss_dssp HHHEECTTEEHHHHHH-HCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEEC
T ss_pred HhhccCCccccccccc-CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCC
Confidence 4467888876543210 245555 999999999999999999999999999999999999999875 344456789
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
+...+|+++|++.+|.+.++|+|++||+|||+.|+|++++|+..+|.+++++||+++++|||++.+++++++.+.++..+
T Consensus 99 ~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~ 178 (472)
T 3hmu_A 99 VPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQS 178 (472)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhcccc
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999987777777
Q ss_pred cccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 377 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
. ..+++.++|.|..++.....+.+.+...++++|++++++. ++++++|++|| +++++|.++|+++||++|+++|++|
T Consensus 179 ~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep-v~~~gG~~~~~~~~l~~l~~l~~~~ 256 (472)
T 3hmu_A 179 G-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKY 256 (472)
T ss_dssp C-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTCBCCCTTHHHHHHHHHHHT
T ss_pred C-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcC-ccCCCCcccCCHHHHHHHHHHHHHc
Confidence 7 7778888887753331111455667777899999999754 36799999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~ 535 (965)
|++||+||||+||||+|++|+++++++.||++||||+|+||++|+|++++++++++.+.. ..+.|++||++||++|
T Consensus 257 gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~----~~~~~~~t~~~np~a~ 332 (472)
T 3hmu_A 257 DILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK----DEFNHGYTYSGHPVAA 332 (472)
T ss_dssp TCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT----SCBCCCCTTTTCHHHH
T ss_pred CCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc----CCccccCCCCCCHHHH
Confidence 999999999999999999999999999999999999999998999999999999998832 3467899999999999
Q ss_pred HHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch-------hhHHHHHHHHH
Q psy8199 536 CAALATLEIFNKDNILQRIS-QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI-------ETFSKKFFVAA 607 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~-------~~~~~~~~~~l 607 (965)
+|++++|+.++++++.++++ ++++++++.|+++.++|.+..+++.|+|+++++. .+..+. ...+..+.+.|
T Consensus 333 aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~l 411 (472)
T 3hmu_A 333 AVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALT-PNKASRAKFASEPGTIGYICRERC 411 (472)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEEC-SCGGGTCCBSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEe-cCccccccccchhHHHHHHHHHHH
Confidence 99999999998888999999 9999999999988778889999999999999986 222111 22355788899
Q ss_pred HHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccHH
Q psy8199 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649 (965)
Q Consensus 608 ~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~ 649 (965)
+++||++++.++++||+||+++++++++++++++.+++.+..
T Consensus 412 ~~~Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 412 FANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHTTBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999987765543
No 6
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=5.6e-62 Score=592.89 Aligned_cols=422 Identities=24% Similarity=0.433 Sum_probs=342.7
Q ss_pred ccccccccCcccccccccCCCce-------eEEEecCCc----ccccccccchhccCCCC-CHHHHHHHHHHHhhccccc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-------SKLITFSGK----RYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM 290 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-------~~~~d~dG~----~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~ 290 (965)
.-++|||++++..+.. ..|+++ +||||.||| +|||++||+|++++||+ ||+|++|+++|++++.|++
T Consensus 339 ~~~~whp~t~~~~~~~-~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~ 417 (831)
T 4a0g_A 339 GEVFWWPFTQHKLVHQ-ETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVM 417 (831)
T ss_dssp HHHBCCTTCCGGGCCG-GGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhhccCCccCcccccC-CCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccc
Confidence 4578999998875320 135555 599999999 99999999999999999 9999999999999988876
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHHHH-HHHHHhcCCC--------CceEEEEEcCCccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMS-FHYWYNKGFL--------NKKKFICLQNSYHGET 360 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~~a-~~~~~~~g~~--------~~~~vi~~~~~yHg~~ 360 (965)
+.++++++..+|+++|++.+|.+ +++|+|++|||||||.|||+| +.|+..+|.+ +|.+||+++++|||.|
T Consensus 418 ~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T 497 (831)
T 4a0g_A 418 FPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT 497 (831)
T ss_dssp CTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSS
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCc
Confidence 66788999999999999999865 789999999999999999999 6788777753 5889999999999999
Q ss_pred cccccccCCcCccch--------hcccC--------CCeeEecCCCCCCCCCC---------------CChhHHHHHHHH
Q psy8199 361 LGALAVTNIQSFKEI--------YTSLL--------NKTYIITTPDSRNINKG---------------NSANEIARCAIF 409 (965)
Q Consensus 361 ~~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~---------------~~~~~~~~~d~~ 409 (965)
++++++++...++.. +.++. +++.+++.|+.+..... .....+...+++
T Consensus 498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (831)
T 4a0g_A 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA 577 (831)
T ss_dssp HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence 999999986655431 11111 23445566644332110 011123445678
Q ss_pred HHHHHHHh-----CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 410 DLEILLKK-----NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 410 ~le~~l~~-----~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
+|++.|++ .++++++||+||++++++|++++|++||++|+++|++||++||+|||||||||+|++|+++++|+.|
T Consensus 578 ~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 657 (831)
T 4a0g_A 578 YLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKP 657 (831)
T ss_dssp HHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCC
T ss_pred HHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCC
Confidence 88888863 3578999999993399999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK- 563 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~- 563 (965)
|++||||+|||||+|+|++++++++++.+..+.....+.|++||++||++|++|+++|++++++++.++++++++++++
T Consensus 658 DiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~ 737 (831)
T 4a0g_A 658 DIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL 737 (831)
T ss_dssp SEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCC
T ss_pred cEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999998999999999999999876333345789999999999999999999999888888888776666542
Q ss_pred ---HH-HcccCCCceeeeeceeEEEEEEEeecCccc---hhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHH
Q psy8199 564 ---AL-TSLITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 564 ---~L-~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~ 636 (965)
.+ +.+.++|.+..+++.|+|+++++. .+... ....+..+.+.|+++||+++|.++.+||+||+.+++++|++
T Consensus 738 l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~-~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 738 WDEELVQQISSHSAVQRVVVIGTLFALELK-ADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp SCHHHHHHHHHSTTEEEEEEETTEEEEEEC----------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHhhCCCceeEeecccEEEEEEe-cCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHH
Confidence 23 334567889999999999999996 22110 11235578889999999999999999999999999999999
Q ss_pred HHHhhhcccc
Q psy8199 637 MTSAIFQTFN 646 (965)
Q Consensus 637 ~~~~l~~~~~ 646 (965)
+++++.+++.
T Consensus 817 ~~~~l~~~l~ 826 (831)
T 4a0g_A 817 LLTKLYKRLG 826 (831)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 7
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=7.6e-59 Score=537.04 Aligned_cols=404 Identities=32% Similarity=0.570 Sum_probs=348.8
Q ss_pred ccccccccCcc-cccccccCCCce-----eEEEec-CCc--ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC
Q psy8199 223 KLGLIHPKNNL-KLKWRINLPDDI-----SKLITF-SGK--RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN 293 (965)
Q Consensus 223 ~l~f~~p~~~~-~~~~~~~~p~~~-----~~~~d~-dG~--~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~ 293 (965)
.-.+|||++.. ... ..|+++ +|+||. ||| +||||.+|+|+++|||+||+|++|+.+|++++.+++...
T Consensus 38 ~~~~~~~~~~~~~~~---~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~ 114 (457)
T 3tfu_A 38 GAHLWHPYSSIGREA---VSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGG 114 (457)
T ss_dssp HHHBCCTTCCSSCCS---SCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSS
T ss_pred HhhcCcccccccccC---CCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccc
Confidence 44678888765 222 245555 999999 999 999999999999999999999999999999887665556
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccC-CcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~-~~~~ 372 (965)
++++...+|+++|++.+|.+.++|+|++||+||++.|+++++++++.+|.+++++||+++++|||++.+++++++ ...+
T Consensus 115 ~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 194 (457)
T 3tfu_A 115 LTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGM 194 (457)
T ss_dssp EECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC---
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccc
Confidence 789999999999999998778899999999999999999999999999988999999999999999999999965 5567
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
+..+.++..+..++|.|.... ..+|+++|+++++++++++++|++||+++|++|.++++++|+++|+++|
T Consensus 195 ~~~~~~~~~~~~~~~~p~~~~----------~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~ 264 (457)
T 3tfu_A 195 HSLWTDVLAAQVFAPQVPRDY----------DPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDIC 264 (457)
T ss_dssp -------CCCCEEECCCCSSC----------CHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHH
T ss_pred cccccCCCCCceEecCCCccc----------CHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHH
Confidence 777777778888888775332 2379999999998655689999999977999999999999999999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCH
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 532 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~ 532 (965)
++||++||+||||+||||+|.+++++++++.||++||||+|+||++|+|++++++++++.+... ..+.+.|++||++||
T Consensus 265 ~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~-~~~~~~~~~t~~~n~ 343 (457)
T 3tfu_A 265 RRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG-AAGALMHGPTFMANP 343 (457)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS-SSCSCCCCCTTTTCH
T ss_pred HHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhcc-CCCceeEecCCCcCH
Confidence 9999999999999999999999999999999999999999999988999999999999988631 123467899999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
++|++++++|+.++++++.+++++++++++++|+++.+++.+..+++.|+|+++++. .+ . .+..+.+.|+++||
T Consensus 344 ~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~-~~-~----~~~~~~~~l~~~Gv 417 (457)
T 3tfu_A 344 LACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECD-RP-V----DLAVATPAALDRGV 417 (457)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEES-SC-C----CHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEEC-Cc-c----cHHHHHHHHHHCCe
Confidence 999999999999988889999999999999999998778888999999999999886 21 1 14568889999999
Q ss_pred EEeecCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 613 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 613 ~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+++|.++++||+||+++++++++++++++.+++.
T Consensus 418 ~v~~~~~~lRi~p~~~~t~eei~~~l~~L~~~l~ 451 (457)
T 3tfu_A 418 WLRPFRNLVYAMPPYICTPAEITQITSAMVEVAR 451 (457)
T ss_dssp ECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876543
No 8
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=3.4e-58 Score=534.12 Aligned_cols=421 Identities=24% Similarity=0.416 Sum_probs=350.5
Q ss_pred cccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCC
Q psy8199 222 YKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLT 295 (965)
Q Consensus 222 ~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~ 295 (965)
..-.+|||++....... ..|+++ +||||.||++||||.+++|+++|||+||+|++|+.+|++++. +++...++
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~ 92 (459)
T 4a6r_A 14 DAAHHLHPFTDTASLNQ-AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTT 92 (459)
T ss_dssp ---------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSC
T ss_pred hhhhccCCccccccccc-cCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccC
Confidence 34567899887654320 235555 999999999999999999999999999999999999998865 34445688
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
++...+|+++|++.+|.+.++|+|++||+||++.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..
T Consensus 93 ~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 172 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQ 172 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC--
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccc
Confidence 99999999999999987889999999999999999999999998999899999999999999999999999998888888
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
+.+...++.+++.|..+......+.+.+...++++|++++.+. ++++++|++|| +++++|.++++++||++|+++|++
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 173 GDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEP-IQGAGGVIVPPATYWPEIERICRK 251 (459)
T ss_dssp -CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred cCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-ccCCCCcccCCHHHHHHHHHHHHH
Confidence 8888888888887753331111455667777899999999754 35799999999 999999999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
||++||+||||+||||+|++++++++++.||++||||+|+||++|+|++++++++++.+... ..+.+++||++||++
T Consensus 252 ~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~---~~~~~~~t~~~~~~~ 328 (459)
T 4a6r_A 252 YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG---GDFNHGFTYSGHPVC 328 (459)
T ss_dssp TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH---CTTHHHHHHCSCHHH
T ss_pred cCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcC---CCcccCCCCCCCHHH
Confidence 99999999999999999998899999999999999999999989999999999999988631 235688999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHH-HHHHHHHHHH-HcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRIS-QDMKKITKAL-TSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVA 606 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~-~~~~~l~~~L-~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~ 606 (965)
|++++++|+.++++++.++++ ++++++++.| +.+.+++.+..+++.|+|+++++. .+..+ .......+.+.
T Consensus 329 ~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
T 4a6r_A 329 AAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLV-KNKAKRELFPDFGEIGTLCRDI 407 (459)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEEC-SBTTTTBCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEe-cCccccccccchHHHHHHHHHH
Confidence 999999999988888999999 9999999999 777778889999999999999986 22111 12235578889
Q ss_pred HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 607 l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
|+++||+++|.++++||+||+++++++++++++++.+++.+.
T Consensus 408 l~~~Gv~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 408 FFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp HHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999999999998776544
No 9
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=1.9e-57 Score=527.91 Aligned_cols=422 Identities=20% Similarity=0.346 Sum_probs=363.4
Q ss_pred ccccccccCcccccccc-cCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCC
Q psy8199 223 KLGLIHPKNNLKLKWRI-NLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLT 295 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~-~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~ 295 (965)
.-++|||+++....... +.|+++ +||||.||++||||.+|+|+++|||+||+|++|+.+|++++. ++...+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~ 93 (460)
T 3gju_A 14 RDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHG 93 (460)
T ss_dssp HHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCC
T ss_pred hcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccC
Confidence 45678998876542100 123555 999999999999999999999999999999999999998864 34445678
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
++...+|+++|++.++.+.++|+|++||+||++.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..
T Consensus 94 ~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 173 (460)
T 3gju_A 94 TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNA 173 (460)
T ss_dssp CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTT
T ss_pred CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccc
Confidence 89999999999999887888999999999999999999999999999999999999999999999999999998888888
Q ss_pred hcccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 376 YTSLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
+.+...++.++|.|..++.. .+.+.+.+...++++|++++++. ++++++|++|| +++++|.++++++|+++|+++|+
T Consensus 174 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep-~~~~~G~~~~~~~~l~~l~~l~~ 252 (460)
T 3gju_A 174 FDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLK 252 (460)
T ss_dssp TTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHH
T ss_pred cCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCCccCCHHHHHHHHHHHH
Confidence 88888888899887655433 35566777778899999999753 35799999999 99999999999999999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCH
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNP 532 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~ 532 (965)
+||++||+||||+||||+|++++++++++.||++||||+|+||++|+|++++++++++.+... .....+.|++||++||
T Consensus 253 ~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~ 332 (460)
T 3gju_A 253 KYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHP 332 (460)
T ss_dssp HTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCH
T ss_pred HcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCH
Confidence 999999999999999999998999999999999999999999988999999999999988531 0113467899999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHH
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFV 605 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~ 605 (965)
++|++++++|+.++++++.++++++++++++.|.+. .+++.+..+++.|+|+++++. .+..+ ....+..+.+
T Consensus 333 ~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 411 (460)
T 3gju_A 333 ICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFV-ADKDDRVFFDASQKIGPQVAT 411 (460)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEc-cCccccccccchHHHHHHHHH
Confidence 999999999999888889999999999999999654 677888999999999999986 22111 1123557888
Q ss_pred HHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 606 AALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 606 ~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.|+++||+++|.+ +++||+||+++++++++++++++.+++.
T Consensus 412 ~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 454 (460)
T 3gju_A 412 ALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK 454 (460)
T ss_dssp HHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999976 8999999999999999999999887654
No 10
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=3.1e-57 Score=524.61 Aligned_cols=419 Identities=36% Similarity=0.651 Sum_probs=339.6
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
.-.+|||++++.... ..|+.+ +||||.||++|||+.+++|++++||+||+|++|+.+|++++.+++...++++
T Consensus 10 ~~~~~~~~~~~~~~~--~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~ 87 (448)
T 3dod_A 10 KKHLWLPFTQMKDYD--ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNV 87 (448)
T ss_dssp HHHBCCTTCCHHHHH--HSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEH
T ss_pred hhccccccccccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCH
Confidence 346788887654432 246655 9999999999999999999999999999999999999998766555678889
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
...+++++|++.+|.+.++|+|++||+||++.|+++++.++...|.+++++||+++++|||++.+++++++.+.++..+.
T Consensus 88 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 167 (448)
T 3dod_A 88 PATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYG 167 (448)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccccccc
Confidence 99999999999998778899999999999999999999987777777799999999999999999999999888888888
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc-cCCCcccCChHHHHHHHHHHHhcC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ-CAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~-~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
+..+++.++|.|..++.+ +.....+..+|+++|++++++.++++++|++|| ++ +++|.++++++|+++|+++|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~~G~~~~~~~~l~~l~~l~~~~~ 245 (448)
T 3dod_A 168 PLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEEHHEEIAALSIES-MVQGASGMIVMPEGYLAGVRELCTTYD 245 (448)
T ss_dssp -----CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEES-SEESTTTCEECCTTHHHHHHHHHHHTT
T ss_pred CCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeC-cccCCCCeecCCHHHHHHHHHHHHHhC
Confidence 888888899988877766 667778899999999999985556899999999 88 999999999999999999999999
Q ss_pred CeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHHHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~ 535 (965)
++||+||||+||||+|.+++++++++.||++||||++++|++|+|++++++++++.+... .....+.+++||++||++|
T Consensus 246 ~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 325 (448)
T 3dod_A 246 VLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325 (448)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHH
T ss_pred CEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHH
Confidence 999999999999999999999999999999999999999856999999999999988541 0123467889999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHHHH
Q psy8199 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALK 609 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l~~ 609 (965)
++++++|+.++++++.++++++++++++.|+++..++.+..+++.|+|+++++. .+..+. ...+..+.+.|++
T Consensus 326 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (448)
T 3dod_A 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELV-RSKETKEPYPADRRIGYKVSLKMRE 404 (448)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEc-cCcccccccchhhHHHHHHHHHHHH
Confidence 999999999888889999999999999999887677888899999999999986 221111 0114568889999
Q ss_pred cCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 610 NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 610 ~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+||++.|.++++||+||+++++++++++++++.+.+.
T Consensus 405 ~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 441 (448)
T 3dod_A 405 LGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIH 441 (448)
T ss_dssp TTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999889999999999999999999999887654
No 11
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.9e-55 Score=510.76 Aligned_cols=395 Identities=29% Similarity=0.479 Sum_probs=346.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.||++||||.+|+|+++|||+||+|++|+.++++++.+ +...++++...+++++|++.++.+.+ |+|++||+|
T Consensus 41 ~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggse 118 (452)
T 3n5m_A 41 CWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-FPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSE 118 (452)
T ss_dssp TEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-CCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHH
T ss_pred CEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-cccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHH
Confidence 9999999999999999999999999999999999999998765 44568889999999999999986666 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..+.+..+++.+++.|..+..+.+...+.+..
T Consensus 119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (452)
T 3n5m_A 119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV 198 (452)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence 99999999999877777778999999999999999999999998887777888888888999887766665444455666
Q ss_pred HHHHHHHHHHH-hCCCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 406 CAIFDLEILLK-KNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 406 ~d~~~le~~l~-~~~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.++++|+++++ .+++++++|++|| + +| +|.++|+++|+++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 199 ~~~~~le~~l~~~~~~~~~~vi~ep-~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~ 276 (452)
T 3n5m_A 199 ECVKEVDRVMTWELSETIAAFIMEP-IITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVK 276 (452)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECS-SBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEcc-ccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCC
Confidence 77999999997 3346799999999 7 89 9999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||++++||+|+|++++++++++.+......+.+.+++||++||++|++++++|+.++++++.++++++++++++
T Consensus 277 ~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 356 (452)
T 3n5m_A 277 PDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLE 356 (452)
T ss_dssp CSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999987899999999999998853111245678999999999999999999998888899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccch----hhHHHHHHHHHHHcCcEEeecC-------CEEEEeCCcccCH
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI----ETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNK 631 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~----~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~~~~t~ 631 (965)
.|+++ .+++.+..+++.|+|+++++. .+..+. ......+.+.|+++||++.|.+ +++||+||+++++
T Consensus 357 ~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~ 435 (452)
T 3n5m_A 357 QLKEEIGEHPLVGDIRGKGLLVGIELV-NDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISS 435 (452)
T ss_dssp HHHHHHTTCTTEEEEEESSSCEEEEEE-EETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCH
T ss_pred HHHHHHhcCCCeEEEEEEEEEEEEEEe-cCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCH
Confidence 99887 677888899999999999985 221111 1224468889999999999864 7999999999999
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+++
T Consensus 436 e~i~~~l~~l~~~l 449 (452)
T 3n5m_A 436 EEIAFVIGTLKTAM 449 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 12
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.5e-54 Score=501.52 Aligned_cols=385 Identities=26% Similarity=0.411 Sum_probs=336.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.||++||||.+++|+++|||+||+|++|+.+|++++.+++...++++...+|+++|++.+|.. .++|+|++||+
T Consensus 56 ~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 135 (453)
T 4ffc_A 56 GVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGA 135 (453)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHH
Confidence 99999999999999999999999999999999999999988776656788999999999999999754 57999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||++.|+++++.+ +++++||+++++|||++.+++++++.. .++..+.++..++.++|.|..++.+.+.+..+.
T Consensus 136 eA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (453)
T 4ffc_A 136 EAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA 209 (453)
T ss_dssp HHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHH
T ss_pred HHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHH
Confidence 9999999999987 478999999999999999999999865 677778888888889998866555555554444
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
-..++++|++.+. ++++++|++|| +++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 210 ~~~~~~~l~~~i~--~~~~aavi~ep-~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~ 286 (453)
T 4ffc_A 210 ARRAISRIETQIG--AQSLAAIIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIV 286 (453)
T ss_dssp HHHHHHHHHHHTC--GGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHHhcC--CCCEEEEEEcC-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCC
Confidence 4455677776663 45799999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.++++++++++++
T Consensus 287 pdi~t~sK~~~~G-~~~G~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 359 (453)
T 4ffc_A 287 PDIVTMAKGIAGG-MPLSAVTGRAELMDAVYA------GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTS 359 (453)
T ss_dssp CSEEEECGGGGTT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchHhhhhhhcCC-cCeEEEEECHHHHhhhcc------cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999998 899999999999988764 358899999999999999999998888899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecC-ccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHH
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~ 638 (965)
.|+++ .+++.+..+++.|+|+++++.... ..+.......+.+.|+++||++.|.+ +.+||+||++++++++++++
T Consensus 360 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l 439 (453)
T 4ffc_A 360 RLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGI 439 (453)
T ss_dssp HHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 99887 677888899999999999986210 01122345678899999999999854 79999999999999999999
Q ss_pred Hhhhcccc
Q psy8199 639 SAIFQTFN 646 (965)
Q Consensus 639 ~~l~~~~~ 646 (965)
+++.+++.
T Consensus 440 ~~l~~~l~ 447 (453)
T 4ffc_A 440 TALSDIIR 447 (453)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876553
No 13
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=2.2e-54 Score=500.27 Aligned_cols=386 Identities=26% Similarity=0.403 Sum_probs=333.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.||++||||.+++|+++|||+||+|++|+.+|++++.+++...++++...+|+++|++.+|.. .++|+|++||+
T Consensus 53 ~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 132 (451)
T 3oks_A 53 GIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGS 132 (451)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHH
T ss_pred CEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHH
Confidence 99999999999999999999999999999999999999988776656688999999999999998743 57999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCC-CCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINK-GNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 402 (965)
||++.|+++++.+ +++++||+++++|||++.+++++++.. .++..+.+...++.++|.|..++.+. +.+.+.
T Consensus 133 eA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 206 (451)
T 3oks_A 133 EAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELAT 206 (451)
T ss_dssp HHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTT
T ss_pred HHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccch
Confidence 9999999999987 478999999999999999999999864 67777888888888888874332211 222233
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc
Q psy8199 403 IARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
+...+++.+++.+++. ++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++
T Consensus 207 ~~~~~~~~~~~~l~~~~~~~~~aavi~ep-~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~ 285 (451)
T 3oks_A 207 DGELAAKRAITVIDKQIGADNLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285 (451)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred hhHHHHHHHHHHHHhhcCCCCEEEEEEcC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhc
Confidence 3445677777666542 46799999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKK 560 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~ 560 (965)
++.||++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++
T Consensus 286 ~~~pdi~t~sK~l~~G-~~iG~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 358 (451)
T 3oks_A 286 GIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHV------SGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKI 358 (451)
T ss_dssp TCCCSEEEECGGGGTT-SSCEEEEEEHHHHTCSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCeeeehhhhhCC-cceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999998 899999999999988764 358899999999999999999998888899999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeecC-ccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHH
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~ 635 (965)
+++.|+++ .+++.+..+++.|+|+++++.... ..+.......+.+.|+++||++.|.+ +.+||+||+++++++++
T Consensus 359 l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~ 438 (451)
T 3oks_A 359 MKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLN 438 (451)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHH
Confidence 99999887 677888899999999999986210 01122345578889999999999854 79999999999999999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+++
T Consensus 439 ~~l~~l~~~l 448 (451)
T 3oks_A 439 EGLDVLEEVL 448 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 14
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=4e-52 Score=479.80 Aligned_cols=387 Identities=25% Similarity=0.421 Sum_probs=316.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|+++|||+||+|++|+.++++...+++...++++...++++++++.++.+.++|+|++||+|
T Consensus 21 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 100 (430)
T 3i4j_A 21 VFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSE 100 (430)
T ss_dssp TEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHH
T ss_pred CEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHH
Confidence 99999999999999999999999999999999999999887666555788999999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCC--CeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN--KTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|++++++++..+|.+++++||+++++|||++..++++++...++..+.++.+ ++.++|.++.++.
T Consensus 101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 171 (430)
T 3i4j_A 101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN--------- 171 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccch---------
Confidence 99999999999988888888999999999999999999998887766666666666 7777777653321
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-
Q psy8199 404 ARCAIFDLEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA- 480 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~-~~~aaii~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~- 480 (965)
...|+++|++++++.. +++++|++|| +++ ++|.++++++++++|+++|++||++||+||||+||||+|.+++++++
T Consensus 172 ~~~~~~~le~~l~~~~~~~~~~vi~~p-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~ 250 (430)
T 3i4j_A 172 GAEDAEGLRALLEREGPETVAAFMAEP-VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWS 250 (430)
T ss_dssp HHHHHTHHHHHHHHHCGGGEEEEEECS-SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred hhHHHHHHHHHHHhcCCCCEEEEEEcC-cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhc
Confidence 3468899999997543 6789999999 899 99999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKK 560 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~ 560 (965)
++.||++||||++++||+|+|++++++++++.+.. ..+.+.+++||++||++|++++++|+.++++++.+++++++++
T Consensus 251 ~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~--~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 251 GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMG--GSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp TCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHH--TTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCcEEEEcccccCCccccEEEEECHHHHHHHhc--cCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999999987899999999999998875 2234678899999999999999999998878899999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch-----hhHHHHHHHHHHHcCcEEeec--------CCEEEEeCC
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI-----ETFSKKFFVAALKNELLLRPI--------GNTVYLMPP 626 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~-----~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~ 626 (965)
+++.|+++ .++|.+..+++.|+|+.+++. +.... ...+..+.+.|+++||+++|. ++++||+|+
T Consensus 329 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~ 406 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVRGTGLLLGVVLG--DLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPP 406 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHTTEECC-----------CEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEEEEEec--cccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECC
Confidence 99999887 477888899999999999885 21111 112356888999999999986 578999999
Q ss_pred cccCHHHHHHHHHhhhcccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.+++++++++++++.+.+.
T Consensus 407 ~~~t~e~i~~~l~~l~~~l~ 426 (430)
T 3i4j_A 407 LSITAAEVDGLLALLAGALE 426 (430)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999876653
No 15
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=1e-49 Score=462.23 Aligned_cols=418 Identities=25% Similarity=0.402 Sum_probs=342.7
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC-CCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-NLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~-~~~~ 296 (965)
.-.+|||++...... ..|+.+ +|+||.||++|||+.+++|++++||+||+|++|+.+++++.. ++.. .+.+
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~~~ 92 (449)
T 3a8u_X 16 LDAHWMPYTANRNFL--RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQYGH 92 (449)
T ss_dssp GGGSCCTTSCHHHHH--HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSCCC
T ss_pred hcccccccccccccc--CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-CccccccCC
Confidence 345788887764321 145555 999999999999999999999999999999999999998754 2222 6778
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
+...++++++++.++.+.++|+|++||++|++.|+++++.++..+|.+++++||+++++|||++..++..++.+.++..+
T Consensus 93 ~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 172 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLF 172 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcccc
Confidence 88999999999999877889999999999999999999988878888788999999999999998888887765555556
Q ss_pred cccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 377 TSLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
.+...++..++.|..+... .+.+.+.+...++++|++++++.+ +++++|++|| +++++|.+.++++|+++|+++|++
T Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~ 251 (449)
T 3a8u_X 173 GQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEP-LAGSAGVLVPPEGYLKRNREICNQ 251 (449)
T ss_dssp CCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred CCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHH
Confidence 6666677777766432211 111223345567899999997543 5789999999 888899999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC---CcccccccCCCCCC
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN---NINIFLHSHSYSGN 531 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~---~~~~~~~~~t~~~~ 531 (965)
||++||+||||+||||+|.+++++++++.||+++|||++++|++|+|++++++++++.+.... ....+.+++|+++|
T Consensus 252 ~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~ 331 (449)
T 3a8u_X 252 HNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331 (449)
T ss_dssp HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTC
T ss_pred hCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCccc
Confidence 999999999999999999878888889999999999999998789999999999998886521 11234577899999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 532 ~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
+++++++.++|+.++++++.++++++++++++.|+++..++.+..+++.|+|+++++. .+..........+.+.|.++|
T Consensus 332 ~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~l~~~G 410 (449)
T 3a8u_X 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA-PRDGDAIVRPFEAGMALWKAG 410 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC-CBTTBSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEe-cCcccccccHHHHHHHHHHCC
Confidence 9999999999999887789999999999999999887556777778899999999885 211111001225778888999
Q ss_pred cEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++++.++++||+||+.+++++++++++++.+++
T Consensus 411 v~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 411 FYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 9999988999999999999999999999987654
No 16
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=1.8e-49 Score=456.52 Aligned_cols=366 Identities=26% Similarity=0.397 Sum_probs=296.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+|+++++|||+||+|++|+.+|+++..+++ ..++++...+++++|++.++ .++|+|++||+|
T Consensus 57 ~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGse 133 (433)
T 1z7d_A 57 VFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS-RAFFSVPLGICERYLTNLLG--YDKVLMMNTGAE 133 (433)
T ss_dssp TEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSEEHHHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCcc-CCcCCHHHHHHHHHHHhhcC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 34678889999999999984 789999999999
Q ss_pred HHHHHHHHHHHHHH-hcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWY-NKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~-~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.|+. .+|. +++++||+++++|||++..++++++.+.++..+.+...++..+|.
T Consensus 134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--------------- 198 (433)
T 1z7d_A 134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY--------------- 198 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT---------------
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC---------------
Confidence 99999999987532 2232 356899999999999998888887755555555555556666654
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ .+++++|++|| +++++|.++++++++++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 199 --~d~~~le~~l~--~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~ 273 (433)
T 1z7d_A 199 --DDLEALEEELK--DPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVK 273 (433)
T ss_dssp --TCHHHHHHHHT--STTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --CCHHHHHHHhC--CCCEEEEEEEC-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCC
Confidence 36889999985 35689999999 89999999899999999999999999999999999999999998888999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||++++|++|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.++++++++++++
T Consensus 274 ~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 347 (433)
T 1z7d_A 274 PDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 347 (433)
T ss_dssp CSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEECccccCCCCCeEEEEECHHHHhhhcc------ccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999886899999999999887754 247899999999999999999998877899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+|+++ ..++.+..+++.|+|+++++. .+. .....+.+.|.++||++.|. ++++|++||+.+++++++++++++
T Consensus 348 ~L~~l~~~~~~~~~~~~~g~~~~i~~~-~~~----~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l 422 (433)
T 1z7d_A 348 NLKRELKDSKIVRDVRGKGLLCAIEFK-NEL----VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 422 (433)
T ss_dssp HHHHHHTTCTTEEEEEEETTEEEEEEC-TTT----CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEeeeeEEEEEEc-cCh----hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHH
Confidence 99887 366777788999999999885 210 11446888899999999986 479999999999999999999998
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+++
T Consensus 423 ~~~l 426 (433)
T 1z7d_A 423 VKTV 426 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 17
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=2.6e-49 Score=455.88 Aligned_cols=366 Identities=28% Similarity=0.430 Sum_probs=313.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+|+++.+|||+||+|++|+.+++++..+++ ..++++...+++++++++++ .++|+|++||+|
T Consensus 68 ~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGse 144 (439)
T 2oat_A 68 IYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTS-RAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVE 144 (439)
T ss_dssp TEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSEESSHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 24567889999999999984 789999999999
Q ss_pred HHHHHHHHHHHHHH-hcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWY-NKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~-~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.|+. .+|. +++++||+++++|||++..++++++.+.++..+.++..++..+|.
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--------------- 209 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--------------- 209 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS---------------
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC---------------
Confidence 99999999987642 2232 355899999999999998888887755444555566566666665
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ .+++++|++|| +++++|.+.++++++++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 210 --~d~~~le~~l~--~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~ 284 (439)
T 2oat_A 210 --NDLPALERALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284 (439)
T ss_dssp --SCHHHHHHHTT--STTEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --CCHHHHHHHhC--CCCEEEEEEEC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCC
Confidence 36889998885 35689999999 89999999999999999999999999999999999999999998888999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+++||++|+|++++++++++.+.. ..+++||++||++|+++.++|+.++++++.++++++++++++
T Consensus 285 ~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 358 (439)
T 2oat_A 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358 (439)
T ss_dssp CSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CcEEEecccccCCCCCeEEEEECHHHHhccCC------CCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999986899999999999887754 347889999999999999999998877899999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++ .++.+..+++.|+|+++++. .+.. .....+.+.|.++||++.|. ++++||+||+.+++++++++++++.
T Consensus 359 ~L~~l-~~~~~~~~~~~g~~~~v~l~-~~~~---~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 433 (439)
T 2oat_A 359 ELMKL-PSDVVTAVRGKGLLNAIVIK-ETKD---WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIIN 433 (439)
T ss_dssp HHTTS-CTTTEEEEEEETTEEEEEEC-CCSS---CCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHh-cCCCcEEEEeeeeEEEEEEe-cCcc---HHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHH
Confidence 99887 45666678999999999885 2110 11346888899999999986 4799999999999999999999887
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+++
T Consensus 434 ~~l 436 (439)
T 2oat_A 434 KTI 436 (439)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 18
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=5.5e-49 Score=454.22 Aligned_cols=367 Identities=19% Similarity=0.257 Sum_probs=305.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|+++|||+||+|++|+.+|+++.. ..+++++...+|++++++.++ +.++|+|++||||
T Consensus 47 ~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGse 122 (434)
T 3l44_A 47 AYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV---LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTE 122 (434)
T ss_dssp TEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS---CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHH
T ss_pred CEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHH
Confidence 999999999999999999999999999999999999998752 235788999999999999998 7899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh-------cccCCCeeEecCCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY-------TSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
|++.|+++++.+ +++++||+++++|||++..++..++........ .+....+..+|.
T Consensus 123 a~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 186 (434)
T 3l44_A 123 AVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF---------- 186 (434)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT----------
T ss_pred HHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc----------
Confidence 999999999887 478899999999999999988887743211100 000112333332
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
+|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+|| |+|.+++++
T Consensus 187 -------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~ 257 (434)
T 3l44_A 187 -------NNVETLKEALDKWGHEVAAILVEP-IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQD 257 (434)
T ss_dssp -------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHH
T ss_pred -------ccHHHHHHHHHhCCCCEEEEEEcC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHH
Confidence 478999999976556899999999 99999999999999999999999999999999999999 999988899
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
++++.||++||||++++| +|+|++++++++++.+.. ...+.+++||++||++|++++++|+.++++++.+++++++
T Consensus 258 ~~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~---~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~ 333 (434)
T 3l44_A 258 LLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAP---LGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELG 333 (434)
T ss_dssp HHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred HcCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhcc---CCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999988 899999999999988764 1235688999999999999999999988888999999999
Q ss_pred HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc-------chhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCccc
Q psy8199 559 KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-------QIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~-------~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~ 629 (965)
+++++.|+++ ..++.+..+++.|+|+.+++...... +.......+.+.|+++||++++.+ +.+|++ +++
T Consensus 334 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~ 411 (434)
T 3l44_A 334 ATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEH 411 (434)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--ccc
Confidence 9999999887 44566678899999999998511100 011234568888999999999875 578874 899
Q ss_pred CHHHHHHHHHhhhccccc
Q psy8199 630 NKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~~ 647 (965)
++++++++++++.+.+.+
T Consensus 412 t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 412 TKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 19
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.8e-49 Score=460.48 Aligned_cols=378 Identities=22% Similarity=0.317 Sum_probs=299.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccC--CCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLS--NLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~--~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+||||.|||+||||.+|+|+++|||+||+|++|+.+|+... .+.+.. ....+...+++++|++.++.+.++|+|++
T Consensus 55 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~ 134 (472)
T 1ohv_A 55 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMA 134 (472)
T ss_dssp TEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEES
T ss_pred CEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence 89999999999999999999999999999999999987643 222111 12356677788878888876789999999
Q ss_pred ChhHHHHHHHHHHHHHHHh--cC----------------CCC--ceEEEEEcCCccCCccccccccCCcCccchhcccCC
Q psy8199 322 DGASAVEVALKMSFHYWYN--KG----------------FLN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN 381 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~--~g----------------~~~--~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~ 381 (965)
||+|||+.|+|+++.|++. +| .++ +++||+++++|||++.+++++++...++....+. .
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~-~ 213 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS-F 213 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCC-C
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCC-C
Confidence 9999999999999987642 22 134 5899999999999999999998854432222222 2
Q ss_pred CeeEecCCCCCCCCCCCC--h-hHHHHHHHHHHHHHHHhCCC---cEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 382 KTYIITTPDSRNINKGNS--A-NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~--~-~~~~~~d~~~le~~l~~~~~---~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
++.+++.|...... ... . +.+...|+++|+++|+++.+ ++++|++|| +++++|.++|+++|+++|+++|++|
T Consensus 214 ~~~~~~~p~~~~~~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~-v~~~~G~~~~~~~~l~~l~~l~~~~ 291 (472)
T 1ohv_A 214 DWPIAPFPRLKYPL-EEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKH 291 (472)
T ss_dssp CCCEECCCCCCSSG-GGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS-SBCTTTCBCCCHHHHHHHHHHHHHT
T ss_pred CCcccCCCcccCcc-ccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcC-CcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 33445554321110 000 0 12334589999999975322 799999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCC--cceeeeccc-cCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKG-ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 532 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~--pDivt~sK~-l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~ 532 (965)
|++||+||||+||||+|.+++++++|+. ||++||||+ ++||+ + + ++++. .+ ..+.+++||++||
T Consensus 292 g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-~----~-~~~~~-~~------~~~~~~~T~~~~~ 358 (472)
T 1ohv_A 292 GCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-F----H-KEEFR-PN------APYRIFNTWLGDP 358 (472)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-E----E-CGGGS-CS------SSSSSCCSSSSCH
T ss_pred CCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-c----C-chhhc-cc------ccccccCccCccH
Confidence 9999999999999999998899999987 999999999 78763 3 2 55542 11 2346789999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 610 (965)
++|++++++|+.+.++++.+++++++++|+++|+++ .++|. +..+++.|+|+++++. + ......+.+.|+++
T Consensus 359 ~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~--~----~~~~~~~~~~l~~~ 432 (472)
T 1ohv_A 359 SKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP--D----ESIRNKLISIARNK 432 (472)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS--S----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC--C----hhHHHHHHHHHHHC
Confidence 999999999999887889999999999999999887 45673 7788999999998764 2 12245688889999
Q ss_pred CcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 611 ELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 611 Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||++.|.+ +++||+||+.+++++++++++++.+.+
T Consensus 433 Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 433 GVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp TEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999875 799999999999999999999987654
No 20
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=7.7e-53 Score=480.93 Aligned_cols=362 Identities=19% Similarity=0.252 Sum_probs=302.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+||||.+++|+++|||+||+|++|+.+|++++.. .+++++...+|+++|++++| +.++|+|++||+|
T Consensus 92 ~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGse 167 (465)
T 2yky_A 92 SRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTE 167 (465)
Confidence 8999999999999999999999999999999999999988422 35688999999999999997 7899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|++++|.+ +++++||+++++|||++.+++ ++ +. .. ..... .++ +.+
T Consensus 168 A~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~--sg-~~-~~---g~~~~--~~~---------------~~~ 217 (465)
T 2yky_A 168 ANLMALATATAI------TGRKTVLAFDGGYHGGLLNFA--SG-HA-PT---NAPYH--VVL---------------GVY 217 (465)
Confidence 999999999876 588999999999999998877 32 10 00 00001 111 223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|+++++++++++++|++|| +++++|.++++++|+++|+++|++||++||+||||+ | |+|.+++++++|+.||
T Consensus 218 ~d~~~l~~~l~~~~~~~aavi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 218 NDVEGTADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGISAD 294 (465)
Confidence 789999999976556899999999 899999999999999999999999999999999999 6 9999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||+++|| +|+|++++++++++.+... ..+++.+++||++||++|++++++|+.++++++.+++++++++++++|
T Consensus 295 i~t~sK~lg~G-~piG~v~~~~~i~~~l~~~-~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L 372 (465)
T 2yky_A 295 LTTLGKYIGGG-MSFGAFGGRRDLMERFDPA-RDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANL 372 (465)
Confidence 99999999998 7999999999999988641 112346789999999999999999999988889999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCc----c---chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHH
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDP----E---QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~----~---~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~ 637 (965)
+++ .+++.+..+++.|+|+++++...+. . ........+.+.|+++||++.|.+... ||+++++++++++
T Consensus 373 ~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~---~s~~~t~edid~~ 449 (465)
T 2yky_A 373 NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA---LSLEIADAGRDAF 449 (465)
Confidence 887 4566556899999999998861010 0 011224468889999999999865222 8899999999999
Q ss_pred HHhhhcccccHH
Q psy8199 638 TSAIFQTFNELD 649 (965)
Q Consensus 638 ~~~l~~~~~~~~ 649 (965)
++++.+++.++.
T Consensus 450 l~~l~~~l~~~~ 461 (465)
T 2yky_A 450 AEALADFIGEQR 461 (465)
Confidence 999987765543
No 21
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.9e-48 Score=442.55 Aligned_cols=362 Identities=30% Similarity=0.496 Sum_probs=320.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++||||.+++++++|||+||+|.+|+.+++++..+.. ..++++...++++++++.++ .++++|++||+|
T Consensus 28 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~e 104 (395)
T 3nx3_A 28 VYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAKASA--LERVFFTNSGTE 104 (395)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred eEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 45678999999999999985 689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++..+| +++++||+++++|||++..++++++.+.++..+.+...++.++|.
T Consensus 105 a~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 166 (395)
T 3nx3_A 105 SIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY----------------- 166 (395)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-----------------
T ss_pred HHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-----------------
Confidence 99999999988766666 578899999999999999999999877777667776667777765
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|+++++ +++++|++|| +++++|.++++++++++|+++|++||+++|+||||+|||++|.+++++++++.||
T Consensus 167 ~d~~~l~~~l~---~~~~~v~~~~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 167 NDISSVEKLVN---EKTCAIILES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp TCHHHHHTTCC---TTEEEEEEES-EECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred CCHHHHHHhcc---CCeEEEEEeC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 36788888774 5789999999 9999999999999999999999999999999999999999999888999999999
Q ss_pred eeeeccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
++||||++++| +|+|++++++++ ++.+.. ..+++|+++||+++++++++|+.++++++.++++++++++++.
T Consensus 243 ~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~ 315 (395)
T 3nx3_A 243 IMTSAKALGCG-LSVGAFVINQKVASNSLEA------GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQS 315 (395)
T ss_dssp EEEECGGGTTT-SCCEEEEECHHHHHHHSCT------TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEecccccCC-CceEEEEEchhhhhhhcCC------cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999999 777754 3578999999999999999999887788999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
|+++ .++|.+..+++.|+|+.+++. .. .....+.+.|.++||++++.+ +++||+|++.+++++++++++++.
T Consensus 316 l~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 316 LDELINEFDFCKKRKGLGFMQGLSLD-KS-----VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp HHHHHHHCTTEEEEEEETTEEEEEEC-TT-----SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeEEEEEEEEeC-Cc-----chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9886 557778889999999999886 21 124567888999999999874 799999999999999999999987
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+.+
T Consensus 390 ~~l 392 (395)
T 3nx3_A 390 KAL 392 (395)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 22
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=8.9e-49 Score=451.39 Aligned_cols=368 Identities=20% Similarity=0.267 Sum_probs=307.5
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +|+||.|||+||||.+++|+++|||+||+|++|+.+|++++.+ .+++++...+|++++++.++ +.+
T Consensus 35 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~~~ 110 (429)
T 3k28_A 35 NPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS---FGAPTEIENKLAKLVIERVP-SIE 110 (429)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHHHST-TCS
T ss_pred CCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC---cCCCCHHHHHHHHHHHHhCC-CCC
Confidence 45555 9999999999999999999999999999999999999988633 35778999999999999987 789
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc--c-----cCCCeeEecC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT--S-----LLNKTYIITT 388 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~ 388 (965)
+++|++||+||++.|+++++.+ +++++||+++++|||++..++..++......... + .......+|.
T Consensus 111 ~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 3k28_A 111 IVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAY 184 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEET
T ss_pred EEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCC
Confidence 9999999999999999999887 4788999999999999999888776432111000 0 0012222222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC
Q psy8199 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468 (965)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 468 (965)
+|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+||
T Consensus 185 -----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~ 246 (429)
T 3k28_A 185 -----------------NDLESVKYAFEQFGDDIACVIVEP-VAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF 246 (429)
T ss_dssp -----------------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred -----------------CCHHHHHHHHHhCCCCEEEEEEcC-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 478999999976656899999999 99999999999999999999999999999999999999
Q ss_pred CcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc
Q psy8199 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548 (965)
Q Consensus 469 gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~ 548 (965)
|+|.+++++++++.||++||||++++| +|+|++++++++++.+.. ...+.+++||++||++|++++++|+.++ +
T Consensus 247 -~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~a~aaa~aal~~~~-~ 320 (429)
T 3k28_A 247 -RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAP---SGPIYQAGTLSGNPLAMAAGYETLVQLT-P 320 (429)
T ss_dssp -TSSTTHHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHTCC-H
T ss_pred -ccCcchHHHHhCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhcc---CCCccccCCCCCChHHHHHHHHHHHHHH-H
Confidence 999988899999999999999999887 899999999999988754 1235688999999999999999999876 6
Q ss_pred cHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc--------chhhHHHHHHHHHHHcCcEEeecC-
Q psy8199 549 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIG- 618 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~~~~~~- 618 (965)
++.++++++++++++.|+++ ..++.+..+++.|+|+++++. .+.. +.......+.+.|+++||+++|.+
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 399 (429)
T 3k28_A 321 ESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFT-DEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQF 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEe-cCCcccccccccccHHHHHHHHHHHHHCCeEEecCCC
Confidence 78999999999999999887 556777789999999999875 2110 112234568888999999999864
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.+|++ +.+++++++++++++.+.+
T Consensus 400 ~~~r~~--~~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 400 EGLFLS--TVHSDADIEATIAAAEIAM 424 (429)
T ss_dssp SCBCCC--TTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEE--CCCCHHHHHHHHHHHHHHH
Confidence 567774 8999999999999987654
No 23
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=3.3e-48 Score=448.34 Aligned_cols=379 Identities=24% Similarity=0.407 Sum_probs=317.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+|+||.||++|||+.+++++++|||+||+|.+|+.+++++..+++...++++...+++++|++.++.+. ++++|++||+
T Consensus 35 ~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggs 114 (439)
T 3dxv_A 35 ARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGS 114 (439)
T ss_dssp TEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHH
T ss_pred CEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHH
Confidence 899999999999999999999999999999999999998876665567889999999999999997677 7999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC--ccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS--FKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+|++.|+++++.+ +++++||+++++|||++..++.+++... ++..+.+..+++.++|.+...... ..
T Consensus 115 ea~~~al~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 183 (439)
T 3dxv_A 115 DANEAAYRAIVKA------TGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP---TG-- 183 (439)
T ss_dssp HHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT---TS--
T ss_pred HHHHHHHHHHHHH------hCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc---cH--
Confidence 9999999998876 3778999999999999999999888655 666666666666666665432211 01
Q ss_pred HHHHHHHHHHHHHH-hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 403 IARCAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~-~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
..|+++|+++++ ...+++++|++|| +++++|.+.++++|+++|+++|++||++||+||+|+||||+|.++++++++
T Consensus 184 --~~d~~~le~~l~~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~ 260 (439)
T 3dxv_A 184 --DAILTLLTEKLAAVPAGSIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260 (439)
T ss_dssp --HHHHHHHHHHHHTSCTTCEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTT
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcC
Confidence 128999999994 3356799999999 999999999999999999999999999999999999999999988899999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++||||++++| +|+|++++++++++.+.. ..+++|+ +||+++++++++|+.++++++.++++++++++
T Consensus 261 ~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~~------~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~ 332 (439)
T 3dxv_A 261 FVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------FAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLL 332 (439)
T ss_dssp CCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCSS------SSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCEEEEcchhcCC-cceEEEEECHHHHhhhcC------CCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999988 699999999999988765 3578899 99999999999999888788999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~ 635 (965)
++.|+++ ..++.+..+++.|+|+++++..... .+.......+.+.|+++||++.+.+ +++||+|++.+++++++
T Consensus 333 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~ 412 (439)
T 3dxv_A 333 RDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIH 412 (439)
T ss_dssp HHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHH
Confidence 9999887 4677788899999999998851110 0112235568888999999999875 79999999999999999
Q ss_pred HHHHhhhcccc
Q psy8199 636 HMTSAIFQTFN 646 (965)
Q Consensus 636 ~~~~~l~~~~~ 646 (965)
++++++.+.+.
T Consensus 413 ~~l~~l~~~l~ 423 (439)
T 3dxv_A 413 KALDLLDRAFS 423 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876554
No 24
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=2.4e-47 Score=439.72 Aligned_cols=403 Identities=36% Similarity=0.650 Sum_probs=328.5
Q ss_pred cccccccCcccccccccCCCc-e-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDD-I-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~-~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
-.+|||++....+ .|+. + +|+||.+|++|||+.++.|++++||.+|+|++|+.++++...+++..+++++
T Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (429)
T 1s0a_A 11 RHILHPFTSMTSP----LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHA 86 (429)
T ss_dssp HHBCCTTCCSSSC----CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECH
T ss_pred Hhhcccccccccc----CCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCH
Confidence 3457776654322 3544 3 8999999999999999999999999999999999999987644333456788
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC-ccchh
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS-FKEIY 376 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~-~~~~~ 376 (965)
...+++++++++++.+.++|+|++||+||++.|+++++.++..+|++ +++||+++++|||++..++.+++... ++..+
T Consensus 87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~ 165 (429)
T 1s0a_A 87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW 165 (429)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC-CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC-CCeEEEECCCCCCCchhhhhhcCCchhhcccc
Confidence 88999999999998778999999999999999999987765444433 67899999999999988887776433 44445
Q ss_pred cccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhc
Q psy8199 377 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.+...++..++.|..... ..+...|+++|+++++++.+++++|++|| + +|++|.++++++++++|+++|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~------~~~~~~d~~~l~~~l~~~~~~~~~vi~~p-~~~n~tG~~~~~~~~l~~i~~l~~~~ 238 (429)
T 1s0a_A 166 KGYLPENLFAPAPQSRMD------GEWDERDMVGFARLMAAHRHEIAAVIIEP-IVQGAGGMRMYHPEWLKRIRKICDRE 238 (429)
T ss_dssp TTTSCCCEEECCCCSBC-------CCCCGGGGHHHHHHHHHHTTTEEEEEECS-SEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred cCCCCCceEeCCCccccc------ccchHHHHHHHHHHHHhCCCCEEEEEEee-cccCCCCcccCCHHHHHHHHHHHHHc
Confidence 555556677776532100 00112578899998875445789999999 8 899999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~ 535 (965)
|+++|+||+|+|||++|.+++++++++.||++||||+++|||+|+|++++++++++.+... ..+.+.+++|+++|++++
T Consensus 239 ~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~-~~~~~~~~~t~~~n~~~~ 317 (429)
T 1s0a_A 239 GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG-EAGCFMHGPTFMGNPLAC 317 (429)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTS-TTSSCSCCCTTTTCHHHH
T ss_pred CCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcC-CCcccccCCCCCCCHHHH
Confidence 9999999999999999987788888999999999999998868999999999998888652 122344678999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
+++.++|+.++++++.++++++++++.++|+++...|.+..+++.|+|+.+++. .. .....+.+.|.++||++.
T Consensus 318 ~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~l~~~l~~~Gi~v~ 391 (429)
T 1s0a_A 318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT-HP-----VNMAALQKFFVEQGVWIR 391 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEES-SC-----BCHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEEC-Cc-----ccHHHHHHHHHHCCCEEe
Confidence 999999998877788999999999999999887556777778889999888875 11 013457788889999999
Q ss_pred ecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 616 PIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 616 ~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.++++||+|++.+++++++++++++.+.+
T Consensus 392 ~~~~~iRis~~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 392 PFGKLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp CBTTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 988899999999999999999999987654
No 25
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=2.9e-48 Score=448.71 Aligned_cols=382 Identities=21% Similarity=0.331 Sum_probs=315.6
Q ss_pred eEEEe-cCCcccccccccchhccCCCCCHHHH-H-HHHH---HHhhccccccCCCCcHHHHHHHHHHHhhcC-CCCCeEE
Q psy8199 246 SKLIT-FSGKRYLDAISSWWVNLFGHSNSYIN-K-ALKN---QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCF 318 (965)
Q Consensus 246 ~~~~d-~dG~~ylD~~~~~~~~~lGh~~p~v~-~-av~~---~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~v~ 318 (965)
+|+|| .||++|||+.+++|+++|||+||+|+ + |+.+ +++.+.+++ +.+.++...+++++|+++++ .+.++|+
T Consensus 45 ~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~~~~~~~~v~ 123 (449)
T 2cjg_A 45 SYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVLGDPALPHLF 123 (449)
T ss_dssp TEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred CEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 89999 99999999999999999999999999 9 9999 888765544 45788889999999999986 4678999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhc----C--CCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCC-
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNK----G--FLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPD- 390 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~----g--~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 390 (965)
|++||+||++.|+++++.++..+ | .+++++||+++++|||++.+++++++. +.++..+.++..++.++|.++
T Consensus 124 ~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 99999999999999998775321 1 123789999999999999999998885 334445555555666666543
Q ss_pred -CCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC
Q psy8199 391 -SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469 (965)
Q Consensus 391 -~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 469 (965)
...+ ........|+++|+++++++.+++++|++|| ++|++|.++++++|+++|+++|++||++||+||||+|||
T Consensus 204 ~~~~~----~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g 278 (449)
T 2cjg_A 204 GLDEP----AMAALEAEALRQARAAFETRPHDIACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278 (449)
T ss_dssp TCCHH----HHHHHHHHHHHHHHHHHHHSTTTEEEEEECS-EETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred hhhcc----ccchhhHHHHHHHHHHHHhcCCceEEEEEeC-cCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCC
Confidence 1100 0011223578889999976556799999999 999999989999999999999999999999999999999
Q ss_pred cccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc
Q psy8199 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549 (965)
Q Consensus 470 r~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~ 549 (965)
|+|.+++++++++.||++||||++ |+|++++++++++.+... ......+++||++||++++++.++|+.+.+++
T Consensus 279 ~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~-~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~ 352 (449)
T 2cjg_A 279 LTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNV-FAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352 (449)
T ss_dssp TTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCT-TTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhc-ccCCcccccCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999988888899999999999988 899999999988763210 00113577899999999999999999887778
Q ss_pred HHHHHHHHHHHHHHHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCC
Q psy8199 550 ILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPP 626 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~ 626 (965)
+.+++++++++++++|+++ ..++. +..+++.|+|+++++. + ......+.+.|+++||++.+.+ +++||+|+
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~--~----~~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~ 426 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLP--T----TADRDELIRQLWQRAVIVLPAGADTVRFRPP 426 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECS--S----HHHHHHHHHHHHHTTEECEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEEC--C----hHHHHHHHHHHHHCCeEEecCCCCEEEEECC
Confidence 9999999999999999887 45675 7788999999998774 2 1124568888999999999875 79999999
Q ss_pred cccCHHHHHHHHHhhhccc
Q psy8199 627 YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~ 645 (965)
+.+++++++++++++.+++
T Consensus 427 ~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 427 LTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 26
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=5.4e-48 Score=445.06 Aligned_cols=370 Identities=21% Similarity=0.311 Sum_probs=296.7
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +|+||.||++||||.+++++++|||+||+|++|+.+|++++.+ .+++++...+|++++++.++ +.+
T Consensus 35 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~ 110 (429)
T 4e77_A 35 IPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS---FGAPTEMEVKMAQLVTDLVP-TMD 110 (429)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC---CSSCCHHHHHHHHHHHHHST-TCS
T ss_pred CCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcc---cCCCCHHHHHHHHHHHhhCC-CCC
Confidence 45555 9999999999999999999999999999999999999988633 34678999999999999998 789
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc-------hhcccCCCeeEecC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE-------IYTSLLNKTYIITT 388 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 388 (965)
+++|++||+||++.|+++++.+ +++++||+++++|||++..++..++...... ...........++
T Consensus 111 ~v~~~~sGsea~~~al~~a~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (429)
T 4e77_A 111 MVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCT- 183 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEEC-
T ss_pred EEEEeCcHHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecC-
Confidence 9999999999999999999887 4788999999999999987665544221110 0000111122222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC
Q psy8199 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468 (965)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 468 (965)
++|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+||
T Consensus 184 ----------------~~d~~~le~~l~~~~~~~~~vi~ep-~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~ 246 (429)
T 4e77_A 184 ----------------YNDLASVRQAFEQYPQEVACIIVEP-VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF 246 (429)
T ss_dssp ----------------TTCHHHHHHHHHHSTTTEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT
T ss_pred ----------------CCCHHHHHHHHHhcCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 2478999999987667899999999 99999999999999999999999999999999999999
Q ss_pred CcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc
Q psy8199 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548 (965)
Q Consensus 469 gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~ 548 (965)
|+|.+++++++++.||++||||++++| +|+|++++++++++.+... ....+++||++||+++++++++|+.++++
T Consensus 247 -r~g~~~~~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 321 (429)
T 4e77_A 247 -RVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPT---GPVYQAGTLSGNPIAMAAGFACLTEISQV 321 (429)
T ss_dssp -TTBTTCHHHHTTCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTTT---SSBCC--CCCCCHHHHHHHHHHHHHHTST
T ss_pred -ccCcchHHHhcCCCCCeeeecccccCC-CCeEEEEECHHHHHHhccC---CCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999988999999999999999999988 7999999999999888641 22457899999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc--------hhhHHHHHHHHHHHcCcEEeecC-
Q psy8199 549 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAALKNELLLRPIG- 618 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~--------~~~~~~~~~~~l~~~Gi~~~~~~- 618 (965)
++.++++++++++++.|+++ .+++.+..+++.|+|+++++...+... .......+.+.|+++||++++.+
T Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 401 (429)
T 4e77_A 322 GVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF 401 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC
Confidence 89999999999999999886 455666688999999999986211000 11223578889999999999875
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
..+| +++.+++++++++++++.+.+
T Consensus 402 ~~~~--~~~~~t~e~i~~~l~~l~~~l 426 (429)
T 4e77_A 402 EAGF--MSLAHSNEDIQKTVNAARRCF 426 (429)
T ss_dssp SCEE--CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEE--EeccCCHHHHHHHHHHHHHHH
Confidence 3444 468999999999999987654
No 27
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=1.7e-47 Score=441.62 Aligned_cols=385 Identities=23% Similarity=0.360 Sum_probs=319.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|+.+|||+||+|++|+.++++...+.+ .+++++...++++++++.++.+.++|+|++||+|
T Consensus 35 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 113 (433)
T 1zod_A 35 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANITPPGLDRALLLSTGAE 113 (433)
T ss_dssp TEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred CEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence 899999999999999999999999999999999999998765432 4677888999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.+ +++++||+++++|||++..++++++... ...+.+...++..++.|..+..+++.+.+.+..
T Consensus 114 a~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 186 (433)
T 1zod_A 114 SNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL 186 (433)
T ss_dssp HHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSC-CSSSCCCCTTEEEECCCCTTSCCCEETTEECHH
T ss_pred HHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCcc-ccccCCCCCCceEecCCcccccccCCchhhhHH
Confidence 999999988765 3678999999999999998888876543 333445556777777764433221111112334
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
.|+++|++++++. .+++++|++|| +++++|.++++++++++|+++|++||+++|+||||+||||+|.+++++++++.|
T Consensus 187 ~d~~~le~~l~~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~ 265 (433)
T 1zod_A 187 AELDYAFDLIDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 265 (433)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECS-EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCC
Confidence 5789999998753 25789999999 889999889999999999999999999999999999999999888888889999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|+++|||++++| +|+|++++++++++.+... .+.+++|+++|+++++++.++|+.++++++.+++++++++++++
T Consensus 266 di~s~sK~~~~G-~~ig~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~ 340 (433)
T 1zod_A 266 DILTLSKTLGAG-LPLAAIVTSAAIEERAHEL----GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRG 340 (433)
T ss_dssp SEEEECHHHHTT-SSCEEEEECHHHHHHHHHT----TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CEEEecccccCC-CCeeEEEEhHHHHHhhccC----CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999988 8999999999999888651 13466899999999999999999988778999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHH
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~ 635 (965)
|+++ ..++.+..+++.|+|+++++. .+.. ........+.+.|+++||++.+++ +++||+|++.+++++++
T Consensus 341 l~~l~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~ 419 (433)
T 1zod_A 341 LLDLMERFDCIGDVRGRGLLLGVEIV-KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEID 419 (433)
T ss_dssp HHHHHHHCTTEEEEEEETTEEEEEEE-EETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHH
T ss_pred HHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHH
Confidence 9887 356777788999999999886 2110 001224568888999999998864 79999999999999999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+.+
T Consensus 420 ~~l~~l~~~l 429 (433)
T 1zod_A 420 LGLSLLGQAI 429 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 28
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.1e-47 Score=440.52 Aligned_cols=365 Identities=25% Similarity=0.434 Sum_probs=312.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.+++++..+++ ..+.++...+++++|+++++ .++|+|++||+|
T Consensus 49 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~ggte 125 (420)
T 2pb2_A 49 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS-NVFTNEPALRLGRKLIDATF--AERVLFMNSGTE 125 (420)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-TTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHH
T ss_pred CEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhhCC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 34678899999999999984 689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++..+|.+++++||+++++|||++..++..++...++..+.++..++..+|.
T Consensus 126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----------------- 188 (420)
T 2pb2_A 126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF----------------- 188 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-----------------
T ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-----------------
Confidence 999999999988777777777899999999999998888777755444455566666666664
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|++++. +++++|++|| +++++|.+.++.+++++|+++|++||++||+||+|+||||+|.+++++.+++.||
T Consensus 189 ~d~~~le~~i~---~~~~~vi~~p-~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~d 264 (420)
T 2pb2_A 189 NDLHAVKAVMD---DHTCAVVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPD 264 (420)
T ss_dssp TCHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred CCHHHHHHHhc---cCceEEEEeC-CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCC
Confidence 36788988885 4789999999 8998888888999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+++||++||++|+++.++|+.++++++.++++++++++.+.|
T Consensus 265 iit~sK~l~~G-~~iG~~~~~~~l~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L 337 (420)
T 2pb2_A 265 ILTSAKALGGG-FPVSAMLTTQEIASAFHV------GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHL 337 (420)
T ss_dssp EEEECGGGGTT-SCCEEEEECHHHHTTCC----------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEecccccCC-CceEEEEEhHHHHHhhcC------CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999998887754 24778999999999999999999887788999999999999999
Q ss_pred Hccc-CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++. .++.+..+++.|+|+.+++. .+ .......+.+.|.++||++.+.+ +++||+||+.+++++++++++++.+
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~v~~~-~~---~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 338 QAIDEQFDIFSDIRGMGLLIGAELK-PK---YKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp HHHHHHHCCEEEEEEETTEEEEEEC-GG---GTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecceEEEEEEC-CC---chHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8863 45667778899999999885 11 00124568888999999999874 7999999999999999999999876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
++
T Consensus 414 ~l 415 (420)
T 2pb2_A 414 AV 415 (420)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 29
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=2e-47 Score=440.19 Aligned_cols=369 Identities=21% Similarity=0.255 Sum_probs=309.0
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +|+||.||++|||+.+|+|++++||+||+|++|+.++++++.++ +++++...+|++++++.++ +.+
T Consensus 34 ~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~-~~~ 109 (427)
T 3fq8_A 34 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF---GAPCALENVLAEMVNDAVP-SIE 109 (427)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHHHST-TCS
T ss_pred CCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHHHhCC-CCC
Confidence 45555 99999999999999999999999999999999999999886443 3478999999999999997 789
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCC--------CeeEec
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN--------KTYIIT 387 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 387 (965)
+|+|++||+||++.|+++++.+ +++++||+++++|||++..++..++....... .+... .+..+|
T Consensus 110 ~v~~~~ggsea~~~al~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (427)
T 3fq8_A 110 MVRFVNSGTEACMAVLRIMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLG-LPSSPGVPKKTTANTLTTP 182 (427)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHT-CCSCSSSCHHHHTTEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCCHHHHHhcCCcccccC-CCCCCCCCCcccCceeecC
Confidence 9999999999999999999887 47789999999999999888887764321110 01111 122222
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC
Q psy8199 388 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 467 (965)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 467 (965)
. +|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+|
T Consensus 183 ~-----------------~d~~~le~~l~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g 244 (427)
T 3fq8_A 183 Y-----------------NDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITG 244 (427)
T ss_dssp T-----------------TCHHHHHHHHHHSTTTEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTB
T ss_pred C-----------------CCHHHHHHHHHhCCCCEEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence 2 478999999987667899999999 9999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 468 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 468 ~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
| |+|..++.+++++.||++||||++++| +|+|++++++++++.+.. ...+.+++|+++||+++++++++|+.+++
T Consensus 245 ~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~~~aa~~aal~~~~~ 319 (427)
T 3fq8_A 245 F-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---AGPMYQAGTLSGNPLAMTAGIKTLELLRQ 319 (427)
T ss_dssp T-TTBTTHHHHHTTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred c-ccCcchhhHhcCCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhcc---CCCccccCCCCcCHHHHHHHHHHHHHHHh
Confidence 9 999888889999999999999999988 799999999999998864 13356889999999999999999999888
Q ss_pred ccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc--------hhhHHHHHHHHHHHcCcEEeecC
Q psy8199 548 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAALKNELLLRPIG 618 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~--------~~~~~~~~~~~l~~~Gi~~~~~~ 618 (965)
+++.++++++++++++.|+++ ...+....+++.|+++++++. .+... .......+.+.|+++||++++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~ 398 (427)
T 3fq8_A 320 PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFT-EGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398 (427)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEe-cCccccccccccccHHHHHHHHHHHHHCCcEEecCC
Confidence 889999999999999999887 445555578899999999885 21111 11224568889999999999875
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
. .|+.+++.+++++++++++++.+.+
T Consensus 399 ~-~r~~~~~~~t~e~i~~~l~~l~~~l 424 (427)
T 3fq8_A 399 F-EAGFTSLAHTEEDIDATLAAARTVM 424 (427)
T ss_dssp T-SCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred C-CCEEeeCcCCHHHHHHHHHHHHHHH
Confidence 3 3667789999999999999987654
No 30
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-45 Score=422.33 Aligned_cols=370 Identities=23% Similarity=0.426 Sum_probs=304.2
Q ss_pred eEEEecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCCh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDG 323 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sG 323 (965)
+|+||.+|++|||+.++.|++++||+ ||+|++|+.++++...+++...++++...++++++++.++.+ .++|+|++||
T Consensus 34 ~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (419)
T 2eo5_A 34 VWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSG 113 (419)
T ss_dssp TEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred CEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence 89999999999999999999999999 999999999999876544435678888999999999999866 6799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCC---
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNS--- 399 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (965)
+||++.|+++++.+ + +++||+++++|||++..++++++.. .++..+.+...++..+|.++.+..+++..
T Consensus 114 ~ea~~~ai~~~~~~------~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~ 186 (419)
T 2eo5_A 114 TEAIEASIKVVKNT------G-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYE 186 (419)
T ss_dssp HHHHHHHHHHHHTT------S-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTT
T ss_pred HHHHHHHHHHHHHh------h-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccc
Confidence 99999999988764 2 6899999999999999888887754 44444555555677887765433222211
Q ss_pred -h-hHHHHHHHHHHH-HHHHhCC--CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc
Q psy8199 400 -A-NEIARCAIFDLE-ILLKKNH--NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 474 (965)
Q Consensus 400 -~-~~~~~~d~~~le-~~l~~~~--~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~ 474 (965)
. ..+. .|+++|+ +++++.. +++++|++|| +++++|.++++++++++|+++|++||+++|+||+|+|||++|.+
T Consensus 187 ~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~ 264 (419)
T 2eo5_A 187 NPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKL 264 (419)
T ss_dssp CHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcch
Confidence 0 1233 5788999 8887431 4689999999 88889988999999999999999999999999999999999987
Q ss_pred ccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH
Q psy8199 475 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554 (965)
Q Consensus 475 ~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~ 554 (965)
++++++++.||++||||++++|++|+|+++++++++ .+ . ..+++|+++|+++++++.++|+.+++ +.+++
T Consensus 265 ~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~------~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~ 334 (419)
T 2eo5_A 265 FAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P------GMHSNTFGGNALACAIGSKVIDIVKD--LLPHV 334 (419)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------------CCCCCHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C------cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 788888999999999999998768999999999987 66 3 14678999999999999999998764 88999
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHH
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNE 633 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~ 633 (965)
++++++|.+.|+++ +..+++.|+|+.+++. .+ ..... +.+.|+++||++++.+ +++||+|++.+++++
T Consensus 335 ~~~~~~l~~~L~~~-----~~~~~~~g~~~~i~~~-~~----~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~ 403 (419)
T 2eo5_A 335 NEIGKIFAEELQGL-----ADDVRGIGLAWGLEYN-EK----KVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEE 403 (419)
T ss_dssp HHHHHHHHHHHTTS-----SSEEEEETTEEEEECS-CH----HHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHHHh-----hhheEeeeEEEEEEEe-cC----ccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHH
Confidence 99999999999765 4567889999988773 11 12245 7788899999999975 899999999999999
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
++++++++.+.+
T Consensus 404 i~~~l~~l~~~l 415 (419)
T 2eo5_A 404 AKQGLDILKKVI 415 (419)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 31
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=2.6e-45 Score=423.29 Aligned_cols=365 Identities=17% Similarity=0.241 Sum_probs=297.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.+++++..+ .+++++...+++++|++.++ +.++|+|++||+|
T Consensus 48 ~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgse 123 (434)
T 2epj_A 48 AYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTE 123 (434)
T ss_dssp TEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHH
T ss_pred CEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 8999999999999999999999999999999999999987422 35678889999999999987 6899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC--------CCeeEecCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------NKTYIITTPDSRNINKG 397 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 397 (965)
|++.|+++|+.+ +++++||+++++|||++..+++.++...... ..+.. ..+..+|.
T Consensus 124 A~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~~~~--------- 187 (434)
T 2epj_A 124 ATMTAIRLARGY------TGRDLILKFDGCYHGSHDAVLVAAGSAAAHY-GVPTSAGVPEAVARLTLVTPY--------- 187 (434)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEEETCCCCSSGGGSEECC-------CEESSTTCCHHHHTTEEEEET---------
T ss_pred HHHHHHHHHHHh------hCCCeEEEEcCCcCCCCHHHHHhcCCCcccc-CCCCCCCCCCcccCceEecCC---------
Confidence 999999998876 3678999999999999888776654311000 00111 12333332
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
+|+++|++++++.++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+|| |+|.++++
T Consensus 188 --------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~ 257 (434)
T 2epj_A 188 --------NDVEALERVFAEYGDRIAGVIVEP-VIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQ 257 (434)
T ss_dssp --------TCHHHHHHHHHHHGGGEEEEEECS-SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHH
T ss_pred --------CCHHHHHHHHHhCCCCEEEEEEeC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhh
Confidence 478899999875445799999999 89999999999999999999999999999999999999 88888888
Q ss_pred cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD 557 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~ 557 (965)
+++++.||++||||++++| +|+|++++++++++.+... ....+++||++||++++++.++|+.++++++.++++++
T Consensus 258 ~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~---~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~ 333 (434)
T 2epj_A 258 GYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQ---GKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREA 333 (434)
T ss_dssp HHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhCCCCCeeeecchhcCC-cceeeeeecHHHHHhhccC---CCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999999999999998 7999999999999877541 12347789999999999999999998778899999999
Q ss_pred HHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc--------chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcc
Q psy8199 558 MKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~ 628 (965)
++++++.|+++ .+++.+..+++.|+|+++++. .+.. ........+.+.|+++||++.+++. .|+.+++.
T Consensus 334 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~ 411 (434)
T 2epj_A 334 AKALEEAASEVLDRTGLPYTINRVESMMQLFIG-VEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL-EAVFTGLP 411 (434)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETTEEEEEET-CSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTT
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEe-CCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC-CcEEEecc
Confidence 99999999886 233444567899999999885 2100 0012345688889999999998652 24556789
Q ss_pred cCHHHHHHHHHhhhcccc
Q psy8199 629 LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~ 646 (965)
+++++++++++++.+.+.
T Consensus 412 ~t~e~i~~~l~~l~~~l~ 429 (434)
T 2epj_A 412 HQGEALEIAVEGLRSSLK 429 (434)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999876643
No 32
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=7.1e-45 Score=418.31 Aligned_cols=362 Identities=22% Similarity=0.296 Sum_probs=295.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.+++++..+ .+++++...++++++++++| +.++|+|++||+|
T Consensus 44 ~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~e 119 (424)
T 2e7u_A 44 AYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLT---FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTE 119 (424)
T ss_dssp TEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHH
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 8999999999999999999999999999999999999987432 35678889999999999987 7899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC--------CCeeEecCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------NKTYIITTPDSRNINKG 397 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 397 (965)
|++.|+++|+.+ +++++||+++++|||++..++..++..... ...+.. .....+|.
T Consensus 120 a~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~~p~~~g~~~~~~~~~~~~~~--------- 183 (424)
T 2e7u_A 120 ATMSALRLARGY------TGRPYIVKFRGNYHGHADGLLVEAGSGALT-LGVPSSAGVPEEYAKLTLVLEY--------- 183 (424)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEETTCCCCCCGGGSEECCSSSCC-BCEESSTTCCHHHHTTEEEECT---------
T ss_pred HHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccc-cCCCCCCCCCCccCCceEeCCC---------
Confidence 999999998876 367899999999999988777655432110 000111 12333332
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
+|+++|++++++.++++++|++|| +++++|.+.++++|+++|+++ ++||++||+||+|+|| |+|.++++
T Consensus 184 --------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~ 252 (424)
T 2e7u_A 184 --------NDPEGLREVLKRRGEEIAAIIFEP-VVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGAT 252 (424)
T ss_dssp --------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHH
T ss_pred --------CCHHHHHHHHHhCCCCEEEEEEeC-CCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHH
Confidence 478899998875445789999999 888899999999999999999 9999999999999999 88888888
Q ss_pred cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQ 556 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~ 556 (965)
+++++.||++||||++++| +|+|++++++++++.+... ....+++||++||++|+++.++|+.+++ +++.+++++
T Consensus 253 ~~~~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 328 (424)
T 2e7u_A 253 ELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPL---GPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLED 328 (424)
T ss_dssp HHHTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTT---SSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred HHhCCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhccc---CCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8899999999999999988 8999999999999887641 1235788999999999999999999877 789999999
Q ss_pred HHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc--------chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCc
Q psy8199 557 DMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIGNTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~ 627 (965)
++++++++|+++ .+++.+..+++.|+|+++++. .+.. ........+.+.|+++||++.+.+. .|+.+++
T Consensus 329 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~ 406 (424)
T 2e7u_A 329 LGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT-EGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-EAAFLSV 406 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-SCEECCT
T ss_pred HHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEe-CCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-CceEeec
Confidence 999999999886 334544568899999999875 2110 0112345688889999999998652 2345669
Q ss_pred ccCHHHHHHHHHhhhcc
Q psy8199 628 ILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~ 644 (965)
.+++++++++++++.++
T Consensus 407 ~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 407 AHREEDVEKTLEALRKA 423 (424)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
No 33
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=2.3e-43 Score=401.60 Aligned_cols=360 Identities=26% Similarity=0.438 Sum_probs=311.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++++.++||+||+|.+|+.++++...+.. ..++.+...++++++++.++ .++++|++||++
T Consensus 28 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~ 104 (392)
T 3ruy_A 28 VWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS-RAFHSDQLGPWYEKVAKLTN--KEMVLPMNTGAE 104 (392)
T ss_dssp TEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-TTSEETTHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHhcC--CCEEEEeCcHHH
Confidence 899999999999999999999999999999999999998865543 34678889999999999985 789999999999
Q ss_pred HHHHHHHHHHHHH-HhcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYW-YNKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~-~~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.++ ..+|. +++++|++.+++|||.+..++++++...++..+.+...++..++.
T Consensus 105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 169 (392)
T 3ruy_A 105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY--------------- 169 (392)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT---------------
T ss_pred HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc---------------
Confidence 9999999887652 22332 346799999999999999998888876766666666666655544
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ +++++|+++| ++|++|.+.++++|+++|.++|++||+++|+||+|+|||++|.+++.+.+++.
T Consensus 170 --~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 243 (392)
T 3ruy_A 170 --GDLEALKAAIT---PNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT 243 (392)
T ss_dssp --TCHHHHHHHCC---TTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --ccHHHHHHHhc---cCeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCC
Confidence 36889998885 5789999999 99999999999999999999999999999999999999999998888889999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+++||++|+|++++++++++.+.. ..+++++++|+++++++.++|+.+..+++.++++++.+++.+
T Consensus 244 ~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (392)
T 3ruy_A 244 PDMYILGKALGGGVFPISCAAANRDILGVFEP------GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317 (392)
T ss_dssp CSEEEECGGGGTTTSCCEEEEECHHHHTTCCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEEchhhhCChhhhEEEEECHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999987899999999999887754 357789999999999999999988777899999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++ ..+.+..+++.|.++.+.+. . ....+.+.|.++||++.|.+ +++|++|++.+++++++++++++.
T Consensus 318 ~L~~~-~~~~~~~~~~~g~~~~~~~~-~-------~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 388 (392)
T 3ruy_A 318 QLKEI-DNPMITEVRGKGLFIGIELN-E-------PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIK 388 (392)
T ss_dssp HHTTC-CCTTEEEEEEETTEEEEEES-S-------CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHh-cCCCceEEEeeeeEEEEEEc-c-------hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99876 23567788899999999874 1 13467788999999999875 799999999999999999999887
Q ss_pred cc
Q psy8199 643 QT 644 (965)
Q Consensus 643 ~~ 644 (965)
++
T Consensus 389 ~~ 390 (392)
T 3ruy_A 389 AV 390 (392)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 34
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=9.1e-44 Score=412.65 Aligned_cols=366 Identities=18% Similarity=0.267 Sum_probs=279.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.++++...+ .++.++...++++++++.++ +.++|+|++||+|
T Consensus 49 ~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~e 124 (453)
T 2cy8_A 49 VHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTE 124 (453)
T ss_dssp TEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHH
T ss_pred CEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHH
Confidence 8999999999999999999999999999999999999987432 25788999999999999987 7889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC----cCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI----QSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|++.|+++|+.+ +++++||+++++|||++..++..++. +............+..+|.
T Consensus 125 A~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------- 185 (453)
T 2cy8_A 125 TTLLALRVARAF------TGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------------- 185 (453)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEECC----------------------------CGGGEEEECT-------------
T ss_pred HHHHHHHHHHHh------hCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------------
Confidence 999999998866 36788999999999998877765542 1000000000112233332
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
+|+++|+++++++++++++|++|| +++++|.++++++|+++|+++|++||++||+||+|+|| |+|.++++++++
T Consensus 186 ----~d~~~le~~l~~~~~~~~~vi~ep-~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~ 259 (453)
T 2cy8_A 186 ----DDIEGMREVFANHGSDIAAFIAEP-VGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLD 259 (453)
T ss_dssp ----TCHHHHHHHHHHHGGGEEEEEECS-SEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHT
T ss_pred ----CCHHHHHHHHHhcCCCEEEEEECC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhC
Confidence 378899999875445789999999 88889988999999999999999999999999999999 888888888889
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-HhcccHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNKDNILQRISQDMKK 560 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~~~~~~~~~~~~~~ 560 (965)
+.||+++|||++++| +|+|++++++++++.+... ......+++||++||++++++.++|+. + .+++.+++++++++
T Consensus 260 ~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~-~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~ 336 (453)
T 2cy8_A 260 VQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRG-SDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQF 336 (453)
T ss_dssp CCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSC-C---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred CCCcEEEEChhhhCC-cceEEEechHHHHHHhccc-cCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 999999999999988 7999999999999877541 112234678999999999999999998 7 67899999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeec-----Cc------c---chhhHHHHHHHHHHHcCcEEeecCCEEEEeC
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIE-----DP------E---QIETFSKKFFVAALKNELLLRPIGNTVYLMP 625 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~-----~~------~---~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p 625 (965)
+++.|+++ .+++.+..+++.|+|+++++. . +. . ........+.+.|+++||++.|.+ .+| +
T Consensus 337 l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~-~~~--l 412 (453)
T 2cy8_A 337 AREAMNHLFARKGLNWLAYGRFSGFHLMPG-LPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG-SVF--L 412 (453)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTEEEEEET-SCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT-EEE--C
T ss_pred HHHHHHHHHhhCCCcEEEEEeeeEEEEEEe-ccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC-CEE--e
Confidence 99999887 345554568899999999885 2 10 0 011224568888999999997654 444 5
Q ss_pred CcccCHHHHHHHHHhhhccccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
++.+++++++++++++.+++..
T Consensus 413 ~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 413 SAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999998876543
No 35
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=1e-42 Score=398.38 Aligned_cols=366 Identities=26% Similarity=0.411 Sum_probs=316.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|++|||+.++++++++||+||++.+|+.+++++..+.. ..++++...++++++++.++ .++++|++||++
T Consensus 31 ~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~~ 107 (406)
T 4adb_A 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAE 107 (406)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHH
T ss_pred CEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHhhCC--CCeEEEeCcHHH
Confidence 899999999999999999999999999999999999998764433 45678889999999999984 569999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++..+|.+++++||+.+++||++...+...++.+.+...+.+...++..+|.+
T Consensus 108 a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 171 (406)
T 4adb_A 108 ANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN---------------- 171 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT----------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC----------------
Confidence 9999999998887777777889999999999999999888888777666666666667666653
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
|+++|+++++ +++++|+++| +++.+|++.++.+++++|.++|++||+++|+||+|+|||++|..++.+.+++.||
T Consensus 172 -d~~~l~~~l~---~~~~~v~~~p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (406)
T 4adb_A 172 -DINSASALID---DSTCAVIVEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246 (406)
T ss_dssp -CHHHHHTTCS---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred -cHHHHHHHhc---CCeEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC
Confidence 6788888774 5789999999 7888888878999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+++|+++++++++++.++|+.++++++.++++++++++.+.|
T Consensus 247 ~~t~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l 319 (406)
T 4adb_A 247 LLTTAKALGGG-FPVGALLATEECARVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL 319 (406)
T ss_dssp EEEECGGGGTT-SCCEEEEECHHHHHTCCT------TSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCC-CCeEEEEEcHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999977 899999999999988765 34778999999999999999998877788999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ ..++.+..+++.|.++.+.+. .+. ......+.+.|.++||++.+.+ +++|++|++.+++++++++++++.+
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~---~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 320 NTINHRYGLFSEVRGLGLLIGCVLN-ADY---AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp HHHHHHHCCEEEEEEETTEEEEEEC-TTT---TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEEEEEEEEEEEe-CCc---HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 876 334566778889999999886 210 1124568889999999999875 7999999999999999999999876
Q ss_pred ccc
Q psy8199 644 TFN 646 (965)
Q Consensus 644 ~~~ 646 (965)
.+.
T Consensus 396 ~l~ 398 (406)
T 4adb_A 396 ACE 398 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=5.5e-41 Score=386.56 Aligned_cols=378 Identities=28% Similarity=0.443 Sum_probs=304.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+|+||.+|++|||+.++.|+.++||.+|++.+|+.++++...+.....++++...+|++.++++++.+. ++|+|++||+
T Consensus 33 ~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~ 112 (426)
T 1sff_A 33 CRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 112 (426)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchH
Confidence 899999999999999999999999999999999999987754332234667888999999999995224 7999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
+|++.++++++.+. ++++|++++++|||+...++..++.. .++..+.+...++..+|.+..... ..
T Consensus 113 ~a~~~~~~~a~~~~------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~-------~~ 179 (426)
T 1sff_A 113 EAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-------IS 179 (426)
T ss_dssp HHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT-------BC
T ss_pred HHHHHHHHHHHHhh------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccc-------cc
Confidence 99999999776552 44589999999999987766665532 233334444445666766531110 01
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
...|+++|++++++. +.++++|++|| +++++|.+.++++++++|.++|++||+++|+||+|+||+++|.+++++.++
T Consensus 180 ~~~d~~~l~~~l~~~~~~~~~~~v~~~p-~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 258 (426)
T 1sff_A 180 EDDAIASIHRIFKNDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258 (426)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEECS-BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred hHHHHHHHHHHHHhccCCCceEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcC
Confidence 124789999988742 24689999999 777789889999999999999999999999999999999999877778889
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++|+++++++.++|+.+.++++.++++++++++
T Consensus 259 ~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l 331 (426)
T 1sff_A 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331 (426)
T ss_dssp SCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc------CCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 899999999999987 899999999999887753 2356889999999999999999988778899999999999
Q ss_pred HHHHHccc-CCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHH
Q psy8199 562 TKALTSLI-THPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i 634 (965)
+++|+++. ..+.+..+++.|.|+++++. .... +.......+.+.|.++||++.|+. +++||++++.++++++
T Consensus 332 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHHHHHHHTCTTEEEEEEETTEEEEEEB-GGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHH
Confidence 99998873 46666677888999999885 1100 111224568888999999999864 7999999999999999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 411 ~~~~~~l~~~l 421 (426)
T 1sff_A 411 RQGLEIISQCF 421 (426)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 37
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=5.8e-42 Score=372.91 Aligned_cols=228 Identities=43% Similarity=0.699 Sum_probs=178.6
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 81 (965)
|.+||.|.|..+.... .........++|+|||++|+|+|||+|++||+..+....++.+.+..+++.....+++++||
T Consensus 58 v~~gD~I~v~~~~~~~--~~~~~~~~~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vh 135 (325)
T 1v9f_A 58 VLGGEQVAINAEIEEE--ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 135 (325)
T ss_dssp --------------------CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCC
T ss_pred eCCCCEEEEecccccc--ccCCcccCCCeEEEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeec
Confidence 4556666554322110 01112334578999999999999999999999877666789998877765433345789999
Q ss_pred cCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEE
Q psy8199 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYER 161 (965)
Q Consensus 82 RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 161 (965)
|||++||||||||||+++++.|+++|++++++|+|+|+|.|.+++++.++.++..+......+.+.. +++++.|.|++
T Consensus 136 RLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~g~i~~~i~~~~~~~~~~~v~~--~gk~a~t~~~v 213 (325)
T 1v9f_A 136 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRI 213 (325)
T ss_dssp CCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCCCEEEECCEEECSSCTTCEEECT--TSBCCEEEEEE
T ss_pred CCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCCCCEEeeeeeECCCCCEEEEECC--CCeeEEEEEEE
Confidence 9999999999999999999999999999999999999999998888899999988776666666653 78999999999
Q ss_pred eEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCCccc--cc---------cccccccccccccccccccc
Q psy8199 162 LATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY--SK---------SLIFNRQALHAYKLGLIHPK 230 (965)
Q Consensus 162 ~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~~~~--~~---------~~~~~~~~Lha~~l~f~~p~ 230 (965)
+... .++|+++|+|.|||+||||+||+++||||+||.+||... .. ...+.+++||++++.|.||.
T Consensus 214 l~~~----~~~slv~~~l~TGR~HQIRvhla~lG~PI~GD~~Yg~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~ 289 (325)
T 1v9f_A 214 MEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 289 (325)
T ss_dssp EEEC----SSEEEEEEEESCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTT
T ss_pred eEEc----CCeEEEEEEECCCCcHHHHHHHHhCCCceeCChhhCCccccccccchhhhhhccCCcChhhheeeeEeeCCC
Confidence 9875 578999999999999999999999999999999999651 10 11246899999999999998
Q ss_pred Ccccccc
Q psy8199 231 NNLKLKW 237 (965)
Q Consensus 231 ~~~~~~~ 237 (965)
++....+
T Consensus 290 ~~~~~~~ 296 (325)
T 1v9f_A 290 SGIEMEW 296 (325)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 8766543
No 38
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=7e-42 Score=349.63 Aligned_cols=202 Identities=33% Similarity=0.527 Sum_probs=170.8
Q ss_pred ccEEEecCcEEEEECCCCCeeeeCCC-CCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHH
Q psy8199 29 LDIIYEDNEIIILNKSAGLVVHPAIG-NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (965)
Q Consensus 29 ~~i~~e~~~~lv~nKP~G~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~ 107 (965)
++|+|||++|+|+|||+|++||++.+ ....++.+.+...++ ++.+|||||++||||||||||++++++|+++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~~------~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f 85 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHRLDMATSGVIVVALTKAAERELKRQF 85 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT------TCEESSCCCTTCEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHCC------CCceeecCCCCCeEEEEEEeCHHHHHHHHHHH
Confidence 78999999999999999999998764 345689998877764 67899999999999999999999999999999
Q ss_pred HcCCcCeEEEEEEcCccCCC-ceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCc-EEEEEEEeCCCccc
Q psy8199 108 KMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKH-ISLIRCNLKTGRTH 185 (965)
Q Consensus 108 ~~~~~~K~Y~a~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~s~~~~~~~tGr~h 185 (965)
++++++|+|+|+|.|.++++ +.++.++..+........+.. .+++.+.|.|+++... .+ .|+++|+|.|||+|
T Consensus 86 ~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~v~~-~~gk~a~t~~~vl~~~----~~~~slv~~~l~TGR~H 160 (217)
T 2i82_A 86 REREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-ETGKPAQTEYEVVEYA----ADNTARVVLKPITGRSH 160 (217)
T ss_dssp HTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECT-TTCBCCEEEEEEEEEE----TTTEEEEEEEESSCCTT
T ss_pred HhCCeeEEEEEEEecccCCCCcEEecceeecCCCCcEEEEeC-CCCcEEEEEEEEEEEC----CCCeEEEEEEECCCCcH
Confidence 99999999999999998754 778888876654444444442 4789999999999875 34 89999999999999
Q ss_pred HHHHHHHHhCCceecCCCCCcccccccccccccccccccccccccCcccccccccCCCc
Q psy8199 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244 (965)
Q Consensus 186 QIR~~~~~~g~pi~gD~~~~~~~~~~~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~ 244 (965)
|||+||+++||||+||.+||..... ....+++||++++.|.||.++....+ ..|++
T Consensus 161 QIR~hla~lG~PIvGD~~Yg~~~~~-~~~~r~~LHa~~l~f~hP~~~~~~~~--~ap~p 216 (217)
T 2i82_A 161 QLRVHMLALGHPILGDRFYASPEAR-AMAPRLLLHAEMLTITHPAYGNSMTF--KAPAD 216 (217)
T ss_dssp HHHHHHHHTTCCBTTCTTTSCHHHH-HTCSSCCEEEEEEEEECTTTCCEEEE--ECCCC
T ss_pred HHHHHHHHCCCcEECccccCCcccc-CCCCCceeeeeEeEEcCCCCCCEEEE--EecCC
Confidence 9999999999999999999965321 12368899999999999998876654 35543
No 39
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=2.9e-40 Score=376.65 Aligned_cols=361 Identities=27% Similarity=0.485 Sum_probs=296.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|++|+|+.+++|++++||.+|++.+|+.++++...+.+ ..++.+...+++++++++++ .++++|++||++
T Consensus 32 ~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~gg~~ 108 (397)
T 2ord_A 32 SWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLSKNTF--GGKVFFANTGTE 108 (397)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHHHTTT--SCEEEEESSHHH
T ss_pred CEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998764432 23567889999999999984 689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++.. +.+++++||+++++|||....++...+...+...+.+...++..+|.
T Consensus 109 a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----------------- 170 (397)
T 2ord_A 109 ANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF----------------- 170 (397)
T ss_dssp HHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-----------------
T ss_pred HHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-----------------
Confidence 999999988765322 22356789999999999987666555543333334444445555554
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|+++++ +++++|+++| ++|++|.+.++.+++++|.++|++||+++|+||+|+||+++|..+..+.+++.||
T Consensus 171 ~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (397)
T 2ord_A 171 NNVEDLRRKMS---EDVCAVFLEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD 246 (397)
T ss_dssp TCHHHHHHHCC---TTEEEEEECS-EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred CCHHHHHHHhh---cCeEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC
Confidence 26788888875 4689999999 9999998777899999999999999999999999999999887666677788899
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||++++| +|+|+++++++++ .+.. ..++.|+++|+++++++.++|+.+.++++.++++++++++.+.|
T Consensus 247 ~~s~sK~~~~G-~r~G~~~~~~~~~-~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 318 (397)
T 2ord_A 247 VLTTAKGLGGG-VPIGAVIVNERAN-VLEP------GDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL 318 (397)
T ss_dssp EEEECGGGGTT-SCCEEEEECSTTC-CCCT------TSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCC-cCeEEEEEchHhc-ccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999987 7999999998876 5542 23667899999999999999998877778999999999999999
Q ss_pred Hccc-CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++. ..+.+..+++.|.++.+++. .+ .....+.+.|.++||++.+.+ +.+||+|++..++++++++++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 319 QEMKEEYDVVADVRGMGLMIGIQFR-EE-----VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEEC-TT-----SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEEEEEeEEEEEEEC-Ch-----HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 8763 45655567888999988875 11 114467888889999999874 7999999999999999999998876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
.+
T Consensus 393 ~l 394 (397)
T 2ord_A 393 VL 394 (397)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 40
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=100.00 E-value=1.1e-40 Score=370.90 Aligned_cols=318 Identities=18% Similarity=0.304 Sum_probs=273.3
Q ss_pred CHHHHHHHHHhhhc-ccccHHHHHHhcCC----CchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCc
Q psy8199 630 NKNEIQHMTSAIFQ-TFNELDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTH 704 (965)
Q Consensus 630 t~~~i~~~~~~l~~-~~~~~~e~l~l~~~----~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~ 704 (965)
+...++++++++.+ ...+.++++.|++. ++..|..+|+.+|++++ |+.++++.+|++ |++|+++|.||++++.
T Consensus 6 ~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~~i~~-t~~C~~~C~fC~~~~~ 83 (350)
T 3t7v_A 6 ALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYF-GNRVFLNCFIYF-STYCKNQCSFCYYNCR 83 (350)
T ss_dssp ------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEE-ECCCCCCCTTCTTCTT
T ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHC-CCEEEEEEeeec-CCCcCCCCCcCCCcCc
Confidence 34445667777654 57889999999965 34678899999988888 899999999999 9999999999999875
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHH
Q psy8199 705 YNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 705 ~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
. ...+|+ +++++|+++++++.+.|+++++|++|++|....+.+++.++++.+++ .++.++++.+.++++.++.|++
T Consensus 84 ~--~~~~~~-ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~L~~ 160 (350)
T 3t7v_A 84 N--EINRYR-LTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKARE 160 (350)
T ss_dssp S--CCCCCB-CCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHHHHH
T ss_pred C--CCCcee-CCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHHHHH
Confidence 3 344566 89999999999999999999999888755322246889999999986 5788999999999999999999
Q ss_pred hCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 784 VGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 784 aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
+|++++.+++|| ++++++++++++++++++++++.++++|+++++++|+|+|||.+|+.++++++++++ ++.+++++
T Consensus 161 aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~--~~~v~~~~ 238 (350)
T 3t7v_A 161 KGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTND--PDMVRVMT 238 (350)
T ss_dssp TTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTC--CSEEEEEE
T ss_pred cCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCC--CCEEEecc
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEee---CCc----cccC---
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFY---GDK----LLTT--- 932 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~---g~~----~~t~--- 932 (965)
|+|.||||+++.++.+.+++++++|++|+++|+. +|+++|...+.+.++.+|.+|||+++. .++ +...
T Consensus 239 f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~--~I~a~~~~~g~~~~~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~ 316 (350)
T 3t7v_A 239 FLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKR--LIPASLDLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRD 316 (350)
T ss_dssp CCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTS--BCEEEHHHHHHHHHHHHHHTTCCEEEEECCSSCCCCCSSCTTTT
T ss_pred eeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCc--CccccccccChhHHHHHHhcCCceecCCCCCCCCCCCCCCCccc
Confidence 9999999999998999999999999999999985 778889888888899999999997552 221 1111
Q ss_pred ---CCCCChhhHHHHHHcCCCcchhhh
Q psy8199 933 ---DNTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 933 ---~~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.+.+.++..++|+++|+.|++|+.
T Consensus 317 ~~~~~~~~~~~~~~i~~~G~~~~~r~~ 343 (350)
T 3t7v_A 317 LEERDRDIKSVVRRLEIMGMKPARQAD 343 (350)
T ss_dssp CSSCCCCHHHHHHHHHHHTCEECCHHH
T ss_pred chhccCCHHHHHHHHHHcCCccccHHH
Confidence 124678999999999999999975
No 41
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=100.00 E-value=8.1e-40 Score=366.00 Aligned_cols=311 Identities=56% Similarity=0.981 Sum_probs=279.0
Q ss_pred ccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHH
Q psy8199 646 NELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725 (965)
Q Consensus 646 ~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~ 725 (965)
.+.+++..|++.++.+|+..|+++++++|+|+.+.++..+++.|++|+++|.||.++..+.....+++.+++++|+++++
T Consensus 30 ls~~e~~~l~~~~~~~L~~~A~~~~~~~~~~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~ 109 (369)
T 1r30_A 30 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 109 (369)
T ss_dssp CCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHhccHHHHHHHHHHHHHHhcCCCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHH
Confidence 44455666666678899999999999998678899999999769999999999998875433334566689999999999
Q ss_pred HHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC
Q psy8199 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS 805 (965)
Q Consensus 726 ~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~ 805 (965)
.+.+.|++.|+|++|+..+...+.+++.++++.+++.++.+++++|.++++.++.|+++|++++++++||+++.++++++
T Consensus 110 ~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~~e~~~~i~~ 189 (369)
T 1r30_A 110 KAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIIT 189 (369)
T ss_dssp HHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHCC
T ss_pred HHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCCHHHHHHhCC
Confidence 99999999999988752223356899999999999989999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHH
Q psy8199 806 TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 885 (965)
Q Consensus 806 ~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ 885 (965)
.+++++++++++.++++|+.+++++|+|++||.+++.++++++++++..++.++++.|+|.|||||++.++++.++++++
T Consensus 190 ~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~ 269 (369)
T 1r30_A 190 TRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 269 (369)
T ss_dssp SSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999996336799999999999999998888999999999
Q ss_pred HHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchhhh
Q psy8199 886 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 886 ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
++++|+++|+..++++++|..++.+.+..++.+|||+++.|++++|++|.+.+++.++++++|+.|.++..
T Consensus 270 ~~~~r~~l~~~~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~g~~~~~~~~ 340 (369)
T 1r30_A 270 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAV 340 (369)
T ss_dssp HHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCCC-
T ss_pred HHHHHHhCCCCceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHHcCCCeecccc
Confidence 99999999998899999999888888899999999999999999999998899999999999999987764
No 42
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=1.5e-40 Score=342.50 Aligned_cols=198 Identities=35% Similarity=0.492 Sum_probs=164.9
Q ss_pred cEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHc
Q psy8199 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKM 109 (965)
Q Consensus 30 ~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~ 109 (965)
+|+|||++|+|+|||+|++||++.+. ..++.+.+...++. ...+++|||||++||||||||||+++++.|+++|++
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~~-~~~l~~~l~~~~~~---~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~ 78 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 78 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSS-BCCHHHHHHHHSTT---CSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEECCCEEEEECCCCCeEecCCCh-HHHHHHHHHHHcCC---CCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHh
Confidence 58999999999999999999987653 56788887766541 236789999999999999999999999999999999
Q ss_pred CCcCeEEEEEEcCccCC-CceEeeccccCCCC--CeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccH
Q psy8199 110 HIVQRKYLAMVWGIPKL-NGMINAAIMRNPHN--RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186 (965)
Q Consensus 110 ~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQ 186 (965)
++++|+|+|+|.|.+++ ++.++.++..+... ...+.+. .+++.+.|.|+++... .+.|+++|+|.|||+||
T Consensus 79 ~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~~--~~gk~a~t~~~vl~~~----~~~slv~~~l~TGR~HQ 152 (228)
T 1v9k_A 79 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS--QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQ 152 (228)
T ss_dssp TCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEEC--TTSBCCCEEEEEEEEC----SSEEEEEEEESSCCTTH
T ss_pred CCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEEC--CCCcEEEEEEEEEEEc----CCeEEEEEEECCCCchH
Confidence 99999999999999875 47788888765322 2233332 4789999999999875 66899999999999999
Q ss_pred HHHHHHHhCCceecCCCCCccc-c-----cccccccccccccccccccccCcccccc
Q psy8199 187 IRVHMQWLGHGIVGDNLYGKKY-S-----KSLIFNRQALHAYKLGLIHPKNNLKLKW 237 (965)
Q Consensus 187 IR~~~~~~g~pi~gD~~~~~~~-~-----~~~~~~~~~Lha~~l~f~~p~~~~~~~~ 237 (965)
||+||+++||||+||.+||... . ......+++||++++.|.||.++....+
T Consensus 153 IR~hla~lG~PI~gD~~YG~~~~~~~~~~~~~~~~r~~LHa~~l~f~hP~t~~~~~~ 209 (228)
T 1v9k_A 153 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 209 (228)
T ss_dssp HHHHHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEE
T ss_pred HHHHHHHCCCcEecCcccCCccccchhhcccCCCCChhhccceeEeeCCCCCCEEEE
Confidence 9999999999999999999631 1 1123568999999999999988776554
No 43
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.5e-38 Score=362.18 Aligned_cols=355 Identities=27% Similarity=0.446 Sum_probs=292.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|+.|||+.++.|++++||.+|++.+|+.++++...+.+ ..+..+...+++++++++++.+.+++++++||++
T Consensus 37 ~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~ 115 (395)
T 1vef_A 37 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTE 115 (395)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHH
T ss_pred CEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHH
Confidence 899999999999999999999999999999999999998754432 2356788999999999999766789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.++++++.+ .++++||+++++||+....++...+...+...+.+...++..++.
T Consensus 116 a~~~al~~~~~~------~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----------------- 172 (395)
T 1vef_A 116 ANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY----------------- 172 (395)
T ss_dssp HHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----------------
T ss_pred HHHHHHHHHHHH------hCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----------------
Confidence 999999987644 256789999999999877666655533222223333334444443
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|+++++ +++++|+++| +++++|.+.++++++++|.++|++||+++|+||+|+||++.|..+.++.+++.||
T Consensus 173 ~d~~~l~~~i~---~~~~~v~~~~-~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d 248 (395)
T 1vef_A 173 NDVEALKRAVD---EETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 248 (395)
T ss_dssp TCHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred CcHHHHHHHhc---cCEEEEEEeC-ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC
Confidence 36788888885 4689999999 8889999889999999999999999999999999999998887766777788899
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||++++| +|+|++++++++++.+.. ..++++++.|+++++++.++|+.+.++++.++++++++++.+.|
T Consensus 249 ~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l 321 (395)
T 1vef_A 249 ILTLAKALGGG-VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL 321 (395)
T ss_dssp EEEECGGGGTT-SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCC-CceEEEEehHHHHhhhcc------CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999987 899999999998887754 13567889999999999999998876678899999999999999
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++.. +.+..+++.|.++.+.+. .+ ...+.+.|. ++||++.+.+ +++||++++..++++++++++++.+
T Consensus 322 ~~~~~-~~~~~~~~~g~~~~~~~~-~~-------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (395)
T 1vef_A 322 RAIPS-PKIREVRGMGLMVGLELK-EK-------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRA 392 (395)
T ss_dssp HTSCC-TTEEEEEEETTEEEEEES-SC-------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHhhc-CceEEEEEEEEEEEEEEc-Ch-------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 87632 444556778888888875 11 345778888 9999999864 7999999999999999999998865
Q ss_pred c
Q psy8199 644 T 644 (965)
Q Consensus 644 ~ 644 (965)
.
T Consensus 393 ~ 393 (395)
T 1vef_A 393 V 393 (395)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=100.00 E-value=6.5e-37 Score=341.30 Aligned_cols=313 Identities=20% Similarity=0.316 Sum_probs=272.1
Q ss_pred HHHHHHhhhcccccHHHHHHhcCCC----chhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCc
Q psy8199 634 IQHMTSAIFQTFNELDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709 (965)
Q Consensus 634 i~~~~~~l~~~~~~~~e~l~l~~~~----~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~ 709 (965)
++++++++.+...+.+|++.|++.+ +.+|...|++++++++ |+.++++.+|++ |++|+++|.||.++.. ....
T Consensus 3 ~~~i~~k~~~~~l~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~~~-g~~v~~~~~i~~-t~~C~~~C~fC~~~~~-~~~~ 79 (348)
T 3iix_A 3 GREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYCGLRRD-NKNL 79 (348)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CSEEEEEEEEEE-ECCCSCCCTTCTTCTT-CCSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc-CCEEEEEEEeEe-cCCcCCcCccCCCCCC-CCCc
Confidence 4556666655667889999998553 4568889999988888 899999999999 9999999999998764 3333
Q ss_pred ccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 710 ~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+++ +++++|+++++++.+.|++.|+|++|++| ....+++.++++.+++.++.++++.+.++++.++.|+++|++.+
T Consensus 80 ~~~~-ls~eei~~~i~~~~~~g~~~i~~~gGe~p--~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~~v 156 (348)
T 3iix_A 80 KRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDP--YXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRY 156 (348)
T ss_dssp CCCB-CCHHHHHHHHHHHHHTTCSEEEEEESCCG--GGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCCEE
T ss_pred Ccee-CCHHHHHHHHHHHHHCCCCEEEEEeCCCC--CccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCCEE
Confidence 4555 89999999999999999999999988745 34468899999999988899999999999999999999999999
Q ss_pred eccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.+++|| +++.++.+++.+++++++++++.++++|+.+++++|+|+ +||.+++.++++++++++ ++.+++++|+|.|
T Consensus 157 ~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~--~~~i~i~~~~p~~ 234 (348)
T 3iix_A 157 LLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHP 234 (348)
T ss_dssp ECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHT--CSEECCEECCCCT
T ss_pred eeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcC--CCEEeeeeeecCC
Confidence 999999 899999999999999999999999999999999999999 799999999999999999 8999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeC--------------CccccCC
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG--------------DKLLTTD 933 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g--------------~~~~t~~ 933 (965)
|||+++.++.+.++++++++++|+++|+..|+++++|..++++.++.++.+|||+++.. ++..+..
T Consensus 235 gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~~~~~~ 314 (348)
T 3iix_A 235 DTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFE 314 (348)
T ss_dssp TSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCCTTTTS
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcCHHHHHHHHhcCCcEEeCCCCchhcccccccCCCCcccCC
Confidence 99999999999999999999999999999899999998888899999999999999821 1111222
Q ss_pred C--CCChhhHHHHHHcCCCcchh
Q psy8199 934 N--TKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 934 ~--~~~~~~~~~~~~~g~~~~~~ 954 (965)
+ .+.++...+++..|+.|...
T Consensus 315 ~~~~~~~~~~~~~~~~g~~~~~~ 337 (348)
T 3iix_A 315 KDTACIPCVMKMIELLGRKPGRD 337 (348)
T ss_dssp CTTCHHHHHHHHHHHTTCEECSS
T ss_pred CchhhHHHHHHHHHHcCCEeCCC
Confidence 1 23567788889999887654
No 45
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=9.6e-37 Score=344.82 Aligned_cols=354 Identities=30% Similarity=0.503 Sum_probs=285.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|+.|||+.++.+++++||.+|++.+++.++++...+.. ..++++...++++.++++++. .+++++++||++
T Consensus 20 ~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~~g~-~~~v~~~~g~t~ 97 (375)
T 2eh6_A 20 VYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLVKHFWT-EGKVFFANSGTE 97 (375)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHHHTSSS-CEEEEEESSHHH
T ss_pred CEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHHhhcCC-CCeEEEeCchHH
Confidence 899999999999999998888999999999999999987753322 245667788999999999864 389999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.++++++.+.. ++.+++++|++.+++||++...+...++...+...+.+...++..+|.
T Consensus 98 a~~~~~~~~~~~~~-~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 159 (375)
T 2eh6_A 98 SVEAAIKLARKYWR-DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL----------------- 159 (375)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----------------
T ss_pred HHHHHHHHHHHHhc-cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----------------
Confidence 99999997654421 123456899999999999987776666543322223333344555443
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|+++++ +++++|+++| ++|++|.+.++++++++|.++|++||+++|+||+|++||+.+..+..+.++..+|
T Consensus 160 ~d~~~l~~~l~---~~~~~v~~~~-~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d 235 (375)
T 2eh6_A 160 NDIDSVYKLLD---EETAGIIIEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD 235 (375)
T ss_dssp TCHHHHHTTCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred chHHHHHHHhc---CCeEEEEEeC-ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCC
Confidence 26788887774 4689999999 9999999989999999999999999999999999999998886666777788899
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||.+++| +++|++++++++++.+.. ..++.+++.++++++++.++|+.+. +..++++++++++.+.|
T Consensus 236 ~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L 306 (375)
T 2eh6_A 236 VIALAKGLGGG-VPIGAILAREEVAQSFTP------GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKL 306 (375)
T ss_dssp EEEECGGGGTT-SCCEEEEEEHHHHTTCCT------TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCC-CCeEEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999987 799999999998877654 2356788899999999999998776 67888999999999999
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+++. . ..+++.|.++.+++. .+ ...+.+.|.++||.+.+. .+++|+++++..++++++++++++.+.
T Consensus 307 ~~~~---~-~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 307 KELG---K-GKVKGRGLMLGLELE-RE-------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHTT---S-SEEEEETTEEEEECS-SC-------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHh---c-CCceEEEEEEEEEEc-Cc-------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8752 1 355678888888774 11 235778888999999986 479999999999999999999988653
No 46
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=6.2e-35 Score=291.64 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=123.3
Q ss_pred CccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHH
Q psy8199 28 KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (965)
Q Consensus 28 ~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~ 107 (965)
+..|+|||++|+|+|||+|++||+.++....++.+.+. .+++++|||||++||||||||||+++++.|+++
T Consensus 3 ~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~--------~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~- 73 (189)
T 2oml_A 3 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP- 73 (189)
T ss_dssp -----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC--------CSSCEESSCCCTTCEEEEEEESCHHHHHHHHST-
T ss_pred ccccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC--------CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCc-
Confidence 45689999999999999999999988765667765543 137899999999999999999999999999995
Q ss_pred HcCCcCeEEEEEEcCccCCC--ceEeeccccCCCCC--eeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCc
Q psy8199 108 KMHIVQRKYLAMVWGIPKLN--GMINAAIMRNPHNR--IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183 (965)
Q Consensus 108 ~~~~~~K~Y~a~v~g~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr 183 (965)
.++++|+|+|+|.|.++++ +.+..++..+.... ....... .....+.|.|+++... ..++|+++|+|.|||
T Consensus 74 -~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~t~~~v~~~~---~~~~slv~~~l~TGR 148 (189)
T 2oml_A 74 -GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-EPAWLWPRNPPIRERK---SIPTSWLKITLYEGR 148 (189)
T ss_dssp -TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-CCTTCCCCSSCCC-CT---TSCEEEEEEEESCCC
T ss_pred -cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEec-cccccccccccccccc---CCCcEEEEEEEeeCC
Confidence 7899999999999998754 24555554321111 1111111 1112335666666542 236899999999999
Q ss_pred ccHHHHHHHHhCCceecCCCCCcc
Q psy8199 184 THQIRVHMQWLGHGIVGDNLYGKK 207 (965)
Q Consensus 184 ~hQIR~~~~~~g~pi~gD~~~~~~ 207 (965)
+||||+||+++||||+||.+||..
T Consensus 149 ~HQIRvhla~lG~PI~gD~~Y~~g 172 (189)
T 2oml_A 149 NRQVRRMTAHVGFPTLRLIRYAMG 172 (189)
T ss_dssp TTHHHHHHHHTTCCEEEEEEEEET
T ss_pred CHHHHHHHHHcCCcCcceEEEEEC
Confidence 999999999999999999999843
No 47
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.98 E-value=1.2e-33 Score=287.38 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=116.6
Q ss_pred CCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHH
Q psy8199 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVN 105 (965)
Q Consensus 26 ~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~ 105 (965)
...+.|+|||++|+|+|||+|++||+.++....++.+.+. .+++.+|||||++||||||||||+++++.|++
T Consensus 29 ~~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~--------~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~ 100 (217)
T 2olw_A 29 STRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 (217)
T ss_dssp --------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC--------CCSCEESSCCCTTCEEEEEEESCHHHHHHHHC
T ss_pred cccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC--------cCCceECCCCCCCCeeEEEEEcCHHHHHHHHc
Confidence 3467899999999999999999999987765667766543 13688999999999999999999999999999
Q ss_pred HHHcCCcCeEEEEEEcCccCCC--ceEeeccccCCCC--CeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCC
Q psy8199 106 QLKMHIVQRKYLAMVWGIPKLN--GMINAAIMRNPHN--RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181 (965)
Q Consensus 106 ~~~~~~~~K~Y~a~v~g~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~t 181 (965)
+ .++++|+|+|+|.|.++++ +.+..++..+... .....+.. ..+.+.+.+.++... ...++|+++|+|.|
T Consensus 101 ~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~~~v~~~--~~~~~slv~~~l~T 174 (217)
T 2olw_A 101 P--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD--EPAWLWPRNPPIRER--KSIPTSWLKITLYE 174 (217)
T ss_dssp T--TCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC--CCTTCCCCSSCCC-C--CSSCEEEEEEEESC
T ss_pred c--cccCCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEec--CCccccccccceecc--CCCCcEEEEEEECc
Confidence 4 7889999999999998754 2444444322110 01111110 000011111111111 12468999999999
Q ss_pred CcccHHHHHHHHhCCceecCCCCCcc
Q psy8199 182 GRTHQIRVHMQWLGHGIVGDNLYGKK 207 (965)
Q Consensus 182 Gr~hQIR~~~~~~g~pi~gD~~~~~~ 207 (965)
||+||||+||+++||||+||.+||..
T Consensus 175 GRtHQIRvhla~lG~PIvgD~rY~~g 200 (217)
T 2olw_A 175 GRNRQVRRMTAHVGFPTLRLIRYAMG 200 (217)
T ss_dssp CCTTHHHHHHHHTTCCEEEEEEEEET
T ss_pred CCCHHHHHHHHHCCCcEeCCEEEEEC
Confidence 99999999999999999999999843
No 48
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.98 E-value=1.1e-31 Score=307.92 Aligned_cols=344 Identities=14% Similarity=0.091 Sum_probs=253.9
Q ss_pred eEEEecC--CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy8199 246 SKLITFS--GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~d--G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ 321 (965)
+++||.+ |++|||+..+ .+..+.+|+|++|+.++++...+. ......+...++++.+.+.++ ...++|+|++
T Consensus 51 ~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~ 126 (421)
T 3l8a_A 51 TYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFG-YNYFNDDLYQAVIDWERKEHDYAVVKEDILFID 126 (421)
T ss_dssp BTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSS-CBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcC-CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcC
Confidence 8899999 8999999766 334458999999999999764221 122346778889999988876 4567899999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNS 399 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 399 (965)
||+||++.|++++.. ++++|++.+++||++...+...+. .+..+|.. +....
T Consensus 127 g~~ea~~~a~~~~~~--------~gd~Vi~~~~~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~----- 180 (421)
T 3l8a_A 127 GVVPAISIALQAFSE--------KGDAVLINSPVYYPFARTIRLNDH-------------RLVENSLQIINGRFE----- 180 (421)
T ss_dssp CHHHHHHHHHHHHSC--------TEEEEEEEESCCHHHHHHHHHTTE-------------EEEEEECEEETTEEE-----
T ss_pred CHHHHHHHHHHHhcC--------CCCEEEECCCCcHHHHHHHHHCCC-------------EEEeccccccCCCee-----
Confidence 999999999998742 568899999999998654443322 12233321 10000
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc-
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC- 477 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~- 477 (965)
.|+++|++++.+ +++++|++++ ++|++|. .++++++++|+++|++||+++|+||+|++|+++|.. ..+
T Consensus 181 ------~d~~~le~~i~~--~~~~~vil~~-p~nptG~-~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 250 (421)
T 3l8a_A 181 ------IDFEQLEKDIID--NNVKIYLLCS-PHNPGGR-VWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLN 250 (421)
T ss_dssp ------CCHHHHHHHHHH--TTEEEEEEES-SBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred ------eCHHHHHHHhhc--cCCeEEEECC-CCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHH
Confidence 268899999863 4678888888 8999994 557888999999999999999999999999988752 122
Q ss_pred ----cccCCCcceeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--cc
Q psy8199 478 ----EHAEIWPDFLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DN 549 (965)
Q Consensus 478 ----~~~~~~pDivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~ 549 (965)
+..+..+++.++||+++ +| +|+|+++++ +++++.+... ..+.+++++|+++++++.++|+..++ ++
T Consensus 251 ~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~-----~~~~~~~~~n~~~~~a~~aal~~~~~~~~~ 324 (421)
T 3l8a_A 251 TLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYR-----QLANNQHEVPTVGMIATQAAFQYGKPWLEE 324 (421)
T ss_dssp GSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred HcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHH-----HHhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence 22344567788999997 56 899999998 8888887651 11345668999999999999985321 34
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNT 620 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~ 620 (965)
..++++++.+++.+.|+++ |++..+++.|.++. +++. ..+. ....+.+.|+ ++||++.++ .++
T Consensus 325 ~~~~~~~~~~~l~~~L~~~---~~i~~~~~~~~~~~~v~~~-~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~ 396 (421)
T 3l8a_A 325 LKTVIEGNIKLVIKELEAK---TKIKVMEPEGTYLVWLDFS-AYAI----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYF 396 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CSCEEECCSBSSEEEEECG-GGTC----CTTHHHHHHHHTTCEECEEGGGGCGGGTTE
T ss_pred HHHHHHHHHHHHHHHHHhC---CCceEeCCCeeEEEEEecc-ccCC----CHHHHHHHHHHhCCEEEECchhhCCCCCCE
Confidence 5566667777777777654 67778888888776 6654 1111 1235667776 569999873 379
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+||+++ .++++++++++++.+++
T Consensus 397 iRi~~~--~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 397 ARLNVA--TPKNTVQEALSRIISVF 419 (421)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHH
Confidence 999977 68999999999987654
No 49
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=1.6e-29 Score=290.42 Aligned_cols=333 Identities=14% Similarity=0.076 Sum_probs=250.9
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhccc-cc---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEH-VM---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~-~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++| ||++||||.++ .++| |.+|++.+|+.++++..+. +. ...+.++...++++.++++++ .++++++
T Consensus 57 ~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~ 130 (427)
T 2w8t_A 57 TEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG--TTGAIVF 130 (427)
T ss_dssp TEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC--CCceEEe
Confidence 79999 99999999988 3689 6899999999999887321 11 122356888999999999995 5688999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++++. .+++.|++. ..+|++...++...+. .+..+|.
T Consensus 131 ~sGs~a~~~al~~l~--------~~gd~vl~~-~~~h~~~~~~~~~~g~------------~~~~~~~------------ 177 (427)
T 2w8t_A 131 STGYMANLGIISTLA--------GKGEYVILD-ADSHASIYDGCQQGNA------------EIVRFRH------------ 177 (427)
T ss_dssp SCHHHHHHHHHHHHS--------CTTCEEEEE-TTCCHHHHHHHHHSCS------------EEEEECT------------
T ss_pred cCcHHHHHHHHHHhc--------CCCCEEEEC-CcccHHHHHHHHHcCC------------eeEEeCC------------
Confidence 999999999988762 134555554 4566654444333321 2223332
Q ss_pred hHHHHHHHHHHHHHHHhCCC-cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC--Ccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN-KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~-~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~ 477 (965)
+|+++|++++++..+ ++++|+++| ++|++|.+.+ +++|+++|++||+++|+||+|+++ +++|.. ..
T Consensus 178 -----~d~~~le~~l~~~~~~~~~~v~~~~-~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~ 246 (427)
T 2w8t_A 178 -----NSVEDLDKRLGRLPKEPAKLVVLEG-VYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VY 246 (427)
T ss_dssp -----TCHHHHHHHHHTSCSSSCEEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HH
T ss_pred -----CCHHHHHHHHHhccCCCCeEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hH
Confidence 478899999976433 689999999 8999999887 999999999999999999999964 333333 44
Q ss_pred cccCCCcc----eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHH
Q psy8199 478 EHAEIWPD----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 552 (965)
Q Consensus 478 ~~~~~~pD----ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~ 552 (965)
+++++.|| +.+|||+++ .+.|++++++++++.+... ..++ ..|++.|+++++++.++|+.++. ++..+
T Consensus 247 ~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~~--~~~~--~~~~~~~~~~~aa~~~al~~~~~~~~~~~ 319 (427)
T 2w8t_A 247 EAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRLA--CRPY--IFTASLPPSVVATATTSIRKLMTAHEKRE 319 (427)
T ss_dssp HHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGGT--CHHH--HSSCCCCHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHHh--cccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 55777666 568999985 3669999999998887651 1122 24667899999999999998865 56889
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-ec-eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEE
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-RQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVY 622 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR 622 (965)
+++++++++.+.|+++ ++... .+ .|.++.+.+. + ......+.+.|.++||++.+.. +++|
T Consensus 320 ~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 389 (427)
T 2w8t_A 320 RLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLE--D----QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLR 389 (427)
T ss_dssp HHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEES--S----HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEE
Confidence 9999999999999876 23322 34 6788888774 2 1224568889999999998742 4899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+++..+++++++++++++.+.+
T Consensus 390 i~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 390 CSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 50
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.97 E-value=4.9e-32 Score=281.09 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=130.7
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEe-cCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYE-DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e-~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 80 (965)
|++|++. ++.+...+...+ ........|+|| |++|+|+|||+|++||+.++. ..++.+.+...++ .++++|
T Consensus 30 V~VNG~~-v~~~~~~v~~gD-~I~v~~~~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~-----~~~~~v 101 (234)
T 1ksk_A 30 VTVDGEI-VRNAAFKLLPEH-DVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA-----WKLHAA 101 (234)
T ss_dssp EEETTEE-CCCTTCEECTTC-CEEETTEEECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCTTG-----GGCEES
T ss_pred EEECCEE-eCCCCCCCCCCC-EEEEeCeEeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhhhc-----CCeeEc
Confidence 4455655 433455554432 333334579999 999999999999999998764 6677776644332 368899
Q ss_pred ccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEcc-CCCCcceEEEE
Q psy8199 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYY 159 (965)
Q Consensus 81 ~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~ 159 (965)
||||++||||||||||++++++|.+ ++++++|+|+|+|.|.++++. ++.+.. . +.+.. ...++++. |
T Consensus 102 hRLD~~TsGlll~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~~-i~~~~~-g------~~~~~~~~~~~~a~--~ 169 (234)
T 1ksk_A 102 GRLDIDTTGLVLMTDDGQWSHRITS--PRHHCEKTYLVTLESPVADDT-AEQFAK-G------VQLHNEKDLTKPAV--L 169 (234)
T ss_dssp SCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH-HHHHHH-C------CCCTTCSSCCCCCE--E
T ss_pred CCCCCCCeeEEEEEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHHH-HHHHHC-C------eEECCCCcccceEE--E
Confidence 9999999999999999999999987 789999999999999987652 221110 0 00110 01345554 5
Q ss_pred EEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCC
Q psy8199 160 ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205 (965)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~ 205 (965)
+++. .|+++|+|.|||+||||+||+++||||+||..|+
T Consensus 170 ~~~~--------~s~~~~~l~tGR~HQIR~h~~~lG~pi~gd~ry~ 207 (234)
T 1ksk_A 170 EVIT--------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRER 207 (234)
T ss_dssp EEEE--------TTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred EEeC--------CeEEEEEEccCCCHHHHHHHHHcCCeEeeeEEEE
Confidence 6654 3899999999999999999999999999999996
No 51
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.97 E-value=1.9e-31 Score=277.83 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=129.8
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCc-EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNE-IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~-~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 80 (965)
|++|+++ ++.+...+...+ .+...+..|+|||++ |+|+|||+|++|++.++. ..++.+.+...++ .++++|
T Consensus 29 V~VNG~~-v~~~~~~v~~gD-~I~v~~~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~-----~~~~~v 100 (243)
T 1vio_A 29 VKINGEI-VKSGSVQISQED-EIYFEDELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPLA-----GKLHSA 100 (243)
T ss_dssp EEETTEE-CCCTTCEECTTS-CEEETTEECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTGG-----GGCEES
T ss_pred EEECCEE-eCCCCCCcCCCC-EEEEeccccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHHhc-----CCEeEc
Confidence 4556665 434555555433 344445679999999 999999999999988764 5677776644321 368899
Q ss_pred ccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEcc-CCCCcceEEEE
Q psy8199 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYY 159 (965)
Q Consensus 81 ~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~ 159 (965)
||||++||||||||||+++++++.. +++.++|+|+|+|.|.++++. ++.+.. . ..+.. ...++++. |
T Consensus 101 hRLD~~TsGlll~ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~~-i~~~~~-g------~~~~~~~~~~~~a~--~ 168 (243)
T 1vio_A 101 GRLDVDTTGLVLLTDDGQWSHRITS--PKHHCEKTYLVTLADPVEENY-SAACAE-G------ILLRGEKEPTKPAK--L 168 (243)
T ss_dssp SCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH-HHHHHH-C------CCCTTCSSCCCCCE--E
T ss_pred cCCCCCCeEEEEEEECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHHH-HHHHhC-C------eEECCCCccceeEE--E
Confidence 9999999999999999999888887 789999999999999987652 222110 0 00111 11356665 4
Q ss_pred EEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCC--CCCc
Q psy8199 160 ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN--LYGK 206 (965)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~--~~~~ 206 (965)
+++. .|+++|+|.|||+||||+||+++||||+||. .||.
T Consensus 169 ~~l~--------~sl~~~~l~tGR~HQIR~hl~~lG~pI~gd~r~~~G~ 209 (243)
T 1vio_A 169 EILD--------DYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGD 209 (243)
T ss_dssp EECS--------SSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEeC--------CEEEEEEEccCCcHHHHHHHHHCCCeEcccEEEEECC
Confidence 5543 4899999999999999999999999999999 5564
No 52
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=4.9e-28 Score=275.76 Aligned_cols=334 Identities=15% Similarity=0.185 Sum_probs=250.0
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhccccc----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++| +|++|||+.++ +++| |.+|++.+++.+++++..+.. ...+..+...++++.++++++ .++.+++
T Consensus 36 ~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--~~~~i~~ 109 (399)
T 3tqx_A 36 AEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG--TDDTILY 109 (399)
T ss_dssp SEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC--CCcEEEE
Confidence 79999 99999999987 6789 789999999999988743211 112356778999999999985 4567777
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+. .+++.|++.+++|.++ ..+....+. .+..+|.
T Consensus 110 ~sGt~a~~~~l~~~~--------~~gd~v~~~~~~~~~~-~~~~~~~g~------------~~~~~~~------------ 156 (399)
T 3tqx_A 110 SSCFDANGGLFETLL--------GPEDAIISDELNHASI-IDGIRLCKA------------QRYRYKN------------ 156 (399)
T ss_dssp SCHHHHHHTTHHHHC--------CTTCEEEEETTCCHHH-HHHHHSCCS------------EEEEECT------------
T ss_pred CchHHHHHHHHHHhc--------CCCCEEEECCcccHHH-HHHHHHcCC------------ceeEeCC------------
Confidence 889999999988663 2456677766655443 333333321 2233332
Q ss_pred hHHHHHHHHHHHHHHHhCCC---cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCC-Ccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGC-GRTGKFF 475 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~---~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~-gr~G~~~ 475 (965)
.|+++|++++++... ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+| .|+ ++.+. +
T Consensus 157 -----~d~~~l~~~l~~~~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~ 225 (399)
T 3tqx_A 157 -----NAMGDLEAKLKEADEKGARFKLIATDG-VFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR-G 225 (399)
T ss_dssp -----TCTTHHHHHHHHHHTTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-C
T ss_pred -----CCHHHHHHHHHhhhccCCCceEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-c
Confidence 245677777765422 688999999 8999999887 999999999999999999999 454 44433 2
Q ss_pred cccccCC--Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-h-ccc
Q psy8199 476 ACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-N-KDN 549 (965)
Q Consensus 476 ~~~~~~~--~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-~-~~~ 549 (965)
..+.+++ .+|++ ++||+++ | .+.|++++++++++.+... ...+ ..+.+.++++++++.++|+.+ + .++
T Consensus 226 ~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (399)
T 3tqx_A 226 TPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNR--SRPY--LFSNTVAPVIVATSLKVLELLKTEGPQ 299 (399)
T ss_dssp HHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHH--CHHH--HSSCCCCHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHh--Ccce--eccCCCcHHHHHHHHHHHHHHhhccHH
Confidence 4556666 78988 7999998 4 5789999999999888651 1112 234467899999999999977 3 356
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C-CEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-NTV 621 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-~~l 621 (965)
..++++++.+++.+.|+++ ++..+++.|.++.+.+. + ......+.+.|.++||++.+. + +++
T Consensus 300 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i 369 (399)
T 3tqx_A 300 LRKQLQENSRYFRAGMEKL----GFQLVPGNHPIIPVMLG--D----AQLATNMADHLLQEGIYVVGFSYPVVPMGKARI 369 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TCCBCCCSSSEEEEEEE--C----HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCcCCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceE
Confidence 7888999999999999876 34445778888888875 2 122457888999999999853 1 589
Q ss_pred EEeCCcccCHHHHHHHHHhhhccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++++..+++++++++++++.+.+
T Consensus 370 Ri~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 370 RVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 53
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=7.5e-28 Score=274.44 Aligned_cols=335 Identities=15% Similarity=0.179 Sum_probs=245.8
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccccc-cCC---CCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM-LSN---LTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++|.+|++|||+.++ +++|| .+|++.+|+.++++...... ... +..+...++.+.++++++. ++.+++
T Consensus 37 ~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~ 111 (401)
T 1fc4_A 37 ADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM--EDAILY 111 (401)
T ss_dssp SEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC--SEEEEE
T ss_pred ceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC--CcEEEe
Confidence 79999999999999988 46997 89999999999987643211 011 1267788999999999964 367778
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+.. +++.|++..+ +|+....+....+ ..+..++.
T Consensus 112 ~sGs~a~~~~~~~~~~--------~gd~v~~~~~-~~~~~~~~~~~~g------------~~~~~~~~------------ 158 (401)
T 1fc4_A 112 SSCFDANGGLFETLLG--------AEDAIISDAL-NHASIIDGVRLCK------------AKRYRYAN------------ 158 (401)
T ss_dssp SCHHHHHHTTHHHHCC--------TTCEEEEETT-CCHHHHHHHHTSC------------SEEEEECT------------
T ss_pred CChHHHHHHHHHHHcC--------CCCEEEEcch-hHHHHHHHHHHcC------------CceEEECC------------
Confidence 8899999999887632 3455665554 5554443333222 11223332
Q ss_pred hHHHHHHHHHHHHHHHhCCC---cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-Ccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFF 475 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~---~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~ 475 (965)
.|+++|++++++..+ ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|. |+ +++|..+
T Consensus 159 -----~d~~~l~~~l~~~~~~~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~ 228 (401)
T 1fc4_A 159 -----NDMQELEARLKEAREAGARHVLIATDG-VFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS 228 (401)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH
T ss_pred -----CCHHHHHHHHHHhhccCCCceEEEEeC-CcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc
Confidence 256788888864321 578888888 8999998887 9999999999999999999994 87 3456543
Q ss_pred cccccCCC--ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccH
Q psy8199 476 ACEHAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNI 550 (965)
Q Consensus 476 ~~~~~~~~--pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~ 550 (965)
.+.+++. .|++ ++||.++|+ +.|++++++++++.+.... . .+..+++.++++++++.++|+.+.. ++.
T Consensus 229 -~~~~~~~~~~di~~~s~sK~~~~~--~gG~~~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (401)
T 1fc4_A 229 -HEYCDVMGRVDIITGTLGKALGGA--SGGYTAARKEVVEWLRQRS--R--PYLFSNSLAPAIVAASIKVLEMVEAGSEL 301 (401)
T ss_dssp -HHHTTCTTCCSEEEEESSSTTCSS--SCEEEEECHHHHHHHHHHC--H--HHHHSCCCCHHHHHHHHHHHHHHHTCHHH
T ss_pred -HHHcCCCcCCcEEEecchhhccCC--CCEEEEcCHHHHHHHHHhC--c--CceeCCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 3334554 4777 789999775 3588999999988876511 1 1223668899999999999998753 567
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVY 622 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR 622 (965)
.++++++.+++.+.|+++ ++..+.+.|.++.+.+. + ......+.+.|.++||++.++. +++|
T Consensus 302 ~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iR 371 (401)
T 1fc4_A 302 RDRLWANARQFREQMSAA----GFTLAGADHAIIPVMLG--D----AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIR 371 (401)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCCBCCSSSSEEEEEEE--C----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHc----CCcccCCCCCEEEEEcC--C----hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEE
Confidence 888999999999999876 23333567888888875 2 1224468888999999998742 4799
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++..+++++++++++++.+.+
T Consensus 372 i~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 372 TQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHH
Confidence 99998899999999999887653
No 54
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.96 E-value=8.2e-28 Score=274.82 Aligned_cols=331 Identities=15% Similarity=0.131 Sum_probs=244.1
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccc----cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
.+++|.+|++||||.++ .++|+ .||+|++|+.+++++... +....+..+...+++++++++++ .+.++++
T Consensus 51 ~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i~~ 125 (409)
T 3kki_A 51 LVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--FDECLLS 125 (409)
T ss_dssp TTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--CSEEEEE
T ss_pred eeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--CCeEEEe
Confidence 56889999999999876 45676 589999999999987421 11122345667789999999984 5677888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+.. +++.|++.++ +|+....+....+. ....++.
T Consensus 126 ~sGt~a~~~~l~~~~~--------~gd~Vl~~~~-~~~~~~~~~~~~g~------------~~~~~~~------------ 172 (409)
T 3kki_A 126 QSGWNANVGLLQTICQ--------PNTNVYIDFF-AHMSLWEGARYANA------------QAHPFMH------------ 172 (409)
T ss_dssp SCHHHHHHHHHHHHCC--------TTCEEEEETT-SCHHHHHHHHHTTC------------EEEEECT------------
T ss_pred cchHHHHHHHHHHhcC--------CCCEEEECCC-cCHHHHHHHHHcCC------------eEEEecC------------
Confidence 9999999999987632 4566666555 45544443333321 1122222
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC--CCccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~ 478 (965)
+|+++|++++.+. +.++|++++ ++|++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. .
T Consensus 173 -----~d~~~le~~l~~~--~~~~vi~~~-~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~ 239 (409)
T 3kki_A 173 -----NNCDHLRMLIQRH--GPGIIVVDS-IYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-A 239 (409)
T ss_dssp -----TCHHHHHHHHHHH--CSCEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-H
T ss_pred -----CCHHHHHHHHHhc--CCeEEEECC-CCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-h
Confidence 3688999999753 248899999 9999998887 99999999999999999999998 887776544 4
Q ss_pred ccCC--Ccce--eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHH
Q psy8199 479 HAEI--WPDF--LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQR 553 (965)
Q Consensus 479 ~~~~--~pDi--vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~ 553 (965)
.+++ .+|+ .++||++++| .|++++++++++.+... ...+. .+.+.++++++++.++|+.+++ +.+.++
T Consensus 240 ~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~aa~~aal~~~~~~~~~~~~ 312 (409)
T 3kki_A 240 ELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFI--SYPAI--FSSTLLPYEAAGLETTLEIIESADNRRQH 312 (409)
T ss_dssp HHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHH--CHHHH--HSBCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHh--CcCcc--ccCCCcHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4555 4677 5789999875 48899999888877641 11122 2234689999999999998765 467788
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p 625 (965)
++++.+++.+.|+++ ++ .+.+.|.++.+.+. + ......+.+.|.++||++.+. .+++||++
T Consensus 313 ~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~ 381 (409)
T 3kki_A 313 LDRMARKLRIGLSQL----GL-TIRSESQIIGLETG--D----ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSL 381 (409)
T ss_dssp HHHHHHHHHHHHHTT----TC-CCCCSSSEEEEEEE--S----HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHc----CC-ccCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEc
Confidence 899999999999876 22 23367888888875 2 122446888899999998642 26899999
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+++++++++++++.+++
T Consensus 382 ~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 382 NSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 55
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.96 E-value=2.8e-28 Score=275.54 Aligned_cols=339 Identities=11% Similarity=0.024 Sum_probs=239.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSD 322 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~s 322 (965)
+|+||.+|++||||.+|. .+++ .+|+|.+|+.+++... ..+.. .+ .+....+++.+.+..+ .+.+++++++|
T Consensus 15 ~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g 89 (377)
T 3fdb_A 15 TMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPD 89 (377)
T ss_dssp CHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred CceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCC
Confidence 789999999999998873 4454 7999999999998763 33332 23 6677777777776554 35679999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|++|++.+++.+.. ++++|++..++||++.......+. .+..+|....
T Consensus 90 ~~~a~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~----------- 137 (377)
T 3fdb_A 90 VVRGLYIAIDHFTP--------AQSKVIVPTPAYPPFFHLLSATQR-------------EGIFIDATGG----------- 137 (377)
T ss_dssp HHHHHHHHHHHHSC--------TTCCEEEEESCCTHHHHHHHHHTC-------------CEEEEECTTS-----------
T ss_pred hHHHHHHHHHHhcC--------CCCEEEEcCCCcHhHHHHHHHcCC-------------EEEEccCCCC-----------
Confidence 99999999997732 567899999999997544333222 3344444321
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-c-c---ccc
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-K-F---FAC 477 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~-~---~~~ 477 (965)
.|+++|++++++. ..++++++| +|++|.+. +.+.+++|.++|++||+++|+||+|++|++.| . . ...
T Consensus 138 ---~d~~~l~~~l~~~--~~~v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 209 (377)
T 3fdb_A 138 ---INLHDVEKGFQAG--ARSILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD 209 (377)
T ss_dssp ---CCHHHHHHHHHTT--CCEEEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCH
T ss_pred ---CCHHHHHHHhccC--CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHc
Confidence 2688999998742 335555555 89999866 67779999999999999999999999988777 2 2 122
Q ss_pred cccCCCcceeeeccccCCCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRI 554 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~ 554 (965)
...+..+++.++||+++.+++++|++++ ++++++.+.. ..+..+++.|+++++++.++|+...+ +...+++
T Consensus 210 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 283 (377)
T 3fdb_A 210 TAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ------LSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYL 283 (377)
T ss_dssp HHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHH------SCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1223335566899999643389997665 7888888765 23445788999999999999975322 3456667
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-------CCEEEEeC
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------GNTVYLMP 625 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-------~~~lR~~p 625 (965)
+++.+++.+.|++. .|++..+.+.|.++ .+.+. ..+. . .++.+.++++ ||++.|+ .+++|+++
T Consensus 284 ~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~----~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~ 355 (377)
T 3fdb_A 284 KNNHDFLLHEIPKR--IPGAKITPMQATYLMWIDFR-DTTI-E----GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNF 355 (377)
T ss_dssp HHHHHHHHHHHHHH--STTCEECCCSBCSEEEEECT-TSCC-C----SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHhh--CCCceEecCCeeEEEEEECc-ccCC-C----HHHHHHHHHhCCEEecCChhccCCCCCEEEEEe
Confidence 77777777777652 34566566666655 46554 1111 1 2345566655 9999874 37999996
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+ .++++++++++++.+++
T Consensus 356 ~--~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 356 A--TSREVLEEAIDRMAKAV 373 (377)
T ss_dssp C--SCHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHH
Confidence 6 48999999999887654
No 56
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=1e-27 Score=272.42 Aligned_cols=345 Identities=13% Similarity=0.051 Sum_probs=246.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCCh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDG 323 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sG 323 (965)
+++||.+|++|||+..+ .+..+.+|+|.+|+.++++...+. ......+...++++.+++.++ .+.+++++++||
T Consensus 19 ~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~ 94 (391)
T 3dzz_A 19 SIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFG-YESVPAEYYKAVADWEEIEHRARPKEDWCVFASGV 94 (391)
T ss_dssp BTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCH
T ss_pred ccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCC-CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCH
Confidence 78999999999999877 234448999999999998764221 112256677888888888775 456799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSAN 401 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 401 (965)
++|++.+++.+. .++++|++.+++||++...+...+. .+..+|.. .....
T Consensus 95 ~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------- 146 (391)
T 3dzz_A 95 VPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGR-------------RVISSDLIYENSKYS------- 146 (391)
T ss_dssp HHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTC-------------EEEECCCEEETTEEE-------
T ss_pred HHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCC-------------EEEEeeeeecCCcee-------
Confidence 999999999873 2568899999999997544433322 22333321 10000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~ 480 (965)
.|+++|++++++ .++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|. ......+
T Consensus 147 ----~d~~~l~~~l~~--~~~~~v~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 218 (391)
T 3dzz_A 147 ----VNWADLEEKLAT--PSVRMMVFCN-PHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTV 218 (391)
T ss_dssp ----CCHHHHHHHHTS--TTEEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGS
T ss_pred ----ecHHHHHHHHhc--cCceEEEEEC-CCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhc
Confidence 268899999863 3567777776 689999766 667799999999999999999999999987774 3344444
Q ss_pred CC-Ccc----eeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHH
Q psy8199 481 EI-WPD----FLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNIL 551 (965)
Q Consensus 481 ~~-~pD----ivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~ 551 (965)
+. .+| +.++||+++ +| +++|+++++ +++++.+... ..+.++++.++++++++.++|+... -+...
T Consensus 219 ~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 292 (391)
T 3dzz_A 219 DWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEES-----FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELK 292 (391)
T ss_dssp CTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHH-----HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHH
T ss_pred CccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHH-----HHhhccCCCCHHHHHHHHHHHhccHHHHHHHH
Confidence 32 377 457899987 55 799999997 8888877651 1124567889999999999997632 13456
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-------CEEE
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-------NTVY 622 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-------~~lR 622 (965)
++++++.+++.+.|++. .|++..+.+.+.++ .+.+. ..+ .....+.+.|. ++||++.++. +++|
T Consensus 293 ~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 365 (391)
T 3dzz_A 293 QVLRDNFAYAREFLAKE--VPEVKVLDSNASYLAWVDIS-ALG----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVR 365 (391)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTSEECCCCBSSEEEEECG-GGC----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEE
T ss_pred HHHHHHHHHHHHHHHhh--CCCcEEeccCceEEEEEehh-hcC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEE
Confidence 66677777777777652 24555555555544 35553 110 11446778885 8999998732 6899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++ .++++++++++++.+++
T Consensus 366 is~~--~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 366 INLA--CPKELVIDGMQRLKQGV 386 (391)
T ss_dssp EECC--SCHHHHHHHHHHHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHHH
Confidence 9966 78999999999887654
No 57
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.95 E-value=1.7e-26 Score=265.78 Aligned_cols=346 Identities=13% Similarity=0.046 Sum_probs=237.0
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA 326 (965)
..+|||.+|.. .+| .+|++.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+ ++++++||++|
T Consensus 37 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 46899988754 567 6899999999998762 2232222345666777777766555 3567 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH-H
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-R 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 405 (965)
++.+++++.. ++++|++.+++||++.......+. .+..+|....... ....... .
T Consensus 114 ~~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~~~~~~~~ 169 (429)
T 1yiz_A 114 LYATIQGHVD--------EGDEVIIIEPFFDCYEPMVKAAGG-------------IPRFIPLKPNKTG---GTISSADWV 169 (429)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECBCCCSS---SSEEGGGCB
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEeCCccccc---ccccccCcc
Confidence 9999998732 458899999999998544332221 2233333211000 0000000 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccc----cc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACE----HA 480 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~----~~ 480 (965)
.|+++|++++. +++++|++++ ++|++|.+. +++++++|.++|++||+++|+||+|++|++.|. ...+. ..
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 170 LDNNELEALFN---EKTKMIIINT-PHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp CCHHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred cCHHHHHHHhc---cCceEEEECC-CCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 36788888874 4678888887 799999775 688999999999999999999999999877664 22222 23
Q ss_pred CCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-----HhcccH----
Q psy8199 481 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-----FNKDNI---- 550 (965)
Q Consensus 481 ~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-----~~~~~~---- 550 (965)
+..+++.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+. ...++.
T Consensus 245 ~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 317 (429)
T 1yiz_A 245 ERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSI 317 (429)
T ss_dssp GGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHH
T ss_pred CceEEEecchhccCCCC-cceEEEEeCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHH
Confidence 44455668999998 45 899999999999888765 23457889999999999999987 422333
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccc-------hhhHHHHHHHHHH-HcCcEEeec----
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQ-------IETFSKKFFVAAL-KNELLLRPI---- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~-------~~~~~~~~~~~l~-~~Gi~~~~~---- 617 (965)
.++++++.+++.+.|+++ ++..+.+ .|+++++++. ..... .......+.+.|. ++||++.|+
T Consensus 318 ~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~ 392 (429)
T 1yiz_A 318 SGELMAKRDYMASFLAEV----GMNPTVPQGGYFMVADWS-SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 392 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH----TCEEEECSBSSEEEEECC-SSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEEcc-cccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 444555666666666554 3333334 4667777775 11000 0012345777776 799999863
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+++ .++++++++++++.+.+
T Consensus 393 ~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 393 SEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp CGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred CCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 469999977 48999999999987654
No 58
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.95 E-value=3.3e-26 Score=259.23 Aligned_cols=331 Identities=14% Similarity=0.121 Sum_probs=241.8
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhcccc-c---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~~-~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++ .+|+.|||+.++. ++| +.+|++.+|+.++++..... . ...+..+...++++.++++++ .++++++
T Consensus 32 ~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i~~ 105 (384)
T 1bs0_A 32 RWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--YSRALLF 105 (384)
T ss_dssp SEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--CCcEEEe
Confidence 6888 7999999998873 378 58999999999998763221 1 111345788999999999995 4578888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+. .+++.|++ +..+|+....++...|. .+..+|.
T Consensus 106 ~sGt~a~~~~~~~~~--------~~gd~v~~-~~~~~~~~~~~~~~~g~------------~~~~~~~------------ 152 (384)
T 1bs0_A 106 ISGFAANQAVIAAMM--------AKEDRIAA-DRLSHASLLEAASLSPS------------QLRRFAH------------ 152 (384)
T ss_dssp SCHHHHHHHHHHHHC--------CTTCEEEE-ETTCCHHHHHHHHTSSS------------EEEEECT------------
T ss_pred CCcHHHHHHHHHHhC--------CCCcEEEE-cccccHHHHHHHHHcCC------------CEEEeCC------------
Confidence 899999999998762 13455554 45556655444443331 2233332
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-Cccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~ 478 (965)
.|+++|++++++..+.+++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|. |+ +++|..+. +
T Consensus 153 -----~d~~~l~~~l~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~ 221 (384)
T 1bs0_A 153 -----NDVTHLARLLASPCPGQQMVVTEG-VFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-W 221 (384)
T ss_dssp -----TCHHHHHHHHHSCCSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-H
T ss_pred -----CCHHHHHHHHHhcCCCCeEEEEeC-CCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-H
Confidence 257889998876433478889998 8999999887 8999999999999999999995 42 44454332 4
Q ss_pred ccCCCccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHH
Q psy8199 479 HAEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQR 553 (965)
Q Consensus 479 ~~~~~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~ 553 (965)
.++..+|++ ++||.++. +.|++++++++++.+.... . .+..+++.|+++++++.++|+.+.+ ++..++
T Consensus 222 ~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 294 (384)
T 1bs0_A 222 LQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFA--R--HLIYSTSMPPAQAQALRASLAVIRSDEGDARREK 294 (384)
T ss_dssp HTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHC--H--HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhc--h--hhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHH
Confidence 566678988 89998863 4488999999988776411 1 1234457899999999999998763 357788
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR~~p 625 (965)
++++.+++.+.|+++ ++....+.|.++.+.+. + ......+.+.|.++||.+.+.. +++|+++
T Consensus 295 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~ 364 (384)
T 1bs0_A 295 LAALITRFRAGVQDL----PFTLADSCSAIQPLIVG--D----NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTL 364 (384)
T ss_dssp HHHHHHHHHHHHTTS----SCEECSCCSSBCCEEEE--S----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBC
T ss_pred HHHHHHHHHHHHHhc----CCcccCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEE
Confidence 888999999888765 23323366777777764 2 1124568888999999998742 5899999
Q ss_pred CcccCHHHHHHHHHhhhc
Q psy8199 626 PYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~ 643 (965)
+..+++++++++++++.+
T Consensus 365 ~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 365 TAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 988899999999988764
No 59
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=1.7e-26 Score=262.18 Aligned_cols=342 Identities=12% Similarity=0.100 Sum_probs=228.0
Q ss_pred eEEEecCCc-----ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcH-HHHHHHHHHHhhcC--CCCCe
Q psy8199 246 SKLITFSGK-----RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHK-PVIKLSEKLSSLTQ--YKLGH 316 (965)
Q Consensus 246 ~~~~d~dG~-----~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~-~~~~la~~l~~~~~--~~~~~ 316 (965)
+++||.+|+ +|+||.++. ..+| .+|+|.+|+.++++.. ..+.. ...+ ....+++.+.+..+ .+.++
T Consensus 15 ~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~~lr~~la~~l~~~~g~~~~~~~ 89 (390)
T 1d2f_A 15 CTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSR--WKNDEFLAAIAHWFSTQHYTAIDSQT 89 (390)
T ss_dssp ---------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCC--SCCHHHHHHHHHHHHHHSCCCCCGGG
T ss_pred ccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCC--CChHHHHHHHHHHHHHhcCCCCCHHH
Confidence 789999998 789997764 4577 7899999999998753 22222 1455 67777777776655 45679
Q ss_pred EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC--CCC
Q psy8199 317 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNI 394 (965)
Q Consensus 317 v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 394 (965)
|++++||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.... .+.
T Consensus 90 v~~t~g~~~al~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~ 148 (390)
T 1d2f_A 90 VVYGPSVIYMVSELIRQWSE--------TGEGVVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWF 148 (390)
T ss_dssp EEEESCHHHHHHHHHHHSSC--------TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEE
T ss_pred EEEcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCcHHHHHHHHHCCC-------------EEEEeecccCCCccc
Confidence 99999999999999997632 458899999999998654433222 2233333210 000
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc
Q psy8199 395 NKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 474 (965)
Q Consensus 395 ~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~ 474 (965)
.|+++|++++++ .++++|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|..
T Consensus 149 -----------~d~~~l~~~l~~--~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 213 (390)
T 1d2f_A 149 -----------CDMGKLEAVLAK--PECKIMLLCS-PQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQP 213 (390)
T ss_dssp -----------CCHHHHHHHHTS--TTEEEEEEES-SCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC
T ss_pred -----------cCHHHHHHHhcc--CCCeEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 267889988863 2466666544 589999775 6778999999999999999999999998776653
Q ss_pred ccccccCCCc---c-eeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccc-cCCC-CCCHHHHHHHHHHHHHHh
Q psy8199 475 FACEHAEIWP---D-FLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLH-SHSY-SGNPLACCAALATLEIFN 546 (965)
Q Consensus 475 ~~~~~~~~~p---D-ivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~-~~t~-~~~~~~~aaa~a~L~~~~ 546 (965)
+. ....+.+ | +.++||.++ +| +++|+++++ +++++.+.. ..+ ..++ +.|+++++++.++|+...
T Consensus 214 ~~-~~~~~~~~~~d~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~l~~~~ 285 (390)
T 1d2f_A 214 HI-PWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLS------ALKGRDGLSSPSVLALTAHIAAYQQGA 285 (390)
T ss_dssp CC-CGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHH------HHHTTSCCCSCCHHHHHHHHHHHHHCH
T ss_pred Cc-CHHHcchhhHhhccCccHhhcccC-hhheEEEECCHHHHHHHHH------HHhhhcccCCCCHHHHHHHHHHHhcCH
Confidence 21 1112222 3 778999997 56 799999985 788877754 223 4565 789999999999997522
Q ss_pred c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----
Q psy8199 547 K--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----- 617 (965)
Q Consensus 547 ~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----- 617 (965)
+ +...++++++.+++.+.|++. .|++..+++.|.++ ++.+. ..+ .....+.+.|. ++||++.++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~ 358 (390)
T 1d2f_A 286 PWLDALRIYLKDNLTYIADKMNAA--FPELNWQIPQSTYLAWLDLR-PLN----IDDNALQKALIEQEKVAIMPGYTYGE 358 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CSSCCCCCCSBCSEEEEECG-GGC----CCHHHHHHHHHHTTCEECEEGGGGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCCEEecCCccEEEEEEcc-ccC----CCHHHHHHHHHHHcCEEeeCccccCC
Confidence 1 234455666666676666551 34555556666554 46653 100 01346778888 689999874
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++. ++++++++++++.+++
T Consensus 359 ~~~~~~Ris~~~--~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 359 EGRGFVRLNAGC--PRSKLEKGVAGLINAI 386 (390)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 3689999765 5788888888876554
No 60
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.95 E-value=8.9e-27 Score=263.76 Aligned_cols=343 Identities=12% Similarity=0.062 Sum_probs=237.6
Q ss_pred eEEEecC-CcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy8199 246 SKLITFS-GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~d-G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ 321 (965)
+++||.+ |+++||+.+|. ..++ .+|+|.+|+.+++++. ..+. ....+...++++.+++.++ .+.+++++++
T Consensus 15 ~~~~d~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~--~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~ 89 (383)
T 3kax_A 15 SIKWDTYKNEELIHAWIAD--MDFE-VPQPIQTALKKRIEHPIFGYT--LPPENIGDIICNWTKKQYNWDIQKEWIVFSA 89 (383)
T ss_dssp ----CCCSSSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCCCCCC--CCCTTHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred ceeeeccCCCCeeeccccc--CCCC-CCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHHhCCCCChhhEEEcC
Confidence 7899954 68999998873 3444 7999999999998763 2222 2267888999999999876 4567999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCC-CCCCCCh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN-INKGNSA 400 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 400 (965)
||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|...... ..
T Consensus 90 g~~~a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~----- 143 (383)
T 3kax_A 90 GIVPALSTSIQAFTK--------ENESVLVQPPIYPPFFEMVTTNNR-------------QLCVSPLQKQNDTYA----- 143 (383)
T ss_dssp CHHHHHHHHHHHHCC--------TTCEEEECSSCCHHHHHHHHHTTC-------------EEEECCCEEETTEEE-----
T ss_pred CHHHHHHHHHHHhCC--------CCCEEEEcCCCcHHHHHHHHHcCC-------------EEEeccceecCCcEE-----
Confidence 999999999998732 568899999999998544333322 222333211000 00
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH 479 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~ 479 (965)
.|+++|++++. +++++|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.. .....
T Consensus 144 -----~d~~~l~~~l~---~~~~~v~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 213 (383)
T 3kax_A 144 -----IDFEHLEKQFQ---QGVKLMLLCS-PHNPIGRVW-KKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFAS 213 (383)
T ss_dssp -----CCHHHHHHHHT---TTCCEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred -----EcHHHHHHHhC---cCCeEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhh
Confidence 26789998883 3455566665 689999766 7788999999999999999999999999877752 12221
Q ss_pred -----cCCCcceeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccH
Q psy8199 480 -----AEIWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNI 550 (965)
Q Consensus 480 -----~~~~pDivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~ 550 (965)
.+..+.+.++||.++ +| +++|++++ ++++++.+... ..+.++++.|+++++++.++|+... -+..
T Consensus 214 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 287 (383)
T 3kax_A 214 LSEELAARTITCMAPSKTFNIAG-LQASIIIIPNEKLRQAFTSI-----QYRQGFHGLNIFAYTAMQSAYTECNDWLNEI 287 (383)
T ss_dssp SCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHH-----HHHTTCCCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cCccccCcEEEEEEChhhccCcc-hhheEEEeCCHHHHHHHHHH-----HhhcccCCCCHHHHHHHHHHHHhhHHHHHHH
Confidence 133344567899987 55 79999988 68888877641 1123455889999999999986422 1334
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTV 621 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~l 621 (965)
.++++++.+++.+.|++. .|++..+.+.|.++. +.+. ..+ .....+.+.|. ++||++.|+ .+++
T Consensus 288 ~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~i 360 (383)
T 3kax_A 288 RFYIEDNAKFACEYIKDH--IPTLSVMKPEGSFLLWIDCS-ALN----LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHI 360 (383)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCEECCCSBSSEEEEECG-GGC----CCHHHHHHHHHHTSCEECEESGGGCTTCTTEE
T ss_pred HHHHHHHHHHHHHHHHhh--CCCceEecCCceEEEEEEcc-ccC----CCHHHHHHHHHhhCCEEeECchhhcCCCCCeE
Confidence 566666777777777652 355666666666655 5553 110 11446778887 789999873 2789
Q ss_pred EEeCCcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
|++++ .++++++++++++.++
T Consensus 361 Ri~~~--~~~~~i~~~l~~l~~~ 381 (383)
T 3kax_A 361 GINIG--CPRSVLEEILNRLRHT 381 (383)
T ss_dssp EEECS--SCHHHHHHHHHHHHHH
T ss_pred EEEEc--CCHHHHHHHHHHHHHH
Confidence 99965 6899999999887654
No 61
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.95 E-value=5.5e-27 Score=266.29 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=241.8
Q ss_pred eEEEecCCccc-----ccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEE
Q psy8199 246 SKLITFSGKRY-----LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCF 318 (965)
Q Consensus 246 ~~~~d~dG~~y-----lD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~ 318 (965)
+++||.+|++| +|+.++ .+..+.+|+|.+|+.++++...+. ...+..+...++++.+++.++ .+.++++
T Consensus 19 ~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~-y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~ 94 (391)
T 4dq6_A 19 SSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYG-YTTRPDSYNESIVNWLYRRHNWKIKSEWLI 94 (391)
T ss_dssp BHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred ceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCcHHHeE
Confidence 78999988766 898876 234457899999999998764221 223557788899999999886 5577999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCC
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINK 396 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 396 (965)
+++||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.. ......
T Consensus 95 ~~~g~~~a~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~- 152 (391)
T 4dq6_A 95 YSPGVIPAISLLINELTK--------ANDKIMIQEPVYSPFNSVVKNNNR-------------ELIISPLQKLENGNYI- 152 (391)
T ss_dssp EESCHHHHHHHHHHHHSC--------TTCEEEECSSCCTHHHHHHHHTTC-------------EEEECCCEECTTSCEE-
T ss_pred EcCChHHHHHHHHHHhCC--------CCCEEEEcCCCCHHHHHHHHHcCC-------------eEEeeeeeecCCCceE-
Confidence 999999999999997742 568899999999998554433322 22333332 100000
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-c
Q psy8199 397 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-F 475 (965)
Q Consensus 397 ~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~ 475 (965)
.|+++|++++++ +.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.. .
T Consensus 153 ---------~d~~~l~~~l~~----~~~v~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 217 (391)
T 4dq6_A 153 ---------MDYEDIENKIKD----VKLFILCN-PHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHI 217 (391)
T ss_dssp ---------CCHHHHHHHCTT----EEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC
T ss_pred ---------eeHHHHHHHhhc----CCEEEEEC-CCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCcc
Confidence 267888888863 66666666 689999865 6777999999999999999999999998777652 2
Q ss_pred cccccC-----CCcceeeeccccC-CCcccceeeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--
Q psy8199 476 ACEHAE-----IWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-- 546 (965)
Q Consensus 476 ~~~~~~-----~~pDivt~sK~l~-gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-- 546 (965)
.+..++ ....+.++||+++ +| +++|++++++ ++++.+... ..+.++++.|+++++++.++|+...
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~ 291 (391)
T 4dq6_A 218 PMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDA-----FTRIDIKRNNCFSLVATEASYNNGESW 291 (391)
T ss_dssp CGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCCCCCHHHHHHHHHHHHHCHHH
T ss_pred CHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHH-----HHhhcCCCCCHHHHHHHHHHHhchHHH
Confidence 222221 1123447899987 45 8999999875 888877641 1234566889999999999997532
Q ss_pred cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHHHc-CcEEeec-------
Q psy8199 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI------- 617 (965)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------- 617 (965)
-+...++++++.+++.+.|++. .|++..+.+.|.++. +.+. ..+ .....+.+.|.++ ||+++|+
T Consensus 292 ~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 364 (391)
T 4dq6_A 292 LESFLEYLESNIDFAIKYINEN--MPKLKVRKPEGTYLLWVDFS-ALG----LSDEELESILVQKGKVALNQGNSFGIGG 364 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CTTSEECCCSBSSEEEEECG-GGC----CCHHHHHHHHHHTTCEECEEGGGGCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCCEecCCCccEEEEEEhh-hcC----CCHHHHHHHHHHhCCEEeeCchhhCCCC
Confidence 1234555666666666666541 356666667776655 5553 101 1144678888888 9999873
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++|++++ .++++++++++++.++
T Consensus 365 ~~~iRis~~--~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 365 SGYQRINLA--CPRSMLEEALIRIKNA 389 (391)
T ss_dssp TTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 278999976 6899999999888654
No 62
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.95 E-value=4.6e-26 Score=259.32 Aligned_cols=333 Identities=15% Similarity=0.130 Sum_probs=244.4
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccc-c---ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH-V---MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++ .+|+.|+|+.+|.+ +|| .+|++.+++.++++.... + ....+..+...++++.+++.++ .++++++
T Consensus 36 ~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~v~~~ 109 (398)
T 3a2b_A 36 TEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG--KEAAILF 109 (398)
T ss_dssp SEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEE
Confidence 7899 89999999998733 788 799999999999876421 1 1223456888999999999985 5799999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|++.+++.+.. +++.|++.+++|.++ ..+....| ..+..+|.
T Consensus 110 ~ggt~a~~~~~~~~~~--------~gd~V~~~~p~~~~~-~~~~~~~g------------~~~~~v~~------------ 156 (398)
T 3a2b_A 110 STGFQSNLGPLSCLMG--------RNDYILLDERDHASI-IDGSRLSF------------SKVIKYGH------------ 156 (398)
T ss_dssp SSHHHHHHHHHHHSSC--------TTCEEEEETTCCHHH-HHHHHHSS------------SEEEEECT------------
T ss_pred CCHHHHHHHHHHHHhC--------CCCEEEECCccCHHH-HHHHHHcC------------CceEEeCC------------
Confidence 9999999999997732 456777777766544 33332222 12233333
Q ss_pred hHHHHHHHHHHHHHHHhCCC-cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC--Ccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN-KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~-~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~ 477 (965)
.|+++|++++++..+ ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|..+ ++.+..+ .
T Consensus 157 -----~d~~~l~~~l~~~~~~~~~~v~~~~-~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~ 225 (398)
T 3a2b_A 157 -----NNMEDLRAKLSRLPEDSAKLICTDG-IFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-A 225 (398)
T ss_dssp -----TCHHHHHHHHHTSCSSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-H
T ss_pred -----CCHHHHHHHHHhhccCCceEEEEeC-CCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-H
Confidence 267889999875432 678899999 8999998876 999999999999999999999633 3444322 3
Q ss_pred cccCCC--ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHH
Q psy8199 478 EHAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 552 (965)
Q Consensus 478 ~~~~~~--pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~ 552 (965)
+.+++. +|++ +|||.++.. -|++++++++++.+.... ..+..+...+++.++++.++|+.++. ++..+
T Consensus 226 ~~~~~~~~~di~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~ 298 (398)
T 3a2b_A 226 SHFGLNDDVDLIMGTFSKSLASL---GGFVAGDADVIDFLKHNA----RSVMFSASMTPASVASTLKALEIIQNEPEHIE 298 (398)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSS---CEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHH
T ss_pred hhcCCCcCCeEEEecccccccCC---CcEEEeCHHHHHHHHHhc----ccceecCCCCHHHHHHHHHHHHHHhhCHHHHH
Confidence 444553 6888 789988742 188999999988776410 11344556678777778888887543 45788
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEe
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLM 624 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~ 624 (965)
+++++.+++.+.|+++ ++..+++.|.++.+.+. + ......+.+.|.++||.+.++ .+++|++
T Consensus 299 ~~~~~~~~l~~~L~~~----g~~~~~~~g~~~~~~~~--~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis 368 (398)
T 3a2b_A 299 KLWKNTDYAKAQLLDH----GFDLGATESPILPIFIR--S----NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFS 368 (398)
T ss_dssp HHHHHHHHHHHHHHHT----TCCBCSCCSSEEEEECC--C----HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHhc----CCCcCCCCCCEEEEEcC--C----HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEE
Confidence 8899999999999875 33334566888887764 2 112456888899999999875 2689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++..+++++++++++++.+.+
T Consensus 369 ~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 369 LMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 988889999999999987654
No 63
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.94 E-value=2.7e-28 Score=246.46 Aligned_cols=139 Identities=21% Similarity=0.203 Sum_probs=110.4
Q ss_pred cCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCe
Q psy8199 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114 (965)
Q Consensus 35 ~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K 114 (965)
+++|+|+|||+|++|++.+. ...++++++.. ..++++|||||++||||||||+|++++++|++ +++.++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~-------~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~--p~~~v~K 82 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEK 82 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC-------SSCCEEESCCCTTCEEEEEEESCHHHHHHHHH--HHHHSCE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc-------cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhC--ccCCCCE
Confidence 56799999999999998765 46788886632 23689999999999999999999999999999 7888999
Q ss_pred EEEEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHH
Q psy8199 115 KYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQ 192 (965)
Q Consensus 115 ~Y~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~ 192 (965)
+|+|+|.|.++++.. +..++. + .+++.+.+.++++. .++++|+|.|||+||||+||+
T Consensus 83 ~Y~a~V~G~~~~~~i~~l~~Gv~----------l---~~~~~~~a~~~~l~--------~s~l~i~L~tGR~HQIRr~~a 141 (237)
T 2gml_A 83 EYLVTVDKPITEEFIRGMSAGVP----------I---LGTVTKKCKVKKEA--------PFVFRITLVQGLNRQIRRMCE 141 (237)
T ss_dssp EEEEEESSCCCHHHHHHHSSCCE----------E---TTEECCCCEEEEEE--------TTEEEEEECCCSTTHHHHHHH
T ss_pred EEEEEEcccCCHHHHHHHHcCeE----------e---CCcccccEEEEEeC--------CEEEEEEEecCCcHHHHHHHH
Confidence 999999998875421 111111 1 12233344555553 379999999999999999999
Q ss_pred HhCCceecCCCC
Q psy8199 193 WLGHGIVGDNLY 204 (965)
Q Consensus 193 ~~g~pi~gD~~~ 204 (965)
++||||+||..+
T Consensus 142 ~lG~pV~~L~R~ 153 (237)
T 2gml_A 142 HFGYEVKKLERT 153 (237)
T ss_dssp HTTCCEEEEEEE
T ss_pred HcCCCEeeeEEE
Confidence 999999999776
No 64
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.94 E-value=6.7e-26 Score=257.83 Aligned_cols=341 Identities=12% Similarity=0.024 Sum_probs=238.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC---CCC-eEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY---KLG-HCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~-~v~~~~ 321 (965)
.+++|.+|+++|||.+|. ..++ .+|.|.+|+.++++....+....+..+...++++.+.+.++. +.+ ++++++
T Consensus 22 ~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~ 98 (396)
T 3jtx_A 22 QGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVL 98 (396)
T ss_dssp TTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEES
T ss_pred HhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcC
Confidence 557789999999999886 3455 689999999998876555544445677888899988887663 467 999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCc----eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNK----KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG 397 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~----~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (965)
||++|++.+++.+.. +++ ++|++.+++||++.......+. .+..+|.+.....
T Consensus 99 g~~~al~~~~~~~~~-------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~g~~--- 155 (396)
T 3jtx_A 99 GSREALFSFVQTVLN-------PVSDGIKPAIVSPNPFYQIYEGATLLGGG-------------EIHFANCPAPSFN--- 155 (396)
T ss_dssp SHHHHHHHHHHHHCC-------C---CCCCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCTTTCC---
T ss_pred CcHHHHHHHHHHHhC-------CCCccCCCEEEEcCCCcHhHHHHHHHcCC-------------EEEEeecCCCCCc---
Confidence 999999999998743 232 7899999999988554433322 2334443211111
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-cccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFFA 476 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~~ 476 (965)
.|+++|++++.+ ++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.| ....
T Consensus 156 --------~d~~~l~~~~~~---~~~~v~l~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 222 (396)
T 3jtx_A 156 --------PDWRSISEEVWK---RTKLVFVCS-PNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG 222 (396)
T ss_dssp --------CCGGGSCHHHHH---TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred --------cCHHHHHHhhcc---CcEEEEEEC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence 156777777764 456666655 589999876 66679999999999999999999999988776 3332
Q ss_pred cc--------ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-c
Q psy8199 477 CE--------HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-K 547 (965)
Q Consensus 477 ~~--------~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~ 547 (965)
.. ..+..+++.+|||+++.+++++|++++++++++.+.. ..+..+++.++++++++.++|+..+ -
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 296 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL------YRTYHGSAMSIPVQRASIAAWDDEQHV 296 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH------HHHHHTCCCCHHHHHHHHHHHHCCHHH
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHhCCHHHH
Confidence 21 1344456668999865433899999999999988865 2345678899999999999986311 0
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec---------
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------- 617 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------- 617 (965)
+...++++++.+++.+.|++. ..+. ....|.++++.+. . .....+.+.|. ++||++.|+
T Consensus 297 ~~~~~~~~~~~~~l~~~l~~~---~~~~-~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 365 (396)
T 3jtx_A 297 IDNRRLYQEKFERVIPILQQV---FDVK-LPDASFYIWLKVP--D-----GDDLAFARNLWQKAAIQVLPGRFLARDTEQ 365 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT---SCCC-CCSSSSEEEEECT--T-----SCHHHHHHHHHHHHCEECEEGGGGCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCcc-CCCeeEEEEEECC--C-----CCHHHHHHHHHHHCCEEEeCChHhCCcccc
Confidence 223445555555666666543 1111 1233667777664 1 11345667774 579999763
Q ss_pred ----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 ----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++||+++ .++++++++++++.+.
T Consensus 366 ~~~~~~~iRis~~--~~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 366 GNPGEGYVRIALV--ADVATCVKAAEDIVSL 394 (396)
T ss_dssp CCTTTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 269999965 4999999999988754
No 65
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-26 Score=262.22 Aligned_cols=348 Identities=11% Similarity=0.069 Sum_probs=240.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~ 327 (965)
.|+.++||.+|.+ .++ .+|.+.+|+.++++. ..+|....+..+....+++.+.+.++. +.++|++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 5789999998864 455 689999999999876 233433334566777888888776653 346899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCC-CCCCCCChhHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR-NINKGNSANEIARC 406 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 406 (965)
+.+++.+.. ++++|++.+++||++...+...+. .+..+|..... +.........+ ..
T Consensus 132 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~~~~~~~~-~~ 189 (447)
T 3b46_A 132 LSCLMGLLN--------AGDEVIVFEPFFDQYIPNIELCGG-------------KVVYVPINPPKELDQRNTRGEEW-TI 189 (447)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEEEECCGGGGTSCBCSTTS-EE
T ss_pred HHHHHHHcC--------CCCEEEEeCCCchhHHHHHHHcCC-------------EEEEEeCCCccccccccccccCc-cc
Confidence 999998742 568999999999998554433322 12223221100 00000000000 03
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc-----ccC
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE-----HAE 481 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~-----~~~ 481 (965)
|+++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|...... ..+
T Consensus 190 d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 264 (447)
T 3b46_A 190 DFEQFEKAIT---SKTKAVIINT-PHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ 264 (447)
T ss_dssp CHHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT
T ss_pred CHHHHHHhhc---cCCeEEEEeC-CCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC
Confidence 6788887774 4577777777 799999865 68899999999999999999999999987766322221 235
Q ss_pred CCcceeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHH
Q psy8199 482 IWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRIS 555 (965)
Q Consensus 482 ~~pDivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~ 555 (965)
..+.+.++||.++ .| +++|++++ ++++++.+.. ..+..+++.++++++++.++|+....++ ..++++
T Consensus 265 ~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~ 337 (447)
T 3b46_A 265 LTLTVGSAGKSFAATG-WRIGWVLSLNAELLSYAAK------AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYI 337 (447)
T ss_dssp TEEEEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEEecCchhcCCcc-hhhEEEEeCCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 5566678999997 45 89999999 9999888765 2345678889999999999998753233 556677
Q ss_pred HHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccch----------hhHHHHHHHHHH-HcCcEEeec------
Q psy8199 556 QDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQI----------ETFSKKFFVAAL-KNELLLRPI------ 617 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~----------~~~~~~~~~~l~-~~Gi~~~~~------ 617 (965)
++.+++.+.|+++ ++..+ +..|.++++++. ....+. ......+.+.|. ++||++.|+
T Consensus 338 ~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 412 (447)
T 3b46_A 338 NKFKIFTSIFDEL----GLPYTAPEGTYFVLVDFS-KVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK 412 (447)
T ss_dssp HHHHHHHHHHHHH----TCCEECCSBSSEEEEECT-TCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHC----CCeecCCCeeEEEEEecc-cccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC
Confidence 7777777777765 23333 334667777664 110000 012346777776 689999864
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+++||+++ .++++++++++++.+
T Consensus 413 ~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 413 EHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 478999976 589999999999876
No 66
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.94 E-value=1.9e-26 Score=262.71 Aligned_cols=345 Identities=14% Similarity=0.035 Sum_probs=234.0
Q ss_pred eEEEecCCc-------ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC
Q psy8199 246 SKLITFSGK-------RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG 315 (965)
Q Consensus 246 ~~~~d~dG~-------~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~ 315 (965)
+++||.+|+ .++||.++. ..++ .+|++.+++.++++.. ..+.. ...+....+++.+.+.++ .+.+
T Consensus 16 ~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~~~~~ 90 (399)
T 1c7n_A 16 SLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQTD 90 (399)
T ss_dssp BHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred ccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCC--CcHHHHHHHHHHHHHHhCCCCChh
Confidence 789999985 789997764 4455 6899999999998653 22221 145566667766666555 4567
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 395 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (965)
++++++||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.....+.
T Consensus 91 ~v~~t~g~~~a~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g~- 148 (399)
T 1c7n_A 91 WIINTAGVVPAVFNAVREFTK--------PGDGVIIITPVYYPFFMAIKNQER-------------KIIECELLEKDGY- 148 (399)
T ss_dssp GEEEESSHHHHHHHHHHHHCC--------TTCEEEECSSCCTHHHHHHHTTTC-------------EEEECCCEEETTE-
T ss_pred hEEEcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCcHhHHHHHHHcCC-------------EEEecccccCCCC-
Confidence 999999999999999997632 468899999999998655443322 1222332100000
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-c
Q psy8199 396 KGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F 474 (965)
Q Consensus 396 ~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~ 474 (965)
+ ..|+++|++++++ .++++|++.. ++|++|.+. +++++++|.++|++||+++|+||+|++|++.|. .
T Consensus 149 -------~-~~d~~~l~~~l~~--~~~~~v~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 216 (399)
T 1c7n_A 149 -------Y-TIDFQKLEKLSKD--KNNKALLFCS-PHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH 216 (399)
T ss_dssp -------E-ECCHHHHHHHHTC--TTEEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred -------E-EEcHHHHHHHhcc--CCCcEEEEcC-CCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCc
Confidence 0 0267899988863 3566666665 688899765 788999999999999999999999999877664 2
Q ss_pred cccccc-----CCCcceeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHh
Q psy8199 475 FACEHA-----EIWPDFLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFN 546 (965)
Q Consensus 475 ~~~~~~-----~~~pDivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~ 546 (965)
.....+ +....+.++||.++ +| +++|+++++ +++++.+.. .....++ +.|+++++++.++|+...
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~~~l~~~~ 289 (399)
T 1c7n_A 217 TVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTK------SRDATSGMPFTTLGYKACEICYKECG 289 (399)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHH------HHHHTTCCCCCHHHHHHHHHHHHHCH
T ss_pred ccHHHcCccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHH------HHhhcccCCCCHHHHHHHHHHHhCCh
Confidence 223222 22233457899987 56 799999997 678887764 1233334 579999999999997431
Q ss_pred c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----
Q psy8199 547 K--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----- 617 (965)
Q Consensus 547 ~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----- 617 (965)
+ +...++++++.+++.+.|++. .|++..+++.|.++ ++.+. ..+ .....+.+.|. ++||++.|+
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~ 362 (399)
T 1c7n_A 290 KWLDGCIKVIDKNQRIVKDFFEVN--HPEIKAPLIEGTYLQWIDFR-ALK----MDHKAMEEFMIHKAQIFFDEGYIFGD 362 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CTTSBCCCCSBSSEEEEECG-GGC----CCHHHHHHHHHHTTCCCCEEGGGGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCCeEecCCceEEEEEEcc-cCC----CCHHHHHHHHHHhCCEEEeCccccCC
Confidence 1 223445566666666666541 35555566666655 46653 100 01346778887 789999874
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++. .+++++++++++.+.+
T Consensus 363 ~~~~~iRis~~~--~~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 363 GGIGFERINLAA--PSSVIQESLERLNKAL 390 (399)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecc--CHHHHHHHHHHHHHHH
Confidence 3689999764 4788998888876554
No 67
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.94 E-value=4.8e-28 Score=254.98 Aligned_cols=170 Identities=19% Similarity=0.126 Sum_probs=124.1
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEE---EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDII---YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~---~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 78 (965)
|.+|+++ + .+...+... +.+......+. |||++|+|+|||+|++||+.+.. ..++++.+.. ..+++
T Consensus 33 V~VNG~~-v-~~~~~V~~g-D~I~v~~~~i~~~~~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~-------~~~~~ 101 (290)
T 3dh3_A 33 VFLNGKR-A-TIGDQVKPG-DVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-------SKRVF 101 (290)
T ss_dssp EEETTEE-C-CTTCEECTT-CCEEETTEEECCCCGGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC-------SSCCE
T ss_pred EEECCEE-c-cCCcCcCCC-CEEEeccccccccccccceEEEEECCCccccCCCCCC-CCcHHHHhhc-------cCcee
Confidence 4566665 3 444444433 22222222222 58999999999999999987755 5688887743 24789
Q ss_pred ccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceE
Q psy8199 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPAL 156 (965)
Q Consensus 79 ~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (965)
+|||||++||||||||+|++++++|++ +.+.++|+|+|+|.|.++++.. +..++..+. ...+++.
T Consensus 102 ~VhRLD~dTSGLllla~d~~~~~~L~~--~~~~v~K~Y~a~V~G~~~~~~i~~l~~Gv~l~~-----------~~~~~~~ 168 (290)
T 3dh3_A 102 PIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG-----------TVTKKCK 168 (290)
T ss_dssp ESSCCCTTCEEEEEEESCTTHHHHHHC--GGGCCCEEEEEEESSCCCHHHHHHHHTCCBCSS-----------SBCCCCE
T ss_pred eeccCCCCCcceEEEcCCHHHHHHHHH--hhCCcCEEEEEEECCCCCHHHHHHHhcCcccCC-----------cccceEE
Confidence 999999999999999999999999998 6889999999999998876421 122222110 0122333
Q ss_pred EEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCC
Q psy8199 157 TYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205 (965)
Q Consensus 157 t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~ 205 (965)
++. .+.++++|+|.|||+||||+||+++||||+++..+.
T Consensus 169 --v~~--------~~~~~l~l~l~tGR~HQIR~~~~~lG~pV~~L~R~~ 207 (290)
T 3dh3_A 169 --VKK--------EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTR 207 (290)
T ss_dssp --EEE--------CSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred --EEE--------cCCeEEEEEEeCCCChHHHHHHHHcCCeEEEeEEEE
Confidence 222 234799999999999999999999999999998874
No 68
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.94 E-value=9.3e-26 Score=257.99 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=230.2
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCC--CC-CeEEEcCChh
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQY--KL-GHCFYGSDGA 324 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~--~~-~~v~~~~sGs 324 (965)
..+|++++||.+|. ..+| .+|.+.+++.++++... .+....+..+....+++.+.+..+. +. +++++++||+
T Consensus 33 ~~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~ 109 (412)
T 2x5d_A 33 RRRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSK 109 (412)
T ss_dssp HHTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHH
T ss_pred hhcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChH
Confidence 36799999999886 3567 78999999998876531 1221223445556666666554453 45 6999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|++.+++.+. .++++|++.+++||++...+...+. .+..+|.....+ +
T Consensus 110 ~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~---------~- 158 (412)
T 2x5d_A 110 EGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGA-------------QVRSVPLVPGID---------F- 158 (412)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTC-------------EEEEEECSTTSC---------H-
T ss_pred HHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-------------EEEEeecCCccC---------C-
Confidence 99999999763 2458899999999998544332221 233344321100 1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc---
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA--- 480 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~--- 480 (965)
..|+++|++++. +++++|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|. ......+
T Consensus 159 ~~d~~~l~~~i~---~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 233 (412)
T 2x5d_A 159 FNELERAIRESI---PKPRMMILGF-PSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA 233 (412)
T ss_dssp HHHHHHHHHTEE---SCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG
T ss_pred CCCHHHHHHhcc---cCceEEEECC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc
Confidence 147888888775 2344444533 488888765 788999999999999999999999999876664 2222222
Q ss_pred -CCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHH
Q psy8199 481 -EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 556 (965)
Q Consensus 481 -~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~ 556 (965)
+....+.++||.++ +| +++|++++++++++.+.. ..+..+++.|+++++++.++|+...+ +...+++++
T Consensus 234 ~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 306 (412)
T 2x5d_A 234 KDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQ 306 (412)
T ss_dssp GGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred cCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22233457999997 56 799999999999888765 23445788999999999999974321 345667777
Q ss_pred HHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~ 627 (965)
+.+++.+.|+++ ++..+++. |.++++.+. +... ......+.+.|.+ +||++.++ .+++|++++.
T Consensus 307 ~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~ 379 (412)
T 2x5d_A 307 RRDVLVKGLREA----GWMVENPKASMYVWAKIP--EPYA-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE 379 (412)
T ss_dssp HHHHHHHHHHHH----TCCCCCCSBSSEEEEECC--TTTG-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHHHC----CCEecCCCeeeEEEEEcC--CccC-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC
Confidence 888888888765 33334555 556666663 1100 0013467777764 79999874 3699999875
Q ss_pred ccCHHHHHHHHHhhhccc
Q psy8199 628 ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~ 645 (965)
++++++++++++.+.+
T Consensus 380 --~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 380 --NRDRLRQAVRGIKAMF 395 (412)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 8899999998887554
No 69
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=3.5e-26 Score=262.52 Aligned_cols=345 Identities=12% Similarity=0.063 Sum_probs=240.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChh
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGA 324 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGs 324 (965)
.++.+|||.+|.+. ..||.+|++.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+++++++||+
T Consensus 41 ~~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~ 119 (425)
T 1vp4_A 41 ADKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 119 (425)
T ss_dssp TSTTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred cCCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHH
Confidence 36789999988753 45889999999999998753 2222222345666677777765545 4567999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|++.+++.+.. ++++|++.+++||++.......+. .+..+|.... +
T Consensus 120 ~al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-~----------- 166 (425)
T 1vp4_A 120 QALDLIGKLFLD--------DESYCVLDDPAYLGAINAFRQYLA-------------NFVVVPLEDD-G----------- 166 (425)
T ss_dssp HHHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEETT-E-----------
T ss_pred HHHHHHHHHhCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------EEEEeccCCC-C-----------
Confidence 999999997632 458899999999998554433221 1223332110 0
Q ss_pred HHHHHHHHHHHHhC-----CCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc
Q psy8199 405 RCAIFDLEILLKKN-----HNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC 477 (965)
Q Consensus 405 ~~d~~~le~~l~~~-----~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~ 477 (965)
.|+++|++++++. +.++++|+ +.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.. ...
T Consensus 167 -~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 243 (425)
T 1vp4_A 167 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSN-FHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI 243 (425)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred -CCHHHHHHHHHhhhhcccCCCceEEEECCC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCH
Confidence 2678888888641 12567764 444 688888765 7889999999999999999999999988766642 223
Q ss_pred cccCCCcc---eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h--cccH
Q psy8199 478 EHAEIWPD---FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N--KDNI 550 (965)
Q Consensus 478 ~~~~~~pD---ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~--~~~~ 550 (965)
..++..++ +.+|||.++.| +|+|++++++++++.+.. .....+++.|+++++++.++|+.. . -+..
T Consensus 244 ~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 316 (425)
T 1vp4_A 244 FKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQ------AKQSADLCSPAITHRLAARYLERYDLLEQLKPT 316 (425)
T ss_dssp HHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred HHhCCCCCEEEEeccccccccc-cceEEEeeCHHHHHHHHH------HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22222222 44789999966 899999999999888764 233455677999999999999763 1 1234
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CC
Q psy8199 551 LQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GN 619 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~ 619 (965)
.++++++.+++.+.|++. ...+++..+ +..|+++++.+. ++.. ...+.+.|.++||++.|+ .+
T Consensus 317 ~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~----~~~l~~~l~~~gi~v~~g~~f~~~~~~~~ 390 (425)
T 1vp4_A 317 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--EGFD----TWEMFEYAKRKKVFYVPGRVFKVYDEPSP 390 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--TTCC----TTTTHHHHHHHTEECEEGGGGCTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcC--CCCC----HHHHHHHHHHCCCEEECchhhcCCCCCCC
Confidence 566677778888888764 222245443 345777777764 1111 224667788889999873 36
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
++||+++.. ++++++++++++.+.+..
T Consensus 391 ~iRis~~~~-~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 391 SMRLSFCLP-PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp EEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 899998764 899999999998876543
No 70
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.94 E-value=1.1e-25 Score=257.00 Aligned_cols=341 Identities=16% Similarity=0.088 Sum_probs=238.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccc---cccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH---VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
.|+.+|||.+|.+. ..||.+|++.+|+.++++.... +....+..+....+++.+.+..+ ...+++++++||++|
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 47899999888653 4588999999999999876421 22122334555666666655445 346799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+.. ++++|++.+++||++.......+. .+..+|.... + .
T Consensus 111 ~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~-~------------~ 156 (407)
T 2zc0_A 111 LDLLGRVLID--------PGDVVITENPSYINTLLAFEQLGA-------------KIEGVPVDND-G------------M 156 (407)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEETT-E------------E
T ss_pred HHHHHHHhcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------EEEEcccCCC-C------------C
Confidence 9999998742 468899999999997543322211 2233332110 0 2
Q ss_pred HHHHHHHHHHh---CCCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccC
Q psy8199 407 AIFDLEILLKK---NHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE 481 (965)
Q Consensus 407 d~~~le~~l~~---~~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~ 481 (965)
|+++|++++++ ...++++|+ ++. ++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|.. .....++
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~v~~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 234 (407)
T 2zc0_A 157 RVDLLEEKIKELKAKGQKVKLIYTIPT-GQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD 234 (407)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC
T ss_pred CHHHHHHHHHhhhcccCCceEEEECCC-CCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC
Confidence 67888888862 123567764 444 688899865 7889999999999999999999999988666642 2233333
Q ss_pred C---CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h---cccHHHH
Q psy8199 482 I---WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N---KDNILQR 553 (965)
Q Consensus 482 ~---~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~---~~~~~~~ 553 (965)
. ..++.+|||.++.| +++|++++++++++.+.. ..+..+++.++++++++.++|+.. . -+...++
T Consensus 235 ~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 307 (407)
T 2zc0_A 235 NEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKVLM------QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLG 307 (407)
T ss_dssp SSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHHHH------HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHH
T ss_pred CCCCEEEEcccccccCCC-cceEEEecCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 2 23455799999966 799999999999888765 234566778999999999999753 1 2345677
Q ss_pred HHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec---------CCEEE
Q psy8199 554 ISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI---------GNTVY 622 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~---------~~~lR 622 (965)
++++.+++.+.|++. .+++..+ +..|+++.+.+. ++. ....+.+.|.++ ||++.++ .+++|
T Consensus 308 ~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iR 379 (407)
T 2zc0_A 308 YKEKRDIMLKALENH--LPNAEFTKPIAGMFVMFFLP--EGA----DGISFANELMEREGVVVVPGKPFYTDESGKNAIR 379 (407)
T ss_dssp HHHHHHHHHHHHHHH--CTTSCBCCCSBSSEEEEECS--TTC----CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEE
T ss_pred HHHHHHHHHHHHHHh--CCCCEEecCCCcEEEEEEcC--CCC----CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEE
Confidence 777888888888653 1333322 345667777764 111 134677888888 9999863 36899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++.. ++++++++++++.+.+
T Consensus 380 is~~~~-~~~~i~~~~~~l~~~l 401 (407)
T 2zc0_A 380 LNFSRP-SKEEIPIGIKKLAKLY 401 (407)
T ss_dssp EECSSS-CTTHHHHHHHHHHHHH
T ss_pred EEeCCC-CHHHHHHHHHHHHHHH
Confidence 998876 8899999999887654
No 71
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.94 E-value=2.2e-25 Score=250.11 Aligned_cols=320 Identities=15% Similarity=0.161 Sum_probs=224.9
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.+|+++|||.+|. ++++ .+|++.+|+.++++.... ++++...++.++++++++.+.+++++++||++|++.+
T Consensus 23 ~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~ 94 (361)
T 3ftb_A 23 FKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGV-----YPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELS 94 (361)
T ss_dssp -----CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGS-----CCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHH
T ss_pred cCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHH
Confidence 5899999999885 3565 589999999999887433 2344457888888888877778999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+ ++|++.+++||++.......+. .+..+|...... .++++
T Consensus 95 ~~~~------------d~vi~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~------------~~~~~ 137 (361)
T 3ftb_A 95 ISLF------------EKILIIVPSYAEYEINAKKHGV-------------SVVFSYLDENMC------------IDYED 137 (361)
T ss_dssp HTTC------------SEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCTTSC------------CCHHH
T ss_pred HHHc------------CcEEEecCChHHHHHHHHHcCC-------------eEEEeecCcccC------------CCHHH
Confidence 8754 6799999999997544433322 233444332111 14578
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--- 487 (965)
|++++++ ..++++++| +|++|.+. +.+.+++|.++|++||+++|+||+|++|++.+........+..++++
T Consensus 138 l~~~l~~---~~~v~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (361)
T 3ftb_A 138 IISKIDD---VDSVIIGNP--NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIR 211 (361)
T ss_dssp HHHHTTT---CSEEEEETT--BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEE
T ss_pred HHHhccC---CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEe
Confidence 8888863 334444555 88888766 67779999999999999999999999887642223333334444544
Q ss_pred eeccccC-CCcccceeee-ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 564 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~-~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~ 564 (965)
++||.++ +| +++|+++ +++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.
T Consensus 212 s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (361)
T 3ftb_A 212 AMTKFFAMPG-IRFGYGITNNKEIAAKIKA--------KQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEE 282 (361)
T ss_dssp ESSSTTSCGG-GCCEEEEESCHHHHHHHHT--------TSCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhcCCCC-cceeEEEeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899987 45 8999988 89999988865 23467889999999999986211 022344455555566665
Q ss_pred HHcccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHH
Q psy8199 565 LTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 565 L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~ 636 (965)
|++ .|++. ..++.|.++.+.+. . .....+.+.|.++||++.++ .+++|++++ +.+++++
T Consensus 283 l~~---~~~~~~~~~~~~~~~~~~~~-~------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~ 349 (361)
T 3ftb_A 283 LNK---IGFIKRVFSPHANFVLCRLE-N------ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTK 349 (361)
T ss_dssp HHH---SSSEEEEECCSSSEEEEEES-S------SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHH
T ss_pred HHh---CCCCceecCCCCeEEEEEcC-C------CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHH
Confidence 544 46777 77888999888775 1 11446788899999999874 368999954 7777777
Q ss_pred HHHhhhc
Q psy8199 637 MTSAIFQ 643 (965)
Q Consensus 637 ~~~~l~~ 643 (965)
+.+.+..
T Consensus 350 l~~~l~~ 356 (361)
T 3ftb_A 350 FLRALKG 356 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 72
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.94 E-value=9.8e-26 Score=252.30 Aligned_cols=331 Identities=13% Similarity=0.064 Sum_probs=240.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.++++.+|+.++||.++. ++++ .+|++.+|+.++++.. ..++.+...++.++++++++...+++++++||++
T Consensus 8 ~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~-----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 8 AAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA-----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp -CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT-----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred ccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC-----cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 456889999999999874 5565 7899999999988753 3445667789999999999766789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.+++.+.. ++++|++.+++|+++.......+. .+..+|..... .
T Consensus 80 a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~-~----------- 126 (354)
T 3ly1_A 80 GIRAAIEAYAS--------LEAQLVIPELTYGDGEHFAKIAGM-------------KVTKVKMLDNW-A----------- 126 (354)
T ss_dssp HHHHHHHHHCC--------TTCEEEEESSSCTHHHHHHHHTTC-------------EEEEECCCTTS-C-----------
T ss_pred HHHHHHHHHhC--------CCCeEEECCCCchHHHHHHHHcCC-------------EEEEecCCCCC-C-----------
Confidence 99999997632 568899999999987543333221 23444443211 1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-cc---cc-
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CE---HA- 480 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~---~~- 480 (965)
.|+++|+++++++ +++.+|+++. ++|++|.+. +.+.+++|.++| +||+++|+||+|++|++.+.... .. ..
T Consensus 127 ~d~~~l~~~l~~~-~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 127 FDIEGLKAAVAAY-SGPSIVYLVN-PNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp CCHHHHHHHHHTC-SSCEEEEEES-SCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred CCHHHHHHHhccC-CCCCEEEEeC-CCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 2688999998742 3456666666 689999876 566688888888 79999999999998876654211 11 11
Q ss_pred CCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDM 558 (965)
Q Consensus 481 ~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~ 558 (965)
+....+.++||.++ .| +++|++++++++++.+.. ....++.|+++++++.++|+... -+...++++++.
T Consensus 203 ~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 273 (354)
T 3ly1_A 203 ENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGR--------YVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSR 273 (354)
T ss_dssp SSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGG--------GTTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhccChh-hhheeeecCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32233447899997 55 899999999999988875 12336889999999999986331 123456667777
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ecCCEEEEeCCcccCHHHH
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEI 634 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~~lR~~p~~~~t~~~i 634 (965)
+++.+.|+++ ++..+++.|.++++.+. . ....+.+.|.++||++. ...+++|++. .+++++
T Consensus 274 ~~l~~~l~~~----~~~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~---~~~~~i 338 (354)
T 3ly1_A 274 QILLKALEDL----KLPYLPSEGNFVFHQLV-V-------PLKDYQTHMADAGVLIGRAFPPADNWCRISL---GTPQEM 338 (354)
T ss_dssp HHHHHHHHHH----TCCBCCCCSSEEEEECS-S-------CHHHHHHHHHHTTEECCCCCTTCTTEEEEEC---CCHHHH
T ss_pred HHHHHHHHHC----CCeECCCCceEEEEECC-C-------CHHHHHHHHHHCCEEEeecCCCCCCEEEEEc---CCHHHH
Confidence 7777777665 34455678888877764 1 14467788999999987 1237999994 388999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 339 ~~~~~~l~~~l 349 (354)
T 3ly1_A 339 QWVADTMREFR 349 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887643
No 73
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.94 E-value=2.2e-25 Score=250.77 Aligned_cols=326 Identities=12% Similarity=0.086 Sum_probs=237.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al 331 (965)
.+.+|||.++. ++++ .+|+|.+|+.+++..... ..++.+...++.++++++++. ..+++++++||++|++.++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 102 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVAL---NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA 102 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHT---TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhh---hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence 46899998874 4555 789999999999875311 233444567889999998875 5679999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+.. ++++|++.+++|+++.......+. .+..+|...... .|+++|
T Consensus 103 ~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~------------~d~~~l 149 (367)
T 3euc_A 103 LAAAR--------PGAKVMAPVPGFVMYAMSAQFAGL-------------EFVGVPLRADFT------------LDRGAM 149 (367)
T ss_dssp HHTCC--------TTCEEEEEESCSCCSCHHHHTTTC-------------EEEEEECCTTSC------------CCHHHH
T ss_pred HHHcC--------CCCEEEEcCCCHHHHHHHHHHcCC-------------eEEEecCCCCCC------------CCHHHH
Confidence 87632 568899999999998544333222 234444432111 368899
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
++++.++ ++++|+++. ++|++|.+. +.+.+++|.++|++| |+++|+||+|++|+..+........+...++.+|
T Consensus 150 ~~~l~~~--~~~~v~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~ 225 (367)
T 3euc_A 150 LAAMAEH--QPAIVYLAY-PNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTV 225 (367)
T ss_dssp HHHHHHH--CCSEEEEES-SCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEEC
T ss_pred HHHhhcc--CCCEEEEcC-CCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecc
Confidence 9988752 345566666 689999876 677799999999999 9999999999988654443344444444566689
Q ss_pred ccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcc
Q psy8199 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l 568 (965)
||...+| +++|++++++++++.+.. ...+++.|+++++++.++|+..+. +...++++++.+++.+.|++
T Consensus 226 sK~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~- 295 (367)
T 3euc_A 226 SKLGLAG-IRLGYVAGDPQWLEQLDK--------VRPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA- 295 (367)
T ss_dssp CCTTSCS-CCEEEEEECHHHHHHHGG--------GCCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhhcccc-cCceeeeeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9983345 799999999999988865 234677899999999999975211 23455666666667666655
Q ss_pred cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 569 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 569 ~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.|++...++.|.++.+.+. + ...+.+.|.++||++.++ .+++|++.+ ++++++++++++
T Consensus 296 --~~g~~~~~~~~~~~~~~~~--~-------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l 361 (367)
T 3euc_A 296 --HGGVTVFPSAANFLLARVP--D-------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAF 361 (367)
T ss_dssp --STTCEECCCSSSEEEEECS--C-------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHH
T ss_pred --CCCcEECCCCCeEEEEECC--C-------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHH
Confidence 3566666777888777653 1 346778899999999874 268999943 899999999988
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+.+
T Consensus 362 ~~~l 365 (367)
T 3euc_A 362 AASL 365 (367)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7643
No 74
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=9.3e-26 Score=257.09 Aligned_cols=338 Identities=8% Similarity=0.012 Sum_probs=233.5
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCCC--C-CeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~--~-~~v~~~~sGse 325 (965)
..|++++||.+|.+ .+| .+|.+.+|+.++++.. ..+....+..+....+++.+.+..+.. . ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 45889999998865 577 5899999999988542 122222234555666666666655643 2 68999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.......
T Consensus 121 al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------- 168 (404)
T 2o1b_A 121 GLVAVPTCVIN--------PGDYVLLPDPGYTDYLAGVLLADG-------------KPVPLNLEPPHYL----------- 168 (404)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCSSHHHHHHHTTC-------------EEEEEECCTTTCC-----------
T ss_pred HHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHCCC-------------EEEEeccCcccCc-----------
Confidence 99999997732 458899999999998654433221 2333443211000
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc----C
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA----E 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~ 481 (965)
.|+++|++++. .++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.......+ +
T Consensus 169 ~d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 243 (404)
T 2o1b_A 169 PDWSKVDSQII---DKTKLIYLTY-PNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKD 243 (404)
T ss_dssp CCGGGSCHHHH---HHEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHH
T ss_pred CCHHHHHHhhc---cCceEEEEcC-CCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCC
Confidence 24677777775 2467777775 688899765 7889999999999999999999999988665532221111 2
Q ss_pred CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 482 ~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
....+.++||.++ .| +++|++++++++++.+.. .....+++.++++++++.++|+...+ +...++++++.
T Consensus 244 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 316 (404)
T 2o1b_A 244 VAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKK------YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRR 316 (404)
T ss_dssp HEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchhccCch-hheEeEecCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2234558999997 56 899999999999888765 23445678899999999999976311 23455566677
Q ss_pred HHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
+++.+.|+++ ++..+.+. |.++++.+. ++. ....+.+.|. ++||++.++ .+++|++++.
T Consensus 317 ~~l~~~L~~~----g~~~~~~~~g~~~~~~~~--~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-- 384 (404)
T 2o1b_A 317 DRFEAMLAKA----DLPFVHAKGGIYVWLETP--PGY----DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-- 384 (404)
T ss_dssp HHHHHHHHHT----TCCEECCCBSSEEEEECC--TTC----CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--
T ss_pred HHHHHHHHhc----CCeecCCCcceEEEEeCC--CCC----CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--
Confidence 7777777664 34444554 445666664 211 1345677776 679999874 3699999875
Q ss_pred CHHHHHHHHHhhhccccc
Q psy8199 630 NKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~~ 647 (965)
++++++++++++.+.+.+
T Consensus 385 ~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 385 DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CTTHHHHHHHHHHGGGGG
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 778999999998876543
No 75
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.94 E-value=1.4e-25 Score=252.12 Aligned_cols=326 Identities=13% Similarity=0.141 Sum_probs=224.2
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~ 328 (965)
++.+|++++||.++. +++| .+|++.+|+.++++....+ +.....++.+.++++++.+.+++++++||++|++
T Consensus 19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY-----PDADYFHLHQALARHHQVPASWILAGNGETESIF 90 (364)
T ss_dssp HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC-----CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHH
T ss_pred cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHH
Confidence 467899999998875 4577 7899999999988663222 2334567888888888766679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.+ . + ++|++.+++||++...+...+. .+..+|........ .+
T Consensus 91 ~~~~~~-~--------g-d~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~l 136 (364)
T 1lc5_A 91 TVASGL-K--------P-RRAMIVTPGFAEYGRALAQSGC-------------EIRRWSLREADGWQ-----------LT 136 (364)
T ss_dssp HHHHHH-C--------C-SEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTTC-----------CC
T ss_pred HHHHHc-C--------C-CeEEEeCCCcHHHHHHHHHcCC-------------eEEEEeCCcccccc-----------hh
Confidence 999877 1 4 7899999999998654433322 22333332100000 01
Q ss_pred HHHHHHHHhCCCcEE-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc---cCCCc
Q psy8199 409 FDLEILLKKNHNKIA-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH---AEIWP 484 (965)
Q Consensus 409 ~~le~~l~~~~~~~a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~---~~~~p 484 (965)
+++.+.+ .++++ .++++| +|++|.+. +.+++++|.++|++||+++|+||+|++|++.+.. .... ++...
T Consensus 137 ~~~~~~~---~~~~~~v~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~i 209 (364)
T 1lc5_A 137 DAILEAL---TPDLDCLFLCTP--NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETG-FIPALKDNPHIW 209 (364)
T ss_dssp TTHHHHC---CTTCCEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC-SGGGCTTCTTEE
T ss_pred HHHHHhc---cCCCCEEEEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccc-hhhHhccCCCEE
Confidence 2222222 23344 444566 88888765 7889999999999999999999999988654322 1222 23223
Q ss_pred ceeeeccccC-CCcccceeee-ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGIT-GGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 561 (965)
Q Consensus 485 Divt~sK~l~-gG~~pig~v~-~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l 561 (965)
.+.++||+++ +| +++|+++ +++++++.+.. ...+++.|+++++++.++|+... -+...++++++.+++
T Consensus 210 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 280 (364)
T 1lc5_A 210 VLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRR--------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARF 280 (364)
T ss_dssp EEEESTTTTTCTT-TCCEEEECCCHHHHHHHHH--------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECchhhcCCc-cceEEEEECCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3447899997 56 7999999 99999888765 12467889999999998886411 122344455556666
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i 634 (965)
.+.|++ .|++..+++.|.++.+.+. .+ ...+.+.|.++||.+.++ .+++|++. .+.+++
T Consensus 281 ~~~L~~---~~~~~~~~~~g~~~~~~~~-~~-------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~ 346 (364)
T 1lc5_A 281 YQALCQ---LPLLTVYPGRANYLLLRCE-RE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQN 346 (364)
T ss_dssp HHHHHT---STTEEECCCSSSEEEEEES-CT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHH
T ss_pred HHHHhc---CCCCEECCCCCeEEEEECC-Cc-------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHH
Confidence 666654 4666666778888887764 11 224667888999999874 36899993 468888
Q ss_pred HHHHHhhhcccc
Q psy8199 635 QHMTSAIFQTFN 646 (965)
Q Consensus 635 ~~~~~~l~~~~~ 646 (965)
+++++++.+.+.
T Consensus 347 ~~l~~~l~~~~~ 358 (364)
T 1lc5_A 347 ERLLAALRNVLT 358 (364)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 888888766543
No 76
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.94 E-value=1.5e-25 Score=254.22 Aligned_cols=339 Identities=11% Similarity=0.060 Sum_probs=237.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
.+|+.++|+.+|.+ .+| .+|.+.+|+.++++.. ..+....+..+....+++.+.+..+ .+.+++++++||++|+
T Consensus 27 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 46899999988854 566 5899999999988653 2233233455667777777776554 2457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+.. ++++|++.+++||++.......+ ..+..+|........ .|
T Consensus 104 ~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~d 152 (388)
T 1j32_A 104 FNLMLAMIE--------PGDEVIIPAPFWVSYPEMVKLAE-------------GTPVILPTTVETQFK----------VS 152 (388)
T ss_dssp HHHHHHHCC--------TTCEEEEESSCCTHHHHHHHHTT-------------CEEEEECCCGGGTTC----------CC
T ss_pred HHHHHHhcC--------CCCEEEEcCCCChhHHHHHHHcC-------------CEEEEecCCcccCCC----------CC
Confidence 999998732 56789999999998754322211 123344432110000 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccc-----cC
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH-----AE 481 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~-----~~ 481 (965)
+++|+++++ +++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.|.. ..... .+
T Consensus 153 ~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 227 (388)
T 1j32_A 153 PEQIRQAIT---PKTKLLVFNT-PSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE 227 (388)
T ss_dssp HHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH
T ss_pred HHHHHHhcC---cCceEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccC
Confidence 788888875 3577777777 789999875 6788999999999999999999999988765532 11111 33
Q ss_pred CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 482 ~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
..+++.++||.++ .| +++|++++++++++.+.. ...+++++.++++++++.++|+...+ ++..++++++.
T Consensus 228 ~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (388)
T 1j32_A 228 RSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR 300 (388)
T ss_dssp TEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred CEEEEeechhccCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4455668999997 45 899999999999887765 33556788899999999999873221 23556677777
Q ss_pred HHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-----CCEEEEeCCcccCH
Q psy8199 559 KKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-----GNTVYLMPPYILNK 631 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----~~~lR~~p~~~~t~ 631 (965)
+++.+.|+++ +++..+.+.|. +..+.+. ..+ .....+.+.|.+ +||++.++ .+++|++++ .++
T Consensus 301 ~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~ 370 (388)
T 1j32_A 301 RYMLDALNAM---PGLECPKPDGAFYMFPSIA-KTG----RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDL 370 (388)
T ss_dssp HHHHHHHHTC---TTCBCCCCCBTTEECCBCG-GGT----CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCH
T ss_pred HHHHHHHhhC---CCCcccCCCeeEEEEEecC-CCC----CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCH
Confidence 8888877664 45544445544 3333332 100 113467778875 79999874 378999975 689
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+.+
T Consensus 371 ~~i~~~~~~l~~~l 384 (388)
T 1j32_A 371 DTIKRGMERLEKFL 384 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 77
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=1e-25 Score=254.37 Aligned_cols=330 Identities=11% Similarity=0.037 Sum_probs=227.4
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCc-HHHHHHHHHHHhhc----CCC--CC-eEEEcCC
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLT----QYK--LG-HCFYGSD 322 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~----~~~--~~-~v~~~~s 322 (965)
.+|++++||.+|.+ .+| .+|++.+|+.++++... ...|+. ....++.+.+++++ +.. .+ ++++++|
T Consensus 22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT---TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG---GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 46889999988854 677 48999999999886521 122333 34455666666554 643 35 8999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.++...
T Consensus 96 ~~~a~~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~--------- 145 (376)
T 2dou_A 96 SQEGLAHLLLALTE--------PEDLLLLPEVAYPSYFGAARVASL-------------RTFLIPLREDGL--------- 145 (376)
T ss_dssp HHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHHHHHTTC-------------EEEEECBCTTSS---------
T ss_pred cHHHHHHHHHHhcC--------CCCEEEECCCCcHhHHHHHHHcCC-------------EEEEeeCCCCCC---------
Confidence 99999999987632 468899999999998654433322 223333311110
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~ 481 (965)
.|+++|++++. +++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|... .....+
T Consensus 146 ---~d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 217 (376)
T 2dou_A 146 ---ADLKAVPEGVW---REAKVLLLNY-PNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG 217 (376)
T ss_dssp ---BCGGGSCHHHH---HHEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT
T ss_pred ---CCHHHHHHhhc---cCceEEEECC-CCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 24567777775 2467777765 588999765 78899999999999999999999999887665421 222222
Q ss_pred ---CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHH
Q psy8199 482 ---IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRIS 555 (965)
Q Consensus 482 ---~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~ 555 (965)
....+.++||.++ .| +++|++++++++++.+.. ..+..+++.|+++++++.++|+...+ +...++++
T Consensus 218 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 290 (376)
T 2dou_A 218 AKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLER------VKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYR 290 (376)
T ss_dssp GGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHH------HHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2234457899997 45 899999999999988765 23445677899999999998864211 22345556
Q ss_pred HHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCc
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPY 627 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~ 627 (965)
++.+++.+.|+++ +..+.+. |+++++.+. ++. ....+.+.|.++||++.++ .+++|++++
T Consensus 291 ~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~- 358 (376)
T 2dou_A 291 ERALGMAEALKGV-----LSLLPPRATMYLWGRLP--EGV----DDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV- 358 (376)
T ss_dssp HHHHHHHHHHTTT-----SEECCCCBSSEEEEECC--TTC----CHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC-
T ss_pred HHHHHHHHHHHHh-----cCccCCCeeEEEEEECC--CCC----CHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec-
Confidence 6666666666543 3333443 556667664 211 1346778888899999874 379999976
Q ss_pred ccCHHHHHHHHHhhhcc
Q psy8199 628 ILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~ 644 (965)
.++++++++++++.+.
T Consensus 359 -~~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 359 -RPLEELLEAAKRIREA 374 (376)
T ss_dssp -SCHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 3889999999888754
No 78
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.94 E-value=3e-25 Score=249.25 Aligned_cols=322 Identities=9% Similarity=0.026 Sum_probs=229.5
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+++.++|+.++. ++++ .+|++.+|+.++++... .++.+...++.++++++++.+.+++++++||++|++.++
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~ 101 (363)
T 3ffh_A 30 GLTKITKLSSNE--NPLG-TSKKVAAIQANSSVETE-----IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLT 101 (363)
T ss_dssp TCSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCC-----BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred CCCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhh-----cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHH
Confidence 346899998873 4566 68999999998775432 334455678888899888766789999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+. .++++|++.+++|+++.......+ ..+..+|.... +. .|+++|
T Consensus 102 ~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~-~~-----------~d~~~l 148 (363)
T 3ffh_A 102 RVLL--------DTTTNTVMATPTFVQYRQNALIEG-------------AEVREIPLLQD-GE-----------HDLEGM 148 (363)
T ss_dssp HHHC--------STTCEEEEEESSCHHHHHHHHHHT-------------CEEEEEECCTT-SC-----------CCHHHH
T ss_pred HHHc--------cCCCEEEEcCCChHHHHHHHHHcC-------------CEEEEecCCCC-CC-----------cCHHHH
Confidence 9763 256889999999998744333322 13344554321 11 267888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc----ee
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD----FL 487 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD----iv 487 (965)
++++. +++++|+++. ++|++|.+. +.+.+.+|.+.|++ |+++|+||+|++|++ |...........+| +.
T Consensus 149 ~~~i~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 221 (363)
T 3ffh_A 149 LNAID---EKTTIVWICN-PNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITR 221 (363)
T ss_dssp HHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEE
T ss_pred HHhcc---cCCCEEEEeC-CCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEe
Confidence 88874 3577777777 699999877 55556666666666 999999999998877 65433333322233 44
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L 565 (965)
++||.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+..+. +...++++++.+++.+.|
T Consensus 222 s~sK~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 292 (363)
T 3ffh_A 222 TFSKIYGLAS-ARVGYGIADKEIIRQLNI--------VRPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA 292 (363)
T ss_dssp ESSSTTCCSS-CCCEEEEECHHHHHHHHH--------TCCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhhcCch-hceeeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899997 55 899999999999988875 224778999999999999963211 234455566666666666
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
++ ++++..+++.|.++.+.+. . ....+.+.|.++||++.++ .+++|++++ +++++++++++
T Consensus 293 ~~---~~g~~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~ 358 (363)
T 3ffh_A 293 KR---FEKVKLYPANGNFVLIDLG-I-------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIAL 358 (363)
T ss_dssp HH---CTTCEECCCCSSEEEEECS-S-------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHH
T ss_pred hh---CCCceECCCCCeEEEEECC-C-------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHH
Confidence 55 2456666778888877764 1 1446788899999999884 379999965 89999999988
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.+.
T Consensus 359 l~~~ 362 (363)
T 3ffh_A 359 LEKL 362 (363)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 79
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.94 E-value=2.3e-25 Score=256.78 Aligned_cols=341 Identities=15% Similarity=0.088 Sum_probs=237.0
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhcc----ccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~----~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~ 327 (965)
+..+|||.+|.+.. .++.++++.+++.++++... .|....+..+.+..+++.+.+..+. +.++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 45799999887643 45788999999999887631 2322233455566666666555565 568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++++.. +++.|++.+++||++.......+. .+..+|.... + .|
T Consensus 154 ~~~~~~l~~--------~Gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g------------~d 199 (448)
T 3aow_A 154 DLIGRVFLN--------PGDIVVVEAPTYLAALQAFNFYEP-------------QYIQIPLDDE-G------------MK 199 (448)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETT-E------------EC
T ss_pred HHHHHHHcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------EEEEeccCCC-C------------CC
Confidence 999998742 568899999999998544333221 2233332110 0 26
Q ss_pred HHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc----cccccc
Q psy8199 408 IFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACEHA 480 (965)
Q Consensus 408 ~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~ 480 (965)
+++|+++++. ...++++|++.|.++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|.. ..++..
T Consensus 200 ~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~ 278 (448)
T 3aow_A 200 VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE 278 (448)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTT
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCC
Confidence 7888888861 1235777755553688888764 7889999999999999999999999988665542 222222
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQ 556 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~~~~~~~ 556 (965)
+..+++.+|||.++.| +|+|++++++++++.+.. ..+..+++.|+++++++.++|+...- +...+.+++
T Consensus 279 ~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 351 (448)
T 3aow_A 279 GRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKMEI------AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKP 351 (448)
T ss_dssp SCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEccchhhcccc-ccEEEEEeCHHHHHHHHH------HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3345667899999866 899999999999988765 23345677899999999999864211 223444456
Q ss_pred HHHHHHHHHHcccCCC-ceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeC
Q psy8199 557 DMKKITKALTSLITHP-KIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMP 625 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~-~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p 625 (965)
+.+++.+.|++. .| ++..+.+ .|+++++.+. ++. ....+.+.|.++||++.|+ .+++|+++
T Consensus 352 ~~~~l~~~L~~~--~~~g~~~~~p~~g~~~~v~~~--~~~----~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~ 423 (448)
T 3aow_A 352 RRDAMLEALEEF--MPEGVKWTKPEGGMFIWVTLP--DGI----DSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNF 423 (448)
T ss_dssp HHHHHHHHHHHH--CCTTCEECCCSBSSEEEEECS--TTC----CHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEEC
T ss_pred HHHHHHHHHHHh--CCCCeEEeCCCccEEEEEEcC--CCC----CHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEe
Confidence 666666666542 23 3544444 4667777764 111 1346788899999999873 36899998
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+. .++++++++++++.+.+
T Consensus 424 ~~-~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 424 TY-VDEDKIMEGIKRLAETI 442 (448)
T ss_dssp SS-SCTHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHH
Confidence 75 48899999999987654
No 80
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.94 E-value=2.3e-25 Score=251.46 Aligned_cols=332 Identities=12% Similarity=0.023 Sum_probs=230.3
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHH
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAV 327 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~ 327 (965)
+.+| .+|||.+|. .+++ .+|.|.+|+.+++.....+....+..+...++++.+.+.++. +.+++++++||++|+
T Consensus 20 ~~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 20 TPKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CCSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred hccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 4578 999999885 4566 689999999988855544443444567788888888877765 568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+... +++++|++.+++||++.......+. .+..+|....... +
T Consensus 96 ~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~------------~ 144 (376)
T 3ezs_A 96 FNFPSFVLFD------YQNPTIAYPNPFYQIYEGAAKFIKA-------------KSLLMPLTKENDF------------T 144 (376)
T ss_dssp HHHHHHHTTT------CSSCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTS------------C
T ss_pred HHHHHHHcCC------CCCCEEEEecCCcHhHHHHHHHcCC-------------EEEEcccCCCCCc------------c
Confidence 9999987430 1268999999999987544333322 2333443211110 1
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc---------
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE--------- 478 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~--------- 478 (965)
+ +|++++.+ ++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.|......
T Consensus 145 ~-~l~~~~~~---~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 218 (376)
T 3ezs_A 145 P-SLNEKELQ---EVDLVILNS-PNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNE 218 (376)
T ss_dssp C-CCCHHHHH---HCSEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCT
T ss_pred h-hHHhhhcc---CCCEEEEcC-CCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHcccccccc
Confidence 1 34445543 234455544 489999766 67779999999999999999999999987776433321
Q ss_pred ccCCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD 557 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~ 557 (965)
..+....+.+|||.++ .| +++|++++++++++.+.. ..+..+++.|+++++++.++|+. .+..++.++.
T Consensus 219 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~ 288 (376)
T 3ezs_A 219 AFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKA------FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNI 288 (376)
T ss_dssp TCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH------HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHH
T ss_pred ccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHH------HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHH
Confidence 2344455668999996 45 899999999999988865 34556788999999999999873 2233333333
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec---------CCEEEEeCCc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI---------GNTVYLMPPY 627 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------~~~lR~~p~~ 627 (965)
.+..++.+.+..+ ++. .++.|.++++.+. + ...+.+.|.+ +||++.|+ .+++|++++
T Consensus 289 ~~~~~~~l~~~l~--~~~-~~~~~~~~~~~~~--~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~- 355 (376)
T 3ezs_A 289 YANNLKLARKIFK--NTL-IYPYSFYVYLPVQ--N-------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV- 355 (376)
T ss_dssp HHHHHHHHHHHST--TCC-CCSBSSEEEEECS--C-------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC-
T ss_pred HHHHHHHHHHHhc--CCC-CCCcceEEEEECC--C-------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc-
Confidence 3333333333211 233 4566777777663 1 3467778887 89999863 379999965
Q ss_pred ccCHHHHHHHHHhhhcccc
Q psy8199 628 ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~ 646 (965)
.++++++++++++.+++.
T Consensus 356 -~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 356 -YDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp -SCHHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHHHH
Confidence 499999999999876543
No 81
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.93 E-value=6.7e-26 Score=257.89 Aligned_cols=338 Identities=12% Similarity=0.058 Sum_probs=233.0
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCC-cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
++.++||.+|.+ .+.||.+|++.+++.++++...... ..|. .....++.+.++++++.+.++|++++||++|++.++
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG 108 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHH
Confidence 568999988875 3458899999999999887632111 1222 223456777777777655679999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+.. ++++|++.+++||++.......+. .+..+|.... + .|+++|
T Consensus 109 ~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~-~------------~d~~~l 154 (397)
T 2zyj_A 109 KVFLD--------EGSPVLLEAPSYMGAIQAFRLQGP-------------RFLTVPAGEE-G------------PDLDAL 154 (397)
T ss_dssp HHHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETT-E------------ECHHHH
T ss_pred HHhCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------EEEecCcCCC-C------------CCHHHH
Confidence 97732 457899999999998654433221 1223332110 0 267889
Q ss_pred HHHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCC---cc-
Q psy8199 412 EILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIW---PD- 485 (965)
Q Consensus 412 e~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~---pD- 485 (965)
++++++. ++++| ++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|.. .....++.. ++
T Consensus 155 ~~~l~~~--~~~~v~~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (397)
T 2zyj_A 155 EEVLKRE--RPRFLYLIPS-FQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGV 230 (397)
T ss_dssp HHHHHHC--CCSCEEECCB-SCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCE
T ss_pred HHHHhhc--CCeEEEECCC-CcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeE
Confidence 9888752 34455 3444 588889765 7889999999999999999999999998776652 222223222 22
Q ss_pred --eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHH
Q psy8199 486 --FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKK 560 (965)
Q Consensus 486 --ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~~~~~~~~~~~~~~ 560 (965)
+.++||.+++| +++|++++++++++.+.. ..+..+++.|+++++++.++|+... -+...++++++.++
T Consensus 231 i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (397)
T 2zyj_A 231 IYLGSFSKVLSPG-LRVAFAVAHPEALQKLVQ------AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQA 303 (397)
T ss_dssp EEEEESTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccccccc-ceeEEEecCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44789999966 799999999999888764 2334566779999999988886321 12234445556666
Q ss_pred HHHHHHcccCCC-ceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeCCccc
Q psy8199 561 ITKALTSLITHP-KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYIL 629 (965)
Q Consensus 561 l~~~L~~l~~~~-~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p~~~~ 629 (965)
+.+.|++. .| ++..+ +..|+++.+.+. ++ .....+.+.|.++||++.++ .+++|++++..
T Consensus 304 l~~~L~~~--~~~g~~~~~~~~g~~~~~~~~--~~----~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~- 374 (397)
T 2zyj_A 304 MLHALDRE--VPKEVRYTRPKGGMFVWMELP--KG----LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL- 374 (397)
T ss_dssp HHHHHHHH--SCTTSEECCCSBSSEEEEECS--TT----CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-
T ss_pred HHHHHHHH--CCCCeEEccCCccEEEEEEcC--CC----CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-
Confidence 66666542 23 34433 345777777764 11 11346788899999999872 36899998864
Q ss_pred CHHHHHHHHHhhhcccc
Q psy8199 630 NKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~ 646 (965)
++++++++++++.+.+.
T Consensus 375 ~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 375 DREGIAEGVRRLGRALK 391 (397)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999999887654
No 82
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.93 E-value=6.3e-26 Score=259.06 Aligned_cols=335 Identities=10% Similarity=0.029 Sum_probs=232.3
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCCCC---CeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~~~---~~v~~~~sGseA~~~ 329 (965)
++|||.+|... +++ .+|+|.+|+.++++... .+....+..+...++++.+++.++... +++++++||++|++.
T Consensus 40 ~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~ 117 (407)
T 3nra_A 40 RPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 117 (407)
T ss_dssp CCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred ceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 59999887543 444 68999999999987632 233344667888999999999886532 799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-----CCCCCCCCCChhHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-----DSRNINKGNSANEIA 404 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 404 (965)
+++.+. .++++|++.+++|+++.......+. .+..+|.. +....
T Consensus 118 ~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~---------- 166 (407)
T 3nra_A 118 AVAATV--------ARGDKVAIVQPDYFANRKLVEFFEG-------------EMVPVQLDYVSADETRAG---------- 166 (407)
T ss_dssp HHHTTC--------CTTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEBCCCSSCCSSCC----------
T ss_pred HHHHhC--------CCCCEEEEcCCcccchHHHHHHcCC-------------EEEEeecccccccCcCCC----------
Confidence 998763 2568899999999987544333222 22333331 01111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC--
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE-- 481 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~-- 481 (965)
.|+++|++++.+ ++.+|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|..+ ....++
T Consensus 167 -~d~~~l~~~l~~---~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~ 240 (407)
T 3nra_A 167 -LDLTGLEEAFKA---GARVFLFSN-PNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 240 (407)
T ss_dssp -BCHHHHHHHHHT---TCCEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred -cCHHHHHHHHhh---CCcEEEEcC-CCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence 268899999874 334444444 488899765 78889999999999999999999999987776532 333332
Q ss_pred ---CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHH
Q psy8199 482 ---IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRIS 555 (965)
Q Consensus 482 ---~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~ 555 (965)
...++.+|||+++ .| +++|++++++++++.+.. ..+..+++.++++++++.++|+...+ ++..++.+
T Consensus 241 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 313 (407)
T 3nra_A 241 DAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEK------LQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQ 313 (407)
T ss_dssp CGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHH------HHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHH
T ss_pred cCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHH------HHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2234557899997 55 899999999999988765 34556778889999888887752111 22345555
Q ss_pred HHHHHHHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCC
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPP 626 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~ 626 (965)
++.+++.+.|+++ +++..+.+.+ .++.+.+. ..+ .....+.+.|.+ +||++.++ .+++|++++
T Consensus 314 ~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 314 AIRDELLHVLRGC---EGVFARTPQAGSYLFPRLP-KLA----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHHHHHTS---TTCBCCCCSBSSEECCBCC-CBS----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHHHHHhcC---CCceeccCCeeEEEEEeCC-CCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 6666666666543 5565555554 66665553 111 113457777765 69999873 368999976
Q ss_pred cccCHHHHHHHHHhhhccc
Q psy8199 627 YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~ 645 (965)
.++++++++++++.+++
T Consensus 386 --~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 386 --QDHEAAVAAARRIVTLV 402 (407)
T ss_dssp --SCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHH
Confidence 49999999999887654
No 83
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.93 E-value=1.8e-25 Score=251.70 Aligned_cols=322 Identities=16% Similarity=0.091 Sum_probs=229.1
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 328 (965)
.|+.++||.++.. .+|+ +|++.+++.++++.. ..+....+..+....+++.+.+..+ .+.+++++++||++|++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 5889999988754 6786 899999999998763 2232223345666677777765443 35579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.+. .++++|++.+++||++.......+. .+..+| .|+
T Consensus 104 ~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~------------------~d~ 144 (370)
T 2z61_A 104 FALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGA-------------KPVFCD------------------FTV 144 (370)
T ss_dssp HHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTC-------------EEEEEC------------------SSH
T ss_pred HHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeC------------------CCH
Confidence 9999873 2458899999999998544332221 223333 157
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCC-cce
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIW-PDF 486 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~-pDi 486 (965)
++|+++++ +++++|++++ ++|++|.+.+ .+ |.++|++||+++|+||+|+++.+.|.......+ +.. .|+
T Consensus 145 ~~l~~~l~---~~~~~v~~~~-p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i 215 (370)
T 2z61_A 145 ESLEEALS---DKTKAIIINS-PSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTI 215 (370)
T ss_dssp HHHHHHCC---SSEEEEEEES-SCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEE
T ss_pred HHHHHhcc---cCceEEEEcC-CCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEE
Confidence 88888875 3567777776 7899998876 33 999999999999999999988666643333332 122 233
Q ss_pred --eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-Hhc--ccHHHHHHHHHHH
Q psy8199 487 --LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNK--DNILQRISQDMKK 560 (965)
Q Consensus 487 --vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~--~~~~~~~~~~~~~ 560 (965)
.++||.++ .| +++|++++++++++.+.. ..+..+++.|+++++++.++|+. ..+ +...++++++.++
T Consensus 216 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (370)
T 2z61_A 216 LINGFSKLYAMTG-WRIGYVISNDEIIEAILK------LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRL 288 (370)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhccCCcc-ceEEEEEECHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 47899997 55 799999999999888765 33456778899999999998865 221 3456777788888
Q ss_pred HHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 561 ITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
+.+.|+++ ++..+.+. |.++.+.+. + ....+.+.|. ++||.+.++ .+++|++++ .++
T Consensus 289 l~~~L~~~----g~~~~~~~~~~~~~~~~~--~------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~ 354 (370)
T 2z61_A 289 VLKYVKDF----GWEVNNPIGAYYVFPNIG--E------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSY 354 (370)
T ss_dssp HHHHHHHT----TCBCCCCCBTTEECCBCS--S------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCH
T ss_pred HHHHHHHc----CCeecCCCcceEEEEecC--C------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCH
Confidence 88888765 23333344 445555543 1 1346777887 789999874 468999977 699
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+.+
T Consensus 355 ~~i~~~~~~l~~~l 368 (370)
T 2z61_A 355 ENIKEGLERIKEFL 368 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886543
No 84
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.93 E-value=2.1e-25 Score=256.09 Aligned_cols=345 Identities=12% Similarity=0.047 Sum_probs=234.7
Q ss_pred EecCCcccccccccchhc-cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC-----CCCCeEEEcCC
Q psy8199 249 ITFSGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-----YKLGHCFYGSD 322 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~~~v~~~~s 322 (965)
.+.+|+.+||+..|.... +-...+|+|.+|+.++++..... ...+.....++.+.++++++ ...+++++++|
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g 126 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG 126 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence 345688999999886422 12346899999999998763211 11122334455566666554 35679999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChh
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSAN 401 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 401 (965)
|++|++.+++.+.. ++++|++.+++|+++.......+. .+..+|... ....
T Consensus 127 ~t~al~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------- 178 (427)
T 3dyd_A 127 CSQAIDLCLAVLAN--------PGQNILVPRPGFSLYKTLAESMGI-------------EVKLYNLLPEKSWE------- 178 (427)
T ss_dssp HHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTE-------
T ss_pred cHHHHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecccccCCC-------
Confidence 99999999998742 568899999999988544433332 222333211 0000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~ 480 (965)
.|+++|++++++ ++.+|++.. ++|++|.+. +++.+++|.++|++||+++|+||+|++|++.|.. .....+
T Consensus 179 ----~d~~~l~~~l~~---~~~~v~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~ 249 (427)
T 3dyd_A 179 ----IDLKQLEYLIDE---KTACLIVNN-PSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL 249 (427)
T ss_dssp ----ECHHHHHSSCCT---TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred ----CCHHHHHHHhcc---CCCEEEEEC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence 267888877742 355555555 588999765 7888999999999999999999999999887753 345555
Q ss_pred CCCccee---eeccccCCCcccceeeeec-------HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---
Q psy8199 481 EIWPDFL---CLSKGITGGYLPLSLVMTT-------DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--- 547 (965)
Q Consensus 481 ~~~pDiv---t~sK~l~gG~~pig~v~~~-------~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--- 547 (965)
+..++++ +|||.++.+++|+|+++++ +++++.+.. ....+++.++++++++.++|+....
T Consensus 250 ~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~a~~~~L~~~~~~~~ 322 (427)
T 3dyd_A 250 STDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK-------LSQRILGPCTIVQGALKSILCRTPGEFY 322 (427)
T ss_dssp CSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH-------HHHHHCCSCHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH-------HHhccCCCCHHHHHHHHHHHHhcCHHHH
Confidence 6666676 7899865533899999987 467766654 1224678899999999999985322
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----CCE
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNT 620 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----~~~ 620 (965)
++..++++++.+++.+.|+++ |++..+.+. |+++.+.+. ....+.......+.+.|+ ++||++.|+ .++
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~---~g~~~~~p~~g~~~~~~l~-~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~ 398 (427)
T 3dyd_A 323 HNTLSFLKSNADLCYGALAAI---PGLRPVRPSGAMYLMVGIE-MEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNF 398 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---TTEEEECCSBTTEEEEEEC-GGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCceecCCCeeEEEEEecC-HhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCe
Confidence 234566666777777777654 677655454 556655653 110000011345666765 899999885 379
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|++ +..++++++++++++.+.+
T Consensus 399 iRis--~~~~~e~i~~~l~~l~~~l 421 (427)
T 3dyd_A 399 IRVV--ITVPEVMMLEACSRIQEFC 421 (427)
T ss_dssp EEEE--SCSCHHHHHHHHHHHHHHH
T ss_pred EEEE--ECCCHHHHHHHHHHHHHHH
Confidence 9999 5589999999999887654
No 85
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=3.7e-25 Score=250.92 Aligned_cols=332 Identities=14% Similarity=0.109 Sum_probs=233.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
.|+.++|+.++.+ .+|+ +|.+.+++.++++... .+....+..+....+++.+.+..+. +.+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 5889999988754 5775 8999999999987632 2222223455666677666655443 4579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 407 (965)
.+++.+. .++++|++.+++||++.......+. .+..+|.... ... .|
T Consensus 116 ~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~d 163 (389)
T 1o4s_A 116 NAFMALL--------DPGDEVIVFSPVWVSYIPQIILAGG-------------TVNVVETFMSKNFQ-----------PS 163 (389)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCGGGTTC-----------CC
T ss_pred HHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecCCccCCC-----------CC
Confidence 9999773 2568899999999997543322221 2334443210 011 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC--CCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE--IWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~--~~pD 485 (965)
+++|+++++ +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|.......+. -..|
T Consensus 164 ~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~ 238 (389)
T 1o4s_A 164 LEEVEGLLV---GKTKAVLINS-PNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI 238 (389)
T ss_dssp HHHHHHTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTE
T ss_pred HHHHHHhcc---cCceEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcE
Confidence 788888774 3567777777 788899765 78899999999999999999999999886655422222221 1234
Q ss_pred e--eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 486 F--LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 486 i--vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
+ .++||.++ .| +++|++++++++++.+.. ....++++.++++++++.++|+.. .+.+.++++++.+++.
T Consensus 239 i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~ 310 (389)
T 1o4s_A 239 VYINGFSKSHSMTG-WRVGYLISSEKVATAVSK------IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVV 310 (389)
T ss_dssp EEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcc-cceEEEEeCHHHHHHHHH------HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence 3 47899997 45 799999999999887765 234567888999999988887532 3456788888888998
Q ss_pred HHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----CCEEEEeCCcccCHHHHH
Q psy8199 563 KALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~ 635 (965)
+.|+++ ++..+.+. |.++.+.+. .+ ...+.+.|. ++||++.|+ .+++|++++ .++++++
T Consensus 311 ~~L~~~----g~~~~~~~~~~~~~~~~~-~~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~ 376 (389)
T 1o4s_A 311 ERLKKM----GVKFVEPEGAFYLFFKVR-GD-------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLT 376 (389)
T ss_dssp HHHHHT----TCCCCCCSBSSEEEEECS-SC-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHH
T ss_pred HHHHhc----CCeeecCCcceEEEEeCC-CC-------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHH
Confidence 888775 23223333 445555542 11 346778887 899999875 269999977 4899999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+.+
T Consensus 377 ~~l~~l~~~l 386 (389)
T 1o4s_A 377 EALDRIEDFL 386 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998886543
No 86
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.93 E-value=1.7e-25 Score=254.00 Aligned_cols=335 Identities=13% Similarity=0.059 Sum_probs=224.8
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
..+|++||||.+|.. .++. +|+|.+|+.++++.. ..+....+..+.+..+++.+.+..+ .+.++|++++||++|
T Consensus 27 ~~~g~~~i~l~~g~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~a 103 (391)
T 3h14_A 27 EEAGRRIIHMEVGQP--GTGA-PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGG 103 (391)
T ss_dssp HHTTCCCEECCCSSC--SSCS-CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred HhcCCCeEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHH
Confidence 468999999998864 4553 899999999988753 2222223345666777777766544 356799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+.. ++++|++.+++|+++.......+. .+..+|........ .
T Consensus 104 l~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~ 152 (391)
T 3h14_A 104 FLLAFTALFD--------SGDRVGIGAPGYPSYRQILRALGL-------------VPVDLPTAPENRLQ----------P 152 (391)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCGGGTTS----------C
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeecCcccCCC----------C
Confidence 9999987742 568899999999987543332221 23344432111000 1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|+++|+++ ++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.......+ .+++
T Consensus 153 d~~~l~~~------~~~~v~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~ 222 (391)
T 3h14_A 153 VPADFAGL------DLAGLMVAS-PANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL--TDEC 222 (391)
T ss_dssp CHHHHTTS------CCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CSSS
T ss_pred CHHHHHhc------CCeEEEECC-CCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc--CCCE
Confidence 56666543 345556656 689999876 6777999999999999999999999998776653222222 3444
Q ss_pred e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q psy8199 487 L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 561 (965)
Q Consensus 487 v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l 561 (965)
+ ++||.++ .| +++|++++++++++.+.. .....+++.++++++++.++|+..+ -+...++++++.+++
T Consensus 223 i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 223 YVINSFSKYFSMTG-WRVGWMVVPEDQVRVVER------IAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp EEEEESSSTTCCTT-SCCEEEECCGGGHHHHHH------HHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhccCCcc-ceeEEEEeCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 4 7899997 56 899999999999888765 3455678899999999999886111 022445566666666
Q ss_pred HHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec--------CCEEEEeCCcccCH
Q psy8199 562 TKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI--------GNTVYLMPPYILNK 631 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--------~~~lR~~p~~~~t~ 631 (965)
.+.|+++ +....+++.| .++.+.+. ..+ .....+.+.|+++ ||++.|+ .+++|++++. ++
T Consensus 296 ~~~l~~~---~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~ 365 (391)
T 3h14_A 296 LERLPKA---GFTRIAPPDGAFYVYADVS-DLT----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--AT 365 (391)
T ss_dssp HHHHHHH---TCCCBCCCCBTTEEEEECT-TTC----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CH
T ss_pred HHHHHHc---CCCcccCCCeeEEEEEecC-ccC----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CH
Confidence 6666654 2222345555 45555553 111 1134577777765 9999873 2589999765 88
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+..
T Consensus 366 ~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 366 ADIEEGLDRLEAFM 379 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887544
No 87
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.93 E-value=5.2e-25 Score=253.69 Aligned_cols=351 Identities=13% Similarity=0.027 Sum_probs=233.1
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc-------------cccCCCCcHHHHHHHHHHHhhcC---
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-------------VMLSNLTHKPVIKLSEKLSSLTQ--- 311 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-------------~~~~~~~~~~~~~la~~l~~~~~--- 311 (965)
.||.++|.+.++..|...++++ +|.+.+++.++.....+ |....+..+....+++.+.+..+
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 4889999988887777777776 68888888876553321 22122233444455555443321
Q ss_pred -CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC
Q psy8199 312 -YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 390 (965)
Q Consensus 312 -~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (965)
...+++++++||++|++.++++++. +++.|++.+++|++.........|. .+..++...
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g~------------~~~~~~~~~ 167 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCLAD--------PGEAVLIPTPYYPGFDRDLKWRTGV------------EIVPIHCTS 167 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHHCC--------TTCEEEEEESCCTTHHHHTTTTTCC------------EEEEEECCG
T ss_pred CCCHHHEEEcCChHHHHHHHHHHhcC--------CCCeEEECCCccccHHHHHHHhcCC------------EEEEeeCCC
Confidence 3467999999999999999998743 5688999999998875433312221 223333321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC
Q psy8199 391 SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 467 (965)
Q Consensus 391 ~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 467 (965)
..... .|+++|++++++. ..++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|++
T Consensus 168 ~~~~~----------~d~~~l~~~l~~~~~~~~~~~~v~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~ 235 (435)
T 3piu_A 168 SNGFQ----------ITETALEEAYQEAEKRNLRVKGVLVTN-PSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSG 235 (435)
T ss_dssp GGTSC----------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred ccCCc----------CCHHHHHHHHHHHHhcCCCeEEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccc
Confidence 10000 2678888888652 34677787777 689999765 677799999999999999999999998
Q ss_pred CCccccccc-ccccCCC---------cc----eeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCC
Q psy8199 468 CGRTGKFFA-CEHAEIW---------PD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGN 531 (965)
Q Consensus 468 ~gr~G~~~~-~~~~~~~---------pD----ivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~ 531 (965)
+++.|..+. ....... +| +.+|||+++ +| +|+|++++ ++++.+.+.. +..++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--------~~~~~~~~ 306 (435)
T 3piu_A 236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSSFGLVS 306 (435)
T ss_dssp GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH--------HGGGSCCC
T ss_pred cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHH--------HhhcCCCC
Confidence 777665332 2111111 44 457999997 56 89999999 5677776654 23455678
Q ss_pred HHHHHHHHHHHHHHh--c---ccHHHHHHHHHHHHHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHH
Q psy8199 532 PLACCAALATLEIFN--K---DNILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFV 605 (965)
Q Consensus 532 ~~~~aaa~a~L~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~ 605 (965)
+++++++.++|+... + +...++++++.+++.+.|+++ ++..+.+.| +++++.+..............+.+
T Consensus 307 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 382 (435)
T 3piu_A 307 SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS----GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWK 382 (435)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEEcccccccCCchhHHHHHH
Confidence 999998888886322 1 234555666667777777654 455556665 777777741000000112346777
Q ss_pred HHHHc-CcEEeec-------CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 606 AALKN-ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 606 ~l~~~-Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.|+++ ||++.|+ .+++||+++.. ++++++++++++.+++.
T Consensus 383 ~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~ 430 (435)
T 3piu_A 383 KIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG 430 (435)
T ss_dssp HHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH
Confidence 88776 9999873 36899998655 99999999999876553
No 88
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.88 E-value=5.8e-28 Score=274.38 Aligned_cols=345 Identities=11% Similarity=0.091 Sum_probs=231.2
Q ss_pred eEEEecCCc--ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEc
Q psy8199 246 SKLITFSGK--RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~--~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~ 320 (965)
+|+||.+|+ .++||..+.. .++ .+|++.+|+.+++... ..+.. ...+....+++.+.+..+ .+.++|+++
T Consensus 21 ~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~~~~~~v~~~ 95 (392)
T 3b1d_A 21 TYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTY--ASDELLQAVLDWEKSEHQYSFDKEDIVFV 95 (392)
Confidence 899999999 9999987743 455 5899999999988653 22221 144555666666665554 356799999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|++.+++++.. ++++|++.+++||++...+...+. .+..+|.....+
T Consensus 96 ~g~~~a~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g------- 147 (392)
T 3b1d_A 96 EGVVPAISIAIQAFTK--------EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKEENG------- 147 (392)
Confidence 9999999999998743 567899999999998654433322 122222210000
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc----ccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK----FFA 476 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~~ 476 (965)
.+ ..|+++|++++++ .++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|. .+.
T Consensus 148 -~~-~~d~~~l~~~l~~--~~~~~v~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 221 (392)
T 3b1d_A 148 -LF-QIDFEQLENDIVE--NDVKLYLLCN-PHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNT 221 (392)
Confidence 00 0367888888752 2455666666 688899764 677899999999999999999999999977663 222
Q ss_pred ccc--cCCCcceeeeccccC-CCcccceeeeecH-HHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHhc--cc
Q psy8199 477 CEH--AEIWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFNK--DN 549 (965)
Q Consensus 477 ~~~--~~~~pDivt~sK~l~-gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~~--~~ 549 (965)
+.. .+..+++.+|||+++ +| +|+|++++++ ++++.+.. .....++ +.|+++++++.++|+...+ +.
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 294 (392)
T 3b1d_A 222 VSPDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKH------QQLVNNHHEVSSLGYIATETAYRYGKPWLVA 294 (392)
Confidence 222 344566778999997 56 7999999875 48877764 1223333 4689999999999874211 12
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNT 620 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~ 620 (965)
..++++++.+++.+.|++ ..|++..+++.|.|+. +++. ..+ .....+.+.|+ ++||++.|+ .++
T Consensus 295 ~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~i~~~-~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~ 367 (392)
T 3b1d_A 295 LKAVLEENIQFAVEYFAQ--EAPRLKVMKPQGTYLIWLDFS-DYG----LTDDALFTLLHDQAKVILNRGSDYGSEGELH 367 (392)
Confidence 333344444444444433 1456666778888775 5654 110 11335777786 789999873 257
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|++ +..++++++++++++.+++
T Consensus 368 iRi~--~~~~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 368 ARLN--IAAPKSLVEEICKRIVCCL 390 (392)
Confidence 9999 4557888998888876543
No 89
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.93 E-value=1.8e-24 Score=245.09 Aligned_cols=333 Identities=11% Similarity=0.063 Sum_probs=231.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~ 329 (965)
..++||.++.. .+| .+|++.+++.++++.. ..+....+..+....+++.+.+.++ .+.+ ++++++||++|++.
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 36899988754 466 6899999999998762 2333223355666777777766555 3466 99999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+. .++++|++.+++||++.......+ ..+..+|.....+. .|++
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~-----------~d~~ 154 (386)
T 1u08_A 107 AITALV--------RNGDEVICFDPSYDSYAPAIALSG-------------GIVKRMALQPPHFR-----------VDWQ 154 (386)
T ss_dssp HHHHHC--------CTTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCTTTCC-----------CCHH
T ss_pred HHHHhC--------CCCCEEEEeCCCchhHHHHHHHcC-------------CEEEEeecCcccCc-----------CCHH
Confidence 999773 246889999999998754322221 12334443221111 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc----cccc-ccCCCc
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACE-HAEIWP 484 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~-~~~~~p 484 (965)
+|++++. +++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.. .... ..+...
T Consensus 155 ~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i 229 (386)
T 1u08_A 155 EFAALLS---ERTRLVILNT-PHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAV 229 (386)
T ss_dssp HHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEE
T ss_pred HHHHhhc---ccCEEEEEeC-CCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEE
Confidence 8888874 4577777777 789999765 7889999999999999999999999988666641 1221 234445
Q ss_pred ceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKI 561 (965)
Q Consensus 485 Divt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l 561 (965)
.+.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+...+ +...++++++.+++
T Consensus 230 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (386)
T 1u08_A 230 AVSSFGKTYHMTG-WKVGYCVAPAPISAEIRK------VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL 302 (386)
T ss_dssp EEEEHHHHTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred EEecchhhcCCcc-cceEEEEcCHHHHHHHHH------HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 5668999997 45 899999999999888765 23445788899999999999975421 23556666677777
Q ss_pred HHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec---------CCEEEEeCCcccC
Q psy8199 562 TKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYILN 630 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------~~~lR~~p~~~~t 630 (965)
.+.|+++ ++..+.+. |.++++.+. +.. ......+.+.|. ++||++.|+ .+++||+++ .+
T Consensus 303 ~~~L~~~----g~~~~~~~~g~~~~~~~~--~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~ 372 (386)
T 1u08_A 303 VNALNES----RLEILPCEGTYFLLVDYS--AVS--TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KK 372 (386)
T ss_dssp HHHTTSS----SCEECCCCBSSEEEEECT--TTC--CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SC
T ss_pred HHHHHHC----CCeecCCCceEEEEEecC--CCC--CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CC
Confidence 7766553 34433344 567777664 110 011345667676 689999863 268999976 58
Q ss_pred HHHHHHHHHhhhc
Q psy8199 631 KNEIQHMTSAIFQ 643 (965)
Q Consensus 631 ~~~i~~~~~~l~~ 643 (965)
+++++++++++.+
T Consensus 373 ~~~i~~~~~~l~~ 385 (386)
T 1u08_A 373 ESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 90
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.93 E-value=4.2e-25 Score=249.81 Aligned_cols=325 Identities=11% Similarity=0.084 Sum_probs=232.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..++|+.+|.. .++ .+|.+.+++.++++...++. ......++.+.++++++.+.+++++++||++|++.+++.
T Consensus 25 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~----~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~ 97 (381)
T 1v2d_A 25 LGAVNLGQGFP--SNP-PPPFLLEAVRRALGRQDQYA----PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS 97 (381)
T ss_dssp HTCEECCCCSC--SSC-CCHHHHHHHHHHTTTSCSCC----CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence 35899988754 456 68999999999987622221 122356788888888876667899999999999999998
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC---CCCCCCCCCChhHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~ 410 (965)
+. .++++|++.+++||++....... | ..+..+|.+ .. .. .|+++
T Consensus 98 ~~--------~~gd~Vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~~-~~-----------~d~~~ 144 (381)
T 1v2d_A 98 LV--------GPGDEVVVLEPFFDVYLPDAFLA-G------------AKARLVRLDLTPEG-FR-----------LDLSA 144 (381)
T ss_dssp HC--------CTTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECEEETTE-EE-----------CCHHH
T ss_pred hC--------CCCCEEEEcCCCchhHHHHHHHc-C------------CEEEEEeCCCCCcc-CC-----------cCHHH
Confidence 73 35688999999999975432221 1 123334432 11 11 26788
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccc--ccCCCccee
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACE--HAEIWPDFL 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~--~~~~~pDiv 487 (965)
|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|++|.. |. ..... ..+..+++.
T Consensus 145 l~~~l~---~~~~~v~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~ 218 (381)
T 1v2d_A 145 LEKALT---PRTRALLLNT-PMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVG 218 (381)
T ss_dssp HHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEE
T ss_pred HHHhcC---cCCEEEEECC-CCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEe
Confidence 887764 4577777777 799999875 678899999999999999999999998743 42 11111 345566677
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--hc--ccHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--NK--DNILQRISQDMKKIT 562 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~~--~~~~~~~~~~~~~l~ 562 (965)
++||.++ .| +++|++++++++++.+.. ..+..+++.++++++++.++|+.. .+ +...++++++.+++.
T Consensus 219 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 291 (381)
T 1v2d_A 219 SAGKRLEATG-YRVGWIVGPKEFMPRLAG------MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA 291 (381)
T ss_dssp EHHHHTTCGG-GCCEEEECCTTTHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 8999887 45 799999999998887764 233457788999999999999865 22 345677777888888
Q ss_pred HHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeCCcccCHH
Q psy8199 563 KALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYILNKN 632 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p~~~~t~~ 632 (965)
+.|++. ++..+.+. |.++.+.+. +. + +.+.+.++||++.++ .+++|++++. +++
T Consensus 292 ~~L~~~----g~~~~~~~~~~~~~~~~~--~~-------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~ 355 (381)
T 1v2d_A 292 GGLRAM----GLRVYVPEGTYFLMAELP--GW-------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEE 355 (381)
T ss_dssp HHHHHT----TCCEECCSBSSEEEEECT--TC-------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHH
T ss_pred HHHHHC----CCEecCCCcceEEEEecC--hH-------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHH
Confidence 888764 33333444 556666653 21 1 556678999999873 3689999775 899
Q ss_pred HHHHHHHhhhccccc
Q psy8199 633 EIQHMTSAIFQTFNE 647 (965)
Q Consensus 633 ~i~~~~~~l~~~~~~ 647 (965)
+++++++++.+.+.+
T Consensus 356 ~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 356 ELHLALERLGRVVNS 370 (381)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998766543
No 91
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.93 E-value=1.5e-24 Score=244.18 Aligned_cols=320 Identities=12% Similarity=0.059 Sum_probs=223.0
Q ss_pred ccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhh--cCCCCCeEEEcCChhHHHHHH
Q psy8199 257 LDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSL--TQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 257 lD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~--~~~~~~~v~~~~sGseA~~~A 330 (965)
+||.++.. ++| .+|++.+++.+++++. ..+....+ .+....+++.+.+. .+.+.+++++++||++|++.+
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 89888754 577 7899999999998763 11211111 23334444444443 344567899999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+.. ++++|++.+++||++.......+. .+..+|..... . .|+++
T Consensus 109 ~~~l~~--------~gd~Vl~~~~~y~~~~~~~~~~g~-------------~~~~v~~~~~~-~-----------~d~~~ 155 (369)
T 3cq5_A 109 LQAFGG--------PGRTALGFQPSYSMHPILAKGTHT-------------EFIAVSRGADF-R-----------IDMDV 155 (369)
T ss_dssp HHHHCS--------TTCEEEEEESSCTHHHHHHHHTTC-------------EEEEEECCTTS-S-----------CCHHH
T ss_pred HHHhcC--------CCCEEEEcCCChHHHHHHHHHcCC-------------EEEEecCCcCC-C-----------CCHHH
Confidence 987732 468899999999988544333221 23344432211 1 26788
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccC-CCcceee
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAE-IWPDFLC 488 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~-~~pDivt 488 (965)
|++++++. ++++|++++ ++|++|.+.+ ++++.++|+.+++++|+||+|++|++....... +.++ ..+.+.+
T Consensus 156 l~~~i~~~--~~~~v~~~~-~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s 228 (369)
T 3cq5_A 156 ALEEIRAK--QPDIVFVTT-PNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRT 228 (369)
T ss_dssp HHHHHHHH--CCSEEEEES-SCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEE
T ss_pred HHHHhhcc--CCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEe
Confidence 88888642 356677777 7999998876 667777788888999999999988643222221 2233 3345668
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 566 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~ 566 (965)
+||+++ +| +|+|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.|+
T Consensus 229 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (369)
T 3cq5_A 229 MSKAFDFAG-GRLGYFVANPAFIDAVML--------VRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLE 299 (369)
T ss_dssp SSSTTSCGG-GCCEEEEECTHHHHHHHT--------TSCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred chHhcCCcc-cceEEEEeCHHHHHHHHH--------cCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 55 799999999999888865 22456789999999999997432 13456777788888888887
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+. ++..+++.|.++.+.+. .+ ...+.+.|.++||++.++ .+++|++++ ++++++++++++.+.
T Consensus 300 ~~----g~~~~~~~~~~~~~~~~-~~-------~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 300 EL----GYAVVPSESNFVFFGDF-SD-------QHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEI 364 (369)
T ss_dssp HH----TCEEECCSSSEEEEECC-SS-------HHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred hC----CCEECCCCCeEEEEECC-CC-------HHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 63 34445677888877653 11 345778888999999986 479999976 789999999887654
No 92
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.93 E-value=7.5e-25 Score=248.49 Aligned_cols=335 Identities=13% Similarity=0.085 Sum_probs=232.6
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCe-EEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGH-CFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~-v~~~~sGseA~~~ 329 (965)
..++||.++.. .+| .+|++.+++.++++.. ..+....+..+....+++.+.+..+ .+.++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 46899988753 466 6899999999998763 2232222345666777777766555 35678 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+. .++++|++.+++||++...+...+. .+..+|.....+.. .|++
T Consensus 103 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~d~~ 151 (389)
T 1gd9_A 103 GLSAFL--------KDGEEVLIPTPAFVSYAPAVILAGG-------------KPVEVPTYEEDEFR----------LNVD 151 (389)
T ss_dssp HHTTTC--------CTTCEEEEEESCCTTHHHHHHHHTC-------------EEEEEECCGGGTTC----------CCHH
T ss_pred HHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCC-------------EEEEeccCCccCCC----------CCHH
Confidence 998763 2568899999999997543322211 23344432100000 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-CC-Ccce
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EI-WPDF 486 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~-~pDi 486 (965)
+|++++++ ++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|+++.+.|. ......+ +. ..|+
T Consensus 152 ~l~~~l~~---~~~~v~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (389)
T 1gd9_A 152 ELKKYVTD---KTRALIINS-PCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 226 (389)
T ss_dssp HHHHHCCT---TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred HHHHhcCc---CceEEEEEC-CCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEE
Confidence 88888752 567777776 788899765 788999999999999999999999998876664 3333332 21 2354
Q ss_pred --eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccHHHHHHHHHH
Q psy8199 487 --LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMK 559 (965)
Q Consensus 487 --vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~~~~~~~~~~ 559 (965)
.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.... +...++++++.+
T Consensus 227 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (389)
T 1gd9_A 227 TVNGFSKTFAMTG-WRLGFVAAPSWIIERMVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRK 299 (389)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhhcCCcc-cceEEEEECHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 37899997 45 799999999999888765 34556788899999999999875332 334566677777
Q ss_pred HHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccC
Q psy8199 560 KITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILN 630 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t 630 (965)
++.+.|+++ ++..+.+. |.++++.+. ..+ .....+.+.|. ++||++.++ .+++||+++ .+
T Consensus 300 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~ 368 (389)
T 1gd9_A 300 LVWKRLNEM----GLPTVKPKGAFYIFPRIR-DTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TA 368 (389)
T ss_dssp HHHHHHHHT----TCCCCCCCBTTEECCBCG-GGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SC
T ss_pred HHHHHHHHc----CCeecCCCeeeEEEEecc-CCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CC
Confidence 787777765 23333344 445555543 100 11346778887 899999874 368999976 38
Q ss_pred HHHHHHHHHhhhccc
Q psy8199 631 KNEIQHMTSAIFQTF 645 (965)
Q Consensus 631 ~~~i~~~~~~l~~~~ 645 (965)
+++++++++++.+.+
T Consensus 369 ~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 369 YEKLEEAMDRMERVL 383 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887544
No 93
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.93 E-value=7.1e-25 Score=252.85 Aligned_cols=342 Identities=11% Similarity=0.063 Sum_probs=239.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ 321 (965)
..+.|.+|+.++||.+|.. +++ .+|++.+|+.+++... ..+....+..+....+++.+.+..+ ...+++++++
T Consensus 36 ~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~ 112 (437)
T 3g0t_A 36 TNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTV 112 (437)
T ss_dssp HHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred HHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeC
Confidence 4567888999999998864 455 6899999999998752 2232222334556666666665433 2457999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCce--EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKK--KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~--~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (965)
||++|++.+++.+..+ .+++ +|++.+++||++.......+. .+..+|.... +.
T Consensus 113 g~t~al~~~~~~l~~~------~~gd~~~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~-~~----- 167 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRT------HKNREYGTLFIDPGFNLNKLQCRILGQ-------------KFESFDLFEY-RG----- 167 (437)
T ss_dssp HHHHHHHHHHHHHTTS------CTTCSCCEEEEESCCHHHHHHHHHHTC-------------CCEEEEGGGG-CT-----
T ss_pred CHHHHHHHHHHHHhcC------CCCCccEEEEeCCCcHhHHHHHHHcCC-------------EEEEEeecCC-CC-----
Confidence 9999999999987410 1456 899999999997544433222 2334443210 00
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc---
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--- 475 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--- 475 (965)
..|+++|+++++. .++.+| +++| +|++|.+. +.+.+++|.++|++||+++|+||+|+++...+...
T Consensus 168 -----~~d~~~l~~~l~~--~~~~~v~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 237 (437)
T 3g0t_A 168 -----EKLREKLESYLQT--GQFCSIIYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPG 237 (437)
T ss_dssp -----THHHHHHHHHHTT--TCCCEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTT
T ss_pred -----ccCHHHHHHHHhc--CCceEEEEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccc
Confidence 1488999999842 234444 5566 88999766 67779999999999999999999999875443211
Q ss_pred ------cccc-cCCCcceeeeccccC-CCcccceeeeecHHHHH-h-----------------hhccCCcccccccCCCC
Q psy8199 476 ------ACEH-AEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN-S-----------------IYYKNNINIFLHSHSYS 529 (965)
Q Consensus 476 ------~~~~-~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~-~-----------------~~~~~~~~~~~~~~t~~ 529 (965)
.+.. .+....+.++||.++ .| +++|++++++++++ . +.. .....+++
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 310 (437)
T 3g0t_A 238 EPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS------ALYALSSG 310 (437)
T ss_dssp SSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT------HHHHHHSS
T ss_pred ccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHH------HHhhhcCC
Confidence 1111 222222447899987 56 79999999999988 6 433 23445778
Q ss_pred CCHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHcccCCCceeee-------e-ceeEEEEEEEeecCccch
Q psy8199 530 GNPLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINF-------R-QKGMIWAFDVIIEDPEQI 596 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-------~-g~G~~~~i~~~~~~~~~~ 596 (965)
.++++++++.++|+... -+...++++++.+++.+.|+++ ++..+ + ..|.++.+.+. .
T Consensus 311 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~--~---- 380 (437)
T 3g0t_A 311 ATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK--G---- 380 (437)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET--T----
T ss_pred CCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC--C----
Confidence 89999999999998764 2456777888888888888765 44444 4 56777777663 1
Q ss_pred hhHHHHHHHHHHHcCcEEeecC-------CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 597 ETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 597 ~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.....+.+.|.++||.+.++. +++|++++.. ++++++++++++.+.
T Consensus 381 -~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 381 -MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQML 433 (437)
T ss_dssp -CCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHH
Confidence 114467888999999998854 6799998844 999999999888654
No 94
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.93 E-value=1.6e-24 Score=248.98 Aligned_cols=340 Identities=14% Similarity=0.083 Sum_probs=227.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHH------------hhccccccCCCCcHHHHHHHHHHHhhcC----CCCCeEE
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQL------------NKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YKLGHCF 318 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~~v~ 318 (965)
.++|+.++. +++| +|.+.+++.++. ....+|....+..+....+++.+.+.++ .+.++++
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 678887663 4666 468888887543 2222333232345556666666665443 3568999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+++||++|++.++++++. ++++|++.+++||++........|. .+..+|........
T Consensus 113 ~~~G~~~ai~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~--- 169 (428)
T 1iay_A 113 MAGGATGANETIIFCLAD--------PGDAFLVPSPYYPAFNRDLRWRTGV------------QLIPIHCESSNNFK--- 169 (428)
T ss_dssp EEEHHHHHHHHHHHHHCC--------TTCEEEEESSCCTTHHHHTTTTTCC------------EEEEECCCTTTTTC---
T ss_pred EccChHHHHHHHHHHhCC--------CCCeEEEccCCCcchHHHHHHhcCC------------EEEEeecCCccCCc---
Confidence 999999999999998742 4578999999999975433222221 22334432110000
Q ss_pred ChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc
Q psy8199 399 SANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF 475 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~ 475 (965)
.|+++|++++++. ..++++|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|+++++.|..+
T Consensus 170 -------~d~~~l~~~l~~~~~~~~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 170 -------ITSKAVKEAYENAQKSNIKVKGLILTN-PSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp -------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC
T ss_pred -------CCHHHHHHHHHHHHhcCCceEEEEEcC-CCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCc
Confidence 2678888888642 33566666655 588899765 88999999999999999999999999876655322
Q ss_pred -ccccc-------CCCcc----eeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy8199 476 -ACEHA-------EIWPD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541 (965)
Q Consensus 476 -~~~~~-------~~~pD----ivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~ 541 (965)
....+ ++.+| +.+|||+++ .| +|+|++++ ++++++.+.. ...+++.++++++++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~ 311 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARK--------MSSFGLVSTQTQYFLAAM 311 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHH--------HHTTSCCCHHHHHHHHHH
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHH--------HHhcccCCHHHHHHHHHH
Confidence 21111 23367 457999997 55 89999998 6888887764 123467899999999888
Q ss_pred HHHHh-----cccHHHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCc-cchhhHHHHHHHHHHHc-CcE
Q psy8199 542 LEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDP-EQIETFSKKFFVAALKN-ELL 613 (965)
Q Consensus 542 L~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~-~~~~~~~~~~~~~l~~~-Gi~ 613 (965)
|+... -++..++++++.+++.+.|+++ ++..+++ .|+|+++.+. ... .........+.+.|.++ ||+
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~gi~ 386 (428)
T 1iay_A 312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV----GIKCLKNNAGLFCWMDLR-PLLRESTFDSEMSLWRVIINDVKLN 386 (428)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCBCCCSSSSEEEEECG-GGCSSSSHHHHHHHHHHHHHTSCEE
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEech-hhcCCCchhHHHHHHHHHHHhCCEE
Confidence 86421 1345667777788888888765 3333445 5777777774 110 00011234678888876 999
Q ss_pred Eeec-------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 614 LRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 614 ~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.++ .+++|++++ ..++++++++++++.+.+
T Consensus 387 v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 387 VSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp CEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred EeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 9874 258999987 589999999999887643
No 95
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.93 E-value=1.6e-24 Score=246.50 Aligned_cols=333 Identities=12% Similarity=0.102 Sum_probs=233.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChh
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGA 324 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGs 324 (965)
.|+.+|||.+|. +....+|++.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+++++++||+
T Consensus 33 ~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIGN---PSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSCC---CCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecCC---CCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 457899998873 33337899999999998763 2233233445677788888877665 3567999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|++.+++.+.. +++++|++.+++||++.......+. .+..+|.......
T Consensus 110 ~al~~~~~~l~~-------~g~d~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~---------- 159 (398)
T 3ele_A 110 ASLSICFRALTS-------DAYDEFITIAPYFPEYKVFVNAAGA-------------RLVEVPADTEHFQ---------- 159 (398)
T ss_dssp HHHHHHHHHHCC-------STTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECCCTTTSS----------
T ss_pred HHHHHHHHHHcC-------CCCCEEEEeCCCchhhHHHHHHcCC-------------EEEEEecCCcCCc----------
Confidence 999999998743 2338999999999997544333221 2344444321111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh------cCCeEEEeccccCCCccccccc--
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN------YNIHLIADEIAVGCGRTGKFFA-- 476 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tg~gr~G~~~~-- 476 (965)
.|+++|++++. +++.+|++.. ++|++|.+. +.+.+++|.++|++ ||+++|+||+|++|.+.|....
T Consensus 160 -~d~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 233 (398)
T 3ele_A 160 -IDFDALEERIN---AHTRGVIINS-PNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV 233 (398)
T ss_dssp -CCHHHHHHTCC---TTEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG
T ss_pred -CCHHHHHHHhC---cCCCEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCCh
Confidence 26788888774 3567777766 689999876 66779999999999 9999999999999877664322
Q ss_pred ccccCCCcceeeeccccC-CCcccceeeeecHHHHH------hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc
Q psy8199 477 CEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN------SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549 (965)
Q Consensus 477 ~~~~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~------~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~ 549 (965)
....+....+.++||.++ .| +++|++++++++++ .+.. .....++++.++++++++.+.|+ +..
T Consensus 234 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~l~---~~~ 304 (398)
T 3ele_A 234 TKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCG-----AGRALGYVCAPSLFQKMIVKCQG---ATG 304 (398)
T ss_dssp GGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHH-----HHHHTTCCCSCHHHHHHHTTCTT---CCC
T ss_pred HhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHH-----HhhhccccCCCHHHHHHHHHHhc---CHH
Confidence 233333344457999997 56 89999999887443 2221 01123467778888888777664 344
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYL 623 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~ 623 (965)
..++++++.+++.+.|+++ ++..+.+.|.+ +++.+. .. ....+.+.|.++||++.|+ .+++|+
T Consensus 305 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi 373 (398)
T 3ele_A 305 DINAYKENRDLLYEGLTRI----GYHCFKPDGAFYMFVKAL--ED-----DSNAFCEKAKEEDVLIVAADGFGCPGWVRI 373 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHH----TCCEECCSBSSEEEEECS--SS-----CHHHHHHHHHTTTEECEESGGGTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHc----CCeecCCCeeEEEEEEcC--CC-----CHHHHHHHHHHCCEEEeCccccCCCCeEEE
Confidence 6788899999999999876 33444445444 666553 11 1446778889999999875 379999
Q ss_pred eCCcccCHHHHHHHHHhhhccc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++. .++++++++++++.+++
T Consensus 374 s~~--~~~e~i~~~l~~l~~~l 393 (398)
T 3ele_A 374 SYC--VDREMIKHSMPAFEKIY 393 (398)
T ss_dssp ECC--SCHHHHHHHHHHHHHHH
T ss_pred Eec--CCHHHHHHHHHHHHHHH
Confidence 964 79999999999887654
No 96
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.93 E-value=1.3e-24 Score=248.09 Aligned_cols=340 Identities=15% Similarity=0.070 Sum_probs=234.0
Q ss_pred cCCcccccccccchhc-cCCCCCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 251 FSGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
.+|+.++|+.++.... .++ .+|++.+++.++++... .+....+..+....+++.+.+..+ .+.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688999998886532 566 57999999999887642 232222345666777777766543 345799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+. .++++|++.+++||++...+...+. .+..+|........ .
T Consensus 114 l~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~ 162 (406)
T 1xi9_A 114 LQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGG-------------KPVEYRTIEEEDWQ----------P 162 (406)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEEEEGGGTSE----------E
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeecCCCcCCc----------C
Confidence 999999773 2568899999999997544332221 22233321100000 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc--
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP-- 484 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p-- 484 (965)
|+++|+++++ .++++|++++ ++|++|.+. +++++++|.++|++||+++|+||+|++|++.+.......++ ..
T Consensus 163 d~~~l~~~l~---~~~~~v~i~~-p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~ 236 (406)
T 1xi9_A 163 DIDDIRKKIT---DRTKAIAVIN-PNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVP 236 (406)
T ss_dssp CHHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSC
T ss_pred CHHHHHHhhC---cCceEEEEEC-CCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCce
Confidence 6788888885 3567777777 789999765 77889999999999999999999999886633333343343 22
Q ss_pred cee--eeccccC-CCcccceeee--ecH----HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHH
Q psy8199 485 DFL--CLSKGIT-GGYLPLSLVM--TTD----KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQR 553 (965)
Q Consensus 485 Div--t~sK~l~-gG~~pig~v~--~~~----~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~ 553 (965)
|++ ++||.++ .| +++|+++ +++ ++++.+.. ..... ++.++++++++.++|+...+ +.+.++
T Consensus 237 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~------~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 308 (406)
T 1xi9_A 237 VIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDR------LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKK 308 (406)
T ss_dssp EEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHH------HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred EEEEeccccccCCCc-cEEEEEEEecCchhHHHHHHHHHH------HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344 5799997 45 7999999 888 88887764 11222 67889999999999963221 335566
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEe
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLM 624 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~ 624 (965)
++++.+++.+.|+++ |++..+.+.|. +..+.+. ... .....++.+.|. ++||++.++ .+++||+
T Consensus 309 ~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis 381 (406)
T 1xi9_A 309 LKERRDYIYKRLNEI---PGISTTKPQGAFYIFPKIE-VGP---WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV 381 (406)
T ss_dssp HHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEEC-SCS---CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE
T ss_pred HHHHHHHHHHHHHhC---CCCeeecCCeeEEEEEecC-ccC---CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEE
Confidence 777777777777654 55655555544 4444553 100 011346777776 899999874 4689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++ .++++++++++++.+.+
T Consensus 382 ~~--~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 382 FL--PPIEILEEAMDRFEKFM 400 (406)
T ss_dssp CC--SCHHHHHHHHHHHHHHH
T ss_pred ec--CCHHHHHHHHHHHHHHH
Confidence 76 89999999999887654
No 97
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.3e-24 Score=248.35 Aligned_cols=336 Identities=10% Similarity=0.019 Sum_probs=232.0
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEVA 330 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~A 330 (965)
.++||.++.. .+| .+|.+.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+ ++++++||++|++.+
T Consensus 26 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 4889888753 566 6899999999998762 2333233345666777777776655 3456 899999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC--CCCCCCCChhHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEIARCAI 408 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~ 408 (965)
++.+.. ++++|++.+++||++.......+. .+..+|.... .+. .|+
T Consensus 103 ~~~~~~--------~gd~Vl~~~~~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-----------~d~ 150 (411)
T 2o0r_A 103 VLGLVE--------PGSEVLLIEPFYDSYSPVVAMAGA-------------HRVTVPLVPDGRGFA-----------LDA 150 (411)
T ss_dssp HHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEEETTEEE-----------CCH
T ss_pred HHHhcC--------CCCEEEEeCCCcHhHHHHHHHcCC-------------EEEEeeccccccCCC-----------CCH
Confidence 987732 468899999999997543322211 2233333210 000 267
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccc----cCCC
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH----AEIW 483 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~----~~~~ 483 (965)
++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|+++++.|.. ..... .+..
T Consensus 151 ~~l~~~l~---~~~~~v~l~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (411)
T 2o0r_A 151 DALRRAVT---PRTRALIINS-PHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERT 225 (411)
T ss_dssp HHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred HHHHHhhc---cCceEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCE
Confidence 88888874 3577777777 789999765 7889999999999999999999999988766642 22222 2223
Q ss_pred cceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKK 560 (965)
Q Consensus 484 pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~ 560 (965)
..+.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+...+ +...++++++.++
T Consensus 226 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (411)
T 2o0r_A 226 ITISSAAKMFNCTG-WKIGWACGPAELIAGVRA------AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDR 298 (411)
T ss_dssp EEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHH------HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcc-ceEEEEeeCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33457899987 56 799999999999887765 23345677888999999999975321 3456677777888
Q ss_pred HHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec------------------CCE
Q psy8199 561 ITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI------------------GNT 620 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~------------------~~~ 620 (965)
+.+.|+++ ++..+.+. |.++++.+. ... ......+.+.|. ++||++.++ .++
T Consensus 299 l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~ 370 (411)
T 2o0r_A 299 LAAGLTEI----GFAVHDSYGTYFLCADPR-PLG---YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHL 370 (411)
T ss_dssp HHHHHHHH----TCEECCCCBSSEEEEECG-GGT---CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGC
T ss_pred HHHHHHHc----CCEecCCCeeEEEEEecC-CCC---CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCe
Confidence 88888765 33333333 557777764 100 001345667766 689998763 257
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+||+++ .++++++++++++.+.+.+
T Consensus 371 iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 371 VRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp EEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 999965 5899999999998876543
No 98
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.92 E-value=7.8e-24 Score=241.17 Aligned_cols=331 Identities=14% Similarity=0.123 Sum_probs=229.6
Q ss_pred CCcccccccccchhccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
||++|+|+.++ .++|+ .+|++.+|+.++++..... .......+...+++++++++++. .+.+++ +||++|
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~-~sG~~a 118 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVF-SSAYNA 118 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEE-SCHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEE-CCcHHH
Confidence 78999999875 33444 2789999999998774221 11123457789999999999963 344555 778889
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..+++++... .+++.|++.++.|++... .....+ ..+..+|. +
T Consensus 119 ~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~-~~~~~g------------~~~~~v~~-----------------~ 162 (401)
T 2bwn_A 119 NDATLSTLRVL------FPGLIIYSDSLNHASMIE-GIKRNA------------GPKRIFRH-----------------N 162 (401)
T ss_dssp HHHHHHHHHHH------STTCEEEEETTCCHHHHH-HHHHSC------------CCEEEECT-----------------T
T ss_pred HHHHHHHHhcC------CCCCEEEECchhhHHHHH-HHHHcC------------CeEEEEcC-----------------C
Confidence 99998865332 245678887776655432 221111 13344443 2
Q ss_pred HHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc--CCCcccccccccccCC-
Q psy8199 407 AIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV--GCGRTGKFFACEHAEI- 482 (965)
Q Consensus 407 d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--g~gr~G~~~~~~~~~~- 482 (965)
|+++|++++++.. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ .||+.|..+. ...++
T Consensus 163 d~~~le~~l~~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~ 236 (401)
T 2bwn_A 163 DVAHLRELIAADDPAAPKLIAFES-VYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLM 236 (401)
T ss_dssp CHHHHHHHHHHSCTTSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCG
T ss_pred CHHHHHHHHHhhccCCceEEEEec-CcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCcc
Confidence 5678888887543 4678899999 8999999887 8999999999999999999998 3566665443 44444
Q ss_pred -Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHH
Q psy8199 483 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQ 556 (965)
Q Consensus 483 -~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~ 556 (965)
.+|++ +|||++++. -|++++++++++.+... ...+. .+.+.++++++++.++|+.+.+ ++..+++++
T Consensus 237 ~~~~i~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~--~~~~~--~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 309 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSY--APGFI--FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQM 309 (401)
T ss_dssp GGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHH--CHHHH--TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccCC---CCEEecCHHHHHHHHHh--CcCce--ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 24544 899999741 27788888888876531 11111 2223477899999999998865 357888899
Q ss_pred HHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------C-CEEEEeCCc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G-NTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~-~~lR~~p~~ 627 (965)
+.+++.+.|+++ . +..+.+.|.++.+.+. + ......+.+.|. ++||.+.|. + +++|++++.
T Consensus 310 ~~~~l~~~L~~~-g---~~~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~ 379 (401)
T 2bwn_A 310 HAKVLKMRLKAL-G---MPIIDHGSHIVPVVIG--D----PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSP 379 (401)
T ss_dssp HHHHHHHHHHHH-T---CCBCCCSSSCEEEECC--C----HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCT
T ss_pred HHHHHHHHHHHC-C---CcccCCCCCeEEEEeC--C----hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeC
Confidence 999999999876 2 2222344557777663 1 112446778885 789999763 2 489999999
Q ss_pred ccCHHHHHHHHHhhhcccc
Q psy8199 628 ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++++++++++++.+.+.
T Consensus 380 ~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 380 VHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp TSCHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8999999999999876543
No 99
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.92 E-value=1.6e-24 Score=243.00 Aligned_cols=324 Identities=13% Similarity=0.081 Sum_probs=224.8
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.+|+.+|||.++.. +++ .+|+|.+|+.++++..+.. ..+++.....++.++++++++.+.+++++++||++|++.+
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~-~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~ 98 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAA-LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNL 98 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGG-GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccch-hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence 57889999988743 455 6899999999998773111 1223333346888888888876678999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+.. ++++|++.+++|+++.......+. .+..+|..... ++++
T Consensus 99 ~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~--------------~~~~ 143 (360)
T 3hdo_A 99 IRAFAA--------EGEEIGYVHPSYSYYGTLAEVQGA-------------RVRTFGLTGDF--------------RIAG 143 (360)
T ss_dssp HHHHCC--------TTCEEEEESSSCTHHHHHHHHHTC-------------EEEEECBCTTS--------------SBTT
T ss_pred HHHHhC--------CCCEEEEcCCChHHHHHHHHHCCC-------------EEEEeeCCCCC--------------CHHH
Confidence 997732 468899999999987544333222 23344432111 1112
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s 490 (965)
+ .+....+ +|+++. ++|++|.+.+ +++++++|+++|+++|+||+|++|+..+.....+..+....+.++|
T Consensus 144 l---~~~~~~~--~v~i~~-p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~s 213 (360)
T 3hdo_A 144 F---PERYEGK--VFFLTT-PNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLS 213 (360)
T ss_dssp C---CSSBCSS--EEEEES-SCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEEST
T ss_pred H---HhhcCCC--EEEEeC-CCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecch
Confidence 2 1111222 444444 5899999887 7789999999999999999999874332222222333334455799
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
|.++.+++++|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.|+++
T Consensus 214 K~~g~~G~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 284 (360)
T 3hdo_A 214 KSYSLAGMRIGLAIARPEVIAALDK--------IRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI- 284 (360)
T ss_dssp TTTSCTTSCCEEEECCHHHHHHHHH--------HSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HhhcCCccceeeEeeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 9986333899999999999988875 22457889999999999997421 1335566667777777777654
Q ss_pred CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 570 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++...++.|.++.+.+. . .....+.+.|.++||+++++. +++|++.+ ++++++++++++.+.
T Consensus 285 ---~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 285 ---GYDVIPSQGNYLFATPP--D-----RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEI 351 (360)
T ss_dssp ---TCEECCCSSSEEEEECT--T-----CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHH
T ss_pred ---CCEEcCCCccEEEEECC--C-----CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 45556778888877653 1 114467788999999998743 68999943 899999999988764
Q ss_pred c
Q psy8199 645 F 645 (965)
Q Consensus 645 ~ 645 (965)
.
T Consensus 352 ~ 352 (360)
T 3hdo_A 352 G 352 (360)
T ss_dssp H
T ss_pred h
Confidence 4
No 100
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=1.8e-24 Score=247.06 Aligned_cols=333 Identities=11% Similarity=0.092 Sum_probs=229.0
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
.+|+.++||.++.. .+| .+|++.+|+ ++++.. ..+....+..+....+++.+.+..+ .+.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 46899999988754 466 478999999 888653 1232222345666677777766443 3457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+. .++++|++.+++||++.......+. .+..+|...... +. .
T Consensus 116 ~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~---------~~-~- 163 (409)
T 2gb3_A 116 LFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGV-------------KLIPVTRRMEEG---------FA-I- 163 (409)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTC-------------EEEEEECCGGGT---------SC-C-
T ss_pred HHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-------------EEEEeccCCCCC---------Cc-c-
Confidence 99999773 2568899999999987543322221 233343321000 00 0
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccce
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDF 486 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDi 486 (965)
+++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|+++++.|.+... ..++ ..|+
T Consensus 164 ~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i 237 (409)
T 2gb3_A 164 PQNLESFIN---ERTKGIVLSN-PCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVV 237 (409)
T ss_dssp CTTGGGGCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEE
T ss_pred HHHHHHhhC---cCCeEEEECC-CCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEE
Confidence 355666553 3577777777 789999865 6789999999999999999999999988766643332 2233 3466
Q ss_pred e--eeccccC-CCcccceeeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHH
Q psy8199 487 L--CLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKK 560 (965)
Q Consensus 487 v--t~sK~l~-gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~ 560 (965)
+ ++||.++ .| +++|++++++ ++++.+.. .....+ +.++++++++.++|+... -+.+.++++++.++
T Consensus 238 ~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~------~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (409)
T 2gb3_A 238 VIDSVSKKFSACG-ARVGCLITRNEELISHAMK------LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVET 309 (409)
T ss_dssp EEEESTTTTTCGG-GCCEEEECSCHHHHHHHHH------HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred EEecchhccCCcc-ceEEEEEECcHHHHHHHHH------HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 5 6899997 45 7999999998 88887764 223344 789999999999885321 13356667777888
Q ss_pred HHHHHHcccCCCceee-eece-eEEEEEEEeecCccchhhHHHHHHHHHHHc------CcEEeec----------CCEEE
Q psy8199 561 ITKALTSLITHPKIIN-FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKN------ELLLRPI----------GNTVY 622 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~-v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~------Gi~~~~~----------~~~lR 622 (965)
+.+.|+++ ++.. +.+. |.+..+.+. . .....+.+.|.++ ||++.|+ .+++|
T Consensus 310 l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iR 378 (409)
T 2gb3_A 310 VLKKLEEH----GLKRFTKPSGAFYITAELP--V-----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIR 378 (409)
T ss_dssp HHHHHHHT----TCCCBCCCSBSSEEEEECS--S-----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEE
T ss_pred HHHHHHHc----CceeeeCCCeeEEEEEEeC--C-----CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEE
Confidence 88888765 2322 2333 555555552 1 1134677888877 9999874 36899
Q ss_pred EeCCcccCHHHHHHHHHhhhcccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++++ .++++++++++++.+.+.
T Consensus 379 is~~--~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 379 IACV--LEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHH
T ss_pred EEeC--CCHHHHHHHHHHHHHHHH
Confidence 9977 899999999998876543
No 101
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.92 E-value=2.1e-24 Score=241.52 Aligned_cols=315 Identities=12% Similarity=0.107 Sum_probs=219.4
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
.+.++|+.+|. +++|+. |.+ + +... ..|+.....++.+.++++++.+.++|++++||++|++.+++
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a----~~~~-----~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--T----QQTL-----NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--C----CCCT-----TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCceEEeeCCC--CCCCCC-HhH--h----hhhh-----ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHH
Confidence 35789998884 688974 555 2 2222 22333335678888888887667899999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.+.. +++++|++.+++||++...+...+. .+..+|..... . .|+++|+
T Consensus 94 ~~~~-------~g~d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~-~-----------~d~~~l~ 141 (356)
T 1fg7_A 94 AFCE-------PGKDAILYCPPTYGMYSVSAETIGV-------------ECRTVPTLDNW-Q-----------LDLQGIS 141 (356)
T ss_dssp HHCC-------TTTCEEEECSSSCTHHHHHHHHHTC-------------EEEECCCCTTS-C-----------CCHHHHH
T ss_pred HHhC-------CCCCEEEEeCCChHHHHHHHHHcCC-------------EEEEeeCCCCC-C-----------CCHHHHH
Confidence 7742 2338899999999998654433222 22333332111 1 2567777
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccCCCcceeeecc
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPDFLCLSK 491 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~pDivt~sK 491 (965)
+++. ++.+|+++. ++|++|.+. +.+++++|.++|+ +|+++|+||+|++|++....... +.++....+.+|||
T Consensus 142 ~~i~----~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 214 (356)
T 1fg7_A 142 DKLD----GVKVVYVCS-PNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSK 214 (356)
T ss_dssp TSCT----TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSS
T ss_pred HHhc----CCCEEEEeC-CCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchH
Confidence 6663 456666666 689999775 6888999999999 99999999999988632222222 22222233458999
Q ss_pred ccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHc
Q psy8199 492 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 492 ~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~~~~~~~~~~~~~~l~~~L~~ 567 (965)
.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+... -+...++++++++++.+.|++
T Consensus 215 ~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 285 (356)
T 1fg7_A 215 AFALAG-LRCGFTLANEEVINLLMK--------VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE 285 (356)
T ss_dssp TTCCGG-GCCEEEEECHHHHHHHHH--------HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCch-hhhEEEEeCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 987 55 899999999999988865 23456789999999999986432 233456666777777777765
Q ss_pred ccCCCce-eeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-c-----CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 568 LITHPKI-INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-I-----GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 568 l~~~~~i-~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-~-----~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+ +++ ...++.|+++.+.+. + ...+.+.|.++||++++ + .+++|++++ +++++++++++
T Consensus 286 ~---~~~~~~~~~~~~~~~~~~~--~-------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~ 350 (356)
T 1fg7_A 286 I---PCVEQVFDSETNYILARFK--A-------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDA 350 (356)
T ss_dssp S---TTEEEECCCSSSEEEEEET--T-------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHH
T ss_pred C---CCceEECCCCCeEEEEECC--C-------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHH
Confidence 4 333 345667888877663 1 34677888999999998 3 258999965 68899999988
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.+.
T Consensus 351 l~~~ 354 (356)
T 1fg7_A 351 LRAE 354 (356)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8653
No 102
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.92 E-value=8.5e-24 Score=239.82 Aligned_cols=337 Identities=14% Similarity=0.120 Sum_probs=235.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC---CCCc--HHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS---NLTH--KPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~---~~~~--~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
++..|+|.. ..|+.+|++.+|+.+++....+.+.. .++. +...++.+.++++++.+.+++++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 355667653 26788999999999998764321111 2222 567889999999997666799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (965)
++.+++.++. .++++|++.+++||++......... .....+..+|.+. ....
T Consensus 89 ~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~~~~~----------- 141 (390)
T 1elu_A 89 CDIVLWGLDW-------HQGDEILLTDCEHPGIIAIVQAIAA---------RFGITYRFFPVAATLNQG----------- 141 (390)
T ss_dssp HHHHHHHSCC-------CTTCEEEEETTCCHHHHHHHHHHHH---------HHCCEEEEECCGGGSSSS-----------
T ss_pred HHHHHhCCCC-------CCCCEEEEecCcccHHHHHHHHHHH---------HhCcEEEEEcCCCCCCcc-----------
Confidence 9999987731 2568999999999997432111000 0011233444321 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH----hcCCeEEEeccccCCCcccccccccccC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN----NYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|+ +||+++|+||+|+ +|... .....
T Consensus 142 ~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~~~ 208 (390)
T 1elu_A 142 DAAAVLANHLG---PKTRLVILSH-LLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDFSR 208 (390)
T ss_dssp CHHHHHHTTCC---TTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCTTT
T ss_pred chHHHHHHhcC---CCceEEEEec-cccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CChhh
Confidence 37888887774 4678888888 8999999887 999999999 9999999999996 65432 12223
Q ss_pred CCcceee--eccccCCCcccceeeeecHHHHHhhhccC-Ccc---------cc------cccCCCCCCHHHHHHHHHHHH
Q psy8199 482 IWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKN-NIN---------IF------LHSHSYSGNPLACCAALATLE 543 (965)
Q Consensus 482 ~~pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~---------~~------~~~~t~~~~~~~~aaa~a~L~ 543 (965)
..+|+++ ++|.+.|| +++|++++++++++.+.... ... ++ ....+.+.++++++++.++|+
T Consensus 209 ~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 287 (390)
T 1elu_A 209 LEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ 287 (390)
T ss_dssp SCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH
Confidence 4578886 89977776 68999999998887765310 000 00 011223457888888888888
Q ss_pred HHhccc----HHHHHHHHHHHHHHHHHcccCCCceeee---eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee
Q psy8199 544 IFNKDN----ILQRISQDMKKITKALTSLITHPKIINF---RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 616 (965)
Q Consensus 544 ~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~~i~~v---~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 616 (965)
.+.+.+ ..++++++.+++.+.|+++ +++..+ ++.|.|+.+.+. ++. ....+.+.|.++||.+.+
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~ 358 (390)
T 1elu_A 288 LHQRQGTAEERYQAICQRSEFLWRGLNQL---PHVHCLATSAPQAGLVSFTVD--SPL----GHRAIVQKLEEQRIYLRT 358 (390)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHS---TTEEESCSSCCSSSEEEEEEC--SSS----CHHHHHHHHHHTTEECEE
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHhc---CCcEEecCccccccEEEEEcC--CCC----CHHHHHHHHHHCCEEEEe
Confidence 775533 5667777788888877664 455444 567888888773 111 134677888899999998
Q ss_pred cC--CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 617 IG--NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 617 ~~--~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+. +++|++++...++++++++++++.+.
T Consensus 359 ~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 359 IADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 74 79999999999999999999988754
No 103
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.92 E-value=1.8e-23 Score=239.84 Aligned_cols=347 Identities=11% Similarity=0.106 Sum_probs=233.0
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhcc---ccccCCCCcHHHHHHHHHHHhhcCCC--C-CeEEEcCChhHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---HVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGASA 326 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~~--~-~~v~~~~sGseA 326 (965)
+..+|||..|.. .++ .+|++.+|+.+++.... .|....+..+....+++.+.+.++.. . +++++++||++|
T Consensus 27 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 457899988753 343 68999999999987632 33323344567778888887766533 3 589999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC---CCCCCCCChhHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSANEI 403 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 403 (965)
++.+++.+. .++++|++.+++||++.......+. .+..+|.... .+.. .....+
T Consensus 104 ~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~G~~--~~~~~~ 160 (422)
T 3fvs_A 104 LFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGG-------------RPVFVSLKPGPIQNGEL--GSSSNW 160 (422)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECBCCCCCSSSC--CBGGGS
T ss_pred HHHHHHHHc--------CCCCEEEEcCCCchhhHHHHHHcCC-------------EEEEEeccccccccccc--ccccCC
Confidence 999999773 2568899999999997544333322 2223332210 0000 000000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccC-
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAE- 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~- 481 (965)
..|+++|++++. +++++|++++ ++|++|.+. +++.+++|.++|++||+++|+||+|++|++.|. ......+.
T Consensus 161 -~~d~~~l~~~~~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 234 (422)
T 3fvs_A 161 -QLDPMELAGKFT---SRTKALVLNT-PNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG 234 (422)
T ss_dssp -BCCHHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred -CCCHHHHHhhcC---CCceEEEECC-CCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc
Confidence 026788887764 3577777777 799999876 788899999999999999999999999877775 22222222
Q ss_pred ---CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----hc----c
Q psy8199 482 ---IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----NK----D 548 (965)
Q Consensus 482 ---~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-----~~----~ 548 (965)
....+.++||.++ .| +++|++++++++++.+.. ..+..+++.++++++++.++|+.. .. +
T Consensus 235 ~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 307 (422)
T 3fvs_A 235 MWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFV 307 (422)
T ss_dssp TGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHH
T ss_pred ccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHH------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHH
Confidence 2233447899997 45 899999999999888765 345678889999999999999751 11 2
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCc--------cchhhHHHHHHHHH-HHcCcEEeec-
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDP--------EQIETFSKKFFVAA-LKNELLLRPI- 617 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~--------~~~~~~~~~~~~~l-~~~Gi~~~~~- 617 (965)
...++++++.+++.+.|+++ ++..+ +..|.++.+.+. ... ........++...+ .++||++.|+
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~ 382 (422)
T 3fvs_A 308 QFPQAMQRCRDHMIRSLQSV----GLKPIIPQGSYFLITDIS-DFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVS 382 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TCEEEBCSBSSEEEEECH-HHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHc----CCeecCCCeeeEEEEech-hhcccccccccccccccHHHHHHHHHHhcCEEEeCcH
Confidence 34556666677777777654 44433 445666666653 100 00000133555654 4679998872
Q ss_pred -----------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 -----------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -----------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+ +..++++++++++++.+.+
T Consensus 383 ~f~~~~~~~~~~~~iRis--~~~~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 383 IFYSVPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWK 419 (422)
T ss_dssp GGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCcCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 3689999 5569999999999887643
No 104
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.92 E-value=9.5e-25 Score=248.13 Aligned_cols=343 Identities=10% Similarity=-0.015 Sum_probs=225.1
Q ss_pred ecCCcccccccccchhccCC--CCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE--cCCh
Q psy8199 250 TFSGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY--GSDG 323 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lG--h~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~--~~sG 323 (965)
+..|..++|+.+|.+..+.| +.+|++.+|+.++++.. ..|....+..+.+..+++.+... +...++|+| ++||
T Consensus 22 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~v~~~~~~g~ 100 (394)
T 2ay1_A 22 ADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSETTATLATVGG 100 (394)
T ss_dssp HCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGGGEEEEEEEHH
T ss_pred hCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcccEEEEecCCc
Confidence 34577899999987655566 56899999999887652 11221222334444444444322 114678999 9999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANE 402 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 402 (965)
++|++.++++++.+ .++++|++.+++||++.......+. .+..+|... ....
T Consensus 101 ~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-------- 153 (394)
T 2ay1_A 101 TGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGL-------------PVQTYRYFDAETRG-------- 153 (394)
T ss_dssp HHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTC-------------CEEEEECEETTTTE--------
T ss_pred hhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCC-------------ceEEEecccccCCc--------
Confidence 99999999988654 2567899999999998554433322 233333310 0011
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cccccccc
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFACEHA 480 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~~~ 480 (965)
.|+++|++++++.+...+++++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.| .......+
T Consensus 154 ---~d~~~l~~~l~~~~~~~~~~~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 228 (394)
T 2ay1_A 154 ---VDFEGMKADLAAAKKGDMVLLHGC-CHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLI 228 (394)
T ss_dssp ---ECHHHHHHHHHTCCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHH
Confidence 267889998875433456677666 789999754 78899999999999999999999999987654 22222222
Q ss_pred -CCCccee---eeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHHH------
Q psy8199 481 -EIWPDFL---CLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEIF------ 545 (965)
Q Consensus 481 -~~~pDiv---t~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~~------ 545 (965)
...+|++ ++||+++ .| +|+|++++ ++++++.+... ... .+..++. .++++++++.++|+..
T Consensus 229 ~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~--~~~-~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~ 304 (394)
T 2ay1_A 229 ASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGA--MAF-LNRQTYSFPPFHGAKIVSTVLTTPELRADW 304 (394)
T ss_dssp HHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHH--HHH-HHHTTTSSCCCHHHHHHHHHHHSHHHHHHH
T ss_pred hhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHH--HHH-HHhhhcCCCChHHHHHHHHHhcChHHHHHH
Confidence 2234543 7899998 56 89999998 67655443220 000 1223444 4899999999988743
Q ss_pred --hcccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEE
Q psy8199 546 --NKDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVY 622 (965)
Q Consensus 546 --~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR 622 (965)
.-+...++++++.+++.+.|+++.....+..+.+. |+++.+.+. ...+.+.+.++||++.++ +|
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gi~v~~~---~R 371 (394)
T 2ay1_A 305 MAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------PEQVKRIKEEFGIYMVGD---SR 371 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT---CE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----------HHHHHHHHHhCCEEecCC---Ce
Confidence 12345667777788888888765210023333344 555544332 124566777899999874 69
Q ss_pred EeCCcccCHHHHHHHHHhhhc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~ 643 (965)
|+++ .+++++++++++++.+
T Consensus 372 is~~-~~~~~~i~~~~~~l~~ 391 (394)
T 2ay1_A 372 INIA-GLNDNTIPILARAIIE 391 (394)
T ss_dssp EEGG-GCCTTTHHHHHHHHHH
T ss_pred EEee-cCCHhhHHHHHHHHHH
Confidence 9977 4789999999988765
No 105
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.92 E-value=1.8e-24 Score=248.81 Aligned_cols=344 Identities=8% Similarity=0.029 Sum_probs=229.4
Q ss_pred cccccccccchhccCCCCCHHH--HHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhc-CCCCCe---EEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYI--NKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLT-QYKLGH---CFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v--~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~-~~~~~~---v~~~~sGse 325 (965)
+.++||.+|.+. .+|+ +|.+ .+++.++++. ...|....+..+....+++.+.+.. +.+.++ +++++||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 578999888653 6775 6666 7777776644 1222222223344444554443332 445677 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccc-ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA-VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|++.+++.+.. ++++|++.+++||++...... .+. .+..+|.....+.
T Consensus 125 al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---------- 173 (430)
T 2x5f_A 125 GLSLVGDLFVN--------QDDTILLPEHNWGNYKLVFNTRNGA-------------NLQTYPIFDKDGH---------- 173 (430)
T ss_dssp HHHHHHHHHCC--------TTCEEEEESSCCTHHHHHHTTTTCC-------------EEEEECCBCTTSC----------
T ss_pred HHHHHHHHHhC--------CCCEEEEcCCcCccHHHHHHHhcCC-------------eEEEEeccCccCC----------
Confidence 99999997742 458899999999998544333 221 2233343211011
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh-----cCCeEEEeccccCCCccccc-ccc-
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-----YNIHLIADEIAVGCGRTGKF-FAC- 477 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tg~gr~G~~-~~~- 477 (965)
.|+++|++++++.+.++.+|++.. ++|++|.+ ++.+++++|.++|++ ||+++|+||+|++|.+.|.. ...
T Consensus 174 -~d~~~l~~~l~~~~~~~~~v~i~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 250 (430)
T 2x5f_A 174 -YTTDSLVEALQSYNKDKVIMILNY-PNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLF 250 (430)
T ss_dssp -BCSHHHHHHHHHCCSSEEEEEECS-SCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHH
T ss_pred -cCHHHHHHHHHhcCCCCEEEEEcC-CCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHH
Confidence 257888888876443555544444 48899975 478899999999999 99999999999998766642 122
Q ss_pred -cccCCCcc------eeeeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-H-
Q psy8199 478 -EHAEIWPD------FLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-I- 544 (965)
Q Consensus 478 -~~~~~~pD------ivt~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~-~- 544 (965)
...+..++ +.+|||.++ .| +++|++++ ++++++.+... .....++.+++.|+++++++.++|+ .
T Consensus 251 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 327 (430)
T 2x5f_A 251 TALTNLHSNAILPIRLDGATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAK--VKGLIRSNISSGPLPTQSAVKHVLKNNK 327 (430)
T ss_dssp HHHHTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHH--HHHHHHTTTSSCCHHHHHHHHHHHHSCH
T ss_pred HHHhhccCCcceEEEEEecccCCCCCC-CCeEEEEEecCCHHHHHHHHHH--HhhhhhcccCCCChHHHHHHHHHHccCh
Confidence 22233455 337899997 45 89999999 99998887641 0111223678899999999999997 3
Q ss_pred --Hhc-ccHHHHHHHHHHHHHHHHHccc-CCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-
Q psy8199 545 --FNK-DNILQRISQDMKKITKALTSLI-THPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI- 617 (965)
Q Consensus 545 --~~~-~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~- 617 (965)
.+. +...++++++.+++.+.|++.. .. ++..+.+.| +++++.+. .. ....+.+.|.+ +||++.|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g~ 399 (430)
T 2x5f_A 328 QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIALN 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecCC
Confidence 221 2255666677777777776321 22 455555554 45666663 11 13467788887 99999986
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++. .++++++++++++.+.+
T Consensus 400 ~~~iRis~~~-~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 400 ATDIRIAFSC-VEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp SSEEEEEGGG-SCGGGHHHHHHHHHHHH
T ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 4799999875 58889999999887654
No 106
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.92 E-value=1.1e-24 Score=247.64 Aligned_cols=345 Identities=9% Similarity=-0.049 Sum_probs=215.5
Q ss_pred eEEEecCCcccccccccchhccCC--CCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY 319 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG--h~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~ 319 (965)
..+.+..|+.++||.+|.+..+.| +.+|++.+|+.++++... .+....+..+.+..+++.+..... .+.++|++
T Consensus 18 ~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 18 DLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp ----------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred HHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 334455678899999998766666 567999999998876531 121122233344444444432210 12578998
Q ss_pred --cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCC
Q psy8199 320 --GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINK 396 (965)
Q Consensus 320 --~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 396 (965)
++||++|++.+++++..+ .++++|++.+++||++.......+. .+..+|... ....
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-- 156 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHT-- 156 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTE--
T ss_pred EecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCC-------------ceEEEecccCCCCC--
Confidence 999999999999987654 3568899999999998655444332 223333310 0011
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cc
Q psy8199 397 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KF 474 (965)
Q Consensus 397 ~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~ 474 (965)
.|+++|++++.+.+.+.+++++.. ++|++|.+ .+.+++++|.++|++||+++|+||+|++|++.| .+
T Consensus 157 ---------~d~~~l~~~l~~~~~~~~~v~~~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 225 (396)
T 2q7w_A 157 ---------LDFDALINSLNEAQAGDVVLFHGC-CHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDA 225 (396)
T ss_dssp ---------ECHHHHHHHHTTCCTTCEEEEECS-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHT
T ss_pred ---------cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchh
Confidence 267899998875433455565555 58889875 478889999999999999999999999987654 33
Q ss_pred ccccccCCCc-c---eeeeccccC-CCcccceeeee---cHH----HHHhhhccCCcccccccCCCC-CCHHHHHHHHHH
Q psy8199 475 FACEHAEIWP-D---FLCLSKGIT-GGYLPLSLVMT---TDK----IYNSIYYKNNINIFLHSHSYS-GNPLACCAALAT 541 (965)
Q Consensus 475 ~~~~~~~~~p-D---ivt~sK~l~-gG~~pig~v~~---~~~----i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~ 541 (965)
.....+...+ + +.+|||+++ .| +|+|++++ +++ +++.+.. .+..++. .|+++++++.++
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~ 297 (396)
T 2q7w_A 226 EGLRAFAAMHKELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKA-------AIRANYSNPPAHGASVVATI 297 (396)
T ss_dssp HHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHH-------HHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHH-------HHhhccCCCCcHHHHHHHHH
Confidence 3333232222 3 337899998 56 89999986 553 4444432 1223443 499999999988
Q ss_pred HHHH------h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 542 LEIF------N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 542 L~~~------~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
|+.. . -+...++++++.+++.+.|+++..-..+....+. |+++.+.+. ...+.+.+.++||
T Consensus 298 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv 367 (396)
T 2q7w_A 298 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------KEQVLRLREEFGV 367 (396)
T ss_dssp HTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------HHHHHHHHHHHCE
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----------HHHHHHHHHhcCe
Confidence 8532 0 1234566677777888877765100023333444 444333321 1245566778999
Q ss_pred EEeecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 613 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 613 ~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++.++ +|++++. .++++++++++++.++
T Consensus 368 ~v~~~---~Ris~~~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 368 YAVAS---GRVNVAG-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp ECCTT---CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred eecCC---ceEEEee-cCHHHHHHHHHHHHhc
Confidence 99874 6999774 3889999999887653
No 107
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.91 E-value=2.6e-24 Score=246.07 Aligned_cols=343 Identities=9% Similarity=-0.019 Sum_probs=224.1
Q ss_pred CCcccccccccchhccCCCC--CHHHHHHHHHHHhhccccccCCC-CcHHHHHHHHHHHhhcC-C-----CCCeEEE--c
Q psy8199 252 SGKRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ-Y-----KLGHCFY--G 320 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-----~~~~v~~--~ 320 (965)
+|+.++||.+|.+..+.||. +|.+.+|+.+++...... ..| +.....++.+.++++++ . ..++|++ +
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t 105 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN--HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS 105 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEEC
Confidence 57889999998764555554 589999999887321111 111 22233455555555542 1 4579999 9
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCc-----eEEEEEcCCccCCccccccccCCcCccchhcccCCC-eeEecCCC-CCC
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNK-----KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTPD-SRN 393 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~-----~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 393 (965)
+||++|++.+++++..+ .++ ++|++.+++||++...+...+. . +..+|... ...
T Consensus 106 ~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~ 166 (412)
T 1ajs_A 106 LGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTAGF-------------KDIRSYRYWDTEKR 166 (412)
T ss_dssp EHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHTTC-------------SCEEEEECEETTTT
T ss_pred CCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCC-------------ceeEEEeeecCCCC
Confidence 99999999998866544 244 7899999999998654443332 2 23333310 011
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-
Q psy8199 394 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG- 472 (965)
Q Consensus 394 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G- 472 (965)
. .|+++|++++.+...++.+|++.. ++|++|.+ ++.+++++|.++|++||+++|+||+|++|++.|
T Consensus 167 ~-----------~d~~~l~~~l~~~~~~~~~v~~~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~ 233 (412)
T 1ajs_A 167 G-----------LDLQGFLSDLENAPEFSIFVLHAC-AHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNL 233 (412)
T ss_dssp E-----------ECHHHHHHHHHHSCTTCEEEEESS-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCH
T ss_pred c-----------cCHHHHHHHHHhCCCCcEEEEECC-CCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcc
Confidence 1 267889888876444556665444 58888875 588999999999999999999999999998876
Q ss_pred --ccccccccCCCcc----eeeeccccCC-Ccccceeeee---cHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHH
Q psy8199 473 --KFFACEHAEIWPD----FLCLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALAT 541 (965)
Q Consensus 473 --~~~~~~~~~~~pD----ivt~sK~l~g-G~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~ 541 (965)
.++....+...+| +.+|||+++. | +|+|++++ ++++++.+... .. ..+..+++ .|+++++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~a~~~~ 309 (412)
T 1ajs_A 234 EKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLSQ--MQ-KIVRVTWSNPPAQGARIVART 309 (412)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHH--HH-HHHHTTTSSCCSHHHHHHHHH
T ss_pred cccchHHHHHhccCCcEEEEEecccccCCCC-cceEEEEEecCCHHHHHHHHHH--HH-HHHhcccCCCChHHHHHHHHH
Confidence 3334433322344 3478999987 6 89999999 88744433210 00 01335565 599999999999
Q ss_pred HHHHh--------cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 542 LEIFN--------KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 542 L~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
|+... -+...++++++++++.+.|+++..-..+..+.+.|.++.+.-. + ...+...+.++||+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gv~ 380 (412)
T 1ajs_A 310 LSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--N-------PKQVEYLINQKHIY 380 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--C-------HHHHHHHHHTTCEE
T ss_pred HcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--C-------HHHHHHHHHhCCEE
Confidence 97541 1346777788888888888765200023333444444333211 1 22344566789999
Q ss_pred EeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 614 LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 614 ~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.|+ +|++++. .++++++++++++.+.+
T Consensus 381 v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 381 LLPS---GRINMCG-LTTKNLDYVATSIHEAV 408 (412)
T ss_dssp CCTT---SEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ecCC---cEEEeee-CCHHHHHHHHHHHHHHH
Confidence 9874 5998653 48899999999887654
No 108
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.91 E-value=3.3e-24 Score=241.95 Aligned_cols=296 Identities=13% Similarity=0.106 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHhhc-CCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~-~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+...++.+.+++++ +.+.+++++++||++|++.+++.+. .++++|++.+++|++........+.
T Consensus 63 ~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~------- 127 (375)
T 3op7_A 63 EGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYPTYQQLYDIPKSLGA------- 127 (375)
T ss_dssp TCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESSCTHHHHHHHHTTC-------
T ss_pred CChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCC-------
Confidence 33567888888876 3466899999999999999999773 2568899999999987443332221
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.+..+|.+...+.. .|+++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++|
T Consensus 128 ------~~~~v~~~~~~~~~----------~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~-~~~~l~~i~~la~~~ 186 (375)
T 3op7_A 128 ------EVDLWQIEEENGWL----------PDLEKLRQLIR---PTTKMICINN-ANNPTGAVM-DRTYLEELVEIASEV 186 (375)
T ss_dssp ------EEEEEEEEGGGTTE----------ECHHHHHHHCC---TTCCEEEEES-SCTTTCCCC-CHHHHHHHHHHHHTT
T ss_pred ------EEEEEeccccCCCC----------CCHHHHHHhhc---cCCeEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHc
Confidence 22333322100000 16788988885 3567788888 799999765 788899999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
|+++|+||+|+++++.+.....+.++..+++.+|||+++ .| +++|++++++++++.+.. ..+..+++.++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~------~~~~~~~~~~~~~ 259 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPG-IRIGWVAANHQVTDILRD------YRDYTMICAGVFD 259 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGG-GCCEEEECCHHHHHHHTT------TGGGTTSCCCHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhhccCCCcHH
Confidence 999999999999876533333455566677889999997 55 899999999999998865 3456778889999
Q ss_pred HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHH-HHc
Q psy8199 535 CCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAA-LKN 610 (965)
Q Consensus 535 ~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l-~~~ 610 (965)
++++.++|+..++ +...++++++.+++.+.|++ .+++..+.+.|. +..+.+. .+. ....+.+.+ .++
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~ll~~~ 330 (375)
T 3op7_A 260 DLVAQLALAHYQEILERNRHILEENLAILDQWIEE---EPLVSYIRPAVVSTSFVKIA--VDM----PMEDFCLQLLQEH 330 (375)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---CTTEEECCCSSSSCEEEEEC--CSS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh---CCCceEecCCCeEEEeEEcC--CCC----CHHHHHHHHHHhC
Confidence 9999999875321 22334445555666665554 466665555543 4444443 211 133566666 588
Q ss_pred CcEEeecC-----CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 611 ELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 611 Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
||++.|+. +++|++ +..+.++++++++++.+.+.
T Consensus 331 gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 331 GVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLR 369 (375)
T ss_dssp CEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHG
T ss_pred CEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 99998753 799999 55667889999998876544
No 109
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.91 E-value=8.2e-24 Score=237.73 Aligned_cols=322 Identities=16% Similarity=0.132 Sum_probs=226.8
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
++.+||+.++. ++++ .+|++++|+.++++....+ +.....++.++++++++.+.+++++++||++|++.+++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY-----PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC-----CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC-----CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 37899998874 4566 7899999999998754322 22222578888888887667899999999999999998
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.... ++++|++.+++|+++.......+ ..+..+|.+.. .+ .|+++|+
T Consensus 101 ~l~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~----------~~--~d~~~l~ 147 (365)
T 3get_A 101 SKLN--------SKNAFLQAGVTFAMYEIYAKQCG-------------AKCYKTQSITH----------NL--DEFKKLY 147 (365)
T ss_dssp HHCC--------TTCEEEECSSCCTHHHHHHHHHT-------------CEEEECSSSSC----------CH--HHHHHHH
T ss_pred HHhC--------CCCEEEEeCCChHHHHHHHHHcC-------------CEEEEEecCCC----------CC--CCHHHHH
Confidence 7732 56889999999988743332222 12334443110 12 5889999
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc--cc-cc-ccccc---cCCCcc
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TG-KF-FACEH---AEIWPD 485 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G-~~-~~~~~---~~~~pD 485 (965)
++++ +++.+|+++. ++|++|.+. +.+.+++|.++| ++|+++|+||+|++|.. .| .. ..... .+....
T Consensus 148 ~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (365)
T 3get_A 148 ETHK---DEIKLIFLCL-PNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLY 221 (365)
T ss_dssp HHTT---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEE
T ss_pred HHhC---CCCCEEEEcC-CCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEE
Confidence 8885 4567777765 689999877 566677777777 67999999999997652 22 21 11222 222233
Q ss_pred eeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITK 563 (965)
Q Consensus 486 ivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~ 563 (965)
+.++||.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+
T Consensus 222 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (365)
T 3get_A 222 LGTFSKLYGLGG-LRIGYGIANANIISAFYK--------LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKE 292 (365)
T ss_dssp EEESSSTTSCTT-TCCEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecchHhcCcc-hheEEEEcCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 347899987 45 899999999999988865 22456789999999999986321 12345566666777777
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcccCHHHHHHHHH
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
.|+++ ++...++.|.++.+.+. +. ....+.+.|.++||.+.++ .+++|++++ ++++++++++
T Consensus 293 ~l~~~----g~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~ 358 (365)
T 3get_A 293 FAKKH----NIKIIDSYTNFITYFFD--EK-----NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFT 358 (365)
T ss_dssp HHHHT----TCEECCCSSSEEEEECS--SS-----CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHH
T ss_pred HHHhC----CCEECCCCCeEEEEECC--CC-----CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHH
Confidence 77654 45556778888777764 11 2456788899999999886 379999954 8899999998
Q ss_pred hhhcc
Q psy8199 640 AIFQT 644 (965)
Q Consensus 640 ~l~~~ 644 (965)
++.+.
T Consensus 359 ~l~~~ 363 (365)
T 3get_A 359 EFDKI 363 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 110
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.91 E-value=4.9e-24 Score=246.68 Aligned_cols=343 Identities=10% Similarity=0.033 Sum_probs=227.0
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CcHHHHHHHHHHHhhc----CCCCCeEEEcCC
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSLT----QYKLGHCFYGSD 322 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~----~~~~~~v~~~~s 322 (965)
.+.+|+.+||+.+|. ..++ .+|+|.+|+.+++++.... ....| ......+|.+.+++++ +...++++|++|
T Consensus 64 ~~~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G 140 (449)
T 3qgu_A 64 EKNPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDG 140 (449)
T ss_dssp HHCTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESC
T ss_pred hhCCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccC
Confidence 334689999999884 3343 6899999999998864211 11122 2233466777777765 556679999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+++|+..+ .... .++++|++.+++||++.......+....+.. .....+..+|........
T Consensus 141 ~~~al~~~-~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~------- 201 (449)
T 3qgu_A 141 SKCDIARI-QMMF--------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFF------- 201 (449)
T ss_dssp HHHHHHHH-HHHH--------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTC-------
T ss_pred HHHHHHHH-HHHh--------CCCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCc-------
Confidence 99999988 4332 3678899999999998655544443210000 001124444443211100
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA- 480 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~- 480 (965)
.|+ .+. .++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|. ......+
T Consensus 202 ---~~~-------~~~-~~~~~v~l~~-p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~ 268 (449)
T 3qgu_A 202 ---PDL-------SKA-KRTDIIFFCS-PNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIP 268 (449)
T ss_dssp ---CCG-------GGC-CCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred ---CCh-------hHc-CCCCEEEEeC-CCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhcc
Confidence 011 111 2445566555 689999765 778899999999999999999999999877653 2222222
Q ss_pred ---CCCcceeeeccccC-CCcccceeeeecHHHHHh--------hhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--
Q psy8199 481 ---EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNS--------IYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-- 546 (965)
Q Consensus 481 ---~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-- 546 (965)
+....+.+|||+++ .| +|+|++++++++++. +.. .....+++.++++++++.++|+...
T Consensus 269 ~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 341 (449)
T 3qgu_A 269 GADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNR------VMTTCFNGASNIVQAGGLACLQPEGLK 341 (449)
T ss_dssp TGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHH------HHHHSCCCCCHHHHHHHHHHTSHHHHH
T ss_pred CCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHH------HhhcccCCCCHHHHHHHHHHHhhcCHH
Confidence 22344568999997 56 899999999887752 322 2234555789999999999986421
Q ss_pred -cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec------
Q psy8199 547 -KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI------ 617 (965)
Q Consensus 547 -~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------ 617 (965)
-++..++++++.+++.+.|+++ ++....+. |.++.+.+. . ....++.+.|+++ ||++.|+
T Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~~gI~v~pg~~f~~~ 410 (449)
T 3qgu_A 342 EMNAMIKFYKENAQILKTTFTEM----GFSVYGGDDAPYIWVGFP--G-----KPSWDVFAEILERCNIVTTPGSGYGPA 410 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TCCEEESSSSSEEEEECT--T-----SCHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CCeeeCCCCeeEEEEECC--C-----CCHHHHHHHHHHHCCEEEecchHhCCC
Confidence 2346777788888888888765 34444444 666666653 1 0134566777765 9999874
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++||+ +..++++++++++++.+++.
T Consensus 411 ~~~~iRis--~~~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 411 GEGFVRAS--AFGSRENILEAVRRFKEAYG 438 (449)
T ss_dssp GTTEEEEE--CCSCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 3799999 67799999999999876543
No 111
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.91 E-value=4.1e-23 Score=235.97 Aligned_cols=348 Identities=12% Similarity=0.069 Sum_probs=229.2
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CC-CeEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KL-GHCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~-~~v~~~~sGseA~ 327 (965)
+..+||+..|.. .++ .+|+|.+|+.+++... ..+....+..+....+++.+.+.++. .. +++++++||++|+
T Consensus 22 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 456788877742 343 5899999999998753 22322233456667777777765542 34 7899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+. .++++|++..++||++.......+. .+..+|...............+ ..|
T Consensus 99 ~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~g~~~~~~~~-~~d 156 (410)
T 3e2y_A 99 FNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGA-------------VPVFIPLRSKPTDGMKWTSSDW-TFD 156 (410)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEECCCCSSCCBGGGE-ECC
T ss_pred HHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCC-------------EEEEEeccccccccccccccCC-cCC
Confidence 99999773 2568899999999988544333222 1222222100000000000000 026
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccC----C
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE----I 482 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~----~ 482 (965)
+++|++++. .++++|++++ ++|++|.+. +++.+++|.++|++||+++|+||+|++|++.|.. .....+. .
T Consensus 157 ~~~l~~~~~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 231 (410)
T 3e2y_A 157 PRELESKFS---SKTKAIILNT-PHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWER 231 (410)
T ss_dssp HHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred HHHHHhhcC---CCceEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCe
Confidence 788887764 4677888887 799999876 7778999999999999999999999999877752 2333332 1
Q ss_pred CcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----hc----ccHHH
Q psy8199 483 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----NK----DNILQ 552 (965)
Q Consensus 483 ~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-----~~----~~~~~ 552 (965)
..++.+|||.++ .| +++|++++++++++.+.. ..+.++++.++++++++.++|+.. .. +...+
T Consensus 232 ~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (410)
T 3e2y_A 232 TITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQT------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPK 304 (410)
T ss_dssp EEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred EEEEecchhhcCCCC-ceEEEEEECHHHHHHHHH------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 233447899997 56 899999999999988765 345678889999999999999741 11 23455
Q ss_pred HHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCcc-c----hhhHHHHHHHHH-HHcCcEEeec--------
Q psy8199 553 RISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPE-Q----IETFSKKFFVAA-LKNELLLRPI-------- 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~-~----~~~~~~~~~~~l-~~~Gi~~~~~-------- 617 (965)
+++++.+++.+.|+++ ++.. .+..|.++++++...... + .......+...+ .++||++.|+
T Consensus 305 ~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~ 380 (410)
T 3e2y_A 305 ELEVKRDRMVRLLNSV----GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380 (410)
T ss_dssp HHHHHHHHHHHHHHTT----TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT
T ss_pred HHHHHHHHHHHHHHHC----CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC
Confidence 5666666777777654 3443 344566666666410000 0 001122455544 5789999763
Q ss_pred ----CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 ----GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 ----~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+++||+ +..++++++++++++.+
T Consensus 381 ~~~~~~~iRis--~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFC--FIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence 2689999 66799999999998864
No 112
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.91 E-value=3.1e-23 Score=236.53 Aligned_cols=327 Identities=10% Similarity=0.007 Sum_probs=223.6
Q ss_pred CCCCHHHHHHHHHHHhhccc-cccCC-----CCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHHHHHHHHHHhc
Q psy8199 269 GHSNSYINKALKNQLNKLEH-VMLSN-----LTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 269 Gh~~p~v~~av~~~~~~~~~-~~~~~-----~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al~~a~~~~~~~ 341 (965)
|+.+|++.+|+.++++.... .+... ...+...++.+.++++++. +.++++|++||++|++.+++.+++++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~--- 109 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN--- 109 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH---
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc---
Confidence 46899999999999876421 11000 1355678899999999975 46899999999999999999885321
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
..++++|++.+++||+.......+.. .....+..+|.+... . .|+++|++++. ++
T Consensus 110 -~~~gd~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~-~-----------~d~~~l~~~l~---~~ 164 (406)
T 1kmj_A 110 -VRAGDNIIISQMEHHANIVPWQMLCA---------RVGAELRVIPLNPDG-T-----------LQLETLPTLFD---EK 164 (406)
T ss_dssp -CCTTCEEEEETTCCGGGTHHHHHHHH---------HHTCEEEEECBCTTS-C-----------BCGGGHHHHCC---TT
T ss_pred -CCCCCEEEEecccchHHHHHHHHHHH---------hCCCEEEEEecCCCC-C-----------cCHHHHHHHhc---cC
Confidence 03568899999999987422111100 001123344433211 1 25678888774 46
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCccc
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP 499 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~p 499 (965)
+++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... +..+|++ +++|.++. .+
T Consensus 165 ~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g~--~G 232 (406)
T 1kmj_A 165 TRLLAITH-VSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSGHKLYGP--TG 232 (406)
T ss_dssp EEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEGGGTTSC--TT
T ss_pred CeEEEEeC-CCccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCC--CCccc--ccCCCEEEEEchhccCC--CC
Confidence 78899999 8999999887 9999999999999999999997 4433 11222 2357887 58998843 24
Q ss_pred ceeeeecHHHHHhhhccCCccc---------------ccccCCCCCCHHHHHHHH-HHHHHHhcc---cHHHHHHHHHHH
Q psy8199 500 LSLVMTTDKIYNSIYYKNNINI---------------FLHSHSYSGNPLACCAAL-ATLEIFNKD---NILQRISQDMKK 560 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~~~---------------~~~~~t~~~~~~~~aaa~-a~L~~~~~~---~~~~~~~~~~~~ 560 (965)
+|++++++++++.+........ .....+.+.+++++++++ ++++.+.+. .+.++++++.++
T Consensus 233 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 1kmj_A 233 IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHY 312 (406)
T ss_dssp CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8999999999887754110000 000122344666666665 788877542 466777788888
Q ss_pred HHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------------CCEEEEeC
Q psy8199 561 ITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------GNTVYLMP 625 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------~~~lR~~p 625 (965)
+.+.|+++ +++..+.+ .|.++.+.+. +. ....+.+.|.++||.+.++ .+++|+++
T Consensus 313 l~~~L~~~---~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~ 382 (406)
T 1kmj_A 313 ALSQLESV---PDLTLYGPQNRLGVIAFNLG--KH-----HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASL 382 (406)
T ss_dssp HHHHHTTS---TTEEEESCTTCCSEEEEEET--TC-----CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEEC
T ss_pred HHHHHhcC---CCeEEecCCCcCCEEEEEEC--CC-----CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEe
Confidence 88888664 45554445 7888888763 10 1345778889999999864 27899999
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+++++++++++++.+.+
T Consensus 383 ~~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 383 AMYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHH
Confidence 99899999999999887643
No 113
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.91 E-value=1.6e-23 Score=239.85 Aligned_cols=341 Identities=6% Similarity=-0.013 Sum_probs=227.5
Q ss_pred Ccccccccccchh---ccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcCCCCC---eEEEcCChhH
Q psy8199 253 GKRYLDAISSWWV---NLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQYKLG---HCFYGSDGAS 325 (965)
Q Consensus 253 G~~ylD~~~~~~~---~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~sGse 325 (965)
|+.++|+..|... ..+. .+|.+.+|+.+.... ...|....+..+....+++.+.... +.+ ++++++||++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~--~~~~~~~i~~t~g~~~ 113 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF--RPEGHIRSIATAGGTG 113 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG--CCSSEEEEEEESHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc--CccccccEEECCchHH
Confidence 5678888777431 1222 467788887654432 2223333345666777777776655 345 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..+++.... ++++|++.+++|+++.......+. .+..+|.....+.
T Consensus 114 al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------- 161 (418)
T 3rq1_A 114 GIHHLIHNYTE--------PGDEVLTADWYWGAYRVICSDTGR-------------TLVTYSLFDEHNN----------- 161 (418)
T ss_dssp HHHHHHHHHSC--------TTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECSBCTTSS-----------
T ss_pred HHHHHHHHhcC--------CCCEEEECCCCchhHHHHHHHcCC-------------EEEEEeeeCCCCC-----------
Confidence 99999987632 568899999999988544333322 2334443211111
Q ss_pred HHHHHHHHHHHhC--CCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHH------hcCCeEEEeccccCCCcccc---
Q psy8199 406 CAIFDLEILLKKN--HNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICN------NYNIHLIADEIAVGCGRTGK--- 473 (965)
Q Consensus 406 ~d~~~le~~l~~~--~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tg~gr~G~--- 473 (965)
.|+++|++++.+. ....++|+++. + +|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|++.|.
T Consensus 162 ~d~~~l~~~l~~~~~~~~~~~vi~~~-p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~ 239 (418)
T 3rq1_A 162 FNHEAFQNRVNELAAKQTNVVVIFNT-PGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVR 239 (418)
T ss_dssp BCHHHHHHHHHHHHHHCSEEEEEEEC-SSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHH
T ss_pred cCHHHHHHHHHHhhccCCCEEEEEeC-CCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHH
Confidence 2678888888642 13344666665 4 89999776 6667999999999 89999999999999987764
Q ss_pred cccccccCCCcce---e--eeccccCCCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy8199 474 FFACEHAEIWPDF---L--CLSKGITGGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545 (965)
Q Consensus 474 ~~~~~~~~~~pDi---v--t~sK~l~gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~ 545 (965)
.+.....++.+|+ + +|||.++..++++|++++ ++++++.+... ......+.+.+.++++++++.++|+..
T Consensus 240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~ 317 (418)
T 3rq1_A 240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEV--NKSTSRATWSNICRPAMRTMANIVADP 317 (418)
T ss_dssp GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHH--HHHHHHHHTSSCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHH--HHHHHhhccCCCchHHHHHHHHHhCCH
Confidence 2233344566773 2 689988743389999998 89998877641 000111223457888988888887422
Q ss_pred h------c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 546 N------K--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 546 ~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
. + ..+.++++++.+++.+.|+++ ++..+.+.|.++.+... .+ ..++.+.|.++||++.|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~gi~v~~g 385 (418)
T 3rq1_A 318 AKFKEYEAERNCYYQLIRDRADIFKQEAAQV----GLPMLPYRGGFFITIPT-DS-------ANAICEELKKEHIYVIAL 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCCCCSSSEEEEEC-TT-------HHHHHHHHHHTTEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCceEEEEcCC-CC-------HHHHHHHHHhCCEEEecC
Confidence 1 1 134566777777888888765 33444555554443211 11 345777889999999998
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++||+.. .+++++++++++++.+++
T Consensus 386 ~~~iRis~~-~~~~~~i~~~~~~l~~~l 412 (418)
T 3rq1_A 386 ANGIRIAAC-GIPKCQMTGLAEKIYNAM 412 (418)
T ss_dssp SSEEEEEGG-GSCHHHHTTHHHHHHHHH
T ss_pred CCCeEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 899999943 369999999999887654
No 114
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=5.8e-23 Score=233.42 Aligned_cols=329 Identities=13% Similarity=-0.004 Sum_probs=222.4
Q ss_pred CCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhc-----CCC
Q psy8199 271 SNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK-----GFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~-----g~~ 344 (965)
.+|++.+|+.+++.... .........+...++++++++.++...+++++++||++|++.|+++++..+..+ +..
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 47899999999887632 111111235566789999999998777899999999999999999987642111 223
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++++|++.+++|+++.......+ ..+..+|...... .|+++|++++++. ++++
T Consensus 122 ~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~------------~d~~~l~~~i~~~--~~~~ 174 (397)
T 3f9t_A 122 EHPKIIVPITAHFSFEKGREMMD-------------LEYIYAPIKEDYT------------IDEKFVKDAVEDY--DVDG 174 (397)
T ss_dssp SSCEEEEETTCCTHHHHHHHHHT-------------CEEEEECBCTTSS------------BCHHHHHHHHHHS--CCCE
T ss_pred CCeEEEECCcchhHHHHHHHHcC-------------ceeEEEeeCCCCc------------CCHHHHHHHHhhc--CCeE
Confidence 47889999999988633322221 1344555432211 2688999999752 4556
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC--cccc---------cccccccCCCcceeeecccc
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG--RTGK---------FFACEHAEIWPDFLCLSKGI 493 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~---------~~~~~~~~~~pDivt~sK~l 493 (965)
|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+++. ..+. .+.+.. ++.+.+.+++|.+
T Consensus 175 v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~ 248 (397)
T 3f9t_A 175 IIGIA-GTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMG 248 (397)
T ss_dssp EEEEB-SCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTT
T ss_pred EEEEC-CCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccccc
Confidence 66666 6899998876 9999999999999999999998743 2332 223333 4444455678988
Q ss_pred CCCcccceeeeecHH-HHHhhhccCCc-----ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q psy8199 494 TGGYLPLSLVMTTDK-IYNSIYYKNNI-----NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 494 ~gG~~pig~v~~~~~-i~~~~~~~~~~-----~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 567 (965)
++| .++|+++++++ +.+.+...... ....++++...++++++++++.+....-++..++.+++.+++.+.|++
T Consensus 249 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 327 (397)
T 3f9t_A 249 HCP-IPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE 327 (397)
T ss_dssp CCC-SSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 69999888654 44443220000 000112333345667777777665433355778888899999999987
Q ss_pred ccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 568 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 568 l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+ ..+.+ ..+.+.++.+.+. + ...+.+.|.++||++.++. +++|++++..+++++++++++++.+.+
T Consensus 328 ~-g~~~~--~~~~~~~~~~~~~--~-------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 328 N-NFKPV--IEPILNIVAIEDE--D-------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp T-TCCBS--SCCSSSEEEEECT--T-------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCEEE--cCCCccEEEEEeC--C-------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 6 32222 2345666666543 1 3467888999999998865 799999999999999999999987654
No 115
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=3e-23 Score=237.31 Aligned_cols=330 Identities=11% Similarity=0.027 Sum_probs=218.5
Q ss_pred CcccccccccchhccCCC--CCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcC-CCCCeEEEcCChhHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGH--SNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCFYGSDGASAVE 328 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh--~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~v~~~~sGseA~~ 328 (965)
|+.++|+..|.....-|+ .+|.+.+|+.+.... ...|....+..+.+..+++.+....+ ...+++++++||++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 678899988855333333 467788887654322 22233334556777888888876652 22339999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.... ++++|++.+++|+++.......+. .+..+|.....+. .|+
T Consensus 116 ~~~~~~~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~ 163 (413)
T 3t18_A 116 SAIFSYLD--------EGDPLICHDYYWAPYRKICEEFGR-------------NFKTFEFFTDDFA-----------FNI 163 (413)
T ss_dssp HHHHHHCC--------SSCEEEEESSCCTHHHHHHHHHTC-------------EEEEECCBCTTSS-----------BCH
T ss_pred HHHHHhcC--------CCCEEEECCCCcccHHHHHHHhCC-------------eEEEeeccCCCCC-----------cCH
Confidence 99987632 568899999999887543333221 3344444211111 267
Q ss_pred HHHHHHHHhC--CCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHH------hcCCeEEEeccccCCCccccc---cc
Q psy8199 409 FDLEILLKKN--HNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICN------NYNIHLIADEIAVGCGRTGKF---FA 476 (965)
Q Consensus 409 ~~le~~l~~~--~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tg~gr~G~~---~~ 476 (965)
++|++++++. +...+++++++ + +|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|++.|.. +.
T Consensus 164 ~~l~~~l~~~~~~~~~~~vi~~~-p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~ 241 (413)
T 3t18_A 164 DVYKEAIDEGIRDSDRIASLINS-PGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFF 241 (413)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEEC-SSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGG
T ss_pred HHHHHHHHHHhhcCCCEEEEEeC-CCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHH
Confidence 8888888642 13344666665 4 89999876 6666999999999 999999999999999887752 22
Q ss_pred ccccCCCcce--e---eeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-
Q psy8199 477 CEHAEIWPDF--L---CLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN- 546 (965)
Q Consensus 477 ~~~~~~~pDi--v---t~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~- 546 (965)
....++.+|+ + +|||.++ .| +++|++++ ++++++.+... ......+.+.+.++++++++.++|+...
T Consensus 242 ~~~~~~~~~~~~i~~~S~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 318 (413)
T 3t18_A 242 EKFSNLPRNLFVVVAFSMSKSHTAYG-LRSGAAVGISSSKEIIEEFEAS--LAHSARCNWSNGTHAAQNILIELERAENK 318 (413)
T ss_dssp GGGTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEEESCHHHHHHHHHH--HHHHHHHHTSSCCHHHHHHHHHTTSHHHH
T ss_pred HHHhhcCCCeeEEEEEecCccCCCcC-cCcEEEEEecCCHHHHHHHHHH--HHHhhhccccCCChHHHHHHHHHhcChHH
Confidence 3333556663 3 7899988 45 89999998 89998887651 0001112234578889888888775321
Q ss_pred ------cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccchhhHHHHHHHHHHHcCcEEeecCC
Q psy8199 547 ------KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELLLRPIGN 619 (965)
Q Consensus 547 ------~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~ 619 (965)
.+.+.++++++.+++.+.|+++ ++..+.+.|.++.+ .+. + ...+.+.|.++||++.|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gv~v~~g~~ 385 (413)
T 3t18_A 319 KIYEQELVDLRNMLKSRADVFVTAAKEN----KLTMIPYFGGFFTFIPTD--K-------AFDIVKDLEKENIFTIPSAK 385 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCCSSSCEEEECS--C-------HHHHHHHHHHTTEECEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCccCCCceEEEEeCCC--C-------HHHHHHHHHhCCEEEecCCC
Confidence 1234566677777777777665 34445556654433 221 1 34577788999999999889
Q ss_pred EEEEeCCcccCHH
Q psy8199 620 TVYLMPPYILNKN 632 (965)
Q Consensus 620 ~lR~~p~~~~t~~ 632 (965)
++||+++...+++
T Consensus 386 ~iRis~~~~~~~~ 398 (413)
T 3t18_A 386 GIRVAICGVGEEK 398 (413)
T ss_dssp EEEECTTTSCGGG
T ss_pred ceEEEEeeCCHHH
Confidence 9999987444333
No 116
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.91 E-value=8e-23 Score=228.20 Aligned_cols=319 Identities=11% Similarity=0.054 Sum_probs=214.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.+++|.+|+++|||.++. ++++ .+|++.+|+.+++..... ++.....++.++++++++.+.+++++++||++
T Consensus 7 ~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~ 78 (350)
T 3fkd_A 7 DEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRH-----YPEPDAGTLRQMLAKRNSVDNNAILVTNGPTA 78 (350)
T ss_dssp ---------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHTTCCGGGEEEESHHHH
T ss_pred chHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhc-----CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHH
Confidence 468899999999998874 4566 789999999988854322 22223357888888888766789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (965)
|++.+++++ . +++|++.+++|+++.......+. .+..+|. +.....
T Consensus 79 al~~~~~~l---------~-gd~Vi~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~---------- 125 (350)
T 3fkd_A 79 AFYQIAQAF---------R-GSRSLIAIPSFAEYEDACRMYEH-------------EVCFYPSNEDIGEA---------- 125 (350)
T ss_dssp HHHHHHHHT---------T-TCEEEEEESCCHHHHHHHHHTTC-------------EEEEEETTSCGGGS----------
T ss_pred HHHHHHHHH---------C-CCEEEEeCCCcHHHHHHHHHcCC-------------eEEEEecCCccccC----------
Confidence 999999876 2 67899999999987543333221 2334443 210000
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC-
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW- 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~- 483 (965)
++ +++.+|+++. ++|++|.+.+ .+.+++|.+.|+++ ++|+||+|++|+..+.... ...+..
T Consensus 126 --~~-----------~~~~~v~i~~-p~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~-~~~~~~~ 187 (350)
T 3fkd_A 126 --DF-----------SNMDFCWLCN-PNNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP-ADIKGRK 187 (350)
T ss_dssp --CC-----------TTCSEEEEES-SCTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG-GGGTTCS
T ss_pred --cc-----------CCCCEEEEeC-CCCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcchhh-HHhhcCC
Confidence 00 2344455555 5999998875 44466666666554 9999999998877664322 222222
Q ss_pred --cceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHH
Q psy8199 484 --PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 558 (965)
Q Consensus 484 --pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~ 558 (965)
..+.+|||.++ .| +++|++++++++++.+.. ...+++.++++++++.++|+... .+.. ++..++.
T Consensus 188 ~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 257 (350)
T 3fkd_A 188 NLVMVYSFSHAYGIPG-LRIGYIVANKDFMKRVAA--------FSTPWAVNALAIEAAKFILIHPAQFTLPI-RKWQRNT 257 (350)
T ss_dssp SEEEEEESHHHHSCGG-GCCEEEECCHHHHHHHHT--------TCCTTCSCHHHHHHHHHHHHCTTTTCCCH-HHHHHHH
T ss_pred CEEEEecCchhccCcc-hheEeEEeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHhCHHHHHHHH-HHHHHHH
Confidence 23347899887 45 899999999999988875 23467789999999999997543 1223 3333677
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCcccC
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILN 630 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~~~t 630 (965)
+++.+.|+++ |++...++.|.++.+.+. .. ....+.+.|.+ +||.+.++ .+++|++.. +
T Consensus 258 ~~l~~~L~~~---~~~~~~~~~~~~~~~~~~--~~-----~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~ 324 (350)
T 3fkd_A 258 VDFITALNRL---DGVEVHPSGTTFFLLRLK--KG-----TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---R 324 (350)
T ss_dssp HHHHHHHHHS---TTEEECCCSSSEEEEEES--SS-----CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---C
T ss_pred HHHHHHHhcC---CCcEECCCCCcEEEEECC--CC-----CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---C
Confidence 7777777654 667667778888877775 21 24567888888 99999874 368999943 7
Q ss_pred HHHHHHHHHhhhcccc
Q psy8199 631 KNEIQHMTSAIFQTFN 646 (965)
Q Consensus 631 ~~~i~~~~~~l~~~~~ 646 (965)
+++++++++++.+...
T Consensus 325 ~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 325 PAQNQLFIKALETFLE 340 (350)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888887765443
No 117
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.90 E-value=4e-23 Score=236.53 Aligned_cols=348 Identities=11% Similarity=-0.001 Sum_probs=222.5
Q ss_pred Ccccccccccchhc-cCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhh------c--CCCCCeEEEcC
Q psy8199 253 GKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSL------T--QYKLGHCFYGS 321 (965)
Q Consensus 253 G~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~------~--~~~~~~v~~~~ 321 (965)
.+.++||.+|.... +-...+|++.+|+.++++... .|....+..+....+++.+.+. . +.+.++|++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~ 111 (416)
T 1bw0_A 32 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCS 111 (416)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEES
T ss_pred CCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeC
Confidence 35789998886542 123478999999999987632 1221223345555566655521 1 13567999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
||++|++.+++.+.. ++++|++.+++||++.......+. .+..+|.......
T Consensus 112 g~~~al~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~------- 163 (416)
T 1bw0_A 112 GGSHGILMAITAICD--------AGDYALVPQPGFPHYETVCKAYGI-------------GMHFYNCRPENDW------- 163 (416)
T ss_dssp HHHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTT-------
T ss_pred ChHHHHHHHHHHhCC--------CCCEEEEcCCCcHhHHHHHHHcCc-------------EEEEeecCcccCC-------
Confidence 999999999998732 468899999999998543332221 1223332110000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-----ccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-----FFA 476 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-----~~~ 476 (965)
..|+++|++++.+ ...++++++| +|++|.+. +++++++|.++|++||+++|+||+|++|.+.|. +..
T Consensus 164 ---~~d~~~l~~~l~~--~~~~v~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 235 (416)
T 1bw0_A 164 ---EADLDEIRRLKDD--KTKLLIVTNP--SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS 235 (416)
T ss_dssp ---EECHHHHHHHCCT--TEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC
T ss_pred ---CCCHHHHHHHhcc--CCeEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC
Confidence 0267888888752 2334455555 88889765 788999999999999999999999999866654 222
Q ss_pred ccccCCCcce---eeeccccCCCcccceeeeecHH--HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---c
Q psy8199 477 CEHAEIWPDF---LCLSKGITGGYLPLSLVMTTDK--IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---D 548 (965)
Q Consensus 477 ~~~~~~~pDi---vt~sK~l~gG~~pig~v~~~~~--i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~ 548 (965)
...++..+++ .++||+++.+++++|+++++++ +++.+... ... .+..+++.|+++++++.++|+...+ +
T Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 312 (416)
T 1bw0_A 236 VADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEG--LKR-VGMLVCGPCTVVQAALGEALLNTPQEHLD 312 (416)
T ss_dssp TTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHH--HHH-HHHHHTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHH--HHH-HhccccCCCcHHHHHHHHHHhcccHHHHH
Confidence 2222222233 3689987543389999998763 44433310 000 1224677899999999999974322 2
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeec-----CCEE
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-----GNTV 621 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~-----~~~l 621 (965)
...++++++.+++.+.|+++ |++..+.+. |+++.+.+. ............+.+.| .++||++.|+ .+++
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~i 388 (416)
T 1bw0_A 313 QIVAKIEESAMYLYNHIGEC---IGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFT 388 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTS---TTEEECCCCBTTEEEEEEC-GGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCcccCCCeeEEEEEeCC-HHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeE
Confidence 35566677777777777643 566655444 666666664 11000001134566777 4899999884 3689
Q ss_pred EEeCCcccCHHHHHHHHHhhhccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+++ ..++++++++++++.+.+
T Consensus 389 Ris~--~~~~e~l~~~l~~l~~~l 410 (416)
T 1bw0_A 389 RLTT--TRPVEVYREAVERIKAFC 410 (416)
T ss_dssp EEEC--CSCHHHHHHHHHHHHHHH
T ss_pred EEEe--cCCHHHHHHHHHHHHHHH
Confidence 9996 478899999998887654
No 118
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.90 E-value=9.3e-23 Score=233.73 Aligned_cols=341 Identities=10% Similarity=0.076 Sum_probs=230.3
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-c--cCCCC---cHHHHHHHHHHHhhcCC-CCCeEEEcCCh
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-M--LSNLT---HKPVIKLSEKLSSLTQY-KLGHCFYGSDG 323 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~--~~~~~---~~~~~~la~~l~~~~~~-~~~~v~~~~sG 323 (965)
.+|+.++++..+.. ++.+|++.+|+.++++..... + ...+. .+...++.+.++++++. +.+++++++||
T Consensus 24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 35677777766532 468999999999998763211 1 11121 35568899999999975 56899999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
++|++.+++.+++.+ ..++++|++.+++||+......... ......+..+|.+... .
T Consensus 100 t~a~~~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~-~--------- 156 (420)
T 1t3i_A 100 TEAINLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVA---------AKTGAVLKFVQLDEQE-S--------- 156 (420)
T ss_dssp HHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHH---------HHHCCEEEEECBCTTS-S---------
T ss_pred HHHHHHHHHHhhhcc----cCCCCEEEECcchhHHHHHHHHHHH---------HhcCcEEEEeccCCCC-C---------
Confidence 999999999874210 0356889999999999531110000 0001123444443211 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|... +....+ .
T Consensus 157 --~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~ 221 (420)
T 1t3i_A 157 --FDLEHFKTLLS---EKTKLVTVVH-ISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI--D 221 (420)
T ss_dssp --BCHHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--T
T ss_pred --cCHHHHHHhhC---CCceEEEEeC-CcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc--C
Confidence 26788888875 3678888988 8999999887 8999999999999999999997 44321 122222 3
Q ss_pred cceeeec--cccCCCcccceeeeecHHHHHhhhccCCccc--------------ccccCCCCCCHHHHHHHHH-HHHHHh
Q psy8199 484 PDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINI--------------FLHSHSYSGNPLACCAALA-TLEIFN 546 (965)
Q Consensus 484 pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~--------------~~~~~t~~~~~~~~aaa~a-~L~~~~ 546 (965)
+|++++| |.+++ .++|++++++++++.+........ .....+++.++++++++++ +|+.+.
T Consensus 222 ~di~~~s~sK~~~~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 222 CDWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp CSEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEehhhhcCC--CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 7888765 95543 358999999999887754110000 0011223456676666665 787765
Q ss_pred c---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec------eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 547 K---DNILQRISQDMKKITKALTSLITHPKIINFRQ------KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 547 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g------~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
+ +.+.++.+++.+++.+.|+++ +++..+.+ .|.++.+.+. + . ....+.+.|.++||.+.++
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~l~~~gi~v~~~ 369 (420)
T 1t3i_A 300 DLGMENIHNYEVELTHYLWQGLGQI---PQLRLYGPNPKHGDRAALASFNVA--G-L----HASDVATMVDQDGIAIRSG 369 (420)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTC---TTEEEESCCGGGSCBCSEEEEEET--T-B----CHHHHHHHHHTTTEECBCS
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeCCCccccccCCEEEEEEC--C-C----CHHHHHHHHHHCCeEEeec
Confidence 4 456777888888888888765 44443332 4788888763 1 0 1345778889999999876
Q ss_pred -------------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 -------------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -------------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++..+++++++++++++.+..
T Consensus 370 ~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 370 HHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp CTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 4689999998889999999998887543
No 119
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.90 E-value=5.1e-23 Score=232.22 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=221.5
Q ss_pred EEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 247 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
.++|.+++.+.++...++..+++|..++..+.+. ++++++++.++.. +.++|++|||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--------------------~~~~~l~~~~~~~-~~v~~~~sgt~a 63 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMN--------------------DLLSNLKTVYNAE-AAVIIPGSGTYG 63 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHHH--------------------HHHHHHHHHHTCS-EEEEEESCHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHHH--------------------HHHHHHHHHhCCC-CEEEEcCChhHH
Confidence 5789999999999877777778888877654333 4456677777644 678899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++++++.+ .++++||+++++|||.+...+.... .....+.+++.+......+.. .+...
T Consensus 64 ~~~~~~~~---------~~gd~vi~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~g~~~~~~---~~~~~ 122 (379)
T 3ke3_A 64 MEAVARQL---------TIDEDCLIIRNGWFSYRWTQILEKG---------KFAKSSTVLTAERTEDTEAPK---PFAPV 122 (379)
T ss_dssp HHHHHHHH---------CTTCEEEEEECSHHHHHHHHHHHHH---------CCSSEEEEEECEESSCCSSCC---CEECC
T ss_pred HHHHHHhC---------CCCCeEEEEeCCchhHHHHHHHHHh---------CCCCceEEEeccccccccccC---CCCCC
Confidence 99988654 3678999999999997543322110 001122333332100000000 00013
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|++++++++++. ++.+|++.. +.+++|.+. +.+++++|+++|++||+++|+||+++ | +..+..+.+++...+
T Consensus 123 d~~~l~~~i~~~--~~~~v~~~~-~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~ 194 (379)
T 3ke3_A 123 DIETAVAKIKED--KSAIVYAPH-VETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLI 194 (379)
T ss_dssp CHHHHHHHHHHH--TCSEEEEES-EETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEE
T ss_pred CHHHHHHHHhhc--CCcEEEEEe-ecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEE
Confidence 788999888642 344566665 577788665 68899999999999999999999987 4 334555566664444
Q ss_pred eeeccccCCCcccceeeeecHHHHHhhhccCCcccccc-----------------cCCCCCCHHHHHHHHHHHHHHhcc-
Q psy8199 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-----------------SHSYSGNPLACCAALATLEIFNKD- 548 (965)
Q Consensus 487 vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~-----------------~~t~~~~~~~~aaa~a~L~~~~~~- 548 (965)
.+++|+++|+ .++|++++++++++.+... ...++.+ ..+++.|+.+++++.++|+.+.++
T Consensus 195 ~s~~K~l~~~-~g~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g 272 (379)
T 3ke3_A 195 SAPQKGWSST-PCAGLVMLSAAAIKKVEST-ESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIG 272 (379)
T ss_dssp ECTTTTTCSC-CCEEEEEECHHHHHHHHTC-CCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred ecchhhcCCC-CceEEEEECHHHHHhhhcC-CCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4566999876 4789999999998877541 1111111 123467888888888999987654
Q ss_pred --cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------
Q psy8199 549 --NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------- 617 (965)
Q Consensus 549 --~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------- 617 (965)
+..++.+++.+++++.|+++ ....+..- ...+.+..+... + . ...+.+.|.++||++.++
T Consensus 273 ~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~--~----~--~~~~~~~L~~~Gi~v~~g~~~~~~~~ 343 (379)
T 3ke3_A 273 FDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTE--R----D--DMHKGSAFAEAGLQIAAGVPLKVGEP 343 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECS--C----H--HHHSSHHHHHTTCCCEECCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccC--C----c--chHHHHHHHHCCeEEeCCcccccccc
Confidence 56777888889999988876 11111110 011223333221 1 1 112256788999988764
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+|++++..+++++++++++++.+.+.
T Consensus 344 ~~~~~lRis~~~~~t~~di~~~~~~l~~~l~ 374 (379)
T 3ke3_A 344 DNFKTFRLGLFGLDKLTDIDGTVERFEKALD 374 (379)
T ss_dssp TTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999876554
No 120
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.90 E-value=7.1e-23 Score=232.56 Aligned_cols=329 Identities=13% Similarity=0.087 Sum_probs=228.2
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVA 330 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~A 330 (965)
+++.|+|..+. ++.+|++.+|+.+++.. ++. ....+...++++++++.++.+.+ ++++++||++|++.+
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 101 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence 34678886543 45789999999876643 221 11346678899999999887667 899999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccC--CccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHG--ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
++.+. .++++|++.+++||+ +....... ...+..+|.+... . .|+
T Consensus 102 ~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~-~-----------~d~ 148 (393)
T 1vjo_A 102 IANAV--------EPGDVVLIGVAGYFGNRLVDMAGRY-------------GADVRTISKPWGE-V-----------FSL 148 (393)
T ss_dssp HHHHC--------CTTCEEEEEESSHHHHHHHHHHHHT-------------TCEEEEEECCTTC-C-----------CCH
T ss_pred HHhcc--------CCCCEEEEEcCChhHHHHHHHHHHc-------------CCceEEEecCCCC-C-----------CCH
Confidence 99873 256789999999998 42211111 1123444443211 1 368
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt 488 (965)
++|++++++. ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|... .......+|+++
T Consensus 149 ~~l~~~l~~~--~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~ 216 (393)
T 1vjo_A 149 EELRTALETH--RPAILALVH-AETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAY 216 (393)
T ss_dssp HHHHHHHHHH--CCSEEEEES-EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEE
T ss_pred HHHHHHHhhC--CceEEEEec-cCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEE
Confidence 8999988742 355677787 7999999876 8899999999999999999998 76432 222344679886
Q ss_pred ec--cccCCCcccceeeeecHHHHHhhhccC-Ccccccc------------cCCC-CCCHHHHHHHHHHHHHHhc---cc
Q psy8199 489 LS--KGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLH------------SHSY-SGNPLACCAALATLEIFNK---DN 549 (965)
Q Consensus 489 ~s--K~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~------------~~t~-~~~~~~~aaa~a~L~~~~~---~~ 549 (965)
+| |+++++. ++|++++++++++.+.... ...++.+ ..++ +.|+++++++.++|+.+.+ ++
T Consensus 217 ~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~ 295 (393)
T 1vjo_A 217 SCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLAN 295 (393)
T ss_dssp CCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred EcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHH
Confidence 55 9998875 8999999999988774310 0011111 2234 6789999999999988644 35
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTV 621 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~l 621 (965)
..++++++.+++.+.|+++ ..+.+.. .+ .+.++.+.+. ++ .....+.+.|.++ ||.+.++ .+++
T Consensus 296 ~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 367 (393)
T 1vjo_A 296 CWQRHQKNVEYLWERLEDI-GLSLHVE-KEYRLPTLTTVCIP--DG----VDGKAVARRLLNEHNIEVGGGLGELAGKVW 367 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSC-GGGBCSSEEEEECC--TT----CCHHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHc-CCcccCC-ccccCCcEEEEEcC--CC----CCHHHHHHHHHhhCCEEEecCccccCCCEE
Confidence 6788888999999999875 2221111 11 2345555542 11 1134677888887 9999874 3799
Q ss_pred EEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
|+++ ++..++++++++++++.+.
T Consensus 368 Ris~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 368 RVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHH
T ss_pred EEeCCccCChHHHHHHHHHHHHHH
Confidence 9995 5677888899999988654
No 121
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.9e-22 Score=228.44 Aligned_cols=331 Identities=14% Similarity=0.070 Sum_probs=229.5
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~ 332 (965)
+.|+|..+ -++.+|++.+|+.+++.. ++. ....+...++++++++.++.. .+++++++||++|++.+++
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 46888744 245789999988776542 221 112567788999999998754 4679999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccC--CccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHG--ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
.+. .++++|++.+++||+ +...+... | ..+..++.+... . .|+++
T Consensus 90 ~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~-~-----------~d~~~ 136 (386)
T 2dr1_A 90 NGV--------SKGGKVLVTIIGAFGKRYKEVVESN-G------------RKAVVLEYEPGK-A-----------VKPED 136 (386)
T ss_dssp HHS--------CTTCEEEEEESSHHHHHHHHHHHHT-T------------CEEEEEECCTTC-C-----------CCHHH
T ss_pred Hhh--------cCCCeEEEEcCCchhHHHHHHHHHh-C------------CceEEEecCCCC-C-----------CCHHH
Confidence 763 256899999999998 32111111 1 123444443211 1 36889
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s 490 (965)
|++++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... ...+|++++|
T Consensus 137 l~~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~di~~~s 205 (386)
T 2dr1_A 137 LDDALRKN-PDVEAVTITY-NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSA-MGGA--DIKFD--KWGLDVVFSS 205 (386)
T ss_dssp HHHHHHHC-TTCCEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCSEEEEE
T ss_pred HHHHHhcC-CCCcEEEEEe-ecCCcchhCC----HHHHHHHHHHcCCeEEEEcccc-ccCc--ccccc--ccCCcEEEEe
Confidence 99988642 3567777777 7999999876 8999999999999999999997 3322 12222 2346888765
Q ss_pred --cccCCCcccceeeeecHHHHHhhhccCCc----------ccc--cccCCCCCCHHHHHHHHHHHHHHhcc----cHHH
Q psy8199 491 --KGITGGYLPLSLVMTTDKIYNSIYYKNNI----------NIF--LHSHSYSGNPLACCAALATLEIFNKD----NILQ 552 (965)
Q Consensus 491 --K~l~gG~~pig~v~~~~~i~~~~~~~~~~----------~~~--~~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~ 552 (965)
|.++++ .++|++++++++++.+...... ..+ ....+++.++++++++.++|+.+.+. ...+
T Consensus 206 ~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~ 284 (386)
T 2dr1_A 206 SQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLE 284 (386)
T ss_dssp TTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999876 3689999999988766320000 001 12345678899999999999887543 5778
Q ss_pred HHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCC
Q psy8199 553 RISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPP 626 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~ 626 (965)
+++++.+++.+.|+++ ....+.. -...+.++.+.+. ++ .....+.+.|.++||.+.++ .+++|++++
T Consensus 285 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~ 357 (386)
T 2dr1_A 285 MYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTP--PG----IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHM 357 (386)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECC--TT----CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcC--CC----CCHHHHHHHHHHCCeEEecCccccCCCEEEEECC
Confidence 8888999999998875 2221111 0014677777664 11 11446788899999999874 379999998
Q ss_pred cccCHHHHHHHHHhhhcccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~ 646 (965)
..+++++++++++++.+.+.
T Consensus 358 ~~~~~~~i~~~~~~l~~~~~ 377 (386)
T 2dr1_A 358 GYMKFEDIQEMLDNLREVIN 377 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999876653
No 122
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.89 E-value=1e-22 Score=231.75 Aligned_cols=332 Identities=11% Similarity=0.028 Sum_probs=219.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CcHHHHHHHHHHHhh--cC-CCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSL--TQ-YKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~--~~-~~~~~v~~~~sGseA 326 (965)
.|+.++|+.++.. .++ .+|.+.+|+.++++..... ...+| +.....++.+.++++ .+ ...++|++++|+++|
T Consensus 31 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 4788999988753 344 6899999999988764211 11223 233456777778777 34 456799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCC-eeEecCCCCCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++.+++++ .++++|++.+++||++.......+. . +..+|........
T Consensus 108 l~~~~~~~---------~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~---------- 155 (400)
T 3asa_A 108 LFRLLSFF---------GPNQTVAIQDPSYPAYLDIARLTGA-------------KEIIALPCLQENAFF---------- 155 (400)
T ss_dssp HHHHHHHH---------CSSCEEEEEESCCHHHHHHHHHTTC-------------SEEEEEECCGGGTTC----------
T ss_pred HHHHHHHc---------CCCCEEEECCCCcHHHHHHHHHcCC-------------cceEecccchhcCcc----------
Confidence 99876543 3568899999999997533222211 1 3334432110000
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~p 484 (965)
.| +++ . +++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|. ......++..+
T Consensus 156 ~~---l~~----~-~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 156 PE---FPE----D-THIDILCLCS-PNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp CC---CCT----T-CCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred cC---hhh----c-cCccEEEEeC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 01 111 0 2455666655 689999775 788999999999999999999999998876554 22222222123
Q ss_pred c----eeeeccccC-CCcccceeeeecHHH-------HHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHhcccHH
Q psy8199 485 D----FLCLSKGIT-GGYLPLSLVMTTDKI-------YNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFNKDNIL 551 (965)
Q Consensus 485 D----ivt~sK~l~-gG~~pig~v~~~~~i-------~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~~~~~~ 551 (965)
| +.+|||.++ .| +|+|++++++++ ++.+.. ..+..++ +.|+++++++.++|+...-++..
T Consensus 226 ~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 298 (400)
T 3asa_A 226 FCAIEINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWE------RFLSTTFNGASIPAQEAGVAGLSILPQLEAI 298 (400)
T ss_dssp GTEEEEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHH------HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHH
T ss_pred CceEEEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHH------HHhccCccCCChHHHHHHHHHhCcHHHHHHH
Confidence 4 457999997 56 899999999887 454432 1123344 57899999999999765345578
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEE-EeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEE
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFD-VIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTV 621 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~-~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~l 621 (965)
++++++.+++.+.|+++ ++..+.+ .|.++++. +. ++.. ...+.+.|. ++||++.|+ .+++
T Consensus 299 ~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT----GFEVFGGEHAPYLWVKPTQ--ANIS----DRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp HHHHHHHHHHHHHHHHT----TCEEEECSSSSEEEEECCC--TTCC----TTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred HHHHHHHHHHHHHHHHC----CCeeeCCCCceEEEEeccC--CCCC----HHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 88889999999988775 3444444 36777777 53 2111 123556665 459999874 3689
Q ss_pred EEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
|++ +..++++++++++++.+.+.+
T Consensus 369 Ris--~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 369 RFS--SLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp EEE--CCSCHHHHHHHHHHHHC----
T ss_pred EEE--eeCCHHHHHHHHHHHHHHHHh
Confidence 999 678999999999998876544
No 123
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.89 E-value=7.2e-23 Score=234.53 Aligned_cols=348 Identities=10% Similarity=0.000 Sum_probs=227.9
Q ss_pred EEecCCcccccccccchhccCCCCC--HHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCC--eEEE
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSN--SYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFY 319 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~--p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~--~v~~ 319 (965)
..+..+..+||+..|.+..+.|+.+ |.|.+|+.++++... .|....+..+.+..+++.+..... ...+ ++++
T Consensus 43 ~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 122 (420)
T 4f4e_A 43 FNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQ 122 (420)
T ss_dssp HHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred HHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEE
Confidence 3334456899999998777788776 899999999887621 233233455666677776655431 0346 8999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCC
Q psy8199 320 GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGN 398 (965)
Q Consensus 320 ~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 398 (965)
|+||++|++.+++++... .++++|++.+++|+++.......+. .+..+|.. ...+.
T Consensus 123 t~G~t~al~~~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~---- 179 (420)
T 4f4e_A 123 ALGGTGALKIGADFLRTL------NPKAKVAISDPSWENHRALFDMAGF-------------EVVAYPYYDAKTNG---- 179 (420)
T ss_dssp EEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHTTC-------------CEEEEECEETTTTE----
T ss_pred CCccHHHHHHHHHHHHHh------CCCCEEEEeCCCcHhHHHHHHHcCC-------------eEEEeeeeccccCc----
Confidence 999999999998755433 3678899999999988544433332 23444431 11111
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFA 476 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~ 476 (965)
.|+++|++.+++.+++++++++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ...
T Consensus 180 -------~d~~~l~~~l~~~~~~~~~v~i~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 250 (420)
T 4f4e_A 180 -------VNFDGMLAALNGYEPGTIVVLHAC-CHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAA 250 (420)
T ss_dssp -------ECHHHHHHHHTTCCTTCEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHH
T ss_pred -------cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHH
Confidence 268899999976555677888877 799999765 778899999999999999999999999876541 222
Q ss_pred cccc-CCCccee---eeccccCC-Ccccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH---
Q psy8199 477 CEHA-EIWPDFL---CLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--- 545 (965)
Q Consensus 477 ~~~~-~~~pDiv---t~sK~l~g-G~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--- 545 (965)
...+ +..++++ +|||.++. | +|+|++++ ++++++.+... ........+.+.++++++++.++|+..
T Consensus 251 ~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 327 (420)
T 4f4e_A 251 VRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSIITDSKDEAARVLSQ--LKRVIRTNYSNPPTHGGAIVAAVLASPELR 327 (420)
T ss_dssp HHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHH--HHHHHHTTTSSCCSHHHHHHHHHHHCHHHH
T ss_pred HHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEEEcCCHHHHHHHHHH--HHHHHhcccCCCCHHHHHHHHHHhcCHHHH
Confidence 2211 2333333 68999883 5 89999763 45655443220 001112344456778888877777531
Q ss_pred ---h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCC
Q psy8199 546 ---N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN 619 (965)
Q Consensus 546 ---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~ 619 (965)
. -+...++++++.+++.+.|+++...+++....+. |++.++.+. ...+.+.+.++||++.|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gI~v~~~~- 396 (420)
T 4f4e_A 328 ASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT----------SAQVDRLREEFGIYAVSTG- 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC----------HHHHHHHHHHHCEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC----------HHHHHHHHHhCCEEecCCC-
Confidence 1 1345677777888888888765222234433344 444433321 2345567778999999864
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
|++++ .+++++++++++++.++
T Consensus 397 --Ris~~-~~~~~~i~~~~~~l~~~ 418 (420)
T 4f4e_A 397 --RICVA-ALNTRNLDVVANAIAAV 418 (420)
T ss_dssp --EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --eEEEe-cCCHHHHHHHHHHHHHH
Confidence 88864 44778899999888654
No 124
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.89 E-value=7.8e-22 Score=223.17 Aligned_cols=337 Identities=11% Similarity=0.040 Sum_probs=225.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
+|+.++|+..|.. .++ .+|.+.+++.++++.. ..|....+..+....+++.+....+. ..+++++++||++|++
T Consensus 29 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 4667889877743 344 3789999999888652 22332334566677777777765542 4578999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 407 (965)
.+++.+. .++++|++.+++|+++.......+ ..+..+|... .... .|
T Consensus 106 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~-----------~d 153 (385)
T 1b5p_A 106 NLFQAIL--------DPGDEVIVLSPYWVSYPEMVRFAG-------------GVVVEVETLPEEGFV-----------PD 153 (385)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTC-----------CC
T ss_pred HHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCcccCCC-----------CC
Confidence 9998763 256889999999988743322211 1233444321 0111 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv 487 (965)
+++|++++. +++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...|....+..+.-..+++
T Consensus 154 ~~~l~~~l~---~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 228 (385)
T 1b5p_A 154 PERVRRAIT---PRTKALVVNS-PNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLT 228 (385)
T ss_dssp HHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEE
T ss_pred HHHHHHhcC---CCCEEEEEeC-CCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEE
Confidence 788887774 2455555543 488999766 77889999999999999999999999875444222222221111222
Q ss_pred --eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH---Hhc--ccHHHHHHHHHHH
Q psy8199 488 --CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI---FNK--DNILQRISQDMKK 560 (965)
Q Consensus 488 --t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~---~~~--~~~~~~~~~~~~~ 560 (965)
+|||.++..++++|++++++++++.+.. .....+++.+++++.++.++|+. ..+ +...++++++.++
T Consensus 229 ~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 302 (385)
T 1b5p_A 229 VNGAAKAFAMTGWRIGYACGPKEVIKAMAS------VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDL 302 (385)
T ss_dssp EEESTTTTTCGGGCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhcCCcccceEEEEeCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 6899887322899999999999887764 22345677889999999888863 221 2355667777778
Q ss_pred HHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHH
Q psy8199 561 ITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i 634 (965)
+.+.|+++ ++....+.|. ++.+.+. ..+ .....+.+.|.++||.+.|+ .+++|++. ..+++++
T Consensus 303 l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~--~~~~~~i 371 (385)
T 1b5p_A 303 LLEGLTAL----GLKAVRPSGAFYVLMDTS-PIA----PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENL 371 (385)
T ss_dssp HHHHHHHH----TCCBCCCSBTTEEEEECT-TTC----SSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHH
T ss_pred HHHHHHHC----CCeecCCCeeEEEEEecC-CCC----CCHHHHHHHHHHCCeEEecccccCCCCeEEEEe--cCCHHHH
Confidence 88888765 3333344454 4444442 111 11346778888999999874 26899994 5889999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 372 ~~~l~~l~~~l 382 (385)
T 1b5p_A 372 RKALERFARVL 382 (385)
T ss_dssp HHHHHHGGGGC
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 125
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.89 E-value=2e-22 Score=225.72 Aligned_cols=327 Identities=10% Similarity=0.006 Sum_probs=216.8
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 335 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~ 335 (965)
+++|.++ ..|+.+|++.+|+.+++... ....+..+...++++++++.++.+.+++++++||++|++.+++.++
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~---~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~ 87 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQ---HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL 87 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCC---CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhc---cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh
Confidence 5555443 35678999999999988642 2244667889999999999988677899999999999999999884
Q ss_pred HHHHhcCCCCceEEEEEcCCccCCccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 336 HYWYNKGFLNKKKFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 336 ~~~~~~g~~~~~~vi~~~~~yHg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
. ++++|++.+++||++... .... ....+..+|.+ .+. .|+++|+++
T Consensus 88 ~--------~gd~vl~~~~~~~~~~~~~~~~~------------~g~~~~~v~~~--~~~-----------~d~~~l~~~ 134 (359)
T 1svv_A 88 R--------PWEAVIATQLGHISTHETGAIEA------------TGHKVVTAPCP--DGK-----------LRVADIESA 134 (359)
T ss_dssp C--------TTEEEEEETTSHHHHSSTTHHHH------------TTCCEEEECCT--TSC-----------CCHHHHHHH
T ss_pred C--------CCCEEEEcccchHHHHHHHHHhc------------CCCeeEEEeCC--CCe-----------ecHHHHHHH
Confidence 3 567999999999987432 1111 11234455542 111 267889988
Q ss_pred HHhC----CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC--CcccccccccccC--CCcce
Q psy8199 415 LKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFACEHAE--IWPDF 486 (965)
Q Consensus 415 l~~~----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~--~~pDi 486 (965)
+++. +.++++|++++ + +++|.+. +.+++++|.++|++||+++|+||+|.+| |+.+.. ....+ ..+|+
T Consensus 135 l~~~~~~~~~~~~~v~~~~-~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~ 209 (359)
T 1svv_A 135 LHENRSEHMVIPKLVYISN-T-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDM 209 (359)
T ss_dssp HHHSCSTTSCEEEEEEEES-S-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSE
T ss_pred HHHHHhccCCCceEEEEEc-C-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCE
Confidence 8753 22478888888 6 6788766 5799999999999999999999999655 444321 11111 24788
Q ss_pred eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy8199 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 566 (965)
Q Consensus 487 vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~ 566 (965)
++++..-.||..++|++++++++++.+... ...++.++..++...++..+.|+...-++..++++++++++.+.|
T Consensus 210 ~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L- 284 (359)
T 1svv_A 210 FYIGATKAGGMFGEALIILNDALKPNARHL----IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL- 284 (359)
T ss_dssp EEEECTTTTCSSCEEEEECSGGGCTTHHHH----HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEecccCCCCCceEEEEEcccHHHHHHHH----HhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-
Confidence 776433234435668888888887766430 011334444333333333333321001246677888888888888
Q ss_pred cccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEee----cCCEEEEeCCcccCHHHHHHHHHh
Q psy8199 567 SLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRP----IGNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 567 ~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~----~~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+. +++..+.+. +.++.+.+. ..+.+.|.++ ||++.+ ..+++|+++++..+++++++++++
T Consensus 285 ~~---~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 350 (359)
T 1svv_A 285 EA---CGIRLAWPSASNQLFPILE-----------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEV 350 (359)
T ss_dssp HH---TTCCBSSCCSSSEECBEEE-----------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHH
T ss_pred cc---CCeEEccCCccceEEEEcC-----------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHH
Confidence 43 233333223 344444332 2577888888 998854 225899999999999999999999
Q ss_pred hhcccc
Q psy8199 641 IFQTFN 646 (965)
Q Consensus 641 l~~~~~ 646 (965)
+.+.+.
T Consensus 351 l~~~~~ 356 (359)
T 1svv_A 351 LKRLVA 356 (359)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 887653
No 126
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.89 E-value=2.6e-22 Score=230.90 Aligned_cols=344 Identities=11% Similarity=0.038 Sum_probs=218.5
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CcHHHHHHHHHHHhh----cCCCCCeEEEcC
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSL----TQYKLGHCFYGS 321 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~----~~~~~~~v~~~~ 321 (965)
..+.+|+.+||+.+|.. .-..+|.|.+|+.++++..... ...+| +.....+|.+.++++ .+...++++|++
T Consensus 50 ~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~ 126 (432)
T 3ei9_A 50 LLKYPDAQVISLGIGDT---TEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSD 126 (432)
T ss_dssp HHHCTTCCCEECSSCCC---CSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEES
T ss_pred hhcCCCCCeEEccCCCC---CCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECC
Confidence 34456889999988843 3457999999999998864211 11122 122234455555554 355678999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|+++|+..+..++ .+++.|++.+++||++.......+....+.. .......+..+|........
T Consensus 127 G~~~al~~l~~l~---------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 190 (432)
T 3ei9_A 127 GAKCDISRLQVMF---------GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFF------ 190 (432)
T ss_dssp CHHHHHHHHHHHH---------CTTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTS------
T ss_pred ChHHHHHHHHHHc---------CCCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCc------
Confidence 9999998743332 3578899999999998655444332111110 00011134444443111000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA- 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~- 480 (965)
.++++ . .++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|...+.......+
T Consensus 191 -------~~l~~----~-~~~~~v~l~~-p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~ 256 (432)
T 3ei9_A 191 -------PDLST----V-GRTDIIFFCS-PNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIP 256 (432)
T ss_dssp -------CCGGG----C-CCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGST
T ss_pred -------CChhh----C-CCCCEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcC
Confidence 11221 1 2344444444 589999766 7778999999999999999999999987554433232222
Q ss_pred CC---CcceeeeccccC-CCcccceeeeecHHH--------HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-h-
Q psy8199 481 EI---WPDFLCLSKGIT-GGYLPLSLVMTTDKI--------YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-N- 546 (965)
Q Consensus 481 ~~---~pDivt~sK~l~-gG~~pig~v~~~~~i--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-~- 546 (965)
+. ...+.+|||+++ .| +++|++++++++ .+.+.. .....+++.++++++++.++|+.. .
T Consensus 257 ~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (432)
T 3ei9_A 257 GAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNR------IICTCFNGASNISQAGALACLTPEGLE 329 (432)
T ss_dssp TGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHH------HHHHSCCCSCHHHHHHHHHHSSHHHHH
T ss_pred CCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHH------HhccccCCCCHHHHHHHHHHHhcccHH
Confidence 21 123447999987 55 899999999887 555543 223345568999999999888521 1
Q ss_pred -cccHHHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec------
Q psy8199 547 -KDNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI------ 617 (965)
Q Consensus 547 -~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~------ 617 (965)
-+...++++++.+++.+.|+++ ++....+ .|.++.+.+. . .....+...+++ .||++.|+
T Consensus 330 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~ll~~~gv~v~~g~~f~~~ 398 (432)
T 3ei9_A 330 AMHKVIGFYKENTNIIIDTFTSL----GYDVYGGKNAPYVWVHFP--N-----QSSWDVFAEILEKTHVVTTPGSGFGPG 398 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TCCEEECSSSSEEEEECT--T-----SCHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CceecCCCcceEEEEECC--C-----CCHHHHHHHHHHHCCEEEeCchHhCCC
Confidence 1346677788888888888765 3444443 5667666653 1 113345566654 59999873
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++|++ +..++++++++++++.+.
T Consensus 399 ~~~~iRis--~~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 399 GEGFVRVS--AFGHRENILEACRRFKQL 424 (432)
T ss_dssp GTTEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 3799999 677999999999998753
No 127
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.89 E-value=2.3e-22 Score=230.68 Aligned_cols=339 Identities=10% Similarity=0.060 Sum_probs=226.7
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHh--hc-cccc-----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLN--KL-EHVM-----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~--~~-~~~~-----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+.++..|||+.++ |+.+|++++|+.+++. .. .... ......+...++++++++.++.+.++++|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 3456788998654 4679999999999887 32 1100 0112245567899999999987677999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
||++|++.|++.+..++. .++++|++.+++|+++......+. .....+..+|..... .
T Consensus 93 ggt~a~~~a~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~-~------- 150 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQ----KKGKHIITSKTEHKAVLDTCRQLE----------REGFEVTYLAPQRNG-I------- 150 (423)
T ss_dssp SHHHHHHHHHHHHHHHHT----TTCCEEEEETTSCHHHHHHHHHHH----------HTTCEEEEECCCTTS-C-------
T ss_pred ChHHHHHHHHHHHHHhhc----cCCCEEEECCccchHHHHHHHHHH----------HcCCEEEEeccCCCC-c-------
Confidence 999999999998765431 136889999999988743322210 001123444443211 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||++++ |.. ......
T Consensus 151 ----~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~ 213 (423)
T 3lvm_A 151 ----IDLKELEAAMR---DDTILVSIMH-VNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQ 213 (423)
T ss_dssp ----CCHHHHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTT
T ss_pred ----cCHHHHHHhcC---CCcEEEEEeC-CCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhh
Confidence 26788888875 4678999998 8999999887 99999999999999999999863 322 222334
Q ss_pred CCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCc-ccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHH
Q psy8199 482 IWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNI-NIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 556 (965)
Q Consensus 482 ~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~-~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~ 556 (965)
..+|++++| |.+++ .++|++++++++.+.+...... .......+.+.++.+++++.++++.+.+ +++.+++++
T Consensus 214 ~~~di~~~s~sK~~g~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 291 (423)
T 3lvm_A 214 LKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRG 291 (423)
T ss_dssp SCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEechHHhcCC--CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458988765 95433 4689999988776655431000 0000122345678888888888887654 456777778
Q ss_pred HHHHHHHHHHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------------
Q psy8199 557 DMKKITKALTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------- 617 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------- 617 (965)
+.+++.+.|+++ +++..+... +.++.+.+. . . ....+.+.|.+ +.+.++
T Consensus 292 ~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~ 359 (423)
T 3lvm_A 292 LRNRLWNGIKDI---EEVYLNGDLEHGAPNILNVSFN--Y-V----EGESLIMALKD--LAVSSGSACTSASLEPSYVLR 359 (423)
T ss_dssp HHHHHHHHHTTS---TTEEEESCSTTBCTTEEEEEET--T-S----CHHHHHHHTTT--EECBCCCC-----CCCCHHHH
T ss_pred HHHHHHHHHhcC---CCEEEeCCccccCCCeEEEEeC--C-C----CHHHHHHHHhh--heeccCccccCCCccccHHHH
Confidence 888888877654 454433322 345555553 1 1 13345566655 665542
Q ss_pred ---------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 ---------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++..+++++++++++++.+++..
T Consensus 360 ~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 360 ALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998876543
No 128
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.89 E-value=7.7e-22 Score=226.26 Aligned_cols=304 Identities=12% Similarity=0.044 Sum_probs=209.4
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCC---------CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~ 362 (965)
..+..+.+..+++.+.+..+... ++|++++|+++|+..+++++.. ++++|++.+++|+++...
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--------PGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--------CCCEEEEeCCCcHHHHHH
Confidence 44556778888888877666443 5899999999999999998742 468899999999997544
Q ss_pred cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---------CcEEEEEEcccccc
Q psy8199 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---------NKIAAIIIEPLVQC 433 (965)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~aaii~ep~v~~ 433 (965)
....+. .+..+|.... + .|+++|+++++++. .++++|++.|.++|
T Consensus 149 ~~~~g~-------------~~~~v~~~~~-~------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~N 202 (425)
T 2r2n_A 149 LHPLGC-------------NIINVASDES-G------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNN 202 (425)
T ss_dssp HGGGTC-------------EEEEECEETT-E------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCT
T ss_pred HHHcCC-------------EEEEeCcCCC-C------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcC
Confidence 322221 2233332110 0 26788999886321 34667777654688
Q ss_pred CCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc---CCCcceeeeccccCCCcccceeeeecHHH
Q psy8199 434 AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA---EIWPDFLCLSKGITGGYLPLSLVMTTDKI 509 (965)
Q Consensus 434 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pDivt~sK~l~gG~~pig~v~~~~~i 509 (965)
++|.+. +.+.+++|.++|++||+++|+||+|+++.+.|.. .....+ +....+.+|||.++.| +++|++++++++
T Consensus 203 PtG~~~-~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l 280 (425)
T 2r2n_A 203 PTGNSL-TSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPL 280 (425)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHH
T ss_pred CCCCcC-CHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHH
Confidence 889765 7888999999999999999999999987665542 122222 2223345899999866 899999999999
Q ss_pred HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHcccCCCcee-e-eece
Q psy8199 510 YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-------NILQRISQDMKKITKALTSLITHPKII-N-FRQK 580 (965)
Q Consensus 510 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~-------~~~~~~~~~~~~l~~~L~~l~~~~~i~-~-v~g~ 580 (965)
++.+.. .....+++.++++++++.++|+.+.++ ...++++++.+++.+.|++. .|++. . .+..
T Consensus 281 ~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~p~~ 352 (425)
T 2r2n_A 281 IERVIL------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW--LTGLAEWHVPAA 352 (425)
T ss_dssp HHHHHH------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSEEECCCSB
T ss_pred HHHHHH------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCeEEeCCCc
Confidence 888765 234567888999999999999864322 23344455556666666542 23432 2 2455
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+++++.+. .. ... ...+.+.|.++||.+.|+ .+++||+++. .++++++++++++.+.+
T Consensus 353 g~~~~~~~~-~~-~~~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 353 GMFLWIKVK-GI-NDV---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp SSEEEEEET-TC-SCC---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeC-CC-CCH---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHH
Confidence 777777774 11 111 222467788999999873 2689999763 69999999999987654
No 129
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.89 E-value=6.2e-23 Score=235.46 Aligned_cols=303 Identities=13% Similarity=0.099 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH--HHHHHHHHHHHhcCCCC--------ceEEEEEcCCccCCccccccc
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE--VALKMSFHYWYNKGFLN--------KKKFICLQNSYHGETLGALAV 366 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~--~Al~~a~~~~~~~g~~~--------~~~vi~~~~~yHg~~~~~~~~ 366 (965)
....+|.+.++++++...+++++++|+++|+. .+++..... .++ +++|++.+++|+++.......
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~-----~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 144 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHG-----VRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL 144 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTC-----CTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhcc-----CCCccccccCCCCEEEEcCCCcHHHHHHHHHc
Confidence 44568888888888777789999999999997 777765431 023 589999999999985443332
Q ss_pred cCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHH
Q psy8199 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 446 (965)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~ 446 (965)
+. .+..+|.... . .|+++|++++++ ..++++|+++|.++|++|.+. +.+.++
T Consensus 145 g~-------------~~~~v~~~~~--g-----------~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~~~-~~~~l~ 196 (423)
T 3ez1_A 145 GF-------------ELLTVDMQSD--G-----------PDVDAVERLAGT-DPSVKGILFVPTYSNPGGETI-SLEKAR 196 (423)
T ss_dssp TC-------------EEEEEEEETT--E-----------ECHHHHHHHHHS-CTTEEEEEECSSSCTTTCCCC-CHHHHH
T ss_pred CC-------------EEEeccCCCC--C-----------CCHHHHHHHHhh-CCCceEEEECCCCCCCCCcCC-CHHHHH
Confidence 22 2233332211 0 267899998853 346788888764688888776 667799
Q ss_pred HHHHHH-HhcCCeEEEeccccCCCccc-c------cccc----cccCCCcceeeeccccCCCcccceeeeecHHHHHhhh
Q psy8199 447 LVREIC-NNYNIHLIADEIAVGCGRTG-K------FFAC----EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY 514 (965)
Q Consensus 447 ~l~~l~-~~~g~llI~DEv~tg~gr~G-~------~~~~----~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~ 514 (965)
+|.++| ++||+++|+||+|+.+...+ . .+.. +..+....+.+|||.+.+| +++|++++++++++.+.
T Consensus 197 ~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 197 RLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLS 275 (423)
T ss_dssp HHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHH
Confidence 999999 99999999999998432222 1 1111 1122223355899986556 89999999999998886
Q ss_pred ccCCcccccccCCCCCCHHHHHHHHHHHHH-Hh--c---ccHHHHHHHHHHHHHHHHHc-ccCCC-ceee-eeceeEEEE
Q psy8199 515 YKNNINIFLHSHSYSGNPLACCAALATLEI-FN--K---DNILQRISQDMKKITKALTS-LITHP-KIIN-FRQKGMIWA 585 (965)
Q Consensus 515 ~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~--~---~~~~~~~~~~~~~l~~~L~~-l~~~~-~i~~-v~g~G~~~~ 585 (965)
. ..+..+++.++++++++.++|+. .. . ....+.++++.+.+.+.|.+ +...+ .+.. .+..|++++
T Consensus 276 ~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~ 349 (423)
T 3ez1_A 276 K------YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFIS 349 (423)
T ss_dssp H------HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEE
T ss_pred H------HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEE
Confidence 5 34556788999999999998875 11 0 11233344445555555543 23333 2432 234577777
Q ss_pred EEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 586 FDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 586 i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+.+. .. ....+.+.|.++||++.|. .+++||+++.. ++++++++++++.+++..
T Consensus 350 ~~~~--~~-----~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 350 LDTA--EP-----VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp EEES--SS-----CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EECC--CC-----cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 7775 21 1346778889999999882 26899998755 999999999998876543
No 130
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.89 E-value=7.9e-23 Score=230.18 Aligned_cols=325 Identities=10% Similarity=0.070 Sum_probs=224.9
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhcc---c---cccCCCCcHHHHHHHHH-HHhhcCCCCCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---H---VMLSNLTHKPVIKLSEK-LSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~---~---~~~~~~~~~~~~~la~~-l~~~~~~~~~~v~~~~sGseA 326 (965)
-.|||+.+ +.|+.+|++.+|+.+++.... + +....+..+...++.+. ++++++.. .++|++||++|
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a 81 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREA 81 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHH
Confidence 35677633 346689999999999886542 1 11123456677899999 99999754 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEec--CCCCCCCCCCCChhHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT--TPDSRNINKGNSANEIA 404 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 404 (965)
++.+++.+. .++++|++.+++||+........ | ..+..+| .... ..
T Consensus 82 ~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~-~~---------- 129 (371)
T 2e7j_A 82 KFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERA-G------------LNIALVPKTDYPD-YA---------- 129 (371)
T ss_dssp HHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHT-T------------CEEEEECCCCTTT-CC----------
T ss_pred HHHHHHHHh--------CCCCEEEEccCcchHHHHHHHHc-C------------CeEEEeecccCCC-CC----------
Confidence 999999873 25689999999999885442221 1 1234454 2211 11
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 405 RCAIFDLEILLKKNH--NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~~~--~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|+++++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....+
T Consensus 130 -~d~~~l~~~l~~~~~~~~~~~v~~~~-~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~-- 198 (371)
T 2e7j_A 130 -ITPENFAQTIEETKKRGEVVLALITY-PDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEI-- 198 (371)
T ss_dssp -CCHHHHHHHHHHHTTTSCEEEEEEES-SCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHH--
T ss_pred -cCHHHHHHHHHhhcccCCeEEEEEEC-CCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhc--
Confidence 26788888886431 4678899988 8999999887 799999999999999999999753 332 222223
Q ss_pred Cccee--eeccccCCCcccceeeeecHHHHHh-hhccCCccccccc---CCCCCCHHHHHHHHHHHHHHhcccHHHHH--
Q psy8199 483 WPDFL--CLSKGITGGYLPLSLVMTTDKIYNS-IYYKNNINIFLHS---HSYSGNPLACCAALATLEIFNKDNILQRI-- 554 (965)
Q Consensus 483 ~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~-~~~~~~~~~~~~~---~t~~~~~~~~aaa~a~L~~~~~~~~~~~~-- 554 (965)
.+|++ +++|++++| .++|++++++++++. +... ...+.+. .+++.++.+++++.++++.+.+ .+.+++
T Consensus 199 ~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~ 274 (371)
T 2e7j_A 199 GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRS--EKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEE 274 (371)
T ss_dssp TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBC--SSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHH
T ss_pred CCCEEEecCCcCCCCC-CCcEEEEEechhhhhhcccc--ccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 36776 469999887 499999999988776 6431 0001110 0456788888888899988765 677888
Q ss_pred HHHHHHHHHHHHcccCCCceeeeec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee--------c--CCEE
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--------I--GNTV 621 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--------~--~~~l 621 (965)
+++.+++.+.|+++ ++..+.+ .|.++.+.+. ....+.+.|.++||.+.| + .+++
T Consensus 275 ~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~i 341 (371)
T 2e7j_A 275 VEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFHAE---------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLT 341 (371)
T ss_dssp HHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEECH---------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCC
T ss_pred HHHHHHHHHHHHHc----CcEEecCCCccCceEEEECC---------CHHHHHHHHHHCCEEEEeccccccccCCCCCce
Confidence 88899999998775 2322222 4667777652 134677788889998865 1 3678
Q ss_pred E-EeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 622 Y-LMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R-~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
| ++++.. +++++++++++++.+.+
T Consensus 342 Rii~~~~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 342 RYFKLSTYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp SEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeeccCCCHHHHHHHHHHHHHHH
Confidence 9 998877 89999999999887643
No 131
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.88 E-value=3.7e-22 Score=226.95 Aligned_cols=345 Identities=12% Similarity=0.009 Sum_probs=222.3
Q ss_pred cCCcccccccccchhccCCCCC--HHHHHHHHH-HHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCC--eEEEcC
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSN--SYINKALKN-QLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFYGS 321 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~--p~v~~av~~-~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~--~v~~~~ 321 (965)
.....++|+..|.+..+.|+.+ |+|.+|+.+ +++... .+....+..+.+..+++.+....+ ...+ ++++++
T Consensus 23 ~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~ 102 (397)
T 3fsl_A 23 DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTL 102 (397)
T ss_dssp CCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcC
Confidence 3445789999987666777776 999999999 887531 222223345556666666654321 0356 899999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCCh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSA 400 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 400 (965)
||++|++.++++.... .++++|++.+++|+++.......+. .+..+|.. ...+.
T Consensus 103 g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------ 157 (397)
T 3fsl_A 103 GGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGF-------------EVSTYPWYDEATNG------ 157 (397)
T ss_dssp HHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTC-------------CEEEECCEETTTTE------
T ss_pred CcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCC-------------ceEEEeeeeccCCc------
Confidence 9999999998765433 3668899999999987544333222 33444441 11111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~ 478 (965)
.|+++|+++++++.+++.++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ ......
T Consensus 158 -----~d~~~l~~~l~~~~~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 230 (397)
T 3fsl_A 158 -----VRFNDLLATLKTLQAGSIVLLHPC-CHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIR 230 (397)
T ss_dssp -----ECHHHHHHHHTTCCTTCEEEECSS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHH
T ss_pred -----CcHHHHHHHHHhCCCCCEEEEeCC-CCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHH
Confidence 268899999976545667777766 699999765 67779999999999999999999999886542 222221
Q ss_pred cc-CCCcce---eeeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----
Q psy8199 479 HA-EIWPDF---LCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF----- 545 (965)
Q Consensus 479 ~~-~~~pDi---vt~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~----- 545 (965)
.+ +..+++ .+|||.++ .| +++|++++ ++++++.+... ........+.+.++++++++.++|+..
T Consensus 231 ~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 307 (397)
T 3fsl_A 231 AIASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQ--LKATVRRNYSSPPNFGAQVVAAVLNDEALKAS 307 (397)
T ss_dssp HHHHTTCCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHH--HHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHH
T ss_pred HHHhcCCCEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHHH--HHHHHHhccCCCCHHHHHHHHHHhcCHHHHHH
Confidence 11 222333 36899987 46 89999874 45555543220 001112334455778888777766521
Q ss_pred -h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEE
Q psy8199 546 -N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTV 621 (965)
Q Consensus 546 -~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~l 621 (965)
. -+...++++++.+++.+.|+++....++....+. |++..+.+. ...+.+.+.++||++.|++
T Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~v~~g~--- 374 (397)
T 3fsl_A 308 WLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------AAQVDRLREEFGVYLIASG--- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----------HHHHHHHHHhCCEEECCCC---
Confidence 1 1345677788888888888776211133333344 444443332 2345667788999999875
Q ss_pred EEeCCcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
||+++ .+++++++++++++.++
T Consensus 375 Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 375 RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred eEEEE-ecCHhhHHHHHHHHHhh
Confidence 88864 44778899999887653
No 132
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.88 E-value=2e-21 Score=222.42 Aligned_cols=337 Identities=10% Similarity=0.063 Sum_probs=226.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-ccccc----CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+|..|||+.+ .|+.+|+|.+|+.+++... ..... .....+...++.++++++++.+.++++|++||++|
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5788999854 3578999999999998753 11110 00123667899999999998666799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.++.+.. .+. +++++|++++.+|+++..++...... . .....+..+|.
T Consensus 101 l~~al~~~~~~~~-~~~-~gd~vii~~~~~~~~~~~~~~~~~~~-----~-~~g~~~~~v~~------------------ 154 (416)
T 1qz9_A 101 LFKVLSAALRVQA-TRS-PERRVIVTETSNFPTDLYIAEGLADM-----L-QQGYTLRLVDS------------------ 154 (416)
T ss_dssp HHHHHHHHHHHHH-HHS-TTCCEEEEETTSCHHHHHHHHHHHHH-----H-CSSCEEEEESS------------------
T ss_pred HHHHHHhhccccc-ccC-CCCcEEEEcCCCCCchHHHHHHHHHH-----h-cCCceEEEeCc------------------
Confidence 9999998763210 001 33467777777888644332110000 0 00112333332
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|... +....+ .+|+
T Consensus 155 -~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~ 220 (416)
T 1qz9_A 155 -PEELPQAID---QDTAVVMLTH-VNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADY 220 (416)
T ss_dssp -GGGHHHHCS---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSE
T ss_pred -HHHHHHHhC---CCceEEEEec-cccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCE
Confidence 356677664 3678888988 8999999887 8999999999999999999996 55432 122222 4788
Q ss_pred eee--ccccCCCcccc-eeeeecHHHHHhhhccCCccc------------c-----ccc-CCCCCCHHHHHHHHHHHHHH
Q psy8199 487 LCL--SKGITGGYLPL-SLVMTTDKIYNSIYYKNNINI------------F-----LHS-HSYSGNPLACCAALATLEIF 545 (965)
Q Consensus 487 vt~--sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~------------~-----~~~-~t~~~~~~~~aaa~a~L~~~ 545 (965)
+++ +|.+++| .++ |++++++++++.+... .... + ... ...+.++.+++++.++|+.+
T Consensus 221 ~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 298 (416)
T 1qz9_A 221 AIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQP-LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 298 (416)
T ss_dssp EEECSSSTTCCC-TTCCCEEEECTTTTTTSCCS-CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred EEecCcccCCCC-CCCeEEEEECHHHHhccCCC-ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH
Confidence 876 5998777 577 9999999887665431 0000 0 001 12346788888888999987
Q ss_pred hc---ccHHHHHHHHHHHHHHHHHcccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 546 NK---DNILQRISQDMKKITKALTSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 546 ~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
.+ +++.++++++++++.+.|+++...+++..+. ..+.++.+.+. + ...+.+.|.++||.+...
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-------~~~l~~~l~~~gi~~~~~ 369 (416)
T 1qz9_A 299 AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--E-------GYAVIQALIDRGVIGDYR 369 (416)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--T-------HHHHHHHHHTTTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--C-------HHHHHHHHHhCCcEeccC
Confidence 64 3467888888999999887651100222222 23566666653 1 346778899999998763
Q ss_pred -CCEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 618 -GNTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -~~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+|++++ +.+++++++++++++.+.+
T Consensus 370 ~~~~lRis~~~~~~t~~~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 370 EPRIMRFGFTPLYTTFTEVWDAVQILGEIL 399 (416)
T ss_dssp TTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 479999987 6899999999999887653
No 133
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.88 E-value=1.2e-21 Score=227.71 Aligned_cols=352 Identities=14% Similarity=0.102 Sum_probs=212.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|+.|||+.+++++ |.|.+++.+++..... .....+...+++++++++++ .++++|++||++|++.|+
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~---~y~~~~~~~~l~~~la~~~~--~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE---AYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC---CSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc---ccccCccHHHHHHHHHHHcC--CCcEEEcCCcHHHHHHHH
Confidence 57899999887653 7788888877654321 12345677899999999985 589999999999999999
Q ss_pred HHHHHHHHhcCCCCceE---EEEEcCCcc-CCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChhHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKK---FICLQNSYH-GETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIAR 405 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~---vi~~~~~yH-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 405 (965)
++++.++.. +++. ||+. .|| +.+..++...|..... .+... .++.. ..... .
T Consensus 109 ~~~~~~~~~----~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~---~~~~~---~~~~~~~~~~~~----------~ 166 (467)
T 1ax4_A 109 PVLLKYKQK----EGKAKNPVFIS--NFHFDTTAAHVELNGCKAIN---IVTEK---AFDSETYDDWKG----------D 166 (467)
T ss_dssp HHHHHHHHH----TTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEE---CBCGG---GGCTTSCCTTTT----------C
T ss_pred HHHHHhhcc----CCCccceEEEe--ccccchhhHHHhccCCceec---ccccc---cccccccCCccc----------c
Confidence 998764321 2233 5655 455 4434444433321100 00000 00000 00000 0
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----C------Cccccc
Q psy8199 406 CAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----C------GRTGKF 474 (965)
Q Consensus 406 ~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----~------gr~G~~ 474 (965)
.|+++|++++++.. +++++|+++| ++|++|..+++.+++++|+++|++||++||+||++.. | +..|..
T Consensus 167 ~d~~~le~~i~~~~~~~~~~vi~~~-~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~ 245 (467)
T 1ax4_A 167 FDIKKLKENIAQHGADNIVAIVSTV-TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 245 (467)
T ss_dssp BCHHHHHHHHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC
T ss_pred cCHHHHHHHHHhcCCCCeeEEEEec-cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc
Confidence 36889999997532 4689999999 8999866777899999999999999999999998652 0 111110
Q ss_pred ccccccC----CCcceeeeccccCCCcccceeee-ec-H-HHHHhhhccCCcccccccCCCCCCHHHHHHHH-HHHHHHh
Q psy8199 475 FACEHAE----IWPDFLCLSKGITGGYLPLSLVM-TT-D-KIYNSIYYKNNINIFLHSHSYSGNPLACCAAL-ATLEIFN 546 (965)
Q Consensus 475 ~~~~~~~----~~pDivt~sK~l~gG~~pig~v~-~~-~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~-a~L~~~~ 546 (965)
...++ ..+|++++|.+.+.| .|+|+++ ++ + ++++.+..- ...+....++++++..+.++. ++|+...
T Consensus 246 --~~~~~~~~~~~~d~~~~s~sK~~g-~~~Gg~~~~~d~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 246 --IKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAIRDNEEIFTLARQR--CVPMEGFVTYGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp --HHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEESSCHHHHHHHHHH--HHHHTCSTTTTTCCHHHHHHHHHHHHHTT
T ss_pred --hhhhhhhhccccceEEEeccccCC-CCcceEEEeCCHHHHHHHHHhh--ccccccccccCCccchHHHHHHHHHHHhh
Confidence 00000 125776554433344 4776555 55 5 787765431 000111235555555444433 3676554
Q ss_pred cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEee--cCccchhhHHHHHHHHH-HHcCcEEeec------
Q psy8199 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII--EDPEQIETFSKKFFVAA-LKNELLLRPI------ 617 (965)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~--~~~~~~~~~~~~~~~~l-~~~Gi~~~~~------ 617 (965)
+++..++..++++++.+.|++. ..+.+. +..|.++++.... ..-.........+.+.| .++||.+.+.
T Consensus 321 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~ 397 (467)
T 1ax4_A 321 EEEYLHYRIGQVKYLGDRLREA-GIPIQY--PTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLG 397 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHhC-CCCccc--CCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccc
Confidence 4445666667888888888762 222222 2234445554110 00000011144677888 8999998771
Q ss_pred -----C-------CEEEEeCC-cccCHHHHHHHHHhhhcccc
Q psy8199 618 -----G-------NTVYLMPP-YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -----~-------~~lR~~p~-~~~t~~~i~~~~~~l~~~~~ 646 (965)
+ +++||++| ..+++++++++++++.+.+.
T Consensus 398 ~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 439 (467)
T 1ax4_A 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 439 (467)
T ss_dssp BCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred cccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 2 68999999 55999999999999877654
No 134
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.88 E-value=2.9e-21 Score=214.33 Aligned_cols=313 Identities=10% Similarity=0.059 Sum_probs=218.2
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+.+.+||+.++. +++| .+|.+.+++.++++... .++.+...++.+.++++++...+++++++|+++++..++
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~ 85 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARIN-----RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRIS 85 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTT-----SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhc-----cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHH
Confidence 456789998873 5677 68999999998877642 345667789999999999877779999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+ ++++|++.+++|+++.......+ ..+..+|...... .|+++|
T Consensus 86 ~~~----------~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~------------~d~~~l 130 (337)
T 3p1t_A 86 AEF----------SSMRFVTAWPGFDGYRARIAVSG-------------LRHFEIGLTDDLL------------LDPNDL 130 (337)
T ss_dssp HHS----------TTSEEEEESSSCSHHHHHHTTSC-------------CEEEEECBCTTSS------------BCHHHH
T ss_pred Hhc----------CCCeEEEeCCCcHHHHHHHHHcC-------------CEEEEecCCCCCC------------CCHHHH
Confidence 865 35789999999988743332221 1233444322111 256666
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeecc
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK 491 (965)
+++ . ++.+|++.. ++|++|.+.+ ++++.++|+++++ +|+||+|.+|+..+... ....+....+.++||
T Consensus 131 ~~~----~-~~~~v~i~~-p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK 198 (337)
T 3p1t_A 131 AQV----S-RDDCVVLAN-PSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSK 198 (337)
T ss_dssp TTC----C-TTEEEEEES-SCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSS
T ss_pred Hhh----c-CCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCch
Confidence 653 2 234555555 5899999887 7788899999997 56699999876543221 111111112337899
Q ss_pred ccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 492 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 492 ~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
.++ .| +++|++++++++++.+.. ...+++.++++++++.++|+... -+...+++.++.+++.+.|+++
T Consensus 199 ~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 268 (337)
T 3p1t_A 199 SYGLAG-LRLGALFGPSELIAAMKR--------KQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL- 268 (337)
T ss_dssp TTCCTT-TCCEEEECCHHHHHHHHT--------TSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hccCcc-hheEEEEeCHHHHHHHHh--------hcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 997 45 899999999999988865 23456788999998888886322 1234556666777777777665
Q ss_pred CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 570 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++....+.|.++.+... + ...+.+.|.++||.+.++. +++|++.. ++++++++++++.+.
T Consensus 269 ---g~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~ 333 (337)
T 3p1t_A 269 ---GYRVASSEANFVLVENA--A-------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEY 333 (337)
T ss_dssp ---TCCBCCCSSSEEEEECT--T-------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ---cCEECCCCCeEEEEEcC--C-------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHH
Confidence 34445667888776653 2 1246677889999998853 79999943 788999998887654
No 135
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.88 E-value=5.1e-22 Score=226.98 Aligned_cols=342 Identities=10% Similarity=0.007 Sum_probs=218.9
Q ss_pred CCcccccccccchhccCCC--CCHHHHHHHHH-HHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE--cCC
Q psy8199 252 SGKRYLDAISSWWVNLFGH--SNSYINKALKN-QLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSD 322 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh--~~p~v~~av~~-~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~s 322 (965)
+|+.++||.+|.+..+.|+ .+|.+.+|+.+ +++.. ..+....+..+.+..+++.+....+ ...++|++ ++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 5788999988865344443 46899999998 87532 1122222334445555555543221 13578999 999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChh
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSAN 401 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 401 (965)
|++|++.+++++..+ .++++|++.+++|+++.......+. .+..+|. ......
T Consensus 107 ~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~------- 160 (412)
T 1yaa_A 107 GTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGL-------------KTATYPYWANETKS------- 160 (412)
T ss_dssp HHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTC-------------CEEEEECEETTTTE-------
T ss_pred hHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCc-------------eEEEEeeecCCCCc-------
Confidence 999999998766554 3567899999999998544333222 2333333 100111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc---ccccc-
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG---KFFAC- 477 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~- 477 (965)
.|+++|++++++.+...+++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|++.| .....
T Consensus 161 ----~d~~~l~~~l~~~~~~~~~~~~~~-p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 234 (412)
T 1yaa_A 161 ----LDLNGFLNAIQKAPEGSIFVLHSC-AHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVR 234 (412)
T ss_dssp ----ECHHHHHHHHHHSCTTCEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHH
T ss_pred ----cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHH
Confidence 267889988876433345555344 589899765 78889999999999999999999999886654 22222
Q ss_pred cccCCCc---ce---eeeccccCC-Ccccceeee--e-----cHH----HHHhhhccCCcccccccCCCCCCHHHHHHHH
Q psy8199 478 EHAEIWP---DF---LCLSKGITG-GYLPLSLVM--T-----TDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539 (965)
Q Consensus 478 ~~~~~~p---Di---vt~sK~l~g-G~~pig~v~--~-----~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 539 (965)
...+..+ ++ .+|||.++. | +++|+++ + +++ +++.+.. .....+.+.++++++++.
T Consensus 235 ~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~ 307 (412)
T 1yaa_A 235 LGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAK------IIRSEVSNPPAYGAKIVA 307 (412)
T ss_dssp HHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHH
T ss_pred HHHhcCCCCcceEEEeccCCCCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHH------HHhhccCCCChHHHHHHH
Confidence 1112233 23 378999987 6 8999998 7 666 6666543 122334455899999999
Q ss_pred HHHHHHh--------cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 540 ATLEIFN--------KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 540 a~L~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
++|+... -+...++++++.+++.+.|+++....++....+.|.++.+.-. + ...+...+.++|
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~g 378 (412)
T 1yaa_A 308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--T-------PQMVKRLEETHA 378 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--C-------HHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--C-------HHHHHHHHHhCC
Confidence 9887441 2345667777888888888765210023333444544433211 1 123545556889
Q ss_pred cEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++.+ .+||+++. .++++++++++++.+.+
T Consensus 379 i~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 379 VYLVA---SGRASIAG-LNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp EECCT---TSEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred EEecc---CcEEEEcc-CCHhHHHHHHHHHHHHH
Confidence 99987 47999763 58899999998876543
No 136
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.88 E-value=6.1e-21 Score=217.59 Aligned_cols=335 Identities=11% Similarity=0.064 Sum_probs=222.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
++..|||+.++. +.+|++.+|+.++++.........+ ..+...++.+.++++++.+.++++|++||++|
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL 98 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence 457899987652 4789999999999876421111112 24567889999999997666799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++...... .++++|++.+++|++.......+.. .....+.++|.....+. .
T Consensus 99 l~~~~~~l~~~~-----~~gd~vi~~~~~~~~~~~~~~~~~~---------~~g~~v~~v~~~~~~~~-----------~ 153 (406)
T 3cai_A 99 LSLLAEASSSRA-----GLGYEVIVSRLDDEANIAPWLRAAH---------RYGAKVKWAEVDIETGE-----------L 153 (406)
T ss_dssp HHHHHHHTGGGG-----BTTCEEEEETTSCGGGTHHHHHHHH---------HHBCEEEEECCCTTTCC-----------C
T ss_pred HHHHHHHHhhcc-----CCCCEEEEcCCccHHHHHHHHHHHH---------hcCCeEEEEecCcccCC-----------c
Confidence 999887542100 3567899999999876322211100 00113444544211111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....++ +|+
T Consensus 154 d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~~--~d~ 220 (406)
T 3cai_A 154 PTWQWESLIS---KSTRLVAVNS-ASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR--LLDIRETD--ADV 220 (406)
T ss_dssp CGGGHHHHCC---TTEEEEEEES-BCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC--CCCHHHHC--CSE
T ss_pred CHHHHHHHhC---CCceEEEEeC-CcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--CCCchhcC--CCE
Confidence 5678888774 4678888888 8999999887 8899999999999999999996 4322 12222333 687
Q ss_pred ee--eccccCCCcccce-eeeecHHHHHhhhccCCc-cc-c-cccCCCCCCHHHHHHHHHHHHHHhc-------------
Q psy8199 487 LC--LSKGITGGYLPLS-LVMTTDKIYNSIYYKNNI-NI-F-LHSHSYSGNPLACCAALATLEIFNK------------- 547 (965)
Q Consensus 487 vt--~sK~l~gG~~pig-~v~~~~~i~~~~~~~~~~-~~-~-~~~~t~~~~~~~~aaa~a~L~~~~~------------- 547 (965)
++ ++|.++ + ++| ++++++++++.+...... .. . ......+.|+.+++++.++|+.+.+
T Consensus 221 ~~~s~~K~~g-~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~ 297 (406)
T 3cai_A 221 VTVNAHAWGG-P--PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERL 297 (406)
T ss_dssp EEEEGGGGTS-C--SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHH
T ss_pred EEeehhhhcC-C--CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 75 579654 3 388 999999988766531000 00 0 0001234678888888888887754
Q ss_pred ----ccHHHHHHHHHHHHHHHHHcccCCCceeeeec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--
Q psy8199 548 ----DNILQRISQDMKKITKALTSLITHPKIINFRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-- 618 (965)
Q Consensus 548 ----~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-- 618 (965)
+.+.++++++.+++.+.|+++ +++....+ .+.++.+.+. . .....+.+.|.++||.+.++.
T Consensus 298 ~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~L~~~gi~v~~g~~~ 367 (406)
T 3cai_A 298 AVSMQSADAYLNRVFDYLMVSLRSL---PLVMLIGRPEAQIPVVSFAVH--K-----VPADRVVQRLADNGILAIANTGS 367 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---TTEEECCCCSSBCSEEEEEET--T-----BCHHHHHHHHHHTTEECEECCSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEcCCccccCCEEEEEEC--C-----cCHHHHHHHHHHCCcEEecCChH
Confidence 235566677777777777654 44432222 3456666653 1 113467788889999998642
Q ss_pred ------------CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 619 ------------NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 619 ------------~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++|++++...++++++++++++.+
T Consensus 368 ~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 368 RVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 6899999998999999999998865
No 137
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.87 E-value=2.1e-22 Score=231.22 Aligned_cols=343 Identities=11% Similarity=0.028 Sum_probs=220.0
Q ss_pred ccccccccchhccCCCCCHHHHHHH--HHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHH--HHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKAL--KNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV--EVA 330 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av--~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~--~~A 330 (965)
..+||..|.....+...++.+.+++ .+++.................+|.+.++++++...++|++|+|+++|+ +.+
T Consensus 34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 113 (427)
T 3ppl_A 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVI 113 (427)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHH
T ss_pred ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHH
Confidence 3577776644322222222344444 443333211111112223456777777777776778999999999999 578
Q ss_pred HHHHHHHHHhcCCC---------CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 331 LKMSFHYWYNKGFL---------NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 331 l~~a~~~~~~~g~~---------~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
++++... .+ ++++|++.+++|+++.......+. .++.+|.... +
T Consensus 114 ~~~l~~~-----~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g-------- 166 (427)
T 3ppl_A 114 SWSYIFG-----NNDSVQPWSKEETVKWICPVPGYDRHFSITERFGF-------------EMISVPMNED-G-------- 166 (427)
T ss_dssp HHHHHHC-----CTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTC-------------EEEEEEEETT-E--------
T ss_pred HHHHhcc-----CCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCC-------------EEEEeCCCCC-C--------
Confidence 7766431 01 168999999999987543333222 2333333211 0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH-HhcCCeEEEeccccCCCccccc----cc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC-NNYNIHLIADEIAVGCGRTGKF----FA 476 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G~~----~~ 476 (965)
.|+++|+++++ ..++.+|+++|.++|++|.+. +.+.+++|.++| ++||+++|+||+|+++...+.. ..
T Consensus 167 ----~d~~~l~~~l~--~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 239 (427)
T 3ppl_A 167 ----PDMDAVEELVK--NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDI 239 (427)
T ss_dssp ----ECHHHHHHHTT--STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCH
T ss_pred ----CCHHHHHHHHh--cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccch
Confidence 26788888884 346788888865788888876 666699999999 9999999999999984333221 11
Q ss_pred cc------ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH---hc
Q psy8199 477 CE------HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF---NK 547 (965)
Q Consensus 477 ~~------~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~---~~ 547 (965)
.. ..+....+.+|||.++.| +++|++++++++++.+.. ..+..+++.+++++.++.++|+.. .+
T Consensus 240 ~~~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 312 (427)
T 3ppl_A 240 VGLGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTG------HAGIRGIGPNKVNQLAHARYFGDAEGVRA 312 (427)
T ss_dssp HHHHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHH
T ss_pred hhhhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHhChhhHHH
Confidence 11 223344566899986556 899999999999888865 234567788999999988887531 11
Q ss_pred --ccHHHHHHHHHHHHHHHHHc-ccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------
Q psy8199 548 --DNILQRISQDMKKITKALTS-LITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------- 616 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~-l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------- 616 (965)
....+.++++.+.+.+.|.+ +...+++.. .+..|+++++.+. +. ....+.+.|.++||.+.|
T Consensus 313 ~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~--~~-----~~~~~~~~l~~~gv~v~~~g~~~~~ 385 (427)
T 3ppl_A 313 VMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVV--PG-----TASRVAELAKEAGIALTGAGSSYPL 385 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECS--TT-----CHHHHHHHHHHTTEECCCTTTTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECC--cc-----hHHHHHHHHHHCCCEEecCcCcCCC
Confidence 12344455555566666644 222223332 2334677777764 21 144677888999999987
Q ss_pred ----cCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 617 ----IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 617 ----~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
..+++||+++.. ++++++++++++.+++.
T Consensus 386 ~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 386 RQDPENKNLRLAPSLP-PVEELEVAMDGVATCVL 418 (427)
T ss_dssp GCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHH
Confidence 236899998655 89999999999877654
No 138
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.87 E-value=2.3e-21 Score=219.17 Aligned_cols=328 Identities=12% Similarity=0.051 Sum_probs=221.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc-cccc----CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
.|||+.++ |+.+|+|.+|+.++++... .... .....+...++.+.++++++.+.+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 58887664 4689999999999987631 1000 01123456789999999997666799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc--cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL--AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+++.+..++ ..++++|++.+++||+...... ...| ..+..+|.... +. .|
T Consensus 77 ~~~~~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~-----------~d 128 (384)
T 1eg5_A 77 ILKTVAETF----EKRKRTIITTPIEHKAVLETMKYLSMKG------------FKVKYVPVDSR-GV-----------VK 128 (384)
T ss_dssp HHHHHHHHT----TTTCCEEEECTTSCHHHHHHHHHHHHTT------------CEEEECCBCTT-SC-----------BC
T ss_pred HHHhhhhhc----cCCCCEEEECCCCchHHHHHHHHHHhcC------------CEEEEEccCCC-Cc-----------cC
Confidence 999886311 0246789999999988643321 1111 12333333211 11 36
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC--CeEEEeccccCCCcccccccccccCCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++|| +++|+||+|+ ||.. .+... ...+|
T Consensus 129 ~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~~d 195 (384)
T 1eg5_A 129 LEELEKLVD---EDTFLVSIMA-ANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLEVD 195 (384)
T ss_dssp HHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTCCS
T ss_pred HHHHHHHhC---CCCeEEEEEC-CCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcCCC
Confidence 788888875 3578888888 8999999887 899999999999 9999999997 6543 12222 23578
Q ss_pred eeeec--cccCCCcccceeeeecHHH--HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 486 FLCLS--KGITGGYLPLSLVMTTDKI--YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 486 ivt~s--K~l~gG~~pig~v~~~~~i--~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
++++| |.++. ..+|++++++++ ...+.. .. ......+++.++++++++.++|+.+.+ ++..++++++.+
T Consensus 196 i~~~s~sK~~g~--~G~G~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 270 (384)
T 1eg5_A 196 YASFSAHKFHGP--KGVGITYIRKGVPIRPLIHG-GG--QERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRS 270 (384)
T ss_dssp EEEEEGGGGTSC--TTCEEEEECTTSCCCCSBCS-SC--TTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEecHHHhcCC--CceEEEEEcCCCcccccccc-Cc--ccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88766 96443 127999998875 222211 00 001124567889999999999987543 456777888888
Q ss_pred HHHHHHHcccCCCceeeeec----eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------------------
Q psy8199 560 KITKALTSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------ 617 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g----~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------ 617 (965)
++.+.|++. ++..+.. .+.++.+.+. +. ....+.+.|.++||.+.++
T Consensus 271 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g 339 (384)
T 1eg5_A 271 KLVSGLMNL----GAHIITPLEISLPNTLSVSFP--NI-----RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMG 339 (384)
T ss_dssp HHHHHHHTT----TCEECSCTTSBCTTEEEEECT--TC-----CHHHHHHHHHHTTEECBC------------CHHHHTT
T ss_pred HHHHHhCCC----CeEEeCCcccCCCCEEEEEeC--CC-----CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcC
Confidence 888888762 3322211 2345555543 10 1346778888999999873
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+++..+++++++++++++.+.+
T Consensus 340 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 373 (384)
T 1eg5_A 340 VDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (384)
T ss_dssp CCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2589999888899999999999887654
No 139
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.87 E-value=1.2e-21 Score=217.14 Aligned_cols=308 Identities=11% Similarity=0.065 Sum_probs=204.1
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA~~~A 330 (965)
.+++|+.++.. +++ .+|++.+|+.+++..... .+++.....++.+.++++++ .+.+++++++||++|++.+
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~ 92 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL---RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGGGG---GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhhhh---hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHH
Confidence 46888887743 455 689999999988743211 12222235667777777775 5668999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+ +++|++. ++||++.......+. .+..+|...... .|+++
T Consensus 93 ~~~~-----------gd~Vl~~-p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~------------~d~~~ 135 (335)
T 1uu1_A 93 MLMF-----------DRSVFFP-PTYSCYRIFAKAVGA-------------KFLEVPLTKDLR------------IPEVN 135 (335)
T ss_dssp HHHS-----------SEEEECS-SSCHHHHHHHHHHTC-------------EEEECCCCTTSC------------CCCCC
T ss_pred HHHh-----------CCcEEEC-CCcHHHHHHHHHcCC-------------eEEEeccCCCCC------------CCHHH
Confidence 8865 3678998 999998543322221 222333221101 02222
Q ss_pred HHHHHHhCCCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccccCCCcceee
Q psy8199 411 LEILLKKNHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFLC 488 (965)
Q Consensus 411 le~~l~~~~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pDivt 488 (965)
| +++++|+ ++| +|++|.+. +.+.+++|.++| | ++|+||+|++|+. +.... .+..+....+.+
T Consensus 136 l--------~~~~~v~l~~p--~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s 199 (335)
T 1uu1_A 136 V--------GEGDVVFIPNP--NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRT 199 (335)
T ss_dssp C--------CTTEEEEEESS--CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEE
T ss_pred c--------CCCCEEEEeCC--CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEec
Confidence 2 1234454 666 88999876 555555555554 8 9999999997643 22111 122222234457
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 566 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~ 566 (965)
+||.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.|+
T Consensus 200 ~sK~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 270 (335)
T 1uu1_A 200 FSKAFSLAA-QRVGYVVASEKFIDAYNR--------VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALR 270 (335)
T ss_dssp STTTTTCGG-GCCEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCcc-cCeEEEEeCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 55 899999999999888765 12456889999999999997531 23456777788888888887
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
++ ++...++.|.++.+.+. + .....+.+.|.++||++.+..+++|+++. ++++++++++++.+
T Consensus 271 ~~----g~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 271 EM----GYRITDSRGNFVFVFME--K-----EEKERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp HH----TCCBCCCCSSEEEEECC--T-----HHHHHHHHHHHHHTEEEEEETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred HC----CcEEcCCCCeEEEEECC--C-----CCHHHHHHHHHHCCEEEEECCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 65 22333455777766653 1 12346778888999999997789999953 46789999888765
No 140
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.87 E-value=1.1e-21 Score=224.66 Aligned_cols=344 Identities=10% Similarity=0.012 Sum_probs=205.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc----c------ccccCCCCcHHHHHHHHHHHhhc--CCCCCeEEEc
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----E------HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYG 320 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~------~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~ 320 (965)
+..++|+..|... ..|.+.+++.+++.+. . .|....+..+.+..+++.+.+.. +.+.++|++|
T Consensus 30 ~~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t 104 (417)
T 3g7q_A 30 TPGAIMLGGGNPA-----HIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALT 104 (417)
T ss_dssp --CCEECSCCCCC-----CCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred CCCceEecCcCCC-----CCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEe
Confidence 3567777666331 1354445555444332 1 12212222344445555554433 3456799999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCC-CCceEEEEE-cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGF-LNKKKFICL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~-~~~~~vi~~-~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+||++|++.+++.+... |. .++.+|++. +++||++...+..... +......+..++.......
T Consensus 105 ~G~t~al~~~~~~l~~~----gd~~~~~~vi~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---- 169 (417)
T 3g7q_A 105 NGSQSAFFYLFNLFAGR----RADGSTKKVLFPLAPEYIGYADSGLEDDL-------FVSARPNIELLPEGQFKYH---- 169 (417)
T ss_dssp SCHHHHHHHHHHHHSBC--------CCBEEEESSCCCHHHHHC-----CC-------EEECCCEEEEEGGGEEEEE----
T ss_pred CCcHHHHHHHHHHHcCC----CccCCcceEEEeCCCccccchhhccchhh-------hccccCcccccCCcccccc----
Confidence 99999999999987431 10 011278886 9999998654432211 0111111222221000000
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC 477 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~ 477 (965)
.|+++|+ + .+++++|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+ ..+..+ ..
T Consensus 170 -------~d~~~l~--~---~~~~~~v~~~~-p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~ 234 (417)
T 3g7q_A 170 -------VDFEHLH--I---GEETGMICVSR-PTNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEA 234 (417)
T ss_dssp -------CCGGGCC--C---CTTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCC
T ss_pred -------cCHHHhc--c---ccCceEEEECC-CCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-ccccccccc
Confidence 1345554 2 34567777766 689999776 6677999999999999999999999643 111111 00
Q ss_pred --cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-----ccH
Q psy8199 478 --EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-----DNI 550 (965)
Q Consensus 478 --~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-----~~~ 550 (965)
...+....+.+|||....| +++|++++++++++.+.. ..+..+++.++++++++.+.|+...- +.+
T Consensus 235 ~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 307 (417)
T 3g7q_A 235 RPLWNPNIILCMSLSKLGLPG-SRCGIIIANDKTITAIAN------MNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVI 307 (417)
T ss_dssp CCCCCTTEEEEEESGGGTCTT-SCCEEEECCHHHHHHHHH------HHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTH
T ss_pred ccCCCCCEEEEEechhccCCC-cceEEEEeCHHHHHHHHH------hhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHH
Confidence 0112222255899954445 899999999999988865 34566788899999999988863211 124
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------
Q psy8199 551 LQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------- 617 (965)
.++++++.+++.+.|++. ... ++... +..|+++++.+. ..+. ....+.+.|.++||.+.|+
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~-~~~~----~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~ 381 (417)
T 3g7q_A 308 KPFYYQRVQQTIAIIRRYLSEE-RCLIHKPEGAIFLWLWFK-DLPI----TTELLYQRLKARGVLMVPGHYFFPGLDKPW 381 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTT-TCEEECCCBSSEEEEECT-TCSS----CHHHHHHHHHHTTEECEEGGGGCTTBSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CceeeCCCcceEEEEEcC-CCCC----CHHHHHHHHHHCCEEEECchhhCCCCcccc
Confidence 455666777777777653 322 23322 345677777664 1111 1346778889999999873
Q ss_pred ---CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 ---GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 ---~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++||+++. ++++++++++++.+++.
T Consensus 382 ~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~ 411 (417)
T 3g7q_A 382 PHTHQCMRMNYVP--EPDKIEAGVKILAEEIE 411 (417)
T ss_dssp GGGGGEEEEESCS--CHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 2589999874 99999999999876654
No 141
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.87 E-value=3.9e-22 Score=228.51 Aligned_cols=344 Identities=10% Similarity=0.002 Sum_probs=218.0
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHh--hccccccCCCCcH-HHHHHHHHHHhhcCCCCCeEEEcCChhHHH--HHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLN--KLEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAV--EVA 330 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~--~~~~~~~~~~~~~-~~~~la~~l~~~~~~~~~~v~~~~sGseA~--~~A 330 (965)
.+|+..|.....+-..+|.+.+++.+++. .... ...|+.. ...+|.+.++++++.+.++|++|+|+++|+ ..+
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~ 111 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVD--CRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLI 111 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCB--TTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchh--hhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHH
Confidence 67877664421111134467776665421 1101 1123222 256777777777776778999999999997 556
Q ss_pred HHHHHHHHHhcCCC-----CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 331 LKMSFHYWYNKGFL-----NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 331 l~~a~~~~~~~g~~-----~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
+++...-+ ..|.. .+++|++.+++|+++.......+. .+..+|.... +
T Consensus 112 ~~~l~~~~-~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g------------ 164 (422)
T 3d6k_A 112 SWSYTWGN-NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF-------------EMINVPMTDE-G------------ 164 (422)
T ss_dssp HHHHHHCC-TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT-E------------
T ss_pred HHHhcCcc-cccccccccCCCCEEEEeCCccHHHHHHHHHcCC-------------EEEecCCCCC-C------------
Confidence 56553300 00000 134799999999998544333222 2233332110 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH-hcCCeEEEecccc--CCCcccc-cccc----
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN-NYNIHLIADEIAV--GCGRTGK-FFAC---- 477 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~t--g~gr~G~-~~~~---- 477 (965)
.|+++|++++.+ .++++|++.|.++|++|.+. +.+++++|.++|+ +||+++|+||+|. +|+..|. ....
T Consensus 165 ~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 241 (422)
T 3d6k_A 165 PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFA 241 (422)
T ss_dssp ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHH
T ss_pred CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHh
Confidence 267889888853 35677775553688888765 8888999999999 9999999999997 3654442 1122
Q ss_pred ---cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---c--cc
Q psy8199 478 ---EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---K--DN 549 (965)
Q Consensus 478 ---~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~--~~ 549 (965)
+..+....+.+|||.++.| +++|++++++++++.+.. .....+++.++++++++.++|+... + +.
T Consensus 242 ~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 314 (422)
T 3d6k_A 242 QAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYAS------HANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLK 314 (422)
T ss_dssp HHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred hccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHH
Confidence 1223344556899975556 899999999999888765 2344567789999999988885310 0 12
Q ss_pred HHHHHHHHHHHHHHHHHcc-cCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------
Q psy8199 550 ILQRISQDMKKITKALTSL-ITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------- 617 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------- 617 (965)
..+.++++.+++.+.|.+. ...+.+..+.+ .|+++++.+. +. ....+.+.|.++||++.|+
T Consensus 315 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~--~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~~~ 387 (422)
T 3d6k_A 315 HAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVV--PG-----TASRVVELAKEAGIALTGAGSSFPLHNDP 387 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEES--TT-----CHHHHHHHHHHTTEECCCTTTTSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECC--CC-----CHHHHHHHHHHCCeEEEcCccccCCCCCC
Confidence 2344445566666666543 33333443333 5677777774 21 1345677888999999872
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++||+++. .++++++++++++.+.+.
T Consensus 388 ~~~~iRis~~~-~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 388 NNENIRLAPSL-PPVAELEVAMDGFATCVL 416 (422)
T ss_dssp TSCEEEECCSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCC-CCHHHHHHHHHHHHHHHH
Confidence 2689999776 899999999999876543
No 142
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.87 E-value=6.9e-22 Score=229.49 Aligned_cols=353 Identities=12% Similarity=0.095 Sum_probs=234.4
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc----ccCC--CCcHHHHHHHHHHHhhcCCCCCeEEEcCCh
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV----MLSN--LTHKPVIKLSEKLSSLTQYKLGHCFYGSDG 323 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~----~~~~--~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 323 (965)
|.++..|+|.. .+|+.++.+.+++.++++..... +..+ ...+...++.++++++++...++|+|++|+
T Consensus 64 ~~~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~ 137 (465)
T 3e9k_A 64 KDENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNAL 137 (465)
T ss_dssp TTCBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCH
T ss_pred CCCCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCH
Confidence 44566788864 36777888988888877553211 1111 123445678889999988777899999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
++++..+++.+.+. | .++++|++.+++||+......+.....+..... ..+...|.+... .
T Consensus 138 t~al~~~~~~~~~~----~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~----~~v~~~~~~~~~-~--------- 198 (465)
T 3e9k_A 138 TVNLHLLMLSFFKP----T-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE----SMRMIKPREGEE-T--------- 198 (465)
T ss_dssp HHHHHHHHHHHCCC----C-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH----HEEEECCCTTCS-S---------
T ss_pred HHHHHHHHHHhccc----c-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee----eeEEEecCCCCC-c---------
Confidence 99999999877431 1 346779999999998543222111000000000 001122322111 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.|+++|+++++++.+++++|++++ ++|++|.+.+ +++|.++|++||+++|+|++|+ +|.. ...... ..
T Consensus 199 --~d~~~l~~~i~~~~~~~~lv~~~~-~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~--~~ 266 (465)
T 3e9k_A 199 --LRIEDILEVIEKEGDSIAVILFSG-VHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHD--WG 266 (465)
T ss_dssp --CCHHHHHHHHHHHGGGEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHH--HT
T ss_pred --cCHHHHHHHHHhcCCCeEEEEEeC-cccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhh--cC
Confidence 267899999976545789999999 8999999987 8999999999999999999996 4322 112222 23
Q ss_pred cceee--eccccCCCcccceeeeecHHHHHhhhccC-Cc------cccccc--C----------CCCCCHHHHHHHHHHH
Q psy8199 484 PDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKN-NI------NIFLHS--H----------SYSGNPLACCAALATL 542 (965)
Q Consensus 484 pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~------~~~~~~--~----------t~~~~~~~~aaa~a~L 542 (965)
.|+++ ++|.+.+|..++|++++++++.+.+.... ++ ..+... . ..+.+++++++..+++
T Consensus 267 ~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal 346 (465)
T 3e9k_A 267 VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASL 346 (465)
T ss_dssp CCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHH
T ss_pred CCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHH
Confidence 57775 56999655457899999998876654310 00 000000 0 1156788888889999
Q ss_pred HHHhc---ccHHHHHHHHHHHHHHHHHcccC-------CCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHH
Q psy8199 543 EIFNK---DNILQRISQDMKKITKALTSLIT-------HPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAA 607 (965)
Q Consensus 543 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~-------~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l 607 (965)
+.+.+ +.+.++.+++.+++.+.|+++.. .+++..+. ..|.++.+.+. .+ ...+.+.|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~-------~~~l~~~L 418 (465)
T 3e9k_A 347 EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VP-------NKDVFQEL 418 (465)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CT-------TCCHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CC-------HHHHHHHH
Confidence 88764 45777888888888888876411 13444332 24888888774 11 12467888
Q ss_pred HHcCcEEeecC-CEEEEeC-CcccCHHHHHHHHHhhhccccc
Q psy8199 608 LKNELLLRPIG-NTVYLMP-PYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 608 ~~~Gi~~~~~~-~~lR~~p-~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.++||++...+ +++||+| |+..+.++++++++.+.+++.+
T Consensus 419 ~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 419 EKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 89999988653 8999999 8999999999999998776543
No 143
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.87 E-value=1.8e-21 Score=220.08 Aligned_cols=318 Identities=12% Similarity=0.077 Sum_probs=219.8
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC--CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL--GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~--~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|++.+|+.+++... ......+...++.+++++.++... +++++++||++|++ +++.+. .++++
T Consensus 13 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~--------~~gd~ 79 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF----TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL--------KPNDK 79 (384)
T ss_dssp CCHHHHHHTTCCSCCT----TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC--------CTTCE
T ss_pred CCHHHHHHhhcccccc----ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc--------CCCCE
Confidence 4788888887765321 111235567889999999988666 78999999999999 887552 36788
Q ss_pred EEEEcCCccCCcccccc-ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 349 FICLQNSYHGETLGALA-VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
|++.+++||+.....+. ..| ..+..+|.+... . .|+++|++++.++ ++++|++
T Consensus 80 vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~-----------~d~~~l~~~i~~~--~~~~v~~ 133 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFKRYP------------VNVKVLRPSPGD-Y-----------VKPGEVEEEVRKS--EYKLVAL 133 (384)
T ss_dssp EEEECSSHHHHHHHHHHTTSS------------CEEEEECCSTTC-C-----------CCHHHHHHHHHHS--CEEEEEE
T ss_pred EEEecCCcchHHHHHHHHHcC------------CcEEEecCCCCC-C-----------CCHHHHHHHHHhC--CCcEEEE
Confidence 99999999985332221 111 133445543211 1 2688999999752 4788888
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMT 505 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~ 505 (965)
++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|++++ +|+++|+ .++|++++
T Consensus 134 ~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~~~ 202 (384)
T 3zrp_A 134 TH-VETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAE--EVKAE--EWNVDVYLTASQKALGSA-AGLGLLLL 202 (384)
T ss_dssp ES-EETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTS--CCCTT--TTTCSEEEEETTSTTCCC-SSEEEEEE
T ss_pred eC-CCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCc--ccccc--ccCCCEEEecCcccccCC-CceEEEEE
Confidence 88 8999998887 9999999999999999999996 3321 11122 234788765 5999876 57999999
Q ss_pred cHHHHHhh-hccCCc------cccc---------ccCCC-CCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHH
Q psy8199 506 TDKIYNSI-YYKNNI------NIFL---------HSHSY-SGNPLACCAALATLEIFNKD---NILQRISQDMKKITKAL 565 (965)
Q Consensus 506 ~~~i~~~~-~~~~~~------~~~~---------~~~t~-~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L 565 (965)
++++++.+ ...... ..+. ....+ +.++.+++++.++++.+.+. .+.++.+++.+++.+.|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (384)
T 3zrp_A 203 SPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGL 282 (384)
T ss_dssp CHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99988776 110000 0000 22223 45677777777888876543 57788888899999988
Q ss_pred HcccCCCceee--eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----CEEEEeCCcccCHHHHHHHHH
Q psy8199 566 TSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 566 ~~l~~~~~i~~--v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~lR~~p~~~~t~~~i~~~~~ 639 (965)
+++ ....+.. ....+.++.+.+. + .....+.+.|.++||.++++. +++|++++..+++++++++++
T Consensus 283 ~~~-g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~ 354 (384)
T 3zrp_A 283 EAL-GLEIVARRPESYSNTVTGVILK--V-----ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAIS 354 (384)
T ss_dssp HHT-TCCBSCSSGGGBCSSEEEEECS--S-----SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHH
T ss_pred HHC-CCeEccCcccccCccEEEEECC--C-----CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHH
Confidence 876 2221111 1123566666654 1 114468888999999999876 789999999999999999999
Q ss_pred hhhcccc
Q psy8199 640 AIFQTFN 646 (965)
Q Consensus 640 ~l~~~~~ 646 (965)
++.+.+.
T Consensus 355 ~l~~~l~ 361 (384)
T 3zrp_A 355 VIERTLR 361 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876554
No 144
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.87 E-value=3.6e-21 Score=216.03 Aligned_cols=331 Identities=15% Similarity=0.174 Sum_probs=220.9
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~ 333 (965)
++|+..| +++ .+|+|.+|+.+++. +.. ..+.++...++.++++++++.. .+++++++||++|++.+++.
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 5777666 343 78999999887531 110 0111256678888888888621 24799999999999999998
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
++. ++++|+++++.||+....... ......+..+|.+.. +. .|+++|++
T Consensus 76 ~~~--------~gd~vi~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~-~~-----------~d~~~l~~ 124 (366)
T 1m32_A 76 ALG--------PQDKVLIVSNGAYGARMVEMA-----------GLMGIAHHAYDCGEV-AR-----------PDVQAIDA 124 (366)
T ss_dssp SCC--------TTCCEEEEESSHHHHHHHHHH-----------HHHTCCEEEEECCTT-SC-----------CCHHHHHH
T ss_pred hcC--------CCCeEEEEeCCCccHHHHHHH-----------HHhCCceEEEeCCCC-CC-----------CCHHHHHH
Confidence 742 456788888888875321111 001113344444321 11 36889999
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--ecc
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSK 491 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK 491 (965)
++++.. ++.+|++.. +++++|.+.+ +++|.++|++||+++|+||+|+ +|... +... ...+|+++ ++|
T Consensus 125 ~l~~~~-~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~~K 193 (366)
T 1m32_A 125 ILNADP-TISHIAMVH-SETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIA--ALHIDYLISSANK 193 (366)
T ss_dssp HHHHCT-TCCEEEEES-EETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTT--TTTCSEEEEESSS
T ss_pred HHhcCC-CeEEEEEec-ccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccc--ccCccEEEecCcc
Confidence 997642 344454444 4788998887 8999999999999999999997 54432 1222 23478874 679
Q ss_pred ccCCCcccceeeeecHHHHHhhhccCCccccc--------------ccCCCCCCHHHHHHHHHHHHHHhcc----cHHHH
Q psy8199 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFL--------------HSHSYSGNPLACCAALATLEIFNKD----NILQR 553 (965)
Q Consensus 492 ~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~--------------~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~ 553 (965)
+++|+ .++|++++++++++.+... ...+. ....++.++.+++++.++|+.+.+. ...++
T Consensus 194 ~~~~~-~g~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~ 270 (366)
T 1m32_A 194 CIQGV-PGFAFVIAREQKLAACKGH--SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQR 270 (366)
T ss_dssp TTCCC-SSEEEEEEEHHHHTTCTTC--CSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCC-CceEEEEECHHHHHhhcCC--CCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHH
Confidence 98776 4789999999988776541 01110 0113678899999999999877543 36788
Q ss_pred HHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcc
Q psy8199 554 ISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYI 628 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~ 628 (965)
++++.+++.+.|+++ ....+... ...|.++.+.+. .. . ......+.+.|.++||.+.++ .+++|++++..
T Consensus 271 ~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~ 345 (366)
T 1m32_A 271 YQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSP-ED--P-QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGE 345 (366)
T ss_dssp HHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC-CC--T-TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcC-cc--C-CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCC
Confidence 888899999988775 22211111 123557777764 10 0 011446788899999999874 36999999998
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
+++++++++++++.+.+
T Consensus 346 ~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 346 VYAADITALLTAIRTAM 362 (366)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 145
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.86 E-value=8.3e-21 Score=212.27 Aligned_cols=323 Identities=14% Similarity=0.132 Sum_probs=208.3
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
...+|||.++ +.++.+|++++|+.+++.. + .......+...+++++++++++ ....++|++||++|++.|++
T Consensus 6 ~~~~id~~~~----~~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 6 RPPALGFSSD----NIAGASPEVAQALVKHSSG--Q-AGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCCCBCSCG----GGCCCCHHHHHHHHHTTSS--C-CCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHH
T ss_pred CCceEeeccC----CccCCCHHHHHHHHhhccC--c-ccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHH
Confidence 3568999875 3467899999999988632 1 1122346778899999999997 43458999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCcccc--cccc--CCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGA--LAVT--NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
+++. +++.|++.+++ |+.+... +... | ..+..+|.+ .+. .|+
T Consensus 78 ~~~~--------~gd~vi~~~~~-~~~~~~~~~~~~~~~g------------~~~~~v~~~--~~~-----------~d~ 123 (356)
T 1v72_A 78 AMTP--------PWGNIYCHPAS-HINNDECGAPEFFSNG------------AKLMTVDGP--AAK-----------LDI 123 (356)
T ss_dssp TSCC--------TTEEEEECTTS-HHHHSSTTHHHHHTTS------------CEEEECCCG--GGC-----------CCH
T ss_pred HhcC--------CCCEEEEcCcc-chhhhhchHHHHHhCC------------cEEEEecCC--CCe-----------EcH
Confidence 7642 45677776654 4433322 2211 1 122333321 111 267
Q ss_pred HHHHH-HHHhC----CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc--ccccccccccC
Q psy8199 409 FDLEI-LLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAE 481 (965)
Q Consensus 409 ~~le~-~l~~~----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G~~~~~~~~~ 481 (965)
++|++ ++++. ..++++|+++| ++ ++|.+ ++.+++++|.++|++||+++|+||+|..++. .|. ....++
T Consensus 124 ~~l~~~~i~~~~~~~~~~~~~v~~~~-~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~ 198 (356)
T 1v72_A 124 VRLRERTREKVGDVHTTQPACVSITQ-AT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--SPAEMT 198 (356)
T ss_dssp HHHHHHTTSSTTCTTSCEEEEEEEES-SC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--CTTTTT
T ss_pred HHHHHHhhhcchhhccCCceEEEEEc-CC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--CHHHhh
Confidence 88888 77531 23688999998 66 47865 5789999999999999999999999974311 111 111122
Q ss_pred --CCcceee--eccccCCCcccce--eeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHH
Q psy8199 482 --IWPDFLC--LSKGITGGYLPLS--LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQ 552 (965)
Q Consensus 482 --~~pDivt--~sK~l~gG~~pig--~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~ 552 (965)
...|+++ ++|+ | +|+| ++++++++++.+..- ..+.++.... ++.++.++++.++++ +..+
T Consensus 199 ~~~~~d~~~~s~sK~--g--~~~G~g~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 267 (356)
T 1v72_A 199 WKAGVDALSFGATKN--G--VLAAEAIVLFNTSLATEMSYR-----RKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNAR 267 (356)
T ss_dssp GGGTCCEEEECCGGG--T--CSSCEEEEESSGGGHHHHHHH-----HHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHH
T ss_pred hhhcCCEEEEecccC--C--CcCccEEEEECHHHHhhHHHH-----hhccCchhhh--HHHHHHHHHHHHHhhhHHHHHH
Confidence 2456665 5676 3 3777 666788888766431 0111222221 223334455555443 2456
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcc
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYI 628 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~ 628 (965)
+.+++.+++.+.|+++ +++..+ +..+.++.+.+. ..+.+.|.++||.+.++ .+++|+++++.
T Consensus 268 ~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~ 333 (356)
T 1v72_A 268 KANAAAQRLAQGLEGL---GGVEVLGGTEANILFCRLD-----------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFA 333 (356)
T ss_dssp HHHHHHHHHHHHHTTC---TTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTT
T ss_pred HHHHHHHHHHHHHhhC---CCcEEccCCCccEEEEEcC-----------HHHHHHHHhcCeEEeccccCCCeEEEEecCC
Confidence 6677778888777654 455432 334555555542 15777888999999864 47999999999
Q ss_pred cCHHHHHHHHHhhhccccc
Q psy8199 629 LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~ 647 (965)
+++++++++++++.+.+.+
T Consensus 334 ~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 334 TTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999876543
No 146
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.86 E-value=6.8e-21 Score=219.94 Aligned_cols=307 Identities=11% Similarity=0.032 Sum_probs=196.7
Q ss_pred cHHHHHHHHHHHhhc--CCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce--------------EEEEE-cCCccC
Q psy8199 296 HKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK--------------KFICL-QNSYHG 358 (965)
Q Consensus 296 ~~~~~~la~~l~~~~--~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~--------------~vi~~-~~~yHg 358 (965)
.+.+..+++.+.+.. +.+.++|+||+||++|++.+++.+.. +++ +||+. +++|++
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG--------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE--------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC--------CCccccccccccccccceEEEeCCCCccc
Confidence 344555665555443 34567999999999999999987742 222 56664 889998
Q ss_pred CccccccccCCcCccchhcccCCCeeEecCCCCC----CCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccC
Q psy8199 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR----NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA 434 (965)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~ 434 (965)
+......... +......+..++..... .. .|+++|++++++..+++++|++.. ++|+
T Consensus 158 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~-----------~d~~~l~~~l~~~~~~~~~v~i~~-p~np 218 (444)
T 3if2_A 158 YSDVHVEGQH-------FAAVLPHIDEVTHDGEEGFFKYR-----------VDFEALENLPALKEGRIGAICCSR-PTNP 218 (444)
T ss_dssp GTTCCSSSCC-------EEECCCEEEEEEETTEEEEEEEE-----------CCHHHHHTCHHHHTTCEEEEEEES-SCTT
T ss_pred hhhcccccch-------hhccCceEEecccccccCccccC-----------CCHHHHHHHHHhcCCCceEEEeCC-CCCC
Confidence 8543321110 11111122233321100 01 267888887543234566666665 5889
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-c--cccCCCcceeeeccccCCCcccceeeeecHHHHH
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-C--EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN 511 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~--~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~ 511 (965)
+|.+. +.+.+++|.++|++||+++|+||+|..+ ..+..+. . ...+...++.+|||.+..| +++|++++++++++
T Consensus 219 tG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~l~~ 295 (444)
T 3if2_A 219 TGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG-MRTGIIVADAKVIE 295 (444)
T ss_dssp TCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-GCCEEEECCHHHHH
T ss_pred CCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-CceEEEEECHHHHH
Confidence 99866 6777999999999999999999999643 1111111 0 1123334456899975556 89999999999998
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHcc-cCCCceee-eeceeEEE
Q psy8199 512 SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-----DNILQRISQDMKKITKALTSL-ITHPKIIN-FRQKGMIW 584 (965)
Q Consensus 512 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-----~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~-v~g~G~~~ 584 (965)
.+.. ..+..+++.++++++++.+.|+.... +.+.+.++++.+.+.+.|.+. ... ++.. .+..|+++
T Consensus 296 ~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~ 368 (444)
T 3if2_A 296 AVSA------MNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY-PLMIHKPEGAIFL 368 (444)
T ss_dssp HHHH------HHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS-SEEEECCCBSSEE
T ss_pred HHHH------HHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CceEecCCccEEE
Confidence 8865 33456678899999999888864221 124455666667777777653 222 2332 23457777
Q ss_pred EEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---------------CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 585 AFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---------------NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 585 ~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---------------~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+. ..+. ....+.+.|.++||.+.|+. +++||+++. ++++++++++++.+.+.
T Consensus 369 ~~~~~-~~~~----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 369 WLWFK-DLPI----STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp EEEET-TCSS----CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH
T ss_pred EEEcC-CCCC----CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH
Confidence 77774 1111 13467788899999998731 479999876 99999999999876543
No 147
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.86 E-value=9.7e-22 Score=228.60 Aligned_cols=357 Identities=12% Similarity=0.081 Sum_probs=208.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|+.|||+.+++++ |+|.+|+.+++.... ......+...+|+++++++++ .++++|++||++|++.|+
T Consensus 39 ~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp GGGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHH
T ss_pred CCCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHH
Confidence 47789999887653 889999988876431 122345667899999999984 589999999999999999
Q ss_pred HHHHHH-HHhcCCCCceEEEEEcCCccCCccccccc-cCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 332 KMSFHY-WYNKGFLNKKKFICLQNSYHGETLGALAV-TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 332 ~~a~~~-~~~~g~~~~~~vi~~~~~yHg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++++.. +..+|.+++++|++. .||+.+...... .+..... .....+.+.....+. ....|++
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------~~~~d~~ 170 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN--------VYIKEAFDTGVRYDF------KGNFDLE 170 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE--------CBCTTTTCTTSCCTT------TTCBCHH
T ss_pred HHHhccccccCCCCccceEEec--ccccccchhhhhccCcceee--------ccccccccCCCCCCc------cCCcCHH
Confidence 998763 111132211556654 588764332221 1110000 000000000000000 0002789
Q ss_pred HHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----------CCcccc---cc
Q psy8199 410 DLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----------CGRTGK---FF 475 (965)
Q Consensus 410 ~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~---~~ 475 (965)
+|++++++.. +++++|+++| ++|++|..+++.+++++|+++|++||++||+|+++.. .+..|. .+
T Consensus 171 ~Le~~i~~~~~~~~~~vi~~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~ 249 (467)
T 2oqx_A 171 GLERGIEEVGPNNVPYIVATI-TSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQI 249 (467)
T ss_dssp HHHHHHHHHCGGGCCCEEEES-SBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHH
T ss_pred HHHHHHHhcCCCceeEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHH
Confidence 9999997532 4688999999 8888766677899999999999999999999965532 122232 11
Q ss_pred cccccCCCccee--eeccccCCCccccee-eeecHH-HHHhhhccCCcc-cccccCCCCCCHHHHHHHH-HHHHHHhccc
Q psy8199 476 ACEHAEIWPDFL--CLSKGITGGYLPLSL-VMTTDK-IYNSIYYKNNIN-IFLHSHSYSGNPLACCAAL-ATLEIFNKDN 549 (965)
Q Consensus 476 ~~~~~~~~pDiv--t~sK~l~gG~~pig~-v~~~~~-i~~~~~~~~~~~-~~~~~~t~~~~~~~~aaa~-a~L~~~~~~~ 549 (965)
..+.+ ..+|++ +++|+++ .|+|+ ++++++ +++.+..-.... ......++++.+..+.+++ ..|+...+++
T Consensus 250 ~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~ 325 (467)
T 2oqx_A 250 TRETY-KYADMLAMSAKKDAM---VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD 325 (467)
T ss_dssp HHHHG-GGCSEEEEESSSTTC---CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhh-ccCCeEEEecccccC---CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHH
Confidence 10000 114554 5678774 36554 556656 443332100000 0001123333333333233 2233222233
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeec--CccchhhH-HHHHHHHH-HHcCcEEeecC-------
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE--DPEQIETF-SKKFFVAA-LKNELLLRPIG------- 618 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~--~~~~~~~~-~~~~~~~l-~~~Gi~~~~~~------- 618 (965)
..++..++++++.+.|+++ ..+.+ +..|.++.+.+. . .......+ ...+.+.| .++||.+.|.+
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~ 400 (467)
T 2oqx_A 326 WLAYRIAQVQYLVDGLEEI-GVVCQ---QAGGHAAFVDAG-KLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD 400 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEE---EECSSCEEEEHH-HHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeee---cCCceEEEEech-hhcccCCcccccHHHHHHHHHHhcCceeccccccccccc
Confidence 5666778889999999876 33333 233455555542 1 11111223 45677888 89999987732
Q ss_pred -----------CEEEEeCCcc-cCHHHHHHHHHhhhcccc
Q psy8199 619 -----------NTVYLMPPYI-LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 -----------~~lR~~p~~~-~t~~~i~~~~~~l~~~~~ 646 (965)
+++||+++.. +++++++++++++.+.+.
T Consensus 401 ~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~ 440 (467)
T 2oqx_A 401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp TTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999 999999999999876543
No 148
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.86 E-value=2.6e-21 Score=219.49 Aligned_cols=319 Identities=13% Similarity=0.125 Sum_probs=216.7
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|++.+|+.+++.. +. .....+...++++++++.++...+ .+++++||++|++.+++.+. .++++|
T Consensus 34 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~v 101 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HM--QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDSF 101 (393)
T ss_dssp CCHHHHHHTTCCCCC--TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCEE
T ss_pred CCHHHHHHhcccccC--cc--cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCEE
Confidence 578898888764322 11 111245667889999999875544 59999999999999999773 367889
Q ss_pred EEEcCCccCCcccc-ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 350 ICLQNSYHGETLGA-LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 350 i~~~~~yHg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
++..++|||..... ....| ..+..+|.+.... .|+++|++++++. ++++|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~------------~d~~~l~~~i~~~--~~~~v~~~ 155 (393)
T 3kgw_A 102 LTGTNGIWGMRAAEIADRIG------------ARVHQMIKKPGEH------------YTLQEVEEGLAQH--KPVLLFLV 155 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCC------------CCHHHHHHHHHHH--CCSEEEEE
T ss_pred EEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCC------------CCHHHHHHHHhhC--CCcEEEEe
Confidence 99988887642111 11111 1234444432111 3788999998752 45677888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|+++|++||+++|+||+|+ +| +..+..+.+ .+|++++| |+++|+ .++|+++++
T Consensus 156 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~--~~d~~~~s~sK~~~~~-~g~g~~~~~ 224 (393)
T 3kgw_A 156 H-GESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQ--GIDIMYSSSQKVLNAP-PGISLISFN 224 (393)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT--TSCCCTTTT--TCCEEEEESSSTTCCC-SSCEEEEEC
T ss_pred c-cCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc--Ccccchhhc--CCCEEEecCcccccCC-CceeEEEEC
Confidence 8 7999998876 8899999999999999999997 43 222333333 35777655 999776 579999999
Q ss_pred HHHHHhhhccC-Ccccc----------------cccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Q psy8199 507 DKIYNSIYYKN-NINIF----------------LHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 566 (965)
Q Consensus 507 ~~i~~~~~~~~-~~~~~----------------~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~ 566 (965)
+++++.+.... ....+ ....+++.++.+++++.++++.+.+ ++..++++++++++.+.|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 304 (393)
T 3kgw_A 225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQ 304 (393)
T ss_dssp HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988875411 00000 0112345688888888899987655 4567888889999999998
Q ss_pred cccCCCce-ee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC-CcccCHHHHHHH
Q psy8199 567 SLITHPKI-IN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP-PYILNKNEIQHM 637 (965)
Q Consensus 567 ~l~~~~~i-~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p-~~~~t~~~i~~~ 637 (965)
++ ....+ .. ....+.+..+.+. ++ ....++.+.|.++ ||++.++ ++++|+++ ++..++++++++
T Consensus 305 ~~-g~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~ 377 (393)
T 3kgw_A 305 EM-GLKFFVKDPEIRLPTITTVTVP--AG----YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRV 377 (393)
T ss_dssp HT-TCCBSSSSGGGBCSSEEEEECC--TT----BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHH
T ss_pred Hc-CCeeccCChhhcCCeEEEEeCC--CC----CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHH
Confidence 76 22111 11 1222455556653 11 1134677888887 9999873 37999998 777899999999
Q ss_pred HHhhhccc
Q psy8199 638 TSAIFQTF 645 (965)
Q Consensus 638 ~~~l~~~~ 645 (965)
++++.+.+
T Consensus 378 ~~~l~~~l 385 (393)
T 3kgw_A 378 AEALREAL 385 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 149
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.86 E-value=5e-21 Score=215.87 Aligned_cols=316 Identities=9% Similarity=0.068 Sum_probs=205.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-e-EEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-H-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~-v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|+|++|+.+++.. +. .....+...++++++++.++...+ + +++++||++|++.+++.+. .++++
T Consensus 30 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd~ 97 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKDK 97 (376)
T ss_dssp CCHHHHHHHTSCCCC--CS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTCC
T ss_pred CcHHHHHHhcCCCCC--CC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCCe
Confidence 478888888765532 11 111235667888999998875432 4 4559999999999998774 25688
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
|++.+++||+........ .....+..++.+.... .|+++|++++. +++++|+++
T Consensus 98 vi~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~~~~~~------------~d~~~l~~~~~---~~~~~v~~~ 151 (376)
T 3f0h_A 98 VLVIDGGSFGHRFVQLCE-----------IHEIPYVALKLEHGKK------------LTKEKLYEYDN---QNFTGLLVN 151 (376)
T ss_dssp EEEEESSHHHHHHHHHHH-----------HTTCCEEEEECCTTCC------------CCHHHHHTTTT---SCCCEEEEE
T ss_pred EEEEeCChhhHHHHHHHH-----------HcCCceEEEeCCCCCC------------CCHHHHHHhhc---cCceEEEEe
Confidence 999998888853221110 0112344444432211 26778877653 456778888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHH
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~ 508 (965)
+ ++|++|.+.+ +++|+++|++||+++|+||+|+++++. +..+.+++...+.+++|+++++ .++|+++++++
T Consensus 152 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~ 222 (376)
T 3f0h_A 152 V-DETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPR 222 (376)
T ss_dssp S-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHH
T ss_pred c-ccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHH
Confidence 7 7999999887 999999999999999999999865432 3344445433344567999865 57899999999
Q ss_pred HHHhhhccCCcccc-----------c-ccCCCCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 509 IYNSIYYKNNINIF-----------L-HSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 509 i~~~~~~~~~~~~~-----------~-~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
+++.+..... ..+ . .+..++.+..+++++.++++.+.+. ...++.+++.+++.+.|+++
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 297 (376)
T 3f0h_A 223 GVERVEKSKV-RTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL---- 297 (376)
T ss_dssp HHHHHHTCCC-CCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS----
T ss_pred HHHHhhcCCC-CceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----
Confidence 9887754110 010 0 1223445555667788888877654 24555556666666666543
Q ss_pred ceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 573 KIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 573 ~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++.... ..+.++.+... . .....+.+.|.++ ||.++++ ++++|++++..+++++++++++++.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~ 370 (376)
T 3f0h_A 298 PFELVSESPANGVTSVHPT--T-----ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDL 370 (376)
T ss_dssp SEEECCSSBBTTEEEEEES--S-----SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCccCccccCceEEEEeCC--C-----CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222211 12233333321 1 1144677888888 9999874 268999999999999999999998764
Q ss_pred c
Q psy8199 645 F 645 (965)
Q Consensus 645 ~ 645 (965)
+
T Consensus 371 l 371 (376)
T 3f0h_A 371 Q 371 (376)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.86 E-value=5.7e-21 Score=217.02 Aligned_cols=309 Identities=12% Similarity=0.083 Sum_probs=205.6
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
.+++.+++..+......+....+.++...+++++++++++ .+++++++||++|++.+++.+. .++++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~ 108 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER--GEAGLATASGISAITTTLLTLC--------QQGDHIVS 108 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEE
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEE
Confidence 4555555542222222333445678889999999999996 3488888899999999999773 25688999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.++.||+......... ......+..+|. .|+++|+++++ +++++|++++ +
T Consensus 109 ~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~ 158 (398)
T 2rfv_A 109 ASAIYGCTHAFLSHSM---------PKFGINVRFVDA-----------------AKPEEIRAAMR---PETKVVYIET-P 158 (398)
T ss_dssp ESSSCHHHHHHHHTHH---------HHTTCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-S
T ss_pred cCCCcccHHHHHHHHH---------HHcCCEEEEeCC-----------------CCHHHHHHhcC---CCCeEEEEEC-C
Confidence 9999988643221100 011112344443 26788888875 4678999999 8
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce--eeeccccCCCcccc-eeeeecHH
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF--LCLSKGITGGYLPL-SLVMTTDK 508 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi--vt~sK~l~gG~~pi-g~v~~~~~ 508 (965)
+|++|.+.+ +++|.++|++||+++|+||+|..+ ..+... .++ +|+ .+++|.++++++|+ |+++++++
T Consensus 159 ~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~-~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~ 228 (398)
T 2rfv_A 159 ANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP-YCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQE 228 (398)
T ss_dssp BTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHH
Confidence 999999886 999999999999999999999733 222221 223 566 47899997754788 99999998
Q ss_pred HHH-hhhccCCcccccccC-CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCCCcee
Q psy8199 509 IYN-SIYYKNNINIFLHSH-SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKII 575 (965)
Q Consensus 509 i~~-~~~~~~~~~~~~~~~-t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~i~ 575 (965)
+++ .+.. +.+.. +.+.++++++++.++|+.+. ...++..++.+++.+.|++. ..+|++.
T Consensus 229 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~ 300 (398)
T 2rfv_A 229 FIDQARFV------GLKDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300 (398)
T ss_dssp HHHHHHHT------HHHHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred HHHHHHHH------HHHhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 876 4432 23334 56788999999999996542 23455666677777777642 1223322
Q ss_pred ee----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------------------------CCEEEE
Q psy8199 576 NF----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------------GNTVYL 623 (965)
Q Consensus 576 ~v----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------~~~lR~ 623 (965)
.. ++.|.++.+++. +. ......+.+.+...|+.+.++ .+.+||
T Consensus 301 ~~~~~~~~~g~~~~~~~~--~~---~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRl 375 (398)
T 2rfv_A 301 LGQRQMSLPGGIISFEIA--GG---LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRL 375 (398)
T ss_dssp HHHHHCSSCCSEEEEEET--TH---HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEE
T ss_pred HHHhhCCCCceEEEEEEc--CC---HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEE
Confidence 11 356889998874 10 112333444444445544322 379999
Q ss_pred eCCcccCHHHHHHHHHhhhc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++...++++++.+.+++.+
T Consensus 376 s~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 376 SVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp ECCSSCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHh
Confidence 99999999999998887754
No 151
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.86 E-value=5.8e-21 Score=217.86 Aligned_cols=329 Identities=11% Similarity=0.049 Sum_probs=214.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-c-cccccCCC--CcH---HHHHHH-HHHHhhcCCCCCeEEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-L-EHVMLSNL--THK---PVIKLS-EKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~-~~~~~~~~--~~~---~~~~la-~~l~~~~~~~~~~v~~~~sGse 325 (965)
++|+|+.++... + +|+|.+|+.+++.+ . ..+....+ ..+ ..++++ +++++.++.. ...++++||++
T Consensus 23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~-~~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA-WANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC-cceEEecchHH
Confidence 578999888543 3 89999999998864 2 22211111 122 233333 4788888643 23356677999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCc--cccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET--LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.+++++. .++++|++.+++|+++. ..++...|.. .....++.......
T Consensus 97 a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~--------- 149 (407)
T 2dkj_A 97 ANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRPDTEL--------- 149 (407)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCTTTSS---------
T ss_pred HHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCcccCc---------
Confidence 9999999873 35688999999998873 1222221110 01111211100111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC-CCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG-CGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~ 481 (965)
.|+++|++++++. ++++|++ +| .+ |...+ +++|.++|++||+++|+||+|++ +...|.... ..+
T Consensus 150 --~d~~~l~~~l~~~--~~~~v~~~~p-~~---~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~ 215 (407)
T 2dkj_A 150 --IDLEEVRRLALEH--RPKVIVAGAS-AY---PRFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP 215 (407)
T ss_dssp --CCHHHHHHHHHHH--CCSEEEECCS-SC---CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT
T ss_pred --cCHHHHHHHHhhc--CCeEEEEecc-cc---CCCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc
Confidence 3688899888642 3455555 67 33 24443 89999999999999999999985 433343221 112
Q ss_pred CCccee--eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHH
Q psy8199 482 IWPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRIS 555 (965)
Q Consensus 482 ~~pDiv--t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~ 555 (965)
.+|++ ++||+++|+ ++|+++++ +++++.+... ..++.+.+.++..++++.++|+.+.. ++..++++
T Consensus 216 -~~di~~~s~sK~l~g~--~~G~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 287 (407)
T 2dkj_A 216 -YAHVVTSTTHKTLRGP--RGGLILSNDPELGKRIDKL-----IFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVV 287 (407)
T ss_dssp -TCSEEEEESSGGGCCC--SCEEEEESCHHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred -cccEEEEeccccCCCC--CceEEEECCHHHHHHHHhh-----hcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 26887 789999864 67999999 7888877541 11334455677778788888887543 45778888
Q ss_pred HHHHHHHHHHHcccCCCceeee--eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEE
Q psy8199 556 QDMKKITKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVY 622 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v--~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR 622 (965)
++.+++.+.|+++ ++..+ ++.|.++.+.+. ..+ .....+.+.|.++||++.++ .+.+|
T Consensus 288 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iR 358 (407)
T 2dkj_A 288 ENAKRLAEELARR----GYRIVTGGTDNHLFLVDLR-PKG----LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIR 358 (407)
T ss_dssp HHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GGT----CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEE
T ss_pred HHHHHHHHHHHhC----CceeecCCCCceEEEEECc-ccC----CCHHHHHHHHHHcCceecCCcCccccccccCCCcee
Confidence 8889998888775 23322 356888888774 110 01346778889999999863 35799
Q ss_pred EeCCcc----cCHHHHHHHHHhhhcccc
Q psy8199 623 LMPPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 623 ~~p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
++++.. +++++++++++++.+.+.
T Consensus 359 is~~~~~~~~~~~~~i~~~~~~l~~~~~ 386 (407)
T 2dkj_A 359 IGTPAITTRGFTPEEMPLVAELIDRALL 386 (407)
T ss_dssp EECHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred eecccccccCCCHHHHHHHHHHHHHHHh
Confidence 998763 899999999999876543
No 152
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.86 E-value=2.2e-20 Score=216.45 Aligned_cols=348 Identities=14% Similarity=0.112 Sum_probs=212.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|+.|+|+.++.++.++ .+++.+++. .. . ......+...+|++.++++++ .+++++++||++|++.|+
T Consensus 40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~-~--~~y~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MG-D--EAYAGSENFYHLERTVQELFG--FKHIVPTHQGRGAENLLS 107 (456)
T ss_dssp GGGCSEECSCSSSCCCC---CHHHHHHHT----TC-C--CCSSSCHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHH
T ss_pred cccceeeeccccCCccC---CHHHHHHhh----cc-h--hhcccChhHHHHHHHHHHHhC--CCcEEEeCCcHHHHHHHH
Confidence 57789999877554322 466666654 21 1 112246678899999999984 569999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH-HHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIFD 410 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~ 410 (965)
+.+.. +++ ++.+++||+.+..+....|.. ...++...... + .+...+. ..|+++
T Consensus 108 ~~l~~--------~gd--i~~~~~~~~~~~~~~~~~G~~------------~~~v~~~~~~~-~--~~~~~~~~~~d~~~ 162 (456)
T 2ez2_A 108 QLAIK--------PGQ--YVAGNMYFTTTRYHQEKNGAV------------FVDIVRDEAHD-A--GLNIAFKGDIDLKK 162 (456)
T ss_dssp HHHCC--------TTC--EEEESSCCHHHHHHHHHTTCE------------EEECBCGGGGC-T--TCCCSCTTCBCHHH
T ss_pred HHhCC--------CCC--EeccccccchhHHHHHHcCCE------------EEEeccccccc-c--cccccccCCCCHHH
Confidence 87732 233 788899988755444443311 12222210000 0 0000000 026889
Q ss_pred HHHHHHhCC-CcEEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----------CCccccccc--
Q psy8199 411 LEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----------CGRTGKFFA-- 476 (965)
Q Consensus 411 le~~l~~~~-~~~aaii~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~~~~-- 476 (965)
|++++.+.. ..+++|++++ ++| ++|. ..+.+++++|.++|++||+++|+||+|+. +++.|..+.
T Consensus 163 l~~~i~~~t~~~~~~v~l~~-p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~ 240 (456)
T 2ez2_A 163 LQKLIDEKGAENIAYICLAV-TVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240 (456)
T ss_dssp HHHHHHHHCGGGEEEEEEES-SBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHH
T ss_pred HHHHHHhccccceeEEEEec-cCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhh
Confidence 999887543 3468888885 455 7885 55889999999999999999999999984 334454221
Q ss_pred ccccCCCcceeeec-cccCCCcccceeeee-cHHHHHhhhccCCcccccccCCCCC-CHHHHHH-HHHHHHHHhcccHHH
Q psy8199 477 CEHAEIWPDFLCLS-KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSG-NPLACCA-ALATLEIFNKDNILQ 552 (965)
Q Consensus 477 ~~~~~~~pDivt~s-K~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aa-a~a~L~~~~~~~~~~ 552 (965)
.+..+..+|++++| |.+++.. ..|++++ ++++++.+..- ........++.+ ++..+++ +.+.++.+. +++.+
T Consensus 241 ~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~ 316 (456)
T 2ez2_A 241 VHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKEL--VVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIE 316 (456)
T ss_dssp HHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHH--HHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHH
T ss_pred hhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHH--HhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHH
Confidence 01223447988874 6665531 3677777 57887765430 000001122322 4444444 555555443 45677
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEee-cCccchhhH-HHHHHHHH-HHcCcEEeec------------
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII-EDPEQIETF-SKKFFVAA-LKNELLLRPI------------ 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~-~~~~~~~~~-~~~~~~~l-~~~Gi~~~~~------------ 617 (965)
+.+++.+++.+.|++. ..+.+. +..|.++.+.+.. ..+.....+ ...+...| .++||.+.+.
T Consensus 317 ~~~~~~~~l~~~L~~~-g~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g 393 (456)
T 2ez2_A 317 HRVKQVRYLGDKLKAA-GVPIVE--PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTG 393 (456)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTC
T ss_pred HHHHHHHHHHHHHhcC-CCcccc--CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcccc
Confidence 7788888888888764 222111 2235666665420 011112233 44556677 5889976431
Q ss_pred ------CCEEEEeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 618 ------GNTVYLMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ------~~~lR~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
.+.+||++++. +++++++++++++.+.+
T Consensus 394 ~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l 428 (456)
T 2ez2_A 394 EHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp SBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 26899999987 89999999999887654
No 153
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.86 E-value=8.3e-21 Score=216.82 Aligned_cols=320 Identities=12% Similarity=0.071 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCe-EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~-v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|++.+|+.+++. .++ .....+...+++++++++++...+. +++++||++|++.+++.+. .++++|
T Consensus 24 ~~~~v~~a~~~~~~--~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~V 91 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQY--DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDKV 91 (411)
T ss_dssp CCHHHHHHHTSCCC--CTT--CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEE
T ss_pred CCHHHHHHhhcccc--ccc--cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCEE
Confidence 47888888876531 111 1112355688899999998766555 7899999999999999873 367899
Q ss_pred EEEcCCccCCccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 350 ICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 350 i~~~~~yHg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
++.+++||+.... ..... ...+..+|.+.... .|+++|++++++. ++++|+++
T Consensus 92 l~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~------------~d~~~l~~~i~~~--~~~~v~~~ 145 (411)
T 3nnk_A 92 LVPVFGRFGHLLCEIARRC------------RAEVHTIEVPWGEV------------FTPDQVEDAVKRI--RPRLLLTV 145 (411)
T ss_dssp EEEECSHHHHHHHHHHHHT------------TCEEEEEECCTTCC------------CCHHHHHHHHHHH--CCSEEEEE
T ss_pred EEecCCchHHHHHHHHHHc------------CCeEEEEecCCCCC------------CCHHHHHHHHhhC--CCeEEEEe
Confidence 9999999884211 11111 11344455432211 2688999998742 46778888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|.++|++||+++|+||+++ +|.. .+....++ +|+++ ++|+++|+ .++|+++++
T Consensus 146 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~ 214 (411)
T 3nnk_A 146 Q-GDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN--PLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLS 214 (411)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEEC
T ss_pred C-CCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhccC--CcEEEecCccccCCC-CceEEEEEC
Confidence 8 7999999877 8899999999999999999986 4321 22333333 56665 56887776 589999999
Q ss_pred HHHHHhhhccCCcccccc------------------------------cCCCCCCHHHHHHHHHHHHHHhcc---cHHHH
Q psy8199 507 DKIYNSIYYKNNINIFLH------------------------------SHSYSGNPLACCAALATLEIFNKD---NILQR 553 (965)
Q Consensus 507 ~~i~~~~~~~~~~~~~~~------------------------------~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~ 553 (965)
+++++.+.......+..+ ....+.|..+++++.++++.+.+. ...++
T Consensus 215 ~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 294 (411)
T 3nnk_A 215 ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIAR 294 (411)
T ss_dssp HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999887754110000011 122345788888888888876543 56788
Q ss_pred HHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC-
Q psy8199 554 ISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP- 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p- 625 (965)
.+++.+++.+.|+++ ....+. .....+.++.+.+. ++. ....+.+.|.++ ||.++++ ++++|+++
T Consensus 295 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~ 367 (411)
T 3nnk_A 295 HKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIP--QGI----NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTM 367 (411)
T ss_dssp HHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECC--TTC----CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECC--CCC----CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCc
Confidence 888899999998875 211111 11224566666653 111 134677788776 9999873 36999998
Q ss_pred CcccCHHHHHHHHHhhhcccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++..++++++++++++.+.+.
T Consensus 368 ~~~~~~~~i~~~~~~l~~~l~ 388 (411)
T 3nnk_A 368 GYNARKDCVMTTLSALEAVLN 388 (411)
T ss_dssp GGGCSHHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHHH
Confidence 878899999999999876543
No 154
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.86 E-value=1.2e-20 Score=214.04 Aligned_cols=333 Identities=11% Similarity=0.045 Sum_probs=222.7
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
...|+|..+. ++.+|++.+|+.+++.. +. .....+...++.+.++++++.+.+++++++||++|+..+++
T Consensus 8 ~~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 8 DPVITLTAGP------VNAYPEVLRGLGRTVLY--DY--DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp CCSEECSSSC------CCCCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHH
T ss_pred CcceeecCCC------cCCCHHHHHHHhccccc--cc--cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHH
Confidence 3478886542 45789999999876653 11 11123456789999999997666899999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.+. .++++|++.+++||+.....+. ......+..+|.+... . .|+++|+
T Consensus 78 ~~~--------~~gd~Vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~-~-----------~d~~~l~ 126 (392)
T 2z9v_A 78 SLI--------SPDDVVLNLASGVYGKGFGYWA-----------KRYSPHLLEIEVPYNE-A-----------IDPQAVA 126 (392)
T ss_dssp HHC--------CTTCCEEEEESSHHHHHHHHHH-----------HHHCSCEEEEECCTTS-C-----------CCHHHHH
T ss_pred Hhc--------CCCCEEEEecCCcccHHHHHHH-----------HHcCCceEEeeCCCCC-C-----------CCHHHHH
Confidence 773 2567899999999886311110 0011134455543211 1 3678999
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--ec
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LS 490 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~s 490 (965)
+++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... +..+|+++ ++
T Consensus 127 ~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~--~~~~d~~~~s~s 195 (392)
T 2z9v_A 127 DMLKAH-PEITVVSVCH-HDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPE--DCKADIYVTGPN 195 (392)
T ss_dssp HHHHHC-TTCCEEEEES-EEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGG--GGTCSEEEECSS
T ss_pred HHHhcC-CCCcEEEEec-cCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--ccccc--cccceEEEecCc
Confidence 988642 3456788888 8999998887 8999999999999999999996 4432 12222 23478776 46
Q ss_pred cccCCCcccceeeeecHHHHHhhhccC--C--c--------ccc--cccCCCCCCHHHHHHHHHHHHHHhcc---cHHHH
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKN--N--I--------NIF--LHSHSYSGNPLACCAALATLEIFNKD---NILQR 553 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~--~--~--------~~~--~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~ 553 (965)
|+++|+ .++|++++++++++.+.... . . ..+ ....+.+.++.+++++.++|+.+.+. ...++
T Consensus 196 K~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 274 (392)
T 2z9v_A 196 KCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWAR 274 (392)
T ss_dssp STTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 988775 46799999999887664200 0 0 000 01112345777888888888876543 46778
Q ss_pred HHHHHHHHHHHHHcccCCCcee-e-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKII-N-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~-~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p 625 (965)
.+++.+++.+.|+++ ....+. . ....+.++.+.+. ++. ....+.+.|.++ ||.+.++ .+.+|+++
T Consensus 275 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~ 347 (392)
T 2z9v_A 275 HALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTP--DGV----DEKALRQAARARYGVVFSSGRGETLGKLTRIGH 347 (392)
T ss_dssp HHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECC--TTC----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECC--CCC----CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeC
Confidence 888889999888775 222111 0 0114566666653 111 134677888887 9999874 37999996
Q ss_pred Cc-ccCHHHHHHHHHhhhccc
Q psy8199 626 PY-ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~-~~t~~~i~~~~~~l~~~~ 645 (965)
.. .+++++++++++++.+.+
T Consensus 348 ~~~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 348 MGPTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp CGGGCSHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHH
Confidence 43 889999999999887543
No 155
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.85 E-value=1.2e-20 Score=204.19 Aligned_cols=195 Identities=16% Similarity=0.243 Sum_probs=141.4
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc---cHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~---~~~~~~~~~~~i 759 (965)
..+.+ +++|+++|.||.++...+ +++.+++++|+++++.+.+.|++++.|+++....... ..+.+.++++.+
T Consensus 6 ~~v~i-s~GC~~~C~fC~~~~~~g----~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 6 AYVKI-SDGCDRGCTFCSIPSFKG----SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp EEEES-BCCC-------------C----CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred EEEEE-CCCCCCcCccCCccccCC----CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHH
Confidence 45666 899999999999875422 2456899999999999999999999998753221101 124577777777
Q ss_pred Hhc-Cc-EeE---EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH--cCCceeee
Q psy8199 760 KKI-GL-ETC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCG 829 (965)
Q Consensus 760 ~~~-~~-~i~---~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~ 829 (965)
++. ++ .+. +++..++++.++.|+++| ++++.+++|| ++++++.|+++++.++++++++.+++ .|+.+.++
T Consensus 81 ~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~ 160 (304)
T 2qgq_A 81 NSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTS 160 (304)
T ss_dssp HTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 764 54 232 456778999999999999 9999999999 99999999999999999999999999 79999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIR 884 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~ 884 (965)
+|+|+ |||.+++.++++++++++ ++.+.+++|.|.||||+++.+ +++.+...+
T Consensus 161 ~IvG~PgEt~ed~~~t~~~l~~l~--~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~ 215 (304)
T 2qgq_A 161 IIVGFPGETEEDFEELKQFVEEIQ--FDKLGAFVYSDEEGTVAFNLKEKVDPEMAKR 215 (304)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCC-----------CCCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeeCCCCChhHhCcCCCCHHHHHH
Confidence 99999 799999999999999999 899999999999999998765 556544333
No 156
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.85 E-value=2.4e-20 Score=219.11 Aligned_cols=331 Identities=10% Similarity=0.006 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHHhhcccccc---CCC--CcHHHHHHHHHHHhhcCCCC--CeE--EEcCChhHHHHHHHHHHHHHHHh
Q psy8199 270 HSNSYINKALKNQLNKLEHVML---SNL--THKPVIKLSEKLSSLTQYKL--GHC--FYGSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~~~~~~---~~~--~~~~~~~la~~l~~~~~~~~--~~v--~~~~sGseA~~~Al~~a~~~~~~ 340 (965)
|.++.+.+++.+++......+. ..+ ..+...+++++++++++... +++ +|++||++|++.|+++++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 3568888888777754321111 111 22344567788888886443 567 99999999999999999876422
Q ss_pred -cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 341 -KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 341 -~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
+| .++++|++..++|+++....... ...++.+|..... . .|+++|+++++
T Consensus 187 ~~g-~~~d~Vi~~~~~~~~~~~~~~~~-------------G~~v~~v~~~~~~-~-----------~d~~~Le~~i~--- 237 (514)
T 3mad_A 187 TKG-ITAPEAVVPVSAHAAFDKAAQYF-------------GIKLVRTPLDADY-R-----------ADVAAMREAIT--- 237 (514)
T ss_dssp HHC-CSSCEEEEETTSCTHHHHHHHHH-------------TCEEEEECBCTTS-C-----------BCHHHHHHHCC---
T ss_pred hcC-CCCCeEEEeCccchHHHHHHHHc-------------CCeeEEeeeCCCC-C-----------CCHHHHHHHhc---
Confidence 23 24478999999998863222221 1234555543211 1 27889998885
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC-----cccc---cccccccCCCcceee--e
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG-----RTGK---FFACEHAEIWPDFLC--L 489 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-----r~G~---~~~~~~~~~~pDivt--~ 489 (965)
+++++|++++ ++|++|.+.+ +++|+++|++||+++|+||+|++|. +.|. .+.....|+ |+++ +
T Consensus 238 ~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~ 310 (514)
T 3mad_A 238 PNTVVVAGSA-PGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADT 310 (514)
T ss_dssp TTEEEEEEET-TCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECT
T ss_pred cCCEEEEEeC-CCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECc
Confidence 3678888888 8999999876 8999999999999999999998863 3333 233344454 5554 5
Q ss_pred ccccCCCcccceeeeecHHHHHhhhcc--CCc------ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 490 SKGITGGYLPLSLVMTTDKIYNSIYYK--NNI------NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~~~i~~~~~~~--~~~------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+|.+.+| .++|+++++++.+...... ..+ ....+++++..+.+++.+++..+....-++..++++++.+++
T Consensus 311 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 389 (514)
T 3mad_A 311 HKYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389 (514)
T ss_dssp TTTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6887666 6899998887665432210 000 001122222222344444444443322245778888889999
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--CCEEEEeCC-cccCHHHHHHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPP-YILNKNEIQHMT 638 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~lR~~p~-~~~t~~~i~~~~ 638 (965)
.+.|+++ +++..+.....++.+... . .....+.+.|.++||++... ++.+|++++ ...+++++++++
T Consensus 390 ~~~L~~~---~g~~~~~~~~~~~~~~~~--~-----~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l 459 (514)
T 3mad_A 390 KAGVRAI---PSLKILGDPLWVIAVASD--E-----LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFL 459 (514)
T ss_dssp HHHHHTS---TTCEESSCCSSEEEEECS--S-----SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHH
T ss_pred HHHHhhC---CCeEEeCCCeEEEEEeCC--C-----CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHH
Confidence 9888765 444433333335555432 1 11346888999999987432 368999987 455678999999
Q ss_pred Hhhhccccc
Q psy8199 639 SAIFQTFNE 647 (965)
Q Consensus 639 ~~l~~~~~~ 647 (965)
+++.+++..
T Consensus 460 ~~L~~~l~~ 468 (514)
T 3mad_A 460 ADLQDAVAQ 468 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776543
No 157
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.85 E-value=1.2e-20 Score=214.03 Aligned_cols=334 Identities=11% Similarity=0.074 Sum_probs=219.5
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEV 329 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~ 329 (965)
.+|+.|+|..+... .+|++.+|+.+++.. ++ .....+...++.+.++++++.+.+ ++++++||++|++.
T Consensus 16 ~~~~~~~~~~g~~~------~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 16 VTPNKLLMGPGPSN------APQRVLDAMSRPILG--HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEA 85 (393)
T ss_dssp CCCCCEECSSSCCC------CCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHH
T ss_pred CCCCeEEecCCCCC------CCHHHHHHHHhhhcc--CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 45677777554322 689999998876543 11 112345678899999999976554 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+. .++++|++.+++||+.....+. ......+..+|.+.. +. .|++
T Consensus 86 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~-~~-----------~d~~ 134 (393)
T 2huf_A 86 TLCNLL--------EDGDVILIGHTGHWGDRSADMA-----------TRYGADVRVVKSKVG-QS-----------LSLD 134 (393)
T ss_dssp HHHHHC--------CTTCEEEEEESSHHHHHHHHHH-----------HHTTCEEEEEECCTT-CC-----------CCHH
T ss_pred HHHHHh--------CCCCEEEEECCCcchHHHHHHH-----------HHcCCeeEEEeCCCC-CC-----------CCHH
Confidence 999873 2567899999999885211110 000112344444321 11 3678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
+|++++++. ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+++ +|.. .+... ...+|++++
T Consensus 135 ~l~~~i~~~--~~~~v~~~~-~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~ 202 (393)
T 2huf_A 135 EIRDALLIH--KPSVLFLTQ-GDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMD--RWEIDAMYT 202 (393)
T ss_dssp HHHHHHHHH--CCSEEEEES-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCSEEEC
T ss_pred HHHHHHhcc--CCcEEEEEc-cCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchh--hcCccEEEE
Confidence 898888642 345666667 7999999887 8899999999999999999985 5432 12222 234788765
Q ss_pred --ccccCCCcccceeeeecHHHHHhhhccC-Cccccc---------------ccCCC-CCCHHHHHHHHHHHHHHhc---
Q psy8199 490 --SKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFL---------------HSHSY-SGNPLACCAALATLEIFNK--- 547 (965)
Q Consensus 490 --sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~---------------~~~t~-~~~~~~~aaa~a~L~~~~~--- 547 (965)
+|+++|+ .++|++++++++++.+.... ...++. ...++ +.+..+++++.++|+.+.+
T Consensus 203 s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 281 (393)
T 2huf_A 203 GSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL 281 (393)
T ss_dssp CSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence 5988764 46699999999988775420 011111 11222 3466677777778887643
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeee-ceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCE
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNT 620 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~ 620 (965)
+...++++++.+++.+.|+++ ....+.... ..+.++.+.+. ++. ....+.+.|.++ ||.+.++ .++
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~~gi~v~~g~~~~~~~~ 354 (393)
T 2huf_A 282 PALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVP--QGV----DWLKAAQYAMKTYLVEISGGLGPTAGQV 354 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECC--TTC----CHHHHHHHHHHHHCEECBCCCGGGTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcC--CCC----CHHHHHHHHHHhCCEEEecCcccccCCE
Confidence 346778888889999988775 222111111 12346666553 111 134577788764 9999874 379
Q ss_pred EEEeC-CcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMP-PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p-~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|+++ ++..++++++++++++.+.+
T Consensus 355 ~Ri~~~~~~~~~e~i~~~~~~l~~~~ 380 (393)
T 2huf_A 355 FRIGLMGQNATTERVDRVLQVFQEAV 380 (393)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEEcccCcCCHHHHHHHHHHHHHHH
Confidence 99998 66678999999999887654
No 158
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.85 E-value=3e-21 Score=219.62 Aligned_cols=337 Identities=11% Similarity=0.025 Sum_probs=200.4
Q ss_pred EEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc-----cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 247 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+.++.++..|||+.++. ..+|++.+|+.+++..... +.......+...++.++++++++...+++++++
T Consensus 14 ~~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 45678888999987653 4689999999998875311 001112345568899999999986667999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCce-EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~-~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
||++|++.+++.+..++.. +++ .|++.++.|+++......+.. ....+..+|..... .
T Consensus 88 g~t~al~~~~~~l~~~~~~----~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~-~------ 146 (400)
T 3vax_A 88 GATESNNIALLGLAPYGER----TGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGPSG-R------ 146 (400)
T ss_dssp CHHHHHHHHHHTTHHHHHH----HTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCTTC-C------
T ss_pred CHHHHHHHHHHHHHHhhcc----CCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCCCC-C------
Confidence 9999999999987632111 356 899988888765322221110 11134445543211 1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .....
T Consensus 147 -----~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~----~~~~~ 208 (400)
T 3vax_A 147 -----ISVEGVMERLR---PDTLLVSLMH-VNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV----PGDLT 208 (400)
T ss_dssp -----CCHHHHHTTCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS----GGGGG
T ss_pred -----cCHHHHHHhcC---CCceEEEEEC-CCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC----CcChh
Confidence 26788887774 4678899998 8999999887 8999999999999999999996 4332 12222
Q ss_pred CCCcceeeec--cccCCCcccceeee-ecHH-HH------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--c
Q psy8199 481 EIWPDFLCLS--KGITGGYLPLSLVM-TTDK-IY------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--D 548 (965)
Q Consensus 481 ~~~pDivt~s--K~l~gG~~pig~v~-~~~~-i~------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~ 548 (965)
+. +|++++| | +.|+ .++|+++ ++++ +. ..+..++.. .....+.+.++.+++++.++++.+.+ +
T Consensus 209 ~~-~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 283 (400)
T 3vax_A 209 TP-IDMISISGHK-IGAP-KGVGALVTRRREEMDDERVPLEPIMFGGGQ--ERKLRPGTLPVPLIMGLAEAAKIFEAEHA 283 (400)
T ss_dssp SC-CSEEEEETGG-GTSC-SSCEEEEECBCSSSTTCBCCCCCSSCSSCT--GGGTSCSCCCHHHHHHHHHHHHHHHHSHH
T ss_pred hc-CcEEEEeHHH-hCCC-CceEEEEEecchhccccccccCceecCCCc--eeeeecCCCCHHHHHHHHHHHHHHHhhHH
Confidence 33 8888655 8 4443 4688888 7762 11 111110000 00112334577888888888887654 4
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------- 617 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------- 617 (965)
+..++.+++.+++.+.|+ . +++...... +.++.+.+. + .....+.+.|. +||.++++
T Consensus 284 ~~~~~~~~~~~~l~~~L~-~---~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~L~-~gi~v~~g~~~~~~~ 351 (400)
T 3vax_A 284 QWQVAAQDLRSRLLAGLA-S---TSFQVNGDQDHVVPHILNLSFE--D-----VDAEAFLVTLK-DLVAVATGSASTSAS 351 (400)
T ss_dssp HHHHHHHHHHHHHHHHHT-T---TTCEECSCTTSBCTTEEEEECT--T-----CCHHHHHHHHH-HHHHHTTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhC-C---CCEEEeCCcccCCCCEEEEEeC--C-----CCHHHHHHHHh-cCcEEEecccccCCC
Confidence 567777778888888776 3 344322222 346666543 1 11345777788 88877652
Q ss_pred -----------------CCEEEEeC-CcccCHHHHHHHHHhhhccc
Q psy8199 618 -----------------GNTVYLMP-PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -----------------~~~lR~~p-~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+||++ +...++++++++++++.+.+
T Consensus 352 ~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~ 397 (400)
T 3vax_A 352 FTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLK 397 (400)
T ss_dssp ECCHHHHHTTTCCHHHHTSEEEEEEEEC------------------
T ss_pred CCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence 37999998 88899999999999887654
No 159
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.85 E-value=2.5e-20 Score=214.42 Aligned_cols=354 Identities=10% Similarity=0.081 Sum_probs=209.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+|..|||+.++. +.+|++++|+.+++.....+....+ ..+...++.++++++++.+.++++|++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567899987652 5799999999999876321111122 12345789999999997666799999999999
Q ss_pred HHHHHHHHHH-HHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcc----cCCCeeEecCCCCCCCCCCCChh
Q psy8199 327 VEVALKMSFH-YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS----LLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 327 ~~~Al~~a~~-~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
++.+++.+.. +..... .++++|++++++||++.....+...+......+.. ....+..+|.....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~-~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~------- 162 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQT-LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ------- 162 (432)
T ss_dssp HHHHHHHHHHHHHHHHH-HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS-------
T ss_pred HHHHHHHHHhhhhhccc-cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC-------
Confidence 9999998752 211000 13578999999999973332222222221111111 1234455554321111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC----------CeEEEeccccCCCcc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN----------IHLIADEIAVGCGRT 471 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tg~gr~ 471 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++|| +++|+||+|. +|+.
T Consensus 163 ----~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~ 229 (432)
T 3a9z_A 163 ----VEVEDILAAVR---PTTCLVTIML-ANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKR 229 (432)
T ss_dssp ----CCHHHHHHTCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTS
T ss_pred ----cCHHHHHHhcc---CCceEEEEEC-cccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCc
Confidence 26788887774 4578888888 8999999887 788999999999 9999999994 5543
Q ss_pred cccccccccCCCcceeee--ccccCCCcccceeeeecHHH-HHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 472 GKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTTDKI-YNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 472 G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~~~i-~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
. + ......+|++++ +|.+ | .++|++++++++ ...+.... .........+++.|+.+++++.++|+.+.+
T Consensus 230 ~--~--~~~~~~~d~~~~s~~K~~--g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~ 302 (432)
T 3a9z_A 230 R--V--DVEDLGVDFLTIVGHKFY--G-PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSE 302 (432)
T ss_dssp C--C--CHHHHCCSEEEEEGGGTT--C-CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHH
T ss_pred c--c--ChhhcCCCEEEEehhHhc--C-CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHh
Confidence 1 1 111235788754 8965 3 469999998765 22222100 000001123356788899888889987654
Q ss_pred --ccHHHHHHHHHHHHHHHHHcccCCCcee------eeeceeEEEEEEEeecCccchhhHHHHHHHHH------------
Q psy8199 548 --DNILQRISQDMKKITKALTSLITHPKII------NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA------------ 607 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~l~~~~~i~------~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l------------ 607 (965)
++..++++++.+++.+.|+++... .+. ..+..+.+..+.+. ..+.. ...+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~l~~i~~~~G~~~~ 376 (432)
T 3a9z_A 303 NCETYEAHMRDIRDYLEERLEAEFGK-RIHLNSRFPGVERLPNTCNFSIQ-GSQLR----GYMVLAQCQTLLASVGASCH 376 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG-GEEESSCCTTCCBCTTEEEEEEC-STTCC----HHHHHHHCSSEECBSSCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCC-cEEEeCCCCcccCCCCEEEEEeC-CCCCc----HHHHHHHhcCeEEecccccc
Confidence 456778888888998888774211 111 01233446666664 11101 12232222
Q ss_pred -----------HHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 608 -----------LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 608 -----------~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
...|+......+++|++++..+++++++++++++.+.+
T Consensus 377 ~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 377 SDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp GGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 11222111123789999998889999999999987654
No 160
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.85 E-value=2e-20 Score=212.59 Aligned_cols=322 Identities=12% Similarity=0.060 Sum_probs=215.5
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
+.|+|+.++.+. ++ |++.+|+.++++... ....+...++.+.++++++ .+.+++++||++|++.+++.
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-----y~~~~~~~~l~~~la~~~~--~~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-----YLLGPELEGFEAEFAAYCE--TDHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-----CSSSHHHHHHHHHHHHHTT--SSEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-----CCCchhHHHHHHHHHHHHC--CCeEEEecCHHHHHHHHHHH
Confidence 689999888654 32 999999999887631 1234678899999999985 45889999999999999987
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
++. .++++|++.+++||+..... ...| ..+..+|.....+. .|+++|++
T Consensus 98 ~~~-------~~gd~vl~~~~~~~~~~~~~-~~~g------------~~~~~~~~~~~~~~-----------~d~~~l~~ 146 (399)
T 2oga_A 98 LGI-------GPGDEVIVPSHTYIASWLAV-SATG------------ATPVPVEPHEDHPT-----------LDPLLVEK 146 (399)
T ss_dssp TTC-------CTTCEEEEESSSCTHHHHHH-HHTT------------CEEEEECBCSSSSS-----------BCHHHHHH
T ss_pred hCC-------CCcCEEEECCCccHHHHHHH-HHCC------------CEEEEEecCCCCCC-----------cCHHHHHH
Confidence 621 35688999999999864322 2222 12334443221111 36788888
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec---
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--- 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--- 490 (965)
++. +++++|++ ++++|.+.+ +++|.++|++||+++|+||+|+ +|.... ...++..+|++++|
T Consensus 147 ~i~---~~~~~v~~----~n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~~~ 211 (399)
T 2oga_A 147 AIT---PRTRALLP----VHLYGHPAD----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSFYP 211 (399)
T ss_dssp HCC---TTEEEECC----BCGGGCCCC----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEECCT
T ss_pred hcC---CCCeEEEE----eCCcCCccC----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeCCC
Confidence 875 35677664 356787765 8999999999999999999997 332111 11223336888874
Q ss_pred -cccCCCcccceeeeec-HHHHHhhhc---cCCccccc---ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 491 -KGITGGYLPLSLVMTT-DKIYNSIYY---KNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 491 -K~l~gG~~pig~v~~~-~~i~~~~~~---~~~~~~~~---~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
|.+++.+ +.|+++++ +++++.+.. .+....+. .+.++..++++++++.++|+.++ .+.++.+++.+++.
T Consensus 212 sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~ 288 (399)
T 2oga_A 212 GKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYL 288 (399)
T ss_dssp TSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHH
T ss_pred CccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9998722 78888886 788766543 11000011 13345678999999999987654 35677777888888
Q ss_pred HHHHcccCCCcee--eeeceeE--EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------------------
Q psy8199 563 KALTSLITHPKII--NFRQKGM--IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------------------- 618 (965)
Q Consensus 563 ~~L~~l~~~~~i~--~v~g~G~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------------- 618 (965)
+.|+++ +++. .....+. ++.+.+. .. ....+.+.|.++||.+++..
T Consensus 289 ~~L~~~---~g~~~~~~~~~~~~~~~~~~~~-~~------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
T 2oga_A 289 SGLAGL---PGIGLPVTAPDTDPVWHLFTVR-TE------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSL 358 (399)
T ss_dssp HHTTTC---TTCBCCCCCTTEECCCSSEEEE-CS------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSC
T ss_pred HHhccC---CCccccCCCCCCcceeEEEEEE-CC------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCC
Confidence 877654 2322 1122222 2223332 11 13467888999999987531
Q ss_pred --------CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 619 --------NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 --------~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.+|++++..+++++++++++++.+.+.
T Consensus 359 p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 359 PRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp HHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999876543
No 161
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.85 E-value=5.3e-20 Score=208.12 Aligned_cols=286 Identities=10% Similarity=0.089 Sum_probs=199.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..++++...+++++++++++.. ..++++||++|++.+++.+. .++++|++.++.||+........
T Consensus 47 ~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~----- 111 (386)
T 1cs1_A 47 SRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSL----- 111 (386)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHH-----
T ss_pred eCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcHhHHHHHHHH-----
Confidence 4567788889999999998643 55555778999999999773 25688999999998742110000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+..++. .|+++|++++++ ++++|++++ ++|++|.+.+ +++|+++
T Consensus 112 ----~~~~g~~~~~~~~-----------------~d~~~l~~~i~~---~~~~v~~~~-~~nptG~~~~----l~~i~~l 162 (386)
T 1cs1_A 112 ----AKRGCYRVLFVDQ-----------------GDEQALRAALAE---KPKLVLVES-PSNPLLRVVD----IAKICHL 162 (386)
T ss_dssp ----HTTTSCEEEEECT-----------------TCHHHHHHHHHT---CCSEEEEEC-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHhcCCEEEEeCC-----------------CCHHHHHHhhcc---CCcEEEEeC-CCCCCCcccC----HHHHHHH
Confidence 0011112334443 267889988863 567888898 8999999886 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecH-HHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTD-KIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~-~i~~~~~~~~~~~~~~~~~t 527 (965)
|++||+++|+||+|+++... .. . ...+|++ +++|++++++.++ |++++++ ++++.+.. +.++.+
T Consensus 163 ~~~~~~~li~De~~~~~~~~-~~--~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~------~~~~~~ 230 (386)
T 1cs1_A 163 AREVGAVSVVDNTFLSPALQ-NP--L---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIG 230 (386)
T ss_dssp HHHTTCEEEEECTTTCTTTC-CG--G---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHHT
T ss_pred HHHcCCEEEEECCCcccccC-Cc--c---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH------HHHhcC
Confidence 99999999999999876432 11 1 2345666 6899998765566 8888886 78877754 234445
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCceee----------eeceeEEEEEEEeecC
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------FRQKGMIWAFDVIIED 592 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~~----------v~g~G~~~~i~~~~~~ 592 (965)
.+.+++++++++++++.+. ...++..++.+++.+.|+++.. .+.+.. .++.|.++.+.+. +
T Consensus 231 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 306 (386)
T 1cs1_A 231 VTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD--G 306 (386)
T ss_dssp CBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S
T ss_pred CCCCHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC--C
Confidence 6689999988888876542 2355666677777777765411 122111 2456889998874 2
Q ss_pred ccchhhHHHHHHHHHHHcCcEEee---c----------------------------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 593 PEQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 593 ~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
. ...+.+.|.++||+++. + .+++|+++++..++++++.+.+.+
T Consensus 307 -----~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al 380 (386)
T 1cs1_A 307 -----D-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGF 380 (386)
T ss_dssp -----C-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred -----C-HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHH
Confidence 1 23466778889998863 1 269999999988888888877766
Q ss_pred hc
Q psy8199 642 FQ 643 (965)
Q Consensus 642 ~~ 643 (965)
.+
T Consensus 381 ~~ 382 (386)
T 1cs1_A 381 RA 382 (386)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 162
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.85 E-value=5.5e-20 Score=207.60 Aligned_cols=333 Identities=11% Similarity=-0.004 Sum_probs=218.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccC-----CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-----NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
-|||+.++. ..+|++.+|+.+++.+....... ....+...++.++++++++.+.+++++++||++|++.
T Consensus 2 iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 2 AYFDYTSAK------PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTCC------CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred EeecCCCcC------CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence 488887653 47899999999998763211111 1224456789999999998766789999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+...+. .+++.|++.++.|++.......+. .....+..+|..... . .|++
T Consensus 76 ~~~~~~~~~~----~~gd~vi~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~-~-----------~d~~ 129 (382)
T 4hvk_A 76 AIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQ----------KQGFEVEYIPVGKYG-E-----------VDVS 129 (382)
T ss_dssp HHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHH----------HTTCEEEEECBCTTS-C-----------BCHH
T ss_pred HHHHhhhhhc----CCCCEEEECCCCcHHHHHHHHHHH----------hcCCEEEEeccCCCC-C-----------cCHH
Confidence 9997753210 156789999988887643222110 001123444443211 1 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC- 488 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt- 488 (965)
+|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..... .+|+++
T Consensus 130 ~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d~~~~ 195 (382)
T 4hvk_A 130 FIDQKLR---DDTILVSVQH-ANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GADMLTI 195 (382)
T ss_dssp HHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCSEEEE
T ss_pred HHHHHhc---cCceEEEEEC-CCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCCEEEE
Confidence 8888875 4678899998 8999998887 8899999999999 99999986 4321 1222222 357775
Q ss_pred -eccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Q psy8199 489 -LSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKA 564 (965)
Q Consensus 489 -~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 564 (965)
++|.+ |+ .++|+++++++. +..+..++.. .....+.+.++.+++++.++++.+.+ +...++.+++.+++.+.
T Consensus 196 s~~K~~-g~-~g~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4hvk_A 196 SSNDIY-GP-KGVGALWIRKEAKLQPVILGGGQ--ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp ESGGGT-SC-TTCEEEEEETTCCCCCSSCSSCT--GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHhc-CC-CceEEEEEcCccCcCcccccCCC--cCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56954 32 358888887654 1111110000 00112334578888888888876543 44667777788888887
Q ss_pred HHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------------------
Q psy8199 565 LTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 617 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------- 617 (965)
|+++ |++...... +.++.+.+. . .....+.+.|.++||.+.++
T Consensus 272 L~~~---~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (382)
T 4hvk_A 272 VLKI---EESYLNGHPEKRLPNNVNVRFS--Y-----IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEE 341 (382)
T ss_dssp HTTS---TTEEECSCSSSBCTTEEEEEET--T-----CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHH
T ss_pred HhcC---CCeEEeCCccccCCCEEEEEEC--C-----CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhh
Confidence 7654 444332222 235555553 1 11346778889999998864
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++..+++++++++++++.+.+.+
T Consensus 342 ~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 342 AHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp HHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999889999999999998876543
No 163
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.84 E-value=9.7e-20 Score=205.71 Aligned_cols=333 Identities=11% Similarity=-0.003 Sum_probs=218.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
.|||+.++ |+.+|+|++|+.+++..........+ ..+...++.+.++++++.+.+++++++||++|++.
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 75 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence 48898765 46899999999999876311111112 13466889999999997666799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+..++. .++++|++.+++|++.......+.. ....+..+|.... +. .|++
T Consensus 76 ~~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~-~~-----------~d~~ 129 (382)
T 4eb5_A 76 AIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKY-GE-----------VDVS 129 (382)
T ss_dssp HHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCTT-SC-----------BCHH
T ss_pred HHHHHHhhcc----CCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCCC-Cc-----------cCHH
Confidence 9998863211 1457899999999876333221110 0112344443221 11 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC- 488 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt- 488 (965)
+|++++. +++.+|+++. ++|++|.+.+ +++|.++|++||++ |+||+|+ +|... +.... ..+|+++
T Consensus 130 ~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~--~~~di~~~ 195 (382)
T 4eb5_A 130 FIDQKLR---DDTILVSVQH-ANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEK--IGADMLTI 195 (382)
T ss_dssp HHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHH--HTCSEEEE
T ss_pred HHHHHhc---CCCeEEEEec-cCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCccc--cCCCEEEe
Confidence 8888875 3577888888 8999999887 89999999999999 9999996 54321 11222 2468775
Q ss_pred -eccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Q psy8199 489 -LSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKA 564 (965)
Q Consensus 489 -~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 564 (965)
++|.++. ..+|+++++++. +..+..++... ......+.++.+++++.++|+.+.+ +...++.+++.+++.+.
T Consensus 196 s~sK~~g~--~g~G~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4eb5_A 196 SSNDIYGP--KGVGALWIRKEAKLQPVILGGGQE--NGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp ETGGGTCC--SSCEEEEEETTCCCCCSSCSSCTG--GGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHhcCC--CceEEEEEccccccCceecCCCcc--ccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5696332 247888888763 22111100000 0112234567777888888887654 34566777777788777
Q ss_pred HHcccCCCceeeeec----eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------------------
Q psy8199 565 LTSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 617 (965)
Q Consensus 565 L~~l~~~~~i~~v~g----~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------- 617 (965)
|+++ |++....+ .+.++.+.+. . . ....+.+.|.++||.+.++
T Consensus 272 L~~~---~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (382)
T 4eb5_A 272 VLKI---EESYLNGHPEKRLPNNVNVRFS--Y-I----EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEE 341 (382)
T ss_dssp HTTS---TTEEECSCSSSBCTTEEEEEET--T-S----CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHH
T ss_pred HhhC---CCeEEeCCcccCCCCEEEEEeC--C-c----CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhc
Confidence 7654 44443322 2556666653 1 0 1345778888999998763
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++...++++++++++++.+.+..
T Consensus 342 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 342 AHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp HTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999988888999999999998876543
No 164
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.84 E-value=9.6e-20 Score=205.92 Aligned_cols=284 Identities=13% Similarity=0.104 Sum_probs=198.3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+++++++++.+ .+++++++||++|++.+++.+. .++++|++.++.||+........
T Consensus 61 ~r~~~~~~~~l~~~la~~~g--~~~~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~----- 125 (392)
T 3qhx_A 61 ARTGNPTRTALEAALAAVED--AAFGRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKV----- 125 (392)
T ss_dssp TTTCCHHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHT-----
T ss_pred cCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHH-----
Confidence 45678888999999999985 4589999999999999999763 35689999999998752211110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|+++
T Consensus 126 ----~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l 176 (392)
T 3qhx_A 126 ----FTGWNVEYTPVAL-----------------ADLDAVRAAIR---PTTRLIWVET-PTNPLLSIAD----IAGIAQL 176 (392)
T ss_dssp ----GGGGTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHhcCcEEEEeCC-----------------CCHHHHHHhhC---CCCeEEEEEC-CCCCCcEEec----HHHHHHH
Confidence 1111223444443 26788888875 4789999999 8999999887 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeeec-HHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTT-DKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t 527 (965)
|++||+++|+||+|+.+ . .....+..+|+++ ++|.+++++ .++|+++++ +++++.+.. ..+..+
T Consensus 177 a~~~g~~li~D~~~~~~-~-----~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~------~~~~~g 244 (392)
T 3qhx_A 177 GADSSAKVLVDNTFASP-A-----LQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF------LQNGAG 244 (392)
T ss_dssp HHHHTCEEEEECTTTCT-T-----TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH------HHHHHC
T ss_pred HHHcCCEEEEECCCccc-c-----cCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH------HHHhcC
Confidence 99999999999999632 1 2233345689887 899998753 578888887 578777654 234456
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee------------------eceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------------~g~G~~~~i~~~ 589 (965)
+..+|+.++++++.++.+.. ..++..++.+++.+.|++. |.+..+ +|.|.+++|++.
T Consensus 245 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~l~~~L~~~---~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~ 319 (392)
T 3qhx_A 245 AVPGPFDAYLTMRGLKTLVL--RMQRHSENAAAVAEFLAEH---PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMR 319 (392)
T ss_dssp CCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred CCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHhcC---CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeC
Confidence 77899999998888875532 3566667777777777653 333222 567899999986
Q ss_pred ecCccchhhHHHHHHHHHHHcCcEEe----------e---------------cCCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 590 IEDPEQIETFSKKFFVAALKNELLLR----------P---------------IGNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~~~Gi~~~----------~---------------~~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+ ...+..+...+...|+.+. | ..+.|||+.....+++.++.+.+++
T Consensus 320 -~~----~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 320 -AG----RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp -TC----HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred -Cc----HHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 21 1224456666655554332 1 1256888877766666666655543
No 165
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.84 E-value=3.8e-20 Score=210.25 Aligned_cols=319 Identities=12% Similarity=0.078 Sum_probs=211.8
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|++.+|+.+++.. ++ ..+......++.+.+++.++...+ ++++++||++|++.+++.+. .++++|
T Consensus 29 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~v 96 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRV 96 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEE
T ss_pred CCHHHHHHhcccccc--CC--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--------CCCCeE
Confidence 468888887665432 11 112234578899999999987666 89999999999999999873 256789
Q ss_pred EEEcCCccCCcc-ccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 350 ICLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 350 i~~~~~yHg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
++.+++|+++.. ......| ..+..++.+... . .|+++|++++++. ++++|+++
T Consensus 97 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~-----------~d~~~l~~~l~~~--~~~~v~~~ 150 (396)
T 2ch1_A 97 LIAVNGIWAERAVEMSERYG------------ADVRTIEGPPDR-P-----------FSLETLARAIELH--QPKCLFLT 150 (396)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTS-C-----------CCHHHHHHHHHHH--CCSEEEEE
T ss_pred EEEcCCcccHHHHHHHHHcC------------CceEEecCCCCC-C-----------CCHHHHHHHHHhC--CCCEEEEE
Confidence 999999998731 1111111 123444443211 1 3678899888742 34566666
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|.++|++||+++|+||+|. +|.. ..... ...+|++++| |.++++ .++|+++++
T Consensus 151 ~-~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~~~~ 219 (396)
T 2ch1_A 151 H-GDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAP-PGITPISIS 219 (396)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCC-SSCEEEEEC
T ss_pred C-CCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCC-CCeEEEEEC
Confidence 6 6899998887 8899999999999999999997 6532 12222 2347888755 988876 578999999
Q ss_pred HHHHHhhhccC-Cccccc----------------ccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Q psy8199 507 DKIYNSIYYKN-NINIFL----------------HSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 566 (965)
Q Consensus 507 ~~i~~~~~~~~-~~~~~~----------------~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~ 566 (965)
+++++.+.... +...+. ....++.+..+++++.++|+.+.+ +...++++++.+++.+.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 220 PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98887764310 000000 112234577788888899987643 2467778888888988887
Q ss_pred cccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC-CcccCHHHHHHH
Q psy8199 567 SLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP-PYILNKNEIQHM 637 (965)
Q Consensus 567 ~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p-~~~~t~~~i~~~ 637 (965)
++ ....+.... ..+.++.+.+. ++. ....+.+.|.++ ||.++++ .+++|+++ ++..++++++++
T Consensus 300 ~~-g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~ 372 (396)
T 2ch1_A 300 KM-GLDIFVKDPRHRLPTVTGIMIP--KGV----DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFY 372 (396)
T ss_dssp HH-TCCBSSCSGGGBCTTEEEEECC--TTC----CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred HC-CCeeccCCccccCCceEEEEcC--CCC----CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHH
Confidence 76 222111110 12336666553 111 134677888765 9999873 37999998 667899999999
Q ss_pred HHhhhccc
Q psy8199 638 TSAIFQTF 645 (965)
Q Consensus 638 ~~~l~~~~ 645 (965)
++++.+.+
T Consensus 373 ~~~l~~~l 380 (396)
T 2ch1_A 373 LYGFKESL 380 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 166
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.84 E-value=2.7e-19 Score=203.97 Aligned_cols=303 Identities=13% Similarity=0.055 Sum_probs=203.9
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy8199 267 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 346 (965)
Q Consensus 267 ~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~ 346 (965)
.++|.+|+.++++.+ .... +......++...+++++++++++ .+++++++||++|++.+++.+. .++
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~-~~y~~~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~al~~l~--------~~g 95 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEG-YVYARQKDPTAKALEERLKALEG--ALEAVVLASGQAATFAALLALL--------RPG 95 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCS-CSBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--------CTT
T ss_pred eeecCChHHHHHHhc--cccC-cCcCCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCC
Confidence 466777776655544 2222 22234456788999999999995 4689999999999999998762 256
Q ss_pred eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEE
Q psy8199 347 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426 (965)
Q Consensus 347 ~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii 426 (965)
++|++.++.||+......... ......+.+++. |+++|+++++ +++++|+
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~------------------~~~~l~~~i~---~~~~~v~ 145 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVL---------SLMGVTVRYVDP------------------EPEAVREALS---AKTRAVF 145 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTT---------TTTTCEEEEECS------------------SHHHHHHHCC---TTEEEEE
T ss_pred CEEEEeCCCchhHHHHHHHHH---------HHcCCEEEEECC------------------CHHHHHHHhc---cCCeEEE
Confidence 889999999876422111000 001112334332 3678888774 4688999
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeee
Q psy8199 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVM 504 (965)
Q Consensus 427 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~ 504 (965)
+++ ++|++|.+.+ +++|.++|++||+++|+||+|++++... ...+..+|+++ ++|.+++++.++|+++
T Consensus 146 ~~~-~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~ 215 (412)
T 2cb1_A 146 VET-VANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAV 215 (412)
T ss_dssp EES-SCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EeC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEE
Confidence 999 8999999886 9999999999999999999998653221 12234578886 7899987557899877
Q ss_pred ecH----------------------------HHHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHH
Q psy8199 505 TTD----------------------------KIYNSIYYKNNINIFL-HSHSYSGNPLACCAALATLEIFNKDNILQRIS 555 (965)
Q Consensus 505 ~~~----------------------------~i~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~ 555 (965)
+.+ ++.+.++. +. ....+..+|.+++.+...++.+. ...++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~------~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~ 287 (412)
T 2cb1_A 216 LSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRT------LGLSLCGMALSPFNAYLLFQGLETVA--LRVARMS 287 (412)
T ss_dssp EECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHH------HHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHH
T ss_pred EeccccccccccccccccccccchhhccchHHHHHHHHH------HHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHH
Confidence 654 23333322 11 11223557888888777776553 3455666
Q ss_pred HHHHHHHHHHHcccCCCceeee------------------eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 556 QDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v------------------~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
++.+++.+.|.+. +++..+ ++.|.++.|.+. + .+.+.+.+.+.||++ ..
T Consensus 288 ~~~~~l~~~L~~~---~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~--~-------~~~~~~~l~~~~i~~-~~ 354 (412)
T 2cb1_A 288 ETARFLAERLQGH---PKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLG--D-------LERASRFLGAIRLLK-AA 354 (412)
T ss_dssp HHHHHHHHHHHTC---TTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECS--S-------HHHHHHHHHHCSSEE-CS
T ss_pred HHHHHHHHHHHcC---CCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeC--C-------HHHHHHHHHhCCeee-ec
Confidence 7888888888764 333322 356778888772 2 223455666778876 22
Q ss_pred -------------------------------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 -------------------------------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 -------------------------------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+.+|+++....++++++.+.+++.+
T Consensus 355 s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 355 NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 36899999999999999998887753
No 167
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.84 E-value=2.2e-20 Score=208.41 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=212.0
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|+|.+|+.+++.. +. .....+...++.+.++++++.. .+++++++||++|+..+++.+. + ++
T Consensus 11 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------~-d~ 76 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HL--DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------R-GP 76 (353)
T ss_dssp CCHHHHGGGGSCCCC--TT--CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------C-CC
T ss_pred CCHHHHHHHhccccc--cc--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------C-Cc
Confidence 579999998876653 11 1112345788999999998754 5689999999999999988662 3 67
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
|++.+++||++...... ......+..+|.+... . .|+++|++++++. ++++|+++
T Consensus 77 vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~-~-----------~d~~~l~~~l~~~--~~~~v~~~ 131 (353)
T 2yrr_A 77 VLVLVNGAFSQRVAEMA-----------ALHGLDPEVLDFPPGE-P-----------VDPEAVARALKRR--RYRMVALV 131 (353)
T ss_dssp EEEEECSHHHHHHHHHH-----------HHTTCCEEEEECCTTS-C-----------CCHHHHHHHHHHS--CCSEEEEE
T ss_pred EEEEcCCCchHHHHHHH-----------HHcCCceEEEeCCCCC-C-----------CCHHHHHHHHHhC--CCCEEEEE
Confidence 99999999885111100 0011134455543211 1 3678899988752 45567777
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|.++|++||+++|+||+| ++|... +....+ .+|++++ +|.++|+ .++|+++++
T Consensus 132 ~-~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~ 200 (353)
T 2yrr_A 132 H-GETSTGVLNP----AEAIGALAKEAGALFFLDAVT-TLGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAAS 200 (353)
T ss_dssp S-EETTTTEECC----HHHHHHHHHHHTCEEEEECTT-TTTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEEC
T ss_pred c-cCCCcceecC----HHHHHHHHHHcCCeEEEEcCc-cccccc--cccccc--CceEEEecCcccccCC-CceEEEEEC
Confidence 7 7999999886 889999999999999999999 476542 222222 3687765 6988775 368999999
Q ss_pred HHHHHhhhccCCc-------ccc--cccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCCCce
Q psy8199 507 DKIYNSIYYKNNI-------NIF--LHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKI 574 (965)
Q Consensus 507 ~~i~~~~~~~~~~-------~~~--~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i 574 (965)
+++++.+...... ... ....+++.++.+++++.++|+.+.+. +..++.+++.+++.+.|+++ ++
T Consensus 201 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~ 276 (353)
T 2yrr_A 201 LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR----GF 276 (353)
T ss_dssp HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----CC
Confidence 9988766410000 000 01123355788888888888876543 46778888888888888765 22
Q ss_pred eeeec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHH-HHHHhhhcc
Q psy8199 575 INFRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQ-HMTSAIFQT 644 (965)
Q Consensus 575 ~~v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~-~~~~~l~~~ 644 (965)
..+.+ .+.++.+.+. ++. ....+.+.|.++||.+.++ .+++|++++...++++++ ++++++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 277 RPYPKASPLPTVLVVRPP--EGV----DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp EESCSSSBCTTEEEEECC--TTC----CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCccCCCeEEEEECC--CCC----CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 22212 3445556653 111 1346788899999999864 368999988788889998 999888654
No 168
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.84 E-value=2.1e-20 Score=219.50 Aligned_cols=356 Identities=12% Similarity=0.017 Sum_probs=216.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC----CC-CCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YK-LGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~-~~~v~~~~sGseA 326 (965)
.|.+|++...+++....++.+|++++++.+++....++....+..+....+++.+.+..+ .. .+++++|+||++|
T Consensus 97 ~g~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~a 176 (533)
T 3f6t_A 97 DEDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAA 176 (533)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHH
T ss_pred CcccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHH
Confidence 455666655555556677788999999988887644443445667778888888866522 11 3689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC---CCCCCCCCChhHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD---SRNINKGNSANEI 403 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 403 (965)
+..+++...... --.++++|++.+++|+++.......+. .+..++.+. ....
T Consensus 177 l~~~~~~l~~~~---l~~~gd~Viv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~--------- 231 (533)
T 3f6t_A 177 IVYAFHSLAENH---LLKKGDKIAINEPIFTPYLRIPELKDY-------------ELVEVDLHSYEKNDWE--------- 231 (533)
T ss_dssp HHHHHHHHHHTT---SSCTTCEEEEESSCCHHHHTSGGGGGS-------------EEEEECCCEETTTTSE---------
T ss_pred HHHHHHHhhhhh---ccCCcCEEEEcCCCcHHHHHHHHHcCC-------------eEEEEEecCCcccCCC---------
Confidence 999998632110 002568899999999887443332221 233444321 1111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH-hcCCeEEEeccccCCCcccccccccccCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN-NYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|++++. +++.+|+++. ++|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|...+........+.
T Consensus 232 --~d~~~l~~~l~---~~~k~v~l~~-p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 304 (533)
T 3f6t_A 232 --IEPNEIEKLKD---PSIKALIVVN-PTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYN 304 (533)
T ss_dssp --ECHHHHHHHSC---TTEEEEEEES-SCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGG
T ss_pred --CCHHHHHHHhC---CCCeEEEEeC-CCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCC
Confidence 26788888774 3566666655 589999776 7777999999999 68999999999998865332211111222
Q ss_pred CcceeeeccccC-CCcccceeeeecHH-----HHHhhhc----------c----------------CCcccccccCCCCC
Q psy8199 483 WPDFLCLSKGIT-GGYLPLSLVMTTDK-----IYNSIYY----------K----------------NNINIFLHSHSYSG 530 (965)
Q Consensus 483 ~pDivt~sK~l~-gG~~pig~v~~~~~-----i~~~~~~----------~----------------~~~~~~~~~~t~~~ 530 (965)
...+.+|||.++ .| +++|+++++++ +++.+.. . ..........+.+.
T Consensus 305 ~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~ 383 (533)
T 3f6t_A 305 TMLVYSYSKLFGCTG-WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGL 383 (533)
T ss_dssp EEEEEESHHHHTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSC
T ss_pred EEEEecCcccCCCcc-cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCC
Confidence 344558999887 45 89999999876 4433210 0 00011223455566
Q ss_pred CHHHHHH----HHHHHH------HHh--cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCc-c-c
Q psy8199 531 NPLACCA----ALATLE------IFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDP-E-Q 595 (965)
Q Consensus 531 ~~~~~aa----a~a~L~------~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~-~-~ 595 (965)
+++++++ ++++|. ... .+...+.++++.+.+.+.|. + + +....+.|. +..+.+. .-. . .
T Consensus 384 ~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~---~-~~~~~~~~g~~~~~~l~-~~~~~~~ 457 (533)
T 3f6t_A 384 STPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A---P-KDETDTNTHYYSLIDIY-RLAEKIY 457 (533)
T ss_dssp CHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C---C-CCCSTTBCCSEEEEEHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C---C-ccccCCCceEEEEEehH-hhhhhcc
Confidence 7777766 444442 000 02245556666666766664 3 2 333334444 4444432 000 0 0
Q ss_pred hh---------hHHHHHHH-HHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 596 IE---------TFSKKFFV-AALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 596 ~~---------~~~~~~~~-~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.. .....+.. .+.++||++.|+ .+++|++.. .+++++++++++++.+++.+
T Consensus 458 g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 458 GKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence 00 01123434 445789998873 368999952 26899999999998776543
No 169
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.84 E-value=3.1e-20 Score=207.21 Aligned_cols=312 Identities=12% Similarity=0.005 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
.+|++++|+.+++.. + ......+...++.++++++++...+++++++||++|++.+++.+. .++++|+
T Consensus 12 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl 79 (352)
T 1iug_A 12 LHPKALEALARPQLH--H--RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVL 79 (352)
T ss_dssp CCHHHHHHHHSCCCC--T--TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEE
T ss_pred CCHHHHHHhccCCCC--c--cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--------CCCCeEE
Confidence 579999999877642 1 111123456789999999997666789999999999999999773 2568899
Q ss_pred EEcCCccCCccccc-cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 351 CLQNSYHGETLGAL-AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 351 ~~~~~yHg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
+.+++|++.....+ ...| ..+..+|.+.... .|+++|++ +++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~~~l~~------~~~~~v~~~~ 129 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAG------------LVVERLDYPYGDT------------PRPEDVAK------EGYAGLLLVH 129 (352)
T ss_dssp EEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCC------------CCTTTSCC------SSCSEEEEES
T ss_pred EEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCC------------CCHHHHhc------cCCcEEEEEE
Confidence 99999998741111 0011 1234444432110 13344443 2455677777
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMT 505 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~ 505 (965)
++|++|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+.... ..+|+++ ++|+++|+ .++|++++
T Consensus 130 -~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~G~~~~ 198 (352)
T 1iug_A 130 -SETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEA--MGVDAAASGSQKGLMCP-PGLGFVAL 198 (352)
T ss_dssp -EETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGG--GTCSEEEEESSSTTCCC-SCEEEEEE
T ss_pred -ecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccc--cCeeEEEecCcccccCC-CceeEEEE
Confidence 7999999887 89999999999 99999999996 5432 122222 2468775 46988775 46899999
Q ss_pred cHHHHHhhhccC-------Ccccc-cccCCCCCCHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHcccCCCcee
Q psy8199 506 TDKIYNSIYYKN-------NINIF-LHSHSYSGNPLACCAALATLEIFNKD--NILQRISQDMKKITKALTSLITHPKII 575 (965)
Q Consensus 506 ~~~i~~~~~~~~-------~~~~~-~~~~t~~~~~~~~aaa~a~L~~~~~~--~~~~~~~~~~~~l~~~L~~l~~~~~i~ 575 (965)
++++++.+..++ ..... ....+++.++.+++++.++|+.+.+. +..++++++.+++.+.|+++ ++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 274 (352)
T 1iug_A 199 SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLR 274 (352)
T ss_dssp CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCE
T ss_pred CHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCc
Confidence 998775421000 00000 01223456788888888999876543 56777788888888888765 233
Q ss_pred eeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 576 NFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 576 ~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+ .+.++.+.+. ++. ....+.+.|.++||.+.++ .+++|++++...++++++++++++.+.+
T Consensus 275 ~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 275 PVPKRFSPAVAAFYLP--EGV----PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp ESCSSBCTTCEEEECC--TTC----CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEEcC--CCC----CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 2222 4667777663 111 1346788899999999874 3799999998889999999999887654
No 170
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.84 E-value=5.1e-20 Score=212.33 Aligned_cols=342 Identities=9% Similarity=-0.013 Sum_probs=206.6
Q ss_pred ecCCcc-cccccccchhccCCCCCHHHHHHHHHHHhhcc----ccccCCCCcHHHHHHHHHHHhhc-CCC-----CCeEE
Q psy8199 250 TFSGKR-YLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLT-QYK-----LGHCF 318 (965)
Q Consensus 250 d~dG~~-ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~----~~~~~~~~~~~~~~la~~l~~~~-~~~-----~~~v~ 318 (965)
..|++. .+|+..|.+. -.+++|.+.+++++++..+. .....+.......++.+.+++++ +.. .++++
T Consensus 44 ~~~~~~~~i~l~~g~~~--d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 44 NADTNPKKVNLGVGAYR--DESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIA 121 (448)
T ss_dssp HHCCCTTCEEESSCCCC--CTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred HhCCCCCeEEeeccccc--CCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEE
Confidence 345554 6888776431 12334455555555522211 11111112223345555555554 433 47999
Q ss_pred E--cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc----cccCCcCccchhcccCCCeeEecCCCC-
Q psy8199 319 Y--GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL----AVTNIQSFKEIYTSLLNKTYIITTPDS- 391 (965)
Q Consensus 319 ~--~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (965)
+ |+||++|++.++.+.... .++++|++.+++|+++..... ..+ ..+..+|..+.
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G-------------~~v~~~~~~~~~ 182 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLW------MPKAEFYMPSTTWPNHYGIYDKVFNKLK-------------VPYKEYTYLRKD 182 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCTHHHHHHHHHHCTTT-------------SCCEEECCBCTT
T ss_pred EEECCcHHHHHHHHHHHHHHh------CCCCEEEECCCCCHhHHHHHHhhHHhCC-------------CeEEEEeccccc
Confidence 9 999999999876654433 356889999999987743322 221 23444454211
Q ss_pred -CCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 392 -RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 392 -~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
.+. .|+++|++++++.+.+.+++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|++
T Consensus 183 ~~~~-----------~d~e~l~~~l~~~~~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~ 249 (448)
T 3meb_A 183 GELE-----------IDFSNTKKDIQSAPEKSIFLFHAC-AHNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFAT 249 (448)
T ss_dssp SCSS-----------BCHHHHHHHHHHSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSS
T ss_pred cCCC-----------cCHHHHHHHHHhCCCCcEEEEeCC-CCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence 111 278899999986544456656555 589999765 778899999999999999999999999976
Q ss_pred ccc---ccccccc-CCCcce---eeeccccCCCcccceee--ee---------cH----HHHHhhhccCCcccccccCCC
Q psy8199 471 TGK---FFACEHA-EIWPDF---LCLSKGITGGYLPLSLV--MT---------TD----KIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 471 ~G~---~~~~~~~-~~~pDi---vt~sK~l~gG~~pig~v--~~---------~~----~i~~~~~~~~~~~~~~~~~t~ 528 (965)
.+. .+....+ +..+++ .+|||.++..++++|++ ++ ++ ++++.+.. .....+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~ 323 (448)
T 3meb_A 250 GSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL------QIRKTWS 323 (448)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH------HHHTTTS
T ss_pred CCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH------HHhcccC
Confidence 541 1222222 334563 36899887422899997 55 45 55555443 2233455
Q ss_pred CCCHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHHHcccCCCc------eeeeeceeEEEEEEEeecCcc
Q psy8199 529 SGNPLACCAALATLEIFN--------KDNILQRISQDMKKITKALTSLITHPK------IINFRQKGMIWAFDVIIEDPE 594 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~------i~~v~g~G~~~~i~~~~~~~~ 594 (965)
+.+.++++++.++|+... -+...++++++++++.+.|+++ ..++ +..+.+.+.++.+.-. +
T Consensus 324 ~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~--~-- 398 (448)
T 3meb_A 324 MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR-KTPGPGSKGTWDHILTAIGMFTFTGL--T-- 398 (448)
T ss_dssp SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSTTTCCCTHHHHCCSSEEECCC--C--
T ss_pred CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCcccccceeCCCceEEEecCC--C--
Confidence 667888888888775311 1335566777778888887665 1233 3334445555444211 1
Q ss_pred chhhHHHHHHHH-HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 595 QIETFSKKFFVA-ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 595 ~~~~~~~~~~~~-l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
. ++... +.++||++.|+.+ ||+.. .+++++++++++++.+++
T Consensus 399 -----~-~~~~~ll~~~gV~v~~G~g--Ris~a-~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 399 -----P-EHVDYLKEKWSIYLVKAGG--RMSMC-GLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp -----H-HHHHHHHHHHCEEECSGGG--EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred -----H-HHHHHHHHhCCEEEeCCCc--EEEEe-cCCHHHHHHHHHHHHHHH
Confidence 1 23344 4578999998543 88843 347778999998887644
No 171
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.84 E-value=3.6e-20 Score=211.85 Aligned_cols=327 Identities=10% Similarity=0.041 Sum_probs=214.2
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEE-EcCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 267 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCF-YGSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 267 ~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~-~~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
.+|+.++.+.+++.+++.+...........+...+++++++++++...+.++ +++||++|++.+++.+. .+
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~--------~~ 85 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI--------EP 85 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC--------CT
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc--------CC
Confidence 4666665566666666555311111112245578899999999986666665 89999999999998762 36
Q ss_pred ceEEEEEcCCccCCccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 346 KKKFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 346 ~~~vi~~~~~yHg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
+++|++.+++||+.... .....| ..+..+|.+... . .|+++|++++++. ++++
T Consensus 86 gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~-----------~d~~~l~~~i~~~--~~~~ 139 (416)
T 3isl_A 86 EDDVLIPIYGRFGYLLTEIAERYG------------ANVHMLECEWGT-V-----------FDPEDIIREIKKV--KPKI 139 (416)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTC-C-----------CCHHHHHHHHHHH--CCSE
T ss_pred CCEEEEecCCcccHHHHHHHHhcC------------CeeEEEecCCCC-C-----------CCHHHHHHHHhhC--CCcE
Confidence 78999999999983211 111111 134445543221 1 2688999998732 3567
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCccccee
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSL 502 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~ 502 (965)
|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... ...+|++++ +|+++|+ .++|+
T Consensus 140 v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~l~g~-~g~g~ 208 (416)
T 3isl_A 140 VAMVH-GETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVD--EWKIDAAIGGTQKCLSVP-SGMAP 208 (416)
T ss_dssp EEEES-EETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCCC-SSEEE
T ss_pred EEEEc-cCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchh--hcCCCEEEecCccccCCC-CCeEE
Confidence 77777 7999998887 8899999999999999999986 4322 12222 234677765 5887776 58999
Q ss_pred eeecHHHHHhhhccC-------------------Cccc------------cccc-CCCCCCHHHHHHHHHHHHHHhcc--
Q psy8199 503 VMTTDKIYNSIYYKN-------------------NINI------------FLHS-HSYSGNPLACCAALATLEIFNKD-- 548 (965)
Q Consensus 503 v~~~~~i~~~~~~~~-------------------~~~~------------~~~~-~t~~~~~~~~aaa~a~L~~~~~~-- 548 (965)
+++++++++.+.... .... .... ...+.+..+++++.++|+.+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (416)
T 3isl_A 209 ITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGL 288 (416)
T ss_dssp EEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred EEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 999999887765310 0000 0011 12245778888888888876543
Q ss_pred -cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCE
Q psy8199 549 -NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNT 620 (965)
Q Consensus 549 -~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~ 620 (965)
+..++.+++.+++.+.|+++ ....+... ...+.++.+.+. ++ .....+.+.|.++ ||.+.++ +++
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~L~~~~gi~v~~g~~~~~~~~ 361 (416)
T 3isl_A 289 ETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIP--GG----IDGESVRDMLLAQFGIEIASSFGPLAGKI 361 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECC--TT----CCHHHHHHHHHHHHCEECBCCCSTTTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCC--CC----CCHHHHHHHHHHhCCEEEecCCCCCCCCE
Confidence 57788888889999988774 22111111 112556666653 11 1134677888776 9999863 379
Q ss_pred EEEeCCcccCHHH-HHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNE-IQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~-i~~~~~~l~~~~ 645 (965)
+|++++...++++ ++++++++.+.+
T Consensus 362 iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 362 WRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCcHHHHHHHHHHHHHHH
Confidence 9999866666666 999999887654
No 172
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.84 E-value=2.2e-19 Score=203.77 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=194.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+++++++++++ .+.+++++||++|+..+++.+. .++++|++.++.||+..........
T Consensus 60 ~r~~~~~~~~l~~~la~~~g--~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~--- 126 (398)
T 1gc0_A 60 SRISNPTLNLLEARMASLEG--GEAGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIG--- 126 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGG---
T ss_pred cCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHH---
Confidence 45678889999999999996 3488888999999999999773 2567899999999886432211110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.....+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 127 ------~~g~~~~~~~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l 175 (398)
T 1gc0_A 127 ------EFGVKLRHVDM-----------------ADLQALEAAMT---PATRVIYFES-PANPNMHMAD----IAGVAKI 175 (398)
T ss_dssp ------GGTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ------HcCCEEEEECC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCccccc----HHHHHHH
Confidence 01112334433 26788888875 4688999999 8999999886 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccc-eeeeecHHHHH-hhhccCCccccccc-CCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHS-HSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pi-g~v~~~~~i~~-~~~~~~~~~~~~~~-~t~ 528 (965)
|++||+++|+||+|+.+ ..+... .++....+.+++|.+++++.|+ |++++++++++ .+.. ..++ .+.
T Consensus 176 ~~~~~~~li~D~~~~~~-~~~~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~------~~~~~~~~ 245 (398)
T 1gc0_A 176 ARKHGATVVVDNTYCTP-YLQRPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ------GLKDMTGA 245 (398)
T ss_dssp HGGGTCEEEEECTTTHH-HHCCGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT------HHHHHTCC
T ss_pred HHHcCCEEEEECCCccc-ccCCch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH------HhhccCCC
Confidence 99999999999999743 222211 2343333447899998765787 88888887665 3432 2233 345
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CC------ceee----eeceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HP------KIIN----FRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~------~i~~----v~g~G~~~~i~~~~~~~ 593 (965)
+.+|+++++++++|+.+. ...++..++.+++.+.|++... +| ++.. .++.|.++.+++. .
T Consensus 246 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~- 320 (398)
T 1gc0_A 246 VLSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK--G- 320 (398)
T ss_dssp CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET--T-
T ss_pred CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC--C-
Confidence 678999999888886542 3456666777777777765310 11 1111 1357888888874 1
Q ss_pred cchhhHHHHHHHHHHHcCcEEee---c----------------------------CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 594 EQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
. .....+.+.+.|+..+. + .+.+|+++++..++++++.+.+++.
T Consensus 321 ----~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~ 395 (398)
T 1gc0_A 321 ----G-IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395 (398)
T ss_dssp ----H-HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ----C-HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence 0 12344556667776543 1 2689999999999999998888775
Q ss_pred c
Q psy8199 643 Q 643 (965)
Q Consensus 643 ~ 643 (965)
+
T Consensus 396 ~ 396 (398)
T 1gc0_A 396 A 396 (398)
T ss_dssp H
T ss_pred h
Confidence 4
No 173
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.83 E-value=8.7e-20 Score=204.12 Aligned_cols=332 Identities=12% Similarity=0.058 Sum_probs=205.5
Q ss_pred cccccccccchhccCCCC-CHHHHHHHHHHHhhcc-cc-ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLE-HV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~-~~-~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
|+|+|..++ +.+||++ ||.+.+++.++++... .. .......+...+|+++++++++ .+..++++||++|+..+
T Consensus 3 ~~~~~~~~~--~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~--~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQ--TTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG--MDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHT--CSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT--CSEEEEESCHHHHHHHH
T ss_pred chhhhHHHh--hcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC--CCcEEEecCcHHHHHHH
Confidence 567774433 4566765 7888888888777632 11 1112234677899999999985 46667779999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++++... +.+.+|+.++.||.+........ ...+...++.|...+. .|+++
T Consensus 79 l~~~~~~-------gd~~~vi~~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~-----------~d~~~ 129 (357)
T 3lws_A 79 LRIWSDE-------TDNRTVAYHPLCHLEIHEQDGLK-----------ELHPIETILVGAADRL-----------MTLDE 129 (357)
T ss_dssp HHHHHHH-------HTCCEEEECTTCHHHHSSTTHHH-----------HHSSCEEEECSCTTSC-----------CCHHH
T ss_pred HHHHhhc-------CCCcEEEecccceeeeeccchhh-----------hccCcEEEEecCCCCC-----------cCHHH
Confidence 9987652 33325666666665432210000 0002222222211111 25677
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-----CCCcccccccccccCCCcc
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-----GCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----g~gr~G~~~~~~~~~~~pD 485 (965)
|+++ .+ +++|++++ ++|++|...++.+++++|.++|++||+++|+||+|. ++|+....+. ...|
T Consensus 130 l~~~----~~-~~~v~~~~-p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-----~~~d 198 (357)
T 3lws_A 130 IKAL----PD-IACLLLEL-PQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-----GLFD 198 (357)
T ss_dssp HHTC----CS-CSEEEEES-SBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----TTSS
T ss_pred HhcC----cC-cceEEEEc-ccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----hcCC
Confidence 7665 22 66778887 788874456689999999999999999999999875 1222211111 1234
Q ss_pred ee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 486 FL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 486 iv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
++ ++||+++|. ..|++++++++++.+..- .. ..+++.......++++.++|+... +..++..++.+++.+
T Consensus 199 ~~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~ 270 (357)
T 3lws_A 199 SIYISFYKGLGGI--AGAILAGPAAFCQTARIW---KR-RYGGDLISLYPYIVSADYYYELRK--DRMGQYYEQAKQLAE 270 (357)
T ss_dssp EEEEESSSTTCCS--SCEEEEECHHHHHHHHHH---HH-HTTCCCSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred EEEEeccccCCCC--ceEEEEcCHHHHHHHHHH---HH-HhcCCcccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44 899999653 227888899988877530 00 122233333444455667776532 224455777888888
Q ss_pred HHHcccCCCceee--eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC------CEEEEeCC---cccCHH
Q psy8199 564 ALTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------NTVYLMPP---YILNKN 632 (965)
Q Consensus 564 ~L~~l~~~~~i~~--v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~lR~~p~---~~~t~~ 632 (965)
.|+++ +++.. .++.+.++.+.+. .. .......+.+.|.++||+++|+. .++|++.. +..+.+
T Consensus 271 ~L~~~---~g~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~ 343 (357)
T 3lws_A 271 QFNAL---PGVHTTPEVPVSNMFHLHFD-GQ---AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQ 343 (357)
T ss_dssp HHHTS---TTEEEESSSCSSSEEEEEEE-SC---HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHH
T ss_pred HHHhC---CCCeeccCCCcceEEEEEec-CC---hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHH
Confidence 88764 55543 2456778877775 11 11124467788999999998642 37888754 346888
Q ss_pred HHHHHHHhhhcc
Q psy8199 633 EIQHMTSAIFQT 644 (965)
Q Consensus 633 ~i~~~~~~l~~~ 644 (965)
+++++++++.++
T Consensus 344 ~l~~al~~l~~a 355 (357)
T 3lws_A 344 TRDAGFARLRQA 355 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 899988887654
No 174
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.82 E-value=2.8e-19 Score=207.42 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=214.4
Q ss_pred CCCCCHHHHHHHHHHHhhcccccc---CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCC-
Q psy8199 268 FGHSNSYINKALKNQLNKLEHVML---SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF- 343 (965)
Q Consensus 268 lGh~~p~v~~av~~~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~- 343 (965)
.+|.+|++++++.++......+.. +.+..+...+++++++++++.+. .+++++||++|+..|+++++.+...+|.
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 457789999988876222111110 11123567888999999986332 4568899999999999998876555564
Q ss_pred CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEE
Q psy8199 344 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423 (965)
Q Consensus 344 ~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 423 (965)
+++++|++.+ .+|+....+....| ..++.+|.... +. .|+++|++++. ++++
T Consensus 154 ~~r~~Vlv~~-~~h~~~~~~~~~~G------------~~vv~v~~~~~-~~-----------~d~~~L~~~i~---~~t~ 205 (474)
T 1wyu_B 154 RTRRVVLVPD-SAHGSNPATASMAG------------YQVREIPSGPE-GE-----------VDLEALKRELG---PHVA 205 (474)
T ss_dssp TTCCEEEEET-TSCTHHHHHHHHTT------------CEEEEECBCTT-SS-----------BCHHHHHHHCS---TTEE
T ss_pred cCCCEEEEeC-CcChhhHHHHHHCC------------CEEEEecCCCC-CC-----------cCHHHHHHhhC---CCce
Confidence 4566888877 55666554433322 13445554321 11 26889998884 4588
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCC----Cc
Q psy8199 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITG----GY 497 (965)
Q Consensus 424 aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~g----G~ 497 (965)
+|++++ + |++|.+. +.+++|.++|++||+++|+||+|..+ ..|.. ....+ .+|++++ +|.+++ |+
T Consensus 206 ~v~~~~-p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 206 ALMLTN-P-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp EEEECS-S-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSC
T ss_pred EEEEEC-C-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCCC
Confidence 888887 5 5688762 22999999999999999999999632 23321 11122 3798876 897753 33
Q ss_pred ccceeeeecHHHHHhhhcc-----CCc--------ccccccCCCCCCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHH
Q psy8199 498 LPLSLVMTTDKIYNSIYYK-----NNI--------NIFLHSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKI 561 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~-----~~~--------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l 561 (965)
.++|++++++++++.+... +.. .......++++|+++++++.+.|+.+..+.+ .++..++.+++
T Consensus 277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999988766410 000 0000113445788999999999876544434 67788888999
Q ss_pred HHHHHcccCCCceeeeeceeEE--EEEEEeecCccchhhHHHHHHHHHHHcCcEEee------cCCEEEEeCCcccCHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMI--WAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------IGNTVYLMPPYILNKNE 633 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~--~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------~~~~lR~~p~~~~t~~~ 633 (965)
.+.|+++ . +..+.+.+.+ +.+.+. .+ .....+.+.|.++||.+.. ..+.+||+++...++++
T Consensus 357 ~~~L~~~-g---~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~ 426 (474)
T 1wyu_B 357 KELLKEK-G---YRVPYDGPSMHEFVAQPP--EG----FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKET 426 (474)
T ss_dssp HHHHHHT-T---CBCSSCSSCCSCEEEBCS--TT----CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHH
T ss_pred HHHHhhc-C---cEecCCCCcceEEEEEcC--CC----CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHH
Confidence 9988775 2 2211121222 233331 11 1144678889899997532 13689999998889999
Q ss_pred HHHHHHhhhccccc
Q psy8199 634 IQHMTSAIFQTFNE 647 (965)
Q Consensus 634 i~~~~~~l~~~~~~ 647 (965)
++++++++.+....
T Consensus 427 id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 427 LEAFAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998765543
No 175
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.82 E-value=2.4e-19 Score=204.18 Aligned_cols=329 Identities=11% Similarity=0.059 Sum_probs=208.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHh-hccc-cccCC-C-CcHHHHH----HHHHHHhhcCCCCCeEEEcCChh
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLN-KLEH-VMLSN-L-THKPVIK----LSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~-~~~~-~~~~~-~-~~~~~~~----la~~l~~~~~~~~~~v~~~~sGs 324 (965)
++.++|+.++ +++ +|++.+|+.+++. .... +.... + ..+...+ ++++++++++.. ...++++||+
T Consensus 23 ~~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt 95 (405)
T 2vi8_A 23 HAKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGA 95 (405)
T ss_dssp HHSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHH
T ss_pred hcceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcH
Confidence 3567787554 233 8999999999885 3211 11111 1 1233334 446888988643 2345567789
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccc--ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA--LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+|++.+++.+. .++++|++.+++|+++.... ....+. ......++.......
T Consensus 96 ~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~-------- 149 (405)
T 2vi8_A 96 QANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVDPETHV-------- 149 (405)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBCTTTCS--------
T ss_pred HHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccc----------eeEEEecccccccCC--------
Confidence 99999999873 25678999988765542111 111110 001222222101111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|++++.+. ++++|++.| . + .|...+ +++|+++|++||+++|+||+|+ +|+.+... ...++
T Consensus 150 ---~d~~~l~~~i~~~--~~~~v~~~~-~-~-~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~ 214 (405)
T 2vi8_A 150 ---IDYDDVREKARLH--RPKLIVAAA-A-A-YPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPV 214 (405)
T ss_dssp ---BCHHHHHHHHHHH--CCSEEEECC-S-S-CCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCST
T ss_pred ---cCHHHHHHHHHhc--CCeEEEEeC-C-C-CCccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCcc
Confidence 3678899888742 345677765 2 2 243333 8999999999999999999998 55543211 11122
Q ss_pred -Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhc---ccHHHHHH
Q psy8199 483 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK---DNILQRIS 555 (965)
Q Consensus 483 -~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~L~~~~~---~~~~~~~~ 555 (965)
.+|++ ++||+++|+ .. |++++++++++.+.. .....++++ ++..++++.++|+.+.+ ++..++++
T Consensus 215 ~~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~ 286 (405)
T 2vi8_A 215 PYAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDK------AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVV 286 (405)
T ss_dssp TTCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHh------hhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 47877 689999864 23 899999888887754 112233443 67777777888887654 45778888
Q ss_pred HHHHHHHHHHHcccCCCceeee--eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEE
Q psy8199 556 QDMKKITKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVY 622 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v--~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR 622 (965)
++++++.+.|+++ ++..+ .+.+.++.+.+. ..+ .....+.+.|.++||.+.++ .+.+|
T Consensus 287 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iR 357 (405)
T 2vi8_A 287 DNAKRLASALQNE----GFTLVSGGTDNHLLLVDLR-PQQ----LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIR 357 (405)
T ss_dssp HHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GGT----CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEE
T ss_pred HHHHHHHHHHHhC----CCeEecCCCCceEEEEEcc-CCC----CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceE
Confidence 8999999988775 23322 245777777764 110 01345778888999999873 25899
Q ss_pred EeCCc----ccCHHHHHHHHHhhhcccc
Q psy8199 623 LMPPY----ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 623 ~~p~~----~~t~~~i~~~~~~l~~~~~ 646 (965)
++++. .+++++++++++++.+.+.
T Consensus 358 is~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 358 IGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred EeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 99887 5789999999999876543
No 176
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.82 E-value=8.6e-19 Score=204.89 Aligned_cols=355 Identities=10% Similarity=0.087 Sum_probs=213.4
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC--CCcHHHHHHHHHHHhhcCCCC-CeEEEcCChhH
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN--LTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGAS 325 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGse 325 (965)
....+..|+|+..+ ++.+|.+++++...+-+.....+.. ...+...++.++++++++.+. +.++|++|||+
T Consensus 96 ~~~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 96 IFTQHPDCIAHLHT------PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp CCTTSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCCCeeEeCCC------CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 34566789998765 3467888888866543321111000 112233445666899886543 78999999999
Q ss_pred HHHHHHHHHHHHHH---------hcCCCC--ce-EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCC
Q psy8199 326 AVEVALKMSFHYWY---------NKGFLN--KK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 393 (965)
Q Consensus 326 A~~~Al~~a~~~~~---------~~g~~~--~~-~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (965)
||..|++++|.++. ..|.+. ++ .|++.+. .|.+...+....+. + ...+..+|.....
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~-~h~s~~~~~~~~g~-g--------~~~v~~v~~~~~~- 238 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKK-SHFTVQKSASWMGL-G--------EKAVMTVDANADG- 238 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETT-SCTHHHHHHHHTTS-C--------GGGEEEECBCTTS-
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCC-chHHHHHHHHHcCC-C--------cccEEEEecCCCC-
Confidence 99999999876432 123221 23 5555544 44443322222211 0 0134555543211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 394 INKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 394 ~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
. .|+++|+++|++. +....+|++.. .++++|.+.+ +++|.++|++||+++|+|++|.|+..
T Consensus 239 ~-----------~d~~~L~~~i~~~~~~~~~~~~vv~~~-~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~ 302 (497)
T 2qma_A 239 T-----------MDITKLDEVIAQAKAEGLIPFAIVGTA-GTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALI 302 (497)
T ss_dssp S-----------BCGGGHHHHHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred c-----------CCHHHHHHHHHHHHHCCCcceEEEEcC-CCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHH
Confidence 1 2577888888643 12244666665 5888898777 99999999999999999999998755
Q ss_pred ccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH-HHHhhhccCCccccc-ccCCCCCCHHHH----------
Q psy8199 471 TGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK-IYNSIYYKNNINIFL-HSHSYSGNPLAC---------- 535 (965)
Q Consensus 471 ~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~-i~~~~~~~~~~~~~~-~~~t~~~~~~~~---------- 535 (965)
... +.....++ .+|++++ +|.++++ +++|+++++++ .++.+... ..+. ...+...++.+.
T Consensus 303 ~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~---~~yl~~~~~~~~~~~~~~~~~~r~~~a 377 (497)
T 2qma_A 303 LSS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHH---ADYLNREHDELPNLVDKSIATTKRFDA 377 (497)
T ss_dssp GST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC-----------------------CCSCCCTH
T ss_pred hCc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCC---chhcCCccccCCCccccCCCCCCchhH
Confidence 444 33334466 7899876 8988877 58999988654 34444321 1111 111111222221
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 536 CAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 536 aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
.+..++|+.+..+ +..++..++.+++.+.|+++ +++..+ .+.+.++.+.+. ............+.+.+.++|
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~-~~~~~~~~l~~~l~~~l~~~G 453 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN---DQFELLAEPSLSTVLFRAT-HETADLDELNKALRLEALTRG 453 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC---TTEEECSCCSSSEEEEEEC-CSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEEEcCCCceEEEEEEc-CCccCHHHHHHHHHHHHHhCC
Confidence 1223445544332 45677778888888888764 444432 345667777775 211111223446778889999
Q ss_pred cEEeec----C-CEEEEeC-CcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPI----G-NTVYLMP-PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~----~-~~lR~~p-~~~~t~~~i~~~~~~l~~~~ 645 (965)
+++.+. + +++|+++ +..+++++++++++.+.+..
T Consensus 454 ~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 454 IAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp SCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 987642 2 5899997 88999999999999887543
No 177
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.82 E-value=5.1e-19 Score=206.52 Aligned_cols=330 Identities=14% Similarity=0.104 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHhhcc-----ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCC
Q psy8199 271 SNSYINKALKNQLNKLE-----HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGF 343 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~ 343 (965)
-++++++++.+++.... .|....+..+.+..+++.+.+..+ .+.+++++++||++|+..++++...
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------- 179 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR------- 179 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-------
Confidence 47788888888877631 222233445666777777766543 3567999999999999999987741
Q ss_pred CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CC
Q psy8199 344 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HN 420 (965)
Q Consensus 344 ~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~ 420 (965)
.+++.|++.+++|+++.......+. .+..++........ .|+++|++++++. +.
T Consensus 180 ~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------~d~~~l~~~l~~~~~~~~ 236 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYSASIALHGG-------------ALVPYYLNESTGWG----------LETSDVKKQLEDARSRGI 236 (500)
T ss_dssp STTEEEEEEESCCTHHHHHHHHTTC-------------EEEEEECBTTTTSB----------CCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCcHhHHHHHHHcCC-------------EEEEEecccccCCC----------CCHHHHHHHHHHHHhcCC
Confidence 1568899999999887544333322 22333332211111 3688888888652 22
Q ss_pred cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--ccccc----cccCC-C--ccee---e
Q psy8199 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFAC----EHAEI-W--PDFL---C 488 (965)
Q Consensus 421 ~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~----~~~~~-~--pDiv---t 488 (965)
++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.++...+ .+..+ ..++. . .+++ +
T Consensus 237 ~~k~ivl~~-p~NPtG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S 314 (500)
T 3tcm_A 237 NVRALVVIN-PGNPTGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQS 314 (500)
T ss_dssp EEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEE
T ss_pred CceEEEEEC-CCCCCcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEec
Confidence 455555444 488999766 67779999999999999999999998764432 12221 12221 1 2233 7
Q ss_pred ecccc-C-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----------HHh-cccHH
Q psy8199 489 LSKGI-T-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----------IFN-KDNIL 551 (965)
Q Consensus 489 ~sK~l-~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~-----------~~~-~~~~~ 551 (965)
|||++ | .| +++|++++ ++++++.+.. ....+++.++++++++.++|+ ..+ .+.+.
T Consensus 315 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (500)
T 3tcm_A 315 VSKGYYGECG-KRGGYFEITGFSAPVREQIYK-------IASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGIL 386 (500)
T ss_dssp SSSTTTCCGG-GCCEEEEEESCCTTHHHHHHH-------HHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHH
T ss_pred CCccCCCCCc-cceEEEEEeCCCHHHHHHHHH-------HHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHH
Confidence 89998 3 25 89999988 8888888765 123456678889888888875 222 13456
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch--------hhHHHHH-HHHHHHcCcEEeec-----
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI--------ETFSKKF-FVAALKNELLLRPI----- 617 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~--------~~~~~~~-~~~l~~~Gi~~~~~----- 617 (965)
++++++.+++.+.|+++ |++..+.++|.|+.+.-. ..+... ......+ .+.+.++||++.|+
T Consensus 387 ~~l~~~~~~l~~~L~~~---~g~~~~~~~g~~~~~~~~-~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~ 462 (500)
T 3tcm_A 387 ASLARRAKALEHAFNKL---EGITCNEAEGAMYVFPQI-CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ 462 (500)
T ss_dssp HHHHHHHHHHHHHHHTS---TTEECCCCCBTTEECCEE-CCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCcEEecCCeEEEEeeee-cCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC
Confidence 67777778888877664 677777777776655321 111000 0001122 35566789999873
Q ss_pred ---CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 ---GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 ---~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++|++.. .++++++++++++.+...
T Consensus 463 ~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 463 VPGTWHFRCTIL--PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp CTTCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 147999955 888899999999876543
No 178
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.82 E-value=7.4e-19 Score=198.61 Aligned_cols=306 Identities=13% Similarity=0.051 Sum_probs=200.4
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy8199 267 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 346 (965)
Q Consensus 267 ~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~ 346 (965)
.+.+.+++..+++.... . ..+....+.++...+++++++++.+ .+++++++||++|+..+++.+. .++
T Consensus 31 ~~~~~~~~~~~~~~~~~-~-~~~~y~~~~~~~~~~l~~~la~~~g--~~~~i~~~sG~~ai~~~~~~~~--------~~g 98 (389)
T 3acz_A 31 TFCFDSTQQGADLFMGK-G-EGHIYSRLGNPTVEQFEEMVCSIEG--AAGSAAFGSGMGAISSSTLAFL--------QKG 98 (389)
T ss_dssp BBCCSSHHHHHHHHTTC-S-SCCCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTTC--------CTT
T ss_pred ceecCChHHHHHhhcCC-C-CCcccCCCCChHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHh--------CCC
Confidence 35556665444433221 1 1223345678889999999999996 3488888999999999998663 256
Q ss_pred eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEE
Q psy8199 347 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426 (965)
Q Consensus 347 ~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii 426 (965)
++|++.++.||+....... ........+.+++. .|+++++++++ +++++|+
T Consensus 99 d~vl~~~~~y~~~~~~~~~---------~~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~ 149 (389)
T 3acz_A 99 DHLIAGDTLYGCTVSLFTH---------WLPRFGIEVDLIDT-----------------SDVEKVKAAWK---PNTKMVY 149 (389)
T ss_dssp CEEEEESSCCHHHHHHHHH---------HHHHTTCEEEEECT-----------------TCHHHHHHTCC---TTEEEEE
T ss_pred CEEEEeCCCchHHHHHHHH---------HHHHcCCEEEEECC-----------------CCHHHHHHhcC---CCCeEEE
Confidence 8899999999885322100 00111123344443 26788888774 4678999
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eee
Q psy8199 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLV 503 (965)
Q Consensus 427 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v 503 (965)
+|+ ++|++|.+.+ +++|.++|++||+++|+||+|+++. .+.. .+..+|++ +++|.++|++.++ |++
T Consensus 150 ~~~-~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~~-~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v 218 (389)
T 3acz_A 150 LES-PANPTCKVSD----IKGIAVVCHERGARLVVDATFTSPC-FLKP-----LELGADIALHSVSKYINGHGDVIGGVS 218 (389)
T ss_dssp EES-SCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCTT-TCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EEC-CCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcccc-ccCc-----cccCCeEEEECChhhccCCCCceeEEE
Confidence 999 8999999887 9999999999999999999998542 2222 23458888 6899998865787 999
Q ss_pred eecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCC
Q psy8199 504 MTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITH 571 (965)
Q Consensus 504 ~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~ 571 (965)
++++ ++++.+.. .....+.+.+|..++++++.|+.+. ...++..++.+.+.+.|++. ..+
T Consensus 219 ~~~~~~~~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~ 290 (389)
T 3acz_A 219 SAKTAEDIATIKF------YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESF 290 (389)
T ss_dssp EESSHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTS
T ss_pred EECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCC
Confidence 9998 88887754 1211233468888888888886542 12444555666666666543 112
Q ss_pred Ccee----eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee---c---------------------------
Q psy8199 572 PKII----NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP---I--------------------------- 617 (965)
Q Consensus 572 ~~i~----~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~--------------------------- 617 (965)
|++. ..++.|.++.+.+. + .....+.+.+.|+++++ +
T Consensus 291 ~~~~~~~~~~~g~g~~~~~~l~--~-------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~ 361 (389)
T 3acz_A 291 PGHDIAKKQMTGYGSTFLFEMK--S-------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGI 361 (389)
T ss_dssp TTHHHHHHHCSSCCSEEEEEES--S-------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTC
T ss_pred ccHHHHHhhCCCCCeEEEEEEC--C-------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCC
Confidence 2211 12456889998874 1 22344556677876654 1
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.+|+++....+++.++.+.+++
T Consensus 362 ~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 362 TPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp CTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CcCeEEEEeccCCHHHHHHHHHHHH
Confidence 268999987775555555555444
No 179
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.82 E-value=4.8e-20 Score=210.29 Aligned_cols=333 Identities=9% Similarity=0.007 Sum_probs=207.5
Q ss_pred cccccccccchhccCC-CCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC-----CCeEEE--cCChh
Q psy8199 254 KRYLDAISSWWVNLFG-HSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK-----LGHCFY--GSDGA 324 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-----~~~v~~--~~sGs 324 (965)
..+|||.+|. +++ ..+|.+.++++++.... ..|....+..+.+..+++.+. +.. .+++.+ +++|+
T Consensus 41 ~~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~---~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 41 KRKVNLSIGV---YRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCF---GPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SSCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHH---CSSCHHHHTTCEEEEEESHHH
T ss_pred cCceeeeeeE---EECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHc---CCCchhhccCceeeeecccch
Confidence 4688888763 323 35777888888773222 112112222334444444442 222 467754 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (965)
+|++.+..+++.+. .++++|++.+++|+++.......+. .+..+|.. ...+.
T Consensus 115 ga~~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~--------- 167 (409)
T 4eu1_A 115 GALRIGGDLLNRFV-----ANCNRIYGPDVGYPNHESIFAKAGM-------------ELTPYSYYDPATKG--------- 167 (409)
T ss_dssp HHHHHHHHHGGGTS-----SSCCEEEEESSCCTHHHHHHHHTTC-------------EEEEECCEETTTTE---------
T ss_pred HHHHHHHHHHHHhc-----CCCCEEEEeCCCcHhHHHHHHHcCC-------------eEEEEEeecCcCCc---------
Confidence 99999877665431 2458999999999887433332221 23334431 11111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---ccccc-c
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACE-H 479 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~-~ 479 (965)
.|+++|++++++.+...+++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ..... .
T Consensus 168 --~d~~~l~~~l~~~~~~~~~i~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (409)
T 4eu1_A 168 --LNLAGMLECLDKAPEGSVILVHAC-AHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHL 243 (409)
T ss_dssp --ECHHHHHHHHHHSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred --CcHHHHHHHHHhCCCCcEEEEECC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHH
Confidence 268899999976544556666544 489999766 777899999999999999999999999876552 22222 2
Q ss_pred cCCCccee---eeccccCCCcccceee---eecHH----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH----
Q psy8199 480 AEIWPDFL---CLSKGITGGYLPLSLV---MTTDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF---- 545 (965)
Q Consensus 480 ~~~~pDiv---t~sK~l~gG~~pig~v---~~~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~---- 545 (965)
.+..++++ +|||.++..++++|++ +++++ +++.+.. +...++++.++++++++.++|+..
T Consensus 244 ~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (409)
T 4eu1_A 244 VDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLAL------LIRPMYNNPPLYGAWVVSSILKDPQLTA 317 (409)
T ss_dssp HTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred HhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHH------HHhhhcCCCChHHHHHHHHHhCCHHHHH
Confidence 25556765 7899987422899995 66777 5554433 223455667889999998888632
Q ss_pred ---h-cccHHHHHHHHHHHHHHHHHcccCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecCC
Q psy8199 546 ---N-KDNILQRISQDMKKITKALTSLITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGN 619 (965)
Q Consensus 546 ---~-~~~~~~~~~~~~~~l~~~L~~l~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~ 619 (965)
+ -+...++++++.+++.+.|+++. .|. +....+.|.++.+.-. + . .+...+ .++||++.|++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~--~-------~-~~~~~ll~~~gv~v~p~~- 385 (409)
T 4eu1_A 318 LWKKELKQMSSRIAEVRKRLVSELKACG-SVHDWSHIERQVGMMAYTGL--T-------R-EQVELLRSEYHIYMTLNG- 385 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCSCCHHHHHSCSSEEECCC--C-------H-HHHHHHHHHHCEECCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcceecCCceEEEEeCC--C-------H-HHHHHHHHcCCEEEcCCC-
Confidence 1 23456677778888888887651 111 3434455555544211 1 1 233444 46799999863
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
||+.. ..++++++++++++.++
T Consensus 386 --Ri~~~-~~~~~~i~~~~~~l~~~ 407 (409)
T 4eu1_A 386 --RAAVS-GLNSTNVEYVSQAIHNV 407 (409)
T ss_dssp --EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --EEEEE-ecCHhhHHHHHHHHHHH
Confidence 66653 46677799999887653
No 180
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.82 E-value=1.8e-19 Score=201.78 Aligned_cols=311 Identities=12% Similarity=0.058 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+|+.+.+.. ...++.+...+++++++++++ .+..++++||++|+..+++++... ++..+|+
T Consensus 28 ~p~v~~ai~~~~~~-----~~~~~~~~~~~l~~~la~~~~--~~~~i~~~~g~~a~~~a~~~~~~~-------g~~~vvi 93 (359)
T 3pj0_A 28 LTEALQNIDDNLES-----DIYGNGAVIEDFETKIAKILG--KQSAVFFPSGTMAQQIALRIWADR-------KENRRVA 93 (359)
T ss_dssp HHHHTTTSCTTCBC-----CBTTBSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHHHH-------HTCCEEE
T ss_pred CHHHHHHHHhhccc-----CcccCCHHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHHhc-------CCCcEEE
Confidence 56777777663322 123456778899999999985 456677799999999999988762 4444666
Q ss_pred EcCCccCCcccc--c-cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 352 LQNSYHGETLGA--L-AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 352 ~~~~yHg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
.++.+|.+.... . ...+ .....+|.+ .+. .|+++|+++ .+++++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~--~~~-----------~d~~~l~~~----~~~~~~v~~~ 144 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLKELQQ------------ITPLLLGTA--NQL-----------LTIDDIKSL----REPVSSVLIE 144 (359)
T ss_dssp ECTTCHHHHSSTTHHHHHHC------------CEEEECSCT--TSC-----------CCHHHHHTC----SSCCSEEEEE
T ss_pred EeccceeeehhcchHHHhcC------------ceEEecCCc--CCC-----------cCHHHHHhc----cCCceEEEEE
Confidence 666666542211 1 1111 122233321 111 267777765 3457788888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc--ccccccccccCCCccee--eeccccCCCcccceeee
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVM 504 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~ 504 (965)
+ ++|++|...++.+++++|.++|++||+++|+||+|..+.. .|. ....+....|++ ++||+++++ .. |+++
T Consensus 145 ~-p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~ 219 (359)
T 3pj0_A 145 L-PQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQK--SAEEICALFDSVYVSFYKGIGGI-AG-AILA 219 (359)
T ss_dssp S-SBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTC--CHHHHHTTCSEEEEESSSTTCCS-SC-EEEE
T ss_pred e-cccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCC--CHHHhhccCCEEEEeccccCCCc-ce-EEEE
Confidence 7 6777755666889999999999999999999998753210 111 011111234666 788988775 23 6778
Q ss_pred ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee--eceeE
Q psy8199 505 TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF--RQKGM 582 (965)
Q Consensus 505 ~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v--~g~G~ 582 (965)
+++++++.+..- .....++++..++ .++++.++|+... +..++..++.+++.+.|+++ +++... +..+.
T Consensus 220 ~~~~l~~~~~~~---~~~~~~~~~~~~~-~~~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~ 290 (359)
T 3pj0_A 220 GNDDFVQEAKIW---KRRYGGDLISLYP-YILSADYYFEKRI--GKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSN 290 (359)
T ss_dssp ECHHHHHHHHHH---HHHTTCCCSCCHH-HHHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSS
T ss_pred CCHHHHHHHHHH---HHHhCCCcchhHH-HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC---CCceeeccCCcce
Confidence 899998877530 0011223333333 4445556676442 34566777888888888764 555432 35566
Q ss_pred EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------CEEEEeCC---cccCHHHHHHHHHhhhc
Q psy8199 583 IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------NTVYLMPP---YILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 583 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~---~~~t~~~i~~~~~~l~~ 643 (965)
++.+.+. .. .......+.+.|.++||+++|+. +++|++.. ...+.++++++++++.+
T Consensus 291 ~~~~~~~-~~---~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 291 MFHVYFE-NS---ADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp EEEEEES-SC---HHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEec-Cc---cchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence 6666664 11 11224567888999999998742 46888542 34678888888887754
No 181
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.81 E-value=6.1e-19 Score=196.35 Aligned_cols=328 Identities=12% Similarity=0.087 Sum_probs=208.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
++++||.++.. ++ .+|++.+++.+..... ...++.+...+|.++++++++ .+.+++++||++|+..+++.
T Consensus 3 ~~~i~~~~~~~--~~--p~~~~~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDTV--TK--PTEEMRKAMAQAEVGD----DVYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGGG--CC--CCHHHHHHHHTCCCCC----GGGTCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHH
T ss_pred ceEEEeccccC--CC--CCHHHHHHHhcCCCCC----cccCCChHHHHHHHHHHHHhC--CceEEEecCcHHHHHHHHHH
Confidence 46688877643 22 5788888886543211 122346677899999999985 56889999999999999876
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCcc-c-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETL-G-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+. .++++|++.+++|..... . .....| .....+ .+. .+. .|+++|
T Consensus 73 ~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~-~~~-----------~d~~~l 119 (347)
T 1jg8_A 73 HT--------QRGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGK-NGA-----------MDPDDV 119 (347)
T ss_dssp HC--------CTTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEE-TTE-----------ECHHHH
T ss_pred hc--------CCCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCC-CCc-----------cCHHHH
Confidence 53 256789998887643211 1 111111 112222 110 010 267888
Q ss_pred HHHHHhC---CCcEEEEEEccccccCC-CcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc---ccccccccccCCCc
Q psy8199 412 EILLKKN---HNKIAAIIIEPLVQCAG-GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR---TGKFFACEHAEIWP 484 (965)
Q Consensus 412 e~~l~~~---~~~~aaii~ep~v~~~~-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr---~G~~~~~~~~~~~p 484 (965)
++++++. ..++++|++++ ++|++ |. ..+.+.+++|.++|++||+++|+||+|. ++. .|. ....+....
T Consensus 120 ~~~i~~~~~~~~~~~~v~~~~-~~npt~G~-~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~ 194 (347)
T 1jg8_A 120 RKAIRPRNIHFPRTSLIAIEN-THNRSGGR-VVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYA 194 (347)
T ss_dssp HHHSCCSCTTSCCEEEEEEES-SBTTTTSB-CCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTC
T ss_pred HHHhccccccccCceEEEEec-cccccCCc-cCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhcccc
Confidence 8888631 12578888888 89998 65 4578889999999999999999999874 311 111 111111123
Q ss_pred ce--eeeccccCCCccccee-eeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 485 DF--LCLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 485 Di--vt~sK~l~gG~~pig~-v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
|. +++||++++ |+|+ +++++++++.+..- . ...++++..+++.++++.++|+...+ ..++..++.+++
T Consensus 195 d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l 265 (347)
T 1jg8_A 195 DSVMFCLSKGLCA---PVGSVVVGDRDFIERARKA---R-KMLGGGMRQAGVLAAAGIIALTKMVD--RLKEDHENARFL 265 (347)
T ss_dssp SEEEEESSSTTCC---SSCEEEEECHHHHHHHHHH---H-HHHTCCCSSTHHHHHHHHHHHHHSST--THHHHHHHHHHH
T ss_pred cEEEEecccccCC---CceEEEEcCHHHHHHHHHH---H-HHcCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 43 468999865 4674 56688787665320 0 01244555677777888888875322 234445677888
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHh
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
.+.|+++ ... +....+.|.++.+.+. ..+ .....+.+.|.++||.+++.+ +.+|++++..++++++++++++
T Consensus 266 ~~~L~~~-~~~-~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~ 338 (347)
T 1jg8_A 266 ALKLKEI-GYS-VNPEDVKTNMVILRTD-NLK----VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNI 338 (347)
T ss_dssp HHHHHHH-TCB-CCGGGCCSSEEEEECT-TSS----SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHhc-Cce-eccCCCcceEEEEEcc-ccc----CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 8888765 221 1112345667666653 111 113467788889999998864 7899999888999999999998
Q ss_pred hhccc
Q psy8199 641 IFQTF 645 (965)
Q Consensus 641 l~~~~ 645 (965)
+.+.+
T Consensus 339 l~~~l 343 (347)
T 1jg8_A 339 FEKLF 343 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 182
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.7e-19 Score=208.36 Aligned_cols=328 Identities=11% Similarity=0.034 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHHh-c
Q psy8199 270 HSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYN-K 341 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~~-~ 341 (965)
++++.+.+++.+++......+...+ ..+...+++++++++++.. .+.+++++||++|+..|+++++.+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999998877432221111 2344567888888888755 568999999999999999999876432 2
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
|. .+++|++..++|+++. .+....| ..++.+|.....+. .|+++|++++. ++
T Consensus 155 g~-~~~~Vi~~~~~h~~~~-~~~~~~G------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~---~~ 206 (497)
T 3mc6_A 155 GI-TEPEIIAPVTAHAGFD-KAAYYFG------------MKLRHVELDPTTYQ-----------VDLGKVKKFIN---KN 206 (497)
T ss_dssp CC-SSCEEEEETTSCHHHH-HHHHHSC------------CEEEEECBCTTTCS-----------BCTTTTGGGCC---SS
T ss_pred CC-CCceEEEeCCccHHHH-HHHHHcC------------CeEEEEecCcccCc-----------CCHHHHHHHHh---hC
Confidence 32 3467888777765542 2222222 13445554321111 25677887774 35
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-------cc--cccccccCCCcceeee--c
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-------GK--FFACEHAEIWPDFLCL--S 490 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-------G~--~~~~~~~~~~pDivt~--s 490 (965)
+++|+++. +++++|.+.+ +++|+++|++||+++|+||+|+|+.+. |. .+.....| .|++++ +
T Consensus 207 ~~~v~~~~-p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~~ 279 (497)
T 3mc6_A 207 TVLLVGSA-PNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDTH 279 (497)
T ss_dssp EEEEEEET-TCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEETT
T ss_pred CEEEEEEC-CCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECch
Confidence 78888888 7899999877 889999999999999999999865432 11 12233334 477765 4
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccC-----CCCC--CHHHHHHHHHHHHHHhc---ccHHHHHHHHHHH
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH-----SYSG--NPLACCAALATLEIFNK---DNILQRISQDMKK 560 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~-----t~~~--~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~ 560 (965)
|.+.+| .++|+++++++.+...... ......++ ++.+ +....++..++++.+.. .+..++..++.++
T Consensus 280 K~l~~~-~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~ 356 (497)
T 3mc6_A 280 KYGFAP-KGSSVIMYRNSDLRMHQYY--VNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMK 356 (497)
T ss_dssp TTTCCC-SSCEEEECSSHHHHTTTSC--CBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCC-CCceeEEecCHHHHhhhhc--ccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 876666 6899999887765543210 00001111 1111 12223444455554443 3456777788888
Q ss_pred HHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHH
Q psy8199 561 ITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~ 637 (965)
+.+.|++. .|++..+ .+.+.++.+... . .....+.+.|.++||.+.... +.+|++++ .++.++++++
T Consensus 357 l~~~L~~~--~~g~~~~~~~~~~~v~~~~~--~-----~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~ 426 (497)
T 3mc6_A 357 FKKYIQEN--IPDLDIMGNPRYSVISFSSK--T-----LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEI 426 (497)
T ss_dssp HHHHHHHS--CTTCEECSCCCSSEEEEECT--T-----TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHH
T ss_pred HHHHHHhc--CCCEEEecCCCeeEEEEeCC--C-----CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHH
Confidence 88888762 2444433 355666666432 1 114568889999999887643 56899988 7899999999
Q ss_pred HHhhhccc
Q psy8199 638 TSAIFQTF 645 (965)
Q Consensus 638 ~~~l~~~~ 645 (965)
++++.+++
T Consensus 427 ~~~L~~~l 434 (497)
T 3mc6_A 427 CDILRTTV 434 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 183
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.81 E-value=3.1e-19 Score=202.32 Aligned_cols=313 Identities=14% Similarity=0.126 Sum_probs=204.6
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+++.+++.... + ....+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++
T Consensus 35 ~~~~~~a~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~--~~~~i~~~~gt~al~~~l~~~~~-------~~gd~vl~ 101 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-I---SSVGRFIVEFEKAFADYCG--VKHAIACNNGTTALHLALVAMGI-------GPGDEVIV 101 (391)
T ss_dssp CSSHHHHHHHHHHHTC-C---SSCSHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCC-c---cCCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCcCEEEE
Confidence 3667788877776531 1 1356888999999999995 45999999999999999997721 35688999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++|++........+. .+.+++.....+. .|+++|++++. +++++|++
T Consensus 102 ~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~~~---~~~~~v~~---- 150 (391)
T 3dr4_A 102 PSLTYIASANSVTYCGA-------------TPVLVDNDPRTFN-----------LDAAKLEALIT---PRTKAIMP---- 150 (391)
T ss_dssp ESSSCTHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCGGGSGGGCC---TTEEEECC----
T ss_pred CCCchHHHHHHHHHCCC-------------EEEEEecCccccC-----------cCHHHHHHhcC---CCceEEEE----
Confidence 99999987544333221 2334443211111 15677777664 45666663
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT- 506 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~- 506 (965)
.+++|...+ +++|.++|++||+++|+||+|+ +|.. +.-...+..+|++++| |++++| +.|+++++
T Consensus 151 ~n~tG~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~ 220 (391)
T 3dr4_A 151 VHLYGQICD----MDPILEVARRHNLLVIEDAAEA-VGAT---YRGKKSGSLGDCATFSFFGNAIITTG--EGGMITTND 220 (391)
T ss_dssp BCGGGCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECBTTSSSCCB--SCEEEEESC
T ss_pred ECCCCChhh----HHHHHHHHHHcCCEEEEECccc-ccce---ECCeeecccCCEEEEECCCCCcCCcC--CeEEEEECC
Confidence 357787765 9999999999999999999997 3211 1112234446888777 999875 57777765
Q ss_pred HHHHHhhhc---cCCc-----ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee--
Q psy8199 507 DKIYNSIYY---KNNI-----NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN-- 576 (965)
Q Consensus 507 ~~i~~~~~~---~~~~-----~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~-- 576 (965)
+++++.+.. .+.. .....+..+..+++.+++++..++.++ ...++.+++.+++.+.|+++ .......
T Consensus 221 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 297 (391)
T 3dr4_A 221 DDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQKLARL-GNRVTKPHV 297 (391)
T ss_dssp HHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHGGG-TTSEECCCC
T ss_pred HHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CccccCcCC
Confidence 446554432 1100 001112335677888877777765443 46788888999999999876 2221111
Q ss_pred ---eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------------------------CCEEEEeCCcc
Q psy8199 577 ---FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------------------GNTVYLMPPYI 628 (965)
Q Consensus 577 ---v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------~~~lR~~p~~~ 628 (965)
....+.++.+.+. +. .......+.+.|.++||.++++ .+.+|+.++..
T Consensus 298 ~~~~~~~~~~~~i~~~--~~--~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~ 373 (391)
T 3dr4_A 298 ALTGRHVFWMYTVRLG--EG--LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAG 373 (391)
T ss_dssp CTTSCCCCSSEEEEEC--SS--CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTT
T ss_pred CCCCcceeEEEEEEEC--Cc--cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCC
Confidence 1222334555553 10 0111446888999999988764 14799999999
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
+++++++.+++++.+.+
T Consensus 374 ~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 374 LTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887643
No 184
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.81 E-value=4.5e-19 Score=199.69 Aligned_cols=306 Identities=13% Similarity=0.177 Sum_probs=200.0
Q ss_pred HHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcC
Q psy8199 275 INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 354 (965)
Q Consensus 275 v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~ 354 (965)
+.+++.+.+... ..++.+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++.++
T Consensus 21 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~~~~~~~-------~~gd~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTA-----DFTLGAELEKFEKRFAALHN--APHAIGVGTGTDALAMSFKMLNI-------GAGDEVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHT-----CCSSCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEESS
T ss_pred HHHHHHHHHHcC-----CcccChhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCCCEEEECCC
Confidence 666666666543 23457788999999999995 45899999999999999987621 35689999999
Q ss_pred CccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccC
Q psy8199 355 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA 434 (965)
Q Consensus 355 ~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~ 434 (965)
+||+........+ ..+..++.... +. .|+++|++++. +++++|+ | +|+
T Consensus 87 ~~~~~~~~~~~~g-------------~~~~~~~~~~~-~~-----------~d~~~l~~~~~---~~~~~v~--~--~n~ 134 (374)
T 3uwc_A 87 TFIASVGAIVQAG-------------ATPVLVDSENG-YV-----------IDPEKIEAAIT---DKTKAIM--P--VHY 134 (374)
T ss_dssp SCHHHHHHHHHTT-------------CEEEEECBCTT-SS-----------BCGGGTGGGCC---TTEEEEC--C--BCG
T ss_pred ccHHHHHHHHHcC-------------CEEEEEecCCC-CC-----------cCHHHHHHhCC---CCceEEE--E--eCC
Confidence 9998743332222 12334443211 11 15677777664 3566666 6 567
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCC-CcccceeeeecH-H
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMTTD-K 508 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~g-G~~pig~v~~~~-~ 508 (965)
+|.+.+ +++|.++|++||+++|+||+|+.+.. +.....+..+|++++| |++++ | ..|++++++ +
T Consensus 135 ~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g--~~g~~~~~~~~ 204 (374)
T 3uwc_A 135 TGNIAD----MPALAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS--DAGVIITHSDE 204 (374)
T ss_dssp GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS--CCEEEEESCHH
T ss_pred cCCcCC----HHHHHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc--eeEEEEeCCHH
Confidence 888776 99999999999999999999973322 3334455557999887 99987 6 267777654 5
Q ss_pred HHHhhhc---cCCcccc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-CCceeeee-ce
Q psy8199 509 IYNSIYY---KNNINIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFR-QK 580 (965)
Q Consensus 509 i~~~~~~---~~~~~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~i~~v~-g~ 580 (965)
+++.+.. .+....+ ..+.++..+++.+++++..++.+ +++.++.+++.+++.+.|.++.. ........ +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 282 (374)
T 3uwc_A 205 YAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVY 282 (374)
T ss_dssp HHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEE
T ss_pred HHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCc
Confidence 6554432 1100011 12334456777777776665443 34677888888888888876622 11000111 11
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----------------------------CEEEEeCCcccCHH
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------------------------NTVYLMPPYILNKN 632 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------------------------~~lR~~p~~~~t~~ 632 (965)
..++.+.+... ....+.+.|.++||.+++.. +.+|++++..++++
T Consensus 283 ~~~~~~~~~~~-------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~e 355 (374)
T 3uwc_A 283 HVFHIYVLRVK-------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEE 355 (374)
T ss_dssp CCCSSEEEEET-------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHH
T ss_pred eeeEEEEEEcC-------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHH
Confidence 22222222201 14467888999999887643 68999999999999
Q ss_pred HHHHHHHhhhccc
Q psy8199 633 EIQHMTSAIFQTF 645 (965)
Q Consensus 633 ~i~~~~~~l~~~~ 645 (965)
+++++++++.+.+
T Consensus 356 di~~~~~~l~~~l 368 (374)
T 3uwc_A 356 EINYIIKKVREFY 368 (374)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 185
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.80 E-value=9e-19 Score=199.21 Aligned_cols=340 Identities=10% Similarity=-0.007 Sum_probs=206.1
Q ss_pred ccccccccchhccCCCC--CHHHHHHHHHHHhh-c-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE--cCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHS--NSYINKALKNQLNK-L-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~-~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sGseA 326 (965)
..+|+..|......++. .|.+.+++.+.+.. . ..|....+..+.+..+++.+....+ ...+++++ |+||++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 46787776542333433 35778887766553 1 1222223344555666666654432 12678877 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (965)
+..++++++.+. .++++|++.+++|+++.......+. .+..+|... ..+.
T Consensus 109 l~~~~~~l~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------- 159 (401)
T 7aat_A 109 LRVGANFLQRFF-----KFSRDVYLPKPSWGNHTPIFRDAGL-------------QLQAYRYYDPKTCS----------- 159 (401)
T ss_dssp HHHHHHHHHHHC-----TTCCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEETTTTE-----------
T ss_pred HHHHHHHHHHhc-----cCCCEEEEcCCCchhHHHHHHHcCC-------------eeEeeeeeccccCc-----------
Confidence 999998776442 2468899999999887433322221 233333311 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---ccccccc-C
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEHA-E 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~ 481 (965)
.|++++++.+++..+++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ......+ +
T Consensus 160 ~d~~~l~~~l~~~~~~~~~v~i~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 237 (401)
T 7aat_A 160 LDFTGAMEDISKIPEKSIILLHAC-AHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE 237 (401)
T ss_dssp ECHHHHHHHHTTSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh
Confidence 256777777765545667777777 799999865 778899999999999999999999998876542 2222221 3
Q ss_pred CCcce---eeeccccCCCcccceeeee---cHHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-------
Q psy8199 482 IWPDF---LCLSKGITGGYLPLSLVMT---TDKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI------- 544 (965)
Q Consensus 482 ~~pDi---vt~sK~l~gG~~pig~v~~---~~~i----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~------- 544 (965)
..+++ .+|||.++..++++|++++ +++. ...+.. .....+.+.+.++++++.+.|+.
T Consensus 238 ~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (401)
T 7aat_A 238 QGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKI------LIRPMYSNPPMNGARIASLILNTPELRKEW 311 (401)
T ss_dssp TTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred cCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHH------HHHhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence 33454 3789988743389999775 5553 333322 22233444556666666555531
Q ss_pred Hh-cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEE
Q psy8199 545 FN-KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL 623 (965)
Q Consensus 545 ~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~ 623 (965)
.+ -+...++++++.+++.+.|+++...+.+....+.|.++.+.-. + .+.+...+.++||.+.+. +||
T Consensus 312 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~ll~~~gi~v~~~---~Ri 379 (401)
T 7aat_A 312 LVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL--K-------PEQVERLTKEFSIYMTKD---GRI 379 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC--C-------HHHHHHHHHHHCEECCTT---CEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCC--C-------HHHHHHHHHhCCEeccCC---CeE
Confidence 01 1235567777888888888765211234444455555544211 1 223334456789999864 578
Q ss_pred eCCcccCHHHHHHHHHhhhcc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+.+. +++++++++++++.++
T Consensus 380 s~~~-~~~~~i~~~~~~l~~~ 399 (401)
T 7aat_A 380 SVAG-VASSNVGYLAHAIHQV 399 (401)
T ss_dssp EGGG-CCTTTHHHHHHHHHHH
T ss_pred Eecc-CChhhHHHHHHHHHHH
Confidence 8553 4556699999887653
No 186
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.80 E-value=5.1e-19 Score=199.16 Aligned_cols=310 Identities=14% Similarity=0.083 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
|++.+++.+++... ..+..+...++.+.++++++ .++++|++||++|++.+++.+.. .++++|++.
T Consensus 17 ~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~i~~~sgt~al~~~l~~l~~-------~~gd~Vi~~ 82 (373)
T 3frk_A 17 YEIKFKFEEIYKRN-----WFILGDEDKKFEQEFADYCN--VNYCIGCGNGLDALHLILKGYDI-------GFGDEVIVP 82 (373)
T ss_dssp HHHHHHHHHHHHHT-----CCSSSHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHHCC-----CccCCchHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcCC-------CCcCEEEEC
Confidence 44455555554442 12456788999999999995 46999999999999999987621 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.++|++........+. .+.+++.....+. .|+++|++++. +++++|+ | +
T Consensus 83 ~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~l~---~~~~~v~--~--~ 131 (373)
T 3frk_A 83 SNTFIATALAVSYTGA-------------KPIFVEPDIRTYN-----------IDPSLIESAIT---EKTKAII--A--V 131 (373)
T ss_dssp TTSCTHHHHHHHHHSC-------------EEEEECEETTTTE-----------ECGGGTGGGCC---TTEEEEE--E--E
T ss_pred CCCcHHHHHHHHHcCC-------------EEEEEeccccccC-----------cCHHHHHHhcC---CCCeEEE--E--E
Confidence 9999886433222211 2233332211111 15677777664 3567776 4 4
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCC-Ccccceeeeec-
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMTT- 506 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~g-G~~pig~v~~~- 506 (965)
+++|...+ +++|.++|++||+++|+||+|+ +|. .+.....+..+|++++| |++++ | ..|+++++
T Consensus 132 n~~G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~---~~~~~~~~~~~d~~~~S~~~~K~l~~~g--~gg~~~~~~ 201 (373)
T 3frk_A 132 HLYGQPAD----MDEIKRIAKKYNLKLIEDAAQA-HGS---LYKGMKVGSLGDAAGFSFYPAKNLGSLG--DGGAVVTND 201 (373)
T ss_dssp CCTTCCCC----HHHHHHHHHHHTCEEEEECTTC-TTC---EETTEETTSSSSEEEEECCTTSSSCCSS--SCEEEEESC
T ss_pred CCCcCccc----HHHHHHHHHHcCCEEEEECCcc-cCC---EECCEeccccccEEEEeCcCCCccCccc--eeEEEEeCC
Confidence 57887766 9999999999999999999997 322 12333455557999887 99987 5 36777775
Q ss_pred HHHHHhhhc---cCCc---ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-CCCceeeeec
Q psy8199 507 DKIYNSIYY---KNNI---NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQ 579 (965)
Q Consensus 507 ~~i~~~~~~---~~~~---~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~v~g 579 (965)
+++++.+.. .+.. .....+.++..++++++++++.++.++ ...++.+++.+++.+.|+++. ..+.... ..
T Consensus 202 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 278 (373)
T 3frk_A 202 KDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYIAGINNPNVIIPVEAD-YA 278 (373)
T ss_dssp HHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHCCCTTEECCCCCT-TE
T ss_pred HHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCceEeccCCC-CC
Confidence 446554432 1111 111234456678888888777776443 467777888888888876651 1111000 01
Q ss_pred eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----------------------------CEEEEeCCcccCH
Q psy8199 580 KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------------------------NTVYLMPPYILNK 631 (965)
Q Consensus 580 ~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------------------------~~lR~~p~~~~t~ 631 (965)
...++.+.+...+ ...+.+.|.++||.+++.. +.+|++....+|+
T Consensus 279 ~~~~~~~~~~~~~-------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ 351 (373)
T 3frk_A 279 KHVWYTFVIRSEK-------RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKN 351 (373)
T ss_dssp ECCCSSEEEEESS-------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCH
T ss_pred ceeeEEEEEEeCC-------HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCH
Confidence 1222222222111 4468889999999887321 5799999999999
Q ss_pred HHHHHHHHhhhccccc
Q psy8199 632 NEIQHMTSAIFQTFNE 647 (965)
Q Consensus 632 ~~i~~~~~~l~~~~~~ 647 (965)
++++.+++.+.+...+
T Consensus 352 ~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 352 EEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999876544
No 187
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.80 E-value=1.5e-19 Score=206.96 Aligned_cols=336 Identities=12% Similarity=0.098 Sum_probs=195.8
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc---ccc----cCCCCcHHHHHHH-HHHHhhcCCCCCeEEEc
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---HVM----LSNLTHKPVIKLS-EKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~---~~~----~~~~~~~~~~~la-~~l~~~~~~~~~~v~~~ 320 (965)
++.+++++.|....+++.++ .||+|++|+.+++.+.. +.. ......+...+++ +++++.++...+.+ ++
T Consensus 22 ~~~~~~~~~~~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~ 98 (420)
T 3gbx_A 22 MEQEKVRQEEHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QP 98 (420)
T ss_dssp HHHHHHHHHHSEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CC
T ss_pred HHHHHHhhhcceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-Ee
Confidence 34455666666555544443 69999999999885421 100 0111223445544 67888886433334 45
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc--cccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL--AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+||++|++.|++.+. .+++.|++.++.|++...... ...+ .......++.... +.
T Consensus 99 ~sGs~a~~~a~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~-~~---- 155 (420)
T 3gbx_A 99 HSGSQANFAVYTALL--------QPGDTVLGMNLAQGGHLTHGSPVNFSG----------KLYNIVPYGIDES-GK---- 155 (420)
T ss_dssp SSHHHHHHHHHHHHC--------CTTCEEEEEEEC------------CHH----------HHSEEEEEEECTT-CS----
T ss_pred cCcHHHHHHHHHHhc--------CCCCEEEecchhhcceeccchhhhhcc----------cceeEEeccCCcc-CC----
Confidence 778999999998774 256788888877755321111 1111 0001111121111 11
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFAC 477 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~ 477 (965)
.|+++|++++++. ++++|++++ .++ |...+ +++|+++|++||+++|+||+|. |+.+.|.....
T Consensus 156 -------~d~~~l~~~i~~~--~~~~v~~~~-~~~--~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~ 219 (420)
T 3gbx_A 156 -------IDYDEMAKLAKEH--KPKMIIGGF-SAY--SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP 219 (420)
T ss_dssp -------CCHHHHHHHHHHH--CCSEEEECC-TTC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS
T ss_pred -------cCHHHHHHHHHhc--CCeEEEEec-Ccc--CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc
Confidence 3788999998753 356667744 233 33444 8999999999999999999974 44333432211
Q ss_pred cccCCCcceee--eccccCCCcccceeeeecH---HHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhc---c
Q psy8199 478 EHAEIWPDFLC--LSKGITGGYLPLSLVMTTD---KIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---D 548 (965)
Q Consensus 478 ~~~~~~pDivt--~sK~l~gG~~pig~v~~~~---~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~~~---~ 548 (965)
.. .+|+++ +||+++| .+.|++++++ ++.+.+.. ..+.++++++ ...++++.+++....+ +
T Consensus 220 --~~-~~di~~~s~sK~~~g--~~gg~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~ 288 (420)
T 3gbx_A 220 --VP-HAHVVTTTTHKTLAG--PRGGLILAKGGDEELYKKLNS------AVFPSAQGGPLMHVIAGKAVALKEAMEPEFK 288 (420)
T ss_dssp --TT-TSSEEEEESSGGGCS--CSCEEEEESSCCHHHHHHHHH------HHC----CCCCHHHHHHHHHHHHHTTSHHHH
T ss_pred --cc-cCCEEEeecccCCCC--CCceEEEEcCCcHHHHHHhhh------hcCCCCCCCcchhHHHHHHHHHHHHHhHhHH
Confidence 11 288887 6799975 3458888887 77776654 1233333333 3344444445543322 3
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------c--
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------I-- 617 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~-- 617 (965)
+..++++++.+++.+.|.+. ++..+. ..+.++.+.+. .. ......+.+.|.++||++.+ .
T Consensus 289 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 359 (420)
T 3gbx_A 289 VYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFLLDLV-DK----NLTGKEADAALGRANITVNKNSVPNDPKSP 359 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GG----TCCHHHHHHHHHHTTEECEEECCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEEEEcC-CC----CCCHHHHHHHHHHCCcEeccccCCCCcccc
Confidence 45788888888898888763 343333 35667777664 11 11134566778889999987 1
Q ss_pred --CCEEEEeCCcc----cCHHHHHHHHHhhhcccc
Q psy8199 618 --GNTVYLMPPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 --~~~lR~~p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
.+.+||+++.. +++++++++++.+.+++.
T Consensus 360 ~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 360 FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 14699998876 458999999988876543
No 188
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.80 E-value=1.1e-18 Score=196.96 Aligned_cols=240 Identities=11% Similarity=0.055 Sum_probs=167.6
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
++.+.++...+|+++++++.+ .+.+++++||++|++++++++ .++++|++.++.|||........+
T Consensus 61 y~r~~~p~~~~l~~~la~l~g--~~~~~~~~sG~~Ai~~~~~l~---------~~gd~Vi~~~~~y~~~~~~~~~~~--- 126 (400)
T 3nmy_A 61 YSRTHNPTRFAYERCVAALEG--GTRAFAFASGMAATSTVMELL---------DAGSHVVAMDDLYGGTFRLFERVR--- 126 (400)
T ss_dssp BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHTH---
T ss_pred cccCCCHHHHHHHHHHHHHhC--CCCEEEecCHHHHHHHHHHHc---------CCCCEEEEeCCCchHHHHHHHHhh---
Confidence 356788999999999999985 458899999999999854433 356789999999987532221110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|++
T Consensus 127 -----~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~e~-~~np~G~~~~----l~~i~~ 176 (400)
T 3nmy_A 127 -----RRTAGLDFSFVDL-----------------TDPAAFKAAIR---ADTKMVWIET-PTNPMLKLVD----IAAIAV 176 (400)
T ss_dssp -----HHHHCCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred -----HhhcCeEEEEECC-----------------CCHHHHHHHhc---cCCCEEEEEC-CCCCCCeeec----HHHHHH
Confidence 1111223444443 26788888874 4689999999 9999999886 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCccccee--ee-ecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL--VM-TTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~--v~-~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|++||+++|+||+|+. +..+....+|..+.+.+++|.++|++.++|+ ++ .++++++.+.. +.+..+
T Consensus 177 la~~~g~~livDe~~~~----~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~------~~~~~g 246 (400)
T 3nmy_A 177 IARKHGLLTVVDNTFAS----PMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF------LQNSIG 246 (400)
T ss_dssp HHHHTTCEEEEECTTTH----HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH------HHHHHC
T ss_pred HHHHcCCEEEEECCCcc----cccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH------HHHhcC
Confidence 99999999999999862 1111112234333344589999986567755 33 36777777654 234455
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee------------------eceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------------~g~G~~~~i~~~ 589 (965)
...+|+.++.++..|+.+.. ..++..++.+++.+.|++ +|.+..| +|.|.|++|++.
T Consensus 247 ~~~~~~~a~~~l~~l~~l~~--r~~~~~~~a~~l~~~L~~---~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 247 GVQGPFDSFLALRGLKTLPL--RMRAHCENALALAQWLET---HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp CBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTT---CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred CCCCHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHHHHHc---CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 67789998888888865532 355666677777777654 3555444 778999999985
No 189
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.5e-18 Score=196.95 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=177.5
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+|+++++++.+ .+.+++++||++|++.+++.+. .++++||+.++.||++......
T Consensus 75 y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~----- 139 (414)
T 3ndn_A 75 YSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSE----- 139 (414)
T ss_dssp BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHT-----
T ss_pred cCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHH-----
Confidence 456788999999999999985 5789999999999999998763 2568899999999986321111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.+......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|++
T Consensus 140 ----~~~~~g~~~~~v~~-----------------~d~~~l~~ai~---~~t~~v~le~-p~NptG~~~~----l~~i~~ 190 (414)
T 3ndn_A 140 ----ILPRWGVQTVFVDG-----------------DDLSQWERALS---VPTQAVFFET-PSNPMQSLVD----IAAVTE 190 (414)
T ss_dssp ----HHHHTTCEEEEECT-----------------TCHHHHHHHTS---SCCSEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred ----HHHHcCcEEEEeCC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCCcccc----HHHHHH
Confidence 01112223455544 26788888885 3567888898 8999998876 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCC-CcccceeeeecHHHHH-hhhccCCcccccccCCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYN-SIYYKNNINIFLHSHSY 528 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~g-G~~pig~v~~~~~i~~-~~~~~~~~~~~~~~~t~ 528 (965)
+|++||+++|+||+|+ +|..+....+|....+.+++|.+++ |.+++|+++++++.+. .+... ...++.+
T Consensus 191 la~~~g~~livDe~~~----~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~----~~~~g~~- 261 (414)
T 3ndn_A 191 LAHAAGAKVVLDNVFA----TPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL----MRHTGPA- 261 (414)
T ss_dssp HHHHTTCEEEEECTTT----HHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHH----HHHHCCC-
T ss_pred HHHHcCCEEEEECCCc----ccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHH----HHHcCCC-
Confidence 9999999999999986 2322222234543444468899988 4368899999887765 44320 0112333
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCce----------eeeeceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKI----------INFRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i----------~~v~g~G~~~~i~~~~~~~ 593 (965)
.+|..+++++..++.+. ...++..++.+++.+.|++.. .+|++ ...+|.|.|++|++. +..
T Consensus 262 -~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~-~~~ 337 (414)
T 3ndn_A 262 -MSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALD-CPE 337 (414)
T ss_dssp -CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEEC-SCG
T ss_pred -CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEc-CCc
Confidence 47787777777766543 235566677777777776541 12221 123567999999985 110
Q ss_pred cchhhHHHHHHHHHHHcCcEEe
Q psy8199 594 EQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
......+..+.+.|...++.+.
T Consensus 338 ~~~~~~~~~~~~~l~~~~~~~s 359 (414)
T 3ndn_A 338 DVAKQRAFEVLDKMRLIDISNN 359 (414)
T ss_dssp GGHHHHHHHHHHHCSSSEECSC
T ss_pred cccHHHHHHHHHhCccceEcCC
Confidence 0001224456666665555443
No 190
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.79 E-value=1.6e-18 Score=194.65 Aligned_cols=304 Identities=15% Similarity=0.121 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
|++.+++.+++... ..+..+...++++.++++++ .+++++++||++|++.|++.+.. .++++|++.
T Consensus 16 ~~v~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~~~~~sGt~al~~al~~~~~-------~~gd~Vi~~ 81 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG-----QYILGPEVTELEDRLADFVG--AKYCISCANGTDALQIVQMALGV-------GPGDEVITP 81 (367)
T ss_dssp HHHHHHHHHHHHHC-----CCSSCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHhcC-----CccCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhCC-------CCcCEEEEC
Confidence 45555555555442 22356788899999999995 45999999999999999997731 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.++|++........+. .+.+++.....+. .|+++|++++. +++++|+ | .
T Consensus 82 ~~~~~~~~~~~~~~G~-------------~~~~~~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~--~--~ 130 (367)
T 3nyt_A 82 GFTYVATAETVALLGA-------------KPVYVDIDPRTYN-----------LDPQLLEAAIT---PRTKAII--P--V 130 (367)
T ss_dssp SSSCTHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCGGGTGGGCC---TTEEEEC--C--B
T ss_pred CCccHHHHHHHHHcCC-------------EEEEEecCCccCC-----------cCHHHHHHhcC---cCCcEEE--e--e
Confidence 9999887544333222 2334443321111 25677777763 4677777 4 4
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec----cccCC-Ccccceeeee-
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMT- 505 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s----K~l~g-G~~pig~v~~- 505 (965)
+++|...+ +++|.++|++||+++|+||+|+ |....|. ..+...|++++| |.+++ | . .|++++
T Consensus 131 ~~~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g-~-gg~~~~~ 199 (367)
T 3nyt_A 131 SLYGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYG-D-GGAIFTN 199 (367)
T ss_dssp CGGGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS-C-CEEEEES
T ss_pred CCccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcC-c-eeEEEeC
Confidence 46676655 9999999999999999999997 2222222 222233898886 99988 6 2 677777
Q ss_pred cHHHHHhhhcc---CCccc---ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceee-e
Q psy8199 506 TDKIYNSIYYK---NNINI---FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIIN-F 577 (965)
Q Consensus 506 ~~~i~~~~~~~---~~~~~---~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~-v 577 (965)
++++++.+..- +.... ...+.++..+++.++++++.++.++ ...++.+++.+++.+.|+++ ...+.... .
T Consensus 200 ~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 277 (367)
T 3nyt_A 200 DDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFE--EEIALRQKVAAEYDLSLKQVGIGTPFIEVNN 277 (367)
T ss_dssp CHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTCCCCCCCTTE
T ss_pred CHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCeeccCCCCCC
Confidence 46776655431 10000 1124578889999999999987653 46788888899999999876 12221111 0
Q ss_pred eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------------------------CEEEEeCCcccCHH
Q psy8199 578 RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------------------------NTVYLMPPYILNKN 632 (965)
Q Consensus 578 ~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------------------~~lR~~p~~~~t~~ 632 (965)
.....++.+.+. + .+.+.+.|.++||.+++.. ..+|+.....++++
T Consensus 278 ~~~~~~~~~~~~--~-------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~ 348 (367)
T 3nyt_A 278 ISVYAQYTVRMD--N-------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTA 348 (367)
T ss_dssp ECCCSSEEEECS--S-------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHH
T ss_pred ceeeEEEEEEeC--C-------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHH
Confidence 111112222221 1 4467888999999776311 36788877888889
Q ss_pred HHHHHHHhhhc
Q psy8199 633 EIQHMTSAIFQ 643 (965)
Q Consensus 633 ~i~~~~~~l~~ 643 (965)
+++.+++.+.+
T Consensus 349 ~i~~v~~~~~~ 359 (367)
T 3nyt_A 349 SIKIICAALTN 359 (367)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99888888764
No 191
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.79 E-value=3.9e-18 Score=193.36 Aligned_cols=313 Identities=14% Similarity=0.064 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++++++.++++...+ .+.+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~al~~~~~~~~~-------~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMALGI-------GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhC--CCcEEEecChHHHHHHHHHHcCC-------CCCCEEEe
Confidence 58899999998876421 245778899999999995 46899999999999999987621 35678999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++|++..... ...| ..+..++....... .|+++|+++++ +++++|++++
T Consensus 85 ~~~~~~~~~~~~-~~~g------------~~~~~v~~~~~~~~-----------~d~~~l~~~l~---~~~~~v~~~~-- 135 (393)
T 1mdo_A 85 PSMTWVSTLNMI-VLLG------------ANPVMVDVDRDTLM-----------VTPEHIEAAIT---PQTKAIIPVH-- 135 (393)
T ss_dssp ESSSCHHHHHHH-HHTT------------CEEEEECBCTTTCC-----------BCHHHHHHHCC---TTEEEECCBC--
T ss_pred CCCccHhHHHHH-HHCC------------CEEEEEeccCCcCC-----------CCHHHHHHhcC---CCceEEEEeC--
Confidence 999998874322 2111 12334443211111 36788888875 3577777755
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec----cccCCCcccceeeeec
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT 506 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~ 506 (965)
++|.+.+ +++|.++|++||+++|+||+|+ |+...|.. ++. +|++++| |++++| ++|+++++
T Consensus 136 --~~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~ 201 (393)
T 1mdo_A 136 --YAGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTD 201 (393)
T ss_dssp --GGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEES
T ss_pred --CCCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeC
Confidence 4666655 8999999999999999999998 33233322 233 7988776 999875 68888886
Q ss_pred -HHHHHhhhccCCcc-------------ccc-----ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q psy8199 507 -DKIYNSIYYKNNIN-------------IFL-----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 507 -~~i~~~~~~~~~~~-------------~~~-----~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 567 (965)
+++++.+..-.... ++. .+..+..+++.++++++.++.++ +..++.+++.+++.+.|.+
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~ 279 (393)
T 1mdo_A 202 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMAD 279 (393)
T ss_dssp CHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 77877664310000 000 11114458888888888776543 4677777888888888876
Q ss_pred cc-CCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------------------------C
Q psy8199 568 LI-THPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------G 618 (965)
Q Consensus 568 l~-~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------~ 618 (965)
+. +.+... ..++.+.++.+.+. .. ........+.+.|.++||.++++ .
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~--~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (393)
T 1mdo_A 280 LPFQPLSLPSWEHIHAWHLFIIRVD-EA--RCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSE 356 (393)
T ss_dssp SSCEECCCCSSCEECCCSCEEEECC-HH--HHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHT
T ss_pred CCcccccCCCCCCCceeEEEEEEec-cc--ccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHh
Confidence 52 111011 12234456666663 10 00011446888899999988752 1
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.+|++++..+++++++.+++++.+.+.
T Consensus 357 ~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 357 RICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 3799998888999999999999876544
No 192
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.79 E-value=3.1e-18 Score=197.36 Aligned_cols=339 Identities=13% Similarity=0.098 Sum_probs=203.5
Q ss_pred CCHHHHHHHHHHHhh-cccc-ccCC---CC--cHHHHHHH-HHHHhhcCCCCCeEEE-cCChhHHHHHHHHHHHHHHHhc
Q psy8199 271 SNSYINKALKNQLNK-LEHV-MLSN---LT--HKPVIKLS-EKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~~~-~~~~---~~--~~~~~~la-~~l~~~~~~~~~~v~~-~~sGseA~~~Al~~a~~~~~~~ 341 (965)
.+|+|++|+.+++.+ .... .... +. .+..++++ +++++.++ .+.+.+ ++||++|++.|++.+++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g--~~~~~v~~~sGs~a~~~a~~~~~~----- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG--AEFANVQPHSGAQANAAVLHALMS----- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC--CCceEEEeCCHHHHHHHHHHHhcC-----
Confidence 489999999988853 2111 1001 11 11335677 88999885 455666 89999999999998753
Q ss_pred CCCCceEEEEEcCCccCCc-ccc-ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 342 GFLNKKKFICLQNSYHGET-LGA-LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
++++|++.+++|+++. .+. ....+ .......++.....+. .|+++|++++.+..
T Consensus 130 ---~Gd~Vl~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~~~-----------~d~~~l~~~i~~~~ 185 (447)
T 3h7f_A 130 ---PGERLLGLDLANGGHLTHGMRLNFSG----------KLYENGFYGVDPATHL-----------IDMDAVRATALEFR 185 (447)
T ss_dssp ---TTCEEEEECGGGTCCGGGTCTTSHHH----------HSSEEEEECCCTTTCS-----------CCHHHHHHHHHHHC
T ss_pred ---CCCEEEecCcccccccchhhhhhhcC----------CeeEEEEcCcCcccCC-----------cCHHHHHHHHHhcC
Confidence 5688999999988732 111 11111 0011222332211111 36888998886432
Q ss_pred CcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCCCcccccccccccCCCccee--eeccccCC
Q psy8199 420 NKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGCGRTGKFFACEHAEIWPDFL--CLSKGITG 495 (965)
Q Consensus 420 ~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g 495 (965)
..+|++ .| . ++++. ++++|+++|++||+++|+||+| +|+...|..... .. ..|++ ++||+++|
T Consensus 186 --~~~i~~~~~-~-~~~~~------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~G 252 (447)
T 3h7f_A 186 --PKVIIAGWS-A-YPRVL------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLGG 252 (447)
T ss_dssp --CSEEEEECS-S-CCSCC------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGCC
T ss_pred --CeEEEEcCC-C-CCCcc------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCCC
Confidence 234555 56 3 33332 4899999999999999999997 444333432111 11 24666 57899965
Q ss_pred CcccceeeeecHHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcc-cC
Q psy8199 496 GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---DNILQRISQDMKKITKALTSL-IT 570 (965)
Q Consensus 496 G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l-~~ 570 (965)
++.|++++++++++.+.. ..+.++++++ +..++++.+++..+.+ ++..+++.++.+++.+.|++. .+
T Consensus 253 --~~gG~i~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (447)
T 3h7f_A 253 --GRSGLIVGKQQYAKAINS------AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVA 324 (447)
T ss_dssp --CSCEEEEECGGGHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred --CCeEEEEECHHHHHHHhh------hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 688999999988887754 1223344333 3345555666665433 246778888888998888764 22
Q ss_pred CCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec-------CCEEEEeCCcc----cCHHH
Q psy8199 571 HPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYLMPPYI----LNKNE 633 (965)
Q Consensus 571 ~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------~~~lR~~p~~~----~t~~~ 633 (965)
.+++..+. ..+.++.+++. ..+ .....+.+.|.++||++. |. .+.+|+.+|.. +++++
T Consensus 325 ~~g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~ee 399 (447)
T 3h7f_A 325 KAGVSVVSGGTDVHLVLVDLR-DSP----LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTE 399 (447)
T ss_dssp HTTCEEGGGSCSSSEEEEECT-TSS----CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHH
T ss_pred CCCeEEecCCCCCCEEEEEcC-CCC----CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHH
Confidence 23343333 24556666653 111 012345566777899987 33 25799998776 67999
Q ss_pred HHHHHHhhhcccccHHHHHHhcCCCchhHHHHHHHHHHH
Q psy8199 634 IQHMTSAIFQTFNELDEVINLFNLPFNDLLFRAQKVHRK 672 (965)
Q Consensus 634 i~~~~~~l~~~~~~~~e~l~l~~~~~~~l~~~a~~~~~~ 672 (965)
++++++.+.+++.+.++ .+...+.....+++++
T Consensus 400 i~~~~~~l~~~l~~~~~------~~~~~~~~~v~~~~~~ 432 (447)
T 3h7f_A 400 FTEVADIIATALATGSS------VDVSALKDRATRLARA 432 (447)
T ss_dssp HHHHHHHHHHHHHSGGG------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc------hhHHHHHHHHHHHHHh
Confidence 99999988776544321 1234445555555443
No 193
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.79 E-value=2.4e-18 Score=194.40 Aligned_cols=316 Identities=10% Similarity=0.056 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC----CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY----KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~----~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
+|++.+|+.+++.. +.. . .......++.+++++.+.. +.++++|++||++|++.+++.+...+ .+++
T Consensus 17 ~~~v~~a~~~~~~~--~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~-----~~gd 87 (385)
T 2bkw_A 17 SGAVQKALDVPSLG--HTS-P-EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK-----APNK 87 (385)
T ss_dssp CHHHHHTTSCCCCC--TTS-H-HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT-----CSCC
T ss_pred hHHHHHHHhccccc--cCC-H-HHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccC-----CCCC
Confidence 56777666544322 110 0 0012344566666666543 24789999999999999999773100 2456
Q ss_pred EEEEE-cCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEE
Q psy8199 348 KFICL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425 (965)
Q Consensus 348 ~vi~~-~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aai 425 (965)
+|+++ .+.||.+........| ..+..++. +.. +. .|+++|++++++ .++++|
T Consensus 88 ~vlv~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~-----------~d~~~l~~~l~~--~~~~~v 141 (385)
T 2bkw_A 88 NVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIG-ES-----------VPLELITEKLSQ--NSYGAV 141 (385)
T ss_dssp EEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTT-SC-----------CCHHHHHHHHHH--SCCSEE
T ss_pred eEEEEcCCcchHHHHHHHHHcC------------CceEEEecCCCC-CC-----------CCHHHHHHHHhc--CCCCEE
Confidence 78777 4566665211111111 13445554 221 11 267889988874 245677
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccce
Q psy8199 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLS 501 (965)
Q Consensus 426 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig 501 (965)
++++ ++|++|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+... ...+|+++ ++|.++|+ .++|
T Consensus 142 ~~~~-~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~G~G 210 (385)
T 2bkw_A 142 TVTH-VDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAP-AGLS 210 (385)
T ss_dssp EEES-EETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-SCEE
T ss_pred EEEc-cCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccc--ccCceEEEecCccccccC-Ccce
Confidence 7888 7999999887 89999999999 99999999996 4432 12222 23468775 47988765 4679
Q ss_pred eeeecHHHHH-hhhc-----cCC-------c----cccccc--C-CCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHH
Q psy8199 502 LVMTTDKIYN-SIYY-----KNN-------I----NIFLHS--H-SYSGNPLACCAALATLEIFNKD---NILQRISQDM 558 (965)
Q Consensus 502 ~v~~~~~i~~-~~~~-----~~~-------~----~~~~~~--~-t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~ 558 (965)
++++++++++ .+.. ... . ..+..+ . .++.++.+++++.++|+.+.+. ...++.+++.
T Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 211 ISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp EEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999988876 4420 000 0 001111 1 1356788888888899876543 4577788888
Q ss_pred HHHHHHH-HcccCCCceeeee------ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEe-
Q psy8199 559 KKITKAL-TSLITHPKIINFR------QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLM- 624 (965)
Q Consensus 559 ~~l~~~L-~~l~~~~~i~~v~------g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~- 624 (965)
+++.+.| +++ ++..+. ..+.++.+.+. + ...+.+.|.++||.+.++ .+++|++
T Consensus 291 ~~l~~~L~~~~----g~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~ 357 (385)
T 2bkw_A 291 DWFKDSLVNGL----QLTSVSRYPSNMSAHGLTAVYVA--D-------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGH 357 (385)
T ss_dssp HHHHHHHHTTT----CCEESSCSSSTTBCSSCEEEECS--C-------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECC
T ss_pred HHHHHHHHHhc----CceecccCcccccCCceEEEecC--C-------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEc
Confidence 9998888 765 222221 24667777653 1 346778888999999873 3689999
Q ss_pred CC---cccCHHHHHHHHHhhhcccc
Q psy8199 625 PP---YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 625 p~---~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+ +..++++++++++++.+.+.
T Consensus 358 ~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 358 MGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp CGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred cccccccCCHHHHHHHHHHHHHHHH
Confidence 44 35789999999999876543
No 194
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.79 E-value=6.3e-18 Score=190.28 Aligned_cols=311 Identities=14% Similarity=0.137 Sum_probs=202.0
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
.+|++.+|+.++++... ..+.+...++.+.++++++ .+++++++||++|++.+++.++.+ ..++++|+
T Consensus 11 ~~~~v~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~~~~~-----~~~gd~Vl 78 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ-----LTQGKRSLLFEEALCEFLG--VKHALVFNSATSALLTLYRNFSEF-----SADRNEII 78 (375)
T ss_dssp CCHHHHHHHHHHHTSSC-----CSSSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHSSCC-----CTTSCEEE
T ss_pred CCHHHHHHHHHHHHcCc-----ccCChHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHhccc-----CCCCCEEE
Confidence 58999999999987631 1235677899999999995 459999999999999999977310 02567899
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~ 430 (965)
+.+++||+........+. .+.+++..... . .|+++|++++. +++++|++..
T Consensus 79 ~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~-~-----------~d~~~l~~~i~---~~~~~v~~~~- 129 (375)
T 2fnu_A 79 TTPISFVATANMLLESGY-------------TPVFAGIKNDG-N-----------IDELALEKLIN---ERTKAIVSVD- 129 (375)
T ss_dssp ECSSSCTHHHHHHHHTTC-------------EEEECCBCTTS-S-----------BCGGGSGGGCC---TTEEEEEEEC-
T ss_pred ECCCccHhHHHHHHHCCC-------------EEEEeccCCCC-C-----------CCHHHHHhhcC---cCceEEEEeC-
Confidence 999999987543332211 22333332111 1 25677777664 3567666655
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eec--cccCCCcccceeeeec
Q psy8199 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 431 v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~s--K~l~gG~~pig~v~~~ 506 (965)
+ +|.+.+ +++|.++|++||+++|+||+|+ +|... .....+..+|++ +|| |.++.| +|+++++
T Consensus 130 ~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~ 195 (375)
T 2fnu_A 130 Y---AGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVT 195 (375)
T ss_dssp G---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEE
T ss_pred C---cCCccC----HHHHHHHHHHcCCEEEEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEe
Confidence 2 787766 8999999999999999999997 43321 112233223554 677 988553 6777773
Q ss_pred --HHHHHhhhccCC-cc----c-----ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCce
Q psy8199 507 --DKIYNSIYYKNN-IN----I-----FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI 574 (965)
Q Consensus 507 --~~i~~~~~~~~~-~~----~-----~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i 574 (965)
+++++.+..-.. .. + ...+.++..+++.+++++..++.+ +...++.+++.+++.+.|+++ +++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~---~~~ 270 (375)
T 2fnu_A 196 NDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN---PYF 270 (375)
T ss_dssp SCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC---SSE
T ss_pred CCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---CCc
Confidence 667665543100 00 0 002233456788777777665443 346778888888888888764 344
Q ss_pred eeeec------eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c----------------------CCEEE
Q psy8199 575 INFRQ------KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----------------------GNTVY 622 (965)
Q Consensus 575 ~~v~g------~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~----------------------~~~lR 622 (965)
..... .+.++.+.+. ..+ ......+.+.|.++||.++. . .+.+|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lR 346 (375)
T 2fnu_A 271 TPLHPLLKDKSSNHLYPILMH-QKF---FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEIS 346 (375)
T ss_dssp EESGGGCSSCCCCSCEEEEEC-GGG---GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEE
T ss_pred cccCCCCCCCcceEEEEEEeC-ccc---cchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEE
Confidence 32222 2334455553 110 00245688888999999872 1 15799
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++...++++++++++++.+.+
T Consensus 347 i~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 347 LPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Confidence 99998899999999999887654
No 195
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.78 E-value=2.4e-18 Score=195.23 Aligned_cols=282 Identities=15% Similarity=0.060 Sum_probs=188.2
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
...+...++.+.++++++ .+++++++||++|+..+++.+. .++++|++.++.|+++.....
T Consensus 59 ~~~~~~~~l~~~ia~~~g--~~~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~--------- 119 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEK--TEACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFE--------- 119 (404)
T ss_dssp TCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHH---------
T ss_pred CcChHHHHHHHHHHHHhC--CCcEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHH---------
Confidence 456777899999999985 3588999999999999998663 256889999999987632100
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
.........+..+|. .|+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|+
T Consensus 120 ~~~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~t~~v~l~~-p~NptG~v~~----l~~i~~la~ 174 (404)
T 1e5e_A 120 HALTKFGIQVDFINT-----------------AIPGEVKKHMK---PNTKIVYFET-PANPTLKIID----MERVCKDAH 174 (404)
T ss_dssp THHHHTTCEEEEECT-----------------TSTTHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHH
T ss_pred HHHHHcCCEEEEECC-----------------CCHHHHHHhcC---CCCcEEEEEC-CCCCCCcccC----HHHHHHHHH
Confidence 001111123344443 15677887774 4678888888 8999999886 999999999
Q ss_pred h-cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecHHHHH-hhhccCCcccccccC-C
Q psy8199 454 N-YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHSH-S 527 (965)
Q Consensus 454 ~-~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~~i~~-~~~~~~~~~~~~~~~-t 527 (965)
+ ||+++|+||+|+.+... ... + + ..|++ ++||.++++++++ |++++++++++ .+.. ..... +
T Consensus 175 ~~~~~~li~De~~~~~~~~-~~~--~-~--~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~------~~~~~~g 242 (404)
T 1e5e_A 175 SQEGVLVIADNTFCSPMIT-NPV--D-F--GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV------GIKDITG 242 (404)
T ss_dssp TSTTCEEEEECTTTCTTTC-CGG--G-G--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------CCCCCCC
T ss_pred hhcCCEEEEECCCchhhhC-Ccc--c-c--CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHH------HHHhCCC
Confidence 9 99999999999866422 211 1 2 35666 6899998755787 99999998887 6654 12222 3
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----------CCCceee----eeceeEEEEEEEeecC
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----------THPKIIN----FRQKGMIWAFDVIIED 592 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~i~~----v~g~G~~~~i~~~~~~ 592 (965)
.+.++++++++.++|+.+. ...++..++.+.+.+.|++.. ++|++.. .++.|.|+.+++. +
T Consensus 243 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~--~ 318 (404)
T 1e5e_A 243 SVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK--S 318 (404)
T ss_dssp CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET--T
T ss_pred CCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC--C
Confidence 5678999999888886432 234444555555555554321 1222221 2345999999774 2
Q ss_pred ccchhhHHHHHHHHHHHcCcEEee---c----------------------------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 593 PEQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 593 ~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
. .....+.+.+.||++.. + .+.+||+++. ++++++++.+
T Consensus 319 ----~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l 388 (404)
T 1e5e_A 319 ----G--FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADF 388 (404)
T ss_dssp ----H--HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHH
T ss_pred ----C--HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHH
Confidence 1 12344556677875432 1 3689999776 6677777776
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+++
T Consensus 389 ~~al 392 (404)
T 1e5e_A 389 KQGL 392 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 196
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.78 E-value=2.7e-18 Score=196.91 Aligned_cols=329 Identities=14% Similarity=0.101 Sum_probs=191.2
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhh-ccccc-c-----CCCCcHHHHHHH-HHHHhhcCCCCCeE-EEcCChhH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVM-L-----SNLTHKPVIKLS-EKLSSLTQYKLGHC-FYGSDGAS 325 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~-~-----~~~~~~~~~~la-~~l~~~~~~~~~~v-~~~~sGse 325 (965)
..+++.++. + +.+|+|++|+.+++.+ ..+.. . .....+...+++ +.+++.++ .+.+ ++++||++
T Consensus 33 ~~i~l~~~~---~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~v~~~~Gs~ 105 (425)
T 3ecd_A 33 SQVELIASE---N--IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN--AGHANVQPHSGAQ 105 (425)
T ss_dssp HSEECCTTC---C--CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT--CSEEECCCSSHHH
T ss_pred cceeeeccc---C--CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC--CCCceeecCchHH
Confidence 356665542 2 2389999999998843 21110 0 011123456666 66777774 4555 45999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCC-cccccc-ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE-TLGALA-VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.+++.+. .++++|++.+++||+. ..+... ..+. ......++.......
T Consensus 106 a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~--------- 158 (425)
T 3ecd_A 106 ANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGK----------WFNALQYGVSRDTML--------- 158 (425)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECC----------------------------CEEEEECCCTTTSS---------
T ss_pred HHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhccc----------ceeeeecCCCcccCc---------
Confidence 9999998773 3678999999999882 222211 1110 001122332211111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCCCcccccccccccCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGCGRTGKFFACEHAEI 482 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|++++.+. ++++|++++ .++ |...+ +++|+++|++||+++|+||+| +|+.+.|..+.. ..
T Consensus 159 --~d~~~l~~~i~~~--~~~~v~~~~-~~~--~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~- 224 (425)
T 3ecd_A 159 --IDYDQVEALAQQH--KPSLIIAGF-SAY--PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE- 224 (425)
T ss_dssp --CCHHHHHHHHHHH--CCSEEEEEC-SCC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-
T ss_pred --cCHHHHHHHHhhc--CCcEEEEcc-ccC--CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-
Confidence 2678899888642 345666763 233 33333 899999999999999999995 444334432221 11
Q ss_pred Cccee--eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-Hhc--ccHHHHHHH
Q psy8199 483 WPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNK--DNILQRISQ 556 (965)
Q Consensus 483 ~pDiv--t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~--~~~~~~~~~ 556 (965)
.+|++ ++||+++| ++.|+++++ +++.+.+... ..++.+.+.++..++++.+++.. +.+ +++.+++++
T Consensus 225 ~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~ 297 (425)
T 3ecd_A 225 HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINSA-----VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLA 297 (425)
T ss_dssp TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH-----HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHhh-----hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 15776 46699965 478998887 5666666431 11222223344444444444443 322 357788888
Q ss_pred HHHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec-------CCEEEE
Q psy8199 557 DMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYL 623 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------~~~lR~ 623 (965)
+.+++.+.|.+. ++..+. +.+.++.+.+. .. ......+.+.|.++||++. |+ .+.+|+
T Consensus 298 ~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi 368 (425)
T 3ecd_A 298 NAQALGDVLKAG----GVDLVTGGTDNHLLLVDLR-PK----GLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRL 368 (425)
T ss_dssp HHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GG----TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred HHHHHHHHHHhC----CCeeccCCCCceEEEEEeC-CC----CCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceec
Confidence 899999988764 333332 35667777664 11 1113456778889999998 42 147999
Q ss_pred eCCcccC----HHHHHHHHHhhhccccc
Q psy8199 624 MPPYILN----KNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 624 ~p~~~~t----~~~i~~~~~~l~~~~~~ 647 (965)
+++...+ +++++++++.+.+++..
T Consensus 369 ~~~~~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 369 GTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp ESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhheeccCCHHHHHHHHHHHHHHHhc
Confidence 9776655 89999999988766543
No 197
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.78 E-value=6.4e-18 Score=186.77 Aligned_cols=276 Identities=14% Similarity=0.067 Sum_probs=185.2
Q ss_pred HHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC
Q psy8199 301 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 380 (965)
Q Consensus 301 ~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 380 (965)
++++++++.++. +.+++++||++|++.+++.+. .++++|++.++.||+.......... ...
T Consensus 2 ~l~~~la~~~g~--~~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~---------~~g 62 (331)
T 1pff_A 2 ALEGKIAKLEHA--EACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLR---------KFG 62 (331)
T ss_dssp HHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHH---------HTT
T ss_pred hHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHH---------hcC
Confidence 577888888863 477778888999999998663 2567899999999886332211000 001
Q ss_pred CCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh-cCCeE
Q psy8199 381 NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-YNIHL 459 (965)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~-~g~ll 459 (965)
..+.+++. .|+++++++++ +++++|++++ ++|++|.+.+ +++|.++|++ ||+++
T Consensus 63 ~~~~~~~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~~~~~~~~~~l 117 (331)
T 1pff_A 63 VEVDFIDM-----------------AVPGNIEKHLK---PNTRIVYFET-PANPTLKVID----IEDAVKQARKQKDILV 117 (331)
T ss_dssp CEEEEECT-----------------TSTTHHHHTCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHTTSSSCEE
T ss_pred CEEEEeCC-----------------CCHHHHHHhhc---CCCeEEEEEC-CCCCcCcccC----HHHHHHHHhhhcCCEE
Confidence 12333332 25577777764 4678888988 8999999886 9999999999 99999
Q ss_pred EEeccccCCCcccccccccccCCCccee--eeccccCCCccc-ceeeeecH-HHHHhhhccCCccccccc-CCCCCCHHH
Q psy8199 460 IADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP-LSLVMTTD-KIYNSIYYKNNINIFLHS-HSYSGNPLA 534 (965)
Q Consensus 460 I~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~p-ig~v~~~~-~i~~~~~~~~~~~~~~~~-~t~~~~~~~ 534 (965)
|+||+|+. |.... .. .++ +|++ +++|.++++..+ +|++++++ ++++.+.. ..++ .+.+.++++
T Consensus 118 i~D~a~~~-~~~~~--~~-~~~--~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~ 185 (331)
T 1pff_A 118 IVDNTFAS-PILTN--PL-DLG--VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ------GIKDITGAIISPHD 185 (331)
T ss_dssp EEECTTTH-HHHCC--GG-GGT--CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT------CCCCCCCCCCCHHH
T ss_pred EEECCCcc-cccCC--hh-hcC--CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH------HHHhhcCCCCCHHH
Confidence 99999973 22211 11 233 5655 589999875467 78999998 88887765 2333 456788999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCCCcee----eeeceeEEEEEEEeecCccchhhH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKII----NFRQKGMIWAFDVIIEDPEQIETF 599 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~i~----~v~g~G~~~~i~~~~~~~~~~~~~ 599 (965)
++++.++++.+.. ..+...++.+.+.+.+++. .+.|++. ..++.|.++.+.+. +
T Consensus 186 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 254 (331)
T 1pff_A 186 AWLITRGTLTLDM--RVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--G------- 254 (331)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--S-------
T ss_pred HHHHHcCcchHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--C-------
Confidence 8888888875432 2233333444444444321 1122221 12356788888763 2
Q ss_pred HHHHHHHHHHcCcEEeec-------------------------------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 600 SKKFFVAALKNELLLRPI-------------------------------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 600 ~~~~~~~l~~~Gi~~~~~-------------------------------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
...+.+.+.+.||++++. .+.+|++++...++++++.+.+.+.+
T Consensus 255 ~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 255 LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 234667788899966432 36999999999999999999988764
No 198
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.78 E-value=4.2e-17 Score=186.79 Aligned_cols=319 Identities=11% Similarity=0.084 Sum_probs=204.9
Q ss_pred ccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 266 NLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 266 ~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
..++ .+|++.+++.++++.. .+. ...+...++.+.++++++ .+++++++||++|++.+++.+. .
T Consensus 26 p~~~-~p~~~~~a~~~~~~~~-~y~---~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~l~~l~---------~ 89 (424)
T 2po3_A 26 PNRI-DRARLYERLDRALDSQ-WLS---NGGPLVREFEERVAGLAG--VRHAVATCNATAGLQLLAHAAG---------L 89 (424)
T ss_dssp CCCC-CHHHHHHHHHHHHHHT-CCS---SSCHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHHT---------C
T ss_pred CCCC-ChHHHHHHHHHHHhcC-Ccc---cCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcC---------C
Confidence 3455 3678999998888653 111 114778899999999995 4799999999999999998762 2
Q ss_pred ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEE
Q psy8199 346 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425 (965)
Q Consensus 346 ~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aai 425 (965)
+++|++.+++|+++....... | ..+..++.....+. .|+++|++++. +++++|
T Consensus 90 gd~Vlv~~~~~~~~~~~~~~~-G------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~---~~~~~v 142 (424)
T 2po3_A 90 TGEVIMPSMTFAATPHALRWI-G------------LTPVFADIDPDTGN-----------LDPDQVAAAVT---PRTSAV 142 (424)
T ss_dssp CSEEEEESSSCTHHHHHHHHT-T------------CEEEEECBCTTTSS-----------BCHHHHGGGCC---TTEEEE
T ss_pred CCEEEECCCccHHHHHHHHHc-C------------CEEEEEecCCCcCC-----------cCHHHHHHhhC---cCCcEE
Confidence 478999999999875432221 1 12334443211111 26778877764 356666
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec----cccCCCcccc
Q psy8199 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPL 500 (965)
Q Consensus 426 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pi 500 (965)
++.+ ++|...+ +++|.++|++||+++|+||+|+ |+...|.. .+..+|++++| |++++ +++
T Consensus 143 ~~~~----~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~--~~~ 207 (424)
T 2po3_A 143 VGVH----LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA--FEG 207 (424)
T ss_dssp EEEC----GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC--SSC
T ss_pred EEEC----CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC--CCC
Confidence 6533 4666544 9999999999999999999998 66544432 22235777655 88877 489
Q ss_pred eeeeec-HHHHHhhhcc---CCcccc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCc
Q psy8199 501 SLVMTT-DKIYNSIYYK---NNINIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPK 573 (965)
Q Consensus 501 g~v~~~-~~i~~~~~~~---~~~~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 573 (965)
|+++++ +++++.+..- +....+ ..+.++..+++++++++..++.++ ...++.+++.+++.+.|.++ ++
T Consensus 208 G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~~~---~g 282 (424)
T 2po3_A 208 GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLADL---PG 282 (424)
T ss_dssp EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC---TT
T ss_pred eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC---CC
Confidence 999998 7887766431 100000 112233446788777777665543 35666777777777776543 44
Q ss_pred eeeee-cee-----EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-C-------------------------CEE
Q psy8199 574 IINFR-QKG-----MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-G-------------------------NTV 621 (965)
Q Consensus 574 i~~v~-g~G-----~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~-------------------------~~l 621 (965)
+..+. +.| .++.+.+. +... ......+.+.|.++||.+.+. . +.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~i~~~--~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l 359 (424)
T 2po3_A 283 VLVADHDRHGLNNHQYVIVEID--EATT-GIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVL 359 (424)
T ss_dssp EEECCGGGGSCCCCCCEEEEEC--HHHH-SSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEE
T ss_pred ccccCCCCCCccccEEEEEEEC--Cccc-hhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEE
Confidence 44332 222 34445543 1000 001346778889999998752 1 127
Q ss_pred EEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
|+.+...+++++++++++++.+.+....+
T Consensus 360 ~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 360 SLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 77767899999999999998876544433
No 199
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.78 E-value=1.4e-17 Score=188.41 Aligned_cols=312 Identities=13% Similarity=0.139 Sum_probs=201.2
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+|+.++++... ...+..+...++.+.++++++. ++.++++||++|++.+++.+.. .++++|++
T Consensus 16 ~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~al~~~l~~l~~-------~~gd~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ---WWRMGGDEVNSFEREFAAHHGA--AHALAVTNGTHALELALQVMGV-------GPGTEVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHTSC---CBTTTCSHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCC---eeecCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcCC-------CCcCEEEE
Confidence 4899999999987631 1234457788999999999963 4666667789999999987621 25678999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++||+........+ ..+.+++.....+. .|+++|++++. +++++|+ |
T Consensus 84 ~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~--~-- 132 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLG-------------AVTVPVDVDAATYN-----------LDPEAVAAAVT---PRTKVIM--P-- 132 (388)
T ss_dssp ESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCC-----------BCHHHHHHHCC---TTEEEEC--C--
T ss_pred CCCccHHHHHHHHHcC-------------CEEEEEecCCCcCC-----------CCHHHHHHhcC---cCceEEE--E--
Confidence 9999998854332221 12334443221111 26788888874 3566666 6
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC-CCcccccccccccCCCcceeeec--cccCCCcccceeeeecHH
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~ 508 (965)
+|++|.+.+ +++|.++|++||+++|+||+|+. +...|.. ...++ ..++.+|| |+++|| ++|+++++++
T Consensus 133 ~n~tG~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~~~~~ 203 (388)
T 1b9h_A 133 VHMAGLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVVFPDG 203 (388)
T ss_dssp BCGGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEEECTT
T ss_pred eCCccCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEEECCH
Confidence 667888776 89999999999999999999972 3222221 22222 12344555 778774 6888888875
Q ss_pred -H--HHhhhc--cCCc----ccc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee
Q psy8199 509 -I--YNSIYY--KNNI----NIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 576 (965)
Q Consensus 509 -i--~~~~~~--~~~~----~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~ 576 (965)
+ ++.+.. .... ..+ ..++++..+++.++++.+.++.++ ...++.+++.+++.+.|+++ |++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~---~~~~~ 278 (388)
T 1b9h_A 204 ETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI---DGVVP 278 (388)
T ss_dssp CHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS---TTCEE
T ss_pred HHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC---CCccc
Confidence 6 555432 1000 001 112334467777777777666553 25677778888888888765 33332
Q ss_pred e-------eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------------------------------
Q psy8199 577 F-------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------------------------------- 618 (965)
Q Consensus 577 v-------~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------------------------------- 618 (965)
. +..+.++.+.+. .. .......+.+.|.++||.+++.-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (388)
T 1b9h_A 279 QGGDVRADRNSHYMAMFRIP--GL--TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDA 354 (388)
T ss_dssp CCCCTTCCBCCCSEEEEECT--TC--CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHH
T ss_pred cCCCcCCCccceEEEEEEeC--Cc--CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHH
Confidence 2 223567777664 10 00124568888999999886421
Q ss_pred ---CEEEEeCCccc-CHHHHHHHHHhhhcc
Q psy8199 619 ---NTVYLMPPYIL-NKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ---~~lR~~p~~~~-t~~~i~~~~~~l~~~ 644 (965)
+.+||+....+ ++++++.+++.+.+.
T Consensus 355 ~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 355 ISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 25888877778 899999988887654
No 200
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.78 E-value=5.5e-18 Score=197.37 Aligned_cols=333 Identities=11% Similarity=0.067 Sum_probs=211.6
Q ss_pred CCHHHHHHHHHHHhhc-----cccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 271 SNSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
.+.++.+++.+++... ..|..+.+..+.+..+++.+.+..+ ...+++++++|+++|+..++++... .|
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~----~g 177 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS----GG 177 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC----CC
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC----CC
Confidence 4677778887777652 2234445566778888888887653 3567999999999999999987642 01
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN-- 420 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-- 420 (965)
..+++.|++..++|+.+.......+. ..+.++........ .|+++|++++++...
T Consensus 178 d~~~d~Vlv~~p~y~~~~~~~~~~g~-------------~~v~~~~~~~~~~~----------~d~~~le~~l~~~~~~~ 234 (498)
T 3ihj_A 178 GKSRTGVMIPIPQYPLYSAVISELDA-------------IQVNYYLDEENCWA----------LNVNELRRAVQEAKDHC 234 (498)
T ss_dssp GGGSEEEEEEESCCTHHHHHHHHTTC-------------EEEEEECBGGGTTB----------CCHHHHHHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeeccccccCC----------CCHHHHHHHHHhhhccC
Confidence 00135899999999887443333222 22233321110000 268899999875321
Q ss_pred cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccccccc--CCC------ccee---
Q psy8199 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEHA--EIW------PDFL--- 487 (965)
Q Consensus 421 ~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~--~~~------pDiv--- 487 (965)
++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...+. +..+... ++. .+++
T Consensus 235 ~~k~i~l~n-p~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 312 (498)
T 3ihj_A 235 DPKVLCIIN-PGNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFH 312 (498)
T ss_dssp EEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEE
T ss_pred CCeEEEEEC-CCCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEe
Confidence 355555444 599999876 677799999999999999999999987644321 2222111 111 1222
Q ss_pred eeccccC--CCcccceeee---ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----------HHh-cccH
Q psy8199 488 CLSKGIT--GGYLPLSLVM---TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----------IFN-KDNI 550 (965)
Q Consensus 488 t~sK~l~--gG~~pig~v~---~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~-----------~~~-~~~~ 550 (965)
+|||++. .| +++|+++ +++++++.+.. ......+.+.++++++.++++ .+. ....
T Consensus 313 S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~ 384 (498)
T 3ihj_A 313 STSKGYMGECG-YRGGYMEVINLHPEIKGQLVK-------LLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESV 384 (498)
T ss_dssp ESSSSTTCCSS-SCCEEEEEESCCHHHHHHHHH-------HHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHH
T ss_pred ccccccccCcc-cceEEEEEecCCHHHHHHHHH-------HHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHH
Confidence 6899994 35 8999998 68888888765 123345567888887776663 121 1234
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccch-------hhHHHH--HHHHHHHcCcEEeec---
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQI-------ETFSKK--FFVAALKNELLLRPI--- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~-------~~~~~~--~~~~l~~~Gi~~~~~--- 617 (965)
.++++++.+++.+.|+++ |++..+.+.|.|+.+ .+. .+... ....+. +.+.+.++||++.|+
T Consensus 385 ~~~l~~~~~~l~~~L~~~---~g~~~~~p~gg~~~~~~l~--~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f 459 (498)
T 3ihj_A 385 LGNLAKKAKLTEDLFNQV---PGIHCNPLQGAMYAFPRIF--IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGF 459 (498)
T ss_dssp HHHHHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEEC--CCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGT
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEecCCCeEEEEEEecc--CchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCccc
Confidence 566777777777777654 677777777776655 332 11000 000122 345566889999873
Q ss_pred -----CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -----~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+++|++. ..++++++++++++.+...+
T Consensus 460 ~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 460 GQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHH
Confidence 14899994 58999999999998765543
No 201
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.78 E-value=4.3e-18 Score=194.34 Aligned_cols=244 Identities=15% Similarity=0.106 Sum_probs=165.8
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++...+++++++++++ .+..++++||++|++.+++.+. .++++||+.++.||+.......+.
T Consensus 53 ~~~~~~~~~~l~~~la~~~g--~~~~v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~---- 118 (421)
T 2ctz_A 53 SRIMNPTVDVLEKRLAALEG--GKAALATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTL---- 118 (421)
T ss_dssp BTTBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHH----
T ss_pred cCCCChHHHHHHHHHHHHhC--CCceEEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHH----
Confidence 44567888999999999996 3467788889999999999763 357899999999998743321110
Q ss_pred ccchhcccCCCeeEe-cCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYII-TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
......+.++ +. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.+
T Consensus 119 -----~~~g~~~~~~~~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~n~~G~~~~----l~~i~~ 168 (421)
T 2ctz_A 119 -----KRLGIEVRFTSRE-----------------ERPEEFLALTD---EKTRAWWVES-IGNPALNIPD----LEALAQ 168 (421)
T ss_dssp -----HHTTCEEEECCTT-----------------CCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred -----HHcCCEEEEECCC-----------------CCHHHHHHhhc---cCCeEEEEEC-CCCCCCcccC----HHHHHH
Confidence 0011123333 22 25788888875 4688999999 9999998887 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeecH---HH----HHhhhcc---CC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD---KI----YNSIYYK---NN 518 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~~---~i----~~~~~~~---~~ 518 (965)
+|++||+++|+||+|+++|..+..+ +..+|++ +++|.+++.+.++|++++.+ ++ ++.+... +.
T Consensus 169 ~a~~~g~~livD~~~~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~ 243 (421)
T 2ctz_A 169 AAREKGVALIVDNTFGMGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243 (421)
T ss_dssp HHHHHTCEEEEECGGGGGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT
T ss_pred HHHHcCCEEEEECCcccccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhh
Confidence 9999999999999996676554432 3458988 68899987446888877741 22 1222110 00
Q ss_pred -cc--------------c--ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee----
Q psy8199 519 -IN--------------I--FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF---- 577 (965)
Q Consensus 519 -~~--------------~--~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v---- 577 (965)
.. . .........+|+.++++++.|+.+.. ..++..++.+++.+.|++. |++..+
T Consensus 244 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~~---p~v~~v~~p~ 318 (421)
T 2ctz_A 244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLEQ---PQVAWVNYPG 318 (421)
T ss_dssp TBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC---TTEEEEECTT
T ss_pred hhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHhHHHHHHHHHhC---CCeeEEECCC
Confidence 00 0 00112246789988888888875532 3455556777777777654 444433
Q ss_pred ---------------eceeEEEEEEEe
Q psy8199 578 ---------------RQKGMIWAFDVI 589 (965)
Q Consensus 578 ---------------~g~G~~~~i~~~ 589 (965)
++.|.+++|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~g~ivsf~l~ 345 (421)
T 2ctz_A 319 LPHHPHHDRAQKYFKGKPGAVLTFGLK 345 (421)
T ss_dssp STTCTTHHHHHHHHTTCCCSEEEEEET
T ss_pred CCCCCCHHHHHHhccCCCceEEEEEeC
Confidence 578999999985
No 202
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.77 E-value=2.4e-18 Score=196.93 Aligned_cols=199 Identities=11% Similarity=0.155 Sum_probs=159.9
Q ss_pred CCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC----CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-----
Q psy8199 691 GCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----GATRFCMGAAWRELKDRDLDNIENMICEVKK----- 761 (965)
Q Consensus 691 ~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~----- 761 (965)
.|+.+|.||.+....... ...+....+.+.++++...+. ++..++|++|. | ...+.+.+.++++.+++
T Consensus 61 fC~~~C~yC~~~~~~~~~-~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGt-p-t~l~~~~l~~ll~~i~~~~~~~ 137 (457)
T 1olt_A 61 FCHKLCYFCGCNKIVTRQ-QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGT-P-TYLNKAQISRLMKLLRENFQFN 137 (457)
T ss_dssp EESSCCTTCCSSCEECSC-THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESC-G-GGSCHHHHHHHHHHHHHHSCEE
T ss_pred CCCCCCCCCCCceeccCC-cchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-c-ccCCHHHHHHHHHHHHHhCCCC
Confidence 599999999987642211 111113467888888776554 46778887764 3 22346777778877775
Q ss_pred --cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-CC
Q psy8199 762 --IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-SE 836 (965)
Q Consensus 762 --~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-~e 836 (965)
..+.+.++++.++++.++.|+++|++++++|+|| ++++++.+++.+++++.+++++.++++|+. +++++|+|+ ||
T Consensus 138 ~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPge 217 (457)
T 1olt_A 138 ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQ 217 (457)
T ss_dssp EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTC
T ss_pred CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCC
Confidence 2345677889999999999999999999999999 999999999999999999999999999997 999999999 79
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC-----CCCCCHHHHHHHHHHHHHHCC
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-----SSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~-----~~~~~~~~~~~~ia~~R~~lp 894 (965)
|.+++.++++.+.+++ ++.+.++.|.|.|+|+... ...++.++..+++..+...+.
T Consensus 218 t~e~~~~tl~~~~~l~--~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 218 TPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp CHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999998653 234577777777776665553
No 203
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.77 E-value=8.1e-18 Score=188.91 Aligned_cols=321 Identities=12% Similarity=0.019 Sum_probs=191.0
Q ss_pred ecCCc-ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHH
Q psy8199 250 TFSGK-RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAV 327 (965)
Q Consensus 250 d~dG~-~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~ 327 (965)
...|+ .++|+..+.+.. -.+|++.+|+. .. ..++....++++.+++.++.. .+++++++||++|+
T Consensus 23 ~~~g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~ 89 (374)
T 2aeu_A 23 NEKGRDALYDLSGLSGGF---LIDEKDKALLN----TY------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAI 89 (374)
T ss_dssp HHTCGGGCEECSSCCCCC---CCCHHHHHHHT----ST------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred hccCccceeeecccCCCC---CCCHHHHHHHH----Hh------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHH
Confidence 35576 677876542111 14677877775 11 112334467777777777532 37899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc--cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG--ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
..+++.+ ++++|++.+++||+.... .....| ..+..+ .
T Consensus 90 ~~~~~~~----------~gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v-~----------------- 129 (374)
T 2aeu_A 90 LATILAL----------KPKKVIHYLPELPGHPSIERSCKIVN------------AKYFES-D----------------- 129 (374)
T ss_dssp HHHHHHH----------CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE-S-----------------
T ss_pred HHHHHhC----------CCCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe-C-----------------
Confidence 9999865 357899999999985321 111111 112222 1
Q ss_pred HHHHHHHHHHHhCCCcEEE-EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAA-IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aa-ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
|+++|+++ . +++++ |++++ ++|++|. +...+++|.++|++||+++|+||+|..+ ..|...........+
T Consensus 130 -d~~~l~~~-~---~~~~~~v~~~~-p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~ 199 (374)
T 2aeu_A 130 -KVGEILNK-I---DKDTLVIITGS-TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGA 199 (374)
T ss_dssp -CHHHHHTT-C---CTTEEEEEECB-CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTC
T ss_pred -CHHHHHhc-C---CCccEEEEEcc-CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCC
Confidence 45677765 2 35677 88888 7888884 4456999999999999999999987533 111111000112346
Q ss_pred cee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-
Q psy8199 485 DFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI- 561 (965)
Q Consensus 485 Div--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l- 561 (965)
|++ ++||.++| +++|++++++++++.+.. .....+.+.++++++++.++|+.+.. +..++..++.+.+
T Consensus 200 di~~~S~sK~l~g--~~~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~ 270 (374)
T 2aeu_A 200 DLVVTSTDKLMEG--PRGGLLAGKKELVDKIYI------EGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFD 270 (374)
T ss_dssp SEEEEETTSSSSS--CSCEEEEEEHHHHHHHHH------HHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCC
T ss_pred cEEEecCcccccC--cceEEEEECHHHHHHHHH------hhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 877 48999875 699999999999887764 11112235689999999999987532 1233333344333
Q ss_pred ---HHHHH----cccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHH-HHHHHcCcEEeecC------CEEEEeCC
Q psy8199 562 ---TKALT----SLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFF-VAALKNELLLRPIG------NTVYLMPP 626 (965)
Q Consensus 562 ---~~~L~----~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~------~~lR~~p~ 626 (965)
++.|. .+.+.+++. ..++.|.++..... ...........+. +.+.++||++.|+. +++||+++
T Consensus 271 ~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~ 348 (374)
T 2aeu_A 271 LSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK--DDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLT 348 (374)
T ss_dssp CHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES--SHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETT
T ss_pred HHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc--cccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcC
Confidence 34443 321113443 34667776655321 1000000111244 44557899998742 47999965
Q ss_pred c-ccCHHHHHHHHHhhhcc
Q psy8199 627 Y-ILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 627 ~-~~t~~~i~~~~~~l~~~ 644 (965)
. ...+.+++++.+.+.++
T Consensus 349 ~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 349 SRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp SGGGGGSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 3 22233366666555443
No 204
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.76 E-value=1.2e-17 Score=188.59 Aligned_cols=340 Identities=12% Similarity=0.024 Sum_probs=209.0
Q ss_pred cccccccccchhccCCC--CCHHHHHHHHHHH-hh--ccccccCCCCcHHHHHHHHHHHhhcCC--CCC--eEEEcCChh
Q psy8199 254 KRYLDAISSWWVNLFGH--SNSYINKALKNQL-NK--LEHVMLSNLTHKPVIKLSEKLSSLTQY--KLG--HCFYGSDGA 324 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh--~~p~v~~av~~~~-~~--~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~--~v~~~~sGs 324 (965)
...||+..|....+-|. ..+.|.+|.. .+ +. ...|....+..+.++.+++.+.+.... ..+ .++.|+||+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 45788877753333332 3677888766 43 22 223444556677788888887654432 234 368999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (965)
+|+..++++...+ .+ +.|++.+++|.++.......+. .++.+|.. ...+.
T Consensus 108 ~al~~~~~~l~~~------~~-d~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~--------- 158 (405)
T 3k7y_A 108 GAIFVLLEFLKML------NV-ETLYVTNPPYINHVNMIESRGF-------------NLKYINFFDYNLID--------- 158 (405)
T ss_dssp HHHHHHHHHHHTT------TC-CEEEEESSCCHHHHHHHHTTTC-------------EEEEECCEETTTTE---------
T ss_pred HHHHHHHHHHHhc------CC-CEEEEeCCCCHhHHHHHHHcCC-------------eEEEEeccccccCC---------
Confidence 9999999877543 25 9999999999988544333332 23333331 11111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---cccccc-
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEH- 479 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~- 479 (965)
.|+++|++.+.+.+ +..+|++.|-.+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+. ......
T Consensus 159 --~d~~~l~~~l~~~~-~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~ 234 (405)
T 3k7y_A 159 --INYDLFLNDLRNIP-NGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKF 234 (405)
T ss_dssp --ECHHHHHHHHHHSC-SSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHH
T ss_pred --cCHHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHH
Confidence 26788998887533 3445666540479999765 788899999999999999999999998854321 111111
Q ss_pred cCCCccee---eeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHH--hc--
Q psy8199 480 AEIWPDFL---CLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIF--NK-- 547 (965)
Q Consensus 480 ~~~~pDiv---t~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~--~~-- 547 (965)
....+.++ +|||.++ .| |++|++++ ++++++.+... .. ..+..++ +.+.++++++.++|+.- .+
T Consensus 235 ~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~--l~-~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 310 (405)
T 3k7y_A 235 EEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNN--LC-FIVRKFYSSPVIHTNRILCQLLNNQNLKLNW 310 (405)
T ss_dssp HTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHH--HH-HHHHTTTSSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred HhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHH--HH-HHHhcccCCCcHHHHHHHHHHhCCHHHHHHH
Confidence 12234444 6899876 45 89999753 56665544320 00 0112233 34567887777777521 00
Q ss_pred ----ccHHHHHHHHHHHHHHHHH----cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCC
Q psy8199 548 ----DNILQRISQDMKKITKALT----SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN 619 (965)
Q Consensus 548 ----~~~~~~~~~~~~~l~~~L~----~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~ 619 (965)
....++++++++.+.+.|+ ++.--..+..+.++|.|+.+.-. + . .+.+.|.++||++.|++
T Consensus 311 ~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l--~----~----~~~~~L~~~gV~v~p~~- 379 (405)
T 3k7y_A 311 IKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPL--L----A----KIAEHLKTHHIYIINNG- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGG--G----G----GGTTTTTTTTEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCC--C----H----HHHHHHHHCCEeecCCC-
Confidence 1234556777778888887 55111123445667776554211 1 1 12244578899999965
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||+.+ ..++++++.+++++.+++
T Consensus 380 --Ris~a-~~~~~~i~~~~~~i~~~~ 402 (405)
T 3k7y_A 380 --RINVS-GITKNNVDYIADKICLSL 402 (405)
T ss_dssp --EEEGG-GCCTTHHHHHHHHHHHHH
T ss_pred --eEEEe-ccCHHHHHHHHHHHHHHH
Confidence 88832 357788999998887654
No 205
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.76 E-value=5e-17 Score=184.13 Aligned_cols=316 Identities=11% Similarity=0.106 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+++.++++.. ++. ...+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~l~~-------~~gd~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAGV-------KQDDIVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCCCEEEE
Confidence 467888888887652 211 112567889999999985 48999999999999999987621 35678999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++|+++.......+. .+.+++.... +. .|+++|++++++.++++++|++++
T Consensus 78 ~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~-~~-----------~d~~~l~~~i~~~~~~~~~v~~~~-- 130 (394)
T 1o69_A 78 SSFTFIASVAPICYLKA-------------KPVFIDCDET-YN-----------IDVDLLKLAIKECEKKPKALILTH-- 130 (394)
T ss_dssp ESSSCGGGTHHHHHTTC-------------EEEEECBCTT-SS-----------BCHHHHHHHHHHCSSCCCEEEEEC--
T ss_pred CCCccHHHHHHHHHcCC-------------EEEEEEeCCC-CC-----------cCHHHHHHHHhcccCCceEEEEEC--
Confidence 99999998544333221 2334443211 11 267889988875322466777765
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeee--ccccCCCcccceeeeec-H
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~-~ 507 (965)
++|...+ +++|.++|++||+++|+||+|+ |+...|.... .++ .+|+.+| +|++++ ..+|+++++ +
T Consensus 131 --~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~~--~~~G~~~~~~~ 199 (394)
T 1o69_A 131 --LYGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIITT--SGGGMLIGKNK 199 (394)
T ss_dssp --GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSCC--SSCEEEEESCH
T ss_pred --CCCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCCC--CCceEEEECCH
Confidence 3565544 9999999999999999999998 6544443211 111 3688888 577765 479999995 7
Q ss_pred HHHHhhhccCCcc-----cc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeec
Q psy8199 508 KIYNSIYYKNNIN-----IF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQ 579 (965)
Q Consensus 508 ~i~~~~~~~~~~~-----~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g 579 (965)
++++.+....... .+ ..+..+..+++.++++++.++.+++ ..++.+++.+++.+.|+++ .........
T Consensus 200 ~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 275 (394)
T 1o69_A 200 EKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY--FSFLDELEN 275 (394)
T ss_dssp HHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT--EECCCCCTT
T ss_pred HHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc--ccccCCCCC
Confidence 8877665310000 00 1122233577888887777765543 6788888999999988764 111111111
Q ss_pred -eeE--EEEEEEeecCcc-----------------chhhHHHHHHHHHHHcCcEEeecC---------------------
Q psy8199 580 -KGM--IWAFDVIIEDPE-----------------QIETFSKKFFVAALKNELLLRPIG--------------------- 618 (965)
Q Consensus 580 -~G~--~~~i~~~~~~~~-----------------~~~~~~~~~~~~l~~~Gi~~~~~~--------------------- 618 (965)
.+. ++.+.+. +.. ........+.+.|.++||.++++.
T Consensus 276 ~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~ 353 (394)
T 1o69_A 276 SRSNRWLSTALIN--FDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSE 353 (394)
T ss_dssp EECCCSSEEEEES--CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHH
T ss_pred CcceeEEEEEEec--chhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHH
Confidence 122 3444443 100 000124568888999999887641
Q ss_pred ----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 619 ----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
..+++.....+++++++.+++++.+.
T Consensus 354 ~~~~~~~~~~~~~~~t~edi~~~~~~l~~~ 383 (394)
T 1o69_A 354 LFFQKGICLPSGTAMSKDDVYEISKLILKS 383 (394)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 23444445668999999999888654
No 206
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.76 E-value=2.4e-17 Score=184.51 Aligned_cols=312 Identities=9% Similarity=0.012 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 271 SNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
.+|++.+++.+++.+.. ..+......+...++.+++++.++. ..+++++++||++|+..+++... +.
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---------~~- 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---------EK- 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---------SS-
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---------CC-
Confidence 47889999888876532 1111111124567888889998864 34689999999999999998763 23
Q ss_pred EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 348 ~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
++++....+++....... ......+..++.+.... .|+++|+ + .+++.+|++
T Consensus 85 ~~i~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~------------~d~~~l~--~---~~~~~~v~~ 136 (362)
T 3ffr_A 85 KSFHCVNGSFSKRFYEFA-----------GELGREAYKEEAAFGKG------------FYPADIT--V---PADAEIICL 136 (362)
T ss_dssp EEEEEECSHHHHHHHHHH-----------HHTTCEEEEEECCTTCC------------CCGGGCC--C---CTTCCEEEE
T ss_pred cEEEEcCcHHHHHHHHHH-----------HHhCCCeEEEecCCCCC------------CCHHHHh--c---cCCccEEEE
Confidence 666655555552111000 00111234444432111 1455555 2 345677777
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhc-CCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVM 504 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~ 504 (965)
++ ++|++|.+.+ +++|.++|++| |+++|+||+|+ +|.. .... .. .|+++ ++|.++++ ..+|+++
T Consensus 137 ~~-~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~-~~~~--~~~~--~~--~d~~~~s~~K~~~~~-~G~g~~~ 203 (362)
T 3ffr_A 137 TH-NETSSGVSMP----VEDINTFRDKNKDALIFVDAVSS-LPYP--KFDW--TK--IDSVFFSVQKCFGLP-AGLGVWI 203 (362)
T ss_dssp ES-EETTTTEECC----HHHHTTSGGGSTTSEEEEECTTT-TTSS--CCCT--TS--CSEEEEETTSTTCCC-SCCEEEE
T ss_pred Ec-CCCCcceeCC----HHHHHHHHHhCCCCEEEEecccc-cCCc--ccCh--hH--CcEEEEecccccCCC-CceEEEE
Confidence 77 7999999887 99999999999 99999999986 3211 1111 11 67775 56999854 3568888
Q ss_pred ecHHHHHhhhcc---CCccccc-----------ccC-CCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Q psy8199 505 TTDKIYNSIYYK---NNINIFL-----------HSH-SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 566 (965)
Q Consensus 505 ~~~~i~~~~~~~---~~~~~~~-----------~~~-t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~ 566 (965)
+++++++.+... +....+. .+. .++.+..+++++.++++.+.+ +...++.+++.+++.+.|+
T Consensus 204 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (362)
T 3ffr_A 204 LNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIE 283 (362)
T ss_dssp EEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 898887766531 0000000 011 345677788888888886654 3456677777788888776
Q ss_pred cccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHH
Q psy8199 567 SLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 567 ~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~ 636 (965)
++ |++..+. ..+.++.+.+. + ....+.+.|.++||.+.++ ++++|+++....+++++++
T Consensus 284 ~~---~g~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~ 352 (362)
T 3ffr_A 284 SS---KVFSFGVEDAKLRSMTTIVANTT--M------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHK 352 (362)
T ss_dssp HC---SSEEESSSCGGGBCSSEEEEEES--S------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHH
T ss_pred Hc---cCceeccCChhhcCCceEEEecC--C------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence 54 4444322 12455666654 1 2456888899999999863 3789999998899999999
Q ss_pred HHHhhhcc
Q psy8199 637 MTSAIFQT 644 (965)
Q Consensus 637 ~~~~l~~~ 644 (965)
+++++.+.
T Consensus 353 l~~~l~~~ 360 (362)
T 3ffr_A 353 LVQTLKEK 360 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 207
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.75 E-value=2e-16 Score=178.96 Aligned_cols=324 Identities=13% Similarity=0.094 Sum_probs=205.1
Q ss_pred cchhccCCCC--CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHH
Q psy8199 262 SWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 339 (965)
Q Consensus 262 ~~~~~~lGh~--~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~ 339 (965)
|++..++|.. +|++.+|+.++++... .+..+...++.+.++++++ .+++++++||++|++.|++.++. +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~~i~~~sGt~a~~~al~~~~~-~~ 73 (390)
T 3b8x_A 2 HMINYPLASSTWDDLEYKAIQSVLDSKM-----FTMGEYVKQYETQFAKTFG--SKYAVMVSSGSTANLLMIAALFF-TK 73 (390)
T ss_dssp ---CBCSCCCCCCHHHHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTS-SS
T ss_pred CceeccCCCCCCCHHHHHHHHHHHHcCC-----CCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHHh-hh
Confidence 3455556654 7999999999887632 2346788899999999995 45899999999999999987631 10
Q ss_pred hcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 340 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 340 ~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
..+..++++|++..++||+........+. .+.+++.....+. .|+++|++++.
T Consensus 74 ~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~i~--- 126 (390)
T 3b8x_A 74 KPRLKKGDEIIVPAVSWSTTYYPLQQYGL-------------RVKFVDIDINTLN-----------IDIESLKEAVT--- 126 (390)
T ss_dssp SCSCCTTCEEEEESSSCHHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCHHHHHHHCC---
T ss_pred hcCCCCcCEEEECCCCcHHHHHHHHHcCC-------------EEEEEecCccccC-----------cCHHHHHHHhC---
Confidence 11123568899999999987543332211 2334443211111 26788888875
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCc--
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY-- 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~-- 497 (965)
+++++|++.+ +.|...+ +++|.++|++||+++|+||+|+ +|.. +....+|..+|+.+|||..+.++
T Consensus 127 ~~~~~v~~~~----~~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~g~~~~~~~~s~~~~k~~~~ 194 (390)
T 3b8x_A 127 DSTKAILTVN----LLGNPNN----FDEINKIIGGRDIILLEDNCES-MGAT---FNNKCAGTFGLMGTFSSFYSNHIAT 194 (390)
T ss_dssp TTEEEEEEEC----GGGCCCC----HHHHHHHHTTSCCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCS
T ss_pred cCCeEEEEEC----CccChhh----HHHHHHHHHHcCCEEEEECcCc-ccCE---ECCcccccccceEEEEccCCCCCcc
Confidence 3566666632 2344444 9999999999999999999997 3221 12345677789999876433221
Q ss_pred ccceeeeecH-HHHHhhh---ccC--Cc-----------------ccc---cccCCCCCCHHHHHHHHHHHHHHhcccHH
Q psy8199 498 LPLSLVMTTD-KIYNSIY---YKN--NI-----------------NIF---LHSHSYSGNPLACCAALATLEIFNKDNIL 551 (965)
Q Consensus 498 ~pig~v~~~~-~i~~~~~---~~~--~~-----------------~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~ 551 (965)
-..|++++++ ++.+.+. ..+ .. ..+ ..+.++..+++.++++++.|+.++ +..
T Consensus 195 g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~ 272 (390)
T 3b8x_A 195 MEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFI 272 (390)
T ss_dssp SSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHH
T ss_pred CCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHH
Confidence 1236777775 5654332 211 00 000 013344578999999988887664 467
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeee--ceeEE--EEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C--
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFR--QKGMI--WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-- 618 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~--g~G~~--~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-- 618 (965)
++.+++.+++.+.|+++ |++.... ..+.+ +.+.+. +.. ......+.+.|.++||.+++. .
T Consensus 273 ~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~i~~~--~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~ 345 (390)
T 3b8x_A 273 SVRRKNAEYFLDKFKDH---PYLDVQQETGESSWFGFSFIIK--KDS--GVIRKQLVENLNSAGIECRPIVTGNFLKNTD 345 (390)
T ss_dssp HHHHHHHHHHHHHHTTC---SSEEECCCCSBCCCCEEEEEEC--TTS--CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHH
T ss_pred HHHHHHHHHHHHHhcCC---CCcccCCCCCCcccEEEEEEec--CcC--cccHHHHHHHHHHCCCCeeeecCCchhhcch
Confidence 88888889998888764 3433211 12333 444442 100 011446778888999987641 0
Q ss_pred ---------------------CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 619 ---------------------NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 619 ---------------------~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+.+||+....+|+++++.+++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 346 VLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 25889988899999999988765
No 208
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.75 E-value=2.1e-17 Score=188.92 Aligned_cols=328 Identities=12% Similarity=0.073 Sum_probs=192.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc-cc-cc--cCCCCcHH----HHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EH-VM--LSNLTHKP----VIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~-~~--~~~~~~~~----~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
..+++.++. .+.+|+|++|+.+++.+. .. +. ........ ...+.+.+++.++.+.+++ +++||++|
T Consensus 26 ~~i~l~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a 99 (417)
T 3n0l_A 26 EGLEMIASE-----NFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQA 99 (417)
T ss_dssp HSEECCTTC-----CCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHH
T ss_pred cCeeeeccc-----CCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHH
Confidence 456665442 124899999999888432 11 11 01111222 2344557888886544445 45667999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc--cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG--ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
++.+++.+. .++++|++.+++|++.... .....+ .......++... .+.
T Consensus 100 ~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~-~~~---------- 150 (417)
T 3n0l_A 100 NQGVYAALI--------NPGDKILGMDLSHGGHLTHGAKVSSSG----------KMYESCFYGVEL-DGR---------- 150 (417)
T ss_dssp HHHHHHHHS--------CTTCEEEEECC--------------------------CCSEEEEECCCT-TSS----------
T ss_pred HHHHHHHhc--------CCCCEEEecccccccccchhhhhhhhc----------ceeeeEeccCCC-CCC----------
Confidence 999999874 3568999999999875221 111111 001122222221 111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~ 483 (965)
.|+++|++++.+. ++++|++.+ .+ .|.+.+ +++|+++|++||+++|+||+|+ |+...|.... ... .
T Consensus 151 -~d~~~l~~~i~~~--~~~~v~~~~-~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~ 217 (417)
T 3n0l_A 151 -IDYEKVREIAKKE--KPKLIVCGA-SA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-Y 217 (417)
T ss_dssp -CCHHHHHHHHHHH--CCSEEEECC-SS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-T
T ss_pred -cCHHHHHHHHHhc--CCeEEEECC-cc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-c
Confidence 3788999988732 345566544 23 477665 9999999999999999999974 2211121110 011 3
Q ss_pred cceeeec--cccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHH
Q psy8199 484 PDFLCLS--KGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQD 557 (965)
Q Consensus 484 pDivt~s--K~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~ 557 (965)
.|++++| |+++| ++.|+++++ +++++.+... ..++.+.+.++..++++.+++....+ +...++++++
T Consensus 218 ~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~ 290 (417)
T 3n0l_A 218 AHVVSSTTHKTLRG--PRGGIIMTNDEELAKKINSA-----IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTN 290 (417)
T ss_dssp CSEEEEESSTTTCS--CSCEEEEESCHHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ceEEEeeCccccCC--CCeeEEEECCHHHHHHHhhh-----hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5888655 99965 468999998 7888777541 12333344567777777777765332 3466677777
Q ss_pred HHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEEEe
Q psy8199 558 MKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLM 624 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR~~ 624 (965)
.+++.+.|.+. ++..+. ..+.++.+.+. ..+ .....+.+.|.++||.+.+. .+.+|+.
T Consensus 291 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~ 361 (417)
T 3n0l_A 291 AQVLANVLMDR----KFKLVSDGTDNHLVLMSFL-DRE----FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLG 361 (417)
T ss_dssp HHHHHHHHHHT----TCEEGGGSCSSSEEEEECT-TSS----SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEE
T ss_pred HHHHHHHHHhC----CceeccCCCCceEEEEEcc-cCC----CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEec
Confidence 88888888763 333222 23446666553 111 11345667888999998742 1569998
Q ss_pred CCcc----cCHHHHHHHHHhhhcccc
Q psy8199 625 PPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 625 p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
++.. +++++++++++++.+++.
T Consensus 362 ~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 362 TPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 7644 568999999998876553
No 209
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.74 E-value=8.3e-18 Score=193.18 Aligned_cols=284 Identities=13% Similarity=0.161 Sum_probs=180.9
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
+..+...+++++++++++ .+++++++||++|+..+++++ .++++|++.++.||++.......
T Consensus 130 ~g~~~~~~l~~~la~~~g--~~~~i~~~sGt~al~~~l~~~---------~~Gd~Vi~~~~~y~~~~~~~~~~------- 191 (464)
T 1ibj_A 130 SGNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHLI---------KNGEEIVAGDDVYGGSDRLLSQV------- 191 (464)
T ss_dssp TCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHh---------CCCCEEEEECCCchhHHHHHHHH-------
Confidence 345677888888998885 458899999999998887632 35688999999998863210000
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
.......+.+++. .|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|+
T Consensus 192 --~~~~G~~v~~v~~-----------------~d~~~l~~~i~---~~tk~v~l~~-p~NptG~v~~----l~~i~~la~ 244 (464)
T 1ibj_A 192 --VPRSGVVVKRVNT-----------------TKLDEVAAAIG---PQTKLVWLES-PTNPRQQISD----IRKISEMAH 244 (464)
T ss_dssp --SGGGTCEEEEECT-----------------TSHHHHHHHCC---SSEEEEEECS-SCTTTCCCCC----HHHHHHHHH
T ss_pred --HHHcCCEEEEeCC-----------------CCHHHHHHHhc---cCceEEEEeC-CCCCCCEeec----HHHHHHHHH
Confidence 0011123344443 26788888874 4688999999 8999999886 999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCC--CcccceeeeecH-HHHHhhhccCCcccccccCCC
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG--GYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g--G~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~ 528 (965)
+||+++|+||+|.. |.... ..+ ..+|++ +++|.++| | +++|++++++ ++++.+.. +......
T Consensus 245 ~~gi~livDea~~~-g~~~~--~~~---~~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~------~~~~~g~ 311 (464)
T 1ibj_A 245 AQGALVLVDNSIMS-PVLSR--PLE---LGADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYF------LQNSEGS 311 (464)
T ss_dssp TTTCEEEEECTTTC-TTTCC--GGG---TTCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHH------HHHHTTC
T ss_pred HcCCEEEEECCCcc-cccCC--hhh---cCCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHH------HHHhcCC
Confidence 99999999999963 22111 122 346877 58999976 5 6889999984 78777654 1111233
Q ss_pred CCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH-------HcccCCCcee----eeeceeEEEEEEEeecCccc
Q psy8199 529 SGNPLACCAALATLEIFNK--DNILQRISQDMKKITKAL-------TSLITHPKII----NFRQKGMIWAFDVIIEDPEQ 595 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L-------~~l~~~~~i~----~v~g~G~~~~i~~~~~~~~~ 595 (965)
+.+++++++++++|+.+.. +...+.+....+++.+.- ..+.++|++. ..++.|.++.+++. +
T Consensus 312 ~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~--- 386 (464)
T 1ibj_A 312 GLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--S--- 386 (464)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--C---
T ss_pred CCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--C---
Confidence 4578898888888754321 112223333333333210 1122334332 12345778888863 2
Q ss_pred hhhHHHHHHHHHHHcCcEEeec----------------------------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 596 IETFSKKFFVAALKNELLLRPI----------------------------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 596 ~~~~~~~~~~~l~~~Gi~~~~~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
......+.+.|...|+.+.++ .+.+|+++++ ++++++++++.+++
T Consensus 387 -~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al 459 (464)
T 1ibj_A 387 -VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAF 459 (464)
T ss_dssp -HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHH
Confidence 112334666666566655432 2589999876 67888888776543
No 210
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.74 E-value=4.9e-17 Score=184.15 Aligned_cols=286 Identities=14% Similarity=0.119 Sum_probs=187.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++++. +..++++||++|+..+++ +. .++++|++.++.||+........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~--~~~i~~~sG~~ai~~~~~-l~--------~~gd~Vl~~~~~y~~~~~~~~~~----- 125 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGA--KYCLAFASGLAATVTITH-LL--------KAGDQIICMDDVYGGTNRYFRQV----- 125 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHT-TS--------CTTCEEEEESSCCHHHHHHHHHT-----
T ss_pred cCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH-Hh--------CCCCEEEEeCCCcchHHHHHHHH-----
Confidence 346678889999999999863 366667788999999988 42 35688999999998842111000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 126 ----~~~~G~~v~~v~~-----------------~d~~~l~~~i~---~~t~~v~~~~-p~nptG~~~~----l~~i~~l 176 (403)
T 3cog_A 126 ----ASEFGLKISFVDC-----------------SKIKLLEAAIT---PETKLVWIET-PTNPTQKVID----IEGCAHI 176 (403)
T ss_dssp ----GGGGTCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHHcCCEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCeeeC----HHHHHHH
Confidence 0011123444443 26788888775 4678888998 8999999886 9999999
Q ss_pred HHhcC-CeEEEeccccCCCcccccccccccCCCccee--eeccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 452 CNNYN-IHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 452 ~~~~g-~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
|++|| +++|+||+|+++. .+.. .+..+|++ +++|.++| |..++|+++++ +++++.+.. .....
T Consensus 177 a~~~g~~~livD~~~~~~~-~~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~------~~~~~ 244 (403)
T 3cog_A 177 VHKHGDIILVVDNTFMSPY-FQRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF------LQNSL 244 (403)
T ss_dssp HTSSSCCEEEEECTTTCTT-TCCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH------HHHHH
T ss_pred HHHcCCCEEEEECCCcccc-cCCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH------HHHhc
Confidence 99999 9999999998652 2211 23457887 68999986 32468999985 788777654 22334
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCCCceee----eeceeEEEEEEEeec
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKIIN----FRQKGMIWAFDVIIE 591 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~i~~----v~g~G~~~~i~~~~~ 591 (965)
+...+|++++++++.|+.+.. ..++..++...+.+.|++. ..+|++.. .++.|.|+.|.+. .
T Consensus 245 g~~~~~~~~~~~~~~l~~l~~--r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~-~ 321 (403)
T 3cog_A 245 GAVPSPIDCYLCNRGLKTLHV--RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIK-G 321 (403)
T ss_dssp CCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-S
T ss_pred CCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEec-C
Confidence 456789998888888865421 2344444555555555432 22333321 2345889999874 1
Q ss_pred CccchhhHHHHHHHHHHHcCcEEee-----------------------------c--CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 592 DPEQIETFSKKFFVAALKNELLLRP-----------------------------I--GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~Gi~~~~-----------------------------~--~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
. .....+.+.+.|++++. + .+.+|+++.+..++++++.+.++
T Consensus 322 ~-------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~a 394 (403)
T 3cog_A 322 T-------LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQA 394 (403)
T ss_dssp C-------HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHH
Confidence 1 12334555667775431 1 36899999888777777777776
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+...
T Consensus 395 l~~~ 398 (403)
T 3cog_A 395 LKAA 398 (403)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 211
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.74 E-value=6e-17 Score=182.92 Aligned_cols=287 Identities=14% Similarity=0.146 Sum_probs=187.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+++++++++++. +++++++||++|++.+++ .. .++++|++.++.||+... ...
T Consensus 50 ~~~~~~~~~~lr~~la~~~g~--~~~i~~~sGt~a~~~al~-~~--------~~gd~Vi~~~~~y~~~~~-~~~------ 111 (393)
T 1n8p_A 50 SRSQNPNRENLERAVAALENA--QYGLAFSSGSATTATILQ-SL--------PQGSHAVSIGDVYGGTHR-YFT------ 111 (393)
T ss_dssp TTTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHH-TS--------CSSCEEEEESSCCHHHHH-HHH------
T ss_pred ecCCChhHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHH-Hc--------CCCCEEEEeCCCchHHHH-HHH------
Confidence 355677888999999999853 478888889999999998 42 246789999999987421 110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.++|. .| ++|+++++ +++++|++++ ++|++|.+.+ +++|.++
T Consensus 112 --~~~~~~G~~v~~v~~-----------------~d-~~l~~~i~---~~t~lv~~~~-~~nptG~~~~----l~~i~~l 163 (393)
T 1n8p_A 112 --KVANAHGVETSFTND-----------------LL-NDLPQLIK---ENTKLVWIET-PTNPTLKVTD----IQKVADL 163 (393)
T ss_dssp --HTSTTTCSCCEEESS-----------------HH-HHHHHHSC---SSEEEEEECS-SCTTTCCCCC----HHHHHHH
T ss_pred --HHHHHcCcEEEEeCC-----------------Ch-HHHHHhcc---cCceEEEEEC-CCCCcceecC----HHHHHHH
Confidence 000011123444443 36 88888774 4688999998 8999999887 9999999
Q ss_pred HHhc----CCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeec-HHHHHhhhccCCccccc
Q psy8199 452 CNNY----NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTT-DKIYNSIYYKNNINIFL 523 (965)
Q Consensus 452 ~~~~----g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~-~~i~~~~~~~~~~~~~~ 523 (965)
|++| |+++|+||+|+++.+ .... ...+|++ +++|.++++++++ |+++++ +++++.+... .
T Consensus 164 a~~~~~~~~~~livD~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~------~ 231 (393)
T 1n8p_A 164 IKKHAAGQDVILVVDNTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL------Q 231 (393)
T ss_dssp HHHHTTTTTCEEEEECTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH------H
T ss_pred HHHhCCCCCCEEEEeCCcccccc-CCHH-----HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHH------H
Confidence 9999 999999999986533 2221 2247877 6889998755788 888875 7888777541 1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC------CCcee----------eeec-e-eEEEE
Q psy8199 524 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT------HPKII----------NFRQ-K-GMIWA 585 (965)
Q Consensus 524 ~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~------~~~i~----------~v~g-~-G~~~~ 585 (965)
.......++..++++.++++.+. ...++..++.+++.+.|++... +|.+. ..++ . |.++.
T Consensus 232 ~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~ 309 (393)
T 1n8p_A 232 NAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMIS 309 (393)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEE
T ss_pred HhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEE
Confidence 11122346888877777776442 2345555666667666654311 22221 1133 5 78888
Q ss_pred EEEeecCccchhhHHHHHHHHHHHcCcEE----------ee---c---------------CCEEEEeCCcccCHHHHHHH
Q psy8199 586 FDVIIEDPEQIETFSKKFFVAALKNELLL----------RP---I---------------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 586 i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~----------~~---~---------------~~~lR~~p~~~~t~~~i~~~ 637 (965)
|.+. ++ ......+...+...++.+ .| . .+.+||+.....++++++.+
T Consensus 310 ~~l~-~~----~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l 384 (393)
T 1n8p_A 310 FRIK-GG----AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDI 384 (393)
T ss_dssp EEES-SC----HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHH
T ss_pred EEeC-Cc----HHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHH
Confidence 8885 21 112334445443323221 11 0 26899999999999999888
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
.+++.+
T Consensus 385 ~~al~~ 390 (393)
T 1n8p_A 385 KQALKQ 390 (393)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 212
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.73 E-value=1.1e-16 Score=182.39 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=162.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++...+++++++++.+. +..++++||++|+..+++...+ ++++||+.++.|++.. ..+..
T Consensus 109 ~r~~~~~~~~l~~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--------~Gd~Vi~~~~~y~~~~-~~~~~----- 172 (445)
T 1qgn_A 109 GRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALVP--------AGGHIVTTTDCYRKTR-IFIET----- 172 (445)
T ss_dssp GGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHSC--------SSCEEEEETTSCHHHH-HHHHH-----
T ss_pred cCCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEcCCCchhHH-HHHHH-----
Confidence 445678889999999999863 4777788899999999986532 4688999999988742 11100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
........+.+++. .|+++|++++++ +.+++|++|+ ++|++|.+.+ +++|.++
T Consensus 173 ---~~~~~G~~v~~v~~-----------------~d~~~l~~ai~~--~tv~lV~le~-p~NptG~v~d----l~~I~~l 225 (445)
T 1qgn_A 173 ---ILPKMGITATVIDP-----------------ADVGALELALNQ--KKVNLFFTES-PTNPFLRCVD----IELVSKL 225 (445)
T ss_dssp ---TGGGGTCEEEEECS-----------------SCHHHHHHHHHH--SCEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ---HHHHcCCEEEEeCC-----------------CCHHHHHHHhcc--CCCCEEEEeC-CCCCCCcccC----HHHHHHH
Confidence 00111123444443 267889999874 2338899999 8999999887 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|++||+++|+||+|+.+ .. .......+|+++ ++|.++|+. .++|++++++++++.+... ......
T Consensus 226 a~~~g~~livD~a~~~~-~~-----~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~------~~~~g~ 293 (445)
T 1qgn_A 226 CHEKGALVCIDGTFATP-LN-----QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------HHILGG 293 (445)
T ss_dssp HHHTTCEEEEECTTTCT-TT-----CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------HHHHCC
T ss_pred HHHcCCEEEEECCCccc-cc-----CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH------HHHhCC
Confidence 99999999999999632 11 122345689886 789988742 3689999999988877541 111112
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCcee----------eeeceeEEEEEEEe
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~----------~v~g~G~~~~i~~~ 589 (965)
..+|+.++.+++.|+.+.. ..++..++.+++.+.|++... +|++. .+++.|.++.|++.
T Consensus 294 ~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 294 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp CCCHHHHHHHHHHGGGHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CCCHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 2467777777777765431 234455566777777765411 12110 12357889999885
No 213
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.72 E-value=1.2e-16 Score=187.43 Aligned_cols=358 Identities=13% Similarity=0.047 Sum_probs=200.1
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHh-hcCC-----CCCeEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS-LTQY-----KLGHCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~-~~~~-----~~~~v~~~~sGse 325 (965)
+|..+++.....+....++.+|.+++++.+++.. ..|....+..+...++++.+.+ .... +.++|++++|+++
T Consensus 98 ~~~~~l~~~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~e 176 (546)
T 2zy4_A 98 EGVRFLGKSLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTA 176 (546)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHH
T ss_pred CcchhHHhhhecccCCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHH
Confidence 3555333222323334577888899988887753 3344344556677777776543 2211 2479999999999
Q ss_pred HHHHHHHHHHH--HHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFH--YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~--~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|+..++++... +. .+++.|++.+++|+++...+...+. ....+.+|.....+..
T Consensus 177 al~~~~~~l~~~~l~-----~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~-------- 232 (546)
T 2zy4_A 177 AMAYIFESLKLNGLL-----KAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQ-------- 232 (546)
T ss_dssp HHHHHHHHHHHTTSS-----CTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTB--------
T ss_pred HHHHHHHHhhhhhcC-----CCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCC--------
Confidence 99999986421 10 2468899999999998544322110 0112333322111000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH--HhcCCeEEEeccccCCCccccccccccc-
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC--NNYNIHLIADEIAVGCGRTGKFFACEHA- 480 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tg~gr~G~~~~~~~~- 480 (965)
.|+++|++++. .++.+|++.. ++|++|.+. +.+.+++|.++| ++||+++|+||+|.+|....... ....
T Consensus 233 --~d~~~l~~~~~---~~~k~v~l~~-p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~-~~~~~ 304 (546)
T 2zy4_A 233 --YPDSELDKLKD---PAIKIFFCVN-PSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSL-FAICP 304 (546)
T ss_dssp --CCHHHHGGGGS---TTEEEEEEES-SCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCH-HHHCG
T ss_pred --CCHHHHHHhhC---CCCeEEEEEC-CCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCH-HHhCC
Confidence 25677776552 3455555555 599999776 677799999999 88999999999999886421111 1111
Q ss_pred CCCcceeeeccccC-CCcccceeeeecHH-HHHhhhccC----------Ccc-----c---------------ccccCCC
Q psy8199 481 EIWPDFLCLSKGIT-GGYLPLSLVMTTDK-IYNSIYYKN----------NIN-----I---------------FLHSHSY 528 (965)
Q Consensus 481 ~~~pDivt~sK~l~-gG~~pig~v~~~~~-i~~~~~~~~----------~~~-----~---------------~~~~~t~ 528 (965)
+....+.+|||.++ .| +++|+++++++ +++.+.... ... + +....+.
T Consensus 305 ~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 383 (546)
T 2zy4_A 305 ENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTA 383 (546)
T ss_dssp GGEEEEEESTTTTTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGC
T ss_pred CCEEEEEeCccccCCCC-cceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccC
Confidence 11122347899886 45 89999999875 766653100 000 0 0012234
Q ss_pred CCCHHHHHHH-HHHH-HHHhc-ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEee-cCccchh------
Q psy8199 529 SGNPLACCAA-LATL-EIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVII-EDPEQIE------ 597 (965)
Q Consensus 529 ~~~~~~~aaa-~a~L-~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~-~~~~~~~------ 597 (965)
+.+.+++.++ +.++ ..+.+ +...+++++.-+.-++.+.+....+ +....+.|. ++.+++.. .......
T Consensus 384 ~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl 462 (546)
T 2zy4_A 384 GLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMP-PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWA 462 (546)
T ss_dssp SSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGTSS-CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCC-cccCCCCeeEEEEEEHHHhhcccccHHHHHHh
Confidence 5566666553 2111 22322 2333333333222222222211121 222334444 44555420 0000000
Q ss_pred ----hHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 598 ----TFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 598 ----~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.....+.+.+.++||.+.|+ .+++|++.. ..++++++++++++.+.+
T Consensus 463 ~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 519 (546)
T 2zy4_A 463 VKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMA 519 (546)
T ss_dssp HHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHH
Confidence 01223567788999999984 258999965 458889999998887654
No 214
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.72 E-value=3.3e-16 Score=180.02 Aligned_cols=331 Identities=15% Similarity=0.057 Sum_probs=202.5
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+|+.+|.+.... -+|++.+|+.+++.... .++.+...++.+.++++++ .+++++++||++|++.|+
T Consensus 29 ~~~~~i~~~~~~-------~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~g--~~~~i~~~sGt~a~~~al 94 (437)
T 3bb8_A 29 AGKSVVPPSGKV-------IGTKELQLMVEASLDGW-----LTTGRFNDAFEKKLGEYLG--VPYVLTTTSGSSANLLAL 94 (437)
T ss_dssp TTTSCBCSCCCC-------CCHHHHHHHHHHHHHCC-----CBSCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHH
T ss_pred CCCccccCCCCC-------CCHHHHHHHHHHHHcCC-----cCCChHHHHHHHHHHHHHC--CCcEEEeCCHHHHHHHHH
Confidence 366666663321 26899999999887632 2345678899999999995 458999999999999999
Q ss_pred HHHHHHHHhc-CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 332 KMSFHYWYNK-GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 332 ~~a~~~~~~~-g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
+.+..++..+ ...++++|++..++||++.......+. .+.+++.....+. .|+++
T Consensus 95 ~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~-----------~d~~~ 150 (437)
T 3bb8_A 95 TALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGL-------------IPVFVDVDIPTYN-----------VNASL 150 (437)
T ss_dssp HHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTC-------------EEEECCEETTTTE-----------ECGGG
T ss_pred HHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCC-------------EEEEEeccCccCC-----------cCHHH
Confidence 8763111000 013457899999999887544332221 2233332110011 25678
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s 490 (965)
|++++. +++++|++.. ++|...+ +++|.++|++||+++|+||+|+ +|... ....++..+|++++|
T Consensus 151 l~~~i~---~~~~~v~~~~----~~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~~~d~~~~s 215 (437)
T 3bb8_A 151 IEAAVS---DKTKAIMIAH----TLGNLFD----LAEVRRVADKYNLWLIEDCCDA-LGSTY---DGKMAGTFGDIGTVS 215 (437)
T ss_dssp HHHHCC---TTEEEEEEEC----GGGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEE---TTEETTSSSSEEEEE
T ss_pred HHHhcC---CCCeEEEEeC----CCCChhc----HHHHHHHHHHcCCEEEEECccc-cCceE---CCeecccccCEEEEE
Confidence 887774 3566666631 1343344 9999999999999999999997 22211 122344457886543
Q ss_pred ----cccCCCcccceeeeecHHHHHhh-h---ccCCc---------------------------cc---ccccCCCCCCH
Q psy8199 491 ----KGITGGYLPLSLVMTTDKIYNSI-Y---YKNNI---------------------------NI---FLHSHSYSGNP 532 (965)
Q Consensus 491 ----K~l~gG~~pig~v~~~~~i~~~~-~---~~~~~---------------------------~~---~~~~~t~~~~~ 532 (965)
|+++|| ..|+++++++.+..+ . ..+.. .. ...+..+..++
T Consensus 216 ~~~~k~l~~g--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 293 (437)
T 3bb8_A 216 FYPAKHITMG--EGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITD 293 (437)
T ss_dssp CSTTSSSCCS--SCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBH
T ss_pred CcCCcCCCCC--CeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCH
Confidence 678664 578888885543332 1 10000 00 00122334568
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee-----eceeEEEEEEEeecCccchhhHHHHHHHHH
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF-----RQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l 607 (965)
+++++++++|+.+ ++..++.+++.+++.++|+++.....+... .+... +.+.+....+ .....+.+.|
T Consensus 294 ~~aa~~l~~l~~~--~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~l~~~L 366 (437)
T 3bb8_A 294 MQAACGLAQLERI--EEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFG-FPITLKEDSG----VSRIDLVKFL 366 (437)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSS-EEEEECGGGS----SCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEE-EEEEECCcCc----CcHHHHHHHH
Confidence 8999999988765 345666688888898888765211001111 11111 2222320100 1144688889
Q ss_pred HHcCcEEeecC-----------------------------CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 608 LKNELLLRPIG-----------------------------NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 608 ~~~Gi~~~~~~-----------------------------~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.++||.+++.. +.+|++....+|+++++.+++.+.+.
T Consensus 367 ~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~ 432 (437)
T 3bb8_A 367 DEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEF 432 (437)
T ss_dssp HHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999876421 14899989999999999999988654
No 215
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.72 E-value=5.1e-16 Score=177.42 Aligned_cols=316 Identities=13% Similarity=0.115 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHhhccc--cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 272 NSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
+|++.+++.++++.... +....+..+...++++.+++.++ .+++++++||++|++.+++.+.. .++++|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g--~~~~i~~~~gt~al~~~~~~~~~-------~~gd~V 85 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG--VPYCVPTTSGSTALMLALEALGI-------GEGDEV 85 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEE
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCcCEE
Confidence 69999999999876421 22223345568899999999985 44788999999999999987621 256789
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
++.+++|+++.......+. .+..++.....+. .|+++|++++. +++++|+++
T Consensus 86 l~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~~~- 137 (418)
T 2c81_A 86 IVPSLTWIATATAVLNVNA-------------LPVFVDVEADTYC-----------IDPQLIKSAIT---DKTKAIIPV- 137 (418)
T ss_dssp EEESSSCTHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCHHHHGGGCC---TTEEEECCB-
T ss_pred EECCCccHhHHHHHHHcCC-------------EEEEEecCCCCCC-----------cCHHHHHHhhC---CCCeEEEEe-
Confidence 9999999988543322211 2334443211111 26788887774 356777654
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc-ccccccccccCCCccee--ee--ccccCCCcccceeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR-TGKFFACEHAEIWPDFL--CL--SKGITGGYLPLSLVM 504 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr-~G~~~~~~~~~~~pDiv--t~--sK~l~gG~~pig~v~ 504 (965)
+++|...+ +++|.++|++||+++|+||+|+.+.. .+.. .+..+|++ +| +|.+++| ++|+++
T Consensus 138 ---~~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~~~s~s~~K~~~~g--~~g~~~ 203 (418)
T 2c81_A 138 ---HLFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQR-----AGTIGDIGAFSCQQGKVLTAG--EGGIIV 203 (418)
T ss_dssp ---CCTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCSS--SCEEEE
T ss_pred ---CCcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCEe-----cccccceEEEeccCCcccCCC--CeEEEE
Confidence 35676655 99999999999999999999986642 2221 12223444 56 8999874 789988
Q ss_pred ec-HHHHHhhhc---cCCcc---------ccc--------ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 505 TT-DKIYNSIYY---KNNIN---------IFL--------HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 505 ~~-~~i~~~~~~---~~~~~---------~~~--------~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
++ +++++.+.. .+... .+. .+..+..+++.++.+...++.+ +...++.+++.+++.+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~ 281 (418)
T 2c81_A 204 TKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLND 281 (418)
T ss_dssp ESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 84 677665542 11000 011 0111123555554444444433 3356777777888888
Q ss_pred HHHcccCCCceeee-ecee----E--EEEEEEeecCccchhhHHHHHHHHHHHc-CcE---Eeec---------------
Q psy8199 564 ALTSLITHPKIINF-RQKG----M--IWAFDVIIEDPEQIETFSKKFFVAALKN-ELL---LRPI--------------- 617 (965)
Q Consensus 564 ~L~~l~~~~~i~~v-~g~G----~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~---~~~~--------------- 617 (965)
.|.++ |++... ...| . ++.+.+. +..........+.+.|.++ ||. +.++
T Consensus 282 ~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~ 356 (418)
T 2c81_A 282 ALSKI---DGIKVMKRPPQVSRQTYYGYVFRFD--PVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTK 356 (418)
T ss_dssp HHTTS---TTEEECCCCTTEEECCCSEEEEEEC--GGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGC
T ss_pred HhccC---CCcccCCCCCCCcccccEEEEEEEc--cccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccccc
Confidence 77654 444432 2222 2 3334443 1000001144678888888 999 7542
Q ss_pred ----------------C----------CEEEEeCCccc-CHHHHHHHHHhhhccc
Q psy8199 618 ----------------G----------NTVYLMPPYIL-NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ----------------~----------~~lR~~p~~~~-t~~~i~~~~~~l~~~~ 645 (965)
+ +.+|++++..+ ++++++.+++++.+..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 357 NRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp TTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 1 48999999999 9999999999887543
No 216
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.71 E-value=1.3e-15 Score=178.52 Aligned_cols=315 Identities=10% Similarity=0.035 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHH----HhcCCC--CceEEEEEcCCccCCccccccccCCc
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW----YNKGFL--NKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~----~~~g~~--~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+...++.++++++++.+.+.++|++|||+||..|+++++.++ ...|.. ++..|++.+.. |.+...+....+.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~- 225 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGL- 225 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCC-
Confidence 334667788999997666799999999999999999987643 112211 12256666544 5543333322221
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKL 447 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~ 447 (965)
....+..+|.... +. .|+++|+++|++. +.++++|++.. +++++|.+.+ +++
T Consensus 226 --------g~~~v~~v~~~~~-~~-----------~d~~~L~~~i~~~~~~g~~~~~Vv~~~-~~n~tG~i~~----l~~ 280 (515)
T 2jis_A 226 --------GTDSVRVVKADER-GK-----------MVPEDLERQIGMAEAEGAVPFLVSATS-GTTVLGAFDP----LEA 280 (515)
T ss_dssp --------CGGGEEEECBCTT-SC-----------BCHHHHHHHHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHH
T ss_pred --------CCCcEEEEecCCC-Cc-----------CCHHHHHHHHHHHHhCCCCcEEEEEeC-CCCCCCCccC----HHH
Confidence 0013455554321 11 2678888888642 33577888877 7889998887 999
Q ss_pred HHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH--HHHhhhccCCcccc
Q psy8199 448 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK--IYNSIYYKNNINIF 522 (965)
Q Consensus 448 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~--i~~~~~~~~~~~~~ 522 (965)
|.++|++||+++|+|++|+++......+.....++ .+|++++ +|.++++ +++|+++++++ +++..... ..++
T Consensus 281 I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~--~~~y 357 (515)
T 2jis_A 281 IADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGS--QASY 357 (515)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC------
T ss_pred HHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcC--Cchh
Confidence 99999999999999999987755433333334465 7899987 7988766 58899998876 65532110 0001
Q ss_pred cc-----------c------CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee-ceeEEE
Q psy8199 523 LH-----------S------HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR-QKGMIW 584 (965)
Q Consensus 523 ~~-----------~------~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-g~G~~~ 584 (965)
.. . .+.....+++.++++++....-++..++..++.+++.+.|+++ |++..+. +....+
T Consensus 358 l~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~~~~~~~~~~v 434 (515)
T 2jis_A 358 LFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR---EGFELVMEPEFVNV 434 (515)
T ss_dssp -----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTEEESSCCSSSEE
T ss_pred ccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCeeEE
Confidence 10 0 1111224555555555542222346677778888888888764 4444221 223344
Q ss_pred EEEEeec--Ccc-chhhH-------HHHHHHHHHHcCcEEee----cC--CEEEEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 585 AFDVIIE--DPE-QIETF-------SKKFFVAALKNELLLRP----IG--NTVYLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 585 ~i~~~~~--~~~-~~~~~-------~~~~~~~l~~~Gi~~~~----~~--~~lR~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
.+..... .+. ....+ ...+.+.+.+.|++... .+ +++|+++ +...++++++.+++.+.+.
T Consensus 435 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 435 CFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp EEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444211 000 01111 22367788899975532 12 5899999 8889999999999988654
No 217
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.71 E-value=1.8e-15 Score=177.05 Aligned_cols=314 Identities=11% Similarity=0.050 Sum_probs=190.5
Q ss_pred HHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHH----hcCCCC--ceEEEEEcCCccCCccccccccCCc
Q psy8199 299 VIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWY----NKGFLN--KKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 299 ~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~----~~g~~~--~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
..++.++++++++.+ .+.++|++|||+|+..|++.++.++. ..|... +..|++.+.+| .+...+....+.
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h-~s~~~~~~~~g~- 211 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH-YSIKKAGAALGF- 211 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC-THHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcch-HHHHHHHHHcCC-
Confidence 445667788888755 56899999999999999999976421 112110 22466655444 432222221110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKL 447 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~ 447 (965)
+ ...+..+|.... +. .|+++|+++|++. +..+++|++.. +++++|.+.+ +++
T Consensus 212 g--------~~~v~~v~~~~~-~~-----------~d~~~L~~~i~~~~~~g~~~~~V~~~~-~~~~tG~i~~----l~~ 266 (504)
T 2okj_A 212 G--------TDNVILIKCNER-GK-----------IIPADFEAKILEAKQKGYVPFYVNATA-GTTVYGAFDP----IQE 266 (504)
T ss_dssp C--------GGGEEEECBCTT-SC-----------BCHHHHHHHHHHHHHTTCEEEEEEECB-SCSSSCCBCC----HHH
T ss_pred C--------cccEEEEecCCC-CC-----------CCHHHHHHHHHHHHHCCCCceEEEEeC-CCCCCCCcCC----HHH
Confidence 0 013455554321 11 2688898888642 22577777776 6888998877 999
Q ss_pred HHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeeecH-HHHHhhhccCCccccc
Q psy8199 448 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFL 523 (965)
Q Consensus 448 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~~ 523 (965)
|.++|++||+++|+|++|.|+......+.....++ .+|+++++ |.++++ +++|++++++ +++...... ..++.
T Consensus 267 I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~--~~~~l 343 (504)
T 2okj_A 267 IADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM--CAGYL 343 (504)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC--CCSSS
T ss_pred HHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcC--CCccc
Confidence 99999999999999999987643222222223344 68999875 887766 5899999876 465432110 01111
Q ss_pred c-cC----------------CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee---eceeEE
Q psy8199 524 H-SH----------------SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF---RQKGMI 583 (965)
Q Consensus 524 ~-~~----------------t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v---~g~G~~ 583 (965)
. +. +...+++++.++++++..-.-++..++..++.+++.+.|+++ +++..+ .+.+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~p~~~~ 420 (504)
T 2okj_A 344 FQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR---EEFEMVFNGEPEHTN 420 (504)
T ss_dssp CCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---TTEEESSSSCCSSSC
T ss_pred cCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEEecCCCCeEE
Confidence 1 11 112246677766666642212335667777888888877654 455433 244555
Q ss_pred EEEEEeecC--c----cch----hhHHHHHHHHHHHcCcE-Eee--c-C--CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 584 WAFDVIIED--P----EQI----ETFSKKFFVAALKNELL-LRP--I-G--NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 584 ~~i~~~~~~--~----~~~----~~~~~~~~~~l~~~Gi~-~~~--~-~--~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
+.|...... . ... ......+.+.|.++|++ +.+ . + +++|+++. ...++++++.+++++.+..
T Consensus 421 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 421 VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp EEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 555543110 0 000 11234678889999954 332 2 2 48999985 7789999999999887543
No 218
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.68 E-value=5.9e-15 Score=170.24 Aligned_cols=334 Identities=8% Similarity=-0.037 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCCCCe-----EEEcCChhHHHHHHHHHHHHHHHh---
Q psy8199 270 HSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-----CFYGSDGASAVEVALKMSFHYWYN--- 340 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~~~~-----v~~~~sGseA~~~Al~~a~~~~~~--- 340 (965)
+.+|.+.+++.++++.. .++..+....+...++.+.++++++...+. +++++|||||+..|+..++..+..
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999998877642 111111122344567788889988755443 899999999999999988753321
Q ss_pred -cCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy8199 341 -KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418 (965)
Q Consensus 341 -~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 418 (965)
.|.. .+++||+.+ +|.+...+....| ..++.+|.....+. .|+++|+++|++
T Consensus 133 ~~G~~~~~~~vi~~~--~h~~~~~~~~~~G------------~~v~~v~~~~~~~~-----------~d~~~l~~~i~~- 186 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP--VQICWHKFARYWD------------VELREIPMRPGQLF-----------MDPKRMIEACDE- 186 (452)
T ss_dssp HTTCCCSCCEEEESS--CCHHHHHHHHHTT------------CEEEECCCBTTBCS-----------CCHHHHHHHCCT-
T ss_pred hcCCCCCCcEEEECC--CcHHHHHHHHHcC------------ceEEEEecCCCCCe-----------ECHHHHHHHHhh-
Confidence 2211 135677766 5544222222111 13444444221111 268899988853
Q ss_pred CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCeEEEeccccCCCc--ccccccccccCC-Ccceeee
Q psy8199 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR--TGKFFACEHAEI-WPDFLCL 489 (965)
Q Consensus 419 ~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr--~G~~~~~~~~~~-~pDivt~ 489 (965)
++.+|++.. +++++|.+.+ +++|.++|++| |+++|+|++|.++.. ........ +.. ..|.+++
T Consensus 187 --~t~~v~~~~-~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~ 258 (452)
T 2dgk_A 187 --NTIGVVPTF-GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISA 258 (452)
T ss_dssp --TEEEEECBB-SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEE
T ss_pred --CCEEEEEEc-CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEE
Confidence 456666655 5788999887 99999999996 999999999987532 01101111 111 3577766
Q ss_pred c--cccCCCcccceeeeecHH-HH-HhhhccCCcccccc--------cCCCCC-CHHHHHHHHHHHHHHhcccHHHHHHH
Q psy8199 490 S--KGITGGYLPLSLVMTTDK-IY-NSIYYKNNINIFLH--------SHSYSG-NPLACCAALATLEIFNKDNILQRISQ 556 (965)
Q Consensus 490 s--K~l~gG~~pig~v~~~~~-i~-~~~~~~~~~~~~~~--------~~t~~~-~~~~~aaa~a~L~~~~~~~~~~~~~~ 556 (965)
+ |.+.+| +.+|+++++++ ++ +.+... ..+.. .++-.+ ..+++.+++..|..-.-++..++..+
T Consensus 259 ~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~ 334 (452)
T 2dgk_A 259 SGHKFGLAP-LGCGWVIWRDEEALPQELVFN---VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQ 334 (452)
T ss_dssp ETTTTTCCC-SSCEEEEESSGGGSCGGGCEE---ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCC-CCeEEEEEcCHHHHHHHhccC---ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 854444 78999998643 33 443210 00110 111111 23344444444321111235666777
Q ss_pred HHHHHHHHHHcccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c----CCEEEE
Q psy8199 557 DMKKITKALTSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----GNTVYL 623 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~----~~~lR~ 623 (965)
+.+++.+.|+++ +++..+. ....++.+.+. .. .........+.+.|.++|+.++. . .+.+|+
T Consensus 335 ~a~~l~~~L~~~---~~~~~~~~~~~~~~~~~v~f~~~-~~-~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi 409 (452)
T 2dgk_A 335 VAAYLADEIAKL---GPYEFICTGRPDEGIPAVCFKLK-DG-EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRI 409 (452)
T ss_dssp HHHHHHHHHHTT---SSEEEEEECCTTTBSSEEEEEEC-TT-CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEE
T ss_pred HHHHHHHHHHhC---CCeEEecCCCCCCCeEEEEEEec-Cc-ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEE
Confidence 778888877664 4444332 35567777664 11 00000124688889999996542 1 248999
Q ss_pred eCCcccCHHHHHHHHHhhhcccc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.....|.++++.+++.+.+...
T Consensus 410 s~~~~~t~e~id~li~~l~~~~~ 432 (452)
T 2dgk_A 410 MCRRGFEMDFAELLLEDYKASLK 432 (452)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHH
Confidence 98888899999999998876543
No 219
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.67 E-value=2.2e-15 Score=166.44 Aligned_cols=198 Identities=19% Similarity=0.312 Sum_probs=154.7
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCC---CCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYN---TEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~---~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i 759 (965)
..+++ |++|+++|.||.....+. ........++.+++.+.++.+.+.|++.|.|+||+ |+...+ +.++++.+
T Consensus 16 l~i~~-T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGE-Pll~~~---l~~li~~~ 90 (340)
T 1tv8_A 16 LRLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGE-PLMRRD---LDVLIAKL 90 (340)
T ss_dssp EEEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSC-GGGSTT---HHHHHHHH
T ss_pred EEEEe-CCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC-ccchhh---HHHHHHHH
Confidence 44667 999999999997654111 11123455899999999999999999999998764 544433 56777777
Q ss_pred HhcCc--EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 760 KKIGL--ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 760 ~~~~~--~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
++.+. .+.+ ++|.+..+.++.|+++|++.+.+++|+ +++.++.+++.. ++++++++++.++++|+++..++++..
T Consensus 91 ~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv~~ 170 (340)
T 1tv8_A 91 NQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQK 170 (340)
T ss_dssp TTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred HhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeC
Confidence 76532 3333 445555679999999999999999999 899999999877 999999999999999999988888855
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC-CCCCCCHHHHHHHHHH
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSSILDPLEFIRTIAV 888 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~-~~~~~~~~~~~~~ia~ 888 (965)
+++.+++.+.++++++++ ++ +.+..++|.++++.+ .....+.+++++.+..
T Consensus 171 g~n~~ei~~~~~~~~~~g--~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~ 222 (340)
T 1tv8_A 171 GINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQ 222 (340)
T ss_dssp TTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--Ce-EEEEEeeEcCCCccchhhcCCCHHHHHHHHHh
Confidence 789999999999999998 55 677778999988653 2345677887776653
No 220
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.67 E-value=1.1e-15 Score=173.58 Aligned_cols=297 Identities=9% Similarity=-0.012 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 271 SNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
++++|++|+.++.... .......+......++++.+++.++ .+...+ ++||++|++.+++... .
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g--~~~~~~~i~~~sGt~Ai~~al~al~--------~ 105 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFG--AEAGLVRPQIISGTHAISTALFGIL--------R 105 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTT--CSEECCBTTSCSHHHHHHHHHHTTC--------C
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhC--CCcccccceeeCHHHHHHHHHHHhC--------C
Confidence 4678888888753221 1222234566778899999999985 343333 5699999999998653 2
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++++|++.++..|+.+.....+++. ++..+......+.+++.... +. .|+++|+++++ +++++
T Consensus 106 ~Gd~Vl~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~-~~-----------~d~e~l~~~l~---~~tk~ 168 (431)
T 3ht4_A 106 PGDELLYITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEG-GL-----------VDFEAVAAAIH---SNTKM 168 (431)
T ss_dssp TTCEEEECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTT-SS-----------BCHHHHHHHCC---TTEEE
T ss_pred CCCEEEEeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCC-CC-----------cCHHHHHhhcC---CCCeE
Confidence 5678999884455555555554442 22233333344555554321 11 37889988885 46788
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCc-cc
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LP 499 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~-~p 499 (965)
|++++..+|++|. ..+...+++|.++|++ +|+++|+||+|..+....... .++ .|++ +++|.++||+ .+
T Consensus 169 V~i~~sp~np~~~-~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g--~Di~~~S~sK~lgg~~~~~ 242 (431)
T 3ht4_A 169 IGIQRSKGYATRP-SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVG--ADLMAGSLIKNPGGGIVKT 242 (431)
T ss_dssp EEEECSCTTSSSC-CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTT--CSEEEEETTSGGGTTTCSS
T ss_pred EEEECCCCCCCCC-cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccC--CeEEEcCccccCCCCCCCc
Confidence 8888315666665 4477889999999999 999999999998775433322 123 4655 6899998853 34
Q ss_pred ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-C-CCceeee
Q psy8199 500 LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-T-HPKIINF 577 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-~-~~~i~~v 577 (965)
.|++++++++++.+.... .....+.+.+.++..+++++..|+.+ +...++..++.+++.+.|+++. + .|. ...
T Consensus 243 GG~v~~~~~li~~l~~~~--~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~ 317 (431)
T 3ht4_A 243 GGYIVGKEQYVEACAYRL--TSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNA 317 (431)
T ss_dssp CEEEEECHHHHHHHHHHH--SCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTS
T ss_pred eEEEEecHHHHHHHHHHh--ccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCC
Confidence 578889999888775410 01112222322222234455555544 3456778888888988888762 1 122 234
Q ss_pred eceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 578 RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 578 ~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
++.++++.+.+. + .....++.+.|.+..
T Consensus 318 ~~~~li~~i~l~--~----~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 318 PRTDLIQSVQFD--D----KDRMIAFCQAIQYAS 345 (431)
T ss_dssp CCSSSCCEEECC--C----HHHHHHHHHHHHHTS
T ss_pred CCccEEEEEEeC--C----HHHHHHHHHHHHhcC
Confidence 455668888774 2 223446777777764
No 221
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.66 E-value=1.9e-15 Score=174.34 Aligned_cols=334 Identities=11% Similarity=0.047 Sum_probs=195.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhh-ccc--------cc-cCC-----CCcHHHHHHHHHHHhhcCCCCCe
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEH--------VM-LSN-----LTHKPVIKLSEKLSSLTQYKLGH 316 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~--------~~-~~~-----~~~~~~~~la~~l~~~~~~~~~~ 316 (965)
+++.|+|..+. |..++.|.+++...... ..+ .+ ... ...+...++.++++++++...+
T Consensus 79 ~~~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~- 151 (456)
T 2z67_A 79 DTDKDPKSVRI------GEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH- 151 (456)
T ss_dssp BGGGCTTCEEC------SSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-
T ss_pred ccccccccccc------ccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-
Confidence 45678887654 22566777776653210 000 00 000 0223446788889999875545
Q ss_pred EEEcCChh-HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCC
Q psy8199 317 CFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRN 393 (965)
Q Consensus 317 v~~~~sGs-eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 393 (965)
++|++||| .++..++..++.+. +++.||+.+.. |.+...+....| ..+..++.. +..+
T Consensus 152 ~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~~-h~s~~~~~~~~G------------~~~~~v~~~~~~~~~ 212 (456)
T 2z67_A 152 AIATPISTGMSISLCLSAARKKY------GSNVVIYPYAS-HKSPIKAVSFVG------------MNMRLVETVLDGDRV 212 (456)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECCC-CHHHHHHHHHTT------------CEEEEECCEEETTEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECCC-cHHHHHHHHHcC------------CCceEEEEeccCCCC
Confidence 99999999 56776777765531 34567777774 444332222222 122333321 1111
Q ss_pred CCCCCChhHHHHHHHHHHHHHH-HhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc
Q psy8199 394 INKGNSANEIARCAIFDLEILL-KKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 471 (965)
Q Consensus 394 ~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~ 471 (965)
. .|+++|+++| +.. ..++.+|++.. .++++|.+.+ +++|.++|++||+++|+||+|.++..
T Consensus 213 ~-----------~d~~~l~~~i~~~~~~~~~~~vv~~~-~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~- 275 (456)
T 2z67_A 213 Y-----------VPVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN- 275 (456)
T ss_dssp E-----------CCHHHHHHHHHHHHHTTCCEEEEEES-SCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH-
T ss_pred C-----------cCHHHHHHHHHHHhhCCCeEEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH-
Confidence 1 3688999988 421 12455554444 4788999887 99999999999999999999876532
Q ss_pred cc-cccccc-cCCCcceeee--ccccCCCcccceeeee-cHHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHH
Q psy8199 472 GK-FFACEH-AEIWPDFLCL--SKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIF 545 (965)
Q Consensus 472 G~-~~~~~~-~~~~pDivt~--sK~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~ 545 (965)
|. ...... .+ .+|++++ +|.+.++ +++|++++ ++++++.+.. ...+. ..++ .+++.+++..+...
T Consensus 276 g~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~------~~~g~-~~~~~~~~~~aal~~l~~~ 346 (456)
T 2z67_A 276 YYLEKLKKAFKY-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISL------SYPGR-ASATPVVNTLVSLLSMGSK 346 (456)
T ss_dssp HHHHHHHHHHTS-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHT------TSCSC-BCSHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhCC-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCc------CCCCC-CCCCHHHHHHHHHHHHHHH
Confidence 21 111111 12 6888866 6866555 68999999 5677776643 11222 1222 23333333333211
Q ss_pred hcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc---EEe-------
Q psy8199 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL---LLR------- 615 (965)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi---~~~------- 615 (965)
.-++..++..++.+++.+.|+++...+++..+.+. .++.+.+. .+. ....+.+.|.++|+ -+.
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v~~~~~-~~~-----~~~~l~~~L~~~gi~~~rv~~~~g~f~ 419 (456)
T 2z67_A 347 NYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCIS-VNS-----DPVEIAAKLYNLRVTGPRGIKKTDHFG 419 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEE-CSS-----CHHHHHHHHHHTTEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-CeEEEEEe-ccc-----HHHHHHHHHHHcCCCcceEEeecCccc
Confidence 11345778888889999988876310122222233 44555552 110 13457788888885 232
Q ss_pred -----e-cCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 616 -----P-IGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 616 -----~-~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
. ..+.+|++.++..++++++++++++.+.
T Consensus 420 G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 420 NCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp HTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cccccccCcchhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 1 1368999998889999999999998764
No 222
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.66 E-value=1.8e-16 Score=181.90 Aligned_cols=283 Identities=10% Similarity=0.026 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
+.....++.+.+++ ++.. +.+++++||++|+..+++++. .++++|++.+++|++........+..
T Consensus 55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~----- 119 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQE----- 119 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCC-----
T ss_pred cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCe-----
Confidence 44566788888888 8643 578899999999999999773 25688999999887764433332221
Q ss_pred hhcccCCCeeEecC--CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 375 IYTSLLNKTYIITT--PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 375 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.++++. ....+...+ .|+++| + .+++++|++.+ .+++|.+.+ +++|.++|
T Consensus 120 --------~~~v~~~~~~~~~~~~~--------~d~~~l---~---~~~~~~v~~~~--~n~~G~~~~----l~~I~~l~ 171 (446)
T 2x3l_A 120 --------GHFIETHQSPLTNHYNK--------VNLSRL---N---NDGHKLVVLTY--PNYYGETFN----VEEVIKSL 171 (446)
T ss_dssp --------EEECEEEECTTTSSEEE--------EEC-------------CCEEEEES--SCTTSCCCC----HHHHHHHH
T ss_pred --------EEEEeCeeccccCcCCC--------CCHHHH---c---CCCceEEEEEC--CCCCeEecC----HHHHHHHH
Confidence 122221 110000000 123344 2 23456666666 345888876 89999999
Q ss_pred HhcCCeEEEeccccC-CCcccccccccccCCCcceeeec--cccCCCcccceeeeecHHHHH--hhhccCCcccccccCC
Q psy8199 453 NNYNIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYN--SIYYKNNINIFLHSHS 527 (965)
Q Consensus 453 ~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~--~~~~~~~~~~~~~~~t 527 (965)
++||+++|+||+|++ +...+..+. .....+|++++| |.++|+ .++|++++++++++ .+... .....+
T Consensus 172 ~~~~~~livDea~~~~~~f~~~~~~--~~~~g~Di~~~S~~K~l~~~-~g~g~l~~~~~~i~~~~~~~~-----~~~~~~ 243 (446)
T 2x3l_A 172 HQLNIPVLIDEAHGAHFGLQGFPDS--TLNYQADYVVQSFHKTLPAL-TMGSVLYIHKNAPYRENIIEY-----LSYFQT 243 (446)
T ss_dssp HHTTCCEEEECTTCTTTTSTTSCCC--GGGGTCSEEEECHHHHSSSC-TTCEEEEEETTCTTHHHHHHH-----HHHHSC
T ss_pred HhcCCeEEEcchhhhhhccCCCCCC--hHHcCCCEEEECCccccccc-cccEEEEEcCCcCCHHHHHHH-----HHHHcC
Confidence 999999999999986 222222122 222347888765 988776 57899999887654 22210 111233
Q ss_pred CCCCHHHHHHHHHHHHHHhcc--c-HHHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHH
Q psy8199 528 YSGNPLACCAALATLEIFNKD--N-ILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKF 603 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~--~-~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~ 603 (965)
.+.+...+++..++++.+... + +.++.+++.+++++. ++..+.. .+..+.+.+. . .....+
T Consensus 244 ~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~--~-----~~~~~l 308 (446)
T 2x3l_A 244 SSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYE--G-----FTGHDI 308 (446)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECT--T-----SCHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeC--C-----cCHHHH
Confidence 445677777766777776642 2 667777777777665 1222211 2334444432 1 113457
Q ss_pred HHHHHHcCcEEe-ecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 604 FVAALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 604 ~~~l~~~Gi~~~-~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+.|.++||.+. ++.+++|++++...+++++ ++++++.+.
T Consensus 309 ~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~ 349 (446)
T 2x3l_A 309 QNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKI 349 (446)
T ss_dssp HHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHH
T ss_pred HHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHH
Confidence 788888999998 5557999999988899888 888877654
No 223
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.65 E-value=4.5e-15 Score=167.33 Aligned_cols=354 Identities=10% Similarity=-0.013 Sum_probs=204.6
Q ss_pred cCCcccccccccchhccCCCCC--HHHHHHHHHHHhhc-cc-cccCCCCcHHHHHHHHHHHhhc-CCCCCeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSN--SYINKALKNQLNKL-EH-VMLSNLTHKPVIKLSEKLSSLT-QYKLGHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~--p~v~~av~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~-~~~~~~v~~~~sGse 325 (965)
.|++.-+|+.-|.+-..-|..+ |.|.+|.+..++.. ++ |....+..+.+..+++.+.... +.+.....-+.|||.
T Consensus 41 ~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 41 AAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp HCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHH
T ss_pred cCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchH
Confidence 3445578887776556666543 77888876666543 33 4444555556666655543221 111123445899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|...++..+.... ..+++.|++.+++|..+.......++.. +...+....... .
T Consensus 121 a~~~a~~~l~~~~----~~pgd~V~ip~P~w~~y~~i~~~aG~~~------------V~~~~~~~~~~~----------~ 174 (420)
T 4h51_A 121 AVSLGAKLLTRVF----DAETTPIYLSDPTWPNHYGVVKAAGWKN------------ICTYAYYDPKTV----------S 174 (420)
T ss_dssp HHHHHHHHHTTTS----CTTTSCEEEEESCCTHHHHHHHHTTCCC------------EEEEECEEGGGT----------E
T ss_pred HHHHHHHHHHHhc----CCCCCEEEEecCCchhHHHHHHHcCCeE------------EEeecccccccc----------C
Confidence 9988887664421 1356889999999977643333333211 111111100000 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---cccccc-cC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEH-AE 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~-~~ 481 (965)
.|.+.+.+.+...+++..++++.+ .+|++|... +.+.+++|.++|+++++++|+||+|.||...+. .+.... .+
T Consensus 175 ~d~~~~~~~l~~~~~~~~vll~~~-p~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~ 252 (420)
T 4h51_A 175 LNFEGMKKDILAAPDGSVFILHQC-AHNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFAR 252 (420)
T ss_dssp ECHHHHHHHHHHSCSSCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHhccCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHh
Confidence 245666666766666777788877 799999765 888899999999999999999999999964332 111111 12
Q ss_pred CCccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHH--H----h--ccc
Q psy8199 482 IWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEI--F----N--KDN 549 (965)
Q Consensus 482 ~~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~--~----~--~~~ 549 (965)
..+.++ +|||.++--+|++|++++..+..+....-...-.....++++ .+..++.++...|.- + + -+.
T Consensus 253 ~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~ 332 (420)
T 4h51_A 253 RGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSA 332 (420)
T ss_dssp TTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 223343 689966542299999887543332221100000011223333 445566666665531 1 0 123
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcc
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 628 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~ 628 (965)
..++++++++.|.+.|+++.....+.. .+..|+|...-+. . +..+.|.++||++.++| ||+.+ .
T Consensus 333 m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls-------~----e~v~~L~e~~Vy~~~~g---Ris~A-g 397 (420)
T 4h51_A 333 MAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS-------K----AQCEYCQNHNIFITVSG---RANMA-G 397 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC-------H----HHHHHHHHTTEECCTTC---EEEGG-G
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC-------H----HHHHHHHhCCEEEcCCC---EEEec-c
Confidence 456666777777777766521111222 2345655433221 1 23467789999988865 88742 4
Q ss_pred cCHHHHHHHHHhhhccccc
Q psy8199 629 LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~ 647 (965)
.+++.++.+.+++.+++.+
T Consensus 398 l~~~ni~~~a~aI~~vvr~ 416 (420)
T 4h51_A 398 LTHETALMLAQTINDAVRN 416 (420)
T ss_dssp CCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6899999999988776544
No 224
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.64 E-value=1.4e-15 Score=172.26 Aligned_cols=292 Identities=11% Similarity=0.077 Sum_probs=185.7
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+++++++++.+ .+.+++++||++|+..+++... .++++||+.++.|++.... +.
T Consensus 76 y~r~~~p~~~~le~~lA~l~g--~~~~i~~ssGt~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~-~~----- 139 (415)
T 2fq6_A 76 YGRRGTLTHFSLQQAMCELEG--GAGCVLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDF-CS----- 139 (415)
T ss_dssp CTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEETTSCHHHHHH-HH-----
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHH-HH-----
Confidence 355678889999999999985 4577788999999999988542 2568899999998875211 10
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.........+.+++. .|+++|+++++ +++++|++|. ++|++|.+.+ +++|.+
T Consensus 140 ---~~l~~~G~~v~~v~~-----------------~d~~~le~ai~---~~tklV~~e~-~~NptG~v~d----l~~I~~ 191 (415)
T 2fq6_A 140 ---KILSKLGVTTSWFDP-----------------LIGADIVKHLQ---PNTKIVFLES-PGSITMEVHD----VPAIVA 191 (415)
T ss_dssp ---HTGGGGTCEEEEECT-----------------TCGGGGGGGCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred ---HHHHHcCcEEEEECC-----------------CCHHHHHHhhc---cCCcEEEEEC-CCCCCCEeec----HHHHHH
Confidence 000111123344432 25677877774 4578899998 8999999887 999999
Q ss_pred HHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcc-cceeeeecHHHHHhhhccCCccccccc
Q psy8199 451 ICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYL-PLSLVMTTDKIYNSIYYKNNINIFLHS 525 (965)
Q Consensus 451 l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~-pig~v~~~~~i~~~~~~~~~~~~~~~~ 525 (965)
+|++ ||+++|+|++|... ..+... ....|++ +++|.++++.. ..|++++++++++.+.... ...+
T Consensus 192 la~~~~~g~~livD~a~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~----~~~G 261 (415)
T 2fq6_A 192 AVRSVVPDAIIMIDNTWAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMG 261 (415)
T ss_dssp HHHHHCTTCEEEEECTTTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH----HHTT
T ss_pred HHHhhcCCCEEEEECCCccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH----HhcC
Confidence 9999 99999999998632 111111 2346887 56899887433 3588888888777665410 0112
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEee
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVII 590 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~~ 590 (965)
...+|..++.++..++.+.. ..++..++.+.+.+.|++.. .+|++.. .++.|.++.|.+.
T Consensus 262 --~~~~~~~a~~~~~~l~~l~~--r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~- 336 (415)
T 2fq6_A 262 --QMVDADTAYITSRGLRTLGV--RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK- 336 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-
T ss_pred --CCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-
Confidence 23467777777777765532 34555666777777776531 1232211 1246788888885
Q ss_pred cCccchhhHHHHHHHHHHHcCc----------EEe--e--------------cCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 591 EDPEQIETFSKKFFVAALKNEL----------LLR--P--------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~Gi----------~~~--~--------------~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+. .. ......+.+.+...++ ... | .++.+||+..+..++++++.+.+++..
T Consensus 337 g~-~~-~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 337 KK-LN-NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SC-CC-HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CC-CC-HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 11 00 1112333333321121 111 1 136899999999999989888887754
No 225
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.63 E-value=6.1e-15 Score=167.42 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=162.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++.+ .+.+++++||++|+..+++.+. .++++|++.++.|++......
T Consensus 77 ~r~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~------- 139 (430)
T 3ri6_A 77 SRSSNPTVEDLEQRLKNLTG--ALGVLALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQ------- 139 (430)
T ss_dssp ---CCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHH-------
T ss_pred cCCCCHHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHH-------
Confidence 45678889999999999985 4668888899999999998763 367889999999987632110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 140 --~~~~~~G~~~~~v~~-----------------~d~~~l~~ai~---~~t~~v~~e~-p~NptG~~~d----l~~i~~l 192 (430)
T 3ri6_A 140 --KTLPSFGIEVRFVDV-----------------MDSLAVEHACD---ETTKLLFLET-ISNPQLQVAD----LEALSKV 192 (430)
T ss_dssp --THHHHTTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred --HHHHHcCCEEEEeCC-----------------CCHHHHHHhhC---CCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 011111223445443 26788888874 4688999998 8999999887 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeee---cHHH------------------H
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMT---TDKI------------------Y 510 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~---~~~i------------------~ 510 (965)
|++||+++|+||+++ . +.......+|....+.+++|.++|+...+|.++. +..+ +
T Consensus 193 a~~~g~~livD~a~~-~---~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i 268 (430)
T 3ri6_A 193 VHAKGIPLVVDTTMT-P---PYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFL 268 (430)
T ss_dssp HHTTTCCEEEECTTS-C---TTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHH
T ss_pred HHHcCCEEEEECCCc-c---cccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHH
Confidence 999999999999986 2 2222222344433334678999874234555444 2111 1
Q ss_pred HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee------------
Q psy8199 511 NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR------------ 578 (965)
Q Consensus 511 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~------------ 578 (965)
+..... .........+|..++.++..++.+.. ..++..++.+++.+.|++. |.+..|.
T Consensus 269 ~~~~~~-----~~~~~g~~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~~~---p~v~~V~~P~l~~~p~~~~ 338 (430)
T 3ri6_A 269 YKARKE-----VFQNLGPSLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLLSI---PQVKCVNHPSLPDSPFYAI 338 (430)
T ss_dssp HHHHHT-----HHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTC---TTCEEEECTTSTTSTTHHH
T ss_pred HHHHHH-----HHHhcCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhCC---CCccEEECCCCCCCccHHH
Confidence 111110 00111223467877777777776542 3456667777777777543 4444332
Q ss_pred -----ceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 579 -----QKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 579 -----g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
|.|. |++|++. + ...+.+|.+.+.-.++.
T Consensus 339 ~~~~~g~Gg~~lsf~l~--~----~~~~~~~~~~l~~~~~~ 373 (430)
T 3ri6_A 339 AKRQFRYAGSILTFELE--S----KEASYRFMDALKLIRRA 373 (430)
T ss_dssp HHHHCSSCCSEEEEECS--S----HHHHHHHHHHCSSSEEC
T ss_pred HHHhCCCCceEEEEEEC--C----HHHHHHHHHhCCcceec
Confidence 3477 9999885 2 22344565655544443
No 226
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.63 E-value=6.2e-15 Score=162.78 Aligned_cols=203 Identities=12% Similarity=0.118 Sum_probs=156.9
Q ss_pred CCCCCCCCCCCCCCcCCC-CcccccCCCHHHHHHHHHHHHHC--------------------CCCEEEEeeccCCCCccc
Q psy8199 690 GGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD--------------------GATRFCMGAAWRELKDRD 748 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~--------------------g~~~i~l~~g~~~~~~~~ 748 (965)
++|+++|.||..+..... .....+.+++++|++++....+. .++.+.|++|+.|+...
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~- 157 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP- 157 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-
Confidence 799999999987542111 11134568999999888765331 25678897566675542
Q ss_pred HHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH
Q psy8199 749 LDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN 821 (965)
Q Consensus 749 ~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~ 821 (965)
.+.++++.+++.++.+.+ ++|.+ ++.++.|+++| ++.+.+++++ +++.++++++ ..++++.+++++.+++
T Consensus 158 --~l~~ll~~~~~~g~~i~l~TNG~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~ 234 (342)
T 2yx0_A 158 --YMGDLVEEFHKRGFTTFIVTNGTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRD 234 (342)
T ss_dssp --THHHHHHHHHHTTCEEEEEECSCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHCCCcEEEEcCCCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHh
Confidence 577777777777777666 45555 88899999998 9999999999 8999999987 4579999999999999
Q ss_pred cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCce
Q psy8199 822 VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG--TPLYGSSILDPLEFIRTIAVARITMPTSRI 898 (965)
Q Consensus 822 ~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g--T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i 898 (965)
.|+++...+++..|++.+++.+.++++++++ ++.+.+.+|.|.++ +++....+++.+++.+....++..+|...|
T Consensus 235 ~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~--~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~~I 311 (342)
T 2yx0_A 235 LPTRTVVRLTLVKGENMHSPEKYAKLILKAR--PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGYHI 311 (342)
T ss_dssp CSSEEEEEEEECTTTTCCCHHHHHHHHHHHC--CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCCEEEEEEEECCccHHHHHHHHHHHHHcC--CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCCce
Confidence 9999998888866788888999999999999 89888888887654 455445577899999999999998877555
No 227
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.62 E-value=1.3e-14 Score=169.11 Aligned_cols=352 Identities=9% Similarity=-0.010 Sum_probs=201.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc-cccCCCCcHHHHHHHHHHHhhcCCC--CC---eEEEcCChh
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQYK--LG---HCFYGSDGA 324 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~--~~---~v~~~~sGs 324 (965)
.+|+..+.+.+- .-...+|.+.+++.+.++.... ........+...++.++++++++.. .+ ...+++||+
T Consensus 52 l~gnp~~~l~s~----~t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggt 127 (502)
T 3hbx_A 52 LDGNPRLNLASF----VTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS 127 (502)
T ss_dssp GSCCGGGBTTCC----SCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHH
T ss_pred cCCCCCceeccc----cCCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHH
Confidence 456655554321 0123589999999887765311 1111112334456777888888654 23 345699999
Q ss_pred HHHHHHHHHHHHHHHh----cCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCC
Q psy8199 325 SAVEVALKMSFHYWYN----KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~----~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (965)
+|+..++.+++..+.. .|.. .+..|++.+.+|..+...+ ... ..++..+|.....+.
T Consensus 128 ea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~-~~~------------G~~~~~v~~~~~~~~----- 189 (502)
T 3hbx_A 128 EAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFA-RYF------------EVELKEVKLSEGYYV----- 189 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHH-HHT------------TCEEEEECCBTTBCS-----
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHH-HHc------------CceeEEEecCCCcCc-----
Confidence 9999999877654321 1321 2236777766654332211 111 123455554322122
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCeEEEeccccCCCc--c
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR--T 471 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr--~ 471 (965)
.|+++|++++.+ ++.+|++.. +++++|.+.+ +++|.++|+++ |+++|+|++|.|+.. .
T Consensus 190 ------~d~~~l~~~i~~---~t~~v~~~~-~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~ 255 (502)
T 3hbx_A 190 ------MDPQQAVDMVDE---NTICVAAIL-GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL 255 (502)
T ss_dssp ------CCHHHHHHHCCT---TEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred ------CCHHHHHHHHhh---CCEEEEEec-CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhh
Confidence 278899888853 455565554 5888999887 99999999999 999999999986531 0
Q ss_pred cccccccccCCCcceeee--ccccCCCcccceeeeec-HHHH-HhhhccCCc-ccccccCC--CCCCHHHHHHHHHHHHH
Q psy8199 472 GKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT-DKIY-NSIYYKNNI-NIFLHSHS--YSGNPLACCAALATLEI 544 (965)
Q Consensus 472 G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~-~~i~-~~~~~~~~~-~~~~~~~t--~~~~~~~~aaa~a~L~~ 544 (965)
.............|.+++ .|.+.++ ..+|+++.+ ++.+ +.+...... .......+ ++-+....++..++|+.
T Consensus 256 ~~~~~~~~~~~~~D~v~~s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~ 334 (502)
T 3hbx_A 256 YPELEWDFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (502)
T ss_dssp CTTCCCSTTSTTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHH
T ss_pred CcccccccCCCCceEEEECcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHH
Confidence 111111111113577654 4655444 578877765 3433 222110000 00000011 22222233444445554
Q ss_pred Hhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee---
Q psy8199 545 FNK---DNILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--- 616 (965)
Q Consensus 545 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--- 616 (965)
+.. ....++..++.++|.+.|+++ +++..+.. ...++.|.+. .+. ......+.+.|.++|+++..
T Consensus 335 lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~-~~~---~~~~~~l~~~L~~~Gi~v~~~~~ 407 (502)
T 3hbx_A 335 LGHEGYRNVMENCRENMIVLREGLEKT---ERFNIVSKDEGVPLVAFSLK-DSS---CHTEFEISDMLRRYGWIVPAYTM 407 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---TCEEECSCSSSSSEEEEEES-SCS---SCCHHHHHHHHHTTTCBCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEeCCCCceEEEEEec-CCC---cCCHHHHHHHHHhCCcEEeeccC
Confidence 433 335666777788888888765 44544433 5567777764 211 11133678899999998642
Q ss_pred -c----CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 617 -I----GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 617 -~----~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
. ...+|++....++.++++.+++.+.+++.
T Consensus 408 p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 408 PPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp CTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1 14799999888999999999998876553
No 228
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.61 E-value=3.7e-14 Score=158.97 Aligned_cols=320 Identities=13% Similarity=0.035 Sum_probs=197.3
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHH-HhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
..|++.+|+.+.++.... ....+...++.+++ +++++ ..+++++++||++|+..+++.+.. .++++|
T Consensus 14 ~~~~i~~a~~~~~~~~~~----~~~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~-------~~Gd~V 81 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIY----TNYGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKR-------KKGKYA 81 (377)
T ss_dssp CGGGGHHHHHHHHHHTCC----SSSCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSC-------TTCCEE
T ss_pred CcHHHHHHHHHHHHcCCc----ccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCC-------CCcCEE
Confidence 357789999988876421 11246778999999 99985 267899999999999999987511 356889
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
|+..++|.++.......+ ..+++++.....+. .|++++++++.....++.+|+ |
T Consensus 82 i~~~~~~~~~~~~~~~~G-------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~~~~~~tk~v~--~ 135 (377)
T 3ju7_A 82 LMPSFTFPATPLAAIWCG-------------LEPYFIDISIDDWY-----------MDKTVLWDKIEELKEEVAIVV--P 135 (377)
T ss_dssp EEESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCS-----------BCHHHHHHHHHHHGGGEEEEC--C
T ss_pred EECCCCcHHHHHHHHHcC-------------CEEEEEecCCccCC-----------cCHHHHHHHHhcCCCCceEEE--E
Confidence 999999877633222221 12334443211111 278889988832112266665 4
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCCcceeeec----cccCCCcccceeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLS----KGITGGYLPLSLVM 504 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pDivt~s----K~l~gG~~pig~v~ 504 (965)
.+++|...+ +++|.++|+ ||+++|+|++|+ +|.. +..... +...|+.++| |.+++| ..|+++
T Consensus 136 --~~~~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~ 202 (377)
T 3ju7_A 136 --YATFGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIY 202 (377)
T ss_dssp --BCGGGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEE
T ss_pred --ECCCCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEE
Confidence 355787765 788999999 999999999997 5422 111122 2224666654 888875 456666
Q ss_pred e-cHHHHHhhhc---cCCc---ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCC-Cceee
Q psy8199 505 T-TDKIYNSIYY---KNNI---NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKIIN 576 (965)
Q Consensus 505 ~-~~~i~~~~~~---~~~~---~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~~i~~ 576 (965)
. ++++++.+.. .+.. .....+..+..+++.++.+++.|+.+. ...++.+++.+++.+.|+++... ..+..
T Consensus 203 ~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 280 (377)
T 3ju7_A 203 SKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLLQSNGLMKKGWQL 280 (377)
T ss_dssp ESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTTTTTTCBC
T ss_pred ECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCccccccC
Confidence 5 4566555432 1100 011123455667888888888886553 35777788888888888776321 11111
Q ss_pred eec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------------------------CCEEEEeCCc
Q psy8199 577 FRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------GNTVYLMPPY 627 (965)
Q Consensus 577 v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------~~~lR~~p~~ 627 (965)
..+ .-.++.+.+. + ....+.+.+.|.++||.++.. .+.+|+....
T Consensus 281 ~~~~~~~~~~~~~~~~--~----~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~ 354 (377)
T 3ju7_A 281 QKTEAVIQQFMPILCP--E----EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWE 354 (377)
T ss_dssp CCCSCBCCSSEEEECC--T----TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCT
T ss_pred CCCCcceEEEEEEEeC--C----hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCC
Confidence 111 1112333332 1 111457888999999977521 1468888888
Q ss_pred ccCHHHHHHHHHhhhcccccHH
Q psy8199 628 ILNKNEIQHMTSAIFQTFNELD 649 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~~~~ 649 (965)
.+++++++.+++.+.+...+.+
T Consensus 355 ~~t~~di~~v~~~l~~~~~~~~ 376 (377)
T 3ju7_A 355 GMTKEIVEQIVICLGQKVVSAD 376 (377)
T ss_dssp TCCHHHHHHHHHHHTC------
T ss_pred CCCHHHHHHHHHHHHHHHhccc
Confidence 8899999999998887665543
No 229
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.61 E-value=2.8e-15 Score=167.54 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=188.4
Q ss_pred CCHHHHHHHHHHHhhc-----ccccc---CCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCCh-hHHHHHHHHHHHHHHHh
Q psy8199 271 SNSYINKALKNQLNKL-----EHVML---SNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDG-ASAVEVALKMSFHYWYN 340 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-----~~~~~---~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sG-seA~~~Al~~a~~~~~~ 340 (965)
.+|.|++|+.+.++.. +.+.. .....+...++++.++++++.. .+++++++|+ ++|++.++.....
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~---- 89 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLT---- 89 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcC----
Confidence 6899999999887642 01101 1112234678999999998754 3589999988 9999998876532
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH-HHHhCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI-LLKKNH 419 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~ 419 (965)
.| .+.+.|+....+|+.. ..+. ... .+..+|.....+. .|+++|++ ++ .
T Consensus 90 ~~-~~g~~vi~~~~~~~~~-~~~~-------------~~g-~~~~v~~~~~~~~-----------~d~~~l~~~~i---~ 139 (360)
T 1w23_A 90 KG-TIGNYVLTGSWSEKAL-KEAK-------------LLG-ETHIAASTKANSY-----------QSIPDFSEFQL---N 139 (360)
T ss_dssp TT-CEEEEEECSHHHHHHH-HHHH-------------TTS-EEEEEEECGGGTS-----------CSCCCGGGCCC---C
T ss_pred CC-CcccEEEecchhHHHH-HHHH-------------HhC-CeEEeecccccCc-----------CCccchHhhcc---C
Confidence 11 1123344333222211 1110 011 2333333210000 24455655 44 3
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~ 497 (965)
+++.+|++.. ++|++|.+.+ +++++||+++|+||+|+.+... .....+ |+++ ++|.++.+
T Consensus 140 ~~~k~v~~~~-~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~- 201 (360)
T 1w23_A 140 ENDAYLHITS-NNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS- 201 (360)
T ss_dssp TTEEEEEEES-EETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT-
T ss_pred CCCCEEEEeC-CCCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC-
Confidence 4577777777 7999998764 2344899999999999754321 112211 6765 56988642
Q ss_pred ccceeeeecHHHHHhhhccCCccccc-------ccCCC-CCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHH
Q psy8199 498 LPLSLVMTTDKIYNSIYYKNNINIFL-------HSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKAL 565 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~~~~~~~~-------~~~t~-~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L 565 (965)
++|++++++++++.+.... .... .+.++ +.+..+++++.++|+.+.+. ...++.+++.+++.+.|
T Consensus 202 -G~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L 278 (360)
T 1w23_A 202 -GVTVVIVKKDLLNTKVEQV--PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI 278 (360)
T ss_dssp -TCEEEEEEHHHHCSCCTTC--CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEEcHHHHhhcccCC--cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999887654310 0110 12333 34566777788888876542 35677777888888888
Q ss_pred HcccCCCce-eee--e-ce-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHH
Q psy8199 566 TSLITHPKI-INF--R-QK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 566 ~~l~~~~~i-~~v--~-g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~ 637 (965)
+++ +++ ... + +. +.++.+.+. + ......+.+.|.++||.+.++. +++|++++...++++++++
T Consensus 279 ~~~---~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~ 349 (360)
T 1w23_A 279 DES---NGFYVGHAEKGSRSLMNVTFNLR--N----EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIAL 349 (360)
T ss_dssp HTT---TTSSEESSCGGGBCSSEEEEECS--S----HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHH
T ss_pred HHc---cCcccccCCchhccCcEEEEEcC--C----CccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHH
Confidence 765 322 221 2 13 447777653 2 1124467778899999998753 6899999888899999999
Q ss_pred HHhhhcc
Q psy8199 638 TSAIFQT 644 (965)
Q Consensus 638 ~~~l~~~ 644 (965)
++++.+.
T Consensus 350 ~~~l~~~ 356 (360)
T 1w23_A 350 RELMIQF 356 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
No 230
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.60 E-value=2.1e-14 Score=151.03 Aligned_cols=194 Identities=15% Similarity=0.225 Sum_probs=149.7
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC---CCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcE
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 765 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 765 (965)
|++|+++|.||..+..... ...+.++++++++.+.+..+. +...+.++||+ |+. ..+.+.++++.+++.++.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGE-P~l--~~~~l~~l~~~~~~~~~~ 100 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGE-AIL--QAEFVRDWFRACKKEGIH 100 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCT--TCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESC-GGG--GHHHHHHHHHHHHTTTCC
T ss_pred eCCCCCCCCCCCCchhccc--ccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCC-cCC--CHHHHHHHHHHHHHcCCc
Confidence 7899999999987643221 123457899999999876654 46889998864 533 345678888888877766
Q ss_pred eEE-ecCCC--CHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe--cCCCHH
Q psy8199 766 TCL-TLGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG--LSESRD 839 (965)
Q Consensus 766 i~~-~~~~~--~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G--l~et~e 839 (965)
+.+ ++|.+ +.+.++.|+++ ++.+.+++++ +++.++++++. ++++.+++++.++++|+++...+++- .+++.+
T Consensus 101 i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~ 178 (245)
T 3c8f_A 101 TCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDD 178 (245)
T ss_dssp EEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHH
T ss_pred EEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCEEEEEEeecCCCCCCHH
Confidence 544 44666 78899999998 9999999999 89999999864 46999999999999999887665553 347889
Q ss_pred HHHHHHHHHHhcCCCC-CceeeccccccCCC---------CCCCCCCCCHHHHHHHHHHHHH
Q psy8199 840 QRAELIFQLANLNPYP-ESVPINNLVQIKGT---------PLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 840 d~~~~l~~l~~l~~~~-~~i~~~~~~P~~gT---------~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
++.+.++++.+++ + ..+.+.++.|.+++ ++.+.++++.+++.++...+|.
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
T 3c8f_A 179 SAHRLGEFTRDMG--NVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQ 238 (245)
T ss_dssp HHHHHHHHHHHHC--CEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--CCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHh
Confidence 9999999999998 5 67778888886654 3444567788888888777764
No 231
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.60 E-value=8.7e-15 Score=169.75 Aligned_cols=334 Identities=12% Similarity=0.035 Sum_probs=193.7
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc--cccc-CC-CC----cHHHHHHHHHHHhhcCCCCCe---EEEcCCh
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVML-SN-LT----HKPVIKLSEKLSSLTQYKLGH---CFYGSDG 323 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~-~~-~~----~~~~~~la~~l~~~~~~~~~~---v~~~~sG 323 (965)
..|++.++. ...+|.|.+|+.+.+.+.. .+.. .. .. .+....+.++++++++...+. .+..+||
T Consensus 45 ~~i~L~a~e-----~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 45 VGLELIASE-----NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSG 119 (483)
T ss_dssp SSEECCTTC-----CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCeEEEcCC-----CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCc
Confidence 456665542 2368999999988876521 0110 01 11 223345558888998765442 2455667
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSAN 401 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 401 (965)
++|+.+++.... .++++|++.+..|+|...-.... ...... +... ....++.+ ...+.
T Consensus 120 s~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~~-~~~~v~--~~G~--~~~~v~~~~~~~~~~------- 179 (483)
T 1rv3_A 120 SPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMT-DKKKIS--ATSI--FFESMAYKVNPDTGY------- 179 (483)
T ss_dssp HHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBC-SSCBCS--HHHH--HSEEEEECBCTTTCS-------
T ss_pred HHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhhh-cccCcc--cccc--eEEEEECccccCCCc-------
Confidence 799988887653 36788999998876652111000 000000 0000 02233321 11111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCccccc-ccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKF-FACEH 479 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~ 479 (965)
.|+++|++++.+. ++.+|++ . ..+++ .+.+ +++|+++|++||+++|+||+|. |+-..|.. ..+.
T Consensus 180 ----iD~d~le~~i~~~--~tklIi~-~-~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~- 245 (483)
T 1rv3_A 180 ----IDYDRLEENARLF--HPKLIIA-G-TSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE- 245 (483)
T ss_dssp ----BCHHHHHHHHHHH--CCSEEEE-C-CSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-
T ss_pred ----CCHHHHHHHHhhc--CCcEEEE-e-CCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-
Confidence 3788999998732 3455666 4 35555 5554 8999999999999999999985 22111211 1111
Q ss_pred cCCCcceee--eccccCCCcccceeeeecHHH---------------HHhhhccCCcccccccCCCCCCHHHHHHHHHHH
Q psy8199 480 AEIWPDFLC--LSKGITGGYLPLSLVMTTDKI---------------YNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542 (965)
Q Consensus 480 ~~~~pDivt--~sK~l~gG~~pig~v~~~~~i---------------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L 542 (965)
..|+++ ++|+++| ++.|++++++++ .+.+... ...+..-+.+...+++..+++
T Consensus 246 ---~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~-----~~~~~~g~~~~~~iaal~~Al 315 (483)
T 1rv3_A 246 ---HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA-----VFPGLQGGPHNHAIAGVAVAL 315 (483)
T ss_dssp ---TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH-----HTTTTCCSCCHHHHHHHHHHH
T ss_pred ---CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhh-----cCCcccCCccHHHHHHHHHHH
Confidence 358775 4699966 577999988752 2222210 011111123444556656677
Q ss_pred HHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec-e-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe--
Q psy8199 543 EIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQ-K-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-- 615 (965)
Q Consensus 543 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-- 615 (965)
+.+.+ +...+++.++.+++.+.|.++ ++..+.+ . ..++.+++. ..+ .....+.+.|.+.||.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~-~~g----~~~~~~~~~L~~~gI~v~~~ 386 (483)
T 1rv3_A 316 KQAMTPEFKEYQRQVVANCRALSAALVEL----GYKIVTGGSDNHLILVDLR-SKG----TDGGRAEKVLEACSIACNKN 386 (483)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEEGG-GGT----CCHHHHHHHHHHTTEECEEE
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHhc----CCEeccCCCCCceEEEecc-CCC----CCHHHHHHHHHhCCcEEecC
Confidence 76543 346777888888888888765 3333322 1 234455543 111 013356677888999988
Q ss_pred --ec------CCEEEEeCCcccC----HHHHHHHHHhhhcccc
Q psy8199 616 --PI------GNTVYLMPPYILN----KNEIQHMTSAIFQTFN 646 (965)
Q Consensus 616 --~~------~~~lR~~p~~~~t----~~~i~~~~~~l~~~~~ 646 (965)
|+ .+.+||+.+...+ +++++++++.+.+.+.
T Consensus 387 ~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 387 TCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp CCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 53 2589999886656 9999999999876543
No 232
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.59 E-value=2.5e-13 Score=158.44 Aligned_cols=313 Identities=11% Similarity=0.048 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHH----HhcCCC--CceEEEEEcCCccCCccccccccCC
Q psy8199 298 PVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYW----YNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~----~~~g~~--~~~~vi~~~~~yHg~~~~~~~~~~~ 369 (965)
...+++++++++++.. .+.++|++|||+||..|+.+++... ...|.. ++..|++.+.+ |.+...+....|.
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~-H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc-hHHHHHHHHHcCC
Confidence 3455666778887654 4589999999999999999988742 222321 23455555544 4433332222221
Q ss_pred cCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHH
Q psy8199 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 446 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~ 446 (965)
. ...+..+|.... +. .|+++|+++|++. +..+.+|++.. +++++|.+.+ ++
T Consensus 215 g---------~~~~~~v~~d~~-~~-----------~d~~~Le~~i~~~~~~g~~~~~vv~~~-~~~~~G~vd~----l~ 268 (511)
T 3vp6_A 215 G---------TDNVILIKCNER-GK-----------IIPADFEAKILEAKQKGYVPFYVNATA-GTTVYGAFDP----IQ 268 (511)
T ss_dssp C---------GGGEEEECBCTT-SC-----------BCHHHHHHHHHHHHHTTCEEEEEEEEB-SCSSSCCBCC----HH
T ss_pred C---------CCcEEEeecCCC-Cc-----------cCHHHHHHHHHHHHhcCCCcEEEEEec-CCCCCccccc----HH
Confidence 0 013445554322 11 3788999998653 22366777776 6889999877 99
Q ss_pred HHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecH-HHHHhhhccCCcccc
Q psy8199 447 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIF 522 (965)
Q Consensus 447 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~ 522 (965)
+|.++|++||+++++|++|.|.......+.....|+ ..|.+++ .|.+++. ...|+++.++ +++...... ...+
T Consensus 269 ~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~--~~~y 345 (511)
T 3vp6_A 269 EIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM--HASY 345 (511)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC--CCTT
T ss_pred HHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhcc--CCcc
Confidence 999999999999999999975322111111222233 4688765 5877664 4667777754 344432210 0001
Q ss_pred cc-----------------cCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee---ceeE
Q psy8199 523 LH-----------------SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR---QKGM 582 (965)
Q Consensus 523 ~~-----------------~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~---g~G~ 582 (965)
.. ..+-....+++.+++..+..-.-++..++..++.+++.+.|++. |++..+. +...
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~---pg~~l~~~~~p~~~ 422 (511)
T 3vp6_A 346 LFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR---EEFEMVFNGEPEHT 422 (511)
T ss_dssp TCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---TTEEESSSSCCSSS
T ss_pred ccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEEecCCCCeE
Confidence 10 00111234444444444422112346777778888888888764 5555332 4455
Q ss_pred EEEEEEeecCcc-----c------hhhHHHHHHHHHHHcCcEEee----cC--CEEEEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 583 IWAFDVIIEDPE-----Q------IETFSKKFFVAALKNELLLRP----IG--NTVYLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 583 ~~~i~~~~~~~~-----~------~~~~~~~~~~~l~~~Gi~~~~----~~--~~lR~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
++.+.+. .... . .......+.+.|.++|+++.. .+ +++|+++ +...+.++++.+++.+.+.
T Consensus 423 ~v~f~~~-p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 423 NVCFWYI-PQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp CEEEEEC-CGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEe-CccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5555543 1100 0 011233688889999965432 12 3699998 6788999999999887654
No 233
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.58 E-value=8.5e-15 Score=163.80 Aligned_cols=322 Identities=9% Similarity=0.037 Sum_probs=194.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc------ccCCC--CcHHHHHHHHHHHhhcCCCCC-eE-EEcC
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV------MLSNL--THKPVIKLSEKLSSLTQYKLG-HC-FYGS 321 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~------~~~~~--~~~~~~~la~~l~~~~~~~~~-~v-~~~~ 321 (965)
.++.|+|..+.. -.+|+|++|+.+.+.+.... ....+ ..+...+++++++++++...+ ++ ++++
T Consensus 2 ~~~~~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~ 75 (362)
T 2c0r_A 2 SERAYNFNAGPA------ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQG 75 (362)
T ss_dssp CCCCEECCSSSC------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESS
T ss_pred CcceeeccCCCC------CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECC
Confidence 355677765432 26899999999887542100 00111 223467888999999876443 64 6789
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC--CCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNS 399 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 399 (965)
||++|+..+++.... ++++|++.+.++++..... ...... .+..++.+. .....
T Consensus 76 g~t~a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~-----------~~~~~g-~~~~v~~~~~~~~~~~---- 131 (362)
T 2c0r_A 76 GASTQFAMIPMNFLK--------EGQTANYVMTGSWASKALK-----------EAKLIG-DTHVAASSEASNYMTL---- 131 (362)
T ss_dssp HHHHHHHHHHHHHCC--------TTCEEEEEECSHHHHHHHH-----------HHHHHS-CEEEEEECGGGTTCSC----
T ss_pred CchHHHHHHHHhcCC--------CCCeEEEEecCcHhHHHHH-----------HHHHhC-CeEEEecccccccccC----
Confidence 999999999986632 4577887776654431100 001112 333444321 01100
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
.|+++++ + .+++.+|++.+ ++|++|.+..+ +++| ||+++|+||+|. +|.. .....
T Consensus 132 ------~~~~~~~--i---~~~t~~v~~~~-~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~- 186 (362)
T 2c0r_A 132 ------PKLQEIQ--L---QDNAAYLHLTS-NETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN- 186 (362)
T ss_dssp ------CCGGGCC--C---CTTEEEEEEES-EETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG-
T ss_pred ------CCHHHcc--c---CCCcCEEEEeC-CcCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh-
Confidence 0122222 2 34567777766 68999986322 3343 899999999996 4321 11111
Q ss_pred cCCCccee--eeccccCCCcccceeeeecHHHHHhhhccCCccccc-------c-cCCCCCCHHHHHHHHHHHHHHhc--
Q psy8199 480 AEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-------H-SHSYSGNPLACCAALATLEIFNK-- 547 (965)
Q Consensus 480 ~~~~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~-------~-~~t~~~~~~~~aaa~a~L~~~~~-- 547 (965)
.. |++ +++|.++. ..+|++++++++++.+... ...+. . ...++.++.+++++.++|+.+.+
T Consensus 187 -~~--d~~~~s~~K~~g~--~G~G~l~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~ 259 (362)
T 2c0r_A 187 -QF--GLVYAGAQKNLGP--SGVTVVIVREDLVAESPKH--LPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERG 259 (362)
T ss_dssp -GC--SEEEEETTTTTCC--SSCEEEEEEGGGSSSCCTT--SCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred -HC--cEEEEeccccccC--cCcEEEEEcHHHHhhcccc--CchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhC
Confidence 12 766 46898853 2379999999887665431 00000 0 22345678889999999987654
Q ss_pred --ccHHHHHHHHHHHHHHHHHcccCCCce-eee----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---
Q psy8199 548 --DNILQRISQDMKKITKALTSLITHPKI-INF----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 617 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~l~~~~~i-~~v----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 617 (965)
+...++.+++.+++.+.|+++ +.+ ... ...+.++.+.+. + ......+.+.|.++||.+.++
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~gi~~~~g~~~ 330 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQS---GGFYRGCVDVDSRSDMNITFRLA--S----EELEKEFVKASEQEGFVGLKGHRS 330 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS---TTSSEESSCGGGBCSSEEEEECS--C----HHHHHHHHHHHHHTTEESCBCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc---CCccccCCChHHcCCcEEEEEcC--C----cchHHHHHHHHHHCCCeeccCCCC
Confidence 346677778888888888765 212 211 112334555442 1 112456778899999988764
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+.+|++.....++++++++++.+.+.
T Consensus 331 ~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 331 VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 257999988778999999999988654
No 234
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.58 E-value=3.9e-14 Score=162.44 Aligned_cols=316 Identities=12% Similarity=0.067 Sum_probs=177.0
Q ss_pred CCHHHHHHHHHHHhh-cccc-ccCC--C---CcHHHH-HHHHHHHhhcCCCCC---eEEEcCChhHHHHHHHHHHHHHHH
Q psy8199 271 SNSYINKALKNQLNK-LEHV-MLSN--L---THKPVI-KLSEKLSSLTQYKLG---HCFYGSDGASAVEVALKMSFHYWY 339 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~~~-~~~~--~---~~~~~~-~la~~l~~~~~~~~~---~v~~~~sGseA~~~Al~~a~~~~~ 339 (965)
.+|+|++|+...+.+ .... .... . .....+ ...++++++++...+ ..++++||++||..++....
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~---- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----
Confidence 489999999887754 2111 1001 1 112222 334788999975543 24567799999999998764
Q ss_pred hcCCCCceEEEEEcCCccCCcc-c------cccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChhHHHHHHHHH
Q psy8199 340 NKGFLNKKKFICLQNSYHGETL-G------ALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 340 ~~g~~~~~~vi~~~~~yHg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~ 410 (965)
.++++|++.+..|.|... + ....++. ....++++ ...+. .|+++
T Consensus 142 ----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~------------~~~~~~~~vd~~~~~-----------iD~d~ 194 (490)
T 2a7v_A 142 ----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI------------FFESMPYKLNPKTGL-----------IDYNQ 194 (490)
T ss_dssp ----CSCEECCC-------------------------------------------CCBCTTTCS-----------BCHHH
T ss_pred ----CCCCEecccCccccccccchhhhcchhHHHcCC------------eEEEEecccccccCC-----------cCHHH
Confidence 367889888877644211 0 1111110 01111211 00111 37899
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCccccc-ccccccCCCccee-
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKF-FACEHAEIWPDFL- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~~~~~pDiv- 487 (965)
|++++.+.. ..+|++.. .. .|...+ +++|+++|++||++||+|++|. |+...|.. ..++ ..|++
T Consensus 195 le~~l~~~~--~klIi~~~-s~--~~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~ 261 (490)
T 2a7v_A 195 LALTARLFR--PRLIIAGT-SA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVT 261 (490)
T ss_dssp HHHHHHHHC--CSEEEECC-SS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEE
T ss_pred HHHHHhhcC--CcEEEEcC-CC--CCCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEE
Confidence 999886432 23555543 12 233344 8999999999999999999975 22112211 1111 25777
Q ss_pred -eeccccCCCcccceeeeecHH---------------HHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhc---
Q psy8199 488 -CLSKGITGGYLPLSLVMTTDK---------------IYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK--- 547 (965)
Q Consensus 488 -t~sK~l~gG~~pig~v~~~~~---------------i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~L~~~~~--- 547 (965)
+++|+++| .+.|+++++++ +.+.+.. ....++.++ ++..+++..+++..+..
T Consensus 262 ~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~~~g~qggp~~~~iaAla~Al~~~~~~~~ 333 (490)
T 2a7v_A 262 TTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMF 333 (490)
T ss_dssp EESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHH
T ss_pred ECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHH------HhcccCCCCchHHHHHHHHHHHHHHhhhhH
Confidence 46899966 46688888764 3333332 122233333 44445555556665532
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c----
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I---- 617 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~---- 617 (965)
++..+++.++.++|.+.|.+. ++..+.+ ...++.+++. ..+ .....+.+.|.+.||.+.. +
T Consensus 334 ~~~~~~~~~na~~L~~~L~~~----G~~v~~~~t~t~lv~vdl~-~~g----~~~~~~~~~L~~~GI~v~~~~~p~d~~p 404 (490)
T 2a7v_A 334 REYSLQVLKNARAMADALLER----GYSLVSGGTDNHLVLVDLR-PKG----LDGARAERVLELVSITANKNTCPGDRSA 404 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECT-TTT----CCHHHHHHHHHHTTEECEEECCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHc----CcEEecCCCCCeEEEEEeC-CCC----CCHHHHHHHHHhCCeEEecCccCCCCCC
Confidence 346788889999999999874 3433322 2345556553 111 1134567788899999863 2
Q ss_pred --CCEEEEeCCc----ccCHHHHHHHHHhhhccccc
Q psy8199 618 --GNTVYLMPPY----ILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 --~~~lR~~p~~----~~t~~~i~~~~~~l~~~~~~ 647 (965)
...+|+..|. .+++++++++.+.+.+++..
T Consensus 405 ~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 405 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 2579995543 47899999999888776543
No 235
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.56 E-value=2.4e-14 Score=161.59 Aligned_cols=270 Identities=7% Similarity=0.016 Sum_probs=162.6
Q ss_pred cHHHHHHHHHHHhhcC--CCC-CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce----EEEEEcCCccCCccccccccC
Q psy8199 296 HKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK----KFICLQNSYHGETLGALAVTN 368 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~--~~~-~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~----~vi~~~~~yHg~~~~~~~~~~ 368 (965)
.+.+..+++.+.. .+ ... ++|++|+|+++|+..+++.... +++ .|++.+++|.++.......+.
T Consensus 71 ~~lr~aia~~~~~-~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--------~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 141 (391)
T 3bwn_A 71 PELEDAIKDLHGV-VGNAATEDRYIVVGTGSTQLCQAAVHALSS--------LARSQPVSVVAAAPFYSTYVEETTYVRS 141 (391)
T ss_dssp HHHHHHHHHHHHH-HCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--------TSSSSSEEEEECSSCCTHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHh-cCCCCCCCCeEEEeCChHHHHHHHHHHhcC--------CCCCCcceEEEcCCCchhHHHHHHHcCC
Confidence 4444555554442 11 123 5899999999999999987754 345 899999999887433322221
Q ss_pred CcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHH
Q psy8199 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 448 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l 448 (965)
.+..++.. .+.++ ..++.+|++.. ++|++|.+.. +
T Consensus 142 -------------~~~~~~~d------------------~~~l~------~~~~k~v~l~~-p~NPtG~~~~------~- 176 (391)
T 3bwn_A 142 -------------GMYKWEGD------------------AWGFD------KKGPYIELVTS-PNNPDGTIRE------T- 176 (391)
T ss_dssp -------------TTEEEEEE------------------STTCC------CCSCEEEEEES-SCTTTCCCCC------C-
T ss_pred -------------eEEEecCC------------------HHHcC------CCCCEEEEECC-CCCCCchhHH------H-
Confidence 11122211 01111 12344454443 4899998873 2
Q ss_pred HHHHHh-cC--CeEEEeccccCCCccccccccc-ccCCCcceeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccc
Q psy8199 449 REICNN-YN--IHLIADEIAVGCGRTGKFFACE-HAEIWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIF 522 (965)
Q Consensus 449 ~~l~~~-~g--~llI~DEv~tg~gr~G~~~~~~-~~~~~pDivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~ 522 (965)
+|++ |+ +++|+||+|. ++ ...... ..+...-+-+|||.++ .| +++|++++ ++++++.+.. .
T Consensus 177 --l~~~~~~~~~~ii~De~y~-~~---~~~~l~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~------~ 243 (391)
T 3bwn_A 177 --VVNRPDDDEAKVIHDFAYY-WP---HYTPITRRQDHDIMLFTFSKITGHAG-SRIGWALVKDKEVAKKMVE------Y 243 (391)
T ss_dssp --CC-----CCCEEEEECTTC-ST---TTSCCCCCBCCSEEEEEHHHHHSCGG-GCEEEEEECCHHHHHHHHH------H
T ss_pred --HHHHhhcCCCEEEEeCCCC-CC---CCCccccCCCCeEEEEechhhcCCCc-cceEEEEecCHHHHHHHHH------H
Confidence 3444 66 9999999996 22 111111 1121112237899876 34 89999997 8888887765 2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHh---------c---ccHHHHHHHHHHHHHHHHHcccCCCceeee-------------
Q psy8199 523 LHSHSYSGNPLACCAALATLEIFN---------K---DNILQRISQDMKKITKALTSLITHPKIINF------------- 577 (965)
Q Consensus 523 ~~~~t~~~~~~~~aaa~a~L~~~~---------~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------- 577 (965)
....+++.+++++.++.++|+... + +...+.++++.+++.+.|+++ +++...
T Consensus 244 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~p~~~~~~f~~~~ 320 (391)
T 3bwn_A 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES---DAFTLPKYPEAFCNYFGKS 320 (391)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC---SSEECCCCCCEEETTTTEE
T ss_pred hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccccCCcccccccccc
Confidence 222346678999999999997532 1 224555666667777777654 333221
Q ss_pred -eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 578 -RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 578 -~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+..|+++.+.+. + . ..+.+.+.++||.+.|+ .+++||+.. .++++++++++++.+.+.
T Consensus 321 ~~~~g~~~~~~~~--~----~---~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 321 LESYPAFAWLGTK--E----E---TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp ECCCCSEEEEEES--S----S---CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred CCCcceEEEecCC--c----H---HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 223445666663 1 1 13446677899999984 368999954 588999999999987654
No 236
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.7e-13 Score=156.06 Aligned_cols=307 Identities=12% Similarity=0.019 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhcCCCC----------CeEEEcCChhHHHHHHHHHHHHHHHhc----CC-------CCceEEEEEcCC
Q psy8199 297 KPVIKLSEKLSSLTQYKL----------GHCFYGSDGASAVEVALKMSFHYWYNK----GF-------LNKKKFICLQNS 355 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~----------~~v~~~~sGseA~~~Al~~a~~~~~~~----g~-------~~~~~vi~~~~~ 355 (965)
+...+++++++++++.+. ...+|++|||+||..|+.++|.....+ +. .++..|++.+ .
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-~ 196 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD-Q 196 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET-T
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC-c
Confidence 344556666777775332 267899999999999999998753211 10 1234455544 4
Q ss_pred ccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccc
Q psy8199 356 YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQ 432 (965)
Q Consensus 356 yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~ 432 (965)
.|.+...+....+ ..++.+|.... +. .|+++|+++|++. +....+|++.- ..
T Consensus 197 ~H~s~~~~~~~~g------------~~~~~v~~~~~-~~-----------~d~~~Le~~i~~~~~~g~~~~~vv~~~-~~ 251 (481)
T 4e1o_A 197 AHSSVEKAGLISL------------VKMKFLPVDDN-FS-----------LRGEALQKAIEEDKQRGLVPVFVCATL-GT 251 (481)
T ss_dssp SCHHHHHHHHHHT------------CEEEEECCCTT-SC-----------CCHHHHHHHHHHHHHTTCEEEEEEEEB-SC
T ss_pred chHHHHHHHHhCC------------CceEEEEcCCC-Cc-----------CCHHHHHHHHHHHHhCCCCcEEEEEec-CC
Confidence 4444332222222 23445554322 11 3789999998653 12244455554 57
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH-
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK- 508 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~- 508 (965)
+++|.+.| +++|.++|++||+++++|++|.|+...+..+.....|+ ..|.+++ .|.+++. ...|+++.+++
T Consensus 252 t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~ 326 (481)
T 4e1o_A 252 TGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKY 326 (481)
T ss_dssp TTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHH
T ss_pred CCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHH
Confidence 78898877 99999999999999999999976422222222222344 3588876 5877664 46677776543
Q ss_pred HH-HhhhccCCccccc---------------ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 509 IY-NSIYYKNNINIFL---------------HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 509 i~-~~~~~~~~~~~~~---------------~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
.. +.+... ..+. ...+.....+.+.+++..+..-.-++..++..++.+++.+.|+++ |
T Consensus 327 ~l~~~~~~~---~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~ 400 (481)
T 4e1o_A 327 KLQQTFSVN---PIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND---P 400 (481)
T ss_dssp HHHTTTCCC---CGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHHhcCC---chhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 32 222110 0011 011111234555555554432112345677778888888888765 4
Q ss_pred ceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE-Eee---cC-CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 573 KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL-LRP---IG-NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 573 ~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~-~~~---~~-~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
++..+ .....++.+.+. .. ......+.+.|.++|++ +.| .+ ..+|++.. ...++++++++++++.+..
T Consensus 401 g~~~~~~~~~~~v~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 401 SFEIPAKRHLGLVVFRLK-GP----NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAA 475 (481)
T ss_dssp TEECCSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEecCCceeEEEEEeC-Cc----hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55433 234456666653 11 22345788888888843 333 22 47999955 3458999999999887644
No 237
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.55 E-value=8e-14 Score=158.01 Aligned_cols=310 Identities=10% Similarity=0.064 Sum_probs=185.0
Q ss_pred CCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEE-cCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 271 SNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFY-GSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~-~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
.+|+|++|+.++.... ...+......+...++.+++++.++.. .++++| ++||++|++.+++.+.. ++
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~--------~g- 121 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--------KR- 121 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS--------SC-
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC--------CC-
Confidence 5789999887631111 101111011234678999999999765 358998 99999999999987631 22
Q ss_pred EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 348 ~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
++....++|+.......... +....+..++.+... .. +. + + ..++.+|++
T Consensus 122 -v~~v~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~g~-~~-----------~~-~----i---~~~~~~v~~ 171 (398)
T 2fyf_A 122 -SLHLTYGEFSAKFASAVSKN---------PFVGEPIIITSDPGS-AP-----------EP-Q----T---DPSVDVIAW 171 (398)
T ss_dssp -EEEEECSHHHHHHHHHHHHC---------TTSCCCEEEECCTTC-CC-----------CC-C----C---CTTCSEEEE
T ss_pred -eEEEeCCHHHHHHHHHHHHh---------CCCCceEEEecCCCC-CC-----------Cc-c----c---cCCCCEEEE
Confidence 23335566653211111000 001123444443111 00 00 0 2 234556666
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMT 505 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~ 505 (965)
.. ++|++|.+.+ +++|.++ +|+++|+||+|+.+... .... .+|++++ +|.+++++ .+|++++
T Consensus 172 ~~-~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~g-g~g~l~~ 235 (398)
T 2fyf_A 172 AH-NETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDG-GLWLAIM 235 (398)
T ss_dssp ES-EETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCS-SEEEEEE
T ss_pred eC-cCCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCC-ceEEEEE
Confidence 65 6999999887 3334333 89999999999754321 1111 2688764 59887753 5899999
Q ss_pred cHHHHHhhhcc---CC-ccccc----------ccCCC-CCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHH
Q psy8199 506 TDKIYNSIYYK---NN-INIFL----------HSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALT 566 (965)
Q Consensus 506 ~~~i~~~~~~~---~~-~~~~~----------~~~t~-~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~ 566 (965)
++++++.+..- +. ..++. .+.++ +.+..+++++.++|+.+.+. ...++.+++.+++.+.|+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~ 315 (398)
T 2fyf_A 236 SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQ 315 (398)
T ss_dssp CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99988765310 00 00000 12233 45667777888888876543 356677778888888887
Q ss_pred cccCCCceeee---e-ceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHH
Q psy8199 567 SLITHPKIINF---R-QKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 567 ~l~~~~~i~~v---~-g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~ 636 (965)
++ +++... + +.+. ++.+.+. ++ .....+.+.|.++||.++++ ++++|+++....+++++++
T Consensus 316 ~~---~g~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~ 386 (398)
T 2fyf_A 316 ER---PYTTPFVTDPGLRSQVVGTIDFV--DD----VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSA 386 (398)
T ss_dssp HS---TTEEESCCSGGGBCSSEEEEEEC--TT----SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHH
T ss_pred Hc---CCceeccCChhhcCCcEEEEECC--CC----CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHH
Confidence 64 344433 1 2344 7777763 11 11346788899999999763 3689999888889999999
Q ss_pred HHHhhhcc
Q psy8199 637 MTSAIFQT 644 (965)
Q Consensus 637 ~~~~l~~~ 644 (965)
+++++.+.
T Consensus 387 ~~~~l~~~ 394 (398)
T 2fyf_A 387 LTECVDWV 394 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 238
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.53 E-value=6.5e-13 Score=154.65 Aligned_cols=332 Identities=11% Similarity=0.009 Sum_probs=185.2
Q ss_pred HHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCCCC---------CeEEEcCChhHHHHHHHHHHHHHHHh----
Q psy8199 275 INKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYN---- 340 (965)
Q Consensus 275 v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Al~~a~~~~~~---- 340 (965)
+.+++...++... ++..+....+...+++++++++++... ..++|++|||+||..|+..++.....
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5566666554321 111111123334466677788876442 35899999999999999988753211
Q ss_pred c-CC------CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 341 K-GF------LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 341 ~-g~------~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
. |. .++..|++.+.+|+... .+....| .+++.+|... .+. .|+++|++
T Consensus 170 ~~gd~~~~~~~~~~~v~~s~~~h~s~~-~~~~~~G------------~~v~~v~~d~-~~~-----------~d~~~L~~ 224 (486)
T 1js3_A 170 ASPGLTQGAVLEKLVAYASDQAHSSVE-RAGLIGG------------VKLKAIPSDG-KFA-----------MRASALQE 224 (486)
T ss_dssp HSTTCCHHHHHHHEEEEEETTCCHHHH-HHHHHHT------------CEEEEECCCT-TSC-----------CCHHHHHH
T ss_pred cCccchhcccCCCEEEEECCCCcHHHH-HHHHhCC------------CceEEeecCC-CCC-----------CCHHHHHH
Confidence 0 10 01123556666654432 1111111 2345555432 111 37899999
Q ss_pred HHHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee
Q psy8199 414 LLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL 489 (965)
Q Consensus 414 ~l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~ 489 (965)
+|++.. ....+|++.. .++++|.+.+ +++|.++|++||+++|+|++|.++......+.....++ ..|.+++
T Consensus 225 ~i~~~~~~g~~p~~vv~~~-~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~ 299 (486)
T 1js3_A 225 ALERDKAAGLIPFFVVATL-GTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNF 299 (486)
T ss_dssp HHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEE
T ss_pred HHHHHHhCCCCceEEEEeC-CCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEE
Confidence 986531 1123444433 4788998877 99999999999999999999976422211111111232 3577765
Q ss_pred --ccccCCCcccceeeeecHH--HHHhhhccC------Cc-----ccccc---cCCCCCCHHHHHHHHHHHHHHhcccHH
Q psy8199 490 --SKGITGGYLPLSLVMTTDK--IYNSIYYKN------NI-----NIFLH---SHSYSGNPLACCAALATLEIFNKDNIL 551 (965)
Q Consensus 490 --sK~l~gG~~pig~v~~~~~--i~~~~~~~~------~~-----~~~~~---~~t~~~~~~~~aaa~a~L~~~~~~~~~ 551 (965)
+|.++.. +.+|+++++++ +.+.+.... .. ..+.. ..+.....+++.+++..+..-.-++..
T Consensus 300 ~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~ 378 (486)
T 1js3_A 300 NPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYI 378 (486)
T ss_dssp CHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHH
Confidence 6877665 68898888654 234442100 00 00000 011122345555555444211113356
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe-ec----CCEEEEeC
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-PI----GNTVYLMP 625 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~----~~~lR~~p 625 (965)
++..++.+++.+.|+++ |++..+ .+.+.++.+.+. .. ......+.+.|.++|++.. +. .+.+|++.
T Consensus 379 ~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~ 450 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQD---PRFEVCAEVTLGLVCFRLK-GS----DGLNEALLERINSARKIHLVPCRLRGQFVLRFAI 450 (486)
T ss_dssp HHHHHHHHHHHHHHHHC---TTEEECSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcC---CCeEEeCCCceeEEEEEec-Ch----HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEe
Confidence 66777788888888664 455433 245666666653 11 1234567888888886543 21 25899994
Q ss_pred -CcccCHHHHHHHHHhhhccc
Q psy8199 626 -PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 -~~~~t~~~i~~~~~~l~~~~ 645 (965)
....++++++++++++.+..
T Consensus 451 ~~~~~t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 451 CSRKVESGHVRLAWEHIRGLA 471 (486)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 44468999999999887543
No 239
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.52 E-value=2.6e-13 Score=152.72 Aligned_cols=294 Identities=9% Similarity=0.016 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHhh---ccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 271 SNSYINKALKNQLNK---LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
|+++|++|+.++.-. ........+......+|.++++++++ .+..++ ++||++|+..++.... .
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all--------~ 99 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFK--TEAALVRPQIISGTHAISTVLFGIL--------R 99 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTSCSHHHHHHHHHHHHC--------C
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhC--CCcEEEECCCccHHHHHHHHHHHhc--------C
Confidence 357788888775421 11122234556678889999999995 455666 8999999999988663 2
Q ss_pred CceEEEEEc-CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEE
Q psy8199 345 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423 (965)
Q Consensus 345 ~~~~vi~~~-~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 423 (965)
++++|++.+ +.|++... .....+. ...........+.+++.... +. .|+++|+++++ +++.
T Consensus 100 ~GD~Vl~~~~~~y~~~~~-~~~~~g~--~~~~l~~~G~~~~~v~~~~~-g~-----------~d~e~l~~ai~---~~tk 161 (409)
T 3jzl_A 100 PDDELLYITGQPYDTLEE-IVGIRKQ--GQGSLKDFHIGYSSVPLLEN-GD-----------VDFPRIAKKMT---PKTK 161 (409)
T ss_dssp TTCEEEECSSSCCTTHHH-HHTSSSS--SSSCTGGGTCEEEECCCCTT-SC-----------CCHHHHHHHCC---TTEE
T ss_pred CCCEEEEeCCCCcHhHHH-HHhcccc--hhhHHHHcCCEEEEeCCCCC-CC-----------cCHHHHHHhcc---CCCe
Confidence 568888888 67766521 1111110 00011111223344443221 11 37888888875 3577
Q ss_pred EEEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC
Q psy8199 424 AIIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 496 (965)
Q Consensus 424 aii~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG 496 (965)
+|++++. ++|++|.+.+ +++|.++|++ ||+++|+||+|..+. .+ .+......|++ +++|.++|+
T Consensus 162 lV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~-~~----~~p~~~g~Div~~S~sK~lgg~ 232 (409)
T 3jzl_A 162 MIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFV-EY----QEPPEVGADIIAGSLIKNPGGG 232 (409)
T ss_dssp EEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTT-SS----CCSGGGTCSEEEEETTSGGGTT
T ss_pred EEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCccccc-cc----CCccccCCeEEEECccccCCcc
Confidence 7777741 2677887765 9999999999 999999999986431 11 11112345777 578999876
Q ss_pred ccc-ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--CCc
Q psy8199 497 YLP-LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPK 573 (965)
Q Consensus 497 ~~p-ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~~ 573 (965)
..+ .|++++++++++.+...... +. .+.+.+..+..+.+++..|+.+ +...++..++..++.+.|+++.. +|.
T Consensus 233 ~~~~GG~v~~~~~li~~l~~~~~~-~~-~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~ 308 (409)
T 3jzl_A 233 LAKTGGYIAGKEALVDLCGYRLTT-PG-IGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV 308 (409)
T ss_dssp TCSSCEEEEECHHHHHHHHHHHSC-TT-TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred CCceEEEEEeCHHHHHHHHHHhcc-cc-ccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 434 47888999998887641000 00 1122222222234455555443 33567778888889998887611 111
Q ss_pred eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 574 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 574 i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
..-++..+++.+.+. + ...+.++++.|.....
T Consensus 309 -~~~~~~~~i~~i~l~--~----~~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 309 -WDAPRTDLIQSVSFH--N----KEKMVAFAQAIQAASP 340 (409)
T ss_dssp -TTSCCSSSCCEEECS--C----HHHHHHHHHHHHHTSS
T ss_pred -CCCCCccEEEEEEeC--C----HHHHHHHHHHHHhcCc
Confidence 111222337777764 2 2334567788877753
No 240
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.51 E-value=7.5e-13 Score=153.01 Aligned_cols=308 Identities=11% Similarity=0.010 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhhcCCCC---------CeEEEcCChhHHHHHHHHHHHHHHHhc----CC-------CCceEEEEEcCCcc
Q psy8199 298 PVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNK----GF-------LNKKKFICLQNSYH 357 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Al~~a~~~~~~~----g~-------~~~~~vi~~~~~yH 357 (965)
...++.++++++++.+. ...+|++|||+||..|+.++|.....+ |. .++..|++.+ ..|
T Consensus 114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~-~~H 192 (475)
T 3k40_A 114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSD-QAH 192 (475)
T ss_dssp HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEET-TSC
T ss_pred HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECC-Cch
Confidence 34455566778775432 268999999999999999998754211 10 1233455544 444
Q ss_pred CCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccC
Q psy8199 358 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCA 434 (965)
Q Consensus 358 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~ 434 (965)
-+...+....| ..+..+|.... + .|+++|+++|++. +....+|++.- ..++
T Consensus 193 ~s~~~~~~~~g------------~~~~~v~~d~~-~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~t~ 246 (475)
T 3k40_A 193 SSVERAGLLGG------------VKLRSVQSENH-R------------MRGAALEKAIEQDVAEGLIPFYAVVTL-GTTN 246 (475)
T ss_dssp HHHHHHHHHHT------------CEEEEECCBTT-B------------CCHHHHHHHHHHHHHTTCEEEEEEEEB-SCTT
T ss_pred HHHHHHHHHcC------------CceEEEECCCC-C------------cCHHHHHHHHHHHHHCCCccEEEEEEe-cCCC
Confidence 44333222222 13445554221 1 2788999998753 12234444443 4777
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH-HH
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK-IY 510 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~-i~ 510 (965)
+|.+.| +++|.++|++||+++|+|++|.+....+..+.....++ ..|.+++ .|.+++. ...|+++.+++ ..
T Consensus 247 ~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l 321 (475)
T 3k40_A 247 SCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWV 321 (475)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC
T ss_pred CcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHH
Confidence 898877 99999999999999999999975322222121112243 4688876 5877664 46777777643 22
Q ss_pred -HhhhccC-----Cc-c---cccccCCCCC---CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee
Q psy8199 511 -NSIYYKN-----NI-N---IFLHSHSYSG---NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF 577 (965)
Q Consensus 511 -~~~~~~~-----~~-~---~~~~~~t~~~---~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v 577 (965)
+.+.... .. . .....+...+ ..+.+.+++..+..-.-++..++..++.+++.+.|+++ |++..+
T Consensus 322 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~l~ 398 (475)
T 3k40_A 322 VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD---SRFELA 398 (475)
T ss_dssp ---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTEEES
T ss_pred HHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEe
Confidence 2221100 00 0 0000000111 23334444443322112346677778888888888765 455432
Q ss_pred -eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEE-ee---cC-CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 578 -RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL-RP---IG-NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 578 -~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-~~---~~-~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
.....++.+.+. .+ .....++.+.|.++|.+. .| .+ ..+|++.. ...++++++++++++.+..
T Consensus 399 ~~~~~~iv~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 468 (475)
T 3k40_A 399 AEINMGLVCFRLK-GS----NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAA 468 (475)
T ss_dssp SCCBTTEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEeC-Cc----hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 234455666653 11 223457888888888644 32 22 58999954 3458999999999887654
No 241
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=1.7e-13 Score=149.20 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=129.9
Q ss_pred EeEeecc-CCCCCCCCCCCCCCcCCCC-----cccccCCCHHHHHHHHHHHHH---------------------CCCCEE
Q psy8199 683 VLLSIKT-GGCTEDCGYCPQSTHYNTE-----ITATKILSIESVITAAQKAKS---------------------DGATRF 735 (965)
Q Consensus 683 ~~i~~~s-~~C~~~C~fC~~~~~~~~~-----~~~~~~~~~eei~~~~~~~~~---------------------~g~~~i 735 (965)
..+++ | .+|+++|.||..+...... ....+.++++++++++.+..+ ...+.+
T Consensus 53 l~i~~-t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 53 IQCTP-SVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEES-CSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred EEecc-ChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 45566 7 7999999999855311110 112456899999987765422 124678
Q ss_pred EEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCC--CCHHH
Q psy8199 736 CMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST--RDYEN 811 (965)
Q Consensus 736 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~--~~~~~ 811 (965)
.|++|+.|+.. +.+.++++.+++.++.+.+ ++|.+ ++.++.| |++.+.+++++ +++.++++++. .++++
T Consensus 132 ~~s~gGEPll~---~~l~~li~~~~~~g~~~~l~TNG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~~~~~~ 204 (311)
T 2z2u_A 132 AISLSGEPTLY---PYLDELIKIFHKNGFTTFVVSNGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKKEYWES 204 (311)
T ss_dssp EECSSSCGGGS---TTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CCCHHHHHH
T ss_pred EEeCCcCccch---hhHHHHHHHHHHCCCcEEEECCCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCccchHHH
Confidence 88855666554 3477777777777777655 44555 5555554 89999999999 89999999987 67999
Q ss_pred HHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC--CCCCCCCHHHHHHHHHHH
Q psy8199 812 RLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL--YGSSILDPLEFIRTIAVA 889 (965)
Q Consensus 812 ~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l--~~~~~~~~~~~~~~ia~~ 889 (965)
.+++++.+++.| ++...+++..|.+. ++.+.++++++++ ++.+.+.+|+|.++++. ....+++.+++.+....+
T Consensus 205 v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~--~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l 280 (311)
T 2z2u_A 205 ILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKML 280 (311)
T ss_dssp HHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcC--CCEEEEEeeEEccccccccccccCCCHHHHHHHHHHH
Confidence 999999999999 87777766556666 8889999999999 89999999999988763 234567899998888877
Q ss_pred HH
Q psy8199 890 RI 891 (965)
Q Consensus 890 R~ 891 (965)
+.
T Consensus 281 ~~ 282 (311)
T 2z2u_A 281 DE 282 (311)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 242
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.45 E-value=9.6e-13 Score=151.01 Aligned_cols=291 Identities=10% Similarity=0.059 Sum_probs=167.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
.+...++.+.++++++.+.+++.+++||+.|+++++.+++ . .++++|++.++.|+.+. ..+...
T Consensus 107 ~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~------~~gd~Viv~~~~h~s~~-~~~~~~-------- 170 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-E------TGRMGVLVSQGVHPEYR-AVLRAY-------- 170 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-H------HTCCEEEEETTSCHHHH-HHHHHH--------
T ss_pred HHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-c------CCCCEEEEcCccCHhHH-HHHHHH--------
Confidence 3556789999999997555567899999955555544332 2 25678888887765542 111100
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.......++.++... +.. |+++ + .+++++|++.. + |++|.+.+ +++|.++|++|
T Consensus 171 a~~~G~~v~~v~~~~--~~~-----------d~~~----i---~~~t~~v~i~~-p-n~tG~~~~----l~~i~~la~~~ 224 (438)
T 1wyu_A 171 LEAVGAKLLTLPLEG--GRT-----------PLPE----V---GEEVGAVVVQN-P-NFLGALED----LGPFAEAAHGA 224 (438)
T ss_dssp HHHTTCEEEEECCBT--TBC-----------CCCC----C---CTTEEEEEEES-S-CTTSBCCC----HHHHHHHHHHT
T ss_pred HHHCCCEEEEEcCcC--Ccc-----------CHHH----h---CCCeEEEEEEC-C-CCCeEEec----HHHHHHHHHHc
Confidence 000111234444311 111 1222 2 24678888887 6 88998886 99999999999
Q ss_pred CCeEEEecc-ccCCCcccccccccccCCCcceeeec-cccC-----CCcccceeeeecHHHHHhhhcc--C------Ccc
Q psy8199 456 NIHLIADEI-AVGCGRTGKFFACEHAEIWPDFLCLS-KGIT-----GGYLPLSLVMTTDKIYNSIYYK--N------NIN 520 (965)
Q Consensus 456 g~llI~DEv-~tg~gr~G~~~~~~~~~~~pDivt~s-K~l~-----gG~~pig~v~~~~~i~~~~~~~--~------~~~ 520 (965)
|+++|+|-- ++ +|..... ..+ .+|++++| |.++ +| ..+|++++++++++.+... + ...
T Consensus 225 g~~vivd~d~~a-~g~~~~~---~~~--g~D~~~~s~kk~~~~~~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 297 (438)
T 1wyu_A 225 GALFVAVADPLS-LGVLKPP---GAY--GADIAVGDGQSLGLPMGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRR 297 (438)
T ss_dssp TCEEEEECCTTG-GGTBCCH---HHH--TCSEEEEECTTTTCCCGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCE
T ss_pred CCEEEEEechhh-ccCcCCC---ccC--CCCEEEECCcccCCCccCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCc
Confidence 999995522 21 3221111 112 37888874 6432 23 4789999999887765210 0 000
Q ss_pred cc------------cccCCCCC---CHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE
Q psy8199 521 IF------------LHSHSYSG---NPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGM 582 (965)
Q Consensus 521 ~~------------~~~~t~~~---~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~ 582 (965)
.+ ...+|.+. +.++..++...+..+.. ++..++.+++.+++.++|+++ +++........
T Consensus 298 ~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~ 374 (438)
T 1wyu_A 298 GFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV---PGVRPFTPKPF 374 (438)
T ss_dssp EEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCEECSCSSB
T ss_pred ceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEECCCCCe
Confidence 00 01233332 33333222233444432 235666777788888877664 34432222223
Q ss_pred EEEEEEeecCccchhhHHHHHHHHHHHcCcEE--eec----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 583 IWAFDVIIEDPEQIETFSKKFFVAALKNELLL--RPI----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 583 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~--~~~----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+..+.+. .+ .....+.+.|.++||.+ .+. .+.+|+++....+.++++++++++.+.
T Consensus 375 ~~~~~~~--~~----~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 375 FNEFALA--LP----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEV 436 (438)
T ss_dssp CSEEEEE--CS----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEe--CC----CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHH
Confidence 3223332 11 11346888899999998 442 479999998889999999999988653
No 243
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.45 E-value=4.2e-12 Score=143.22 Aligned_cols=295 Identities=12% Similarity=0.029 Sum_probs=170.3
Q ss_pred CCHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 271 SNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
+.++|++|+.+..... .......+......+|.++++++++ .+..++ ++||++|+..++.... .
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g--~e~alv~p~~~sGt~A~~~al~all--------~ 114 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFN--TESAFVRPHFVNGTHAIGAALFGNL--------R 114 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHTC--------C
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhC--CCceEEeCCCCcHHHHHHHHHHHhc--------C
Confidence 3478888887753221 1111123455567889999999995 566666 8999999999988653 3
Q ss_pred CceEEEEEc-CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEE
Q psy8199 345 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423 (965)
Q Consensus 345 ~~~~vi~~~-~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 423 (965)
++++|++.+ +.|++..... ..++. .+..........+.+++.+ .+. .|+++|+++++++ +++.
T Consensus 115 pGD~Vl~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~~--~~~-----------~d~e~l~~~i~~~-~~tk 178 (427)
T 3hvy_A 115 PNDTMMSICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDLK--DGK-----------VDINTVKEELKKD-DSIK 178 (427)
T ss_dssp TTCEEEECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCCB--TTB-----------CCHHHHHHHHHHC-TTEE
T ss_pred CCCEEEEeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecCC--CCC-----------cCHHHHHHHhhCC-CCCE
Confidence 678899998 7887653110 00000 0000111111223344431 111 3788999998742 3567
Q ss_pred EEEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC
Q psy8199 424 AIIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 496 (965)
Q Consensus 424 aii~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG 496 (965)
+|++++. ++|++|.+.+ +++|.++|++ ||+++|+||+|..+...... .....|++ +++|.++|+
T Consensus 179 lV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p-----~~~gaDiv~~S~sK~lgg~ 249 (427)
T 3hvy_A 179 LIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEP-----TDVGADIIAGSLIKNIGGG 249 (427)
T ss_dssp EEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG-----GGGTCSEEEEETTSGGGTT
T ss_pred EEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCC-----cccCCeEEEECCccccccc
Confidence 7777762 2566666554 9999999999 89999999998643211111 12235776 578999876
Q ss_pred ccc-ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--CCc
Q psy8199 497 YLP-LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPK 573 (965)
Q Consensus 497 ~~p-ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~~ 573 (965)
..+ .|++++++++++.+....... ..+.+.+.++..+..++..|+.+ +...++..++..++.+.|+++.. +|.
T Consensus 250 g~~~GG~i~~~~~li~~l~~~~~~~--~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3hvy_A 250 IATTGGYIAGKEEYVTQATFRVTVP--GIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAGFDVLPK 325 (427)
T ss_dssp TCCSCEEEEECHHHHHHHHHHHSCT--TTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred ccceEEEEEECHHHHHHHHHHhhcC--CcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCeecCC
Confidence 434 477888999988876510000 11111222122244444555433 33567778888888888877611 111
Q ss_pred eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 574 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 574 i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
..-++..+++.+.+. + .+.+.++++.+....
T Consensus 326 -~~~~~~~li~~~~l~--~----~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 326 -YNDKRTDIIQAIKFN--D----EKKLIDFIKGIQTAS 356 (427)
T ss_dssp -TTSCCSSSEEEEECS--S----HHHHHHHHHHHHHTC
T ss_pred -CCCCCceEEEEEeCC--C----HHHHHHHHHHhcccc
Confidence 011122337777664 2 223445667776653
No 244
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.44 E-value=7.4e-12 Score=141.21 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHh--h-ccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 272 NSYINKALKNQLN--K-LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 272 ~p~v~~av~~~~~--~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
.++|++|+.+..- . ........+......+|.++++++++ .+..++ ++||++|+..++..... +
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all~--------p 114 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFN--TESALVRPHFVNGTHALGAALFGNLR--------P 114 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHHCC--------T
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhC--CcceEEeCCCccHHHHHHHHHHHHhC--------C
Confidence 3678888876431 1 11112233555668889999999995 455555 89999999999886632 5
Q ss_pred ceEEEEEc-CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 346 KKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 346 ~~~vi~~~-~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
+++|++.+ +.|++..... ...++.. ..........+.+++.... +. .|+++|+++++++ +++.+
T Consensus 115 GD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~-g~-----------~D~e~l~~~l~~~-~~tkl 179 (427)
T 3i16_A 115 GNTMLSVCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKED-GK-----------PNLEEIEKVLKED-ESITL 179 (427)
T ss_dssp TCEEEESSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTT-SS-----------CCHHHHHHHHHTC-TTEEE
T ss_pred CCEEEEeCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccC-CC-----------cCHHHHHHHhhCC-CCCEE
Confidence 68899988 7776652111 0000000 0001111123344443211 11 3788999998742 35677
Q ss_pred EEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCc
Q psy8199 425 IIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY 497 (965)
Q Consensus 425 ii~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~ 497 (965)
|++++. ++|++|.+.+ +++|.++|++ ||+++|+||+|..+...... .....|++ +++|.++|+.
T Consensus 180 V~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p-----~~~gaDiv~~S~sK~lgg~g 250 (427)
T 3i16_A 180 VHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEP-----TDVGADLIAGSLIKNIGGGI 250 (427)
T ss_dssp EEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCG-----GGGTCSEEEEETTSGGGTTT
T ss_pred EEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCc-----cccCCeEEEecCcccCCCCC
Confidence 777652 2567776655 9999999999 99999999998644211111 11235776 5789998754
Q ss_pred c-cceeeeecHHHHHhhhccCCcccccccCCCCCCHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--CCc
Q psy8199 498 L-PLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA-CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPK 573 (965)
Q Consensus 498 ~-pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~-~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~~ 573 (965)
. ..|++++++++++.+....... ..+.+. +.... +..++..|+.+ +...++..++..++.+.|+++.. +|.
T Consensus 251 ~~~gG~i~~~~~li~~l~~~~~~~--~~g~~~-~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3i16_A 251 APTGGYLAGTKDCIEKTSYRLTVP--GIGGEC-GSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFEVMPK 325 (427)
T ss_dssp CCSCEEEEECHHHHHHHHHHHSCT--TTGGGC-CCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred CceEEEEEECHHHHHHHHHhcccC--ccCccC-CccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCeecCC
Confidence 3 3578889999998876510000 011111 11122 34444444433 34567778888888888877611 111
Q ss_pred eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 574 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 574 i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
..-+...+++.+.+. + ...+.+|++.|....
T Consensus 326 -~~~~~~~~i~~i~l~--~----~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 326 -YDEKRSDIIQSIKFN--D----KDKLIEFCKGIQTGS 356 (427)
T ss_dssp -TTSCCSSSCEEEECS--S----HHHHHHHHHHHHHTC
T ss_pred -CCCCCccEEEEEEEC--C----HHHHHHHHHHHhhcC
Confidence 011112237777774 2 233456777777664
No 245
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.41 E-value=5.5e-12 Score=151.11 Aligned_cols=308 Identities=11% Similarity=0.018 Sum_probs=174.4
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCe-EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~-v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.+.....++.+.++++++ .+. +++++|+++|+.+++..... ++++||+..+.|+....+.+..+|..
T Consensus 170 ~~~~~i~e~e~~lA~~~g--ae~~i~v~nGtt~an~~ai~al~~--------pGD~VLv~~~~H~S~~~~~~~l~Ga~-- 237 (730)
T 1c4k_A 170 IHEGPAVAAEKHAARVYN--ADKTYFVLGGSSNANNTVTSALVS--------NGDLVLFDRNNHKSVYNSALAMAGGR-- 237 (730)
T ss_dssp TTBTHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHTTTTCCE--
T ss_pred CChHHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHhcC--------CCCEEEEcCCchHHHHHHHHHHCCCE--
Confidence 455677889999999996 344 45556556999999887642 56788888877655433212333311
Q ss_pred cchhcccCCCeeEecCC-CCCCCCCCCChhHHHHHHHHHH-----HHHHHhCC-C---c----EEEEEEccccccCCCcc
Q psy8199 373 KEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDL-----EILLKKNH-N---K----IAAIIIEPLVQCAGGMI 438 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~~-~---~----~aaii~ep~v~~~~G~~ 438 (965)
.++++.. +..+... ..|+++| ++++++.. + . .++++++| +.+|.+
T Consensus 238 ----------~v~v~~~~~~~~i~g--------~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p---n~~G~v 296 (730)
T 1c4k_A 238 ----------PVYLQTNRNPYGFIG--------GIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG---TYDGTI 296 (730)
T ss_dssp ----------EEEECEEECTTCCEE--------EECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB---CTTSEE
T ss_pred ----------EEEEeCCccccCccC--------CCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC---CCCCee
Confidence 1122110 0000000 0123444 77776431 0 1 34555666 468888
Q ss_pred cCChHHHHHHHHHHHhcCCeEEEeccccC---CCcccc-cccc--cccCCC-cc-ee--eeccccCCCcccce-eeeecH
Q psy8199 439 MYDSIYLKLVREICNNYNIHLIADEIAVG---CGRTGK-FFAC--EHAEIW-PD-FL--CLSKGITGGYLPLS-LVMTTD 507 (965)
Q Consensus 439 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg---~gr~G~-~~~~--~~~~~~-pD-iv--t~sK~l~gG~~pig-~v~~~~ 507 (965)
.+ +++|.++|++||+++|+||+|.+ |+..+. ..+. +.++.. |+ ++ +++|+++| .+.| +++.++
T Consensus 297 ~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g--~~~gg~I~v~~ 370 (730)
T 1c4k_A 297 YN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG--FSQTSQIHKKD 370 (730)
T ss_dssp EC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC--CTTCEEEEEEC
T ss_pred cC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC--CCCEEEEEecc
Confidence 77 99999999999999999999963 221111 1111 122431 22 44 46898866 3444 443443
Q ss_pred HHH---------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHc-ccCCCce
Q psy8199 508 KIY---------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTS-LITHPKI 574 (965)
Q Consensus 508 ~i~---------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~i 574 (965)
+.+ ..+.. .+....+.+.+...+++..++++.+.. .++.+++.++.+++++.|++ +.....+
T Consensus 371 ~~l~g~~~~i~~~~~~~-----~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~ 445 (730)
T 1c4k_A 371 SHIKGQLRYCDHKHFNN-----SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPF 445 (730)
T ss_dssp GGGTTSTTCCCHHHHHH-----HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEES
T ss_pred hhhcCcccccCHHHHHH-----HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEc
Confidence 321 11111 011122344567777777777776654 34678888888999998876 3211100
Q ss_pred e-ee--------------------------------ec--eeE-E-----EEEEEee---cCc--cchhhHHHHHHHHHH
Q psy8199 575 I-NF--------------------------------RQ--KGM-I-----WAFDVII---EDP--EQIETFSKKFFVAAL 608 (965)
Q Consensus 575 ~-~v--------------------------------~g--~G~-~-----~~i~~~~---~~~--~~~~~~~~~~~~~l~ 608 (965)
. .. .+ .+. + +.+.... .++ ......+..+.+.|.
T Consensus 446 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~ 525 (730)
T 1c4k_A 446 VPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLR 525 (730)
T ss_dssp SCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHH
Confidence 0 00 00 111 1 2222210 000 000112446788899
Q ss_pred HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 609 KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 609 ~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++||.+...+ +.+|++++...++++++.+++++.+..
T Consensus 526 e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~ 563 (730)
T 1c4k_A 526 DHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQ 563 (730)
T ss_dssp HTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9999988754 789999999999999999999887654
No 246
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.40 E-value=1.3e-12 Score=148.94 Aligned_cols=318 Identities=9% Similarity=0.005 Sum_probs=182.9
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-c-cc--cccCC-C---CcHHHHHHHHHHHhhcC--CCCCeEEEcCCh
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-L-EH--VMLSN-L---THKPVIKLSEKLSSLTQ--YKLGHCFYGSDG 323 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~-~~--~~~~~-~---~~~~~~~la~~l~~~~~--~~~~~v~~~~sG 323 (965)
+..+|+..|.. .++ .++.+.+++.+++.. . .. |.... + ..+....+++.+....+ ...+++++++|+
T Consensus 56 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~ 132 (427)
T 2hox_A 56 GCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV 132 (427)
T ss_dssp TCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred CceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCH
Confidence 34567665533 232 345677777766632 1 11 22222 2 34445555555544321 346799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
++|+..++...........-.+++.|++.+++|.++.......+... +...
T Consensus 133 ~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~---------------- 183 (427)
T 2hox_A 133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKG-------------YVWA---------------- 183 (427)
T ss_dssp HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTT-------------EEEE----------------
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCee-------------eeec----------------
Confidence 99999999876100000000256889999999987744333322211 0000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.|+++|++++.+ ++.+|++.. ++|++|.+.+ + +++ ++..|.||.+- . .......+...
T Consensus 184 --~d~~~l~~~~~~---~~k~v~l~~-p~NPtG~~~~--~-------~l~--~~~~i~d~~~~--~---~~~s~~~~~~~ 241 (427)
T 2hox_A 184 --GNAANYVNVSNP---EQYIEMVTS-PNNPEGLLRH--A-------VIK--GCKSIYDMVYY--W---PHYTPIKYKAD 241 (427)
T ss_dssp --EEGGGGTTCSCG---GGEEEEEES-SCTTTCCCCC--C-------SST--TCEEEEECTTC--S---TTTSCCCSCBC
T ss_pred --CCHHHHHHhhcC---CceEEEEcC-CCCCcccccH--H-------HHc--CCCEEEeeccc--C---CCCCccccCCC
Confidence 134566655532 344444444 4899998875 3 222 55677787763 1 11111111112
Q ss_pred ccee--eeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---------ccc-
Q psy8199 484 PDFL--CLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---------KDN- 549 (965)
Q Consensus 484 pDiv--t~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---------~~~- 549 (965)
.+++ +|||.++ .| +++|++++ ++++++.+.. +....+.+.+++++.++.++|+... -++
T Consensus 242 ~~i~~~S~SK~~g~~G-~RiG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~ 314 (427)
T 2hox_A 242 EDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLN------YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDL 314 (427)
T ss_dssp CSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSH
T ss_pred ceEEEEeChhcCCCCC-ceEEEEEECCHHHHHHHHH------HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHH
Confidence 3444 6899876 34 89999999 5888887765 2233456678999998888887531 122
Q ss_pred ---HHHHHHHHHHHHHHHHHcccCCCceee--------------eece-eEEEEEEEeecCccchhhHHHHHHHHH-HHc
Q psy8199 550 ---ILQRISQDMKKITKALTSLITHPKIIN--------------FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAA-LKN 610 (965)
Q Consensus 550 ---~~~~~~~~~~~l~~~L~~l~~~~~i~~--------------v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~ 610 (965)
..++++++.+++.+.|+++ +++.. ..+. |+++.+.+. .+ ...+.+.+ .++
T Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~-~~-------~~~~~~~ll~~~ 383 (427)
T 2hox_A 315 NTFGFKKLRERWVNITALLDQS---DRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE-WE-------EDKDCYQTFQNG 383 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---SSEECCCCCSCEEETTTTEEECCCCSEEEEEEC-SG-------GGCSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---cCccccccccccccccccccCCCCceEEEEECC-Cc-------HHHHHHHHHHHC
Confidence 3455666667777776553 33321 1222 566666664 11 12344555 478
Q ss_pred CcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 611 ELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 611 Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||.++|+ .+++|++.. .++++++++++++.+.+
T Consensus 384 gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 384 RINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMV 422 (427)
T ss_dssp TEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 9999874 368999954 58889999998887543
No 247
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.37 E-value=5.9e-12 Score=138.36 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=144.2
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----------CCCCEEEEeeccCCCCcccHHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----------DGATRFCMGAAWRELKDRDLDNIENMICE 758 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----------~g~~~i~l~~g~~~~~~~~~~~~~~~~~~ 758 (965)
+.+|+++|.||..... . ..+.++++||++++..... .++..|.|+|++.|+. .++.+.++++.
T Consensus 122 q~GCnl~C~fC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLl--n~d~v~~~i~~ 194 (404)
T 3rfa_A 122 QVGCALECKFCSTAQQ---G--FNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLL--NLNNVVPAMEI 194 (404)
T ss_dssp EEECSSCCTTCGGGTT---C--EEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGG--CHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCCC---C--CCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCccc--CHHHHHHHHHH
Confidence 5799999999975431 1 2345899999999876643 2578899997777754 46889999999
Q ss_pred HHh-cCc-----EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHH-HHHHcCC--
Q psy8199 759 VKK-IGL-----ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLK-NVRNVGI-- 824 (965)
Q Consensus 759 i~~-~~~-----~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~-~~~~~Gi-- 824 (965)
+++ .|+ .+++ ++|.+ +.+++|.+.+...+.+++.+ +++.++++.+ ..+.++.+++++ .+.+.|.
T Consensus 195 lk~~~Gl~~s~r~itlsTnG~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~ 272 (404)
T 3rfa_A 195 MLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 272 (404)
T ss_dssp HHSTTTTCCCGGGEEEEESCCH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTT
T ss_pred HHhhcCcCcCCCceEEECCCcH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCc
Confidence 987 466 5555 45665 45788888866677899999 8999999984 568999999995 4566776
Q ss_pred -ceee--eEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 825 -NICC--GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 825 -~v~~--~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
++.. .+|-|++++.+++.+.+++++.++ ..|.+.+|.|+++++ .++++.+++.+...+++..
T Consensus 273 ~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~---~~~ps~e~i~~f~~iL~~~ 337 (404)
T 3rfa_A 273 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAP---YGRSSNSRIDRFSKVLMSY 337 (404)
T ss_dssp TCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCC---CCBCCHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEecCCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCC---CCCCCHHHHHHHHHHHHHc
Confidence 6654 344566799999999999999986 467788888887764 4567888888888777754
No 248
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.33 E-value=1.6e-11 Score=148.60 Aligned_cols=311 Identities=8% Similarity=0.016 Sum_probs=179.5
Q ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
+.....++.+.+++.++.. +.+++++|+++|+.+++..... ++++|++..++|+....+ +..+|.
T Consensus 203 ~~g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~--------~GD~Vlv~~~~h~s~~~~-~~~~G~----- 267 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--------DNDVVVVDRNCHKSIEQG-LMLTGA----- 267 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHH-HHHHCC-----
T ss_pred CccHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcC--------CCCEEEECCCchHHHHHH-HHHcCC-----
Confidence 4556778888888988632 3455666667899999887642 568899888887554222 222221
Q ss_pred hhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCcE--------EEEEEccccccCCCcccCChHHH
Q psy8199 375 IYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKI--------AAIIIEPLVQCAGGMIMYDSIYL 445 (965)
Q Consensus 375 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------aaii~ep~v~~~~G~~~~~~~~l 445 (965)
..++++.... .+.....+. ...|+++|++++++.+... ++++++| +.+|.+.+ +
T Consensus 268 -------~~v~v~~~~~~~g~~g~i~~---~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p---n~~G~v~d----l 330 (755)
T 2vyc_A 268 -------KPVYMVPSRNRYGIIGPIYP---QEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC---TYDGVCYN----A 330 (755)
T ss_dssp -------EEEEECCCBCTTSCBCCCCG---GGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS---CTTSEEEC----H
T ss_pred -------EEEEEeCCCCccccccccCc---CCCCHHHHHHHHHhCccccccccCCCeEEEEECC---CCCceecC----H
Confidence 1223332110 000000000 0016788999887642221 4566666 46788877 9
Q ss_pred HHHHHHHHhcCCeEEEeccccCCCcccccc--cccccCCCcce------e--eeccccCCCccc-ceeeeecHH--HH--
Q psy8199 446 KLVREICNNYNIHLIADEIAVGCGRTGKFF--ACEHAEIWPDF------L--CLSKGITGGYLP-LSLVMTTDK--IY-- 510 (965)
Q Consensus 446 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pDi------v--t~sK~l~gG~~p-ig~v~~~~~--i~-- 510 (965)
++|.++|++||+++|+||+|.+.-..+..+ .....+...|+ + +++|+++| .+ .|++.++++ .+
T Consensus 331 ~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g--~~~g~~i~~~~~~~~i~~ 408 (755)
T 2vyc_A 331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA--LSQASYIHVREGRGAINF 408 (755)
T ss_dssp HHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC--CTTCEEEEEECCBTCCCH
T ss_pred HHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC--cCCeeeeeecCcccccCH
Confidence 999999999999999999997421222211 01112200232 3 56898876 34 455556543 11
Q ss_pred HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccC---------CCcee--e
Q psy8199 511 NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLIT---------HPKII--N 576 (965)
Q Consensus 511 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~---------~~~i~--~ 576 (965)
..+.. .+....+.+.+.+.+++..++++.+..+ ++.++..++.++++++|+++.. ...+. .
T Consensus 409 ~~~~~-----~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 409 SRFNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp HHHHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSE
T ss_pred HHHHH-----HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchh
Confidence 12211 0111223456777888888888877543 5788888899999999977522 10000 1
Q ss_pred eec---------------------------------------ee------EEEEEEEeecCccch-----hhHHHHHHHH
Q psy8199 577 FRQ---------------------------------------KG------MIWAFDVIIEDPEQI-----ETFSKKFFVA 606 (965)
Q Consensus 577 v~g---------------------------------------~G------~~~~i~~~~~~~~~~-----~~~~~~~~~~ 606 (965)
+.+ .| ..+.+... +.+.+. .--+..+.+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~-~~~~~G~~~~~g~~~~~l~~~ 562 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAP-GMGEDGELEETGVPAALVTAW 562 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECS-CBCTTSSBCSSCCCHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcC-CCCCCCCccccCCcHHHHHHH
Confidence 100 11 12233221 100000 0112457778
Q ss_pred HHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 607 ALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 607 l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|.++||.+...+ +.+|+..+...|+++++.+++++.+..
T Consensus 563 L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~ 602 (755)
T 2vyc_A 563 LGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFK 602 (755)
T ss_dssp HHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred HHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 888999887543 789999999999999999998887643
No 249
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.32 E-value=5.3e-12 Score=141.76 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=136.1
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
..+.+ |++|+.+|.||..+..... ....++.+++.+.++.+.+ .|++.|.|+||+ |+...+ +.+.++++.+++
T Consensus 117 v~l~v-T~~Cnl~C~yC~~~~~~~~---~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGE-Pll~~d-~~L~~il~~l~~ 190 (416)
T 2a5h_A 117 VLLLI-TDMCSMYCRHCTRRRFAGQ---SDDSMPMERIDKAIDYIRNTPQVRDVLLSGGD-ALLVSD-ETLEYIIAKLRE 190 (416)
T ss_dssp EEEEE-ESCCSSCCTTCTTTTTTTS---SSSBCCHHHHHHHHHHHHTCTTCCEEEEEESC-TTSSCH-HHHHHHHHHHHT
T ss_pred EEEec-CCCccccCcCCCCcccCCC---ccCCCCHHHHHHHHHHHHhcCCCcEEEEECCC-CCCCCH-HHHHHHHHHHHh
Confidence 44566 9999999999976542211 2235899999999998888 699999998764 544432 345566666665
Q ss_pred c-C---cEeEEec-----CCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE
Q psy8199 762 I-G---LETCLTL-----GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831 (965)
Q Consensus 762 ~-~---~~i~~~~-----~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 831 (965)
. + +.+.++. ..++++.++.|+++ +.+.+++++ ++ +++. ++.+++++.++++|+.+....+
T Consensus 191 ~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~-----~~v~~ai~~L~~aGi~v~i~~v 260 (416)
T 2a5h_A 191 IPHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT-----EESTRACQLLADAGVPLGNQSV 260 (416)
T ss_dssp STTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC-----HHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh-----HHHHHHHHHHHHcCCEEEEEEE
Confidence 3 3 3333332 35689999999998 888999998 55 3343 8999999999999998776655
Q ss_pred E--ecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q psy8199 832 I--GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 832 ~--Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp 894 (965)
+ |++++.+++.+.++++.+++ +....++.+-+.+||++.. .+..+..+++..+|..++
T Consensus 261 ll~GvNd~~e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~---~~~~~~~eil~~l~~~~~ 320 (416)
T 2a5h_A 261 LLRGVNDCVHVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFR---TPVSKGIEIIEGLRGHTS 320 (416)
T ss_dssp CCTTTTCSHHHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGC---CCHHHHHHHHHTTBTTBC
T ss_pred EECCCCCCHHHHHHHHHHHHHcC--CceEEEeecCCCCCccccc---CCcccHHHHHHHHHHHCC
Confidence 5 67789999999999999998 5554444333457887543 356666777766665443
No 250
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.31 E-value=1.4e-11 Score=136.32 Aligned_cols=319 Identities=10% Similarity=0.028 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHhhccccccC----CC----CcHHHHHHHHHHHhhcCCCC-CeEEE-cCChhHHHHHHHHHHHHHH
Q psy8199 269 GHSNSYINKALKNQLNKLEHVMLS----NL----THKPVIKLSEKLSSLTQYKL-GHCFY-GSDGASAVEVALKMSFHYW 338 (965)
Q Consensus 269 Gh~~p~v~~av~~~~~~~~~~~~~----~~----~~~~~~~la~~l~~~~~~~~-~~v~~-~~sGseA~~~Al~~a~~~~ 338 (965)
+.-+|+|.+|+.+.+.+......+ .. ..+...+..+.++++++... .+|+| +.|||+|++.|++.....
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~- 100 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL- 100 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG-
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC-
Confidence 346899999999887643111101 11 13345677778889887543 47888 589999999999866421
Q ss_pred HhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy8199 339 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418 (965)
Q Consensus 339 ~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 418 (965)
.++++++....++++.... .........+..++.+..... ++++++..+
T Consensus 101 -----~~Gd~v~~~~~g~~~~~~~-----------~~a~~~G~~~~~~~~~~~~~~------------~~~~~~~~i--- 149 (377)
T 3e77_A 101 -----KAGRCADYVVTGAWSAKAA-----------EEAKKFGTINIVHPKLGSYTK------------IPDPSTWNL--- 149 (377)
T ss_dssp -----STTCEEEECCCSHHHHHHH-----------HHHTTTSEEEECSCCCSSSCS------------CCCGGGCCC---
T ss_pred -----CCCCeEEEEECCHHHHHHH-----------HHHHHhCCceEEeccCCCcCC------------CCChHHhcc---
Confidence 1246777666555543111 000000111222232211111 122233333
Q ss_pred CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCC
Q psy8199 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGG 496 (965)
Q Consensus 419 ~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG 496 (965)
.+++..|.+-. ..+.+|.+.| + +|+++|+++++|-+|+ +|.. .+..+.++ ++++| |.+ |
T Consensus 150 ~~~t~lV~~~h-~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~-g- 210 (377)
T 3e77_A 150 NPDASYVYYCA-NETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNV-G- 210 (377)
T ss_dssp CTTCSCEEEES-EETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTT-S-
T ss_pred CCCccEEEEeC-ccCchheEch----h-----hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEeccccc-C-
Confidence 23444444433 3455698887 2 5889999999999997 5422 33344444 35554 777 3
Q ss_pred cccceeeeecHHHHHhhhccCCccccc-------ccCCC-CCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHH
Q psy8199 497 YLPLSLVMTTDKIYNSIYYKNNINIFL-------HSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKA 564 (965)
Q Consensus 497 ~~pig~v~~~~~i~~~~~~~~~~~~~~-------~~~t~-~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~ 564 (965)
...+|+++.++++.+.+... ...+. .+.++ +.|..+..+..++|+++.+. .+.++.+++.+++.++
T Consensus 211 p~G~g~l~~~~~~l~~~~~~--~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~ 288 (377)
T 3e77_A 211 SAGVTVVIVRDDLLGFALRE--CPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEI 288 (377)
T ss_dssp CTTCEEEEEETTSCSCCCTT--SCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEcHHHHhhccCC--CCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 35688888888876443210 00111 12233 34555677777889987654 3566677777888888
Q ss_pred HHcccCCCcee--e--eece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHH
Q psy8199 565 LTSLITHPKII--N--FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 565 L~~l~~~~~i~--~--v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~ 636 (965)
|+++ +++. . ...+ +.++.|.+. +..........+...+.++||.++++. +.+|++.....+.++++.
T Consensus 289 L~~~---~g~~~~~~~~~~rs~~ivsf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~ 363 (377)
T 3e77_A 289 IDNS---QGFYVCPVEPQNRSKMNIPFRIG--NAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQK 363 (377)
T ss_dssp HHTS---TTSEECCSCGGGBCSSEEEEEES--STTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred HHhc---CCceecCCCHHHcCCcEEEEEcC--CCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHH
Confidence 7765 3322 1 1112 345667664 211112222356677889999987642 569999999999999999
Q ss_pred HHHhhhccc
Q psy8199 637 MTSAIFQTF 645 (965)
Q Consensus 637 ~~~~l~~~~ 645 (965)
+++.+++..
T Consensus 364 l~~al~~~~ 372 (377)
T 3e77_A 364 LAAFMKKFL 372 (377)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 251
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.27 E-value=4.2e-12 Score=141.40 Aligned_cols=322 Identities=10% Similarity=0.032 Sum_probs=180.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccc--------cccCCCCcHHHHHHHHHHHhhcCCCC-CeEEE-cCCh
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--------VMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFY-GSDG 323 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~--------~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~-~~sG 323 (965)
+.|+|..+... -+|+|++|+.+.+.+... .+......+..++..+.++++++... .+|+| ++||
T Consensus 27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSCC------CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 57888765533 589999999876644211 01111123445677788888887533 47888 6999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC---CCCCCCCCCCh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSA 400 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 400 (965)
|+|++.+++.... ++++++....+.++...... + .... .+..++.+ ....
T Consensus 101 T~a~n~ai~~l~~--------~gd~v~~~~~~~~~~~~~~~-a----------~~~G-~v~~v~~~~~~~G~~------- 153 (386)
T 3qm2_A 101 RGQFAGVPLNLLG--------DKTTADYVDAGYWAASAIKE-A----------KKYC-APQIIDAKITVDGKR------- 153 (386)
T ss_dssp THHHHHHHHHHCT--------TCCEEEEEESSHHHHHHHHH-H----------TTTS-EEEEEECEEEETTEE-------
T ss_pred hHHHHHHHHhccC--------CCCeEEEEeCCHHHHHHHHH-H----------HHhC-CeEEEecCcccCCCC-------
Confidence 9999999986532 34666655555554321100 0 0011 23444433 1100
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcc-cCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMI-MYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
.+++++++++. ++++.|.+-. +.+.+|.+ .| +++| + +|+++++|-+|+ +|.. .+..+.
T Consensus 154 -----~~~~~~~~~l~---~~t~lV~~~h-~et~tG~~i~p----i~~i---~--~g~~~~vDa~qs-~g~~--pidv~~ 212 (386)
T 3qm2_A 154 -----AVKPMREWQLS---DNAAYLHYCP-NETIDGIAIDE----TPDF---G--PEVVVTADFSST-ILSA--PLDVSR 212 (386)
T ss_dssp -----EECCGGGCCCC---TTCSCEEECS-EETTTTEECCC----CCCC---C--TTCCEEEECTTT-TTSS--CCCGGG
T ss_pred -----CCchHHHhhcC---CCCcEEEEEC-CcCCcCEecCc----hhhh---c--CCCEEEEEcccc-cCCC--CCCccc
Confidence 02234444443 3455555544 44556985 65 3333 3 799999999997 5432 333444
Q ss_pred cCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCc----ccc-cccCCC-CCCHHHHHHHHHHHHHHhcc---
Q psy8199 480 AEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNI----NIF-LHSHSY-SGNPLACCAALATLEIFNKD--- 548 (965)
Q Consensus 480 ~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~----~~~-~~~~t~-~~~~~~~aaa~a~L~~~~~~--- 548 (965)
++ ++++| |.+ | ...+|++++++++.+.+....+. ... ..+..+ +.|..+.++..++|+.+.+.
T Consensus 213 ~~----~~~~s~hK~l-G-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~ 286 (386)
T 3qm2_A 213 YG----VIYAGAQKNI-G-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGV 286 (386)
T ss_dssp CS----EEEEETTTTT-C-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHH
T ss_pred cC----EEEEeccccc-C-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 44 34454 777 3 35688999998875433210000 000 011111 23445666777788876543
Q ss_pred -cHHHHHHHHHHHHHHHHHcccCCCceee---eece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CE
Q psy8199 549 -NILQRISQDMKKITKALTSLITHPKIIN---FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NT 620 (965)
Q Consensus 549 -~~~~~~~~~~~~l~~~L~~l~~~~~i~~---v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~ 620 (965)
...++.+++.+++.++|+++ +.+.. ...+ ..++.|.+. + ......+...|.++||.++.+. +.
T Consensus 287 ~~i~~~~~~l~~~l~~~l~~~---~~~~~~~~~~~rs~~iv~f~~~--~----~~~~~~~~~~L~~~gI~~~~g~~~~~~ 357 (386)
T 3qm2_A 287 AAMHKINQQKAELLYGVIDNS---DFYRNDVAQANRSRMNVPFQLA--D----NTLDKVFLEESFAAGLHALKGHRVVGG 357 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---SSEECCBCGGGBCSSEEEEEES--S----GGGHHHHHHHHHHTTEECCBCCTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHcCceEEEEECC--C----ccccHHHHHHHHHCCCEEeCCCCCcCe
Confidence 35667777888888888765 21111 1112 235666654 2 1122356667889999987642 46
Q ss_pred EEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+|+++....|.++++.+++.+.+.
T Consensus 358 iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 358 MRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 252
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.20 E-value=1.5e-10 Score=137.35 Aligned_cols=308 Identities=8% Similarity=0.054 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCCh-hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDG-ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sG-seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.++....++.+++++.++ .++++|.++| +.||.+++.... .++++|++..++|... ..++..+|..
T Consensus 192 ~~~g~i~eaE~~lA~~fG--a~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H~S~-~~~l~lsGa~-- 258 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFN--ADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCHKSL-THLMMMSDVT-- 258 (715)
T ss_dssp TTBTHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHH-HHHHHHSCCE--
T ss_pred CCcHHHHHHHHHHHHHhC--CCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCccHHH-HHHHHHcCCE--
Confidence 456677889999999994 5777776666 699988888664 2567788777665443 3333333311
Q ss_pred cchhcccCCCeeEecCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcE---EEEEEccccccCCCcccCChHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKI---AAIIIEPLVQCAGGMIMYDSIYLKLV 448 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~---aaii~ep~v~~~~G~~~~~~~~l~~l 448 (965)
.++++.. +.++...+.+.. ..|+++|+++++++++.. ++|+++| +..|.+.+ +++|
T Consensus 259 ----------pv~v~~~~~~~gi~~~i~~~---~~d~e~Le~~l~~~~~~k~p~~vivt~p---n~~G~v~d----l~~I 318 (715)
T 3n75_A 259 ----------PIYFRPTRNAYGILGGIPQS---EFQHATIAKRVKETPNATWPVHAVITNS---TYDGLLYN----TDFI 318 (715)
T ss_dssp ----------EEEECCCBCTTCCBCCCCGG---GGSHHHHHHHHHHSTTCCSCSEEEEESS---CTTSEEEC----HHHH
T ss_pred ----------EEEEeccccccccccCcccc---cCCHHHHHHHHhhCcCccCceEEEEECC---CCCCccCC----HHHH
Confidence 1222211 001100000000 016789999998653322 4566666 77898887 8899
Q ss_pred HHHHHhcCCeEEEeccccCCCccccccc-ccc--cCCCccee-----eeccccCCCccc-ceeeeecHHHH-HhhhccCC
Q psy8199 449 REICNNYNIHLIADEIAVGCGRTGKFFA-CEH--AEIWPDFL-----CLSKGITGGYLP-LSLVMTTDKIY-NSIYYKNN 518 (965)
Q Consensus 449 ~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~--~~~~pDiv-----t~sK~l~gG~~p-ig~v~~~~~i~-~~~~~~~~ 518 (965)
.++|++++ +|+||+|.+....+..+. ... .+..+|++ +++|+++| +. .|++.++.++. ..+..
T Consensus 319 ~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g--ltqgs~i~v~~~i~~~~~~~--- 391 (715)
T 3n75_A 319 KKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA--FSQASMIHVKGDVNEETFNE--- 391 (715)
T ss_dssp HHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC--CTTCEEEEEESCCCHHHHHH---
T ss_pred HHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccC--CCCeeEEEeCchhhHHHHHH---
Confidence 99998774 799999974212232221 111 12236754 57899876 32 35566655421 11221
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccC-CCc--eee-----ee---------
Q psy8199 519 INIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT-HPK--IIN-----FR--------- 578 (965)
Q Consensus 519 ~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~-~~~--i~~-----v~--------- 578 (965)
......|.+.+++.+|+..++++.++. +++.+++.++.++++++|+++.. .++ +.. +.
T Consensus 392 --~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (715)
T 3n75_A 392 --AYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRS 469 (715)
T ss_dssp --HHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCT
T ss_pred --HHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCc
Confidence 112234556788899999999988863 45789999999999999987632 000 000 00
Q ss_pred ----------ceeE-E-----EEEEEee--cCccc--hhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHH
Q psy8199 579 ----------QKGM-I-----WAFDVII--EDPEQ--IETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 579 ----------g~G~-~-----~~i~~~~--~~~~~--~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~ 637 (965)
+.+. + +.+.... .++.. ..-.+..+.+.|.++||.+.-. .+.+-+..+...++++++.+
T Consensus 470 ~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L 549 (715)
T 3n75_A 470 DSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSL 549 (715)
T ss_dssp TCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHH
T ss_pred ccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHH
Confidence 0011 0 1111110 00000 0011335667788899987643 36677777778899999988
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
++++.+
T Consensus 550 ~~aL~~ 555 (715)
T 3n75_A 550 LRALTD 555 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 253
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.19 E-value=6.1e-10 Score=122.71 Aligned_cols=309 Identities=9% Similarity=-0.018 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHhhccccccC----CC----CcHHHHHHHHHHHhhcCCC-CCeEEE-cCChhHHHHHHHHHHHHHHHh
Q psy8199 271 SNSYINKALKNQLNKLEHVMLS----NL----THKPVIKLSEKLSSLTQYK-LGHCFY-GSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~----~~----~~~~~~~la~~l~~~~~~~-~~~v~~-~~sGseA~~~Al~~a~~~~~~ 340 (965)
-+|+|.+|+.+.+.+......+ .. ..+..++..+.++++++.. ..+|+| ++|||+|++.|++...
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 4899999999877542111000 11 1244567777889988754 347888 9999999999988552
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCC-CCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNI-NKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
+++++.....+.++.... .........+..++.+..... . ++++ + |.
T Consensus 91 ----~~~~~~~i~~~~~~~~~~-----------~~a~~~G~~v~~~~~~~~g~~~~-----------~~~~-~--l~--- 138 (361)
T 3m5u_A 91 ----LNGVCEYANTGVWTKKAI-----------KEAQILGVNVKTVASSEESNFDH-----------IPRV-E--FS--- 138 (361)
T ss_dssp ----CSSCEEEEECSHHHHHHH-----------HHHHHTTCCEEEEEECTTTTSCS-----------CCCC-C--CC---
T ss_pred ----CCCeEEEEeCCHHHHHHH-----------HHHHHcCCceEEEecccCcCCCc-----------CChh-h--cC---
Confidence 123332222233332110 000111224455554422110 0 1122 2 33
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~ 497 (965)
+++..|.+-. ..+.+|.+.+. +++ +|+++++|-+|+ +|.. .+..+ ..|++++| |.+ | .
T Consensus 139 ~~t~lv~~~~-~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~-g-p 198 (361)
T 3m5u_A 139 DNADYAYICS-NNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNA-G-I 198 (361)
T ss_dssp TTSSEEEEES-EETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTS-S-C
T ss_pred CCCCEEEEeC-CCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhcc-C-C
Confidence 2334444433 34456887652 344 499999999997 5432 22222 25888886 677 3 3
Q ss_pred ccceeeeecHHHHHhhhcc-CCc----ccc-cccCCC-CCCHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHH
Q psy8199 498 LPLSLVMTTDKIYNSIYYK-NNI----NIF-LHSHSY-SGNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKALT 566 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~-~~~----~~~-~~~~t~-~~~~~~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~L~ 566 (965)
..+|+++.++++.+.+... .+. ... ..+.++ +.|..++.+..++|+.+.+. + ..++.+++.+++.++|+
T Consensus 199 ~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~ 278 (361)
T 3m5u_A 199 SGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID 278 (361)
T ss_dssp TTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999887665420 000 000 012233 34566777788899988654 3 55667778888888887
Q ss_pred cccCCCce-ee-e--ece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHH
Q psy8199 567 SLITHPKI-IN-F--RQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 567 ~l~~~~~i-~~-v--~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~ 638 (965)
++ +++ .. + ..+ ..++.|.+. +. ......+...|.++||.++++. +.+|+++....+.++++.++
T Consensus 279 ~~---~g~~~~~~~~~~rs~~ivsf~~~--~~---~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~ 350 (361)
T 3m5u_A 279 LS---NGFYKGHADKKDRSLMNVSFNIA--KN---KDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLC 350 (361)
T ss_dssp TS---TTSEEESSCGGGBCSSEEEEEES--SC---TTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHH
T ss_pred HC---CCeeeccCCHHHcCCeEEEEECC--Cc---hhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHH
Confidence 65 322 11 1 112 235666654 10 0112356678889999987642 56999999999999999999
Q ss_pred Hhhhcc
Q psy8199 639 SAIFQT 644 (965)
Q Consensus 639 ~~l~~~ 644 (965)
+.+.+.
T Consensus 351 ~al~~~ 356 (361)
T 3m5u_A 351 EFMKEF 356 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 254
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.05 E-value=9.9e-09 Score=112.66 Aligned_cols=289 Identities=11% Similarity=0.105 Sum_probs=169.2
Q ss_pred CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC---CCC
Q psy8199 315 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT---PDS 391 (965)
Q Consensus 315 ~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 391 (965)
...++.+++|-++.+++.++... +.++.++||+ ...-|=+.+-++.+.|-.. ++++. +.
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~----~rpg~d~VIv-pRn~HKSv~kAliL~Gl~P------------v~V~p~~d~~- 196 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRH----KRPKAKYIIW-PRIDQKSCFKSMITAGFEP------------VVIENVLEGD- 196 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHH----HCTTCCEEEE-ECCCCHHHHHHHHHTTCEE------------EEECEEEETT-
T ss_pred CcEEEECcHHHHHHHHHHHHcCc----ccCCCCEEEE-ecchHHHHHHHHHHcCCeE------------EEEeeeeccc-
Confidence 35677777776777666655442 1123467776 5567888777777666211 11110 00
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 392 RNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 392 ~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
... -|+++++++|++++ +.+++|+..| ....++...+ +++|.++|++||+++++||+|-+.-.
T Consensus 197 ~~~-----------id~e~le~aI~e~ga~~i~~V~~Tt-t~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~ 260 (501)
T 3hl2_A 197 ELR-----------TDLKAVEAKVQELGPDCILCIHSTT-SCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSS 260 (501)
T ss_dssp EEE-----------ECHHHHHHHHHHHCGGGEEEEEEEC-SCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCH
T ss_pred ccC-----------CCHHHHHHHHHhcCCCcEEEEEecC-CCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhh
Confidence 000 26899999998874 6788888887 4443445455 99999999999999999999854321
Q ss_pred ccccccccccCC-CcceeeeccccCCCccccee-ee-e-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy8199 471 TGKFFACEHAEI-WPDFLCLSKGITGGYLPLSL-VM-T-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546 (965)
Q Consensus 471 ~G~~~~~~~~~~-~pDivt~sK~l~gG~~pig~-v~-~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~ 546 (965)
....+..+.+.. ..|+++.|-.-.+ +.|+|. ++ . ++++++.+.. .+-++.++.|.. ....+|..+-
T Consensus 261 ~~~~lp~sA~~~GrAD~vVqS~HK~l-lvpIGG~ii~~~d~e~l~~~~~-------~yPGr~S~Spsl--dl~~tLL~lG 330 (501)
T 3hl2_A 261 KCMHLIQQGARVGRIDAFVQSLDKNF-MVPVGGAIIAGFNDSFIQEISK-------MYPGRASASPSL--DVLITLLSLG 330 (501)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHH-CCCSSCEEEEESCHHHHHHHHH-------TSCSCBCSHHHH--HHHHHHHHHH
T ss_pred hhhhhHHHHHhcCCCcEEEecccccc-eeecCceEEEeCCHHHHHHHHH-------hCCCCCCCcHHH--HHHHHHHHHH
Confidence 111122222223 4899998842222 245554 33 2 5567766644 122333333332 2333333333
Q ss_pred c---ccHHHHHHHHHHHHHHHHHcccC-CC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE---Eee--
Q psy8199 547 K---DNILQRISQDMKKITKALTSLIT-HP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL---LRP-- 616 (965)
Q Consensus 547 ~---~~~~~~~~~~~~~l~~~L~~l~~-~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~---~~~-- 616 (965)
. .++.++..++.++|.++|++++. +. .+-..+..-.-+++.+. ............+...|+.++|- +.+
T Consensus 331 r~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~-~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~ 409 (501)
T 3hl2_A 331 SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLK-TLDEHRDKAVTQLGSMLFTRQVSGARVVPLG 409 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECT-TSCTTTSCHHHHHHHHHHHTTCCSCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecc-cccccccccHHHHHHHHHhcCCCcceeecCC
Confidence 2 34677777889999999998843 22 12233333344555553 11111112233566777777762 221
Q ss_pred ------------cC--------CEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 617 ------------IG--------NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 617 ------------~~--------~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
+| ..+-++....++.+|++.+++++.+++..+
T Consensus 410 ~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 410 SMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp CCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 468888888999999999999998876543
No 255
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=98.90 E-value=7.7e-08 Score=107.41 Aligned_cols=302 Identities=10% Similarity=0.051 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhhcCCCC-CeEEEcCChh-HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 298 PVIKLSEKLSSLTQYKL-GHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~-~~v~~~~sGs-eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
....+...+.+.++... ...++++++| .++..++.+++... .+.+.||+.. .-|-+..-++.+.|-..
T Consensus 99 ~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~-----~~~~~viv~r-~aHkSv~kAl~l~Gl~p---- 168 (450)
T 3bc8_A 99 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-----PKAKYIIWPR-IDQKSCFKSMVTAGFEP---- 168 (450)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-----TTCCEEEEEC-CCCHHHHHHHHHTTCEE----
T ss_pred HHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhh-----cCCCEEEEEC-CcHHHHHHHHHHcCCee----
Confidence 34456666666665332 3458888887 66666666666531 1245666664 48888777777666221
Q ss_pred hcccCCCeeEec-CC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 376 YTSLLNKTYIIT-TP-DSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 376 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.+++ .+ +.... -|+++|+++|++++ +.+++|+..| -+..+|.+.+ +++|.++|
T Consensus 169 --------~~v~~~~~~~~~~-----------id~~~le~aI~~~~~~~~~~Vv~t~-t~~g~g~~dd----l~~Ia~ia 224 (450)
T 3bc8_A 169 --------VVIENVLEGDELR-----------TDLKAVEAKIQELGPEHILCLHSTT-ACFAPRVPDR----LEELAVIC 224 (450)
T ss_dssp --------EEECCEEETTEEE-----------CCHHHHHHHHHHHCGGGEEEEEEES-SCCTTBCCCC----HHHHHHHH
T ss_pred --------EEEEeeecCccCC-----------cCHHHHHHHHHhcCCCCEEEEEEEC-CcCCCceecC----HHHHHHHH
Confidence 1111 11 00111 27899999998765 5688899988 4444556666 99999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeee-cHHHHHhhhccCCcccccccCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
++||+++++||+|-+.-+....+..+.+.. ..|.+++| |.+..- ..-+.+.. +++..+.+... ..++.
T Consensus 225 ~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~-------~~g~~ 296 (450)
T 3bc8_A 225 ANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM-------YPGRA 296 (450)
T ss_dssp HHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH-------SCSCB
T ss_pred HHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCch-hccEEEEecCHHHHHHHHHH-------hhcCC
Confidence 999999999999864322211111111211 47999887 433221 23344544 45555554331 11111
Q ss_pred CCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHccc---CCCceeeeeceeEEEEEEEeecCccchhhHHHH
Q psy8199 529 SGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLI---THPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~---~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~ 602 (965)
+.+| +.... .++..+-.+. .+++..++.+++++.|+++. ....+. ....+.-..+.+. .-.........+
T Consensus 297 s~Sp-sL~l~-~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~~~~~~l~-~~~~~~~~D~tk 372 (450)
T 3bc8_A 297 SASP-SLDVL-ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPISLAMTLK-TIDGHHDKAVTQ 372 (450)
T ss_dssp CSHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSSEEEEECT-TTSSSSSCHHHH
T ss_pred cccH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCCcceeecc-cccccccCCCce
Confidence 2233 22222 2222222222 33344667788888887774 221121 1111111222221 000000001223
Q ss_pred HHHHHHHcCc---EEe---------------------e-cCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 603 FFVAALKNEL---LLR---------------------P-IGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 603 ~~~~l~~~Gi---~~~---------------------~-~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.-.+...|+ -+. . ....+-+..+...++++++++++++.+..
T Consensus 373 l~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~ 440 (450)
T 3bc8_A 373 LGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCL 440 (450)
T ss_dssp HHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4444545552 111 0 12567788888999999999999887653
No 256
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=98.66 E-value=3.6e-07 Score=90.51 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=113.3
Q ss_pred CEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHH
Q psy8199 733 TRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYE 810 (965)
Q Consensus 733 ~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~ 810 (965)
..+.|+|| .|+.. .+.+.++++.+++.++.+++ ++|.++++.++.|.+. ++.+.+++++ +++.++++++. +++
T Consensus 5 ~~v~~tGG-EPll~--~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g~-~~~ 79 (182)
T 3can_A 5 GGVTFCGG-EPLLH--PEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCDV-PNE 79 (182)
T ss_dssp CCEEECSS-TGGGS--HHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHSS-CSH
T ss_pred CEEEEEcc-cccCC--HHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhCC-CHH
Confidence 45778775 46444 34456888888877777655 4677889999999998 8999999999 89999999864 469
Q ss_pred HHHHHHHHHHHcCCceeeeEEE--ecCCCHHHHHHHHHHHHhc-CCCC-CceeeccccccCCCC---------CCCCCCC
Q psy8199 811 NRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANL-NPYP-ESVPINNLVQIKGTP---------LYGSSIL 877 (965)
Q Consensus 811 ~~~~~i~~~~~~Gi~v~~~~i~--Gl~et~ed~~~~l~~l~~l-~~~~-~~i~~~~~~P~~gT~---------l~~~~~~ 877 (965)
..+++++.+.+.|+++...+++ |+.++.+++.+.++++.++ + + ..+.+.+|.|..... +.+.+++
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~ 157 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQ 157 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC------------------CCB
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcCcccCCCCC
Confidence 9999999999999877766554 3448899999999999999 7 7 788889999876543 3334555
Q ss_pred CHHH--HHHHHHHHHHH
Q psy8199 878 DPLE--FIRTIAVARIT 892 (965)
Q Consensus 878 ~~~~--~~~~ia~~R~~ 892 (965)
+.++ +.++...++..
T Consensus 158 ~~e~~~l~~~~~~~~~~ 174 (182)
T 3can_A 158 TPSEEVQQQCIQILTDY 174 (182)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 6666 77777777654
No 257
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=98.31 E-value=2.6e-05 Score=83.21 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
++.++.++.++.+.+.|++.+-+.++..+-...-+....+.++.+++. +..+..-. .+.+.++...++|++.+.+..
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~ag~~~v~i~~ 101 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAAGAKEVVIFG 101 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHCCCCEEEEEe
Confidence 789999999999999999999997764431001011223455555442 44443322 478999999999999999977
Q ss_pred CCCHHH-HhcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecC------CCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 794 DTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 794 es~~~~-~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
-+++.. .+++++. .+++...++++.+++.|+.+..++++-++ .+.+.+.+.++.+.+++ ++.|.+.
T Consensus 102 ~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~--- 176 (298)
T 2cw6_A 102 AASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG--CYEISLG--- 176 (298)
T ss_dssp ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTT--CSEEEEE---
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEec---
Confidence 666543 3444443 35678888899999999999888875442 47899999999999999 8877655
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch--hhHHHHhhcCccEEee-----CC-ccc--cCCC
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE--TTQAFCFLAGANSIFY-----GD-KLL--TTDN 934 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~~-----g~-~~~--t~~~ 934 (965)
.| ....+|.++.+++...|..+|+..+.+-+. +..+. .....|+.+||+.+-. |+ .+. .+++
T Consensus 177 ---DT----~G~~~P~~~~~lv~~l~~~~~~~~i~~H~H-n~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN 248 (298)
T 2cw6_A 177 ---DT----IGVGTPGIMKDMLSAVMQEVPLAALAVHCH-DTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGN 248 (298)
T ss_dssp ---ET----TSCCCHHHHHHHHHHHHHHSCGGGEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCB
T ss_pred ---CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEEC-CCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCC
Confidence 44 244689999999999999998655555432 22222 2335688999995422 22 010 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++...+++..|+.+.
T Consensus 249 ~~~E~lv~~l~~~g~~~~ 266 (298)
T 2cw6_A 249 LATEDLVYMLEGLGIHTG 266 (298)
T ss_dssp CBHHHHHHHHHHHTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 456788999999998753
No 258
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.25 E-value=4.3e-05 Score=83.75 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=151.5
Q ss_pred HHHHHHH-HHHhhcCCCCC----eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc-----cCCccc--ccc
Q psy8199 298 PVIKLSE-KLSSLTQYKLG----HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSY-----HGETLG--ALA 365 (965)
Q Consensus 298 ~~~~la~-~l~~~~~~~~~----~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~y-----Hg~~~~--~~~ 365 (965)
..+.||. +..++++.... .|. --||+.||.+++....+ ++++|+.++-.- ||+... ..+
T Consensus 100 ~iE~la~~rak~lF~a~~A~w~VNVQ-P~SGs~AN~avy~All~--------PGD~ilg~~l~~GGHltHg~~~~~~~v~ 170 (490)
T 3ou5_A 100 EIELLCQRRALEAFDLDPAQWGVNVQ-PYSGSPANLAVYTALLQ--------PHDRIMGLDLPDGGHLTHGYMSDVKRIS 170 (490)
T ss_dssp HHHHHHHHHHHHHTTCCTTTEEEECC-CSSHHHHHHHHHHHHCC---------CCCEECBC-------------------
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCC-cCCHHHHHHHHHHHHcC--------CCCEEEecccCCCCcccccccCCCcccc
Confidence 3455555 44567765444 233 46899999999887754 678888887532 222110 111
Q ss_pred ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHH
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYL 445 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l 445 (965)
.++. . ...++++-+ .+ -...|.+++++...++.+ ..||+-. +..--..+ +
T Consensus 171 ~sg~----------~--~~~~~Y~vd--------~~-t~~IDyd~~~~~A~~~kP--klIi~G~---SaY~r~id----~ 220 (490)
T 3ou5_A 171 ATSI----------F--FESMPYKLN--------PK-TGLIDYNQLALTARLFRP--RLIIAGT---SAYARLID----Y 220 (490)
T ss_dssp ---------------------CBCEE--------TT-TTEECHHHHHHHHHHHCC--SEEEECC---SSCCSCCC----H
T ss_pred cccc----------c--ccccccccC--------CC-CCcccHHHHHHHHhhcCC--CeEEECC---ccCccccC----H
Confidence 1110 0 011111100 00 001367888877766544 4466633 22222233 8
Q ss_pred HHHHHHHHhcCCeEEEecccc-CCCcccc-cccccccCCCcceeeec--cccCCCcccceeeeecH--------------
Q psy8199 446 KLVREICNNYNIHLIADEIAV-GCGRTGK-FFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTD-------------- 507 (965)
Q Consensus 446 ~~l~~l~~~~g~llI~DEv~t-g~gr~G~-~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~-------------- 507 (965)
++++++|++.|++|++|=+|. |+--.|. ...+. ..|+||.+ |.|.| -+-|.+++++
T Consensus 221 ~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~ 294 (490)
T 3ou5_A 221 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIP 294 (490)
T ss_dssp HHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEE
T ss_pred HHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccccC--CCceEEEeccccccccccccchhH
Confidence 999999999999999998875 2211111 11222 26899776 77777 2556666665
Q ss_pred -HHHHhhhccCCcccccccCCCCCCHHHHHHHHH-HHHH-Hhc--ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--e
Q psy8199 508 -KIYNSIYYKNNINIFLHSHSYSGNPLACCAALA-TLEI-FNK--DNILQRISQDMKKITKALTSLITHPKIINFRQ--K 580 (965)
Q Consensus 508 -~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a-~L~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~ 580 (965)
++.+.+.. ..+-+..+|+-.-..||.+ ++.. +.. .+..+++.++.+.|.+.|.+. ++..+.| .
T Consensus 295 ~~~~kkin~------aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~----G~~vvsGgTd 364 (490)
T 3ou5_A 295 YTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER----GYSLVSGGTD 364 (490)
T ss_dssp CCCHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCS
T ss_pred HHHHHHHHh------hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCCC
Confidence 23333332 1112333343333333332 2432 221 346778888888898888764 4443333 2
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec------CCEEEEeCCcc----cCHHHHHHHHHhhhccc
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI------GNTVYLMPPYI----LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~------~~~lR~~p~~~----~t~~~i~~~~~~l~~~~ 645 (965)
..++.+++. .. .-......+.|.+.||.+. |+ ...|||-.|.. +.++++.++.+-+.+++
T Consensus 365 nHlvLvDl~-~~----g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 365 NHLVLVDLR-PK----GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp SSEEEEECG-GG----TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEecc-cc----CCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 336666664 11 1113345577888999885 22 14689986654 56788877776665544
No 259
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=98.17 E-value=0.00021 Score=76.01 Aligned_cols=225 Identities=11% Similarity=0.066 Sum_probs=152.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.++.++.++.++.+.+.|++.|-+.++..+-....+....+.++.+++ .+..+..-. .+.+.++...++|++.+.+.
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~~g~~~v~i~ 101 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALV--PNQRGLENALEGGINEACVF 101 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEEC--CSHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEEEEe--CCHHhHHHHHhCCcCEEEEE
Confidence 388999999999999999999999775443110101122234454443 345554332 36889999999999999998
Q ss_pred CCCCHHH-HhcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecC------CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 793 LDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 793 ~es~~~~-~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.-+++-. .+++++. ...+...++++.+++.|+.+..++++-++ .+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 102 ~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~-- 177 (307)
T 1ydo_A 102 MSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG--ISELSLG-- 177 (307)
T ss_dssp EESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT--CSCEEEE--
T ss_pred eecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEEc--
Confidence 7666543 2334332 23566788899999999999877776553 46899999999999999 7877654
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEee-----CCccc---cCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIFY-----GDKLL---TTDN 934 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~-----g~~~~---t~~~ 934 (965)
.| ....+|.++.+++...|..+|+..+.+-+.=. .+.......|+.+||+.+=. |+-.. .+++
T Consensus 178 ----DT----~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN 249 (307)
T 1ydo_A 178 ----DT----IGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGN 249 (307)
T ss_dssp ----CS----SCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECB
T ss_pred ----CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCC
Confidence 45 23468999999999999888865554444221 22223345688999995421 22000 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++...+|+..|+.+.
T Consensus 250 ~~~E~lv~~L~~~g~~t~ 267 (307)
T 1ydo_A 250 AATEDIVYMLEQMDIKTN 267 (307)
T ss_dssp CBHHHHHHHHHHTTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 567889999999998753
No 260
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=98.16 E-value=0.00013 Score=77.76 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=151.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
++.++.++.++.+.+.|+..+.+.+...+-....+....+.++.+++. ++.+.... .+.+.+++..++|++.+.+.+
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~i~~ 100 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIAVFI 100 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEEEEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEEEEE
Confidence 889999999999999999999987653321001112344666666553 66665544 578999999999999999987
Q ss_pred CCCHHHHhc-ccCC--CCHHHHHHHHHHHHHcCCceeeeEE--EecC----CCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 794 DTSPKLYGD-IIST--RDYENRLNTLKNVRNVGINICCGGI--IGLS----ESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 794 es~~~~~~~-i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~----et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
-+|+...+. ++.+ .+.+...++++.+++.|+.+...+. +|.+ .+.+++.+.++.+.+.+ ++.+.+.
T Consensus 101 ~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~--- 175 (295)
T 1ydn_A 101 SASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG--CHEVSLG--- 175 (295)
T ss_dssp ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT--CSEEEEE---
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEec---
Confidence 566544332 2222 2455667778999999999885555 4432 57899999999999999 8887766
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc--cccccchhhHHHHhhcCccEEeeC-----Cc-cc--cCCC
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA--GRKEMGETTQAFCFLAGANSIFYG-----DK-LL--TTDN 934 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~--~~~~~~~~~~~~~l~~Gan~~~~g-----~~-~~--t~~~ 934 (965)
.| ....+|.++.+++...|..+|...+.+-+ ... +.......|+.+||+.+-.. +- +. .+++
T Consensus 176 ---Dt----~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~G-la~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN 247 (295)
T 1ydn_A 176 ---DT----IGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGG-RALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGN 247 (295)
T ss_dssp ---ET----TSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTS-CHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCB
T ss_pred ---CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcc-hHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCC
Confidence 22 22368899999999999888754344433 221 22333457889999964322 11 11 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++.+.+++..|+.+.
T Consensus 248 ~~~e~lv~~l~~~g~~~~ 265 (295)
T 1ydn_A 248 VDTVAVVEMLHEMGFETG 265 (295)
T ss_dssp CBHHHHHHHHHHTTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 467888999999998753
No 261
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.06 E-value=5e-06 Score=89.53 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=97.5
Q ss_pred eEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHH-HHHCCCC--EEEEeeccCCCCcccHHHHHH----HH
Q psy8199 684 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQK-AKSDGAT--RFCMGAAWRELKDRDLDNIEN----MI 756 (965)
Q Consensus 684 ~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~-~~~~g~~--~i~l~~g~~~~~~~~~~~~~~----~~ 756 (965)
.++. ..||+++|.||.....++....-.-..+.+++++.+.. +.+.+.+ .|.+.+..++ .++|.... ++
T Consensus 110 ~ln~-y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDp---yp~E~~~~ltr~~l 185 (368)
T 4fhd_A 110 AIPL-ATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDI---VGIDHLTHSLKKAI 185 (368)
T ss_dssp ECCS-EEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCH---HHHHTTTCHHHHHH
T ss_pred eeCC-ccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCc---chhhHHHhHHHHHH
Confidence 3566 79999999999755443321101113678999998765 3333433 3444333333 24454433 33
Q ss_pred HHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC-CCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 757 CEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 757 ~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
+.+.+. +..+.+......-+.+..|...|...+.+++.+ +++.+.+-+ .-+.+.++++++.+.++|++++..+.-=+
T Consensus 186 e~l~~~~~~~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~iaPIi 264 (368)
T 4fhd_A 186 EFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIY 264 (368)
T ss_dssp HHHHHCSSEEEEEEESCCCCGGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred HHHHhCCCceEEEEeCCcCHHHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEEEeCcC
Confidence 444443 434444222222234444545555566666644 677777765 45799999999999999999987766555
Q ss_pred -CCCH-HHHHHHHHHHHh
Q psy8199 835 -SESR-DQRAELIFQLAN 850 (965)
Q Consensus 835 -~et~-ed~~~~l~~l~~ 850 (965)
++++ ++..+.++.+.+
T Consensus 265 P~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 265 RHEGWERGYFELFQELAR 282 (368)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 3544 678888887766
No 262
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=98.06 E-value=0.00025 Score=75.62 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.++.++.++.++.+.+.|+..|...++..+-....+....+.++.+.+ .+..+.... .+.+.+++..++|++.+.+.
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v~i~ 103 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEVAVF 103 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEEEEE
Confidence 378999999999999999999998765433111111222344555543 455665544 48999999999999999987
Q ss_pred CCCCHHH-HhcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecC------CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 793 LDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 793 ~es~~~~-~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.-+++-. .++++.+ .+.+...+.++.+++.|+.+...+.+-.+ .+.+.+.+.++.+.+.+ ++.+.+.
T Consensus 104 ~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~-- 179 (302)
T 2ftp_A 104 AAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG--CYEVSLG-- 179 (302)
T ss_dssp EESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT--CSEEEEE--
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEEe--
Confidence 6555533 2344332 25567788889999999998766665433 46789999999999999 8877655
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEee-----CCccc---cCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIFY-----GDKLL---TTDN 934 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~-----g~~~~---t~~~ 934 (965)
.| .....|.++.+++...|..+|+..+.+-+.=. .+.......|+.+||+.+=. |+-.. .+++
T Consensus 180 ----DT----~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN 251 (302)
T 2ftp_A 180 ----DT----IGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGN 251 (302)
T ss_dssp ----ES----SSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCB
T ss_pred ----CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCC
Confidence 33 12357899999999998888755454444211 22334456789999995432 22000 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++...+|+..|+.+.
T Consensus 252 ~~~E~lv~~l~~~g~~~~ 269 (302)
T 2ftp_A 252 VASEDVLYLLNGLEIHTG 269 (302)
T ss_dssp CBHHHHHHHHHHTTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 567889999999998753
No 263
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=97.95 E-value=0.00045 Score=74.71 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=148.8
Q ss_pred CCHHHHHHHHH-HHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH---h-cCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQ-KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK---K-IGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~-~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~---~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
++.++.++.++ .+.+.|++.+-+.++... ..+++.+..+.+... . .+..+..-.- ....++...++|++.+
T Consensus 38 ~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~--~~~~i~~a~~~g~~~v 113 (337)
T 3ble_A 38 FSTSEKLNIAKFLLQKLNVDRVEIASARVS--KGELETVQKIMEWAATEQLTERIEILGFVD--GNKTVDWIKDSGAKVL 113 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEETTSC--TTHHHHHHHHHHHHHHTTCGGGEEEEEESS--TTHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCC--hhHHHHHHHHHhhhhhhccCCCCeEEEEcc--chhhHHHHHHCCCCEE
Confidence 78999999999 999999999998665432 233444444333211 1 2333332211 2238999999999999
Q ss_pred eccCCCCHHHH-hcccCC--CCHHHHHHHHHHHHHcCCceeeeEEE---ecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 790 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGII---GLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~---Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.+..-+++... +.++.. ...+...++++.+++.|+.+..++.. +...+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 114 ~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~-- 189 (337)
T 3ble_A 114 NLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEH--IERIFLP-- 189 (337)
T ss_dssp EEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSC--CSEEEEE--
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcC--CCEEEEe--
Confidence 99877765433 344432 24667778889999999998877665 43367888999999999999 7777654
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc--hhhHHHHhhcCccEEe---e--CCccccCCCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTK 936 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~--~~~~~~~l~~Gan~~~---~--g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+..+.+-+.= +.+ ......|+.+||+.+- . |+ .+++..
T Consensus 190 ----DT----~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hn-d~GlA~AN~laAv~aGa~~vd~tv~GlG~---~aGN~~ 257 (337)
T 3ble_A 190 ----DT----LGVLSPEETFQGVDSLIQKYPDIHFEFHGHN-DYDLSVANSLQAIRAGVKGLHASINGLGE---RAGNTP 257 (337)
T ss_dssp ----CT----TCCCCHHHHHHHHHHHHHHCTTSCEEEECBC-TTSCHHHHHHHHHHTTCSEEEEBGGGCSS---TTCBCB
T ss_pred ----cC----CCCcCHHHHHHHHHHHHHhcCCCeEEEEecC-CcchHHHHHHHHHHhCCCEEEEecccccc---cccchh
Confidence 44 2446899999999999999986655554432 222 2334568899999543 2 23 455567
Q ss_pred ChhhHHHHHHc-CCCc
Q psy8199 937 TNDDSKLLKKL-GINT 951 (965)
Q Consensus 937 ~~~~~~~~~~~-g~~~ 951 (965)
.++...+|+.. |+.+
T Consensus 258 ~E~lv~~L~~~~g~~t 273 (337)
T 3ble_A 258 LEALVTTIHDKSNSKT 273 (337)
T ss_dssp HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 88999999888 8765
No 264
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=97.57 E-value=0.0022 Score=69.75 Aligned_cols=216 Identities=9% Similarity=0.046 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe-----eccCCCCcccHHHHHHHHHHHHh--cCcEeEE--ecCCCCHHHHHHHHHhC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMG-----AAWRELKDRDLDNIENMICEVKK--IGLETCL--TLGMLNENQAYRLKKVG 785 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~-----~g~~~~~~~~~~~~~~~~~~i~~--~~~~i~~--~~~~~~~e~l~~Lk~aG 785 (965)
++.++.++.++.+.+.|++.+-+. .+..+........-.+.++.+++ .+..+.. ..+.-.++.+++..++|
T Consensus 27 ~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aG 106 (345)
T 1nvm_A 27 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG 106 (345)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCC
Confidence 889999999999999999999995 11111000001122334555544 2444432 33455789999999999
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
++.+.+..-.++ .+...+.++.+++.|+.+...+.-...-+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 107 vd~v~I~~~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~G--a~~i~l~---- 169 (345)
T 1nvm_A 107 ARVVRVATHCTE-----------ADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYMA---- 169 (345)
T ss_dssp CCEEEEEEETTC-----------GGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEEE----
T ss_pred cCEEEEEEeccH-----------HHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCC--CCEEEEC----
Confidence 999988642232 14567888899999998877765555678899999999999998 7766654
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccc--hhhHHHHhhcCccEE---eeCCccccCCCCCChh
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMG--ETTQAFCFLAGANSI---FYGDKLLTTDNTKTND 939 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~--~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~ 939 (965)
+| ....+|.++.+++...|..+| +..+.+-++ ++.| ......|+.+||+.+ +.|-.- .+++.+.++
T Consensus 170 --DT----~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~H-n~~G~avAn~laA~~aGa~~vd~tv~GlG~-~aGN~~le~ 241 (345)
T 1nvm_A 170 --DS----GGAMSMNDIRDRMRAFKAVLKPETQVGMHAH-HNLSLGVANSIVAVEEGCDRVDASLAGMGA-GAGNAPLEV 241 (345)
T ss_dssp --CT----TCCCCHHHHHHHHHHHHHHSCTTSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-TTCBCBHHH
T ss_pred --CC----cCccCHHHHHHHHHHHHHhcCCCceEEEEEC-CCccHHHHHHHHHHHcCCCEEEecchhccC-CccCcCHHH
Confidence 55 133468999999999999996 554544432 2222 233456889999843 222211 455567889
Q ss_pred hHHHHHHcCCCcchhh
Q psy8199 940 DSKLLKKLGINTRNIK 955 (965)
Q Consensus 940 ~~~~~~~~g~~~~~~~ 955 (965)
...+|+..|+.+.-..
T Consensus 242 lv~~L~~~g~~~~idl 257 (345)
T 1nvm_A 242 FIAVAERLGWNHGTDL 257 (345)
T ss_dssp HHHHHHHHTCBCCSCH
T ss_pred HHHHHHhcCCCCCCCH
Confidence 9999999998864333
No 265
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=97.50 E-value=0.0054 Score=66.77 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH----hCCCeE
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK----VGLDYY 789 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~----aG~~~i 789 (965)
.++.++-++.++.+.+.|++.+-..... ....+.+.+..+.+.+ .+..++.-. ..+.+.++.-.+ +|++.+
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~--~~~~d~e~v~~i~~~~--~~~~i~~l~-r~~~~di~~a~~al~~ag~~~v 104 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFAA--ASPGDFEAVNAIAKTI--TKSTVCSLS-RAIERDIRQAGEAVAPAPKKRI 104 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEGG--GCHHHHHHHHHHHTTC--SSSEEEEEE-ESSHHHHHHHHHHHTTSSSEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHHhC--CCCeEEEEe-cCCHHHHHHHHHHHhhCCCCEE
Confidence 3899999999999999999998875432 1123344444333222 234443211 124555555444 899999
Q ss_pred eccCCCCHHHH-hcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
.+..-+++-.. +++++. ...+...++++.+++.|..+..+...+.-.+.+.+.+.++.+.+.+ .+.|.+.
T Consensus 105 ~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~G--a~~i~l~----- 177 (370)
T 3rmj_A 105 HTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAG--ATTINIP----- 177 (370)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHT--CCEEEEE-----
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcC--CCEEEec-----
Confidence 98877765433 344432 2345566678889999998766666555588899999999999999 7776544
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC---Cceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCC
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTK 936 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~---~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+ ..+.+-+. ++.+. .....|+.+||+.+= .|+ .+++.+
T Consensus 178 -DT----~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~H-nd~GlAvAN~laAv~aGa~~vd~tv~GlGe---raGN~~ 248 (370)
T 3rmj_A 178 -DT----VGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCH-NDLGLAVANSLAALKGGARQVECTVNGLGE---RAGNAS 248 (370)
T ss_dssp -CS----SSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCB
T ss_pred -Cc----cCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeC-CCCChHHHHHHHHHHhCCCEEEEeccccCc---cccccc
Confidence 55 2456889999999999999986 44444432 23222 334568899999532 233 455566
Q ss_pred ChhhHHHHHH----cCCCcc
Q psy8199 937 TNDDSKLLKK----LGINTR 952 (965)
Q Consensus 937 ~~~~~~~~~~----~g~~~~ 952 (965)
.++...+|+. +|+.+.
T Consensus 249 lE~vv~~L~~~~~~~g~~tg 268 (370)
T 3rmj_A 249 VEEIVMALKVRHDLFGLETG 268 (370)
T ss_dssp HHHHHHHHHHTHHHHCCBCC
T ss_pred HHHHHHHHHhhhhccCCCCC
Confidence 7888888863 587753
No 266
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=97.49 E-value=0.0075 Score=63.59 Aligned_cols=228 Identities=13% Similarity=0.039 Sum_probs=143.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHH----HHhCCCeE
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRL----KKVGLDYY 789 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~L----k~aG~~~i 789 (965)
.++.++.++.++.+.+.|++.|-+.+... ...+.+.+..+.+.. .+..+..-.- -.++.++.. +++|++.+
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~--~~~d~e~v~~i~~~~--~~~~i~~l~~-~~~~di~~a~~~~~~ag~~~v 97 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPIS--SPGDFECVKAIAKAI--KHCSVTGLAR-CVEGDIDRAEEALKDAVSPQI 97 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGGG--CHHHHHHHHHHHHHC--CSSEEEEEEE-SSHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC--CccHHHHHHHHHHhc--CCCEEEEEec-CCHHHHHHHHHHHhhcCCCEE
Confidence 38899999999999999999998854321 112334433333222 3444432111 123444444 44799999
Q ss_pred eccCCCCHHHH-hcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
.+.+-+|+-.. .++++. ...+...+.++.+++.|+.+..+...+...+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 98 ~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l~----- 170 (293)
T 3ewb_X 98 HIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAG--ATVINIP----- 170 (293)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--CCEEEEE-----
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcC--CCEEEec-----
Confidence 98876665432 333332 2455667778889999998876665544478888999999999999 7777654
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---ceeccccccccc--hhhHHHHhhcCccEEe-----eCCccccCCCCC
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTS---RIRMSAGRKEMG--ETTQAFCFLAGANSIF-----YGDKLLTTDNTK 936 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~---~i~i~~~~~~~~--~~~~~~~l~~Gan~~~-----~g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+. .+.+-+. ++.+ ......|+.+||+.+= .|+ .+++..
T Consensus 171 -DT----~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~H-nd~Gla~AN~laA~~aGa~~vd~sv~GlGe---raGN~~ 241 (293)
T 3ewb_X 171 -DT----VGYTNPTEFGQLFQDLRREIKQFDDIIFASHCH-DDLGMATANALAAIENGARRVEGTINGIGE---RAGNTA 241 (293)
T ss_dssp -CS----SSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCCT---TTCBCB
T ss_pred -CC----CCCCCHHHHHHHHHHHHHhcCCccCceEEEEeC-CCcChHHHHHHHHHHhCCCEEEeecccccc---ccccHh
Confidence 55 24468899999999999999853 2333322 2222 2334568899999532 223 445556
Q ss_pred ChhhHHHHHH----cCCCc---chhhhHHhhhh
Q psy8199 937 TNDDSKLLKK----LGINT---RNIKIKMKNNI 962 (965)
Q Consensus 937 ~~~~~~~~~~----~g~~~---~~~~~~~~~~~ 962 (965)
.++...+|+. +|+.+ .....+++..+
T Consensus 242 ~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v 274 (293)
T 3ewb_X 242 LEEVAVALHIRKDFYQAETNIVLNQFKNSSDLI 274 (293)
T ss_dssp HHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHH
Confidence 7888888875 68764 33344444433
No 267
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=97.42 E-value=0.0027 Score=68.02 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHh----CCCeE
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV----GLDYY 789 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~a----G~~~i 789 (965)
.++.++.++.++.+.+.|++.|-+... .....+.+.+.++.+.+ .+..+..- ...+++.+++-.++ |++.+
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p--~~~~~d~e~v~~i~~~~--~~~~i~~l-~r~~~~~i~~a~~al~~ag~~~v 98 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGFP--VSSPGDFNSVVEITKAV--TRPTICAL-TRAKEADINIAGEALRFAKRSRI 98 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEECT--TSCHHHHHHHHHHHHHC--CSSEEEEE-CCSCHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCHhHHHHHHHHHHhC--CCCEEEEe-ecCCHHHHHHHHHhhcccCCCEE
Confidence 378999999999999999999888532 11222333333332222 34444332 22346666665666 99999
Q ss_pred eccCCCCHHHH-hcccC--CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 NHNLDTSPKLY-GDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
.+..-+++-.. +++++ ..+.+...++++.+++.|+.+..+...+...+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 99 ~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l~----- 171 (325)
T 3eeg_A 99 HTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAG--ADVVNIP----- 171 (325)
T ss_dssp EEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHT--CSEEECC-----
T ss_pred EEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcC--CCEEEec-----
Confidence 98866665433 33433 34677888999999999998876666555578888999999999999 7766543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC---Cceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCC
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTK 936 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~---~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+ ..+.+-+. ++.+. .....|+.+||+.+= .|+ .+++.+
T Consensus 172 -DT----~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~H-nd~GlA~AN~laA~~aGa~~vd~tv~GlGe---r~GN~~ 242 (325)
T 3eeg_A 172 -DT----TGYMLPWQYGERIKYLMDNVSNIDKAILSAHCH-NDLGLATANSLAALQNGARQVECTINGIGE---RAGNTA 242 (325)
T ss_dssp -BS----SSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBC-CTTSCHHHHHHHHHHHTCCEEEEBGGGCCS---TTCCCB
T ss_pred -Cc----cCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeC-CCCCHHHHHHHHHHHhCCCEEEEecccccc---cccchh
Confidence 55 2446889999999999999986 44444432 23222 334568899999542 223 445556
Q ss_pred ChhhHHHHHH----cCCCc
Q psy8199 937 TNDDSKLLKK----LGINT 951 (965)
Q Consensus 937 ~~~~~~~~~~----~g~~~ 951 (965)
.++.+.+|+. +|+.+
T Consensus 243 lE~vv~~L~~~~~~~g~~t 261 (325)
T 3eeg_A 243 LEEVVMAMECHKETLGLET 261 (325)
T ss_dssp HHHHHHHHHHTHHHHCEEC
T ss_pred HHHHHHHHHhhhhccCCCC
Confidence 7888888884 67764
No 268
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=97.26 E-value=0.0042 Score=70.54 Aligned_cols=212 Identities=15% Similarity=0.172 Sum_probs=142.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC------CCCcccHHHHHHHHHHHHhcCcEeEEe----cCC------CCHHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----LGM------LNENQA 778 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~------~~~~~~~~~~~~~~~~i~~~~~~i~~~----~~~------~~~e~l 778 (965)
++.++.++.++.+.+.|++.+-..++.. -....+.+.+..+.+.++...+...+. .|. +.+..+
T Consensus 44 ~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~v 123 (539)
T 1rqb_A 44 MAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFV 123 (539)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHH
Confidence 7899999999999999999999977532 011223333333332222233333332 122 246778
Q ss_pred HHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--EEecCCCHHHHHHHHHHHHhcCCCCC
Q psy8199 779 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 779 ~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Gl~et~ed~~~~l~~l~~l~~~~~ 856 (965)
+...++|++.+.+..-+++- +...++++.+++.|..+...+ ..|...+.+.+.+.++.+.+.+ ++
T Consensus 124 e~a~~aGvd~vrIf~s~sd~-----------~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--ad 190 (539)
T 1rqb_A 124 DKSAENGMDVFRVFDAMNDP-----------RNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--AD 190 (539)
T ss_dssp HHHHHTTCCEEEECCTTCCT-----------HHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhCCCCEEEEEEehhHH-----------HHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcC--CC
Confidence 99999999999887544432 456889999999999886555 4455688999999999999999 77
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccch--hhHHHHhhcCccEEe---eCCccc
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGE--TTQAFCFLAGANSIF---YGDKLL 930 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~---~g~~~~ 930 (965)
.|.+. .| .....|.++.+++...|..+| +..+.+-+.= +.|. .....|+.+||+.+= .|-. -
T Consensus 191 ~I~L~------DT----~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hn-d~GlAvAN~laAveAGa~~VD~ti~g~G-e 258 (539)
T 1rqb_A 191 SIALK------DM----AALLKPQPAYDIIKAIKDTYGQKTQINLHCHS-TTGVTEVSLMKAIEAGVDVVDTAISSMS-L 258 (539)
T ss_dssp EEEEE------ET----TCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBC-TTSCHHHHHHHHHHTTCSEEEEBCGGGC-S
T ss_pred EEEeC------CC----CCCcCHHHHHHHHHHHHHhcCCCceEEEEeCC-CCChHHHHHHHHHHhCCCEEEEeccccC-C
Confidence 76554 44 234678999999999998887 5555554432 2222 334568899999532 2211 1
Q ss_pred cCCCCCChhhHHHHHHcCCCc
Q psy8199 931 TTDNTKTNDDSKLLKKLGINT 951 (965)
Q Consensus 931 t~~~~~~~~~~~~~~~~g~~~ 951 (965)
.+++.+.++.+.+|+..|+.+
T Consensus 259 rtGN~~lE~lv~~L~~~g~~t 279 (539)
T 1rqb_A 259 GPGHNPTESVAEMLEGTGYTT 279 (539)
T ss_dssp TTSBCBHHHHHHHTTTSSEEC
T ss_pred CccChhHHHHHHHHHhcCCCc
Confidence 455557788888998888765
No 269
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=97.19 E-value=0.014 Score=65.40 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=141.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC------CCCcccHHHHHHHHHHHHhcCcEeEEe----cCCC------CHHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----LGML------NENQA 778 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~------~~~~~~~~~~~~~~~~i~~~~~~i~~~----~~~~------~~e~l 778 (965)
++.++.++.++.+.+.|+..+-..++.. -....+.+.+..+.+.++...+...++ .|.. .+..+
T Consensus 27 ~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v 106 (464)
T 2nx9_A 27 LRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFV 106 (464)
T ss_dssp CCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHH
Confidence 7789999999999999999999976531 011223333333322222223333332 1322 25678
Q ss_pred HHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--EEecCCCHHHHHHHHHHHHhcCCCCC
Q psy8199 779 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 779 ~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Gl~et~ed~~~~l~~l~~l~~~~~ 856 (965)
+...++|++.+.+..-+++- +...++++.+++.|..+...+ ..|...+.+.+.+.++.+.+.+ ++
T Consensus 107 ~~a~~~Gvd~i~if~~~sd~-----------~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--ad 173 (464)
T 2nx9_A 107 ERAVKNGMDVFRVFDAMNDV-----------RNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG--VD 173 (464)
T ss_dssp HHHHHTTCCEEEECCTTCCT-----------HHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhCCcCEEEEEEecCHH-----------HHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC--CC
Confidence 89999999999887544332 456789999999999886555 4455688999999999999999 78
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch--hhHHHHhhcCccEEee--CCccccC
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE--TTQAFCFLAGANSIFY--GDKLLTT 932 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~~--g~~~~t~ 932 (965)
.|.+. .| .....|.++.+++...|..+ +..+.+-+.= +.|. .....|+.+||+.+=. +..--.+
T Consensus 174 ~I~l~------DT----~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hn-d~GlAvAN~laAv~AGa~~VD~ti~g~gert 241 (464)
T 2nx9_A 174 SIALK------DM----AGILTPYAAEELVSTLKKQV-DVELHLHCHS-TAGLADMTLLKAIEAGVDRVDTAISSMSGTY 241 (464)
T ss_dssp EEEEE------ET----TSCCCHHHHHHHHHHHHHHC-CSCEEEEECC-TTSCHHHHHHHHHHTTCSEEEEBCGGGCSTT
T ss_pred EEEEc------CC----CCCcCHHHHHHHHHHHHHhc-CCeEEEEECC-CCChHHHHHHHHHHhCCCEEEEeccccCCCC
Confidence 77654 34 23467899999999998877 3445444432 2222 3345688999995421 1111145
Q ss_pred CCCCChhhHHHHHHcCCCcc
Q psy8199 933 DNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 933 ~~~~~~~~~~~~~~~g~~~~ 952 (965)
++.+.++.+.+|+..|+.+.
T Consensus 242 GN~~lE~lv~~L~~~g~~tg 261 (464)
T 2nx9_A 242 GHPATESLVATLQGTGYDTG 261 (464)
T ss_dssp SCCBHHHHHHHHTTSTTCCC
T ss_pred cCHHHHHHHHHHHhcCCCcc
Confidence 55678889999999888764
No 270
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=96.99 E-value=0.029 Score=66.11 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccC------CCCcccHHHHHHHHHHHHhcCcEeEEec----CC------CCHH
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLTL----GM------LNEN 776 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~------~~~~~~~~~~~~~~~~i~~~~~~i~~~~----~~------~~~e 776 (965)
++.++.++.++.+.+. |+..+-..||.. -....+++++.++.+.+++..+...++. |. ...+
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~ 201 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFK 201 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHH
Confidence 7899999999999887 577787764432 1223445666665555544333333322 11 1367
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe---c-C----CCHHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---L-S----ESRDQRAELIFQL 848 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G---l-~----et~ed~~~~l~~l 848 (965)
.++...++|++.+.+..-.+ ..+....+++.+++.|..+...+.+. . + .+.+.+.+.++.+
T Consensus 202 ~i~~a~~~Gvd~irIf~s~n-----------~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l 270 (718)
T 3bg3_A 202 FCEVAKENGMDVFRVFDSLN-----------YLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEEL 270 (718)
T ss_dssp HHHHHHHHTCCEEEEECSSC-----------CHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCcCEEEEEecHH-----------HHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHH
Confidence 88999999999988774222 25677888999999998877766666 1 1 2789999999999
Q ss_pred HhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEe---
Q psy8199 849 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIF--- 924 (965)
Q Consensus 849 ~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~--- 924 (965)
.+.+ ++.|.+. .| ..-..|.++.+++...|..+|+..+.+-++=. .+.......|+.+||+.+=
T Consensus 271 ~~~G--a~~I~l~------DT----~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti 338 (718)
T 3bg3_A 271 VRAG--THILCIK------DM----AGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAA 338 (718)
T ss_dssp HHHT--CSEEEEE------CT----TSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred HHcC--CCEEEEc------Cc----CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEecC
Confidence 9999 7776654 44 24568899999999999999876666665432 2223334568899999542
Q ss_pred eCCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 925 YGDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 925 ~g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
.|-. -.+++.+.++.+.+|+..|+.+.
T Consensus 339 ~GlG-ertGN~~lE~vv~~L~~~g~~tg 365 (718)
T 3bg3_A 339 DSMS-GMTSQPSMGALVACTRGTPLDTE 365 (718)
T ss_dssp GGGC-STTSCCBHHHHHHHHTTSTTCCC
T ss_pred cccc-cccCchhHHHHHHHHHhcCCCcc
Confidence 2111 14555678899999999888753
No 271
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=96.97 E-value=0.023 Score=62.50 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcC--cEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
.++.++-++.++.+.+.|++.|-+.. |-. . +.-.+.++.+.+.+ ..+.. ....+.+.++...++|++.+.+
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~a--s-p~d~~~~~~i~~~~~~~~v~~-~~r~~~~di~~A~~aG~~~V~i 129 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS---PVA--S-EQSRQDCEAICKLGLKCKILT-HIRCHMDDARVAVETGVDGVDV 129 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTS--C-HHHHHHHHHHHTSCCSSEEEE-EEESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee---ccc--C-HHHHHHHHHHHhcCCCCEEEE-eeccChhhHHHHHHcCCCEEEE
Confidence 48999999999999999999999843 211 1 22334555555533 33322 2234678899999999999999
Q ss_pred cCCCCHHHHh-cccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 792 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 792 ~~es~~~~~~-~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
.+-+|+-..+ .+++. ...+...++++.+++.|+.+..+..-+...+.+.+.+.++.+.+.+ ++.|.+. .
T Consensus 130 ~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~G--a~~i~l~------D 201 (423)
T 3ivs_A 130 VIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIG--VNRVGIA------D 201 (423)
T ss_dssp EEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHC--CSEEEEE------E
T ss_pred EeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhC--CCccccC------C
Confidence 8877643322 22222 2356777899999999999887776666678899999999999999 7766543 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCCChhhH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTKTNDDS 941 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~~~~~~ 941 (965)
|- ...+|.++.+++...|...+ ..+.+-+. ++.+. .....|+.+||+.+= .|+ .+++.+.++..
T Consensus 202 Tv----G~~~P~~v~~lv~~l~~~~~-~~i~~H~H-nd~GlAvAN~laAv~aGa~~vd~ti~GlGE---RaGNa~Le~vv 272 (423)
T 3ivs_A 202 TV----GCATPRQVYDLIRTLRGVVS-CDIECHFH-NDTGMAIANAYCALEAGATHIDTSILGIGE---RNGITPLGALL 272 (423)
T ss_dssp TT----SCCCHHHHHHHHHHHHHHCS-SEEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCBHHHHH
T ss_pred cc----CcCCHHHHHHHHHHHHhhcC-CeEEEEEC-CCCchHHHHHHHHHHhCCCEEEEecccccC---cccchhHHHHH
Confidence 52 44678889999888887664 33444332 23222 334568899999532 233 44455566665
Q ss_pred HHH
Q psy8199 942 KLL 944 (965)
Q Consensus 942 ~~~ 944 (965)
..+
T Consensus 273 ~~L 275 (423)
T 3ivs_A 273 ARM 275 (423)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 272
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=96.96 E-value=0.013 Score=59.61 Aligned_cols=200 Identities=11% Similarity=0.036 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeeccC-CCCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGAT--RFCMGAAWR-ELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~--~i~l~~g~~-~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
.+...+.++++.+.+.|++ ++-+..|.+ |...... .+++.++... +..+.+.+-.... ...++.+.++|++.+.
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~-~~v~~lr~~~p~~~ldvHLmv~~p-~~~i~~~~~aGAd~it 114 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGP-MVLKALRDYGITAGMDVHLMVKPV-DALIESFAKAGATSIV 114 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCH-HHHHHHHHHTCCSCEEEEEECSSC-HHHHHHHHHHTCSEEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCH-HHHHHHHHhCCCCeEEEEEeeCCH-HHHHHHHHHcCCCEEE
Confidence 4566677777777788877 555566654 3223333 3344444443 2333444433332 5578999999999999
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
+..|+.+ ...++++.++++|+++.. .+- +.|..+.++ .+.+ . ++.|-++. ..||.-
T Consensus 115 vH~Ea~~-------------~~~~~i~~ir~~G~k~Gv--aln-p~Tp~e~l~---~~l~-~--vD~VlvMs--V~PGfg 170 (246)
T 3inp_A 115 FHPEASE-------------HIDRSLQLIKSFGIQAGL--ALN-PATGIDCLK---YVES-N--IDRVLIMS--VNPGFG 170 (246)
T ss_dssp ECGGGCS-------------CHHHHHHHHHTTTSEEEE--EEC-TTCCSGGGT---TTGG-G--CSEEEEEC--SCTTC-
T ss_pred Eccccch-------------hHHHHHHHHHHcCCeEEE--Eec-CCCCHHHHH---HHHh-c--CCEEEEee--ecCCCC
Confidence 9987742 135677788899987744 332 233332221 1122 2 56666553 345653
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
=+...+.+.+.+.++-+.....-++..|-+.++-. .+....+..+|||.+++|..+ +... ++.+.++.++
T Consensus 171 GQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~---~~ti~~~~~aGAD~~V~GSaI-f~a~-dp~~~i~~l~ 240 (246)
T 3inp_A 171 GQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN---PYNIAEIAVCGVNAFVAGSAI-FNSD-SYKQTIDKMR 240 (246)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC---TTTHHHHHTTTCCEEEESHHH-HTSS-CHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC---HHHHHHHHHcCCCEEEEehHH-hCCC-CHHHHHHHHH
Confidence 22233323333333322222222345566665543 333456789999999999754 4432 4555555554
No 273
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=96.83 E-value=0.017 Score=59.79 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCC
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS 796 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~ 796 (965)
++..+.++.+.+.|+..+.+....... .......+.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++-+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~- 109 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA- 109 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH-
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc--cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHH-
Confidence 456677777788899999887543221 223445677777775 5788888999999999999999999999988522
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCC---ceeeeE-------EEec-C---CCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGI---NICCGG-------IIGL-S---ESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi---~v~~~~-------i~Gl-~---et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
+.. .+...+ .+++.|. .+.... .+-. + ++..+..+.++.+.+.+ .+.|.++.
T Consensus 110 ---~~~------~~~~~~---~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G--~d~i~~~~ 175 (253)
T 1h5y_A 110 ---VRN------PQLVAL---LAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLTS 175 (253)
T ss_dssp ---HHC------THHHHH---HHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEEE
T ss_pred ---hhC------cHHHHH---HHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCC--CCEEEEec
Confidence 111 111222 2233342 122111 1111 1 12234455567778888 88888775
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHH
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSK 942 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~ 942 (965)
..| .||.. ....+.+ +. .+... +..+-+.++-.. ..+... ++.+||+++++|..++... .+.++..+
T Consensus 176 ~~~-~g~~~----~~~~~~i-~~---l~~~~-~~pvia~GGi~~-~~~~~~-~~~~Ga~~v~vgsal~~~~-~~~~~~~~ 242 (253)
T 1h5y_A 176 IDR-DGTGL----GYDVELI-RR---VADSV-RIPVIASGGAGR-VEHFYE-AAAAGADAVLAASLFHFRV-LSIAQVKR 242 (253)
T ss_dssp TTT-TTTCS----CCCHHHH-HH---HHHHC-SSCEEEESCCCS-HHHHHH-HHHTTCSEEEESHHHHTTS-SCHHHHHH
T ss_pred ccC-CCCcC----cCCHHHH-HH---HHHhc-CCCEEEeCCCCC-HHHHHH-HHHcCCcHHHHHHHHHcCC-CCHHHHHH
Confidence 544 23321 1233322 22 22233 333444443332 134443 4689999999999775443 46889999
Q ss_pred HHHHcCCCc
Q psy8199 943 LLKKLGINT 951 (965)
Q Consensus 943 ~~~~~g~~~ 951 (965)
++++.|+..
T Consensus 243 ~l~~~g~~~ 251 (253)
T 1h5y_A 243 YLKERGVEV 251 (253)
T ss_dssp HHHHTTCBC
T ss_pred HHHHcCCCC
Confidence 999999864
No 274
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.67 E-value=0.0017 Score=68.12 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=55.7
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
+.++++|||+|+.++ .+++.+++.+. ..+++..+.||...||+|+++-.... ++...+.. ..|+
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~----~kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~~--~~K~ 88 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN----ANRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD--SDKR 88 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--SCEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc----cceeccCCCCCCCCeeEEEEEECHHH--hHHHHhcc--CCcE
Confidence 459999999999997 47788887765 34889999999999999999987642 35555554 4899
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 89 Y~a~~~ 94 (327)
T 1k8w_A 89 YRVIAR 94 (327)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999775
No 275
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=96.62 E-value=0.095 Score=57.43 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCc--EeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL--ETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~--~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
.++.++.++.++.+.+.|++.+-+.+ |-. .+...+.++.+++.++ .+..- .....+.++...++|++.+.+
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~---~~~~~~~~~~i~~~~~~~~v~~~-~r~~~~di~~a~~~g~~~v~i 93 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT---PVA---SPQSRKDAEVLASLGLKAKVVTH-IQCRLDAAKVAVETGVQGIDL 93 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTS---CHHHHHHHHHHHTSCCSSEEEEE-EESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC---CcC---CHHHHHHHHHHHhcCCCcEEEEE-cccChhhHHHHHHcCCCEEEE
Confidence 38899999999999999999999844 211 1334466666766443 33221 112467799999999999998
Q ss_pred cCCCCHHHHhcccCCCC----HHHHHHHHHHHHHcC--CceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 792 NLDTSPKLYGDIISTRD----YENRLNTLKNVRNVG--INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~----~~~~~~~i~~~~~~G--i~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
.+-+++-..+ .-+.+ .+...++++.+++.| +.+.....-+...+.+.+.+.++.+.+. ++.|.+.
T Consensus 94 ~~~~s~~~~~--~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~---a~~i~l~---- 164 (382)
T 2ztj_A 94 LFGTSKYLRA--PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY---VDRVGLA---- 164 (382)
T ss_dssp EECC----------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG---CSEEEEE----
T ss_pred EeccCHHHHH--HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh---cCEEEec----
Confidence 8766653333 33334 456788889999999 8877665544456777788888777776 2444433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccc--hhhHHHHhhcCccEEe---e--CCccccCCCCCC
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTKT 937 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~--~~~~~~~l~~Gan~~~---~--g~~~~t~~~~~~ 937 (965)
.| .....|.++.+++...|..+ |+..+.+-+. ++.| ......|+.+||+.+- . |+ .+++.+.
T Consensus 165 --DT----~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~H-nd~GlAvAN~laAv~aGa~~vd~tv~GlGe---raGN~~l 234 (382)
T 2ztj_A 165 --DT----VGVATPRQVYALVREVRRVVGPRVDIEFHGH-NDTGCAIANAYEAIEAGATHVDTTILGIGE---RNGITPL 234 (382)
T ss_dssp --ET----TSCCCHHHHHHHHHHHHHHHTTTSEEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCBH
T ss_pred --CC----CCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC-CCccHHHHHHHHHHHhCCCEEEEccccccc---cccchhH
Confidence 44 23467899999998888865 5554544432 2222 2334568899999543 2 33 4455566
Q ss_pred hhhHHHHHH
Q psy8199 938 NDDSKLLKK 946 (965)
Q Consensus 938 ~~~~~~~~~ 946 (965)
++....|..
T Consensus 235 E~vv~~L~~ 243 (382)
T 2ztj_A 235 GGFLARMYT 243 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777755543
No 276
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.52 E-value=0.0016 Score=67.82 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=55.4
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
+.++++|||+|+.|| .+++.+++.+. ..+++..+.||...||+|+++-... .++...+.. ..|+
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~----~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~~--~~K~ 66 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK----TRKVGHGGTLDPFACGVLIIGVNQG--TRILEFYKD--LKKV 66 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGTT--SCEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc----cceecccccCCCCcceeEEEEECHH--HhHHHHhCc--cCcE
Confidence 458999999999997 47888887774 3488999999999999999999863 344443333 5899
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 67 Y~a~~~ 72 (309)
T 1r3e_A 67 YWVKMR 72 (309)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999775
No 277
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=96.45 E-value=0.0018 Score=67.45 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=56.3
Q ss_pred cCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCe
Q psy8199 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114 (965)
Q Consensus 35 ~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K 114 (965)
.+.++++|||.|+.|| .+++.+++.+. ..+++..+.||...||+|+++-... .++...+. ...|
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~----~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~--~~~K 68 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA----TRRVGHAGTLDPMATGVLVIGIERA--TKILGLLT--AAPK 68 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTT--TSCE
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc----cccccccccCCCCCeEEEEEEECHH--HhHHHHhC--cCCc
Confidence 4569999999999997 47888888775 3488999999999999999998863 34444333 3599
Q ss_pred EEEEEEc
Q psy8199 115 KYLAMVW 121 (965)
Q Consensus 115 ~Y~a~v~ 121 (965)
+|.|.+.
T Consensus 69 ~Y~~~~~ 75 (316)
T 1sgv_A 69 SYAATIR 75 (316)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999775
No 278
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.12 Score=54.14 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=127.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHH--hCCCe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK--VGLDY 788 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~--aG~~~ 788 (965)
+..+.+++++.+++..+.|++-+.+.+|..+... ..+.+++..++.+++ .++.++ +...+.++++.--+ +|.+.
T Consensus 32 ~~~~~~~a~~~A~~~v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~~~vpis--IDT~~~~V~eaaL~~~~Ga~i 109 (300)
T 3k13_A 32 NEKKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPVM--IDSSKWEVIEAGLKCLQGKSI 109 (300)
T ss_dssp HTTCHHHHHHHHHHHHHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHHHTSCEE--EECSCHHHHHHHHHHCSSCCE
T ss_pred hcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhcCCCeEE--EeCCCHHHHHHHHHhcCCCCE
Confidence 3467999999999999999999999776433221 234555555554433 344444 55568899888887 68754
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--EecCCCHHHHHHHHHHHHhc-----CCCCCceeec
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANL-----NPYPESVPIN 861 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~et~ed~~~~l~~l~~l-----~~~~~~i~~~ 861 (965)
|+ .+.....-+++.+.++.++++|..+...-+ -|.+.|.++..+..+.+.++ +--++.|.+-
T Consensus 110 IN-----------dIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilD 178 (300)
T 3k13_A 110 VN-----------SISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFD 178 (300)
T ss_dssp EE-----------EECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred EE-----------eCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 42 222222233445777889999997765444 46778888877666555444 4011334444
Q ss_pred cccccCCC-CCCCCCC---CCHHHHHHHHHHHHHHCCCCceeccccccccchh------------hHHHHhhcCccEEee
Q psy8199 862 NLVQIKGT-PLYGSSI---LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGET------------TQAFCFLAGANSIFY 925 (965)
Q Consensus 862 ~~~P~~gT-~l~~~~~---~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~------------~~~~~l~~Gan~~~~ 925 (965)
||. ++..... ....++++.+..+|..+|...+-+..++...+.. +-..|+.+|.|..++
T Consensus 179 -----Pgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Iv 253 (300)
T 3k13_A 179 -----PNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIV 253 (300)
T ss_dssp -----CCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred -----CCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCCEEec
Confidence 554 2332111 1146777888888877887777777776544332 233567789997665
Q ss_pred CCccccCCCCCChhhHHHHHH
Q psy8199 926 GDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 926 g~~~~t~~~~~~~~~~~~~~~ 946 (965)
.-.-...-..=+++.++..++
T Consensus 254 n~~~~~~~~~i~~~~~~~~~~ 274 (300)
T 3k13_A 254 NPGTSVLYSDIPADTLEKIED 274 (300)
T ss_dssp CCC-CCCGGGSCHHHHHHHHH
T ss_pred CcchhhHHhhcCHHHHHHHHH
Confidence 432111111123455666655
No 279
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=96.33 E-value=0.0023 Score=68.33 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=57.5
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
|..+.++++|||.|+.|| .+++.+++.+. ..+++..+.||...||+|+++-... .++...+.. .
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~----~~KvGH~GTLDP~atGvL~v~~g~a--Tk~~~~l~~--~ 106 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILN----LEKAGHGGTLDPKVSGVLPVALERA--TRVVQALLP--A 106 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGTT--C
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----cceeccccccCCccceeEEEEeChh--hhhHHHhcc--c
Confidence 456789999999999987 47788877764 3588999999999999999999753 345453333 5
Q ss_pred CeEEEEEEc
Q psy8199 113 QRKYLAMVW 121 (965)
Q Consensus 113 ~K~Y~a~v~ 121 (965)
.|+|.|.+.
T Consensus 107 ~K~Y~~~~~ 115 (334)
T 2aus_C 107 GKEYVALMH 115 (334)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 899999875
No 280
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.22 E-value=0.0027 Score=67.85 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=57.9
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
|..+.++++|||.|+.|+ .+++.+++.+. ..+++..+.||..+||+|+++-... .++...+.. .
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~----~~KvGH~GTLDP~AtGvL~v~~G~a--Tk~~~~l~~--~ 126 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILN----LDKAGHGGTLDPKVTGVLPVALERA--TKTIPMWHI--P 126 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTTS--S
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----ccccccccccCCCceeEEEEEeCHH--HhHHHHhcc--C
Confidence 456679999999999997 47788887764 3588999999999999999999753 344443333 7
Q ss_pred CeEEEEEEc
Q psy8199 113 QRKYLAMVW 121 (965)
Q Consensus 113 ~K~Y~a~v~ 121 (965)
.|+|.|.+.
T Consensus 127 ~K~Y~~~~~ 135 (357)
T 2apo_A 127 PKEYVCLMH 135 (357)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 899999875
No 281
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=96.14 E-value=0.0035 Score=67.42 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=57.1
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
|..+.+|++|||.|+.+| .++..+++.+. ..+++..+.||...||+|+++-... .++...+.. .
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~----~kKvGH~GTLDP~AtGvL~v~iG~a--TKl~~~l~~--~ 119 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILR----CEKTGHSGTLDPKVTGCLIVCIDRA--TRLVKSQQG--A 119 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGHHHHHH--S
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----cCcccccCCCCCCCeEEEEEEEChH--HhHhHHhcC--C
Confidence 555789999999999997 47777877764 3588999999999999999998753 334444443 5
Q ss_pred CeEEEEEEc
Q psy8199 113 QRKYLAMVW 121 (965)
Q Consensus 113 ~K~Y~a~v~ 121 (965)
.|+|.|.+.
T Consensus 120 ~K~Y~a~~~ 128 (400)
T 3u28_A 120 GKEYVCIVR 128 (400)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 899999775
No 282
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=96.12 E-value=0.37 Score=49.89 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
...+.++.+.+.|+..+.+.+-. ..+.--.+.++.+++ ..+.+-.....+++..++..+++|.|.+.++....
T Consensus 73 ~p~~~A~~y~~~GA~~isvltd~-----~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l- 146 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVTEQ-----RRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL- 146 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCG-----GGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS-
T ss_pred CHHHHHHHHHHcCCCEEEEecCh-----hhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccC-
Confidence 34455667778899999986542 112222345555554 56777667778888889999999999999876431
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCC
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 877 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~ 877 (965)
+.++..+.++.+++.|+.+...+ .|.+++.. +.+++ .+.|.++. ...+.+ .+
T Consensus 147 ----------~~~~l~~l~~~a~~lGl~~lvev-----~t~ee~~~----A~~~G--ad~IGv~~---r~l~~~----~~ 198 (272)
T 3qja_A 147 ----------EQSVLVSMLDRTESLGMTALVEV-----HTEQEADR----ALKAG--AKVIGVNA---RDLMTL----DV 198 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCEEEEEE-----SSHHHHHH----HHHHT--CSEEEEES---BCTTTC----CB
T ss_pred ----------CHHHHHHHHHHHHHCCCcEEEEc-----CCHHHHHH----HHHCC--CCEEEECC---Cccccc----cc
Confidence 13455566778888888753221 56666443 34568 88888873 221212 12
Q ss_pred CHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchh
Q psy8199 878 DPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 878 ~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~ 954 (965)
+.+...++ +..+|.....+..+-... .+--..+..+||+++.+|+.+.... ++.+..+.+.+.+..|..+
T Consensus 199 dl~~~~~l----~~~v~~~~pvVaegGI~t-~edv~~l~~~GadgvlVGsal~~a~--dp~~~~~~l~~~~~~~~~~ 268 (272)
T 3qja_A 199 DRDCFARI----APGLPSSVIRIAESGVRG-TADLLAYAGAGADAVLVGEGLVTSG--DPRAAVADLVTAGTHPSCP 268 (272)
T ss_dssp CTTHHHHH----GGGSCTTSEEEEESCCCS-HHHHHHHHHTTCSEEEECHHHHTCS--CHHHHHHHHHTTTTCSCCC
T ss_pred CHHHHHHH----HHhCcccCEEEEECCCCC-HHHHHHHHHcCCCEEEEcHHHhCCC--CHHHHHHHHHhhhcCCcCC
Confidence 33333322 223553222233222121 3333355789999999999876554 5777788888887766543
No 283
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.49 Score=49.65 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHh-cCcEeEEecCC------CCHHHHHHHHHh
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLGM------LNENQAYRLKKV 784 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~------~~~e~l~~Lk~a 784 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-+..+.+.+.+++..|++ .++-|.++.|- ..++.+..+.+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~iI~~TTgg~~~~~~~~eeR~~~~~~~ 107 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDVVINVTTGGGGTLGIPVEERAKVVPAL 107 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCCEEEECSSTTGGGTCCHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCeEEEeCCCCcCCCCCCHHHHHHHHHhc
Confidence 4899999999999999999888885433 22234678899999999986 46666665442 234556666676
Q ss_pred CCCeEeccCCC-C-H--HHH-------------------hcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHH
Q psy8199 785 GLDYYNHNLDT-S-P--KLY-------------------GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQR 841 (965)
Q Consensus 785 G~~~i~i~~es-~-~--~~~-------------------~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~ 841 (965)
..+..+++.-| + . +.. ..+.. .++++..+.++.+++.|++... .+| +..++
T Consensus 108 ~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~-N~~~~i~~~~~~~~e~Gi~pE~-e~f----d~g~l 181 (314)
T 3lot_A 108 KPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR-NTFKDLEALSRIFKENDTKPEL-ECY----DIGQI 181 (314)
T ss_dssp CCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC-CCHHHHHHHHHHHHHHTCEEEE-EEC----SHHHH
T ss_pred CCceeeecCCCcccccccccccccccccccchhhcccCCCceec-CCHHHHHHHHHHHHHcCCEEEE-EEE----CHHHH
Confidence 77777777655 2 1 111 12222 3788899999999999998764 444 33333
Q ss_pred HHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCceeccccccccchhhHHHHhhcC
Q psy8199 842 AELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP--TSRIRMSAGRKEMGETTQAFCFLAG 919 (965)
Q Consensus 842 ~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp--~~~i~i~~~~~~~~~~~~~~~l~~G 919 (965)
. .+..+.+-+....-..++..+ |-+- . .+.+++.+.-++..+..+++ +....+ ++.....-.+...++..|
T Consensus 182 ~-~~~~l~~~Gll~~p~~~~~Vl---Gv~~-G-~~~~p~~L~~~~~~~~~l~~~~~~~Wsv-~g~Gr~q~p~~~~A~~~G 254 (314)
T 3lot_A 182 Y-NTAFMFHEGYLEPPLRLQFIH---GILG-G-IGTAVEDVLFMKQTADRLIGRENYTWSL-VGAGRFQMPLGTLAVIMG 254 (314)
T ss_dssp H-HHHHHHHTTCSCSSEEEEEEE---CCBT-S-CCCCHHHHHHHHHHHHHHTCGGGEEEEE-EECGGGHHHHHHHHHHTT
T ss_pred H-HHHHHHHCCCCCCCceEEEEe---cCCC-C-CCCCHHHHHHHHHHhhhccCCCCCeEEE-EecChhhHHHHHHHHHcC
Confidence 3 344445545211111222111 3221 1 24578888887777755565 321111 111111123445677888
Q ss_pred ccEE-eeCCccccCCCC----C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 920 ANSI-FYGDKLLTTDNT----K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 920 an~~-~~g~~~~t~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
-|.- =.+|++.-..|. | +++..++++++|+.++. .+|.++.|
T Consensus 255 GhvRVGlEDnl~~~~G~lA~sNa~lV~~~~~i~~~lGr~vAT-p~EAR~iL 304 (314)
T 3lot_A 255 GDVRVGLEDSLYIERGKLAKSNAEQVEKMVRIVKELGKRPAT-PDEVREIL 304 (314)
T ss_dssp CEEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCEECC-HHHHHHHH
T ss_pred CceEEccCcccccCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 8832 234555444442 2 45667888999998775 44555544
No 284
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=95.72 E-value=0.13 Score=51.76 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeeccC-CCCcccHHHHHHHHHHHH--hcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGAT--RFCMGAAWR-ELKDRDLDNIENMICEVK--KIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~--~i~l~~g~~-~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+...+.++++.+.+.|++ ++-+..|.+ |......+ +++.++... +..+.+.+-.... ...++.+.++|++.+
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~-~v~~ir~~~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~i 91 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHP-VVESLRKQLGQDPFFDMHMMVSKP-EQWVKPMAVAGANQY 91 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHH-HHHHHHHHHCSSSCEEEEEECSCG-GGGHHHHHHHTCSEE
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHH-HHHHHHHhhCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEE
Confidence 3455566777777778877 455556654 32333343 344444442 2333444433222 356889999999999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
.+..|+.+ +..+.++.++++|+++.. .+- +.|..+.++ .+.+. .+.|-++.. .||.
T Consensus 92 tvH~Ea~~-------------~~~~~i~~i~~~G~k~gv--al~-p~t~~e~l~---~~l~~---~D~Vl~msv--~pGf 147 (228)
T 3ovp_A 92 TFHLEATE-------------NPGALIKDIRENGMKVGL--AIK-PGTSVEYLA---PWANQ---IDMALVMTV--EPGF 147 (228)
T ss_dssp EEEGGGCS-------------CHHHHHHHHHHTTCEEEE--EEC-TTSCGGGTG---GGGGG---CSEEEEESS--CTTT
T ss_pred EEccCCch-------------hHHHHHHHHHHcCCCEEE--EEc-CCCCHHHHH---HHhcc---CCeEEEeee--cCCC
Confidence 99876632 135677788899987643 332 334332222 12222 466655533 3554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
-=.... + ..++.+...|...++..+-+..+-. .+....+..+|||.+++|..+ +... ++.+.++.+++
T Consensus 148 ~Gq~f~---~-~~l~ki~~lr~~~~~~~I~VdGGI~---~~t~~~~~~aGAd~~VvGsaI-f~a~-dp~~~~~~l~~ 215 (228)
T 3ovp_A 148 GGQKFM---E-DMMPKVHWLRTQFPSLDIEVDGGVG---PDTVHKCAEAGANMIVSGSAI-MRSE-DPRSVINLLRN 215 (228)
T ss_dssp CSCCCC---G-GGHHHHHHHHHHCTTCEEEEESSCS---TTTHHHHHHHTCCEEEESHHH-HTCS-CHHHHHHHHHH
T ss_pred CCcccC---H-HHHHHHHHHHHhcCCCCEEEeCCcC---HHHHHHHHHcCCCEEEEeHHH-hCCC-CHHHHHHHHHH
Confidence 222222 2 2233355556667776676776553 334456789999999999755 4432 45665555543
No 285
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=95.67 E-value=0.17 Score=51.12 Aligned_cols=193 Identities=11% Similarity=0.100 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHCCCCE--EEEeeccC-CCCcccHHHHHHHHHHHHhc-CcEeEEecCCCC-HHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATR--FCMGAAWR-ELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~--i~l~~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~-~e~l~~Lk~aG~~~i~ 790 (965)
+.-.+.++++.+ +.|++. +-+..|.+ |...... +.++.+++. ...+-++.-..+ ...++.+.++|.+.+.
T Consensus 11 D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~----~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~it 85 (231)
T 3ctl_A 11 DLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSP----FFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFIT 85 (231)
T ss_dssp CGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCH----HHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEE
T ss_pred ChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcH----HHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 444566667777 778775 55556654 3222223 355556652 333333222222 3357999999999999
Q ss_pred ccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 791 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 791 i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
+-.|+ .+ ...++++.+++.|.++...+ -+.|+.+.++. +.+ + .+.|-++... ||+
T Consensus 86 vh~Ea~~~-------------~~~~~i~~i~~~G~k~gv~l---np~tp~~~~~~---~l~-~--~D~VlvmsV~--pGf 141 (231)
T 3ctl_A 86 LHPETING-------------QAFRLIDEIRRHDMKVGLIL---NPETPVEAMKY---YIH-K--ADKITVMTVD--PGF 141 (231)
T ss_dssp ECGGGCTT-------------THHHHHHHHHHTTCEEEEEE---CTTCCGGGGTT---TGG-G--CSEEEEESSC--TTC
T ss_pred ECcccCCc-------------cHHHHHHHHHHcCCeEEEEE---ECCCcHHHHHH---HHh-c--CCEEEEeeec--cCc
Confidence 88765 42 12467888899998875433 23444333221 112 2 5777666444 454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhhcCccEEeeC-CccccCCCCC-ChhhHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYG-DKLLTTDNTK-TNDDSKL 943 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g-~~~~t~~~~~-~~~~~~~ 943 (965)
-=+...+ ..++.+...|.+.+ +..|-+.++-+ .+....+..+|||.+++| ..+.... + +.+.++.
T Consensus 142 ggQ~f~~----~~l~kI~~lr~~~~~~~~~~~I~VdGGI~---~~~~~~~~~aGAd~~V~G~saif~~~--d~~~~~~~~ 212 (231)
T 3ctl_A 142 AGQPFIP----EMLDKLAELKAWREREGLEYEIEVDGSCN---QATYEKLMAAGADVFIVGTSGLFNHA--ENIDEAWRI 212 (231)
T ss_dssp SSCCCCT----THHHHHHHHHHHHHHHTCCCEEEEESCCS---TTTHHHHHHHTCCEEEECTTTTGGGC--SSHHHHHHH
T ss_pred CCccccH----HHHHHHHHHHHHHhccCCCceEEEECCcC---HHHHHHHHHcCCCEEEEccHHHhCCC--CcHHHHHHH
Confidence 3222222 22333333444432 34455565443 233445689999999999 7654322 3 5566665
Q ss_pred HHH
Q psy8199 944 LKK 946 (965)
Q Consensus 944 ~~~ 946 (965)
+++
T Consensus 213 l~~ 215 (231)
T 3ctl_A 213 MTA 215 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 286
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=95.47 E-value=0.16 Score=52.61 Aligned_cols=137 Identities=11% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+++++++.++++.+.|+.-+-+.+....+ ....++++...++.+++.++.++ ....+.++++.-.++|.+
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piS--IDT~~~~va~aAl~aGa~ 102 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVS--IDTMRADVARAALQNGAQ 102 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEE--EECSCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEE--EeCCCHHHHHHHHHcCCC
Confidence 4789999999999999999999997633211 14457888888888876554443 444566666666666666
Q ss_pred eEe-ccCCC-CHHHHhcc----------cC---CC----------C-----HHHHHHHHHHHHHcCCc---eeeeEEEec
Q psy8199 788 YYN-HNLDT-SPKLYGDI----------IS---TR----------D-----YENRLNTLKNVRNVGIN---ICCGGIIGL 834 (965)
Q Consensus 788 ~i~-i~~es-~~~~~~~i----------~~---~~----------~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl 834 (965)
.|+ ++-.. +++.++-+ +. +. . .+...+.++.+.++|++ +...--+|+
T Consensus 103 iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf 182 (280)
T 1eye_A 103 MVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 182 (280)
T ss_dssp EEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred EEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCc
Confidence 654 22222 33333211 10 00 1 44455778888899995 555555566
Q ss_pred CCCHHHHHHHHHHHHhcC
Q psy8199 835 SESRDQRAELIFQLANLN 852 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~ 852 (965)
+.+.++-.++++.+.++.
T Consensus 183 ~k~~~~n~~ll~~l~~~~ 200 (280)
T 1eye_A 183 AKTAQHNWAILHALPELV 200 (280)
T ss_dssp SCCHHHHHHHHHTHHHHH
T ss_pred ccCHHHHHHHHHHHHHhh
Confidence 788888888888777765
No 287
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=95.29 E-value=0.58 Score=48.04 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=116.4
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHH
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~ 798 (965)
..+.++.+.+.|+..+.+...... ........+.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++-+.
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~--~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~--- 106 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITAS--VEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAA--- 106 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCS--SSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHH---
T ss_pred HHHHHHHHHHcCCCEEEEECCchh--hcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHH---
Confidence 344456667889999988764322 1234456777788876 5788999999999999999999999999888633
Q ss_pred HHhcccCCCCHHHHHHHHHHHHH--cCCceeee------EEEecCCC---HHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 799 LYGDIISTRDYENRLNTLKNVRN--VGINICCG------GIIGLSES---RDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~------~i~Gl~et---~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
+.. ++...+.++.... ..+.+.+. .+.=.+.. ..+..+.++.+.+++ .+.+.++...+ .
T Consensus 107 -l~~------p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~-~ 176 (253)
T 1thf_D 107 -VEN------PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTSIDR-D 176 (253)
T ss_dssp -HHC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETTT-T
T ss_pred -HhC------hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCC--CCEEEEEeccC-C
Confidence 111 1223333333321 11222221 11113321 113455556667777 67665543222 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHc
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~ 947 (965)
|+. ..++.+.+.++ +... +..+-..++-.. ..+... ++.+||+++++|..++... .++++..+.+++.
T Consensus 177 g~~----~g~~~~~~~~l----~~~~-~ipvia~GGI~~-~~d~~~-~~~~Gadgv~vGsal~~~~-~~~~~~~~~l~~~ 244 (253)
T 1thf_D 177 GTK----SGYDTEMIRFV----RPLT-TLPIIASGGAGK-MEHFLE-AFLAGADAALAASVFHFRE-IDVRELKEYLKKH 244 (253)
T ss_dssp TSC----SCCCHHHHHHH----GGGC-CSCEEEESCCCS-HHHHHH-HHHTTCSEEEESHHHHTTC-SCHHHHHHHHHHT
T ss_pred CCC----CCCCHHHHHHH----HHhc-CCCEEEECCCCC-HHHHHH-HHHcCChHHHHHHHHHcCC-CCHHHHHHHHHHc
Confidence 221 11233322222 2222 222333332222 134443 4689999999998765433 3688889999999
Q ss_pred CCCcc
Q psy8199 948 GINTR 952 (965)
Q Consensus 948 g~~~~ 952 (965)
|+...
T Consensus 245 g~~~~ 249 (253)
T 1thf_D 245 GVNVR 249 (253)
T ss_dssp TCCCC
T ss_pred CCccc
Confidence 97543
No 288
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=95.26 E-value=1.8 Score=44.45 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=107.8
Q ss_pred HHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHH
Q psy8199 721 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 799 (965)
Q Consensus 721 ~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~ 799 (965)
.+.++.+.+.|+..+.+.+...- .....+++ +.+++ .++.+-...+..++..+...+.+|.|.+.+....-
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~-f~Gs~~~L----~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L--- 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPS-FQGAPEFL----TAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASV--- 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTT-TCCCHHHH----HHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS---
T ss_pred HHHHHHHHHCCCCEEEEeccccc-cCCCHHHH----HHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEccccc---
Confidence 44456666789999998775322 22344544 33444 57777777788899999999999999999886331
Q ss_pred HhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCH
Q psy8199 800 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 879 (965)
Q Consensus 800 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~ 879 (965)
+.++..+.++.+++.|+.+-.-+ +|.+|+ +.+.+++ ++.|.++... +... .++.
T Consensus 154 --------~~~~l~~l~~~a~~lGl~~lvev-----h~~eEl----~~A~~~g--a~iIGinnr~------l~t~-~~dl 207 (272)
T 3tsm_A 154 --------DDDLAKELEDTAFALGMDALIEV-----HDEAEM----ERALKLS--SRLLGVNNRN------LRSF-EVNL 207 (272)
T ss_dssp --------CHHHHHHHHHHHHHTTCEEEEEE-----CSHHHH----HHHTTSC--CSEEEEECBC------TTTC-CBCT
T ss_pred --------CHHHHHHHHHHHHHcCCeEEEEe-----CCHHHH----HHHHhcC--CCEEEECCCC------CccC-CCCh
Confidence 24556677788999998643222 466654 3445778 8889888331 2221 1243
Q ss_pred HHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 880 LEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 880 ~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
+...++. ..+|...+.++.+-... .+--..+..+||+++.+|+.++...
T Consensus 208 ~~~~~L~----~~ip~~~~vIaesGI~t-~edv~~l~~~Ga~gvLVG~almr~~ 256 (272)
T 3tsm_A 208 AVSERLA----KMAPSDRLLVGESGIFT-HEDCLRLEKSGIGTFLIGESLMRQH 256 (272)
T ss_dssp HHHHHHH----HHSCTTSEEEEESSCCS-HHHHHHHHTTTCCEEEECHHHHTSS
T ss_pred HHHHHHH----HhCCCCCcEEEECCCCC-HHHHHHHHHcCCCEEEEcHHHcCCc
Confidence 4444333 23564334444333332 3334455889999999999875443
No 289
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=95.20 E-value=0.28 Score=49.90 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHh--cCcEeEE-----ecCCCCHHHHHHHHHhCCCeEeccCCC---CHHHHhccc--CCCCHHHHHHHHH
Q psy8199 750 DNIENMICEVKK--IGLETCL-----TLGMLNENQAYRLKKVGLDYYNHNLDT---SPKLYGDII--STRDYENRLNTLK 817 (965)
Q Consensus 750 ~~~~~~~~~i~~--~~~~i~~-----~~~~~~~e~l~~Lk~aG~~~i~i~~es---~~~~~~~i~--~~~~~~~~~~~i~ 817 (965)
+-.+|+.+++-. .++.+.. .++......++.||++|+..+ ++.-| -+..|++.. .+-++++-.+.++
T Consensus 79 ~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~ 157 (286)
T 2p10_A 79 QIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIA 157 (286)
T ss_dssp HHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHH
Confidence 445677766654 2444433 456667888999999999999 77765 366666553 4668999999999
Q ss_pred HHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc--CCCCCCCCCCCCH----HHHHHHHHHHHH
Q psy8199 818 NVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI--KGTPLYGSSILDP----LEFIRTIAVARI 891 (965)
Q Consensus 818 ~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~--~gT~l~~~~~~~~----~~~~~~ia~~R~ 891 (965)
.+++.|+.+....- +.++. +.+.+++ ++.|-+. .|. .| -+......+. +.+.++...+|.
T Consensus 158 ~A~~~gL~Ti~~v~-----~~eeA----~amA~ag--pDiI~~h--~glT~gg-lIG~~~avs~~~~~e~i~~i~~a~~~ 223 (286)
T 2p10_A 158 EAHKLDLLTTPYVF-----SPEDA----VAMAKAG--ADILVCH--MGLTTGG-AIGARSGKSMDDCVSLINECIEAART 223 (286)
T ss_dssp HHHHTTCEECCEEC-----SHHHH----HHHHHHT--CSEEEEE--CSCC----------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeEEEecC-----CHHHH----HHHHHcC--CCEEEEC--CCCCCCC-cccCCCcccHHHhHHHHHHHHHHHHH
Confidence 99999997654322 44444 3456788 8888666 221 11 1122233344 446677788899
Q ss_pred HCCCCceeccccccccchhhHHHHhhc--CccEEeeCCcc
Q psy8199 892 TMPTSRIRMSAGRKEMGETTQAFCFLA--GANSIFYGDKL 929 (965)
Q Consensus 892 ~lp~~~i~i~~~~~~~~~~~~~~~l~~--Gan~~~~g~~~ 929 (965)
.-|+..+-..++......+.+ .++.. |+++++.++.+
T Consensus 224 vnpdvivLc~gGpIstpeDv~-~~l~~t~G~~G~~gASsi 262 (286)
T 2p10_A 224 IRDDIIILSHGGPIANPEDAR-FILDSCQGCHGFYGASSM 262 (286)
T ss_dssp HCSCCEEEEESTTCCSHHHHH-HHHHHCTTCCEEEESHHH
T ss_pred hCCCcEEEecCCCCCCHHHHH-HHHhcCCCccEEEeehhh
Confidence 999985544443545444444 55777 99998877654
No 290
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=95.08 E-value=3 Score=43.70 Aligned_cols=236 Identities=12% Similarity=0.088 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHh-cCcEeEEecC----CCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLG----MLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~----~~~~e~l~~Lk~aG~ 786 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-...+.+.+.+++..|++ ...-|.++.| .-.++.+..+.+...
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~~P 107 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPHMTVEERLRPATHYMP 107 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSCTTSCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhcCC
Confidence 4899999999999999999888885433 12235678899999999986 4544544332 334566777777677
Q ss_pred CeEeccCCC-CHH------HH----------------hcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHH
Q psy8199 787 DYYNHNLDT-SPK------LY----------------GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE 843 (965)
Q Consensus 787 ~~i~i~~es-~~~------~~----------------~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~ 843 (965)
+..+++.-| +=. .| ..+. ..+++...+.++.+++.|++... .+| +..++..
T Consensus 108 e~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~n~~~~i~~~~~~~~e~Gi~pE~-e~f----d~g~l~~ 181 (311)
T 3e49_A 108 ELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVF-KNTFADIEFILKTCGGNGTRFEF-ECY----DTSHLYN 181 (311)
T ss_dssp SEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEE-CCCHHHHHHHHHHHHTTTCEEEE-EEC----SHHHHHH
T ss_pred CeeeecCCCcccccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeeEE-EEE----CHHHHHH
Confidence 777777555 210 00 1122 23788889999999999998764 344 3344444
Q ss_pred HHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-
Q psy8199 844 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS- 922 (965)
Q Consensus 844 ~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~- 922 (965)
. ..+.+.+....-+.++..+ |-+ .. .+.+++.+.-++..+...+|.--.-..++.....-.+...++..|-+.
T Consensus 182 ~-~~l~~~Gl~~~p~~~~~vl---Gv~-~g-~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~~p~~~~A~~~GGhvR 255 (311)
T 3e49_A 182 L-AHFVDRKLATPPFFVQTVF---GLL-GG-IGPHPEDLAHMRRTADRLFGADYVWSILGAGRHQIPLASIGAAQGANVR 255 (311)
T ss_dssp H-HHHHHTTCSCSSEEEEEEE---SCT-TS-CCCCHHHHHHHHHHHHHHHGGGEEEEEEECGGGHHHHHHHHHTTTCEEE
T ss_pred H-HHHHHcCCCCCCeEEEEEe---cCC-CC-CCCCHHHHHHHHHHHHhhCCCCCeEEEEeeChhhHHHHHHHHHcCCCeE
Confidence 4 4444444211112222111 322 12 245788887777666455553211111111111123445577888883
Q ss_pred EeeCCccccCCCC----C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 923 IFYGDKLLTTDNT----K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 923 ~~~g~~~~t~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+=.+|++.-..|. | +++..++++++|+.++. .+|.++.|
T Consensus 256 VGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vAT-p~EAR~iL 301 (311)
T 3e49_A 256 VGLEDSLWIAPGELAETNAAQVRKIRQVIEGLSLEVAS-PAEARTML 301 (311)
T ss_dssp ECTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCC-HHHHHHHH
T ss_pred EcCCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 2244555444442 2 44667888999998876 44555544
No 291
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=95.01 E-value=0.46 Score=49.02 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHh--CCCeEe
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN 790 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~a--G~~~i~ 790 (965)
..+.+.+++.+++..+.|+.-+.+.++.. ...+.+++..+++.+++. ++.++ +...+.++++.-.++ |.+.++
T Consensus 30 ~~~~~~a~~~a~~~v~~GAdiIDIg~~s~--~~eE~~rv~~vi~~l~~~~~~pis--IDT~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 30 NKDPRPIQEWARRQAEKGAHYLDVNTGPT--ADDPVRVMEWLVKTIQEVVDLPCC--LDSTNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp TTCCHHHHHHHHHHHHTTCSEEEEECCSC--SSCHHHHHHHHHHHHHHHCCCCEE--EECSCHHHHHHHHHHCCSCCEEE
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEcCCcC--chhHHHHHHHHHHHHHHhCCCeEE--EeCCCHHHHHHHHHhCCCCCEEE
Confidence 35789999999999999999999977652 345688999999999864 55554 455589999999999 987765
Q ss_pred -ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--EecCCCHHHHH----HHHHHHHhcCCCCC--ceeec
Q psy8199 791 -HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRA----ELIFQLANLNPYPE--SVPIN 861 (965)
Q Consensus 791 -i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~et~ed~~----~~l~~l~~l~~~~~--~i~~~ 861 (965)
++.+ .+++.+.+..++++|..+...-+ -|.+.|.+++. +.++.+.+.+ +. .|.+-
T Consensus 106 dvs~~--------------~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~G--i~~~~IilD 169 (271)
T 2yci_X 106 STSAD--------------QWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHG--IPMTELYID 169 (271)
T ss_dssp EECSC--------------HHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTT--CCGGGEEEE
T ss_pred ECCCC--------------ccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCcccEEEe
Confidence 4321 13345667777888886654333 45566755444 4444555555 22 24333
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccch--------hhHHHHhhcCccEEee
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGE--------TTQAFCFLAGANSIFY 925 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~--------~~~~~~l~~Gan~~~~ 925 (965)
||.-+-........+.++.+..++..+ |...+-+..++...+. -+...++.+|++..++
T Consensus 170 -----Pg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Snksfg~~~r~~l~~t~~~~a~~~g~~~~iv 237 (271)
T 2yci_X 170 -----PLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSNVSQKCPDRPLINRTYLVMAMTAGLDAAIM 237 (271)
T ss_dssp -----CCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCccccCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 444221111112234555555555555 5555555555543321 2223456688887655
No 292
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=94.95 E-value=3.4 Score=43.25 Aligned_cols=236 Identities=11% Similarity=0.108 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHh-cCcEeEEecC----CCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLG----MLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~----~~~~e~l~~Lk~aG~ 786 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-...+.+.+.+++..|++ ...-|.++.| .-.++.+..+.+...
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~~P 107 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDAILNITTGGGLGMSLDERLAPARAARP 107 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCCEEEECSSCSTTCCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhcCC
Confidence 3899999999999999999888885433 12235678899999999986 4554544332 334566777777677
Q ss_pred CeEeccCCC-CHH------HHh----------------cccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHH
Q psy8199 787 DYYNHNLDT-SPK------LYG----------------DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE 843 (965)
Q Consensus 787 ~~i~i~~es-~~~------~~~----------------~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~ 843 (965)
+..+++.-| +=. .|+ .+. ..+++...+.++.+++.|++... .+| +..++..
T Consensus 108 e~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~-~n~~~~i~~~~~~~~e~Gi~pE~-e~f----d~g~l~~ 181 (311)
T 3e02_A 108 EVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFIL-SNTFSQIERGMTELGASGTRFEF-ECY----DVGHLYN 181 (311)
T ss_dssp SEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEE-CCCHHHHHHHHHHHHTTTCEEEE-EEC----SHHHHHH
T ss_pred CeeeecCCCceeccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeEEE-EEE----cHHHHHH
Confidence 777777555 211 111 111 34678888999999999998764 344 3344444
Q ss_pred HHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-
Q psy8199 844 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS- 922 (965)
Q Consensus 844 ~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~- 922 (965)
. ..+.+.+....-+.++..+ |-+ .. .+.+++.+.-++..+...+|.--.-..++.....-.+...++..|-+.
T Consensus 182 ~-~~l~~~Gl~~~p~~~~~vl---Gv~-~g-~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~~p~~~~A~~~GGhvR 255 (311)
T 3e02_A 182 L-AHFVDRKLVEPPFFLQCVF---GIL-GG-IGADPENLLHMRTIADRLFGQDYYLSVLAAGRHQMPFVTMSAILGGNVR 255 (311)
T ss_dssp H-HHHHHTTSSCSCEEEEEEE---CCB-TS-CCSCHHHHHHHHHHHHHHHTTSEEEEEEECGGGHHHHHHHHHHTTCEEE
T ss_pred H-HHHHHcCCCCCCeEEEEEe---cCC-CC-CCCCHHHHHHHHHHHHhhCCCCCceEEEeeChhhHHHHHHHHHcCCCeE
Confidence 4 3444444211112222111 322 12 245788888777777555554211111111111123445677888883
Q ss_pred EeeCCccccCCCC----C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 923 IFYGDKLLTTDNT----K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 923 ~~~g~~~~t~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+=.+|++.-..|. | +++..++++++|+.++. .+|.++.|
T Consensus 256 VGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vAT-p~EAR~iL 301 (311)
T 3e02_A 256 VGLEDSLYSGKGQLATSNAEQVRKIRRIIEELSLDIAT-PDEARAML 301 (311)
T ss_dssp ESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCC-HHHHHHHH
T ss_pred EccCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 2244555444442 2 44667888999998876 44555544
No 293
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=94.94 E-value=0.15 Score=51.57 Aligned_cols=199 Identities=13% Similarity=0.069 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE--eeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCC-HHHHHHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLN-ENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l--~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~-~e~l~~Lk~aG~~~i~i 791 (965)
+...+.++++.+.+.|++.+++ .+|.+.+ . +..-.+.++.+++ ....+.++.-..+ ++.++.+.++|++.+.+
T Consensus 15 D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp-~--~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 15 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVP-N--ITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-C--BCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEE
T ss_pred CHhHHHHHHHHHHHcCCCEEEEEEEecCCCc-c--hhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEE
Confidence 3456666777777888886544 3443311 1 1122256666665 2333332221112 44679999999999999
Q ss_pred cCC--CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 792 NLD--TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 792 ~~e--s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
..| +.+ ...+.++.+++.|+.+.. .+ -+.|..+.++ .+.+ + .+.|.++...|.-|.
T Consensus 92 h~e~~~~~-------------~~~~~~~~i~~~g~~~gv--~~-~p~t~~e~~~---~~~~-~--~D~v~~msv~pg~gg 149 (230)
T 1tqj_A 92 HVEHNASP-------------HLHRTLCQIRELGKKAGA--VL-NPSTPLDFLE---YVLP-V--CDLILIMSVNPGFGG 149 (230)
T ss_dssp ECSTTTCT-------------THHHHHHHHHHTTCEEEE--EE-CTTCCGGGGT---TTGG-G--CSEEEEESSCC----
T ss_pred Ccccccch-------------hHHHHHHHHHHcCCcEEE--EE-eCCCcHHHHH---HHHh-c--CCEEEEEEeccccCC
Confidence 987 432 224667778888887643 33 2345544432 1222 3 677877766554332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
....+...+.+.++-+.....-.+..+-+..+-.. +....+..+|||.+++|..+.... ++.+..+.+++
T Consensus 150 --q~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~---~~~~~~~~aGad~vvvGSai~~a~--d~~~~~~~l~~ 219 (230)
T 1tqj_A 150 --QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP---NNTWQVLEAGANAIVAGSAVFNAP--NYAEAIAGVRN 219 (230)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT---TTTHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHHT
T ss_pred --ccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH---HHHHHHHHcCCCEEEECHHHHCCC--CHHHHHHHHHH
Confidence 22232233333332222211111344555544332 223345789999999998664332 45666665554
No 294
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=94.52 E-value=1.8 Score=44.61 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-CCCc---------------ccHHHHHHHHHHHHhc--CcEeEEecCCCC---
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-ELKD---------------RDLDNIENMICEVKKI--GLETCLTLGMLN--- 774 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~---------------~~~~~~~~~~~~i~~~--~~~i~~~~~~~~--- 774 (965)
+.++.++.++.+.+.|+..+.+..... |..+ ...+.++++++++++. .+.+.+- +..+
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n~v~ 107 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYNPIF 107 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCcHHH
Confidence 457778888899999999998843211 1111 1235677888888874 5665542 2222
Q ss_pred ----HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHh
Q psy8199 775 ----ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 850 (965)
Q Consensus 775 ----~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~ 850 (965)
+..++.++++|++.+.+. +-..++..+.++.++++|+.+. .++ -+.+.++++..+ .+
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~-------------dl~~ee~~~~~~~~~~~gl~~i--~l~-~p~t~~~rl~~i---a~ 168 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP-------------DLPPEEAEELKAVMKKYVLSFV--PLG-APTSTRKRIKLI---CE 168 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT-------------TCCHHHHHHHHHHHHHTTCEEC--CEE-CTTCCHHHHHHH---HH
T ss_pred HhhHHHHHHHHHHcCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCcEE--EEe-CCCCCHHHHHHH---HH
Confidence 577889999999987764 2234778888899999998652 222 233444333333 23
Q ss_pred cCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 851 LNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 851 l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
.. ..++........-|+. .+.+..+..+.++..|... +..+-+. -+-...+.. ..+..|||++++|..++
T Consensus 169 ~a--~gfiy~vs~~g~TG~~----~~~~~~~~~~~v~~vr~~~-~~pv~vG--~GI~t~e~~-~~~~~gADgvIVGSai~ 238 (262)
T 2ekc_A 169 AA--DEMTYFVSVTGTTGAR----EKLPYERIKKKVEEYRELC-DKPVVVG--FGVSKKEHA-REIGSFADGVVVGSALV 238 (262)
T ss_dssp HC--SSCEEEESSCC-------------CHHHHHHHHHHHHHC-CSCEEEE--SSCCSHHHH-HHHHTTSSEEEECHHHH
T ss_pred hC--CCCEEEEecCCccCCC----CCcCcccHHHHHHHHHhhc-CCCEEEe--CCCCCHHHH-HHHHcCCCEEEECHHHH
Confidence 33 2333222111122221 1222145667777777766 3333333 222213322 23788999999998664
No 295
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=94.52 E-value=3 Score=42.87 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhc--CcEeEEecCCC---CHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML---NENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~---~~e~l~~Lk~aG~~ 787 (965)
..+++||.+.+.+..+.|+.-+++--=.. .-...+.+.|.+++..|++. ++-+.++.|.. .++. ..+.+...+
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~Pe 104 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLRPD 104 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGCCS
T ss_pred CCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcCCC
Confidence 38999999999999999998888854321 22345788999999999873 66666655432 1222 223344566
Q ss_pred eEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 788 YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 788 ~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
..+++.-| + ..+.+. ..+++...+.++.+++.|++... .+| +..++.. +..+.+-+....-+.++..+
T Consensus 105 ~aSl~~gs~N--f~~~v~-~N~~~~~~~~~~~~~e~Gi~pE~-e~f----d~g~l~~-~~~l~~~Gl~~~p~~~~~vl-- 173 (275)
T 3no5_A 105 MASLATGSVN--FPTRVY-DNPPELVDWLAAEMKTYGIKPEV-EAF----DLSMIFQ-AAAMQAAGAIVGPLHIQFVM-- 173 (275)
T ss_dssp EEEEECSCEE--CSSSEE-CCCHHHHHHHHHHHHHTTCEEEE-EES----STHHHHH-HHHHHHHTSSCSSCEEEEEE--
T ss_pred EEEecCcccc--cccccc-cCCHHHHHHHHHHHHHcCCeeEE-EEE----cHHHHHH-HHHHHHCCCCCCCeeEEEEe--
Confidence 77766555 2 001222 34688889999999999998764 444 2333333 33344434211111122111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-EeeCCccccCCCC----C---Ch
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS-IFYGDKLLTTDNT----K---TN 938 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~-~~~g~~~~t~~~~----~---~~ 938 (965)
|-+ .-.+.+++.+.-++..++.+-++....+ ++.....-.+...++..|-+. +=.+|++.-..|. | ++
T Consensus 174 -Gv~--~g~~~~~~~l~~~~~~l~~~~~~~~w~v-~g~Gr~~~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~lV~ 249 (275)
T 3no5_A 174 -GIK--NAMPVDREVLEFYVQTLKRLSPDATWTG-AGIGRHQLTMARWSLELGGHCRTGLEDNVRLDKNTLAPSNAALVR 249 (275)
T ss_dssp -CCT--TSCCCCHHHHHHHHHHHHHHCTTCEEEE-EECGGGHHHHHHHHHHHTCEEEESTTTCCBSSSSCBCSCHHHHHH
T ss_pred -CCC--CCCCCCHHHHHHHHHHHHhCCCCCeEEE-EecCHhhHHHHHHHHHhCCCeEEcCCcceeCCCCCCCCCHHHHHH
Confidence 321 1234577777777766655333332111 111111123445677888883 2244655545552 1 34
Q ss_pred hhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 939 DDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 939 ~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+..++++.+|+.++ +.+|.++.|
T Consensus 250 ~~~~i~~~~gr~vA-tp~eAR~iL 272 (275)
T 3no5_A 250 QVAELCEEYGRPVA-TAAQAREIM 272 (275)
T ss_dssp HHHHHHHHTTCCBC-CHHHHHHHT
T ss_pred HHHHHHHHcCCCCC-CHHHHHHHh
Confidence 66778899999988 555666554
No 296
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=94.26 E-value=1.6 Score=44.72 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=116.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHh--CCCeEe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV--GLDYYN 790 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~a--G~~~i~ 790 (965)
+..+++.+++.+++..+.|+.-+.+.+|..+ ....+.+..++..+++. ..+-+++...+.++++.-.++ |.+.++
T Consensus 20 ~~~~~~~a~~~a~~~v~~GAdiIDIg~g~~~--v~~~ee~~rvv~~i~~~-~~~pisIDT~~~~v~~aAl~a~~Ga~iIN 96 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEGGARALDLNVGPAV--QDKVSAMEWLVEVTQEV-SNLTLCLDSTNIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp HHTCHHHHHHHHHHHHHHTCSEEEEBCC------CHHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHHCSSCEEEE
T ss_pred hcCCHHHHHHHHHHHHHCCCcEEEECCCCCC--CChHHHHHHHHHHHHHh-CCCeEEEeCCCHHHHHHHHhhCCCCCEEE
Confidence 3468999999999999999999999776433 23456676777766653 234455666789999998888 886553
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--EecCCCHHHHHH----HHHHHHhcCCCCCceeecccc
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAE----LIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~et~ed~~~----~l~~l~~l~~~~~~i~~~~~~ 864 (965)
.+... .+.+.+.++.++++|..+...-+ -|.++|.++..+ .++.+.+.+--.+.|.+-
T Consensus 97 -----------dvs~~--~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilD--- 160 (262)
T 1f6y_A 97 -----------STNAE--REKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYID--- 160 (262)
T ss_dssp -----------EECSC--HHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEE---
T ss_pred -----------ECCCC--cccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEe---
Confidence 12211 24445677788899987654333 356677776644 444455555101244444
Q ss_pred ccCCCC-CCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccch--------hhHHHHhhcCccEEeeCC
Q psy8199 865 QIKGTP-LYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGE--------TTQAFCFLAGANSIFYGD 927 (965)
Q Consensus 865 P~~gT~-l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~--------~~~~~~l~~Gan~~~~g~ 927 (965)
||.- +.. ..-...+.++.+..+|..+ |...+-+..++...+. -+...++..|++...+-.
T Consensus 161 --Pg~g~~g~-~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srksfg~~~~~~l~~t~~~~a~~~g~~~~iv~~ 230 (262)
T 1f6y_A 161 --PLILPANV-AQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACGLMSAIADA 230 (262)
T ss_dssp --CCCCCTTT-CTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred --CCCCcCCC-ChHHHHHHHHHHHHHHHHhCCCCCEEEeecCCcCCCCHHHHHHHHHHHHHHHHhCCeEEECc
Confidence 4541 211 2223457777777777755 6666666666644331 223345678888766544
No 297
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=94.22 E-value=0.33 Score=50.37 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
..+++++++.+++..+.|+.-+-+.+.+..+. ..+++++...++.+++. ++.++ ....+.++++.--++|.
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piS--IDT~~~~va~aAl~aGa 111 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWIS--VDTSKPEVIRESAKVGA 111 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEE--EECCCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEE--EeCCCHHHHHHHHHcCC
Confidence 46799999999999999999999977443222 44577788888888764 55554 44456666666666676
Q ss_pred CeEe-ccCCCCHHHHhcc----------cC---CCC--------------HHHHHHHHHHHHHcCCc---eeeeEEEecC
Q psy8199 787 DYYN-HNLDTSPKLYGDI----------IS---TRD--------------YENRLNTLKNVRNVGIN---ICCGGIIGLS 835 (965)
Q Consensus 787 ~~i~-i~~es~~~~~~~i----------~~---~~~--------------~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~ 835 (965)
+.|+ ++-..+++.++-+ +. +.+ .+...+.++.+.++|++ +...--+|++
T Consensus 112 ~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~ 191 (282)
T 1aj0_A 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcc
Confidence 6664 2211223332110 00 011 45556677778889985 5555445556
Q ss_pred CCHHHHHHHHHHHHhcC
Q psy8199 836 ESRDQRAELIFQLANLN 852 (965)
Q Consensus 836 et~ed~~~~l~~l~~l~ 852 (965)
.+.++-.++++.+.++.
T Consensus 192 k~~~~n~~ll~~l~~~~ 208 (282)
T 1aj0_A 192 KNLSHNYSLLARLAEFH 208 (282)
T ss_dssp CCHHHHHHHHHTGGGGG
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 77777777776666654
No 298
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=94.16 E-value=0.61 Score=58.71 Aligned_cols=211 Identities=10% Similarity=0.031 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccC-C-----CCcccHHHHHHHHHHHHhcCcEeEEec----CC------CCHH
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWR-E-----LKDRDLDNIENMICEVKKIGLETCLTL----GM------LNEN 776 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~-~-----~~~~~~~~~~~~~~~i~~~~~~i~~~~----~~------~~~e 776 (965)
++.++.++.++.+.+. |+..+-+.+|.. + +...+++++.++.+.+++..+...++. |. ..++
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~ 649 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKY 649 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHH
Confidence 7899999999999998 455566644321 1 122345555555555543322222221 22 2357
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-------C-CCHHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------S-ESRDQRAELIFQL 848 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-------~-et~ed~~~~l~~l 848 (965)
.++...++|++.+.+. .+. ...+....+++.+++.|..+...+.+.. + .+.+.+.+.++.+
T Consensus 650 ~i~~a~~~g~d~irif-~sl----------~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~ 718 (1165)
T 2qf7_A 650 FVRQAAKGGIDLFRVF-DCL----------NWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVEL 718 (1165)
T ss_dssp HHHHHHHHTCCEEEEE-CTT----------CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHH
T ss_pred HHHHHHhcCcCEEEEE-eeH----------HHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHH
Confidence 7999999999998775 331 1245667889999999987776665542 1 4778899999999
Q ss_pred HhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEe---
Q psy8199 849 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIF--- 924 (965)
Q Consensus 849 ~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~--- 924 (965)
.+.+ ++.|.+. .| ..-..|.++.+++...|..+ +..+.+-++=. .+.......|+.+||+.+=
T Consensus 719 ~~~G--a~~i~l~------DT----~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti 785 (1165)
T 2qf7_A 719 EKAG--AHIIAVK------DM----AGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAM 785 (1165)
T ss_dssp HHTT--CSEEEEE------ET----TCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred HHcC--CCEEEEe------Cc----cCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 9999 7776654 44 24467899999999998877 44455554321 2222334568899999542
Q ss_pred e--CCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 925 Y--GDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 925 ~--g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
. |+ .+++.+.++.+.+|+..|+.+.
T Consensus 786 ~GlGe---~~Gn~~le~vv~~L~~~g~~tg 812 (1165)
T 2qf7_A 786 DALSG---NTSQPCLGSIVEALSGSERDPG 812 (1165)
T ss_dssp GGGCS---BTSCCBHHHHHHHHTTSTTCCC
T ss_pred cccCC---CccchhHHHHHHHHHhcCCCcc
Confidence 2 23 3455578899999999888753
No 299
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=94.11 E-value=0.37 Score=51.86 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhcCcEeEE--ecCCC-----CHHHHHHHHHhCCC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGLETCL--TLGML-----NENQAYRLKKVGLD 787 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~~~~i~~--~~~~~-----~~e~l~~Lk~aG~~ 787 (965)
+.++..+.++.+.+.|+++++..--.. .....-.+++.++++..++.++.+.+ ++..+ +.+.++.|++.|++
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~ 118 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGAD 118 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 467788888889999999987654221 11123357777888888888988866 44444 33678899999999
Q ss_pred eEeccCCCCHHHHhccc
Q psy8199 788 YYNHNLDTSPKLYGDII 804 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~ 804 (965)
.+-+..--+.+...++.
T Consensus 119 gLRLD~Gf~~~eia~ls 135 (385)
T 1x7f_A 119 GIRLDVGFDGLTEAKMT 135 (385)
T ss_dssp EEEESSCCSSHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHh
Confidence 88877433444444443
No 300
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=94.06 E-value=0.89 Score=47.54 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC----------cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK----------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~----------~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
..+++++++.++++.+.|+.-+-+.+....+. ...++++...++.+++. ..+-+++...+.++++.-.+
T Consensus 45 ~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~-~~vpISIDT~~~~Va~aAl~ 123 (314)
T 3tr9_A 45 HLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKR-FPQLISVDTSRPRVMREAVN 123 (314)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHH-CCSEEEEECSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhh-CCCeEEEeCCCHHHHHHHHH
Confidence 46899999999999999999998865333221 12355577777777763 23445566678888888888
Q ss_pred hCCCeEe-ccCCCCHHHHhcc----------cCC---CC-------------HHHHHHHHHHHHHcCCc---eeeeEEEe
Q psy8199 784 VGLDYYN-HNLDTSPKLYGDI----------IST---RD-------------YENRLNTLKNVRNVGIN---ICCGGIIG 833 (965)
Q Consensus 784 aG~~~i~-i~~es~~~~~~~i----------~~~---~~-------------~~~~~~~i~~~~~~Gi~---v~~~~i~G 833 (965)
+|.+.|+ ++-...++.++-+ +.. .+ .+...+.++.+.++|++ +...--+|
T Consensus 124 aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G 203 (314)
T 3tr9_A 124 TGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFG 203 (314)
T ss_dssp HTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred cCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 8887764 3332234443321 111 11 23445667778889994 55444468
Q ss_pred ---cCCCHHHHHHHHHHHHhcC
Q psy8199 834 ---LSESRDQRAELIFQLANLN 852 (965)
Q Consensus 834 ---l~et~ed~~~~l~~l~~l~ 852 (965)
++.|.++-.++++.+.++.
T Consensus 204 ~~~F~Kt~~~n~~lL~~l~~l~ 225 (314)
T 3tr9_A 204 QGNYGKNVSENFYLLNKLPEFV 225 (314)
T ss_dssp SGGGCCCHHHHHHHHHTTHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHh
Confidence 7888887777776666654
No 301
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=93.99 E-value=0.49 Score=50.09 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-------ccHHHHHHHHHHHHhcCcEeEE--ecCCCCHHHHHHH---H
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKD-------RDLDNIENMICEVKKIGLETCL--TLGMLNENQAYRL---K 782 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-------~~~~~~~~~~~~i~~~~~~i~~--~~~~~~~e~l~~L---k 782 (965)
++.++.++.++.+.+.|+..+-+..+..|-.. .+.+. ++.++++ .+..+.. .......+.++.+ +
T Consensus 21 ~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~~e~-l~~i~~~--~~~~~~~L~r~~~~~~~dv~~~~~a~ 97 (320)
T 3dxi_A 21 FNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTPVSV-LKHLRNI--STKKIAIMLNEKNTTPEDLNHLLLPI 97 (320)
T ss_dssp CCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCHHH-HHHHHHH--CCSEEEEEEEGGGCCGGGHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccChHHH-HHHHhhc--cCCeEEEEecCCCCChhhHHHHHHhh
Confidence 88999999999999999999988754322110 11222 2333333 3444433 2221222334444 4
Q ss_pred HhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCC-CHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 783 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSE-SRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 783 ~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~e-t~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
++|++.+.+... .++.+...+.++.+++.|+.+...+.+.-+. +.++.+..+..+ +.+ .+.|.+.
T Consensus 98 ~~Gvd~~ri~~~-----------~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G--~~~i~l~ 163 (320)
T 3dxi_A 98 IGLVDMIRIAID-----------PQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKI--ADLFCMV 163 (320)
T ss_dssp TTTCSEEEEEEC-----------GGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGG-TTT--CSEEEEE
T ss_pred hcCCCEEEEEec-----------HHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCC--CCEEEEC
Confidence 478887766631 1237888999999999999987777653332 222233333221 234 5555433
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEe-----eCCccccCCCC
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIF-----YGDKLLTTDNT 935 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~-----~g~~~~t~~~~ 935 (965)
+| .....|.++.+++...|..+| ..+.+-+.-. .+.......|+.+||+.+= .|+ .+++.
T Consensus 164 ------Dt----~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~---~~GN~ 229 (320)
T 3dxi_A 164 ------DS----FGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGR---GAGNL 229 (320)
T ss_dssp ------CT----TSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS---TTCBC
T ss_pred ------cc----cCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCC---cccch
Confidence 44 233578999999999998886 3344443221 1222334568899999542 122 34445
Q ss_pred CChhhHHHHHH
Q psy8199 936 KTNDDSKLLKK 946 (965)
Q Consensus 936 ~~~~~~~~~~~ 946 (965)
..++...+|+.
T Consensus 230 ~~E~lv~~L~~ 240 (320)
T 3dxi_A 230 KMELLLTYLNK 240 (320)
T ss_dssp BHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 67888888887
No 302
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=93.91 E-value=2.1 Score=43.69 Aligned_cols=206 Identities=13% Similarity=0.083 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
+..+.++.+.+.|+..+.+.+.... ........+.++.+++ .++.+....+..+.+.++.+.++|++.+.++-..
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~--~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~-- 107 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISAT--HEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA-- 107 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSS--TTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc--ccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH--
Confidence 3444555666779998888754321 1234456677888876 5888999999999999999999999999998533
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--------EEecCCC---HHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGG--------IIGLSES---RDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--------i~Gl~et---~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
+.. ++...++.+.....-+.+.... +.=.|.. ..+..+.++.+.+++ ...+.++... .
T Consensus 108 --l~~------p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~-~ 176 (252)
T 1ka9_F 108 --VRR------PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSMD-R 176 (252)
T ss_dssp --HHC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEETT-T
T ss_pred --HhC------cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcC--CCEEEEeccc-C
Confidence 111 1122223333221112222221 1112321 123455566666777 6655544211 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
.|+. ..++.+ .++..+... +..+-...+-.. ..+... ++.+||+++++|..++.. ..++.+..+.+++
T Consensus 177 ~g~~----~g~~~~----~i~~l~~~~-~ipvia~GGI~~-~~d~~~-~~~~Gadgv~vgsal~~~-~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 177 DGTK----EGYDLR----LTRMVAEAV-GVPVIASGGAGR-MEHFLE-AFQAGAEAALAASVFHFG-EIPIPKLKRYLAE 244 (252)
T ss_dssp TTTC----SCCCHH----HHHHHHHHC-SSCEEEESCCCS-HHHHHH-HHHTTCSEEEESHHHHTT-SSCHHHHHHHHHH
T ss_pred CCCc----CCCCHH----HHHHHHHHc-CCCEEEeCCCCC-HHHHHH-HHHCCCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 2321 112322 222333333 222323322222 134443 457899999999976444 3368888888888
Q ss_pred cCCCc
Q psy8199 947 LGINT 951 (965)
Q Consensus 947 ~g~~~ 951 (965)
.|+..
T Consensus 245 ~~~~~ 249 (252)
T 1ka9_F 245 KGVHV 249 (252)
T ss_dssp TTCCB
T ss_pred CCCCc
Confidence 88754
No 303
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=93.88 E-value=0.39 Score=49.96 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+.+.+++.++++.+.|+.-+-+.+....+ ....++++...++.+++.++.++ +...+.++++.--++|.+
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiS--IDT~~~~Va~aAl~aGa~ 125 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVS--VDTRKPEVAEEALKLGAH 125 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEE--EECSCHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEE--EECCCHHHHHHHHHhCCC
Confidence 4688999999999999999999997633221 24567888999998886554443 333445555554445544
Q ss_pred -----------------------eEeccCC-CCHHHHhcccC-CC----CHHHHHHHHHHHHHcCCc-eeeeEEEecCCC
Q psy8199 788 -----------------------YYNHNLD-TSPKLYGDIIS-TR----DYENRLNTLKNVRNVGIN-ICCGGIIGLSES 837 (965)
Q Consensus 788 -----------------------~i~i~~e-s~~~~~~~i~~-~~----~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl~et 837 (965)
.+.+-.+ ..++.....-. .. -.+...+.++.+.++|++ +...--+|++.|
T Consensus 126 iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt 205 (294)
T 2dqw_A 126 LLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKL 205 (294)
T ss_dssp EEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCC
T ss_pred EEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccC
Confidence 4433332 21111110000 00 023445667778889996 222222244588
Q ss_pred HHHHHHHHHHHHhcC
Q psy8199 838 RDQRAELIFQLANLN 852 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~ 852 (965)
.++-.++++.++++.
T Consensus 206 ~~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 206 LEHNLALLRRLDEIV 220 (294)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887777777777765
No 304
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=93.83 E-value=0.62 Score=47.90 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeecc-CCCCcc---------------cHHHHHHHHHHHHhc--CcEeEEecCC-----
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAW-RELKDR---------------DLDNIENMICEVKKI--GLETCLTLGM----- 772 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~-~~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~~~~~----- 772 (965)
+.+...+.++.+.+.|++-+.+.-.. +|..+. .++.+.++++++++. .+.+.+-...
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~ 109 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFA 109 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 46778888888889999988886321 122222 134667888888863 4444332110
Q ss_pred -CCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 773 -LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 773 -~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
-.+..++.++++|++.+.+. +-.+++..+..+.++++|+... +++ -+.|.++++. .+.+.
T Consensus 110 ~g~e~f~~~~~~aGvdgvii~-------------Dlp~ee~~~~~~~~~~~gl~~i--~li-aP~t~~eri~---~i~~~ 170 (267)
T 3vnd_A 110 NGIDEFYTKAQAAGVDSVLIA-------------DVPVEESAPFSKAAKAHGIAPI--FIA-PPNADADTLK---MVSEQ 170 (267)
T ss_dssp HCHHHHHHHHHHHTCCEEEET-------------TSCGGGCHHHHHHHHHTTCEEE--CEE-CTTCCHHHHH---HHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEeC-------------CCCHhhHHHHHHHHHHcCCeEE--EEE-CCCCCHHHHH---HHHHh
Confidence 12778999999999998775 2223456777888999999752 233 3455444433 33444
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
. ..++.+....+.-|+. ...+ .+....+...|...+ ..+-+. -+--..+....++.+|||++++|..+
T Consensus 171 ~--~gfvY~vS~~GvTG~~--~~~~---~~~~~~v~~vr~~~~-~pv~vG--fGI~~~e~~~~~~~~gADgvVVGSai 238 (267)
T 3vnd_A 171 G--EGYTYLLSRAGVTGTE--SKAG---EPIENILTQLAEFNA-PPPLLG--FGIAEPEQVRAAIKAGAAGAISGSAV 238 (267)
T ss_dssp C--CSCEEESCCCCCC-------------CHHHHHHHHHTTTC-CCEEEC--SSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred C--CCcEEEEecCCCCCCc--cCCc---HHHHHHHHHHHHhcC-CCEEEE--CCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 4 3455554344433432 1111 234555555566542 223333 32212333344688999999999865
No 305
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=93.72 E-value=2.8 Score=41.49 Aligned_cols=166 Identities=12% Similarity=0.140 Sum_probs=97.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEE-ecCCCCHHHHHHHHHhCCCeEe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCL-TLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+..++++..+.++.+.+.|+..+.+.... + .. .+.++.+++ .+..+.+ -.+..+.+.++...++|++.+.
T Consensus 14 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~~-~---~~----~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~ 85 (212)
T 2v82_A 14 RGITPDEALAHVGAVIDAGFDAVEIPLNS-P---QW----EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIV 85 (212)
T ss_dssp TTCCHHHHHHHHHHHHHHTCCEEEEETTS-T---TH----HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC-h---hH----HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEE
Confidence 34578999999999999999999885442 1 11 234444443 3433333 1344578899999999999997
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
++.. + .+.++.+++.|.++. +| -.|.++.. ...+.+ .+.+.++ | |.
T Consensus 86 ~~~~-~----------------~~~~~~~~~~g~~~~----~g-~~t~~e~~----~a~~~G--~d~v~v~---~---t~ 131 (212)
T 2v82_A 86 TPNI-H----------------SEVIRRAVGYGMTVC----PG-CATATEAF----TALEAG--AQALKIF---P---SS 131 (212)
T ss_dssp CSSC-C----------------HHHHHHHHHTTCEEE----CE-ECSHHHHH----HHHHTT--CSEEEET---T---HH
T ss_pred eCCC-C----------------HHHHHHHHHcCCCEE----ee-cCCHHHHH----HHHHCC--CCEEEEe---c---CC
Confidence 5421 1 234566777887653 34 35666643 334567 7777652 2 11
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
+.+ .+.+...+..++ +..+-..++-. ..+.. ..+.+||+++.+|..+...
T Consensus 132 -----~~g----~~~~~~l~~~~~~~ipvia~GGI~--~~~i~-~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 132 -----AFG----PQYIKALKAVLPSDIAVFAVGGVT--PENLA-QWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp -----HHC----HHHHHHHHTTSCTTCEEEEESSCC--TTTHH-HHHHHTCSEEEECTTTCCT
T ss_pred -----CCC----HHHHHHHHHhccCCCeEEEeCCCC--HHHHH-HHHHcCCCEEEEChHHhCC
Confidence 112 233333444555 34344444332 23333 4477999999999876443
No 306
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=93.48 E-value=4.4 Score=42.33 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHhc--CcEeEEecC-----------C------
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKI--GLETCLTLG-----------M------ 772 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~-----------~------ 772 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-...+.+.|.+++..|++. ++-+.++.| .
T Consensus 44 PvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~TTg~gg~~~g~~~~p~~~~~~ 123 (316)
T 3c6c_A 44 PITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKALPE 123 (316)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCccccccCcccCccccccc
Confidence 3899999999999999999988885433 123456789999999999964 666666555 1
Q ss_pred ----CCHHHHHHHHHhCCCeEeccCCC-CH--HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHH
Q psy8199 773 ----LNENQAYRLKKVGLDYYNHNLDT-SP--KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 845 (965)
Q Consensus 773 ----~~~e~l~~Lk~aG~~~i~i~~es-~~--~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l 845 (965)
..++.+..+.+...+..+++.-| +- ..-..+. ..+++...+..+.+++.|++... .+| +..++.. +
T Consensus 124 ~~l~~~eeR~~~~~~~~Pe~aSl~~Gs~Nf~~~~~~~v~-~n~~~~i~~~~~~~~e~Gv~pE~-e~f----d~g~l~~-~ 196 (316)
T 3c6c_A 124 SDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFVY-LNTTRTLRAMARRFQELGIKPEL-EVF----SPGDILF-G 196 (316)
T ss_dssp CEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEEE-CCCHHHHHHHHHHHHHHTCEEEE-EES----SHHHHHH-H
T ss_pred cccCCHHHHHHHHHhcCCCeEEeccccccccCCCCceee-cCCHHHHHHHHHHHHHcCCeEEE-EEE----CHHHHHH-H
Confidence 24556666666678888777766 41 1101122 46788999999999999998764 344 3333433 4
Q ss_pred HHHHhcCC--CCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 846 FQLANLNP--YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 846 ~~l~~l~~--~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
..+.+-+. .+..+.+. + |-+. . .+.+++.+.-++.. +|.--.-..++.....-.+...++..|-+.-
T Consensus 197 ~~l~~~Gll~~p~~~~~v--l---Gv~~-g-~p~~p~~L~~~~~~----lp~~~~wsv~g~Gr~q~p~~~~A~~~GGhvR 265 (316)
T 3c6c_A 197 KQLIEEGLIDGVPLFQMV--L---GVLW-G-APASTETMIYQRNL----IPANAQWAAFGIGRDQMPMMAQAALLGGNVR 265 (316)
T ss_dssp HHHHHTTCSCSSCEEEEE--C---SCTT-S-CCSCHHHHHHHHTT----SCTTSEEEEECCGGGHHHHHHHHHHHTCBEE
T ss_pred HHHHHcCCCCCCceEEEE--E---ecCC-C-CCCCHHHHHHHHHh----cCCCCeEEEEecCcchHHHHHHHHHcCCCeE
Confidence 44444442 12222221 1 3211 1 33567776655432 4432121111112111124445777888742
Q ss_pred -eeCCccccCCCC---C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 924 -FYGDKLLTTDNT---K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 924 -~~g~~~~t~~~~---~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
=.++++.-..|. | +++..++++.+|+.++. .+|.++.|
T Consensus 266 VGlEDnl~~~~G~~AsNa~lV~~a~~i~~~lGr~vAT-p~eAR~iL 310 (316)
T 3c6c_A 266 VGLEDNLYLSRGVFATNGQLVERARTVIEHLGMSVAT-PDEARDIM 310 (316)
T ss_dssp ESTTTCCEEETTEECCHHHHHHHHHHHHHHTTCEECC-HHHHHHHH
T ss_pred EccccccCCCCCcCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 234554433331 2 44667778899998754 56666554
No 307
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=93.36 E-value=0.94 Score=46.11 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
+..+.++.+.+.|+..+++.+-....... ... +.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++.+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~--~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~-- 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG--SNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAA-- 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC--CCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC--ChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchH--
Confidence 44555667778899999997521111011 112 66666665 6889999999999999999999999999998744
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHH-cCCceeee------EEEecC--CCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRN-VGINICCG------GIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~------~i~Gl~--et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+.. ++...+.++.+.+ ..+.+.+. -+.-.| ++..+..+.++.+.+.+ .+.+.++...+ .+
T Consensus 107 --l~~------p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~-~~ 175 (244)
T 2y88_A 107 --LEN------PQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEG--CSRFVVTDITK-DG 175 (244)
T ss_dssp --HHC------HHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTT--CCCEEEEETTT-TT
T ss_pred --hhC------hHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCC--CCEEEEEecCC-cc
Confidence 111 2233333333321 11112211 111112 11114566667777788 77776664333 12
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc---CccEEeeCCccccC
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GANSIFYGDKLLTT 932 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~---Gan~~~~g~~~~t~ 932 (965)
+ ...+..+.+.++. ... +..+-..++-.. ..+.. .++.+ ||+++++|..++..
T Consensus 176 ~----~~g~~~~~~~~l~----~~~-~ipvia~GGI~~-~~d~~-~~~~~~~~Gad~v~vG~al~~~ 231 (244)
T 2y88_A 176 T----LGGPNLDLLAGVA----DRT-DAPVIASGGVSS-LDDLR-AIATLTHRGVEGAIVGKALYAR 231 (244)
T ss_dssp T----TSCCCHHHHHHHH----TTC-SSCEEEESCCCS-HHHHH-HHHTTGGGTEEEEEECHHHHTT
T ss_pred c----cCCCCHHHHHHHH----HhC-CCCEEEECCCCC-HHHHH-HHHhhccCCCCEEEEcHHHHCC
Confidence 2 1122333333322 112 222323322221 13333 44667 99999999876543
No 308
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=93.34 E-value=0.48 Score=49.39 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+.+.+++.++++.+.|+.-+-+.+....+. ...++++...++.+++.++. +++...+.++++.-.++|.+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vp--iSIDT~~~~Va~aAl~aGa~ 119 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVP--LSIDTYKPAVMRAALAAGAD 119 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSC--EEEECCCHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCe--EEEECCCHHHHHHHHHcCCC
Confidence 46889999999999999999999976332211 34477788888888765444 45566788888888888887
Q ss_pred eEe-ccCCCCHHHHhcccCC-------------CC---------------HHHHHHHHHHHHHcCCc---eeeeEEEecC
Q psy8199 788 YYN-HNLDTSPKLYGDIIST-------------RD---------------YENRLNTLKNVRNVGIN---ICCGGIIGLS 835 (965)
Q Consensus 788 ~i~-i~~es~~~~~~~i~~~-------------~~---------------~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~ 835 (965)
.|+ ++-+.+++.++-+... .+ .+...+.++.+.++|++ +...--+|.+
T Consensus 120 iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~ 199 (294)
T 2y5s_A 120 LINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFG 199 (294)
T ss_dssp EEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred EEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCccc
Confidence 774 3322244443221110 01 23344556667778874 4444444555
Q ss_pred CCH-HHHHHHHHHHHhcC
Q psy8199 836 ESR-DQRAELIFQLANLN 852 (965)
Q Consensus 836 et~-ed~~~~l~~l~~l~ 852 (965)
.|. ++-.++++.+.++.
T Consensus 200 kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 200 KAVVDDNYALLAALPDTA 217 (294)
T ss_dssp SCTTHHHHHHHHTGGGGS
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 666 66666666666554
No 309
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=93.31 E-value=7.5 Score=39.97 Aligned_cols=230 Identities=11% Similarity=0.136 Sum_probs=133.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhc--CcEeEEecCCC----CHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML----NENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~----~~e~l~~Lk~aG~ 786 (965)
..+++||.+.+.+..+.|+.-+++-.=.. .-...+.+.|.+++..|++. ++-+.++.|.. .++.+..+ +...
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~P 108 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALKP 108 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcCC
Confidence 38899999999999999988887754321 22356789999999999963 66666655433 33444444 5667
Q ss_pred CeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCC---CCceeecc
Q psy8199 787 DYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPY---PESVPINN 862 (965)
Q Consensus 787 ~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~---~~~i~~~~ 862 (965)
+..+++.-| +-. ..+. ..+++...+.++.+++.|++... .+| +..++.. +..+.+-+.. +..+.+.
T Consensus 109 e~asl~~gs~Nf~--~~v~-~n~~~~~~~~~~~~~e~Gv~pE~-e~f----d~g~l~~-~~~l~~~Gl~p~~p~~~~~V- 178 (282)
T 2y7e_A 109 EMATLNAGTLNFG--DDIF-INHPADIIRLAEAFKQYNVVPEV-EVY----ESGMVDA-VARLIKKGIITQNPLHIQFV- 178 (282)
T ss_dssp SEEEEECCCEEET--TEEE-CCCHHHHHHHHHHHHHTTCEEEE-EEC----SHHHHHH-HHHHHHTTSCCCSSCEEEEE-
T ss_pred CEEEecccccccc--cccc-cCCHHHHHHHHHHHHHcCCeEEE-EEE----CHHHHHH-HHHHHHcCCCCCCCeEEEEE-
Confidence 888777766 411 1122 46789999999999999998764 344 3344444 4444444421 1222211
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE-eeCCccccCCCC----C-
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI-FYGDKLLTTDNT----K- 936 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~-~~g~~~~t~~~~----~- 936 (965)
+=.++ -.+.+++.+.-++....--.|+... ..++.....-.+...++..|-+.- =.+|++.-..|. |
T Consensus 179 -lGv~~-----g~~~~~~~L~~~~~~lp~~~~~~~w-sv~g~Gr~q~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa 251 (282)
T 2y7e_A 179 -LGVPG-----GMSGKPKNLMYMMEHLKEEIPTATW-AVAGIGRWHIPTSLIAMVTGGHIRCGFEDNIFYHKGVIAESNA 251 (282)
T ss_dssp -ECCTT-----SCCCCHHHHHHHHHHHHHHSTTCEE-EEEECGGGHHHHHHHHHTTTCEEEESTTTCCEEETTEECSCHH
T ss_pred -EecCC-----CCCCCHHHHHHHHHhcccccCCCeE-EEEecCcchHHHHHHHHHcCCCeEEccccccCCCCCCCCCCHH
Confidence 11222 1346777777776543221123321 111122111124445778888832 234554444441 2
Q ss_pred --ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 937 --TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 937 --~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+++..++++++|+.+ -+.+|.++.|
T Consensus 252 ~lV~~~~~i~~~lgr~v-Atp~eAR~iL 278 (282)
T 2y7e_A 252 QLVARLARIAKEIGRPL-ATPEQAREIL 278 (282)
T ss_dssp HHHHHHHHHHHHHTCCB-CCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCC-CCHHHHHHHh
Confidence 446677788999987 4555555544
No 310
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=93.30 E-value=2.4 Score=48.83 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-----CcEeEEecCCCCH----HHHHHHHHh
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNE----NQAYRLKKV 784 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-----~~~i~~~~~~~~~----e~l~~Lk~a 784 (965)
.++.++-++.++.+.+.|++.|-..... ....+.+ .++.+.+. +..++.-.-. .+ ..++.++.+
T Consensus 89 ~~s~eeKl~Ia~~L~~lGVd~IEaGfP~--asp~D~e----~v~~i~~~~l~~~~~~i~aL~r~-~~~did~a~eal~~a 161 (644)
T 3hq1_A 89 PMSPARKRRMFDLLVRMGYKEIEVGFPS--ASQTDFD----FVREIIEQGAIPDDVTIQVLTQC-RPELIERTFQACSGA 161 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECTT--TCHHHHH----HHHHHHHTTCSCTTCEEEEEEES-CHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC--CChhHHH----HHHHHHhcCCCCCCeEEEEEecC-CHhhHHHHHHHHhcC
Confidence 4899999999999999999998874421 1122233 34444432 4444332211 23 345567788
Q ss_pred CCCeEeccCCCCHHHHhcccCCCCHHHHH----HHHHHHHHcCC---ceeeeEEEecC----CCHHHHHHHHHHHHhcCC
Q psy8199 785 GLDYYNHNLDTSPKLYGDIISTRDYENRL----NTLKNVRNVGI---NICCGGIIGLS----ESRDQRAELIFQLANLNP 853 (965)
Q Consensus 785 G~~~i~i~~es~~~~~~~i~~~~~~~~~~----~~i~~~~~~Gi---~v~~~~i~Gl~----et~ed~~~~l~~l~~l~~ 853 (965)
|.+.+.+.+-+++-..+... +.+.++.+ ++++.+++.+- .+..++.|+.. -..+-+.+.++.+.+.+.
T Consensus 162 ~~~~Vhif~stSd~h~~~~l-~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~ 240 (644)
T 3hq1_A 162 PRAIVHFYNSTSILQRRVVF-RANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIA 240 (644)
T ss_dssp SEEEEEEEEECCHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcC
Confidence 99999998888765444332 34455544 44555666542 22334555442 466777788888887531
Q ss_pred -CCCc-eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---Cceeccccccccch--hhHHHHhhcCccEEe--
Q psy8199 854 -YPES-VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGE--TTQAFCFLAGANSIF-- 924 (965)
Q Consensus 854 -~~~~-i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~---~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-- 924 (965)
..+. +.++ .|.| ....+|.++.+++...+..+|+ ..+.+-+. +..+. .....|+.+||+.+=
T Consensus 241 ~Gad~~~~I~----LpDT----vG~~tP~~~~~li~~l~~~v~~~~~v~l~vH~H-ND~GlAvANslaAv~AGA~~Vdgt 311 (644)
T 3hq1_A 241 PTPERPIIFN----LPAT----VEMTTPNVYADSIEWMSRNLANRESVILSLHPH-NDRGTAVAAAELGFAAGADRIEGC 311 (644)
T ss_dssp CCSSSCEEEE----EEES----SCCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEB
T ss_pred CCCCceeEEE----ecCC----CcccCHHHHHHHHHHHHHhcccccCceEEEecC-CCCCcHHHHHHHHHHhCCCEEEec
Confidence 1331 2222 2355 2456889999999999888875 22333332 23322 334568899999642
Q ss_pred -e--CCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 925 -Y--GDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 925 -~--g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
. |+ .+++...++...+|...|+.+.
T Consensus 312 i~G~GE---RaGNa~LE~lv~~L~~~Gi~tg 339 (644)
T 3hq1_A 312 LFGNGE---RTGNVCLVTLGLNLFSRGVDPQ 339 (644)
T ss_dssp GGGCSS---TTCBCBHHHHHHHHHTTTCCCS
T ss_pred CCCCCc---cccCccHHHHHHHHHhcccCCc
Confidence 2 23 3455567888888888888754
No 311
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=93.13 E-value=1.3 Score=45.08 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCC-CcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWREL-KDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS 796 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~-~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~ 796 (965)
+..+.++.+.+.|++.+++..-.... .. ... +.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++.++
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~- 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA- 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH-
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchH-
Confidence 44555667778899999987521110 11 112 56666665 6889999999999999999999999999998754
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHH-cCCceeee--EEEecC--CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRN-VGINICCG--GIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~--~i~Gl~--et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
+.. ++...+.++.... ..+.+.+. .+.=.| ++..+..+.++.+.+++ .+.|.++...+ .++.
T Consensus 108 ---l~~------p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~-~~~~- 174 (244)
T 1vzw_A 108 ---LET------PEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEG--CARYVVTDIAK-DGTL- 174 (244)
T ss_dssp ---HHC------HHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTT--CCCEEEEEC--------
T ss_pred ---hhC------HHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCC--CCEEEEeccCc-cccc-
Confidence 111 1223333333221 11112211 111122 11114455566677788 77776664433 1221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc---CccEEeeCCccccCCCCCChhhHHH
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GANSIFYGDKLLTTDNTKTNDDSKL 943 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~---Gan~~~~g~~~~t~~~~~~~~~~~~ 943 (965)
.....+.+.++. ... +..+-..++-.. ..+. ..++.+ ||+++++|..++... .+..+....
T Consensus 175 ---~g~~~~~~~~i~----~~~-~ipvia~GGI~~-~~d~-~~~~~~~~~Gadgv~vG~al~~~~-~~~~~~~~~ 238 (244)
T 1vzw_A 175 ---QGPNLELLKNVC----AAT-DRPVVASGGVSS-LDDL-RAIAGLVPAGVEGAIVGKALYAKA-FTLEEALEA 238 (244)
T ss_dssp ----CCCHHHHHHHH----HTC-SSCEEEESCCCS-HHHH-HHHHTTGGGTEEEEEECHHHHTTS-SCHHHHHHH
T ss_pred ---CCCCHHHHHHHH----Hhc-CCCEEEECCCCC-HHHH-HHHHhhccCCCceeeeeHHHHcCC-CCHHHHHHH
Confidence 112333333332 222 232333332221 1333 345777 999999998764432 244454443
No 312
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=92.63 E-value=0.93 Score=44.96 Aligned_cols=188 Identities=13% Similarity=0.165 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCC--CHHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML--NENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~--~~e~l~~Lk~aG~~~i~ 790 (965)
.+.++-++.++.+. .|+.-+-+.. |+ .+..=.+.++.+++. +..+..+.... .+..++.++++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~G~---p~---~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~ 82 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEVGT---PF---LIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVT 82 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECH---HH---HHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhh-cCccEEEeCc---HH---HHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEE
Confidence 46788888888774 4665444421 21 022234566666653 55665543222 23448999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec--CCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+..+.. .+...+.++.+++.|+++.. .+ .+|. .+.++.+.+.+ .+.|.+. +|
T Consensus 83 v~~~~~------------~~~~~~~~~~~~~~g~~~~v----~~~~~~t~---~~~~~~~~~~g--~d~i~v~-----~g 136 (211)
T 3f4w_A 83 VLGVTD------------VLTIQSCIRAAKEAGKQVVV----DMICVDDL---PARVRLLEEAG--ADMLAVH-----TG 136 (211)
T ss_dssp EETTSC------------HHHHHHHHHHHHHHTCEEEE----ECTTCSSH---HHHHHHHHHHT--CCEEEEE-----CC
T ss_pred EeCCCC------------hhHHHHHHHHHHHcCCeEEE----EecCCCCH---HHHHHHHHHcC--CCEEEEc-----CC
Confidence 875432 23456777888888876532 32 3444 34456667777 7777554 22
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
..-...++.+ .+.+...|..+++..+-+..+-. .+.-..++.+||+.+++|..+.... ++.+..+.+
T Consensus 137 ~~g~~~~~~~----~~~i~~l~~~~~~~~i~~~gGI~---~~~~~~~~~~Gad~vvvGsai~~~~--d~~~~~~~l 203 (211)
T 3f4w_A 137 TDQQAAGRKP----IDDLITMLKVRRKARIAVAGGIS---SQTVKDYALLGPDVVIVGSAITHAA--DPAGEARKI 203 (211)
T ss_dssp HHHHHTTCCS----HHHHHHHHHHCSSCEEEEESSCC---TTTHHHHHTTCCSEEEECHHHHTCS--SHHHHHHHH
T ss_pred CcccccCCCC----HHHHHHHHHHcCCCcEEEECCCC---HHHHHHHHHcCCCEEEECHHHcCCC--CHHHHHHHH
Confidence 1100111112 23334445566665454554442 3333455789999999998664332 344444433
No 313
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=92.58 E-value=0.52 Score=49.56 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC-----cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCe
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK-----DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~ 788 (965)
+.+.+++++.++++.+.|+.-+-+.+....+. ...++++...++.+++....+-+++...+.++++.-.++|.+.
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~~~~VaeaAl~aGa~i 140 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADL 140 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEECSCHHHHHHHHHHTCCE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCHHHHHHHHHhCCCE
Confidence 46789999999999999999999975332111 3345667777888876422344456667888888888888876
Q ss_pred Ee
Q psy8199 789 YN 790 (965)
Q Consensus 789 i~ 790 (965)
|+
T Consensus 141 IN 142 (318)
T 2vp8_A 141 IN 142 (318)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 314
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=92.57 E-value=2.5 Score=43.65 Aligned_cols=186 Identities=15% Similarity=0.092 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcc---------------cHHHHHHHHHHHHhc--CcEeEEec--C----
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-ELKDR---------------DLDNIENMICEVKKI--GLETCLTL--G---- 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~~~--~---- 771 (965)
+.++..+.++.+.+.|+..+.+..... |..+. .++...+.++.+++. .+.+.+-. .
T Consensus 29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~ 108 (268)
T 1qop_A 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (268)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHH
Confidence 457788888899999999999854221 21111 134466788888864 44443311 1
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
.-.++.++.++++|++.+.+.-.+ .++..+.++.+++.|+... .++ -+.|..++++.+ .+.
T Consensus 109 ~g~~~~~~~~~~aGadgii~~d~~-------------~e~~~~~~~~~~~~g~~~i--~l~-~p~t~~~~i~~i---~~~ 169 (268)
T 1qop_A 109 NGIDAFYARCEQVGVDSVLVADVP-------------VEESAPFRQAALRHNIAPI--FIC-PPNADDDLLRQV---ASY 169 (268)
T ss_dssp TCHHHHHHHHHHHTCCEEEETTCC-------------GGGCHHHHHHHHHTTCEEE--CEE-CTTCCHHHHHHH---HHH
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCC-------------HHHHHHHHHHHHHcCCcEE--EEE-CCCCCHHHHHHH---Hhh
Confidence 112688999999999987775222 2445667788899998752 232 233444333322 233
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
. ..++.+... .|+ .........+..+.++..|... +..+-+..+- ...+....++.+|||++++|..++
T Consensus 170 ~--~g~v~~~s~---~G~--tG~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI--~t~e~~~~~~~agAD~vVVGSai~ 238 (268)
T 1qop_A 170 G--RGYTYLLSR---SGV--TGAENRGALPLHHLIEKLKEYH-AAPALQGFGI--SSPEQVSAAVRAGAAGAISGSAIV 238 (268)
T ss_dssp C--CSCEEEESS---SSC--CCSSSCC--CCHHHHHHHHHTT-CCCEEEESSC--CSHHHHHHHHHTTCSEEEECHHHH
T ss_pred C--CCcEEEEec---CCc--CCCccCCCchHHHHHHHHHhcc-CCcEEEECCC--CCHHHHHHHHHcCCCEEEEChHHh
Confidence 3 233422211 232 0111111122334444445544 3323333322 224444455889999999998764
No 315
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=92.53 E-value=0.32 Score=49.17 Aligned_cols=192 Identities=8% Similarity=-0.028 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEE--EeeccC-CCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKSDGATRFC--MGAAWR-ELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~--l~~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
+...+.++++.+.+.|++.++ +..|.+ |...... +.++.+++. ...+.+-.. -.+..++.+.++|.+.+.+
T Consensus 24 D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~----~~v~~lr~~~~~DvhLMv~-~p~~~i~~~~~aGAd~itv 98 (237)
T 3cu2_A 24 NWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGA----IGIKYFPTHCFKDVHLMVR-NQLEVAKAVVANGANLVTL 98 (237)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCT----HHHHTSCTTSEEEEEEECS-CHHHHHHHHHHTTCSEEEE
T ss_pred CcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhH----HHHHHHhhhCCCCeEEEEE-CHHHHHHHHHHcCCCEEEE
Confidence 444566667777788888654 445543 2222222 455555542 113333222 1267899999999999888
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHc---------CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNV---------GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~---------Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
-.|+.+ ...++++.+++. |..+...+ -+.|..+.++.+ .+ + .+.|.++.
T Consensus 99 H~ea~~-------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~l---~p~Tp~~~l~~~---l~-~--~D~vlvMs 156 (237)
T 3cu2_A 99 QLEQYH-------------DFALTIEWLAKQKTTYANQVYPVLIGACL---CPETPISELEPY---LD-Q--IDVIQLLT 156 (237)
T ss_dssp ETTCTT-------------SHHHHHHHHTTCEEEETTEEEECEEEEEE---CTTSCGGGGTTT---TT-T--CSEEEEES
T ss_pred ecCCcc-------------cHHHHHHHHHhcccccccccCCceEEEEE---eCCChHHHHHHH---hh-c--Cceeeeee
Confidence 877642 124667777877 65553322 235554333211 11 2 67776664
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhh--cCccEEeeCCccccCCCCC
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFL--AGANSIFYGDKLLTTDNTK 936 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~--~Gan~~~~g~~~~t~~~~~ 936 (965)
.. ||..=. .-....++.++..|.+.+ +..|-+.++-+ .+....+.. +|||.+++|..+... +
T Consensus 157 v~--pgfggq----~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~---~~~~~~~~~~~aGad~~VvGSaIf~~---d 224 (237)
T 3cu2_A 157 LD--PRNGTK----YPSELILDRVIQVEKRLGNRRVEKLINIDGSMT---LELAKYFKQGTHQIDWLVSGSALFSG---E 224 (237)
T ss_dssp EE--TTTTEE----CCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC---HHHHHHHHHSSSCCCCEEECGGGGSS---C
T ss_pred ec--cCcCCe----ecChhHHHHHHHHHHHHHhcCCCceEEEECCcC---HHHHHHHHHhCCCCcEEEEeeHHhCC---C
Confidence 44 444311 124556666666676664 23454554432 334445688 999999999876432 4
Q ss_pred ChhhHHHHHH
Q psy8199 937 TNDDSKLLKK 946 (965)
Q Consensus 937 ~~~~~~~~~~ 946 (965)
+.+..+.+++
T Consensus 225 ~~~~~~~l~~ 234 (237)
T 3cu2_A 225 LKTNLKVWKS 234 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665543
No 316
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=92.53 E-value=0.98 Score=46.70 Aligned_cols=207 Identities=17% Similarity=0.095 Sum_probs=93.0
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHH
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~ 798 (965)
..+.++.+.+.|+..+.+.+-....... ....+.++.+++ .++++.+..+..+.+.++.+.++|++.+.++-...+
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~--g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~- 108 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKS--GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHF- 108 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSS--CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC---
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCC--cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHh-
Confidence 3444555567799999997643211111 113456666665 578888888888889999999999999998843210
Q ss_pred HHhcccCCCCHHHHHHHHHHHH--HcCCceeee--------EEEecCCC---HHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 799 LYGDIISTRDYENRLNTLKNVR--NVGINICCG--------GIIGLSES---RDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~--~~Gi~v~~~--------~i~Gl~et---~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
+..+++...+.++... ...+.+... .+.-.+.. ..+..+.++.+.+++ ...|.++...
T Consensus 109 ------~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~t~~~- 179 (266)
T 2w6r_A 109 ------REIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRG--AGEILLTSID- 179 (266)
T ss_dssp ----------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETT-
T ss_pred ------CCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcC--CCEEEEEeec-
Confidence 0001122222222221 000111111 12212321 012344455666788 6776554221
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
..|+. ..++.+ .+...+... +..+-...+-.. ..+... ++.+||+++++|..++..+ ....+..+.++
T Consensus 180 ~~g~~----~g~~~~----~i~~l~~~~-~ipvia~GGI~~-~ed~~~-~~~~Gadgv~vgsal~~~~-~~~~~~~~~l~ 247 (266)
T 2w6r_A 180 RDGTK----SGYDTE----MIRFVRPLT-TLPIIASGGAGK-MEHFLE-AFLAGADAALAASVFHFRE-IDMRELKEYLK 247 (266)
T ss_dssp TTTTC----SCCCHH----HHHHHGGGC-CSCEEEESCCCS-HHHHHH-HHHHTCSEEEESTTTC---------------
T ss_pred CCCCc----CCCCHH----HHHHHHHHc-CCCEEEeCCCCC-HHHHHH-HHHcCCHHHHccHHHHcCC-CCHHHHHHHHH
Confidence 12332 112322 222223222 222323322222 134443 4578999999999765443 35778888888
Q ss_pred HcCCC
Q psy8199 946 KLGIN 950 (965)
Q Consensus 946 ~~g~~ 950 (965)
+.|+.
T Consensus 248 ~~g~~ 252 (266)
T 2w6r_A 248 KHGVN 252 (266)
T ss_dssp -----
T ss_pred HCCCc
Confidence 88874
No 317
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=92.48 E-value=3.9 Score=40.20 Aligned_cols=188 Identities=19% Similarity=0.108 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCC--HHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLN--ENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~--~e~l~~Lk~aG~~~i~ 790 (965)
.+.++.++.++.+.. |+..+.+..+.. ...=.+.++.+++. +..+.+.....+ +..++.+.++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~-~v~~iev~~~~~------~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~ 82 (207)
T 3ajx_A 10 LSTEAALELAGKVAE-YVDIIELGTPLI------KAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVT 82 (207)
T ss_dssp SCHHHHHHHHHHHGG-GCSEEEECHHHH------HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhhc-cCCEEEECcHHH------HhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEE
Confidence 568899999988877 888888844321 22223456666653 555554333334 4458999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCce-eecccccc-CC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESV-PINNLVQI-KG 868 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i-~~~~~~P~-~g 868 (965)
+..+..++ ...++++.+++.|..+...+ . -..|.++..+. +.+.+ .+.+ ....+.|. .|
T Consensus 83 vh~~~~~~------------~~~~~~~~~~~~g~~~gv~~-~-s~~~p~~~~~~---~~~~g--~d~v~~~~~~~~~~~g 143 (207)
T 3ajx_A 83 VLGSADDS------------TIAGAVKAAQAHNKGVVVDL-I-GIEDKATRAQE---VRALG--AKFVEMHAGLDEQAKP 143 (207)
T ss_dssp EETTSCHH------------HHHHHHHHHHHHTCEEEEEC-T-TCSSHHHHHHH---HHHTT--CSEEEEECCHHHHTST
T ss_pred EeccCChH------------HHHHHHHHHHHcCCceEEEE-e-cCCChHHHHHH---HHHhC--CCEEEEEecccccccC
Confidence 66554322 23356667777888752211 1 12466664433 34456 6777 44444442 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
+. +.. + .+...+-. +..+-+..+-. .+....++.+|||.+++|..+ +... ++.+..+.++
T Consensus 144 ~~-----~~~--~---~i~~~~~~--~~pi~v~GGI~---~~~~~~~~~aGad~vvvGsaI-~~~~-dp~~~~~~~~ 203 (207)
T 3ajx_A 144 GF-----DLN--G---LLAAGEKA--RVPFSVAGGVK---VATIPAVQKAGAEVAVAGGAI-YGAA-DPAAAAKELR 203 (207)
T ss_dssp TC-----CTH--H---HHHHHHHH--TSCEEEESSCC---GGGHHHHHHTTCSEEEESHHH-HTSS-SHHHHHHHHH
T ss_pred CC-----chH--H---HHHHhhCC--CCCEEEECCcC---HHHHHHHHHcCCCEEEEeeec-cCCC-CHHHHHHHHH
Confidence 21 211 2 22222211 23243443332 223345689999999999866 4322 3445444443
No 318
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=92.36 E-value=1.7 Score=44.85 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeeccC-CCCc---------------ccHHHHHHHHHHHHhc-CcEeEEecCCCCHH---
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAWR-ELKD---------------RDLDNIENMICEVKKI-GLETCLTLGMLNEN--- 776 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~---------------~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e--- 776 (965)
.++..+.++.+.+.|++.+.+..... |..+ ...+...+.++++++. .+.+.+.. ..+..
T Consensus 31 ~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~ 109 (262)
T 1rd5_A 31 LATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS-YYKPIMFR 109 (262)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC-CSHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe-cCcHHHHH
Confidence 47888888888899999999853211 1111 2456778888888863 55554432 12211
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCC
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYP 855 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~ 855 (965)
.++.++++|++.+.+.-.+. ++..+.++.+++.|++.. +++ ..|..+.++.+ .... .
T Consensus 110 ~~~~a~~aGadgv~v~d~~~-------------~~~~~~~~~~~~~g~~~i----~~~a~~t~~e~~~~~---~~~~--~ 167 (262)
T 1rd5_A 110 SLAKMKEAGVHGLIVPDLPY-------------VAAHSLWSEAKNNNLELV----LLTTPAIPEDRMKEI---TKAS--E 167 (262)
T ss_dssp CTHHHHHTTCCEEECTTCBT-------------TTHHHHHHHHHHTTCEEC----EEECTTSCHHHHHHH---HHHC--C
T ss_pred HHHHHHHcCCCEEEEcCCCh-------------hhHHHHHHHHHHcCCceE----EEECCCCCHHHHHHH---HhcC--C
Confidence 23458999999988752112 234556667888998742 223 44544443333 3333 2
Q ss_pred CceeeccccccCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 856 ESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 856 ~~i~~~~~~P~~g-T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
.++.+.. .+| |.-... ......+.+...|... +..+-+..+-.. .+....++.+||+++++|..+.
T Consensus 168 g~v~~~s---~~G~tG~~~~---~~~~~~~~i~~v~~~~-~~pI~vgGGI~~--~e~~~~~~~~GAdgvvVGSai~ 234 (262)
T 1rd5_A 168 GFVYLVS---VNGVTGPRAN---VNPRVESLIQEVKKVT-NKPVAVGFGISK--PEHVKQIAQWGADGVIIGSAMV 234 (262)
T ss_dssp SCEEEEC---SSCCBCTTSC---BCTHHHHHHHHHHHHC-SSCEEEESCCCS--HHHHHHHHHTTCSEEEECHHHH
T ss_pred CeEEEec---CCCCCCCCcC---CCchHHHHHHHHHhhc-CCeEEEECCcCC--HHHHHHHHHcCCCEEEEChHHH
Confidence 3443332 234 221111 1123444555555554 333433333221 3333445779999999998654
No 319
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=92.13 E-value=0.42 Score=49.85 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
+.+.+++++.+++..+.|+.-+.+.+....+. ...++++...++.+++ .++.++ +...+.++++.-.++|.
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiS--IDT~~~~V~~aAl~aGa 136 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPIS--IDTYKAEVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEE--EECSCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEE--EeCCCHHHHHHHHHcCC
Confidence 35789999999999999999999976432111 3446667777788875 355554 44457888888888888
Q ss_pred CeEe-ccCCC-CHHHHhccc---C----CC-----C--------HHHHHHHHHHHHHcCCc---eeeeEEEecCCCHHHH
Q psy8199 787 DYYN-HNLDT-SPKLYGDII---S----TR-----D--------YENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQR 841 (965)
Q Consensus 787 ~~i~-i~~es-~~~~~~~i~---~----~~-----~--------~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~et~ed~ 841 (965)
+.|+ ++-+. +++.++-+. . -+ . .+...+.++.+.++|++ +...-.+|++.+.++-
T Consensus 137 ~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n 216 (297)
T 1tx2_A 137 HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQN 216 (297)
T ss_dssp CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHH
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHH
Confidence 7774 33333 444442211 0 01 1 23445567778888885 5555555556777777
Q ss_pred HHHHHHHHhcC
Q psy8199 842 AELIFQLANLN 852 (965)
Q Consensus 842 ~~~l~~l~~l~ 852 (965)
.++++.++++.
T Consensus 217 ~~ll~~l~~l~ 227 (297)
T 1tx2_A 217 LEAMRNLEQLN 227 (297)
T ss_dssp HHHHHTGGGGG
T ss_pred HHHHHHHHHHH
Confidence 77766666654
No 320
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=92.04 E-value=0.97 Score=45.99 Aligned_cols=137 Identities=17% Similarity=0.248 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+.+..++.++++.+.|+.-+-+.+-...+ ....++++...++.+++.+ +.++......++++.-.++|++
T Consensus 26 ~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~--v~iSIDT~~~~Va~~al~aGa~ 103 (270)
T 4hb7_A 26 FNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFD--VKISVDTFRSEVAEACLKLGVD 103 (270)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSS--SEEEEECSCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCC--CeEEEECCCHHHHHHHHHhccc
Confidence 4689999999999999999999986533221 1234677888888887654 4555666788888888888988
Q ss_pred eEe-cc-CCCCHHHHhcccC----------C---C--C-----HHHHHHHHHHHHHcCCc---eeeeEEEecCCCHHHHH
Q psy8199 788 YYN-HN-LDTSPKLYGDIIS----------T---R--D-----YENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRA 842 (965)
Q Consensus 788 ~i~-i~-~es~~~~~~~i~~----------~---~--~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~et~ed~~ 842 (965)
.|+ +. ...+++.++-+.. . . + .+...+.++.+.++|++ +...-=+|+|-|.++=.
T Consensus 104 iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~ 183 (270)
T 4hb7_A 104 MINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEA 183 (270)
T ss_dssp EEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred eeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHH
Confidence 887 33 3335655543221 0 0 1 22334556778889994 33333334468888777
Q ss_pred HHHHHHHhcC
Q psy8199 843 ELIFQLANLN 852 (965)
Q Consensus 843 ~~l~~l~~l~ 852 (965)
+.++.+.++.
T Consensus 184 ~ll~~l~~~~ 193 (270)
T 4hb7_A 184 EVMARLDELV 193 (270)
T ss_dssp HHHTCHHHHH
T ss_pred HHHhhHHHHh
Confidence 6666666554
No 321
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=92.02 E-value=7.1 Score=38.35 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
.++++.++.++.+.+.|++-+-+..- .. .-.+.++.+++..+.+.... .++.+.++...++|.+.+..+ +
T Consensus 22 ~~~~~~~~~~~~l~~gGv~~iel~~k-----~~---~~~~~i~~~~~~~~~~gag~-vl~~d~~~~A~~~GAd~v~~~-~ 91 (207)
T 2yw3_A 22 RGGEDLLGLARVLEEEGVGALEITLR-----TE---KGLEALKALRKSGLLLGAGT-VRSPKEAEAALEAGAAFLVSP-G 91 (207)
T ss_dssp CSCCCHHHHHHHHHHTTCCEEEEECS-----ST---HHHHHHHHHTTSSCEEEEES-CCSHHHHHHHHHHTCSEEEES-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC-----Ch---HHHHHHHHHhCCCCEEEeCe-EeeHHHHHHHHHcCCCEEEcC-C
Confidence 45667788888888889998877421 11 12355555555334444444 668999999999999998766 2
Q ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC
Q psy8199 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874 (965)
Q Consensus 795 s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~ 874 (965)
++ .+.++.+++.|+.+ +.|. .|.+++... .+.+ .+.+.++ | .
T Consensus 92 ~d----------------~~v~~~~~~~g~~~----i~G~-~t~~e~~~A----~~~G--ad~v~~f---p--a------ 133 (207)
T 2yw3_A 92 LL----------------EEVAALAQARGVPY----LPGV-LTPTEVERA----LALG--LSALKFF---P--A------ 133 (207)
T ss_dssp CC----------------HHHHHHHHHHTCCE----EEEE-CSHHHHHHH----HHTT--CCEEEET---T--T------
T ss_pred CC----------------HHHHHHHHHhCCCE----EecC-CCHHHHHHH----HHCC--CCEEEEe---c--C------
Confidence 32 25566677778653 3442 466665443 4567 7888773 3 1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 875 ~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+.....++ +...|-.+|+..+-..++-.. .+.. ..+.+||+.+.+|..+..
T Consensus 134 ~~~gG~~~---lk~l~~~~~~ipvvaiGGI~~--~n~~-~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 134 EPFQGVRV---LRAYAEVFPEVRFLPTGGIKE--EHLP-HYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp TTTTHHHH---HHHHHHHCTTCEEEEBSSCCG--GGHH-HHHTCSSBSCEEESGGGS
T ss_pred ccccCHHH---HHHHHhhCCCCcEEEeCCCCH--HHHH-HHHhCCCcEEEEehhhhC
Confidence 11212333 445566777664444444322 3333 458899999988886533
No 322
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=91.96 E-value=1.6 Score=43.92 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe--eccC-CCCcccHHHHHHHHHHHHhc-CcEeEEecCCCC-HHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMG--AAWR-ELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~--~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~-~e~l~~Lk~aG~~~i 789 (965)
.+++...+.++.+.+.|++.+.+. .|.+ +... .-.+.++.+++. +..+.+....-+ ++.++.+.++|++.+
T Consensus 20 ~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~----~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v 95 (230)
T 1rpx_A 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT----IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIV 95 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC----CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccc----cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEE
Confidence 456677777777888898877665 3322 1111 123566666653 333333222222 357889999999999
Q ss_pred eccCC--CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHNLD--TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~e--s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.+..+ ..+ ...+.++.+++.|+.+...+. ..|..+..+.+ . .+ .+.+-+..+.|
T Consensus 96 ~vh~~~~~~~-------------~~~~~~~~~~~~g~~ig~~~~---p~t~~e~~~~~---~-~~--~d~vl~~~~~p-- 151 (230)
T 1rpx_A 96 SVHCEQSSTI-------------HLHRTINQIKSLGAKAGVVLN---PGTPLTAIEYV---L-DA--VDLVLIMSVNP-- 151 (230)
T ss_dssp EEECSTTTCS-------------CHHHHHHHHHHTTSEEEEEEC---TTCCGGGGTTT---T-TT--CSEEEEESSCT--
T ss_pred EEEecCccch-------------hHHHHHHHHHHcCCcEEEEeC---CCCCHHHHHHH---H-hh--CCEEEEEEEcC--
Confidence 88765 321 123556666777876443322 33443333211 1 12 56665444444
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHH
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKL 943 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~ 943 (965)
|..=.... +.. ++.+...|..++ +..+-+..+-.. .... .++.+||+++.+|..+ +... ++.+..+.
T Consensus 152 g~~g~~~~-~~~---~~~i~~l~~~~~~~~~~~pi~v~GGI~~--~n~~-~~~~aGad~vvvgSaI-~~a~-dp~~a~~~ 222 (230)
T 1rpx_A 152 GFGGQSFI-ESQ---VKKISDLRKICAERGLNPWIEVDGGVGP--KNAY-KVIEAGANALVAGSAV-FGAP-DYAEAIKG 222 (230)
T ss_dssp TCSSCCCC-TTH---HHHHHHHHHHHHHHTCCCEEEEESSCCT--TTHH-HHHHHTCCEEEESHHH-HTSS-CHHHHHHH
T ss_pred CCCCcccc-HHH---HHHHHHHHHHHHhcCCCceEEEECCCCH--HHHH-HHHHcCCCEEEEChhh-hCCC-CHHHHHHH
Confidence 32111112 222 222333343332 333444444332 2333 4678899999999866 4322 45555555
Q ss_pred HH
Q psy8199 944 LK 945 (965)
Q Consensus 944 ~~ 945 (965)
++
T Consensus 223 l~ 224 (230)
T 1rpx_A 223 IK 224 (230)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 323
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=91.85 E-value=10 Score=40.33 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-----C----CC---------------cccHHHHHHHHHHHHhcCcEeEEecC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-----E----LK---------------DRDLDNIENMICEVKKIGLETCLTLG 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-----~----~~---------------~~~~~~~~~~~~~i~~~~~~i~~~~~ 771 (965)
|.|...+.++.+++.|++-+-++..-. + +. ..+.+.+..+.+..++.|+.+.+++-
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~~ 112 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTLF 112 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEeeC
Confidence 688999999999999999999984211 0 00 13456666666666678998887654
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+.+.++.|.+.|++.+-++=-. + .....++.+.+.|-++- +=-|+ -|.+|+...++++++.
T Consensus 113 --d~~svd~l~~~~v~~~KI~S~~-------~-------~n~~LL~~va~~gkPvi--LstGm-at~~Ei~~Ave~i~~~ 173 (349)
T 2wqp_A 113 --SRAAALRLQRMDIPAYKIGSGE-------C-------NNYPLIKLVASFGKPII--LSTGM-NSIESIKKSVEIIREA 173 (349)
T ss_dssp --SHHHHHHHHHHTCSCEEECGGG-------T-------TCHHHHHHHHTTCSCEE--EECTT-CCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHhcCCCEEEECccc-------c-------cCHHHHHHHHhcCCeEE--EECCC-CCHHHHHHHHHHHHHc
Confidence 7899999999999888777211 0 11455666666676642 23344 4999999999999998
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
+ .+.+-+. +|.- +|.+...--++.+...+..+|...+-.+.. ..|......|+..||+ +++..+
T Consensus 174 G--~~iiLlh------c~s~--Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdH--t~G~~~~~AAvAlGA~--iIEkH~ 237 (349)
T 2wqp_A 174 G--VPYALLH------CTNI--YPTPYEDVRLGGMNDLSEAFPDAIIGLSDH--TLDNYACLGAVALGGS--ILERHF 237 (349)
T ss_dssp T--CCEEEEE------CCCC--SSCCGGGCCTHHHHHHHHHCTTSEEEEECC--SSSSHHHHHHHHHTCC--EEEEEB
T ss_pred C--CCEEEEe------ccCC--CCCChhhcCHHHHHHHHHHCCCCCEEeCCC--CCcHHHHHHHHHhCCC--EEEeCC
Confidence 7 4333322 2211 111111224666777777775443433221 3356777889999999 677665
No 324
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=91.76 E-value=0.075 Score=54.30 Aligned_cols=194 Identities=11% Similarity=0.098 Sum_probs=107.7
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC--CHH
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--SPK 798 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es--~~~ 798 (965)
+.++.+.+.|++++++.+-... ........++++++. +..++++.-.|..+.+.++.+-++|++++.++-.. +|+
T Consensus 35 ~~a~~~~~~gad~lhvvDld~a--~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~ 112 (243)
T 4gj1_A 35 KKFKEYEKAGAKELHLVDLTGA--KDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDAT 112 (243)
T ss_dssp HHHHHHHHHTCCEEEEEEHHHH--HCGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHH
T ss_pred HHHHHHHHCCCCEEEEEecCcc--cccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCc
Confidence 3456677789999999874211 011122234555554 47899999999999999999999999999999655 555
Q ss_pred HHhcccCCCCHHHHHHHHHHHHHcCCceeee-------EEEecC---CCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 799 LYGDIISTRDYENRLNTLKNVRNVGINICCG-------GIIGLS---ESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~-------~i~Gl~---et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+.+++. +.....-+-+... .++-.+ .|..+..+.++.+.+++ ...+-++ -+-..|
T Consensus 113 li~e~~------------~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~eil~t-~Id~DG 177 (243)
T 4gj1_A 113 LCLEIL------------KEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKG--LKHILCT-DISKDG 177 (243)
T ss_dssp HHHHHH------------HHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTT--CCEEEEE-ETTC--
T ss_pred hHHHHH------------hcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcC--CcEEEee-eecccc
Confidence 543322 1111111111111 121112 23345667777777877 6665444 233467
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
|- . .++.+ . +...+...|+..+-.+++-..+ .++.. ++.+++++.+|.-+ -.+--+.+|..+.+
T Consensus 178 t~-~---G~d~~-l---~~~l~~~~~~ipviasGGv~~~-~Dl~~--l~~~~~gvivg~Al-~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 178 TM-Q---GVNVR-L---YKLIHEIFPNICIQASGGVASL-KDLEN--LKGICSGVIVGKAL-LDGVFSVEEGIRCL 241 (243)
T ss_dssp -------CCCHH-H---HHHHHHHCTTSEEEEESCCCSH-HHHHH--TTTTCSEEEECHHH-HTTSSCHHHHHHHH
T ss_pred cc-c---CCCHH-H---HHHHHHhcCCCCEEEEcCCCCH-HHHHH--HHccCchhehHHHH-HCCCCCHHHHHHHh
Confidence 62 1 22333 2 2333445666655566655443 44433 47789999999754 33334666665544
No 325
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=91.41 E-value=5.1 Score=40.46 Aligned_cols=180 Identities=12% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCC----CCcccHHHHHHHHHHHH----hcCcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRE----LKDRDLDNIENMICEVK----KIGLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~----~~~~~~~~~~~~~~~i~----~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
+.+.++++.+.|++.|.+=.-..+ ....+.+.+.++++.++ +.+..+.++. .++..+++|++.+++
T Consensus 45 ~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd------~~~lA~~~gAdGVHL 118 (243)
T 3o63_A 45 LAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVND------RADIARAAGADVLHL 118 (243)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEES------CHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeC------HHHHHHHhCCCEEEe
Confidence 455555667789998888332110 00022445555555554 3678887773 234466789999999
Q ss_pred cCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 792 NLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 792 ~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
+.+. .....+++. | ...++|. -.|.+++.. +.+.+ .+.|.+.+++|.+.-
T Consensus 119 g~~dl~~~~~r~~~------------------~----~~~~iG~S~ht~~Ea~~----A~~~G--aDyI~vgpvf~T~tK 170 (243)
T 3o63_A 119 GQRDLPVNVARQIL------------------A----PDTLIGRSTHDPDQVAA----AAAGD--ADYFCVGPCWPTPTK 170 (243)
T ss_dssp CTTSSCHHHHHHHS------------------C----TTCEEEEEECSHHHHHH----HHHSS--CSEEEECCSSCCCC-
T ss_pred cCCcCCHHHHHHhh------------------C----CCCEEEEeCCCHHHHHH----HhhCC--CCEEEEcCccCCCCC
Confidence 9755 332222211 1 2345666 377776543 34567 899999987775433
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
+. .++.+.+.+.++ +...+ +..+-..++- ..+--..++.+||+++.+|+.+.... ++.+..+.+
T Consensus 171 ~~--~~~~gl~~l~~~----~~~~~~~iPvvAiGGI---~~~ni~~~~~aGa~gvav~sai~~a~--dp~~a~~~l 235 (243)
T 3o63_A 171 PG--RAAPGLGLVRVA----AELGGDDKPWFAIGGI---NAQRLPAVLDAGARRIVVVRAITSAD--DPRAAAEQL 235 (243)
T ss_dssp ------CCCHHHHHHH----HTC---CCCEEEESSC---CTTTHHHHHHTTCCCEEESHHHHTCS--SHHHHHHHH
T ss_pred CC--cchhhHHHHHHH----HHhccCCCCEEEecCC---CHHHHHHHHHcCCCEEEEeHHHhCCC--CHHHHHHHH
Confidence 22 133444433332 21121 3323233322 23333455889999999998764432 344444333
No 326
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=91.40 E-value=5.2 Score=41.08 Aligned_cols=186 Identities=15% Similarity=0.086 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeecc-CCCCcc---------------cHHHHHHHHHHHHhc--CcEeEE----ec--C
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAW-RELKDR---------------DLDNIENMICEVKKI--GLETCL----TL--G 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~-~~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~----~~--~ 771 (965)
+.+.-++.++.+.+.|+.-+-+.-.. +|..+. .++.++++++++++. .+.+.+ |+ .
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~ 111 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 56778888888889999888885321 121111 134678888888863 444433 22 1
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
.-.+..++.++++|++.+.+. +-.+++..+..+.++++|+.. -+++ -+.|.++++ +.+.+.
T Consensus 112 ~g~~~f~~~~~~aGvdGvIip-------------Dlp~ee~~~~~~~~~~~gl~~--I~lv-ap~t~~eri---~~i~~~ 172 (271)
T 3nav_A 112 RGIDDFYQRCQKAGVDSVLIA-------------DVPTNESQPFVAAAEKFGIQP--IFIA-PPTASDETL---RAVAQL 172 (271)
T ss_dssp TCHHHHHHHHHHHTCCEEEET-------------TSCGGGCHHHHHHHHHTTCEE--EEEE-CTTCCHHHH---HHHHHH
T ss_pred HhHHHHHHHHHHCCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCeE--EEEE-CCCCCHHHH---HHHHHH
Confidence 113778999999999997764 222345677788899999974 2233 345544444 334444
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
. ..++.+-...-.-|+ .. .. +.+..+.+...|...+ ..+-+ +-+--.++....++..||+++++|..++
T Consensus 173 ~--~gfiY~vs~~GvTG~--~~--~~-~~~~~~~v~~vr~~~~-~Pv~v--GfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 173 G--KGYTYLLSRAGVTGA--ET--KA-NMPVHALLERLQQFDA-PPALL--GFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp C--CSCEEECCCC------------C-CHHHHHHHHHHHHTTC-CCEEE--CSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred C--CCeEEEEeccCCCCc--cc--CC-chhHHHHHHHHHHhcC-CCEEE--ECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 5 455543222222232 11 11 2456666777777653 22333 3322123433446889999999998653
No 327
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=91.32 E-value=1.3 Score=46.74 Aligned_cols=137 Identities=17% Similarity=0.231 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
+.+++.+++.++++.+.|+.-+-+.+-...+. ..+++++...++.+++. ++. +++.....++++.-.++|.
T Consensus 29 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vp--iSIDT~~~~Va~aAl~aGa 106 (314)
T 2vef_A 29 FFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVL--ISIDTWKSQVAEAALAAGA 106 (314)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCE--EEEECSCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCce--EEEeCCCHHHHHHHHHcCC
Confidence 46899999999999999999999976433222 14577788888888764 544 4556667888888888888
Q ss_pred CeEe-ccCCC-CHHHHhc----------ccC-----CCC---------------------------HHH-----HHHHHH
Q psy8199 787 DYYN-HNLDT-SPKLYGD----------IIS-----TRD---------------------------YEN-----RLNTLK 817 (965)
Q Consensus 787 ~~i~-i~~es-~~~~~~~----------i~~-----~~~---------------------------~~~-----~~~~i~ 817 (965)
+.|+ ++-.. +++.++- ++. +.+ .++ ..+.++
T Consensus 107 ~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~ 186 (314)
T 2vef_A 107 DLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALA 186 (314)
T ss_dssp CEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 7775 44332 3433321 110 001 222 234567
Q ss_pred HHHHcCCc---eeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 818 NVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 818 ~~~~~Gi~---v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
.+.++|++ +...--+|++-|.++-.+.++.++++.
T Consensus 187 ~a~~~GI~~~~IilDPGiGF~kt~~~nl~ll~~l~~l~ 224 (314)
T 2vef_A 187 RAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLH 224 (314)
T ss_dssp HHHHHTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHH
T ss_pred HHHHcCCChhhEEEeCCCCcccchHHHHHHHHHHHHhh
Confidence 78889993 444444455688887777777777654
No 328
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=91.25 E-value=1.9 Score=43.27 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEe--eccC-CCCcccHHHHHHHHHHHHhc-CcEeE--EecCCCCHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMG--AAWR-ELKDRDLDNIENMICEVKKI-GLETC--LTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~--~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~--~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
+...+.+.++.+.+.|++.+.+. .|.+ +..... .+.++.+++. ...+. +-... ..+.++.+.++|++.+
T Consensus 17 d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~----~~~~~~lr~~~~~~~~v~lmv~d-~~~~i~~~~~agad~v 91 (228)
T 1h1y_A 17 DFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIG----APVIQSLRKHTKAYLDCHLMVTN-PSDYVEPLAKAGASGF 91 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC----HHHHHHHHTTCCSEEEEEEESSC-GGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhC----HHHHHHHHhhcCCcEEEEEEecC-HHHHHHHHHHcCCCEE
Confidence 45566667777778898876554 4432 211112 2555556652 22222 22211 2446888899999999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc--CCCCCceeeccccccC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL--NPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l--~~~~~~i~~~~~~P~~ 867 (965)
.+-.+.+++. +.+.++.+++.|+.+. +.+. +.|..+.+ +.+.+. + .+.+.+....|
T Consensus 92 ~vH~~~~~~~------------~~~~~~~i~~~g~~ig--v~~~-p~t~~e~~---~~~~~~~~~--~d~vl~~sv~p-- 149 (228)
T 1h1y_A 92 TFHIEVSRDN------------WQELIQSIKAKGMRPG--VSLR-PGTPVEEV---FPLVEAENP--VELVLVMTVEP-- 149 (228)
T ss_dssp EEEGGGCTTT------------HHHHHHHHHHTTCEEE--EEEC-TTSCGGGG---HHHHHSSSC--CSEEEEESSCT--
T ss_pred EECCCCcccH------------HHHHHHHHHHcCCCEE--EEEe-CCCCHHHH---HHHHhcCCC--CCEEEEEeecC--
Confidence 7776553211 1456667778887765 3332 34443333 333443 5 68887776655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
|+-=.... ...++.+...|...++..+-+..+-+. +.-..++.+|||.+++|..+.... ++.+..+.++
T Consensus 150 g~~g~~~~----~~~l~~i~~~~~~~~~~pi~v~GGI~~---~ni~~~~~aGaD~vvvGsai~~~~--d~~~~~~~l~ 218 (228)
T 1h1y_A 150 GFGGQKFM----PEMMEKVRALRKKYPSLDIEVDGGLGP---STIDVAASAGANCIVAGSSIFGAA--EPGEVISALR 218 (228)
T ss_dssp TCSSCCCC----GGGHHHHHHHHHHCTTSEEEEESSCST---TTHHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHH
T ss_pred CCCcccCC----HHHHHHHHHHHHhcCCCCEEEECCcCH---HHHHHHHHcCCCEEEECHHHHCCC--CHHHHHHHHH
Confidence 33212222 223344455566665555555555433 223345778999999998664332 3555555444
No 329
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=91.03 E-value=12 Score=37.18 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=81.1
Q ss_pred HHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCc
Q psy8199 778 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 857 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~ 857 (965)
...++++|++.+.++.-- + ...+.+..+-++.++++|+.+ |+=.||+.|. +.+..++ +..
T Consensus 81 ~~~l~~~Ga~~Vllghse--------R-R~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~i 140 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE--------N-RMILADLEAAIRRAEEVGLMT----MVCSNNPAVS-----AAVAALN--PDY 140 (225)
T ss_dssp HHHHHHTTCCEEEESCGG--------G-CCBHHHHHHHHHHHHHHTCEE----EEEESSHHHH-----HHHHTTC--CSE
T ss_pred HHHHHHcCCCEEEECcch--------h-cCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CCE
Confidence 888999999999998511 0 122345677788899999854 3335676665 3345666 554
Q ss_pred eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 858 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 858 i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
|.+++.-- -||-..- ...++++.-++.+..|.+.++..+ +..+-... .+....+...|+|++.+|+..+..
T Consensus 141 Iayep~wa-iGtG~~v-~t~~~d~~~~~~~~ir~~~~~~~i-lyggsV~~-~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 141 VAVEPPEL-IGTGIPV-SKAKPEVITNTVELVKKVNPEVKV-LCGAGIST-GEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp EEECCTTT-TTTSCCT-TTSCTHHHHHHHHHHHHHCTTSEE-EEESSCCS-HHHHHHHHHTTCSEEEESHHHHTC
T ss_pred EEEeChhh-hccCCCC-CCCChhHHHHHHHHHHhccCCCEE-EEeCCCCc-HHHHHHHHhCCCCEEEeCHHHHCC
Confidence 44442111 2442111 245777788888888988766533 33333232 344445567999999999976554
No 330
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=90.97 E-value=2.1 Score=42.62 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEee--ccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCH-HHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGA--AWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNE-NQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~--g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~-e~l~~Lk~aG~~~i~ 790 (965)
.++..+.+.++.+.+.|++.+++.. |..+.. ...-.+.++++++. +..+.+.....+. +.++.+.++|++.+.
T Consensus 13 ~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~---~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~ 89 (220)
T 2fli_A 13 ADYANFASELARIEETDAEYVHIDIMDGQFVPN---ISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 89 (220)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSC---BCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCc---cccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEE
Confidence 4556667777777788988876653 432211 11114555556653 5555554443343 356999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
+..+.. +...+.++.+++.|..+...+ ...|..+..+ .+....+.+-+....| |+.
T Consensus 90 vh~~~~-------------~~~~~~~~~~~~~g~~i~~~~---~~~t~~e~~~------~~~~~~d~vl~~~~~~--g~~ 145 (220)
T 2fli_A 90 IHTEST-------------RHIHGALQKIKAAGMKAGVVI---NPGTPATALE------PLLDLVDQVLIMTVNP--GFG 145 (220)
T ss_dssp EEGGGC-------------SCHHHHHHHHHHTTSEEEEEE---CTTSCGGGGG------GGTTTCSEEEEESSCT--TCS
T ss_pred EccCcc-------------ccHHHHHHHHHHcCCcEEEEE---cCCCCHHHHH------HHHhhCCEEEEEEECC--CCc
Confidence 765332 112345556667776643322 2344443322 1111145564433333 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
=....+...++ ++..|...+ +..+-+..+-.. .+.. .+..+||+++++|..+ +.. .++.+..+.++
T Consensus 146 g~~~~~~~~~~----i~~~~~~~~~~~~~~~i~v~GGI~~--~~~~-~~~~~Gad~vvvGsai-~~~-~d~~~a~~~~~ 215 (220)
T 2fli_A 146 GQAFIPECLEK----VATVAKWRDEKGLSFDIEVDGGVDN--KTIR-ACYEAGANVFVAGSYL-FKA-SDLVSQVQTLR 215 (220)
T ss_dssp SCCCCGGGHHH----HHHHHHHHHHTTCCCEEEEESSCCT--TTHH-HHHHHTCCEEEESHHH-HTS-SCHHHHHHHHH
T ss_pred ccccCHHHHHH----HHHHHHHHHhcCCCceEEEECcCCH--HHHH-HHHHcCCCEEEEChHH-hCC-CCHHHHHHHHH
Confidence 11112212222 222333332 333445544432 3333 3578899999999866 443 24565555543
No 331
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=90.86 E-value=2.2 Score=42.61 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
..++++.++.++.+.+.|++-+-+..-. + .-.+.++.+++. .+.+.. ...++.+.++...++|.+.+..
T Consensus 42 ~~~~~~a~~~a~al~~gGi~~iEvt~~t-~-------~a~e~I~~l~~~~~~~~iGa-GTVlt~~~a~~Ai~AGA~fIvs 112 (232)
T 4e38_A 42 IDNAEDIIPLGKVLAENGLPAAEITFRS-D-------AAVEAIRLLRQAQPEMLIGA-GTILNGEQALAAKEAGATFVVS 112 (232)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEE-ECCCSHHHHHHHHHHTCSEEEC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------CHHHHHHHHHHhCCCCEEeE-CCcCCHHHHHHHHHcCCCEEEe
Confidence 3568899999999999999988884331 1 123555555542 344433 3467999999999999988754
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
.. .+ .+.++.++++|+.+..+.. |..|+... .+++ .+.+.++ | ..+
T Consensus 113 P~-~~----------------~~vi~~~~~~gi~~ipGv~-----TptEi~~A----~~~G--ad~vK~F---P--a~~- 158 (232)
T 4e38_A 113 PG-FN----------------PNTVRACQEIGIDIVPGVN-----NPSTVEAA----LEMG--LTTLKFF---P--AEA- 158 (232)
T ss_dssp SS-CC----------------HHHHHHHHHHTCEEECEEC-----SHHHHHHH----HHTT--CCEEEEC---S--TTT-
T ss_pred CC-CC----------------HHHHHHHHHcCCCEEcCCC-----CHHHHHHH----HHcC--CCEEEEC---c--Ccc-
Confidence 31 11 3556778888988766543 77766654 5677 7888763 3 221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
.... ..+...+--+|+..+-..++-. .+.....+.+|+...+.|..+
T Consensus 159 -----~gG~---~~lkal~~p~p~ip~~ptGGI~---~~n~~~~l~aGa~~~vgGs~l 205 (232)
T 4e38_A 159 -----SGGI---SMVKSLVGPYGDIRLMPTGGIT---PSNIDNYLAIPQVLACGGTWM 205 (232)
T ss_dssp -----TTHH---HHHHHHHTTCTTCEEEEBSSCC---TTTHHHHHTSTTBCCEEECGG
T ss_pred -----ccCH---HHHHHHHHHhcCCCeeeEcCCC---HHHHHHHHHCCCeEEEECchh
Confidence 1122 3344445567766444433332 233345588999887777754
No 332
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=90.84 E-value=9.4 Score=41.05 Aligned_cols=181 Identities=13% Similarity=0.075 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCC-----C--------------------cccHHHHHHHHHHHHhcCcEeEEec
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWREL-----K--------------------DRDLDNIENMICEVKKIGLETCLTL 770 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~--------------------~~~~~~~~~~~~~i~~~~~~i~~~~ 770 (965)
|.|...+.++.+++.|++-+-++...... . ..+.+.+.++.+..++.|+.+.+++
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~stp 121 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTV 121 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBC
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEcc
Confidence 68899999999999999999887643211 0 1234555555555556788777554
Q ss_pred CCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHh
Q psy8199 771 GMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 850 (965)
Q Consensus 771 ~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~ 850 (965)
.+.+.++.|.+.|++.+-|+=-. + .....++.+.+.|-++- +=-|+ -|.+|+...++++++
T Consensus 122 --fD~~svd~l~~~~vd~~KIgS~~-------~-------~N~pLL~~va~~gKPVi--LStGm-aTl~Ei~~Ave~i~~ 182 (385)
T 1vli_A 122 --CDEGSADLLQSTSPSAFKIASYE-------I-------NHLPLLKYVARLNRPMI--FSTAG-AEISDVHEAWRTIRA 182 (385)
T ss_dssp --CSHHHHHHHHTTCCSCEEECGGG-------T-------TCHHHHHHHHTTCSCEE--EECTT-CCHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHhcCCCEEEECccc-------c-------cCHHHHHHHHhcCCeEE--EECCC-CCHHHHHHHHHHHHH
Confidence 47889999988888888776210 0 12455666666676652 23344 499999999999999
Q ss_pred cCCCCCceee-ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc-hhhHHHHhhcCccEEeeCCc
Q psy8199 851 LNPYPESVPI-NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG-ETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 851 l~~~~~~i~~-~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~-~~~~~~~l~~Gan~~~~g~~ 928 (965)
.+ ...|.+ ....-+| ||.+. --++.+...+..+|...+-.+.. ..| ..+...|+.+||+ +++..
T Consensus 183 ~G--n~~iiLlhc~s~YP-tp~~~-------~nL~aI~~Lk~~f~~lpVG~SdH--t~G~~~~~~AAvAlGA~--iIEkH 248 (385)
T 1vli_A 183 EG--NNQIAIMHCVAKYP-APPEY-------SNLSVIPMLAAAFPEAVIGFSDH--SEHPTEAPCAAVRLGAK--LIEKH 248 (385)
T ss_dssp TT--CCCEEEEEECSSSS-CCGGG-------CCTTHHHHHHHHSTTSEEEEEEC--CSSSSHHHHHHHHTTCS--EEEEE
T ss_pred CC--CCcEEEEeccCCCC-CChhh-------cCHHHHHHHHHHcCCCCEEeCCC--CCCchHHHHHHHHcCCC--EEEeC
Confidence 87 433333 3222222 12222 23556677777775443322211 335 6677889999999 67755
Q ss_pred c
Q psy8199 929 L 929 (965)
Q Consensus 929 ~ 929 (965)
+
T Consensus 249 f 249 (385)
T 1vli_A 249 F 249 (385)
T ss_dssp B
T ss_pred C
Confidence 5
No 333
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=90.67 E-value=2.4 Score=44.89 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHH-hc--CcEeEEecCCCC----HHHHHHHHHhCCC-eEeccCCC-CHHHHhcccCCCCHHHHHHHHH
Q psy8199 747 RDLDNIENMICEVK-KI--GLETCLTLGMLN----ENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIISTRDYENRLNTLK 817 (965)
Q Consensus 747 ~~~~~~~~~~~~i~-~~--~~~i~~~~~~~~----~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~ 817 (965)
...+.+.+.++..+ .. +..+..+....+ .+.++.+.++|+| .+.+++-+ .......+ ..+++...+.++
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~--g~~~e~~~~iv~ 151 (311)
T 1jub_A 74 LGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQL--AYDFEATEKLLK 151 (311)
T ss_dssp SCHHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCG--GGCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccc--cCCHHHHHHHHH
Confidence 34566666665544 23 444444444333 3345667788888 88888754 22100111 236777788888
Q ss_pred HHHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc-----c--CCCCCCC-------C-CCCCHHH
Q psy8199 818 NVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ-----I--KGTPLYG-------S-SILDPLE 881 (965)
Q Consensus 818 ~~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P-----~--~gT~l~~-------~-~~~~~~~ 881 (965)
.+++. ++++..- +..+-+.++..+.++.+.+.+ .+.|.+..... . .+++... . .+.....
T Consensus 152 ~vr~~~~~Pv~vK--i~~~~~~~~~~~~a~~~~~~G--~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~ 227 (311)
T 1jub_A 152 EVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFP--LTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPT 227 (311)
T ss_dssp HHTTTCCSCEEEE--ECCCCSHHHHHHHHHHHTTSC--CCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHH
T ss_pred HHHHhcCCCEEEE--ECCCCCHHHHHHHHHHHHHcC--CcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHH
Confidence 88875 5555433 223347788888888888888 78877654321 0 0111100 0 1111223
Q ss_pred HHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCcccc-CCCC---CChhhHHHHHHcCCCcchhhh
Q psy8199 882 FIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT-TDNT---KTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 882 ~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t-~~~~---~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.++.+...+..++ +..+ +..+-.....+ ...++.+||+.+++|..++. .+.. =.++....+++.|+. +.+
T Consensus 228 ~~~~i~~v~~~~~~~ipv-i~~GGI~~~~d-a~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~g~~---si~ 302 (311)
T 1jub_A 228 ALANVRAFYTRLKPEIQI-IGTGGIETGQD-AFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQ---SIA 302 (311)
T ss_dssp HHHHHHHHHTTSCTTSEE-EEESSCCSHHH-HHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHTCC---SGG
T ss_pred HHHHHHHHHHhcCCCCCE-EEECCCCCHHH-HHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHcCCC---CHH
Confidence 3556666666664 3333 22222232233 34557899999999987664 3210 012344556666764 344
Q ss_pred HHhhhhc
Q psy8199 957 KMKNNIK 963 (965)
Q Consensus 957 ~~~~~~~ 963 (965)
+++-.++
T Consensus 303 e~~g~~~ 309 (311)
T 1jub_A 303 DFHGKLK 309 (311)
T ss_dssp GTTTCCB
T ss_pred HHhChhh
Confidence 4444443
No 334
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=90.21 E-value=0.34 Score=49.64 Aligned_cols=75 Identities=15% Similarity=0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 795 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es 795 (965)
+..+.++.+.+.|+..+++.+-....... ..-.++++.+++ .++.+....|..+.+.++.+.++|++.+.++-..
T Consensus 36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~~--~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~ 111 (247)
T 3tdn_A 36 LLRDWVVEVEKRGAGEILLTSIDRDGTKS--GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAA 111 (247)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTCSS--CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEecCcccCCC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHH
Confidence 34455666678899999987653211111 112456667775 6889999999999999999999999999998543
No 335
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=90.18 E-value=18 Score=37.11 Aligned_cols=230 Identities=11% Similarity=0.052 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhc--CcEeEEecCCC---CHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML---NENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~---~~e~l~~Lk~aG~~ 787 (965)
..+++||.+.+.+..+.|+.-+++-.=.. .-...+.+.|.+++..|++. ++-+.++.|.. .++.+..+ +...+
T Consensus 30 PvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~Pe 108 (284)
T 3chv_A 30 PITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKPD 108 (284)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCCS
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCCC
Confidence 38999999999999999999888854321 22356789999999999963 66666654332 23444444 45667
Q ss_pred eEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCC--CCCceeecccc
Q psy8199 788 YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP--YPESVPINNLV 864 (965)
Q Consensus 788 ~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~--~~~~i~~~~~~ 864 (965)
..+++.-| +-. ..+. ..+++...+.++.+++.|++... .+| +..++.. +..+.+-+. .+.++.+. +
T Consensus 109 ~aSl~~Gs~Nf~--~~v~-~n~~~~~~~~~~~~~e~Gv~pE~-e~f----d~g~l~~-~~~l~~~Gll~~p~~~~~v--l 177 (284)
T 3chv_A 109 MASLSVGSNNFP--SRVY-ENPPDLVDWLAAQMRSYRVTPEI-EAF----DLSHILR-AIDMHGRGLLYGKLYVQFV--M 177 (284)
T ss_dssp EEEECCSCEECS--SSEE-CCCHHHHHHHHHHHHHHTCEEEE-EES----SHHHHHH-HHHHHHTTCSCSSCEEEEE--E
T ss_pred EEEecCcccccC--Cccc-cCCHHHHHHHHHHHHHcCCEEEE-EEE----CHHHHHH-HHHHHHcCCCCCCceEEEE--E
Confidence 77777766 311 1122 35788999999999999998764 344 3333443 444444442 12222221 1
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-EeeCCccccCCCC----C---
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS-IFYGDKLLTTDNT----K--- 936 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~-~~~g~~~~t~~~~----~--- 936 (965)
=.++ -.+.+++.+.-++..+.--.|.... ..++.....-.+...++..|-+. +=.+|++.-..|. |
T Consensus 178 Gv~~-----g~~~~~~~L~~~~~~~p~~~~~~~w-s~~g~Gr~q~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~l 251 (284)
T 3chv_A 178 GVKN-----AMPADREVFDFYVRMMRTRAPQAEW-CAAGIGANQLTVNEWAIAAGGHTRTGLEDNIRLDRQTLAPSNAAL 251 (284)
T ss_dssp CCTT-----SCCCCHHHHHHHHHHHHHHCTTSEE-EEEECTTHHHHHHHHHHHTTCEEEESTTTCCBSSSSCBCCCHHHH
T ss_pred ecCC-----CCCCCHHHHHHHHHhccCCCCCceE-EEEecCcchhHHHHHHHHcCCCeEEecccccCCCCCCCCCCHHHH
Confidence 1222 1346777777776554221111211 11111111112444577888883 2244665545442 1
Q ss_pred ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 937 TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 937 ~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+++..++++++|+.+ -+.+|.++.|
T Consensus 252 V~~~~~i~~~lgr~v-Atp~eAR~iL 276 (284)
T 3chv_A 252 VRRSVELCDKYQRPV-ASWQQAREIL 276 (284)
T ss_dssp HHHHHHHHHHTTCCB-CCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCC-CCHHHHHHHc
Confidence 345677778999987 4555555544
No 336
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=89.94 E-value=2.2 Score=42.59 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHCCCCE--EEEeeccCCC-CcccHHHHHHHHHHHHhc--CcEeEEecCCCCHH-HHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKSDGATR--FCMGAAWREL-KDRDLDNIENMICEVKKI--GLETCLTLGMLNEN-QAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~--i~l~~g~~~~-~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e-~l~~Lk~aG~~~ 788 (965)
.+.-.+.++++.+.+.|++. +.+..|.+.+ ..... +.++.+++. ...+-++.-..+++ .++.+.+ .+.
T Consensus 15 ~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~----~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~ 88 (227)
T 1tqx_A 15 SNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGP----PVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQ 88 (227)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCH----HHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCH----HHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCE
Confidence 34556666777777778876 4555565432 22222 456666653 34454444333333 3444444 677
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+.+-.|+.++ +..+.++..+.+++.|.++...+ -+.|..+. ++.+.+++ .++.|-++...| |
T Consensus 89 itvH~ea~~~---------~~~~~i~~~~~i~~~G~k~gval---np~tp~~~---~~~~l~~g-~~D~VlvmsV~p--G 150 (227)
T 1tqx_A 89 LTFHFEALNE---------DTERCIQLAKEIRDNNLWCGISI---KPKTDVQK---LVPILDTN-LINTVLVMTVEP--G 150 (227)
T ss_dssp EEEEGGGGTT---------CHHHHHHHHHHHHTTTCEEEEEE---CTTSCGGG---GHHHHTTT-CCSEEEEESSCT--T
T ss_pred EEEeecCCcc---------CHHHHHHHHHHHHHcCCeEEEEe---CCCCcHHH---HHHHhhcC-CcCEEEEeeecc--C
Confidence 7777666311 13333333338899998875533 23444332 33334432 167887775544 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
.-=+... ...++.+...|.+.++..|-+.++-+ .+....+..+|||.+++|..+ +... ++.+..+.++
T Consensus 151 f~gq~f~----~~~l~ki~~lr~~~~~~~I~VdGGI~---~~ti~~~~~aGAd~~V~GsaI-f~~~-d~~~~i~~l~ 218 (227)
T 1tqx_A 151 FGGQSFM----HDMMGKVSFLRKKYKNLNIQVDGGLN---IETTEISASHGANIIVAGTSI-FNAE-DPKYVIDTMR 218 (227)
T ss_dssp CSSCCCC----GGGHHHHHHHHHHCTTCEEEEESSCC---HHHHHHHHHHTCCEEEESHHH-HTCS-SHHHHHHHHH
T ss_pred CCCcccc----hHHHHHHHHHHHhccCCeEEEECCCC---HHHHHHHHHcCCCEEEEeHHH-hCCC-CHHHHHHHHH
Confidence 3211222 23344445566666655565555443 334456689999999999865 4322 4555555554
No 337
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=89.89 E-value=9.8 Score=39.10 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-----ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD-----RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-----~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+.+..++.++.+++.|.+-+-++..-..... ...+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 50 ~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~~k 126 (276)
T 1vs1_A 50 SWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEV--LDPRHVETVSRY-ADMLQ 126 (276)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEEC--CCGGGHHHHHHH-CSEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEec--CCHHHHHHHHHh-CCeEE
Confidence 6899999999999999988776654321111 123333333333345798887764 467778888888 89888
Q ss_pred ccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec--ccccc
Q psy8199 791 HNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN--NLVQI 866 (965)
Q Consensus 791 i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~--~~~P~ 866 (965)
|+--+ +. ..++.+.+.|.+| .+=-|..-|.+|+...++.+..-+ -..+.+. ...-+
T Consensus 127 Igs~~~~n~----------------~ll~~~a~~~kPV--~lk~G~~~t~~ei~~Ave~i~~~G--n~~i~L~~Rg~~~y 186 (276)
T 1vs1_A 127 IGARNMQNF----------------PLLREVGRSGKPV--LLKRGFGNTVEELLAAAEYILLEG--NWQVVLVERGIRTF 186 (276)
T ss_dssp ECGGGTTCH----------------HHHHHHHHHTCCE--EEECCTTCCHHHHHHHHHHHHHTT--CCCEEEEECCBCCS
T ss_pred ECcccccCH----------------HHHHHHHccCCeE--EEcCCCCCCHHHHHHHHHHHHHcC--CCeEEEEeCCcCCC
Confidence 88422 22 2334444556554 233333358899999999998877 3333332 11112
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc---cccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA---GRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~---~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
|+.+.+. -.++.+...|..+.-..+--+. +...+-......++..||+++|++.++
T Consensus 187 p~y~~~~-------vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 187 EPSTRFT-------LDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp CCSSSSB-------CBHHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CCcCcch-------hCHHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 2222111 1233344445543111111121 111111345667888999999999875
No 338
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=89.77 E-value=10 Score=47.55 Aligned_cols=215 Identities=13% Similarity=0.058 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccC-----CCC-cccHHHHHHHHHHHHhcCcEeEEec----CCC------CHH
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWR-----ELK-DRDLDNIENMICEVKKIGLETCLTL----GML------NEN 776 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~-----~~~-~~~~~~~~~~~~~i~~~~~~i~~~~----~~~------~~e 776 (965)
++.++.++.++.+.+. |+..+-..++.. +.. ..+++.+..+.+.+.+..+...++. |.. .++
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~ 631 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHK 631 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHH
Confidence 7799999999998887 998888755421 112 1223333222222221222222222 211 356
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe---cC------CCHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---LS------ESRDQRAELIFQ 847 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G---l~------et~ed~~~~l~~ 847 (965)
.++...++|++.+.+..-.++ .......++.+++.|..+...+.+- +. .+.+.+.+.++.
T Consensus 632 ~v~~a~~~Gvd~irif~~~sd-----------~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~ 700 (1150)
T 3hbl_A 632 FVQESAKAGIDVFRIFDSLNW-----------VDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKE 700 (1150)
T ss_dssp HHHHHHHTTCCEEEEECTTCC-----------GGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEEeeCCH-----------HHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHH
Confidence 688899999999988754342 1233567778888898776666665 21 457889999999
Q ss_pred HHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEeeC
Q psy8199 848 LANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 848 l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~g 926 (965)
+.+.+ .+.|.+. .| ....+|.++.+++...|..+ +..+.+-++-. .+.......|+.+||+.+=.-
T Consensus 701 ~~~~G--a~~i~l~------Dt----~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~a 767 (1150)
T 3hbl_A 701 LEREG--FHILAIK------DM----AGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTA 767 (1150)
T ss_dssp HHHTT--CSEEEEE------ET----TCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCeeeEc------Cc----cCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 99999 7776654 44 24468899999999888876 44455554331 222233456889999954221
Q ss_pred Ccc--ccCCCCCChhhHHHHHHcCCCcch
Q psy8199 927 DKL--LTTDNTKTNDDSKLLKKLGINTRN 953 (965)
Q Consensus 927 ~~~--~t~~~~~~~~~~~~~~~~g~~~~~ 953 (965)
..= -.++..+.++...+|+..|+.+.-
T Consensus 768 i~GlG~~~gn~~lE~lv~~L~~~g~~tgi 796 (1150)
T 3hbl_A 768 VASMSGLTSQPSANSLYYALNGFPRHLRT 796 (1150)
T ss_dssp CGGGCSBTSCCBHHHHHHHTTTSSCCBCS
T ss_pred ccccCCCCCCccHHHHHHHHHhcCCCcCc
Confidence 110 133444677888888888887543
No 339
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=89.69 E-value=16 Score=36.42 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=95.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeE-Eec----C---C--CCHHHHHHH
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETC-LTL----G---M--LNENQAYRL 781 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~-~~~----~---~--~~~e~l~~L 781 (965)
+..+++.+.+.++.+.+.|+..+...+ .+.++++++ .++++. .+- + . .+.+.++.+
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~ 97 (232)
T 3igs_A 31 PLDKPEIVAAMALAAEQAGAVAVRIEG-------------IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDAL 97 (232)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCeEEEECC-------------HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHH
Confidence 356788999999999999998776521 234566665 455542 211 1 1 255688999
Q ss_pred HHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 782 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 782 k~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
+++|+|.+.++.-. ...+ +...+.++.+++.|+.+.... .|.++. +.+.+.+ .+.|.++
T Consensus 98 ~~~Gad~V~l~~~~-------~~~p---~~l~~~i~~~~~~g~~v~~~v-----~t~eea----~~a~~~G--ad~Ig~~ 156 (232)
T 3igs_A 98 AQAGAAIIAVDGTA-------RQRP---VAVEALLARIHHHHLLTMADC-----SSVDDG----LACQRLG--ADIIGTT 156 (232)
T ss_dssp HHHTCSEEEEECCS-------SCCS---SCHHHHHHHHHHTTCEEEEEC-----CSHHHH----HHHHHTT--CSEEECT
T ss_pred HHcCCCEEEECccc-------cCCH---HHHHHHHHHHHHCCCEEEEeC-----CCHHHH----HHHHhCC--CCEEEEc
Confidence 99999999876421 0111 233455666677776554322 455544 4556778 8888654
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
..--.+++. ...++.+.+.++ +.. +..+-..++- .. .+--..++.+||+++++|+.+
T Consensus 157 ~~g~t~~~~---~~~~~~~~i~~l----~~~--~ipvIA~GGI-~t-~~d~~~~~~~GadgV~VGsal 213 (232)
T 3igs_A 157 MSGYTTPDT---PEEPDLPLVKAL----HDA--GCRVIAEGRY-NS-PALAAEAIRYGAWAVTVGSAI 213 (232)
T ss_dssp TTTSSSSSC---CSSCCHHHHHHH----HHT--TCCEEEESCC-CS-HHHHHHHHHTTCSEEEECHHH
T ss_pred CccCCCCCC---CCCCCHHHHHHH----Hhc--CCcEEEECCC-CC-HHHHHHHHHcCCCEEEEehHh
Confidence 221111221 122333322222 222 3323223222 22 233345578999999999865
No 340
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.52 E-value=16 Score=36.33 Aligned_cols=172 Identities=13% Similarity=0.045 Sum_probs=94.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeE-Eec-------CC--CCHHHHHHH
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETC-LTL-------GM--LNENQAYRL 781 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~-~~~-------~~--~~~e~l~~L 781 (965)
++.+++.+.+.++.+.+.|+..+...+ .+.++++++ .++.+. ..- .. .+.+.++.+
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~ 97 (229)
T 3q58_A 31 PMDKPEIVAAMAQAAASAGAVAVRIEG-------------IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDAL 97 (229)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCcEEEECC-------------HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHH
Confidence 356789999999999999999887621 234566665 455532 211 12 245678999
Q ss_pred HHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 782 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 782 k~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
+++|++.+.++.-. ...+ +...+.++.+++.|+.+.... .|.++. +.+.+.+ .+.|.++
T Consensus 98 ~~aGad~I~l~~~~-------~~~p---~~l~~~i~~~~~~g~~v~~~v-----~t~eea----~~a~~~G--ad~Ig~~ 156 (229)
T 3q58_A 98 AQAGADIIAFDASF-------RSRP---VDIDSLLTRIRLHGLLAMADC-----STVNEG----ISCHQKG--IEFIGTT 156 (229)
T ss_dssp HHHTCSEEEEECCS-------SCCS---SCHHHHHHHHHHTTCEEEEEC-----SSHHHH----HHHHHTT--CSEEECT
T ss_pred HHcCCCEEEECccc-------cCCh---HHHHHHHHHHHHCCCEEEEec-----CCHHHH----HHHHhCC--CCEEEec
Confidence 99999998776421 0111 233455566667776554321 455544 4556778 8888654
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
..--.+++ ....++. +.++-+ +.. +..+-..++- .. .+--..++.+||+++++|+.+
T Consensus 157 ~~g~t~~~---~~~~~~~-~li~~l---~~~--~ipvIA~GGI-~t-~~d~~~~~~~GadgV~VGsai 213 (229)
T 3q58_A 157 LSGYTGPI---TPVEPDL-AMVTQL---SHA--GCRVIAEGRY-NT-PALAANAIEHGAWAVTVGSAI 213 (229)
T ss_dssp TTTSSSSC---CCSSCCH-HHHHHH---HTT--TCCEEEESSC-CS-HHHHHHHHHTTCSEEEECHHH
T ss_pred CccCCCCC---cCCCCCH-HHHHHH---HHc--CCCEEEECCC-CC-HHHHHHHHHcCCCEEEEchHh
Confidence 22111122 1122233 222222 211 3322222222 22 333345688999999999755
No 341
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=89.39 E-value=8.4 Score=41.16 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeeccCC-CCcccHHHHHHHHHHHHhcCcEeEEecC-------CCCHHHHHHHHHhCCCe
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKKIGLETCLTLG-------MLNENQAYRLKKVGLDY 788 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~-------~~~~e~l~~Lk~aG~~~ 788 (965)
.++..+.++.+.+.|+++++..--... ....-.+++.++++..++.++.+.+.+. -.+.+.++.|++.|++.
T Consensus 16 ~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lGi~g 95 (372)
T 2p0o_A 16 TNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIELGVTG 95 (372)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCE
Confidence 466668888889999999876443211 1122357777888888888988877332 22456788999999998
Q ss_pred EeccCCCCHHHHhcc
Q psy8199 789 YNHNLDTSPKLYGDI 803 (965)
Q Consensus 789 i~i~~es~~~~~~~i 803 (965)
+-+..--+.+....+
T Consensus 96 lRLD~Gf~~~eia~l 110 (372)
T 2p0o_A 96 LRMDYGITIEQMAHA 110 (372)
T ss_dssp EEECSSCCHHHHHHH
T ss_pred EEEcCCCCHHHHHHH
Confidence 887743354444444
No 342
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=89.34 E-value=20 Score=38.82 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCC-----CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWREL-----KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
|.+...+.++.+++.|+.-+.++..-... ...+.+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~lk 230 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEI--VTPADIEVALDY-VDVIQ 230 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CSGGGHHHHTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEec--CCHHHHHHHHhh-CCEEE
Confidence 68999999999999999988776642110 01234444433333345898887764 467778888777 88888
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceee-cc-ccccCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI-NN-LVQIKG 868 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~-~~-~~P~~g 868 (965)
++--.. . + ...++.+.+.|.+| .+=-|..-|.+|+...++.+.+-+ -..+.+ .+ ..-+|.
T Consensus 231 Igs~~~--------~--n----~~LL~~~a~~gkPV--ilk~G~~~t~~e~~~Ave~i~~~G--n~~i~L~~rG~s~yp~ 292 (385)
T 3nvt_A 231 IGARNM--------Q--N----FELLKAAGRVDKPI--LLKRGLSATIEEFIGAAEYIMSQG--NGKIILCERGIRTYEK 292 (385)
T ss_dssp ECGGGT--------T--C----HHHHHHHHTSSSCE--EEECCTTCCHHHHHHHHHHHHTTT--CCCEEEEECCBCCSCC
T ss_pred ECcccc--------c--C----HHHHHHHHccCCcE--EEecCCCCCHHHHHHHHHHHHHcC--CCeEEEEECCCCCCCC
Confidence 873210 0 0 24455566666665 344555579999999999999877 333333 22 222232
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc----ccccccchhhHHHHhhcCccEEeeCCcccc----CCCC---CC
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMS----AGRKEMGETTQAFCFLAGANSIFYGDKLLT----TDNT---KT 937 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~----~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t----~~~~---~~ 937 (965)
.+.... .++.+...|..+. ..+-.. .+...+-..+...|+.+||++++++..+.- +++. ++
T Consensus 293 ~~~~~l-------dl~~i~~lk~~~~-lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~a~~D~~~sl~p 364 (385)
T 3nvt_A 293 ATRNTL-------DISAVPILKKETH-LPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDI 364 (385)
T ss_dssp SSSSBC-------CTTHHHHHHHHBS-SCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCSSCTTTSBCH
T ss_pred CCcccc-------CHHHHHHHHHhcC-CCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCChhhcCCcccccCCH
Confidence 122221 2333444454432 112111 111111124566789999999999976431 2221 45
Q ss_pred hhhHHHHHH
Q psy8199 938 NDDSKLLKK 946 (965)
Q Consensus 938 ~~~~~~~~~ 946 (965)
++..+|+++
T Consensus 365 ~el~~lv~~ 373 (385)
T 3nvt_A 365 PEFEEFWNA 373 (385)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 343
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=89.11 E-value=21 Score=36.21 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
.+..+.++.+.+.|+..+.+.+...- .....+++..+ ++ ..++.+-...+..++..+...+++|+|.+.++...
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~~-f~G~~~~l~~i-~~--~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~-- 138 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPHR-FGGSLLDLKRV-RE--AVDLPLLRKDFVVDPFMLEEARAFGASAALLIVAL-- 138 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCSS-SCCCHHHHHHH-HH--HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH--
T ss_pred CCHHHHHHHHHHcCCCEEEEecchhh-hccCHHHHHHH-HH--hcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccc--
Confidence 34555667777889999999765322 12234433332 22 36777777788889989999999999999998622
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCC
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 877 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~ 877 (965)
+. ++..+.++.+++.|+.+. +-. .++++.. .+.+++ .+.+.++.... |.+ .+
T Consensus 139 --l~--------~~l~~l~~~a~~lGl~~l----vev-~~~~E~~----~a~~~g--ad~IGvn~~~l---~~~----~~ 190 (254)
T 1vc4_A 139 --LG--------ELTGAYLEEARRLGLEAL----VEV-HTERELE----IALEAG--AEVLGINNRDL---ATL----HI 190 (254)
T ss_dssp --HG--------GGHHHHHHHHHHHTCEEE----EEE-CSHHHHH----HHHHHT--CSEEEEESBCT---TTC----CB
T ss_pred --hH--------HHHHHHHHHHHHCCCeEE----EEE-CCHHHHH----HHHHcC--CCEEEEccccC---cCC----CC
Confidence 11 234556667778886553 111 3555543 455667 78888886542 112 22
Q ss_pred CHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 878 DPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 878 ~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
+.+...++........++. +.++.+-.....+.. .+.. ||+++.+|+.++..
T Consensus 191 dl~~~~~L~~~i~~~~~~~-~vIAegGI~s~~dv~-~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 191 NLETAPRLGRLARKRGFGG-VLVAESGYSRKEELK-ALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp CTTHHHHHHHHHHHTTCCS-EEEEESCCCSHHHHH-TTTT-TCSEEEECHHHHTS
T ss_pred CHHHHHHHHHhCccccCCC-eEEEEcCCCCHHHHH-HHHc-CCCEEEEeHHHcCC
Confidence 3333333333221101133 223322222223333 4467 99999999976544
No 344
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=88.90 E-value=18 Score=35.20 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=99.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc---CcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~---~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
+..+.++..+.++.+.+.|+.-+.+.... + .. .+.++.+++. +..+... ...+.+.++...++|+|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~G~~~iev~~~~-~----~~---~~~i~~ir~~~~~~~~ig~~-~v~~~~~~~~a~~~Gad~i 87 (205)
T 1wa3_A 17 RANSVEEAKEKALAVFEGGVHLIEITFTV-P----DA---DTVIKELSFLKEKGAIIGAG-TVTSVEQCRKAVESGAEFI 87 (205)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEETTS-T----TH---HHHHHHTHHHHHTTCEEEEE-SCCSHHHHHHHHHHTCSEE
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeCCC-h----hH---HHHHHHHHHHCCCCcEEEec-ccCCHHHHHHHHHcCCCEE
Confidence 34678999999999999999988775442 1 12 2344444442 3444443 2357888999999999999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
++.... .+.++.+++.|+++..++ .|.++ +..+.+++ .+.+.+++ ..
T Consensus 88 -v~~~~~----------------~~~~~~~~~~g~~vi~g~-----~t~~e----~~~a~~~G--ad~vk~~~-----~~ 134 (205)
T 1wa3_A 88 -VSPHLD----------------EEISQFCKEKGVFYMPGV-----MTPTE----LVKAMKLG--HTILKLFP-----GE 134 (205)
T ss_dssp -ECSSCC----------------HHHHHHHHHHTCEEECEE-----CSHHH----HHHHHHTT--CCEEEETT-----HH
T ss_pred -EcCCCC----------------HHHHHHHHHcCCcEECCc-----CCHHH----HHHHHHcC--CCEEEEcC-----cc
Confidence 543211 246677888898876533 35555 33456778 77765431 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+ .-.+.+...+..+|+..+-..++-. ..+ -...+.+||+.+.+|..+..
T Consensus 135 ~----------~g~~~~~~l~~~~~~~pvia~GGI~--~~~-~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 135 V----------VGPQFVKAMKGPFPNVKFVPTGGVN--LDN-VCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp H----------HHHHHHHHHHTTCTTCEEEEBSSCC--TTT-HHHHHHHTCSCEEECHHHHC
T ss_pred c----------cCHHHHHHHHHhCCCCcEEEcCCCC--HHH-HHHHHHCCCCEEEECccccC
Confidence 0 1123334444455554444444332 133 33558899999999986644
No 345
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=87.48 E-value=20 Score=35.10 Aligned_cols=165 Identities=12% Similarity=0.114 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
+..+.++.+.+.|+..+.+... ..+.+.+.+.++.+++ .+..+.++ +.++.+.++|++.+.++..
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~~-----~~~~~~~~~~~~~l~~~~~~~~v~v~v~------~~~~~a~~~gad~v~l~~~ 95 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRIK-----NAPTREMYEIGKTLRQLTREYDALFFVD------DRVDVALAVDADGVQLGPE 95 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECCC-----SCCHHHHHHHHHHHHHHHHHTTCEEEEE------SCHHHHHHHTCSEEEECTT
T ss_pred hHHHHHHHHHHCCCCEEEECCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEc------ChHHHHHHcCCCEEEECCc
Confidence 4455566777889999888532 2234445555555543 46666654 4457888999999987632
Q ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 795 s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
..+ . +.++.+. .+ +++|. -.|.++.. .+.+.+ .+.+.+..+.|..+.+ .
T Consensus 96 ~~~-----------~----~~~~~~~-~~------~~~~v~~~t~~e~~----~~~~~g--~d~i~~~~~~~~~~~~--~ 145 (215)
T 1xi3_A 96 DMP-----------I----EVAKEIA-PN------LIIGASVYSLEEAL----EAEKKG--ADYLGAGSVFPTKTKE--D 145 (215)
T ss_dssp SCC-----------H----HHHHHHC-TT------SEEEEEESSHHHHH----HHHHHT--CSEEEEECSSCC------C
T ss_pred cCC-----------H----HHHHHhC-CC------CEEEEecCCHHHHH----HHHhcC--CCEEEEcCCccCCCCC--C
Confidence 211 1 1122222 22 34444 26776643 244567 7888776554432211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 874 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 874 ~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
..+ ...+.++- .+... +..+-+.++-. ..+... ++.+||+++.+|..+...
T Consensus 146 ~~~-~~~~~l~~---l~~~~-~~pvia~GGI~--~~nv~~-~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 146 ARV-IGLEGLRK---IVESV-KIPVVAIGGIN--KDNARE-VLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp CCC-CHHHHHHH---HHHHC-SSCEEEESSCC--TTTHHH-HHTTTCSEEEESHHHHTS
T ss_pred CCC-cCHHHHHH---HHHhC-CCCEEEECCcC--HHHHHH-HHHcCCCEEEEhHHHhCC
Confidence 122 22333322 22223 33344444333 244443 477999999999876543
No 346
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=87.47 E-value=21 Score=34.27 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCC-----CCHHHHHHHHHh-CCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----LNENQAYRLKKV-GLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~-----~~~e~l~~Lk~a-G~~~i 789 (965)
+.+++. .+.+...+.+++.+|. +..+.++++.+|+.+-.+.++.+. .++..++.|++. +.+.+
T Consensus 18 ~~~~l~----~al~s~~~~ifll~g~-------i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d~~ai~fL~~~~~pdGI 86 (192)
T 3kts_A 18 NQKDME----KILELDLTYMVMLETH-------VAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGI 86 (192)
T ss_dssp SSHHHH----HHTTSSCCEEEECSEE-------TTTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHHHHHHHTTCCSEE
T ss_pred CHHHHH----HHHcCCCCEEEEecCc-------HHHHHHHHHHHHHcCCeEEEecCchhccCCcHHHHHHHHhCCCCCEE
Confidence 455543 3334567777776662 234666667777766666555433 378888999873 56543
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
.- .....++.+++.|+.+-..+. +-+ -..+...++.+...+ |+.+-+. ||
T Consensus 87 Is-------------------Tk~~~i~~Ak~~gL~tIqR~F--liD-S~al~~~~~~i~~~~--PD~iEiL-----PG- 136 (192)
T 3kts_A 87 IS-------------------TRGNAIMKAKQHKMLAIQRLF--MID-SSAYNKGVALIQKVQ--PDCIELL-----PG- 136 (192)
T ss_dssp EE-------------------SCHHHHHHHHHTTCEEEEEEE--CCS-HHHHHHHHHHHHHHC--CSEEEEE-----CT-
T ss_pred Ee-------------------CcHHHHHHHHHCCCeEEEEEE--EEE-cchHHHHHHHHhhcC--CCEEEEC-----Cc-
Confidence 11 126789999999996654422 323 344567788888888 8888554 45
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+.+ +++...+.... . .-+.++.... .+.-..|+.+||+.+++++..+=
T Consensus 137 -------i~p----~iI~~i~~~~~-~-PiIaGGlI~~-~edv~~al~aGA~aVsTs~~~LW 184 (192)
T 3kts_A 137 -------IIP----EQVQKMTQKLH-I-PVIAGGLIET-SEQVNQVIASGAIAVTTSNKHLW 184 (192)
T ss_dssp -------TCH----HHHHHHHHHHC-C-CEEEESSCCS-HHHHHHHHTTTEEEEEECCGGGG
T ss_pred -------hhH----HHHHHHHHhcC-C-CEEEECCcCC-HHHHHHHHHcCCeEEEeCCHHHh
Confidence 123 23344444442 2 2244444443 44455789999999999886543
No 347
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=87.27 E-value=13 Score=38.61 Aligned_cols=210 Identities=14% Similarity=0.097 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcE-eEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~-i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
.+++++++.++ +.|+...+++..... ..+-+++.+++++-...... +.+++.. ..+.++++.+.|+..+-+..
T Consensus 53 ~~~e~~l~~~~---~~GV~~~V~v~~~~~--~~~n~~~~~~~~~~p~r~~g~~~v~P~~-~~~eL~~l~~~gv~Gi~l~~ 126 (294)
T 4i6k_A 53 ATVQSFISHLD---EHNFTHGVLVQPSFL--GTNNQAMLNAIQQYPDRLKGIAVVQHTT-TFNELVNLKAQGIVGVRLNL 126 (294)
T ss_dssp BCHHHHHHHHH---HTTCCEEEEECCGGG--TTCCHHHHHHHHHSTTTEEEEECCCTTC-CHHHHHHHHTTTEEEEEEEC
T ss_pred CCHHHHHHHHH---HcCCCeEEEecCccc--ccchHHHHHHHHHCCCeEEEEEEeCCcc-cHHHHHHHHHCCCcEEEecc
Confidence 46777776654 679999888765321 12335666666543221111 2334432 57889999988887776554
Q ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 794 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 794 es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
.... .+...-+.+...++.+.+.|+++..+. ...++.+.+..+++.. ..+.+.-+ |.|...
T Consensus 127 ~~~~------~~~~~~~~~~~~~~~a~~~glpv~iH~------~~~~l~~~~~~l~~~p---~~~Vi~H~----g~p~~~ 187 (294)
T 4i6k_A 127 FGLN------LPALNTPDWQKFLRNVESLNWQVELHA------PPKYLVQLLPQLNEYS---FDVVIDHF----GRVDPV 187 (294)
T ss_dssp TTSC------CCCSSSHHHHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHHTTSS---SCEEESGG----GCCCTT
T ss_pred CCCC------CCCcccHHHHHHHHHHHHcCCEEEEee------CcchHHHHHHHHHHCC---CCEEEECC----CCCCCC
Confidence 2210 011233678888999999999987653 1234455555555543 22222222 332211
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccc---------hhhHHHHhhcCccEEeeCCcc-ccCCC--CCChhhH
Q psy8199 874 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG---------ETTQAFCFLAGANSIFYGDKL-LTTDN--TKTNDDS 941 (965)
Q Consensus 874 ~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~---------~~~~~~~l~~Gan~~~~g~~~-~t~~~--~~~~~~~ 941 (965)
... .......+.++++ .|+.-+.+++...... ..++...-..|++.++.|... .+... .+..+.+
T Consensus 188 ~g~-~~~~~~~~~~l~~--~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~~~~y~~~~ 264 (294)
T 4i6k_A 188 KGI-EDPDYQKFLSLLN--VKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQHESLITYEDAI 264 (294)
T ss_dssp TCT-TCHHHHHHHHHCC--TTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTCTTTCCHHHHH
T ss_pred CCC-CCHHHHHHHHHHh--CCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCCcCCCCHHHHH
Confidence 111 1122223333332 4777676665332110 123333445899999988642 22211 1334567
Q ss_pred HHHHHcCCCcc
Q psy8199 942 KLLKKLGINTR 952 (965)
Q Consensus 942 ~~~~~~g~~~~ 952 (965)
+.++++++++.
T Consensus 265 ~~l~~~~~~~~ 275 (294)
T 4i6k_A 265 KAFKQIVFDKH 275 (294)
T ss_dssp HHHHHHCCCHH
T ss_pred HHHHHHCCCHH
Confidence 77888875443
No 348
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=87.26 E-value=25 Score=34.90 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.+.++.++.++.+.+.|++-+-+..- . ..-.+.++.+++. .+.+.... .++.+.++...++|.+.++.+
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~k--~------~~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTLR--S------QHGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESS--S------THHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC--C------ccHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEEeC
Confidence 45678888899999999998887421 1 1223455555542 34443333 578999999999999999866
Q ss_pred CCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC
Q psy8199 793 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 872 (965)
Q Consensus 793 ~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~ 872 (965)
+++ .+.++.+++.|+.. +.| -.|.+++.. +.+.+ .+.+.++ |
T Consensus 106 -~~d----------------~~v~~~~~~~g~~~----i~G-~~t~~e~~~----A~~~G--ad~vk~F---P------- 147 (225)
T 1mxs_A 106 -GIT----------------EDILEAGVDSEIPL----LPG-ISTPSEIMM----GYALG--YRRFKLF---P------- 147 (225)
T ss_dssp -SCC----------------HHHHHHHHHCSSCE----ECE-ECSHHHHHH----HHTTT--CCEEEET---T-------
T ss_pred -CCC----------------HHHHHHHHHhCCCE----EEe-eCCHHHHHH----HHHCC--CCEEEEc---c-------
Confidence 333 35667777788654 334 256666543 44677 7888773 2
Q ss_pred CCCCCCHHHH--HHHHHHHHHHCCCCceeccccccccchhhHHHHhh-cCccEEeeCCcc
Q psy8199 873 GSSILDPLEF--IRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL-AGANSIFYGDKL 929 (965)
Q Consensus 873 ~~~~~~~~~~--~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~-~Gan~~~~g~~~ 929 (965)
.... ...+...+-.+|+..+-..++-.. .+.. ..+. .||+.+. |..+
T Consensus 148 ------a~~~~G~~~lk~i~~~~~~ipvvaiGGI~~--~N~~-~~l~~~Ga~~v~-gSai 197 (225)
T 1mxs_A 148 ------AEISGGVAAIKAFGGPFGDIRFCPTGGVNP--ANVR-NYMALPNVMCVG-TTWM 197 (225)
T ss_dssp ------HHHHTHHHHHHHHHTTTTTCEEEEBSSCCT--TTHH-HHHHSTTBCCEE-ECTT
T ss_pred ------CccccCHHHHHHHHhhCCCCeEEEECCCCH--HHHH-HHHhccCCEEEE-Echh
Confidence 1111 344555566677654444443322 2333 3367 6999987 7654
No 349
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=87.18 E-value=12 Score=37.80 Aligned_cols=184 Identities=16% Similarity=0.103 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeec-cCCCCcc---------------cHHHHHHHHHHHHhc-CcEeEEecCCCC----
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAA-WRELKDR---------------DLDNIENMICEVKKI-GLETCLTLGMLN---- 774 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g-~~~~~~~---------------~~~~~~~~~~~i~~~-~~~i~~~~~~~~---- 774 (965)
+.++..+.++.+.+. ++.+++... .+|..+. ......+.++++++. .+.+.+-.+.-.
T Consensus 17 ~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~ 95 (248)
T 1geq_A 17 DKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRA 95 (248)
T ss_dssp CHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhc
Confidence 457888888888887 888888621 1122211 345667888888863 444443222112
Q ss_pred --HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhc
Q psy8199 775 --ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANL 851 (965)
Q Consensus 775 --~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l 851 (965)
++.++.+.++|++.+.++-... ++..+.++.+++.|+++. +++ ..|..+..+.+. +.
T Consensus 96 ~~~~~~~~~~~~Gad~v~~~~~~~-------------~~~~~~~~~~~~~g~~~~----~~i~~~t~~e~~~~~~---~~ 155 (248)
T 1geq_A 96 GVRNFLAEAKASGVDGILVVDLPV-------------FHAKEFTEIAREEGIKTV----FLAAPNTPDERLKVID---DM 155 (248)
T ss_dssp CHHHHHHHHHHHTCCEEEETTCCG-------------GGHHHHHHHHHHHTCEEE----EEECTTCCHHHHHHHH---HH
T ss_pred CHHHHHHHHHHCCCCEEEECCCCh-------------hhHHHHHHHHHHhCCCeE----EEECCCCHHHHHHHHH---hc
Confidence 5889999999999999984332 123355667778887543 355 356555544332 22
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
- ..++.+ +..+|+- ....... ...++.+...|... +..+-+.++-.. ..+.. ..+.+||+++++|..+.
T Consensus 156 ~--d~~i~~---~~~~G~~-g~~~~~~-~~~~~~i~~l~~~~-~~pi~~~GGI~~-~e~i~-~~~~~Gad~vivGsai~ 224 (248)
T 1geq_A 156 T--TGFVYL---VSLYGTT-GAREEIP-KTAYDLLRRAKRIC-RNKVAVGFGVSK-REHVV-SLLKEGANGVVVGSALV 224 (248)
T ss_dssp C--SSEEEE---ECCC--------CCC-HHHHHHHHHHHHHC-SSCEEEESCCCS-HHHHH-HHHHTTCSEEEECHHHH
T ss_pred C--CCeEEE---EECCccC-CCCCCCC-hhHHHHHHHHHhhc-CCCEEEEeecCC-HHHHH-HHHHcCCCEEEEcHHHH
Confidence 2 123333 2234421 1111112 23344444455544 333434433222 13333 44689999999998653
No 350
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}
Probab=87.18 E-value=2.8 Score=47.29 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHCC-----CCEEEEeeccCCCC------cccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHH
Q psy8199 716 SIESVITAAQKAKSDG-----ATRFCMGAAWRELK------DRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYR 780 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~ 780 (965)
+.+++++.++++.+.| +.-+-+.+-...+. ...+++++.+++.+++ ....+-+++.....++++.
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~Vaea 326 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKE 326 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHH
Confidence 8999999999999999 99888866333222 3447778888888875 1234556667777888888
Q ss_pred HHHhCCCeEe-ccCCC-CHHHHhcccCC--------------CC------HH----------------------------
Q psy8199 781 LKKVGLDYYN-HNLDT-SPKLYGDIIST--------------RD------YE---------------------------- 810 (965)
Q Consensus 781 Lk~aG~~~i~-i~~es-~~~~~~~i~~~--------------~~------~~---------------------------- 810 (965)
-.++|.+.|+ ++-.. +++.++-+.+. .+ |+
T Consensus 327 Al~aGadIINDVsg~~~d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 406 (545)
T 2bmb_A 327 AIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKT 406 (545)
T ss_dssp HHHTTCCEEEETTTTSSCTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHC
T ss_pred HHHcCCCEEEeCCCCcCChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccc
Confidence 8888888775 43333 44444221111 00 11
Q ss_pred --------HHHHHHHHHHHcCCc---eeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 811 --------NRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 811 --------~~~~~i~~~~~~Gi~---v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
...+.++.|.++|++ +...--+|++.|.++-.+.++.+.++.
T Consensus 407 ~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~ 459 (545)
T 2bmb_A 407 VLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILK 459 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcccChHHHHHHHHHHHHHH
Confidence 223467778899995 555555566788888888888888876
No 351
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=86.62 E-value=11 Score=40.55 Aligned_cols=139 Identities=12% Similarity=0.012 Sum_probs=76.7
Q ss_pred CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH-----cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCcee
Q psy8199 786 LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN-----VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVP 859 (965)
Q Consensus 786 ~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~-----~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~ 859 (965)
.|.+.+++-+ +...+..+.......+.+++++.+++ ..+++..-+ ..+.+.+++.+.++.+.+.+ .+.|.
T Consensus 177 ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi--~p~~~~~~~~~ia~~~~~aG--adgi~ 252 (367)
T 3zwt_A 177 ADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKI--APDLTSQDKEDIASVVKELG--IDGLI 252 (367)
T ss_dssp CSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEE--CSCCCHHHHHHHHHHHHHHT--CCEEE
T ss_pred CCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEe--CCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 7888888766 43333333222234455555555432 345554333 34567889999999999999 88887
Q ss_pred eccccc-cCCC---CCCCC-----CCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 860 INNLVQ-IKGT---PLYGS-----SILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 860 ~~~~~P-~~gT---~l~~~-----~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
+..-+. .+++ ++... .+.-....++++...+..++ +..+...++- .. .+-...++.+||+.+++|..+
T Consensus 253 v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI-~s-~~da~~~l~~GAd~V~vgra~ 330 (367)
T 3zwt_A 253 VTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGV-SS-GQDALEKIRAGASLVQLYTAL 330 (367)
T ss_dssp ECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSC-CS-HHHHHHHHHHTCSEEEESHHH
T ss_pred EeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCC-CC-HHHHHHHHHcCCCEEEECHHH
Confidence 653321 1111 01000 11112334567777777776 4433333332 22 333445678999999999865
Q ss_pred c
Q psy8199 930 L 930 (965)
Q Consensus 930 ~ 930 (965)
+
T Consensus 331 l 331 (367)
T 3zwt_A 331 T 331 (367)
T ss_dssp H
T ss_pred H
Confidence 4
No 352
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=86.60 E-value=30 Score=35.19 Aligned_cols=184 Identities=15% Similarity=0.070 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc------ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~------~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
|++..++.++.+++.|+.-+.++... +... ...+.+..+.+..++.|+.+.+.+- +.+.++.+.+. ++.+
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fk-prts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~ 110 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFK-PRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVM--DTRHVELVAKY-SDIL 110 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSC-CCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECC--CGGGHHHHHHH-CSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecc-cCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeC--CHHhHHHHHhh-CCEE
Confidence 58999999999999999888777652 2111 1134443333333458998877653 56668888888 8999
Q ss_pred eccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.++--+ +..+ ++.+.+.|.+| .+=-|..-|.+++.+.++.++.-+ -..+.+. ..
T Consensus 111 kIga~~~~n~~l----------------l~~~a~~~kPV--~lk~G~~~t~~e~~~Av~~i~~~G--n~~i~L~----~R 166 (262)
T 1zco_A 111 QIGARNSQNFEL----------------LKEVGKVENPV--LLKRGMGNTIQELLYSAEYIMAQG--NENVILC----ER 166 (262)
T ss_dssp EECGGGTTCHHH----------------HHHHTTSSSCE--EEECCTTCCHHHHHHHHHHHHTTT--CCCEEEE----EC
T ss_pred EECcccccCHHH----------------HHHHHhcCCcE--EEecCCCCCHHHHHHHHHHHHHCC--CCeEEEE----EC
Confidence 888422 2222 33333445554 233444458999999999998877 3333332 11
Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc---ccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 868 G-TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG---RKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 868 g-T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~---~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
| +-..+++..+.+ ++.+...|..+.-..+--+.. ...+-......++..||+++|++.++
T Consensus 167 G~~~~~~y~~~~v~--L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 167 GIRTFETATRFTLD--ISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp CBCCSCCSSSSBCC--TTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CCCCCCCcChhhcC--HHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 2 111111111111 223333444421111111211 11111255666889999999999875
No 353
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=86.37 E-value=23 Score=37.95 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc-CC
Q psy8199 747 RDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-GI 824 (965)
Q Consensus 747 ~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~-Gi 824 (965)
.+.+.+.+.++++++. ...+..+.+.-+.+.++.+.++|++.+.++... . ..+.+++.++.+++. ++
T Consensus 78 ~s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~----------G-~~~~~~~~i~~i~~~~~~ 146 (361)
T 3khj_A 78 MDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAH----------G-HSLNIIRTLKEIKSKMNI 146 (361)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSC----------C-SBHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCC----------C-CcHHHHHHHHHHHHhcCC
Confidence 3467888888888863 455666666656899999999999998876421 1 135667778887775 66
Q ss_pred ceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC-----CCCCCCCHHHHHHHHHHHHHHCCCCcee
Q psy8199 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-----YGSSILDPLEFIRTIAVARITMPTSRIR 899 (965)
Q Consensus 825 ~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l-----~~~~~~~~~~~~~~ia~~R~~lp~~~i~ 899 (965)
++.. |-..|.++ ++.+.+.+ .+.|.+. . .+|+.- .....+....+.++...++.. +..+-
T Consensus 147 ~Viv----g~v~t~e~----A~~l~~aG--aD~I~VG-~--~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~--~iPVI 211 (361)
T 3khj_A 147 DVIV----GNVVTEEA----TKELIENG--ADGIKVG-I--GPGSICTTRIVAGVGVPQITAIEKCSSVASKF--GIPII 211 (361)
T ss_dssp EEEE----EEECSHHH----HHHHHHTT--CSEEEEC-S--SCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHH--TCCEE
T ss_pred cEEE----ccCCCHHH----HHHHHHcC--cCEEEEe-c--CCCcCCCcccccCCCCCcHHHHHHHHHHHhhc--CCeEE
Confidence 5543 33356654 45566778 7888763 1 133211 011122233333332222221 22232
Q ss_pred ccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 900 MSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 900 i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
...+- ....+ -..++.+||+.+++|..+..+
T Consensus 212 A~GGI-~~~~d-i~kala~GAd~V~vGs~~~~t 242 (361)
T 3khj_A 212 ADGGI-RYSGD-IGKALAVGASSVMIGSILAGT 242 (361)
T ss_dssp EESCC-CSHHH-HHHHHHHTCSEEEESTTTTTB
T ss_pred EECCC-CCHHH-HHHHHHcCCCEEEEChhhhcC
Confidence 32222 12233 345688999999999876643
No 354
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=86.34 E-value=28 Score=37.87 Aligned_cols=159 Identities=15% Similarity=0.023 Sum_probs=80.2
Q ss_pred CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH-----c-------------CCc-eeeeEEEecCCCHHHHHHHH
Q psy8199 786 LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN-----V-------------GIN-ICCGGIIGLSESRDQRAELI 845 (965)
Q Consensus 786 ~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~-----~-------------Gi~-v~~~~i~Gl~et~ed~~~~l 845 (965)
+|.+.+++-+ +......+.......+.+++++.+.+ . .++ + .+=+..+.+.+++.+.+
T Consensus 212 ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V--~VKi~pd~~~~~i~~iA 289 (415)
T 3i65_A 212 ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLV--FVKLAPDLNQEQKKEIA 289 (415)
T ss_dssp CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEE--EEEECSCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeE--EEEecCCCCHHHHHHHH
Confidence 5666666655 43333323333344555555555432 0 233 2 23334467888999999
Q ss_pred HHHHhcCCCCCceeecccccc-CCC-CCCC-C----CCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhh
Q psy8199 846 FQLANLNPYPESVPINNLVQI-KGT-PLYG-S----SILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFL 917 (965)
Q Consensus 846 ~~l~~l~~~~~~i~~~~~~P~-~gT-~l~~-~----~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~ 917 (965)
+.+.+.+ .+.|.+..-+.. .+. .+.. . .++-....++++...+..++ +..+...++- ..+.+ ...++.
T Consensus 290 ~~a~~aG--aDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI-~s~eD-a~e~l~ 365 (415)
T 3i65_A 290 DVLLETN--IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGI-FSGLD-ALEKIE 365 (415)
T ss_dssp HHHHHHT--CSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSC-CSHHH-HHHHHH
T ss_pred HHHHHcC--CcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCC-CCHHH-HHHHHH
Confidence 9999999 888876632211 000 0000 0 11112445667777777775 3433333332 32333 445678
Q ss_pred cCccEEeeCCccccCCCCC----ChhhHHHHHHcCCC
Q psy8199 918 AGANSIFYGDKLLTTDNTK----TNDDSKLLKKLGIN 950 (965)
Q Consensus 918 ~Gan~~~~g~~~~t~~~~~----~~~~~~~~~~~g~~ 950 (965)
+||+.+++|..++..+-.- .++..+.+++.|+.
T Consensus 366 aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~G~~ 402 (415)
T 3i65_A 366 AGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYY 402 (415)
T ss_dssp HTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999997654431111 12334455666765
No 355
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=86.18 E-value=4.2 Score=39.98 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=101.9
Q ss_pred ccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 712 TKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 712 ~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.|..++++.+..++.+.+-|++-+-++.-. +.-++.++.+++. .+.+.. ...++.+.++...++|.+.+
T Consensus 19 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t--------~~a~~~I~~l~~~~p~~~IGA-GTVlt~~~a~~ai~AGA~fi 89 (217)
T 3lab_A 19 IVIDDLVHAIPMAKALVAGGVHLLEVTLRT--------EAGLAAISAIKKAVPEAIVGA-GTVCTADDFQKAIDAGAQFI 89 (217)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEETTS--------TTHHHHHHHHHHHCTTSEEEE-ECCCSHHHHHHHHHHTCSEE
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEeCCC--------ccHHHHHHHHHHHCCCCeEee-ccccCHHHHHHHHHcCCCEE
Confidence 345678999999999999999988884331 1244566666653 333333 46679999999999999776
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCC------ceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI------NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi------~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
... -.+ .+.++.++++|+ .+.. |. -|..|+... .+++ .+.+.++
T Consensus 90 vsP-~~~----------------~evi~~~~~~~v~~~~~~~~~P----G~-~TptE~~~A----~~~G--ad~vK~F-- 139 (217)
T 3lab_A 90 VSP-GLT----------------PELIEKAKQVKLDGQWQGVFLP----GV-ATASEVMIA----AQAG--ITQLKCF-- 139 (217)
T ss_dssp EES-SCC----------------HHHHHHHHHHHHHCSCCCEEEE----EE-CSHHHHHHH----HHTT--CCEEEET--
T ss_pred EeC-CCc----------------HHHHHHHHHcCCCccCCCeEeC----CC-CCHHHHHHH----HHcC--CCEEEEC--
Confidence 332 112 255677888877 4444 33 477766543 5678 7888653
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
| ... .... ..+...|--+|+..+-..++-+. .+.. .-+.+|+...+.|. .++.
T Consensus 140 -P--a~~------~gG~---~~lkal~~p~p~i~~~ptGGI~~--~N~~-~~l~aGa~~~vgGs-~l~~ 192 (217)
T 3lab_A 140 -P--ASA------IGGA---KLLKAWSGPFPDIQFCPTGGISK--DNYK-EYLGLPNVICAGGS-WLTE 192 (217)
T ss_dssp -T--TTT------TTHH---HHHHHHHTTCTTCEEEEBSSCCT--TTHH-HHHHSTTBCCEEES-GGGC
T ss_pred -c--ccc------ccCH---HHHHHHHhhhcCceEEEeCCCCH--HHHH-HHHHCCCEEEEECh-hhcC
Confidence 2 221 1122 44445566678765544443332 3333 44788987766665 4343
No 356
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=85.78 E-value=7.2 Score=41.86 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=83.1
Q ss_pred HHHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH-cCCceeeeEEEecC--CCHHHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIGLS--ESRDQRAELIFQLA 849 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~--et~ed~~~~l~~l~ 849 (965)
..+.+.++|+|.|.++.-+ .+...+.-.+ ....+...+.++.+++ .++++..-+=.|.. .+.++..+.++.+.
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~ 154 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMA 154 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHH
Confidence 3556677899999888766 4433322111 1246677777777776 47777665555663 46678889999999
Q ss_pred hcCCCCCceeeccccccCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeC
Q psy8199 850 NLNPYPESVPINNLVQIKG---TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 850 ~l~~~~~~i~~~~~~P~~g---T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g 926 (965)
+.+ .+.+.+..-....| ......++.. ...+...+..+|+..+-..++-.. .+....++. ||+.+++|
T Consensus 155 ~aG--~d~I~V~~r~~~~g~~g~~~~~~~~~~----~~~i~~ik~~~~~iPVianGgI~s--~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 155 EAG--VKVFVVHARSALLALSTKANREIPPLR----HDWVHRLKGDFPQLTFVTNGGIRS--LEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HTT--CCEEEEECSCBC----------CCCCC----HHHHHHHHHHCTTSEEEEESSCCS--HHHHHHHHT-TSSEEEEC
T ss_pred HcC--CCEEEEecCchhcccCcccccCCCccc----HHHHHHHHHhCCCCeEEEECCcCC--HHHHHHHHh-CCCEEEEC
Confidence 999 88887763322111 0000111122 233344455566554444433222 233334565 99999999
Q ss_pred CccccC
Q psy8199 927 DKLLTT 932 (965)
Q Consensus 927 ~~~~t~ 932 (965)
..++..
T Consensus 226 Ra~l~~ 231 (350)
T 3b0p_A 226 RAVYED 231 (350)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 765433
No 357
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=84.59 E-value=21 Score=35.62 Aligned_cols=169 Identities=10% Similarity=0.009 Sum_probs=92.7
Q ss_pred CCHH--HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeE-Ee-----c-CC---CCHHHHHHH
Q psy8199 715 LSIE--SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETC-LT-----L-GM---LNENQAYRL 781 (965)
Q Consensus 715 ~~~e--ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~-~~-----~-~~---~~~e~l~~L 781 (965)
.+++ ++.+.++.+.+.|+..+++. + . +.++.+++ .++.+. .. . .. .+.+.++.+
T Consensus 31 ~~~~~~~~~~~a~~~~~~G~~~i~~~-~--------~----~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~ 97 (234)
T 1yxy_A 31 YSETGGIMPLMAKAAQEAGAVGIRAN-S--------V----RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQL 97 (234)
T ss_dssp CCTTCCSHHHHHHHHHHHTCSEEEEE-S--------H----HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHH
T ss_pred cCCccchHHHHHHHHHHCCCcEeecC-C--------H----HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHH
Confidence 4466 77777788888899988873 1 1 23455554 344442 11 0 11 257889999
Q ss_pred HHhCCCeEeccCCCC--HHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCC
Q psy8199 782 KKVGLDYYNHNLDTS--PKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGL-SESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 782 k~aG~~~i~i~~es~--~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~ 856 (965)
.++|++.+.++.+.. +. +... .+.++.+++. +.. ++. ..|.++ +..+.+.+ .+
T Consensus 98 ~~~Gad~V~l~~~~~~~~~-------~~~~---~~~i~~i~~~~~~~~------v~~~~~t~~e----a~~a~~~G--ad 155 (234)
T 1yxy_A 98 AALNIAVIAMDCTKRDRHD-------GLDI---ASFIRQVKEKYPNQL------LMADISTFDE----GLVAHQAG--ID 155 (234)
T ss_dssp HTTTCSEEEEECCSSCCTT-------CCCH---HHHHHHHHHHCTTCE------EEEECSSHHH----HHHHHHTT--CS
T ss_pred HHcCCCEEEEcccccCCCC-------CccH---HHHHHHHHHhCCCCe------EEEeCCCHHH----HHHHHHcC--CC
Confidence 999999998887552 10 1122 4556666665 433 233 256655 45556677 78
Q ss_pred ce--eeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 857 SV--PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 857 ~i--~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
.+ .+..+.| ++. ...+...+.+.++ +.. +..+-..++-.. .+....++.+||+.+++|..+.
T Consensus 156 ~i~~~v~g~~~--~~~--~~~~~~~~~i~~~----~~~--~ipvia~GGI~s--~~~~~~~~~~Gad~v~vGsal~ 219 (234)
T 1yxy_A 156 FVGTTLSGYTP--YSR--QEAGPDVALIEAL----CKA--GIAVIAEGKIHS--PEEAKKINDLGVAGIVVGGAIT 219 (234)
T ss_dssp EEECTTTTSST--TSC--CSSSCCHHHHHHH----HHT--TCCEEEESCCCS--HHHHHHHHTTCCSEEEECHHHH
T ss_pred EEeeeccccCC--CCc--CCCCCCHHHHHHH----HhC--CCCEEEECCCCC--HHHHHHHHHCCCCEEEEchHHh
Confidence 88 4554433 331 1122233222222 221 333333333221 3333455789999999998653
No 358
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=84.11 E-value=35 Score=33.77 Aligned_cols=161 Identities=10% Similarity=0.048 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
..++++.++.++.+.+.|++-+-+..- . . .-.+.++.+++. .+.+.... .++.+.++...++|.+.+..
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k--~---~---~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~~ 95 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFR--S---E---AAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVVT 95 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETT--S---T---THHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecc--C---c---hHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEEE
Confidence 356788889999999999998877422 1 1 123455555543 33343343 55899999999999999976
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
+ +++ .+.++.+++.|..+-. | -.|.+++.. +.+.+ .+.+.++ | .
T Consensus 96 p-~~d----------------~~v~~~ar~~g~~~i~----G-v~t~~e~~~----A~~~G--ad~vk~F---p--a--- 139 (224)
T 1vhc_A 96 P-GLN----------------PKIVKLCQDLNFPITP----G-VNNPMAIEI----ALEMG--ISAVKFF---P--A--- 139 (224)
T ss_dssp S-SCC----------------HHHHHHHHHTTCCEEC----E-ECSHHHHHH----HHHTT--CCEEEET---T--T---
T ss_pred C-CCC----------------HHHHHHHHHhCCCEEe----c-cCCHHHHHH----HHHCC--CCEEEEe---e--C---
Confidence 6 333 3456778888876544 4 246766543 45678 7888773 3 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc-CccEEeeCCcc
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGDKL 929 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~-Gan~~~~g~~~ 929 (965)
.+.... ..+...|-.+|+..+-..++-.. .+.. ..+.+ |+..+. |..+
T Consensus 140 ---~~~gG~---~~lk~l~~~~~~ipvvaiGGI~~--~N~~-~~l~agga~~v~-gS~i 188 (224)
T 1vhc_A 140 ---EASGGV---KMIKALLGPYAQLQIMPTGGIGL--HNIR-DYLAIPNIVACG-GSWF 188 (224)
T ss_dssp ---TTTTHH---HHHHHHHTTTTTCEEEEBSSCCT--TTHH-HHHTSTTBCCEE-ECGG
T ss_pred ---ccccCH---HHHHHHHhhCCCCeEEEECCcCH--HHHH-HHHhcCCCEEEE-Echh
Confidence 112222 33444466677654433443322 2333 34777 888876 6654
No 359
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=83.91 E-value=38 Score=35.96 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-----ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD-----RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-----~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+.+..++.++.+++.|.+-+-++..-..... ...+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~--~d~~~~~~l~~~-vd~lk 194 (350)
T 1vr6_A 118 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEA--LGEDDLPKVAEY-ADIIQ 194 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--SSGGGHHHHHHH-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHHHh-CCEEE
Confidence 6899999999999999987766554321111 123333333333345899888754 467788888888 89988
Q ss_pred ccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec--ccccc
Q psy8199 791 HNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN--NLVQI 866 (965)
Q Consensus 791 i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~--~~~P~ 866 (965)
++--+ +. ..++.+.+.|.+| .+=-|+.-|.+|+...++.+..-+ -..+.+. ...-+
T Consensus 195 IgAr~~~n~----------------~LL~~va~~~kPV--ilk~G~~~tl~ei~~Ave~i~~~G--N~~viLceRG~~ty 254 (350)
T 1vr6_A 195 IGARNAQNF----------------RLLSKAGSYNKPV--LLKRGFMNTIEEFLLSAEYIANSG--NTKIILCERGIRTF 254 (350)
T ss_dssp ECGGGTTCH----------------HHHHHHHTTCSCE--EEECCTTCCHHHHHHHHHHHHHTT--CCCEEEEECCBCCS
T ss_pred ECcccccCH----------------HHHHHHHccCCcE--EEcCCCCCCHHHHHHHHHHHHHCC--CCeEEEEeCCCCCC
Confidence 88422 22 2233333445444 233333358888998888888877 3334331 01111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCceecc--ccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARIT--MPTSRIRMS--AGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~--lp~~~i~i~--~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
|+-+..... ++.+...|.. +| +.+-.+ .+...+-......|+.+||+++|++..+
T Consensus 255 p~~~~~~vd-------l~ai~~lk~~~~lp-Vi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~ 313 (350)
T 1vr6_A 255 EKATRNTLD-------ISAVPIIRKESHLP-ILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHP 313 (350)
T ss_dssp CCSSSSBCC-------TTHHHHHHHHBSSC-EEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCS
T ss_pred CCcChhhhh-------HHHHHHHHHhhCCC-EEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 211111111 2233334443 33 111111 1111111455667888999999999875
No 360
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=83.55 E-value=37 Score=33.65 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+..+ ++...+.++..++.+++..+.. +. ...+...+.|
T Consensus 25 ~~t~~~i~~lc~eA~~~~~~aVcV~p~-----------~v~~a~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Ai~~G 93 (231)
T 3ndo_A 25 EATPSDVTALVDEAADLGVFAVCVSPP-----------LVSVAAGVAPSGLAIAAVAGFPSGKHVPGIKATEAELAVAAG 93 (231)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG-----------GHHHHHHHCCTTCEEEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEECHH-----------HHHHHHHhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 367899999999999999999999222 2222223455677777744333 22 2345556679
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecC-----CCHHHHHHHHHHHHhcCCCCCce
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLS-----ESRDQRAELIFQLANLNPYPESV 858 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~-----et~ed~~~~l~~l~~l~~~~~~i 858 (965)
.+.+.+-+.- ..+ +...++...+-+..++++ |..+ -+|+-.+ .|++++....+...+.+ .++|
T Consensus 94 AdEIDmVini-----g~l-k~g~~~~v~~ei~~v~~a~~~~~l--KvIiEt~~L~~~~t~eei~~a~~ia~~aG--ADfV 163 (231)
T 3ndo_A 94 ATEIDMVIDV-----GAA-LAGDLDAVSADITAVRKAVRAATL--KVIVESAALLEFSGEPLLADVCRVARDAG--ADFV 163 (231)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTSEE--EEECCHHHHHHHTCHHHHHHHHHHHHHTT--CSEE
T ss_pred CCEEEEEeeh-----Hhh-hcccHHHHHHHHHHHHHHccCCce--EEEEECcccCCCCCHHHHHHHHHHHHHHC--cCEE
Confidence 9888665511 111 134566666666666654 4333 3444332 38999999999999999 8999
Q ss_pred eecc-ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE
Q psy8199 859 PINN-LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 859 ~~~~-~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
.-+. |.|. ...+.+++.-+.... =++..+.++++.... +.....+.+||+.
T Consensus 164 KTSTGf~~~--------~gAt~edv~lm~~~v---~~~v~VKaaGGIrt~--~~a~~~i~aGa~R 215 (231)
T 3ndo_A 164 KTSTGFHPS--------GGASVQAVEIMARTV---GERLGVKASGGIRTA--EQAAAMLDAGATR 215 (231)
T ss_dssp ECCCSCCTT--------CSCCHHHHHHHHHHH---TTTSEEEEESSCCSH--HHHHHHHHTTCSE
T ss_pred EcCCCCCCC--------CCCCHHHHHHHHHHh---CCCceEEEeCCCCCH--HHHHHHHHhcchh
Confidence 7652 2221 223444333332222 256666776655432 3344568999995
No 361
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=82.76 E-value=6.4 Score=38.72 Aligned_cols=139 Identities=11% Similarity=0.156 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEe--cCCC----CHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LGML----NENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~--~~~~----~~e~l~~Lk~aG~~~i 789 (965)
+.+...+.++.+++.|+..|.|.- .++....+.+...++++..+ ++.++++ .+.. ..+.++.|.+.|+++|
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~-Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rI 150 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGI-LTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRI 150 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECC-BCTTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEee-ECCCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHcCCCEE
Confidence 367788888999999999999843 34555677888888887664 5555552 2212 2566999999999998
Q ss_pred ecc-CCCCHHHHhcccCCCCHHHHHHHHHHHHH-cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHN-LDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~-~es~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.-+ ...+ .+..+-++.++.+.+ ++- ...+|.|-|-+.+.+.+.+ ...+ ...+-...++-.+
T Consensus 151 LTSG~~~~----------~~a~~g~~~L~~Lv~~a~~--ri~Im~GgGV~~~Ni~~l~---~~tG--v~e~H~s~i~~~~ 213 (224)
T 2bdq_A 151 LLHGSSNG----------EPIIENIKHIKALVEYANN--RIEIMVGGGVTAENYQYIC---QETG--VKQAHGTRITQMA 213 (224)
T ss_dssp EECSCSSC----------CCGGGGHHHHHHHHHHHTT--SSEEEECSSCCTTTHHHHH---HHHT--CCEEEETTCC---
T ss_pred ECCCCCCC----------CcHHHHHHHHHHHHHhhCC--CeEEEeCCCCCHHHHHHHH---HhhC--CCEEccccccCCC
Confidence 633 2111 112233344444333 222 3468888875555444432 3457 6777778788888
Q ss_pred CCCCCCC
Q psy8199 868 GTPLYGS 874 (965)
Q Consensus 868 gT~l~~~ 874 (965)
|.|++.+
T Consensus 214 ~~~~~~~ 220 (224)
T 2bdq_A 214 GDPLEHH 220 (224)
T ss_dssp -------
T ss_pred CCcchhc
Confidence 9998754
No 362
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=82.52 E-value=39 Score=33.15 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=98.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+..++++.++.++.+.+.|++-+-+..- . .. -.+.++.+++. .+.+.... .++.+.++...++|.+.+.
T Consensus 23 r~~~~~~~~~~~~al~~gGv~~iel~~k--~--~~----~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~ 93 (214)
T 1wbh_A 23 VVKKLEHAVPMAKALVAGGVRVLNVTLR--T--EC----AVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAI 93 (214)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEESC--S--TT----HHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEE
T ss_pred ECCCHHHHHHHHHHHHHcCCCEEEEeCC--C--hh----HHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEE
Confidence 4457888999999999999998888522 1 11 23455555442 34444444 7889999999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
.+ +++ .+.++.+++.|+.. +.| -.|.+++.. +.+.+ .+.+.++ | ..
T Consensus 94 ~p-~~d----------------~~v~~~~~~~g~~~----i~G-~~t~~e~~~----A~~~G--ad~v~~F---p--a~- 139 (214)
T 1wbh_A 94 SP-GLT----------------EPLLKAATEGTIPL----IPG-ISTVSELML----GMDYG--LKEFKFF---P--AE- 139 (214)
T ss_dssp ES-SCC----------------HHHHHHHHHSSSCE----EEE-ESSHHHHHH----HHHTT--CCEEEET---T--TT-
T ss_pred cC-CCC----------------HHHHHHHHHhCCCE----EEe-cCCHHHHHH----HHHCC--CCEEEEe---c--Cc-
Confidence 76 333 35667777888654 334 256666543 34677 7888773 3 11
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc-CccEEeeCCcc
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGDKL 929 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~-Gan~~~~g~~~ 929 (965)
..... ..+...+-.+|+..+-..++-.. .+.. ..+.+ |+..+. |..+
T Consensus 140 -----~~gG~---~~lk~i~~~~~~ipvvaiGGI~~--~n~~-~~l~agg~~~v~-gS~i 187 (214)
T 1wbh_A 140 -----ANGGV---KALQAIAGPFSQVRFCPTGGISP--ANYR-DYLALKSVLCIG-GSWL 187 (214)
T ss_dssp -----TTTHH---HHHHHHHTTCTTCEEEEBSSCCT--TTHH-HHHTSTTBSCEE-EGGG
T ss_pred -----cccCH---HHHHHHhhhCCCCeEEEECCCCH--HHHH-HHHhcCCCeEEE-eccc
Confidence 11222 33444455677654433443322 2333 34777 888876 6644
No 363
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=82.15 E-value=3.9 Score=44.89 Aligned_cols=74 Identities=7% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHh---cC-cEeEEecCCCCHHHHHHHHH-
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKK---IG-LETCLTLGMLNENQAYRLKK- 783 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~---~~-~~i~~~~~~~~~e~l~~Lk~- 783 (965)
.+.+++++.++++.+.|+.-+-+.+....+. ...++++...++.+++ .. ..+-+++.....++++.--+
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~VaeaAL~~ 288 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAK 288 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHHHHHHHHhh
Confidence 4578999999999999999999875333211 2346677777888876 21 25566677778999988888
Q ss_pred -hCCCe
Q psy8199 784 -VGLDY 788 (965)
Q Consensus 784 -aG~~~ 788 (965)
+|.+.
T Consensus 289 ~aGa~i 294 (442)
T 3mcm_A 289 HHDIIW 294 (442)
T ss_dssp HGGGCC
T ss_pred CCCCCE
Confidence 89876
No 364
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=81.99 E-value=39 Score=35.78 Aligned_cols=182 Identities=11% Similarity=0.125 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHCCCC-----EEEEeeccC------------CCC--------cccHHHHHHHHHHHHhcCcEeEEecC
Q psy8199 717 IESVITAAQKAKSDGAT-----RFCMGAAWR------------ELK--------DRDLDNIENMICEVKKIGLETCLTLG 771 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~-----~i~l~~g~~------------~~~--------~~~~~~~~~~~~~i~~~~~~i~~~~~ 771 (965)
.+-..+.++.+++.|+. .+-||+... ... ..+.+.+.++.+..++.|+.+.+++-
T Consensus 20 le~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~st~f 99 (350)
T 3g8r_A 20 VEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKANGFKAICTPF 99 (350)
T ss_dssp SHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcEEeccC
Confidence 45555555666666766 787875210 000 13345556666666668999887754
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+.+.++.|.+.|++.+-++=-. + ..+..++.+.+.|-++- +=-|+ -|.+|+...++++.+-
T Consensus 100 --D~~svd~l~~~~v~~~KI~S~~-------~-------~N~pLL~~va~~gKPvi--LstGm-stl~Ei~~Ave~i~~~ 160 (350)
T 3g8r_A 100 --DEESVDLIEAHGIEIIKIASCS-------F-------TDWPLLERIARSDKPVV--ASTAG-ARREDIDKVVSFMLHR 160 (350)
T ss_dssp --SHHHHHHHHHTTCCEEEECSSS-------T-------TCHHHHHHHHTSCSCEE--EECTT-CCHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHcCCCEEEECccc-------c-------cCHHHHHHHHhhCCcEE--EECCC-CCHHHHHHHHHHHHHc
Confidence 7899999999999988877311 0 11345556666666542 22333 5999999999999987
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
+ .+.+-+....-+| ||. ..--++.+...+..+|...+-.+..-..-.......|+.+||. +++..+
T Consensus 161 g--~~viLlhC~s~YP-t~~-------~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~~~~~~AAvAlGA~--vIEkH~ 226 (350)
T 3g8r_A 161 G--KDLTIMHCVAEYP-TPD-------DHLHLARIKTLRQQYAGVRIGYSTHEDPDLMEPIMLAVAQGAT--VFEKHV 226 (350)
T ss_dssp T--CCEEEEECCCCSS-CCG-------GGCCTTHHHHHHHHCTTSEEEEEECCCSSCCHHHHHHHHTTCC--EEEEEB
T ss_pred C--CCEEEEecCCCCC-CCc-------ccCCHHHHHHHHHHCCCCCEEcCCCCCCCccHHHHHHHHcCCC--EEEEec
Confidence 7 4433322222222 221 1223666777788887654433311100001234578889997 566554
No 365
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=81.81 E-value=3.3 Score=44.98 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHH---CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCC---HHHHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN---ENQAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~---~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~---~e~l~~Lk~aG~~~ 788 (965)
.++++..+.++.+.+ .++-.|-+.|.+.. .+...+.+.++..++.|+.++++.|... +...+.+...|.++
T Consensus 162 ~~~e~a~~~~~~a~~~~~~~VvG~dL~g~E~~---~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~R 238 (380)
T 4gxw_A 162 QDPDEAVAIVDWMKANRADEVAGIGIDYREND---RPPELFWKAYRDARAAGFRTTAHAGEFGMPWRNVETAVDLLHVDR 238 (380)
T ss_dssp SCHHHHHHHHHHHHHTCCTTBCEEEEESCCTT---CCGGGGHHHHHHHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCSE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeecCCCCC---CCHHHHHHHHHHHHHcCCCeeeeccccCCchHHHHHHHHHcCCcc
Confidence 456676666665544 36778888776543 3456788888888999999999998754 34455565689999
Q ss_pred EeccCCC
Q psy8199 789 YNHNLDT 795 (965)
Q Consensus 789 i~i~~es 795 (965)
|-+|+-.
T Consensus 239 IgHG~~~ 245 (380)
T 4gxw_A 239 VDHGYTI 245 (380)
T ss_dssp EEECGGG
T ss_pred cccceee
Confidence 9999866
No 366
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=81.27 E-value=29 Score=35.61 Aligned_cols=204 Identities=13% Similarity=0.114 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHC----CCCEEEEeeccC--C-----CCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHH
Q psy8199 716 SIESVITAAQKAKSD----GATRFCMGAAWR--E-----LKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 716 ~~eei~~~~~~~~~~----g~~~i~l~~g~~--~-----~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
++|++++.++.+++. ++..++-.+.+- . +.-..++.=++++++++ +.|+.+.+.. .+.+.++.+.+
T Consensus 32 ~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~Tev--~d~~~v~~l~~ 109 (285)
T 3sz8_A 32 SLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDV--HEAEQAAPVAE 109 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEEEC--CSGGGHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe--CCHHHHHHHHH
Confidence 578888888777654 455555544331 0 11112455566666665 4788887664 47788888888
Q ss_pred hCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 784 VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 784 aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
. ++.+.++--. . .+ .+.++.+.+.|.+| .+=-|+.-|.+|+...++.+++-+ -..|.+.
T Consensus 110 ~-vd~lqIgA~~--------~--~n----~~LLr~va~~gkPV--ilK~G~~~t~~ei~~ave~i~~~G--n~~i~L~-- 168 (285)
T 3sz8_A 110 I-ADVLQVPAFL--------A--RQ----TDLVVAIAKAGKPV--NVKKPQFMSPTQLKHVVSKCGEVG--NDRVMLC-- 168 (285)
T ss_dssp T-CSEEEECGGG--------T--TC----HHHHHHHHHTSSCE--EEECCTTSCGGGTHHHHHHHHHTT--CCCEEEE--
T ss_pred h-CCEEEECccc--------c--CC----HHHHHHHHccCCcE--EEeCCCCCCHHHHHHHHHHHHHcC--CCcEEEE--
Confidence 7 9988888311 0 01 12444444555554 222333347888888888888876 3333332
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cc--------------cccccchhhHHHHhhcCccEEeeCCc
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-SA--------------GRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i-~~--------------~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
.-|+-+ ..+ ...-.++.+...|..+|+..+-. +. ++-.+-..+...|+.+||++++++..
T Consensus 169 --erg~~y-~~~--~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H 243 (285)
T 3sz8_A 169 --ERGSSF-GYD--NLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH 243 (285)
T ss_dssp --ECCEEC-SSS--CEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred --eCCCCC-CCC--cCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence 123311 111 10012444555666665332322 11 11111145667889999999999876
Q ss_pred ccc----CCCC---CChhhHHHHHHc
Q psy8199 929 LLT----TDNT---KTNDDSKLLKKL 947 (965)
Q Consensus 929 ~~t----~~~~---~~~~~~~~~~~~ 947 (965)
+.- +++. ++++..+|++++
T Consensus 244 ~~pd~al~D~~~sl~p~el~~lv~~i 269 (285)
T 3sz8_A 244 PDPDRARCDGPSALPLHQLEGLLSQM 269 (285)
T ss_dssp SCGGGCSCSSCCCEEGGGHHHHHHHH
T ss_pred cChhccCCchhhccCHHHHHHHHHHH
Confidence 531 1332 456666666543
No 367
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=81.26 E-value=3.3 Score=41.50 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEee---------ccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 717 IESVITAAQKAKSDGATRFCMGA---------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~---------g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
.+++++.+.+.+ -..++|+- |+.. .....+.+.++++.+++.|+.+++=.. .+.+.++.-++.|.+
T Consensus 104 t~emi~ial~~k---P~~vtLVPEkreE~TTegGlD-v~~~~~~L~~~i~~L~~~GIrVSLFID-pd~~qI~aA~~~GAd 178 (278)
T 3gk0_A 104 TPEMLDIACEIR---PHDACLVPEKRSELTTEGGLD-VVGHFDAVRAACKQLADAGVRVSLFID-PDEAQIRAAHETGAP 178 (278)
T ss_dssp SHHHHHHHHHHC---CSEEEECCCSGGGBCSSSSBC-TTTTHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCcCCCcchh-hhccHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcC
Confidence 467777776554 57788873 1111 234578999999999999999888665 479999999999999
Q ss_pred eEeccCCCCHHHHhcccC----CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHH
Q psy8199 788 YYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGLSESRD 839 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~e 839 (965)
+|.+-- +.|..-.. ...++...++.+.+++.|+.|+. |+|-+.+
T Consensus 179 ~IELhT----G~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnA----GHGL~y~ 226 (278)
T 3gk0_A 179 VIELHT----GRYADAHDAAEQQREFERIATGVDAGIALGLKVNA----GHGLHYT 226 (278)
T ss_dssp EEEECC----HHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE----CTTCCTT
T ss_pred EEEEec----chhhccCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHH
Confidence 998754 33333221 12356777788888899998875 5653333
No 368
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=81.16 E-value=14 Score=36.73 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=81.9
Q ss_pred HHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCc
Q psy8199 778 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 857 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~ 857 (965)
...++++|++.+.++.--- ...+.+..+-++.++++|+.+ |+=.||+.|. +.+..++ +..
T Consensus 78 ~~~l~~~Ga~~VllghseR---------R~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~i 137 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEA---------PLKLNDLARLVAKAKSLGLDV----VVCAPDPRTS-----LAAAALG--PHA 137 (226)
T ss_dssp HHHHHHHTCCEEEECCTTS---------CCBHHHHHHHHHHHHHTTCEE----EEEESSHHHH-----HHHHHTC--CSE
T ss_pred HHHHHHcCCCEEEEeeeec---------cCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CCE
Confidence 8889999999999985211 122344677788899999854 3335676664 3345666 555
Q ss_pred eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 858 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 858 i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
|.+++.-- -||-..- ...++++.-++.+..|.+.++..+ +..+-... .+....+...|+|++.+|+..+...
T Consensus 138 Iayep~wa-iGtG~~v-~t~~~d~~~~~~~~ir~~~~~~~i-lyggsV~~-~n~~~~~~~~giDG~LVG~a~l~a~ 209 (226)
T 1w0m_A 138 VAVEPPEL-IGTGRAV-SRYKPEAIVETVGLVSRHFPEVSV-ITGAGIES-GDDVAAALRLGTRGVLLASAAVKAK 209 (226)
T ss_dssp EEECCGGG-TTTSCCH-HHHCHHHHHHHHHHHHHHCTTSEE-EEESSCCS-HHHHHHHHHTTCSEEEECHHHHTCS
T ss_pred EEEcChhh-hccCCCC-CCCChhHHHHHHHHHHhccCCCEE-EEeCCCCc-HHHHHHHHhCCCCEEEECHHHHCCc
Confidence 55442211 3442110 135677788888888988765533 33333232 3444455789999999999765543
No 369
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=80.49 E-value=55 Score=33.53 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+..+ ......+ .++..++.+++-.|+. +. ...+...+.|
T Consensus 70 ~~T~~dI~~lc~eA~~~g~aaVCV~P~-------~V~~a~~---~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~G 139 (288)
T 3oa3_A 70 SATGSQIDVLCAEAKEYGFATVCVRPD-------YVSRAVQ---YLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNG 139 (288)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG-------GHHHHHH---HTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEECHH-------HHHHHHH---HcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcC
Confidence 367899999999999999999999211 2233333 3345678887755432 22 2455566789
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc-CCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~-Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.+-|.+-+.- ..+ +...++...+-++.++++ +-+ ..-+|+-.+ -+.+++....+...+.+ .++|.-+
T Consensus 140 AdEIDmVINi-----g~l-k~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaG--ADfVKTS-- 208 (288)
T 3oa3_A 140 ASELDMVMNY-----PWL-SEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAG--ADYVKTS-- 208 (288)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECC--
T ss_pred CCEEEEEeeh-----hhh-cCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcC--CCEEEcC--
Confidence 9988755421 111 134566666666666663 322 244555444 57888999999999999 8998755
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
|=+. ....+.+++.-+-.+.+..-+...+.++++... .+.....+.+||+.
T Consensus 209 -----TGf~-~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt--~edAl~mi~aGA~R 259 (288)
T 3oa3_A 209 -----TGFN-GPGASIENVSLMSAVCDSLQSETRVKASGGIRT--IEDCVKMVRAGAER 259 (288)
T ss_dssp -----CSSS-SCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCS--HHHHHHHHHTTCSE
T ss_pred -----CCCC-CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHcCCce
Confidence 1111 123455554333333332235566777665443 24455668999995
No 370
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=80.09 E-value=47 Score=32.57 Aligned_cols=167 Identities=9% Similarity=0.066 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCc---EeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL---ETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~---~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
+.+++ +.+..+.+.|+..+.+- ....+.+.+.++++.+++... .+.++ +.++...++|++.+.++
T Consensus 28 ~~~~l-~~~~~~~~~G~~~v~lr-----~~~~~~~~~~~~~~~l~~~~~~~~~l~v~------~~~~~a~~~gad~v~l~ 95 (221)
T 1yad_A 28 PVEEL-ARIIITIQNEVDFIHIR-----ERSKSAADILKLLDLIFEGGIDKRKLVMN------GRVDIALFSTIHRVQLP 95 (221)
T ss_dssp CHHHH-HHHHHHHGGGCSEEEEC-----CTTSCHHHHHHHHHHHHHTTCCGGGEEEE------SCHHHHHTTTCCEEEEC
T ss_pred CcchH-HHHHHHHHCCCCEEEEc-----cCCCCHHHHHHHHHHHHHhcCcCCeEEEe------ChHHHHHHcCCCEEEeC
Confidence 34554 33666777799877662 223556777888888876432 34444 34577889999999988
Q ss_pred CCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 793 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 793 ~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
.+.. . .+.++.... |+. +|.. .|.++. ..+.+.+ .+.+.+..+++.+..
T Consensus 96 ~~~~-----------~----~~~~~~~~~-~~~------ig~sv~t~~~~----~~a~~~g--aD~i~~~~~f~~~~~-- 145 (221)
T 1yad_A 96 SGSF-----------S----PKQIRARFP-HLH------IGRSVHSLEEA----VQAEKED--ADYVLFGHVFETDCK-- 145 (221)
T ss_dssp TTSC-----------C----HHHHHHHCT-TCE------EEEEECSHHHH----HHHHHTT--CSEEEEECCC-------
T ss_pred CCcc-----------C----HHHHHHHCC-CCE------EEEEcCCHHHH----HHHHhCC--CCEEEECCccccCCC--
Confidence 5431 1 122233322 433 3331 466654 3344567 788887755332111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
...++.+ . +.+...+... +..+-+.++- . .+.-..++.+||+++.+|..+...
T Consensus 146 ~g~~~~~-~---~~l~~~~~~~-~~pvia~GGI-~--~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 146 KGLEGRG-V---SLLSDIKQRI-SIPVIAIGGM-T--PDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp -----CH-H---HHHHHHHHHC-CSCEEEESSC-C--GGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCCC-H---HHHHHHHHhC-CCCEEEECCC-C--HHHHHHHHHcCCCEEEEhHHhhCC
Confidence 0111112 2 2222233333 3334444443 2 333345578999999999877543
No 371
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=79.45 E-value=28 Score=34.52 Aligned_cols=135 Identities=8% Similarity=0.090 Sum_probs=83.7
Q ss_pred HHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHH----HHHHHHh-cC
Q psy8199 778 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE----LIFQLAN-LN 852 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~----~l~~l~~-l~ 852 (965)
...|+++|++++.+|. ...+.+. +.+-+..-+-++.+.++|+.+ |+=.|||.+++.. +.+.+.+ +.
T Consensus 74 ~~mL~d~G~~~ViiGH----SERR~~f-~Etd~~v~~Kv~~Al~~GL~p----I~CvGEtleere~g~~~t~~vv~~Ql~ 144 (233)
T 2jgq_A 74 SKHLEELKIHTLLIGH----SERRTLL-KESPSFLKEKFDFFKSKNFKI----VYCIGEELTTREKGFKAVKEFLSEQLE 144 (233)
T ss_dssp HHHHHHTTCCEEEECC----HHHHHTT-CCCHHHHHHHHHHHHHTTCEE----EEEECCCHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEeCc----hhhhccc-CCCHHHHHHHHHHHHHCCCEE----EEEcCCcHHHHhcCchhHHHHHHHHHH
Confidence 5667799999999996 3333333 345677777888999999954 2336899887775 3333333 22
Q ss_pred CC-CC--ceeecccccc--CCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccchhhHHHHhhcCccEEeeC
Q psy8199 853 PY-PE--SVPINNLVQI--KGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 853 ~~-~~--~i~~~~~~P~--~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g 926 (965)
.. .+ .+ +-.|=|. =||- ...++++..++.+..|..+ +...|--.++- + ..+...++-..++|++.+|
T Consensus 145 ~l~~~~~~~-vIAYEPvWAIGTG----~~At~e~a~ev~~~IR~~l~~~vrIlYGGSV-~-~~N~~~l~~~~diDG~LVG 217 (233)
T 2jgq_A 145 NIDLNYPNL-VVAYEPIWAIGTK----KSASLEDIYLTHGFLKQILNQKTPLLYGGSV-N-TQNAKEILGIDSVDGLLIG 217 (233)
T ss_dssp TSCTTCTTE-EEEECCGGGTTC------CCCHHHHHHHHHHHHHHSCTTSCEEEESSC-C-TTTHHHHHTSTTCCEEEES
T ss_pred hhhhhccce-EEEEeCHHHhCCC----CCCCHHHHHHHHHHHHHHHhcCCcEEEcCCc-C-hhhHHHHhcCCCCCeeEec
Confidence 00 11 11 1222332 2453 4569999999999999999 55434333322 2 2445566677999999988
Q ss_pred Cc
Q psy8199 927 DK 928 (965)
Q Consensus 927 ~~ 928 (965)
.-
T Consensus 218 gA 219 (233)
T 2jgq_A 218 SA 219 (233)
T ss_dssp GG
T ss_pred HH
Confidence 74
No 372
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=79.41 E-value=9.9 Score=40.08 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHh-cCcEeEEecCCCCH----HHHHHHHHhCCC---eEeccCCC-CHHHHhcccCCCCHHHHHHHHHH
Q psy8199 748 DLDNIENMICEVKK-IGLETCLTLGMLNE----NQAYRLKKVGLD---YYNHNLDT-SPKLYGDIISTRDYENRLNTLKN 818 (965)
Q Consensus 748 ~~~~~~~~~~~i~~-~~~~i~~~~~~~~~----e~l~~Lk~aG~~---~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~ 818 (965)
..+.+.+.++..++ .+..+..+.+..+. +.++.+.++|+| .+.+++-+ ..+....+ ..+++...+.++.
T Consensus 77 g~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~--g~~~~~~~~ii~~ 154 (314)
T 2e6f_A 77 GFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQV--AYDFEAMRTYLQQ 154 (314)
T ss_dssp CHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCG--GGSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhh--cCCHHHHHHHHHH
Confidence 34555555543322 23444444443333 334556677778 77777644 21100111 2356777777887
Q ss_pred HHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccc-------ccCCCCCCC--------CCCCCHHHH
Q psy8199 819 VRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV-------QIKGTPLYG--------SSILDPLEF 882 (965)
Q Consensus 819 ~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~-------P~~gT~l~~--------~~~~~~~~~ 882 (965)
+++. ++++..-+ ..+.+.++..+.++.+.+.+. .+.+.+.... +..+.+... ..+......
T Consensus 155 vr~~~~~Pv~vK~--~~~~~~~~~~~~a~~~~~aG~-~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~ 231 (314)
T 2e6f_A 155 VSLAYGLPFGVKM--PPYFDIAHFDTAAAVLNEFPL-VKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTA 231 (314)
T ss_dssp HHHHHCSCEEEEE--CCCCCHHHHHHHHHHHHTCTT-EEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHH
T ss_pred HHHhcCCCEEEEE--CCCCCHHHHHHHHHHHHhcCC-ceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHH
Confidence 7764 66554332 234577888888888887761 2334333211 000111100 001111233
Q ss_pred HHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc-CCCC---CChhhHHHHHHcCCCcchhhhHH
Q psy8199 883 IRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT-TDNT---KTNDDSKLLKKLGINTRNIKIKM 958 (965)
Q Consensus 883 ~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t-~~~~---~~~~~~~~~~~~g~~~~~~~~~~ 958 (965)
++.+...|..+|+..+-..++- ....+ ...++.+||+.+++|..++. .+.. -.++....+...|+. +.+++
T Consensus 232 ~~~i~~v~~~~~~ipvi~~GGI-~~~~d-a~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~~g~~---~i~~~ 306 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVFGCGGV-YSGED-AFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMARKGYR---TLEEF 306 (314)
T ss_dssp HHHHHHHHHHCTTSEEEEESSC-CSHHH-HHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHHHTCC---SSTTT
T ss_pred HHHHHHHHHhcCCCCEEEECCC-CCHHH-HHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHHcCCC---CHHHH
Confidence 4556666666666544333332 22233 34557899999999987664 3321 012334455666664 34444
Q ss_pred hhhhcc
Q psy8199 959 KNNIKQ 964 (965)
Q Consensus 959 ~~~~~~ 964 (965)
+-.+++
T Consensus 307 ~g~~~~ 312 (314)
T 2e6f_A 307 RGRVKT 312 (314)
T ss_dssp TTCCBC
T ss_pred hchHhh
Confidence 444443
No 373
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=79.32 E-value=2 Score=42.38 Aligned_cols=109 Identities=14% Similarity=0.236 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEee---------ccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 717 IESVITAAQKAKSDGATRFCMGA---------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~---------g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
.+|+++.+.+.+ -..++|+- |+.. .....+.+.+.++.+++.|+.+++-... +.+.++.-++.|.+
T Consensus 76 t~emi~ia~~~k---P~~vtLVPE~r~e~TTegGld-v~~~~~~l~~~i~~L~~~GIrVSLFIDp-d~~qi~aA~~~GA~ 150 (243)
T 1m5w_A 76 TEEMLAIAVETK---PHFCCLVPEKRQEVTTEGGLD-VAGQRDKMRDACKRLADAGIQVSLFIDA-DEEQIKAAAEVGAP 150 (243)
T ss_dssp SHHHHHHHHHHC---CSEEEECCCCSSCSSCCSCCC-SGGGHHHHHHHHHHHHHTTCEEEEEECS-CHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCcCCCcchh-HHhhHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcC
Confidence 356666665443 46677763 2222 2356899999999999999999887764 79999999999999
Q ss_pred eEeccCCCCHHHHhcccC----CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCH
Q psy8199 788 YYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGLSESR 838 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ 838 (965)
+|.+-- +.|..-.. ...++...++.+.+++.|+.|+. |+|-+.
T Consensus 151 ~IELhT----G~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgL~y 197 (243)
T 1m5w_A 151 FIEIHT----GCYADAKTDAEQAQELARIAKAATFAASLGLKVNA----GHGLTY 197 (243)
T ss_dssp EEEEEC----HHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE----ESSCCT
T ss_pred EEEEec----hhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCH
Confidence 997765 33333321 12456777888889999998875 565333
No 374
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=79.21 E-value=51 Score=32.40 Aligned_cols=169 Identities=12% Similarity=0.053 Sum_probs=89.4
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccH---HHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDL---DNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 795 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~---~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es 795 (965)
..+.++.+.+.|++.+.+...... .... ..+.+.++.+. ..+..+.++ +.++...++|++.+.++.+.
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~~--~~~~~~~~~~~~~l~~~~~~~~v~v~v~------~~~~~a~~~gad~v~l~~~~ 104 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGGD--ALTGEARIKFAEKAQAACREAGVPFIVN------DDVELALNLKADGIHIGQED 104 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTT--CCCHHHHHHHHHHHHHHHHHHTCCEEEE------SCHHHHHHHTCSEEEECTTS
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC--HhHHHHHHHHHHHHHHHHHHcCCeEEEc------CHHHHHHHcCCCEEEECCCc
Confidence 556666777789999888643222 2233 34444444443 246666654 34677889999999886432
Q ss_pred CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC
Q psy8199 796 SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874 (965)
Q Consensus 796 ~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~ 874 (965)
. .. . +..+..|. .++|+ ..|.++. ..+.+.+ .+.+.+.++.|....+ ...
T Consensus 105 ~-----------~~----~--~~~~~~g~-----~~~~~s~~t~~e~----~~a~~~g--~d~v~~~~v~~t~~~~-~~~ 155 (227)
T 2tps_A 105 A-----------NA----K--EVRAAIGD-----MILGVSAHTMSEV----KQAEEDG--ADYVGLGPIYPTETKK-DTR 155 (227)
T ss_dssp S-----------CH----H--HHHHHHTT-----SEEEEEECSHHHH----HHHHHHT--CSEEEECCSSCCCSSS-SCC
T ss_pred c-----------CH----H--HHHHhcCC-----cEEEEecCCHHHH----HHHHhCC--CCEEEECCCcCCCCCC-CCC
Confidence 1 01 1 11122453 34555 3677663 3344667 7888776555542211 001
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 875 ~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
.+.+.+.+ ...+...++..+-+.++-. ..+... ++.+||+++.+|..+...
T Consensus 156 ~~~~~~~l----~~~~~~~~~~pvia~GGI~--~~nv~~-~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 156 AVQGVSLI----EAVRRQGISIPIVGIGGIT--IDNAAP-VIQAGADGVSMISAISQA 206 (227)
T ss_dssp CCCTTHHH----HHHHHTTCCCCEEEESSCC--TTTSHH-HHHTTCSEEEESHHHHTS
T ss_pred CccCHHHH----HHHHHhCCCCCEEEEcCCC--HHHHHH-HHHcCCCEEEEhHHhhcC
Confidence 22232222 2223334423344444433 233443 467899999999876543
No 375
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=79.16 E-value=15 Score=39.86 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeecc--------CCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAW--------RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~--------~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
-+++++.+.+++..+.|...+-+...+ ......+.+.+.++++..++.++.+.++.. ..+.++...++|+
T Consensus 164 ~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~~~~g~ 241 (403)
T 3gnh_A 164 DSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAH--GASGIREAVRAGV 241 (403)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEEC--SHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHhCC
Confidence 568999999999999998877665421 112345678888898888889999888764 3556888888999
Q ss_pred CeEeccCCCCHHH
Q psy8199 787 DYYNHNLDTSPKL 799 (965)
Q Consensus 787 ~~i~i~~es~~~~ 799 (965)
+.+.+..-.+++.
T Consensus 242 ~~i~H~~~~~~~~ 254 (403)
T 3gnh_A 242 DTIEHASLVDDEG 254 (403)
T ss_dssp SEEEECTTCCHHH
T ss_pred CEEecCCcCCHHH
Confidence 9888886555443
No 376
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=78.94 E-value=58 Score=34.97 Aligned_cols=188 Identities=11% Similarity=0.059 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccCC-CCcccHHHHHHHHHHHH-hcCcEeEEec---CCCCHHHHHHHHHhCCC
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWRE-LKDRDLDNIENMICEVK-KIGLETCLTL---GMLNENQAYRLKKVGLD 787 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~-~~~~~i~~~~---~~~~~e~l~~Lk~aG~~ 787 (965)
++++++.++++++.+. +...+.+...... ......+.+.+.+..+. +.++.+.... .....+.++.+.++|++
T Consensus 45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
T 3bw2_A 45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP 124 (369)
T ss_dssp SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence 5678888877776653 2223333322111 11122333333333332 2455432211 11137789999999999
Q ss_pred eEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc--
Q psy8199 788 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ-- 865 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P-- 865 (965)
.+.+.....+ .+.++.+++.|+++...+ .|.++ +..+.+.+ .+.|.+.....
T Consensus 125 ~V~~~~g~~~---------------~~~i~~~~~~g~~v~~~v-----~t~~~----a~~a~~~G--aD~i~v~g~~~GG 178 (369)
T 3bw2_A 125 VVSFHFGVPD---------------REVIARLRRAGTLTLVTA-----TTPEE----ARAVEAAG--ADAVIAQGVEAGG 178 (369)
T ss_dssp EEEEESSCCC---------------HHHHHHHHHTTCEEEEEE-----SSHHH----HHHHHHTT--CSEEEEECTTCSE
T ss_pred EEEEeCCCCc---------------HHHHHHHHHCCCeEEEEC-----CCHHH----HHHHHHcC--CCEEEEeCCCcCC
Confidence 9888764410 234445566777654432 35554 34556677 78887742211
Q ss_pred cCCCCCCCCCC----CCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCC
Q psy8199 866 IKGTPLYGSSI----LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDN 934 (965)
Q Consensus 866 ~~gT~l~~~~~----~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~ 934 (965)
+.|+......+ .+..+.+ ...+... +..+-..++- .. .+....++..||+.+.+|..++.+..
T Consensus 179 h~g~~~~~~~~~~~~~~~~~~l---~~i~~~~-~iPViaaGGI-~~-~~~~~~~l~~GAd~V~vGs~~~~~~e 245 (369)
T 3bw2_A 179 HQGTHRDSSEDDGAGIGLLSLL---AQVREAV-DIPVVAAGGI-MR-GGQIAAVLAAGADAAQLGTAFLATDE 245 (369)
T ss_dssp ECCCSSCCGGGTTCCCCHHHHH---HHHHHHC-SSCEEEESSC-CS-HHHHHHHHHTTCSEEEESHHHHTSTT
T ss_pred cCCCcccccccccccccHHHHH---HHHHHhc-CceEEEECCC-CC-HHHHHHHHHcCCCEEEEChHHhCCcc
Confidence 12332211111 2323333 3333333 2323333322 11 33344568899999999988775543
No 377
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=78.20 E-value=23 Score=37.68 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=88.6
Q ss_pred cccHHHHHHHHHHHH--hcCcEeEEecCCCCHHHH----HHHHHhCCC-eEeccCCC-CHHHHhcccCCCCHHHHHHHHH
Q psy8199 746 DRDLDNIENMICEVK--KIGLETCLTLGMLNENQA----YRLKKVGLD-YYNHNLDT-SPKLYGDIISTRDYENRLNTLK 817 (965)
Q Consensus 746 ~~~~~~~~~~~~~i~--~~~~~i~~~~~~~~~e~l----~~Lk~aG~~-~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~ 817 (965)
....+.+++.++..+ ..+..+.++.+-.+.+.+ +.+.++|.+ .+.+++-+ +......+ ..+++...+.++
T Consensus 109 n~G~~~~~~~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l--~~~~e~l~~il~ 186 (345)
T 3oix_A 109 NLGINYYLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQI--AYDFETTDQILS 186 (345)
T ss_dssp BSCHHHHHHHHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCG--GGCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhh--cCCHHHHHHHHH
Confidence 445677777666543 234445555544444443 344445766 78888766 43211111 235666777777
Q ss_pred HHHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec-----cccccCCCCCC-------CC-CCCCHHHHH
Q psy8199 818 NVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN-----NLVQIKGTPLY-------GS-SILDPLEFI 883 (965)
Q Consensus 818 ~~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~-----~~~P~~gT~l~-------~~-~~~~~~~~~ 883 (965)
.++++ .+++..-+-. +.+.+++.+.++.+...+ ++.+... .+.....++.. .. .+.-....+
T Consensus 187 av~~~~~~PV~vKi~p--~~~~~~~a~~~~~aga~~--i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~ 262 (345)
T 3oix_A 187 EVFTYFTKPLGIKLPP--YFDIVHFDQAAAIFNXYP--LTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTAL 262 (345)
T ss_dssp HHTTTCCSCEEEEECC--CCCHHHHHHHHHHHTTSC--CSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHH
T ss_pred HHHHHhCCCeEEEECC--CCCHHHHHHHHHHhCCCc--eEEEEeecccccceeeccCccccccccccCCcCCccccHHHH
Confidence 77764 4555433332 346666666665554444 3333211 01111222211 00 112223446
Q ss_pred HHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCc
Q psy8199 884 RTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 884 ~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
+.+...+..++ +..+...++ .....+ ...++.+||+.+++|..
T Consensus 263 ~~v~~i~~~~~~~ipIIg~GG-I~s~~d-a~~~l~aGAd~V~igra 306 (345)
T 3oix_A 263 ANVHAFYKRLNPSIQIIGTGG-VXTGRD-AFEHILCGASMVQIGTA 306 (345)
T ss_dssp HHHHHHHTTSCTTSEEEEESS-CCSHHH-HHHHHHHTCSEEEESHH
T ss_pred HHHHHHHHHcCCCCcEEEECC-CCChHH-HHHHHHhCCCEEEEChH
Confidence 77777777776 343333322 232333 44557899999999976
No 378
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=77.78 E-value=19 Score=37.58 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=82.2
Q ss_pred HHHHHHHHhCCCeEeccC--CC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE-Ee--cC--CCH-HHHHHHHH
Q psy8199 776 NQAYRLKKVGLDYYNHNL--DT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI-IG--LS--ESR-DQRAELIF 846 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~~--es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i-~G--l~--et~-ed~~~~l~ 846 (965)
...+...++|++.+.+-+ .+ .++ ....+...++.+.+++.|+++-..++ .| ++ ... +.+.+.++
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~~d~~~-------~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~ 184 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWRSDEDA-------QQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAK 184 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEECTTSCH-------HHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHH
T ss_pred hhHHHHHHcCCCEEEEEEEcCCCccH-------HHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHH
Confidence 677888899999887332 12 111 12245667778888899998766543 22 22 233 55666688
Q ss_pred HHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCc-eecccccc-ccchhhHHHHhhcCccEEe
Q psy8199 847 QLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSR-IRMSAGRK-EMGETTQAFCFLAGANSIF 924 (965)
Q Consensus 847 ~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~-i~i~~~~~-~~~~~~~~~~l~~Gan~~~ 924 (965)
.+.+++ .+.+.+. .|..+|. +.+++.+++...-...+ .. +-+.++-. ..+.+.-..++.+||+++.
T Consensus 185 ~a~~lG--aD~iKv~--~~~~~~g-------~~~~~~~vv~~~~~~~~-~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~ 252 (304)
T 1to3_A 185 ELGDSG--ADLYKVE--MPLYGKG-------ARSDLLTASQRLNGHIN-MPWVILSSGVDEKLFPRAVRVAMEAGASGFL 252 (304)
T ss_dssp HHTTSS--CSEEEEC--CGGGGCS-------CHHHHHHHHHHHHHTCC-SCEEECCTTSCTTTHHHHHHHHHHTTCCEEE
T ss_pred HHHHcC--CCEEEeC--CCcCCCC-------CHHHHHHHHHhccccCC-CCeEEEecCCCHHHHHHHHHHHHHcCCeEEE
Confidence 889999 8888777 3322322 66777776665222222 22 44444442 1122334456789999999
Q ss_pred eCCccc
Q psy8199 925 YGDKLL 930 (965)
Q Consensus 925 ~g~~~~ 930 (965)
+|-.+.
T Consensus 253 vGRaI~ 258 (304)
T 1to3_A 253 AGRAVW 258 (304)
T ss_dssp ESHHHH
T ss_pred EehHHh
Confidence 998763
No 379
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=77.54 E-value=62 Score=32.47 Aligned_cols=176 Identities=7% Similarity=0.021 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
.++.++.+ ..+.|+..+.+.+... .....++++ +.+++ ..+++-.....+++-.+..-+.+|.|.+.+-.
T Consensus 64 ~dp~~iA~----~~~~GA~aiSVLTd~~-~F~Gs~~~L----~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~ 134 (258)
T 4a29_A 64 RDPIEYAK----FMERYAVGLSITTEEK-YFNGSYETL----RKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIV 134 (258)
T ss_dssp CCHHHHHH----HHTTTCSEEEEECCST-TTCCCHHHH----HHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEG
T ss_pred CCHHHHHH----HHhCCCeEEEEeCCCC-CCCCCHHHH----HHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHH
Confidence 45666543 3457999888777642 233445554 33454 57777777888999999999999999998765
Q ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 794 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 794 es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
.. -+.++..+.++.+++.|+.+-.-+ .+.+|+. .+.+++ +..|.+|.- .|..
T Consensus 135 a~-----------L~~~~l~~l~~~A~~lGl~~LvEV-----h~~~El~----rAl~~~--a~iIGINNR------nL~t 186 (258)
T 4a29_A 135 KI-----------LTERELESLLEYARSYGMEPLILI-----NDENDLD----IALRIG--ARFIGIMSR------DFET 186 (258)
T ss_dssp GG-----------SCHHHHHHHHHHHHHTTCCCEEEE-----SSHHHHH----HHHHTT--CSEEEECSB------CTTT
T ss_pred hh-----------cCHHHHHHHHHHHHHHhHHHHHhc-----chHHHHH----HHhcCC--CcEEEEeCC------Cccc
Confidence 44 123455677788999999764321 4666644 344567 888888833 2332
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 874 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 874 ~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
.. .+.+...++ +-.+|.-.+.++-+-.....+.. ....+|+|++.+|+.+++++
T Consensus 187 f~-vdl~~t~~L----~~~ip~~~~~VsESGI~t~~dv~-~l~~~G~~a~LVGealmr~~ 240 (258)
T 4a29_A 187 GE-INKENQRKL----ISMIPSNVVKVAKLGISERNEIE-ELRKLGVNAFLISSSLMRNP 240 (258)
T ss_dssp CC-BCHHHHHHH----HTTSCTTSEEEEEESSCCHHHHH-HHHHTTCCEEEECHHHHHCT
T ss_pred cc-cCHHHHHHH----HhhCCCCCEEEEcCCCCCHHHHH-HHHHCCCCEEEECHHHhCCC
Confidence 22 344444443 33567655555533223223333 44689999999999887654
No 380
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=77.54 E-value=49 Score=37.85 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHh--CCCeEe
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV--GLDYYN 790 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~a--G~~~i~ 790 (965)
..+.+++++.+++..+.|++-+.+.-|..+ ....+.+..++..+++ .++.+ ++...+.++++.--++ |.+.|+
T Consensus 336 ~~~~~~a~~~A~~~v~~GAdiIDIgpg~~~--v~~~ee~~rvv~~i~~~~~vpi--sIDT~~~~v~eaal~~~~G~~iIN 411 (566)
T 1q7z_A 336 KGNEEIVIKEAKTQVEKGAEVLDVNFGIES--QIDVRYVEKIVQTLPYVSNVPL--SLDIQNVDLTERALRAYPGRSLFN 411 (566)
T ss_dssp TTCCHHHHHHHHHHHHTTCSEEEEECSSGG--GSCHHHHHHHHHHHHHHTCSCE--EEECCCHHHHHHHHHHCSSCCEEE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCCC--CCHHHHHHHHHHHHHhhCCceE--EEeCCCHHHHHHHHHhcCCCCEEE
Confidence 357899999999999999999999754322 2335555566665554 35544 4555689999998888 876542
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe-cCCCHHHHH----HHHHHHHhcCCCC-Cceeecccc
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-LSESRDQRA----ELIFQLANLNPYP-ESVPINNLV 864 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G-l~et~ed~~----~~l~~l~~l~~~~-~~i~~~~~~ 864 (965)
.+.... ++..+.++.++++|..+...-+-| .+.|.+++. +.++.+.+.+ + +.|.+-
T Consensus 412 -----------dis~~~--~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~G--i~~~IilD--- 473 (566)
T 1q7z_A 412 -----------SAKVDE--EELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHD--FSDRVIFD--- 473 (566)
T ss_dssp -----------EEESCH--HHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTT--CGGGEEEE---
T ss_pred -----------ECCcch--hhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCC--CCCcEEEe---
Confidence 111111 334566777888887654333333 344555444 3444555556 3 334443
Q ss_pred ccCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccccc--------chhhHHHHhhcCccEEeeCC
Q psy8199 865 QIKGT-PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEM--------GETTQAFCFLAGANSIFYGD 927 (965)
Q Consensus 865 P~~gT-~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~--------~~~~~~~~l~~Gan~~~~g~ 927 (965)
||+ |+..-. ...+.++.+..+|.. ...+-+..++... ..-+...++..|++.+.+-+
T Consensus 474 --Pg~~~igfgk--~~~~~l~~~~~~~~~--g~p~l~G~Snksf~~~~~~~l~~t~a~~a~~~G~~i~rvh~ 539 (566)
T 1q7z_A 474 --PGVLPLGAEG--KPVEVLKTIEFISSK--GFNTTVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIMNP 539 (566)
T ss_dssp --CCCCCTTTTC--CHHHHHHHHHHHHHT--TCEECCBGGGGSTTSTTHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred --CCCCcccCcH--HHHHHHHHHHHHHhC--CCCEEEEeCcccccCCHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 443 111111 455666666666654 3334344434321 11223456778998876643
No 381
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=77.45 E-value=62 Score=34.62 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=88.6
Q ss_pred ccHHHHHHHHHHHHhcC-cEeEEec--CCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc-
Q psy8199 747 RDLDNIENMICEVKKIG-LETCLTL--GMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV- 822 (965)
Q Consensus 747 ~~~~~~~~~~~~i~~~~-~~i~~~~--~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~- 822 (965)
.+.+.+.+.++.+|+.+ +.+.... .....+.++.+.++|++.+.+..-. . ..+.+++.++.+++.
T Consensus 79 ~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~----------G-~~~~~~~~I~~ik~~~ 147 (366)
T 4fo4_A 79 MSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSH----------G-HSEGVLQRIRETRAAY 147 (366)
T ss_dssp SCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSC----------T-TSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCC----------C-CCHHHHHHHHHHHHhc
Confidence 35688888888888742 3333333 3457899999999999988765210 1 235677888888886
Q ss_pred -CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC-----CCCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 823 -GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-----GSSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 823 -Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~-----~~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
++++ +.|-.-|.++.. .+.+.+ .+.|.+. . .||+... ....+....+.++...++. . +.
T Consensus 148 p~v~V----i~G~v~t~e~A~----~a~~aG--AD~I~vG-~--gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~-~-~i 212 (366)
T 4fo4_A 148 PHLEI----IGGNVATAEGAR----ALIEAG--VSAVKVG-I--GPGSICTTRIVTGVGVPQITAIADAAGVANE-Y-GI 212 (366)
T ss_dssp TTCEE----EEEEECSHHHHH----HHHHHT--CSEEEEC-S--SCSTTBCHHHHHCCCCCHHHHHHHHHHHHGG-G-TC
T ss_pred CCCce----EeeeeCCHHHHH----HHHHcC--CCEEEEe-c--CCCCCCCcccccCcccchHHHHHHHHHHHhh-c-CC
Confidence 4443 334445666544 445668 7888763 1 2443211 1112222222222222221 1 22
Q ss_pred ceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 897 RIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 897 ~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
.+-...+- ....+ -..++.+||+.+++|..++.+.
T Consensus 213 PVIA~GGI-~~~~d-i~kala~GAd~V~vGs~f~~t~ 247 (366)
T 4fo4_A 213 PVIADGGI-RFSGD-ISKAIAAGASCVMVGSMFAGTE 247 (366)
T ss_dssp CEEEESCC-CSHHH-HHHHHHTTCSEEEESTTTTTBT
T ss_pred eEEEeCCC-CCHHH-HHHHHHcCCCEEEEChHhhcCC
Confidence 22222222 12233 3467899999999998766433
No 382
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=77.19 E-value=13 Score=37.55 Aligned_cols=95 Identities=14% Similarity=0.019 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHH
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 800 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~ 800 (965)
+.++.+.+.|+..+.+++.........+ -.+.++++++ ..+.+..+.|..+.+.+..+.++|++.+.++= ..+
T Consensus 155 e~~~~~~~~G~~~i~~~~~~~~g~~~g~--~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGs----al~ 228 (253)
T 1thf_D 155 DWVVEVEKRGAGEILLTSIDRDGTKSGY--DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS----VFH 228 (253)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTSCSCC--CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESH----HHH
T ss_pred HHHHHHHHCCCCEEEEEeccCCCCCCCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHH----HHH
Confidence 3344555689999998764322111111 1345555554 57888889999999999999999999998882 222
Q ss_pred hcccCCCCHHHHHHHHHHHHHcCCceee
Q psy8199 801 GDIISTRDYENRLNTLKNVRNVGINICC 828 (965)
Q Consensus 801 ~~i~~~~~~~~~~~~i~~~~~~Gi~v~~ 828 (965)
+ .+.++ .++++.+++.|+++..
T Consensus 229 ~---~~~~~---~~~~~~l~~~g~~~~~ 250 (253)
T 1thf_D 229 F---REIDV---RELKEYLKKHGVNVRL 250 (253)
T ss_dssp T---TCSCH---HHHHHHHHHTTCCCCC
T ss_pred c---CCCCH---HHHHHHHHHcCCcccc
Confidence 1 22233 4455567888887653
No 383
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=76.55 E-value=60 Score=32.23 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
.+.++|.+.++++.+.|+..+|+.-+ .. ...+ .++.. ++.++...+.. +. ...+.-.+.|
T Consensus 33 ~t~~~i~~l~~~a~~~~~~aVcv~p~-------~v-~a~~---~l~~~~~v~v~tvigFP~G~~~~~~k~~e~~~Av~~G 101 (234)
T 1n7k_A 33 ATEEDVRNLVREASDYGFRCAVLTPV-------YT-VKIS---GLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAG 101 (234)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECHH-------HH-HHHH---HHHHHHTCCEEEEESTTTCCSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEchH-------Hh-eeeh---HhCCCCCceEEEEeCCCCCCCcHHHHHHHHHHHHHcC
Confidence 57899999999999999999998322 12 2222 23344 67776654442 22 3455556679
Q ss_pred CCeEeccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 786 LDYYNHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 786 ~~~i~i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
.+.+.+-+.- ..+ .-.++..+..+.+++.|.++ -+|+-.+ -+.+++....+...+.+ .++|..+
T Consensus 102 AdEID~vinig~~~~--------~v~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaG--ADfVKTs- 168 (234)
T 1n7k_A 102 ATELDVVPHLSLGPE--------AVYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAG--ADIVKTS- 168 (234)
T ss_dssp CCEEEECCCGGGCHH--------HHHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTT--CSEEESC-
T ss_pred CCEEEEeccchHHHH--------HHHHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhC--CCEEEeC-
Confidence 9988766533 222 22445555555677777765 3344333 36889999999999999 8998755
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
|-+......+.++ .++-+ +|.... ..+.++++... .+-....+.+||+.
T Consensus 169 ------TG~~~~~gAt~~d-v~l~~-m~~~v~-v~VKaaGGirt--~~~al~~i~aGa~R 217 (234)
T 1n7k_A 169 ------TGVYTKGGDPVTV-FRLAS-LAKPLG-MGVKASGGIRS--GIDAVLAVGAGADI 217 (234)
T ss_dssp ------CSSSCCCCSHHHH-HHHHH-HHGGGT-CEEEEESSCCS--HHHHHHHHHTTCSE
T ss_pred ------CCCCCCCCCCHHH-HHHHH-HHHHHC-CCEEEecCCCC--HHHHHHHHHcCccc
Confidence 1111101123332 22211 344444 56666665543 22333457899994
No 384
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=75.80 E-value=23 Score=37.86 Aligned_cols=198 Identities=14% Similarity=0.025 Sum_probs=100.5
Q ss_pred cccHHHHHHHHHHHHh-cCcEeEEecCCCCHHH----HHHHH---HhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHH
Q psy8199 746 DRDLDNIENMICEVKK-IGLETCLTLGMLNENQ----AYRLK---KVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTL 816 (965)
Q Consensus 746 ~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~----l~~Lk---~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i 816 (965)
....+.+++.++.+++ .+..+.++..-.+.+. ++.+. ++|+|.+.+++-+ +......+ ..+++...+.+
T Consensus 108 n~G~~~~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l--~~~~e~~~~il 185 (354)
T 4ef8_A 108 NNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQV--AYDFDAMRQCL 185 (354)
T ss_dssp BCCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCG--GGSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhh--ccCHHHHHHHH
Confidence 3456676666665542 2344555442223333 34444 4678888888876 43222222 12456666667
Q ss_pred HHHHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc-c------cccCCCCCC-------CC-CCCCHH
Q psy8199 817 KNVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN-L------VQIKGTPLY-------GS-SILDPL 880 (965)
Q Consensus 817 ~~~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~-~------~P~~gT~l~-------~~-~~~~~~ 880 (965)
+.++++ .+++..-+-. +.+.+++.+.++.+.+.+. .+.|.+.. + -+...|+.. .. .++-..
T Consensus 186 ~av~~~~~~PV~vKi~p--~~d~~~~~~~a~~~~~~Gg-~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p 262 (354)
T 4ef8_A 186 TAVSEVYPHSFGVKMPP--YFDFAHFDAAAEILNEFPK-VQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLP 262 (354)
T ss_dssp HHHHHHCCSCEEEEECC--CCSHHHHHHHHHHHHTCTT-EEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHH
T ss_pred HHHHHhhCCCeEEEecC--CCCHHHHHHHHHHHHhCCC-ccEEEEecccCcceeeeccCCccccccccccCCCCCCCCch
Confidence 776663 5666544443 3467778777777777640 34443311 1 011222211 00 111113
Q ss_pred HHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCC----hhhHHHHHHcCCC
Q psy8199 881 EFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT----NDDSKLLKKLGIN 950 (965)
Q Consensus 881 ~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~----~~~~~~~~~~g~~ 950 (965)
..++++...+...++..+-..++- ....+ ...++.+||+.+++|..++..+-.-. ++....+++.|+.
T Consensus 263 ~a~~~i~~v~~~~~~ipII~~GGI-~s~~d-a~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~G~~ 334 (354)
T 4ef8_A 263 TALANINAFYRRCPGKLIFGCGGV-YTGED-AFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRYQ 334 (354)
T ss_dssp HHHHHHHHHHHHCTTSEEEEESCC-CSHHH-HHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCc-CCHHH-HHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHcCCC
Confidence 345555556655666545444433 22233 34457899999999986654421111 2334455666765
No 385
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=75.78 E-value=33 Score=38.96 Aligned_cols=173 Identities=12% Similarity=0.104 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH----hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK----KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~----~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
.+.+.++++.+.|++.+.+=.- ..+...+.+++++++ +.+..+.++. .++...++|++.++++.+
T Consensus 26 ~l~~~ve~al~~Gv~~vQlR~K-----~~~~~~~~~~a~~l~~l~~~~~v~liIND------~~dlA~~~gAdGVHLgq~ 94 (540)
T 3nl6_A 26 TLYGQVEAGLQNGVTLVQIREK-----DADTKFFIEEALQIKELCHAHNVPLIIND------RIDVAMAIGADGIHVGQD 94 (540)
T ss_dssp CHHHHHHHHHHTTCSEEEECCS-----SSCTTHHHHHHHHHHHHHHHTTCCEEECS------CSHHHHHTTCSEEEECTT
T ss_pred hHHHHHHHHHHCCCCEEEEecC-----CCCHHHHHHHHHHHHHHHHhcCCEEEEeC------cHHHHHHcCCCEEEEChh
Confidence 4566666777889998888332 222334444444443 3678877764 345566789999999976
Q ss_pred C-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCC-CCceeeccccccCCCCC
Q psy8199 795 T-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPY-PESVPINNLVQIKGTPL 871 (965)
Q Consensus 795 s-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~-~~~i~~~~~~P~~gT~l 871 (965)
. .....+ ... | .+.++|. -.|.++.... .+.+.. .+.+.+.+++|.+.-+-
T Consensus 95 dl~~~~ar----------------~~l--g----~~~iiG~S~ht~eea~~A----~~~G~~~aDYv~~Gpvf~T~tK~~ 148 (540)
T 3nl6_A 95 DMPIPMIR----------------KLV--G----PDMVIGWSVGFPEEVDEL----SKMGPDMVDYIGVGTLFPTLTKKN 148 (540)
T ss_dssp SSCHHHHH----------------HHH--C----TTSEEEEEECSHHHHHHH----HHTCC--CCEEEESCCSCCCCCC-
T ss_pred hcCHHHHH----------------HHh--C----CCCEEEEECCCHHHHHHH----HHcCCCCCCEEEEcCCCCCCCCCC
Confidence 5 322211 111 1 2356666 3677776543 333311 58899988888654332
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCCceeccccccccchhhHHHHhh--------cCccEEeeCCcccc
Q psy8199 872 YGSSILDPLEFIRTIAVARIT-MPTSRIRMSAGRKEMGETTQAFCFL--------AGANSIFYGDKLLT 931 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~-lp~~~i~i~~~~~~~~~~~~~~~l~--------~Gan~~~~g~~~~t 931 (965)
...++..++.+.++....+.. ..+..+-.-++-.. .+.. .++. +||+++.++..+..
T Consensus 149 ~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~--~ni~-~v~~~~~~~g~~~GadgvAVvsaI~~ 214 (540)
T 3nl6_A 149 PKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHP--DNIE-RVLYQCVSSNGKRSLDGICVVSDIIA 214 (540)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCT--TTHH-HHHHHCBCTTSSCBCSCEEESHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCH--HHHH-HHHHhhcccccccCceEEEEeHHHhc
Confidence 211344555555555554432 11222222222211 2233 3344 79999988876543
No 386
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=74.74 E-value=15 Score=37.19 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=58.1
Q ss_pred HHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHh
Q psy8199 723 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYG 801 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~ 801 (965)
.++++.+.|+..+.+++..........+ .+.++++++ ..+.+..+.|..+.+.++.++++|++.+.++=
T Consensus 157 ~~~~~~~~G~~~i~~~~~~~~g~~~g~~--~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgs-------- 226 (252)
T 1ka9_F 157 WAVKGVELGAGEILLTSMDRDGTKEGYD--LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAAS-------- 226 (252)
T ss_dssp HHHHHHHHTCCEEEEEETTTTTTCSCCC--HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH--------
T ss_pred HHHHHHHcCCCEEEEecccCCCCcCCCC--HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHH--------
Confidence 3444455699999887533211111111 344455554 57888999999999999999999999998871
Q ss_pred cccC-CCCHHHHHHHHHHHHHcCCcee
Q psy8199 802 DIIS-TRDYENRLNTLKNVRNVGINIC 827 (965)
Q Consensus 802 ~i~~-~~~~~~~~~~i~~~~~~Gi~v~ 827 (965)
.+.. +.++++ +.+.+.+.|+++.
T Consensus 227 al~~~~~~~~~---~~~~l~~~~~~~~ 250 (252)
T 1ka9_F 227 VFHFGEIPIPK---LKRYLAEKGVHVR 250 (252)
T ss_dssp HHHTTSSCHHH---HHHHHHHTTCCBC
T ss_pred HHHcCCCCHHH---HHHHHHHCCCCcC
Confidence 2222 234444 4445678888764
No 387
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=74.59 E-value=76 Score=33.50 Aligned_cols=103 Identities=14% Similarity=0.017 Sum_probs=56.2
Q ss_pred CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC-C---CCCCC----C-CCCCHHHHHHHHHHHHHHC
Q psy8199 823 GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK-G---TPLYG----S-SILDPLEFIRTIAVARITM 893 (965)
Q Consensus 823 Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~-g---T~l~~----~-~~~~~~~~~~~ia~~R~~l 893 (965)
++++..- +..+.+.+|..+..+.+.+.+ .+.|.+....... + .++.. . .+......++.+...+..+
T Consensus 211 ~~Pv~vK--i~~~~~~~~~~~~a~~l~~~G--vd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~ 286 (336)
T 1f76_A 211 YVPIAVK--IAPDLSEEELIQVADSLVRHN--IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLEL 286 (336)
T ss_dssp CCCEEEE--CCSCCCHHHHHHHHHHHHHTT--CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHH
T ss_pred cCceEEE--ecCCCCHHHHHHHHHHHHHcC--CcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHh
Confidence 4665443 223467888999999999999 8888876432110 0 00100 0 0000123345555556655
Q ss_pred C-CCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 894 P-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 894 p-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+ +..+ +..+-... .+....++.+||+.+++|..++.
T Consensus 287 ~~~ipV-i~~GGI~~-~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 287 NGRLPI-IGVGGIDS-VIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp TTSSCE-EEESSCCS-HHHHHHHHHHTCSEEEESHHHHH
T ss_pred CCCCCE-EEECCCCC-HHHHHHHHHCCCCEEEeeHHHHh
Confidence 4 3433 33333333 33344568899999999876543
No 388
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=73.66 E-value=76 Score=31.64 Aligned_cols=131 Identities=18% Similarity=0.085 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEec--------CCCCHHHHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--------GMLNENQAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~--------~~~~~e~l~~Lk~aG~ 786 (965)
+++..+.+.++.+-. -+..+-+..|... -.+.+.+.+.++..++.++.++.-. .-.-++-++..++.|+
T Consensus 23 lg~~~~~d~Le~~g~-yID~lKfg~Gt~~--l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf 99 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGD-YIDFVKFGWGTSA--VIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGF 99 (251)
T ss_dssp CCHHHHHHHHHHHGG-GCSEEEECTTGGG--GSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhhh-hcceEEecCceee--ecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcCcHHHHHHHHHHcCC
Confidence 666666666544333 3777778766443 3446778888888889999987732 2256888999999999
Q ss_pred CeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-------CCCHHHHHHHHHHHHhcCCCCCcee
Q psy8199 787 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------SESRDQRAELIFQLANLNPYPESVP 859 (965)
Q Consensus 787 ~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-------~et~ed~~~~l~~l~~l~~~~~~i~ 859 (965)
+.+.++--|. .-+.+++.+.++.+++.|+++-+-+ |- -.+.+++++.++.--+.+ .+.|-
T Consensus 100 ~~iEiS~G~i---------~l~~~~~~~~I~~~~~~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAG--A~~Vi 166 (251)
T 1qwg_A 100 EAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAG--ADYVI 166 (251)
T ss_dssp CEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHT--CSEEE
T ss_pred CEEEECCCcc---------cCCHHHHHHHHHHHHHCCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHCC--CcEEE
Confidence 9998885441 2457899999999999999884432 33 156788999998888888 67665
Q ss_pred ec
Q psy8199 860 IN 861 (965)
Q Consensus 860 ~~ 861 (965)
+-
T Consensus 167 iE 168 (251)
T 1qwg_A 167 IE 168 (251)
T ss_dssp EC
T ss_pred Ee
Confidence 44
No 389
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=73.49 E-value=38 Score=33.27 Aligned_cols=177 Identities=8% Similarity=-0.020 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEE--ecCCCCHHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL--TLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~--~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
.+.++.++.++.+ ..|+.-+-+. .++ .+..=.+.++.+++. +..+.+ +.-......++.+.++|++.+.
T Consensus 16 ~~~~~~~~~~~~~-~~~vd~ie~g---~~~---~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~ 88 (218)
T 3jr2_A 16 TNLTDAVAVASNV-ASYVDVIEVG---TIL---AFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWIT 88 (218)
T ss_dssp SSHHHHHHHHHHH-GGGCSEEEEC---HHH---HHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHh-cCCceEEEeC---cHH---HHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEE
Confidence 4678888888875 4466655552 121 122234566666653 333322 2222235578999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec-cccccCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN-NLVQIKGT 869 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~-~~~P~~gT 869 (965)
+-.++.+ +...++++.+++.|++.... ++|. .|.++..+ +.+.+ .+.+.+. ...| ++
T Consensus 89 vh~~~~~------------~~~~~~~~~~~~~g~~~~~d-~l~~-~T~~~~~~----~~~~g--~d~v~~~~~~~~--~~ 146 (218)
T 3jr2_A 89 VSAAAHI------------ATIAACKKVADELNGEIQIE-IYGN-WTMQDAKA----WVDLG--ITQAIYHRSRDA--EL 146 (218)
T ss_dssp EETTSCH------------HHHHHHHHHHHHHTCEEEEE-CCSS-CCHHHHHH----HHHTT--CCEEEEECCHHH--HH
T ss_pred EecCCCH------------HHHHHHHHHHHHhCCcccee-eeec-CCHHHHHH----HHHcC--ccceeeeecccc--cc
Confidence 8765532 22345667778888754210 3444 46644333 23446 6665442 1112 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
.. ...++.++.++-+. +- ++..+-+..+-. .+....++.+|||.+++|..+
T Consensus 147 --~g-~~~~~~~l~~i~~~-~~--~~~pi~v~GGI~---~~~~~~~~~aGAd~vvvGsaI 197 (218)
T 3jr2_A 147 --AG-IGWTTDDLDKMRQL-SA--LGIELSITGGIV---PEDIYLFEGIKTKTFIAGRAL 197 (218)
T ss_dssp --HT-CCSCHHHHHHHHHH-HH--TTCEEEEESSCC---GGGGGGGTTSCEEEEEESGGG
T ss_pred --CC-CcCCHHHHHHHHHH-hC--CCCCEEEECCCC---HHHHHHHHHcCCCEEEEchhh
Confidence 01 11244444433332 21 333344443332 333445789999999999865
No 390
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=73.44 E-value=38 Score=35.34 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=88.4
Q ss_pred ccHHHHHH-HHHHHHh-c-CcEeEEecCCCCHHH----HHHHHH-hCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHH
Q psy8199 747 RDLDNIEN-MICEVKK-I-GLETCLTLGMLNENQ----AYRLKK-VGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLK 817 (965)
Q Consensus 747 ~~~~~~~~-~~~~i~~-~-~~~i~~~~~~~~~e~----l~~Lk~-aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~ 817 (965)
...+.+.+ .++.+++ . +..+..+.+..+.+. .+.+.+ +|+|.+.+++-+ .... ....-..+.+...+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~-g~~~~g~~~~~~~eii~ 157 (311)
T 1ep3_A 79 PGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKH-GGQAFGTDPEVAAALVK 157 (311)
T ss_dssp CCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG-TTEEGGGCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCC-chhhhcCCHHHHHHHHH
Confidence 34455543 3445554 3 455555555444433 334445 889988887654 2100 00000125667788888
Q ss_pred HHHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc----cCCCCCC-------CC-CCCCHHHHHH
Q psy8199 818 NVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ----IKGTPLY-------GS-SILDPLEFIR 884 (965)
Q Consensus 818 ~~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P----~~gT~l~-------~~-~~~~~~~~~~ 884 (965)
.+++. ++++..-+..+. .+..+.++.+.+.+ .+.|.+..... ...|.-. .. .+......++
T Consensus 158 ~v~~~~~~pv~vk~~~~~----~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~ 231 (311)
T 1ep3_A 158 ACKAVSKVPLYVKLSPNV----TDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALK 231 (311)
T ss_dssp HHHHHCSSCEEEEECSCS----SCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHH
T ss_pred HHHHhcCCCEEEEECCCh----HHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHH
Confidence 88876 777654433333 23445567778888 78777642110 0111100 00 1111112234
Q ss_pred HHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 885 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 885 ~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
.+...|... +..+-..++- .. .+....++.+||+.+++|..++..+
T Consensus 232 ~i~~i~~~~-~ipvia~GGI-~~-~~d~~~~l~~GAd~V~vg~~~l~~p 277 (311)
T 1ep3_A 232 LIHQVAQDV-DIPIIGMGGV-AN-AQDVLEMYMAGASAVAVGTANFADP 277 (311)
T ss_dssp HHHHHHTTC-SSCEEECSSC-CS-HHHHHHHHHHTCSEEEECTHHHHCT
T ss_pred HHHHHHHhc-CCCEEEECCc-CC-HHHHHHHHHcCCCEEEECHHHHcCc
Confidence 454445444 3323333322 22 2333455789999999999876643
No 391
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=73.39 E-value=6.9 Score=38.98 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeecc-------CCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAW-------RELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~-------~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+++++.+.+.+ -..++|+--. .++.. ..+.+.+.++.+++.|+.+++=.. .+.+.++.-++.|.++|
T Consensus 75 t~emi~ial~~k---P~~vtLVPEkreE~TTegGldv-~~~~L~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GAd~I 149 (260)
T 3o6c_A 75 NDEILNLALKLK---PHRVTLVPEKREELTTEGGLCL-NHAKLKQSIEKLQNANIEVSLFIN-PSLEDIEKSKILKAQFI 149 (260)
T ss_dssp CHHHHHHHHHHC---CSEEEECCCSGGGBCTTSSBCT-TCTTHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCccCCCCChhh-CHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCCCEE
Confidence 467777776554 5678887311 11111 568899999999999999888665 47999999999999999
Q ss_pred eccCCC-CH---HHHhcccCC-------------------CCHHHHHHHHHHHHHcCCceeeeEEEecCCCH
Q psy8199 790 NHNLDT-SP---KLYGDIIST-------------------RDYENRLNTLKNVRNVGINICCGGIIGLSESR 838 (965)
Q Consensus 790 ~i~~es-~~---~~~~~i~~~-------------------~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ 838 (965)
.+--.. .. ..+..+.+. ...+...++.+.+++.|+.|++ |+|-+.
T Consensus 150 ELhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~lGL~VnA----GHGL~y 217 (260)
T 3o6c_A 150 ELHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAA----GHGLNY 217 (260)
T ss_dssp EECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE----CTTCCT
T ss_pred EEechHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEec----CCCCCH
Confidence 886433 11 111111111 1234556666777888887765 565333
No 392
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=73.35 E-value=57 Score=32.23 Aligned_cols=185 Identities=12% Similarity=0.107 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+..+ ......+.++ ++.+++..+.. +. ...+. .+.|
T Consensus 13 ~~t~~~i~~l~~~A~~~~~~aVcv~p~-------~v~~a~~~l~-----gv~v~tvigFP~G~~~~~~k~~E~~~-i~~G 79 (226)
T 1vcv_A 13 YLTVDEAVAGARKAEELGVAAYCVNPI-------YAPVVRPLLR-----KVKLCVVADFPFGALPTASRIALVSR-LAEV 79 (226)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG-------GHHHHGGGCS-----SSEEEEEESTTTCCSCHHHHHHHHHH-HTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEECHH-------HHHHHHHHhC-----CCeEEEEeCCCCCCCchHHHHHHHHH-HHCC
Confidence 367999999999999999999998322 1222222221 26776654442 22 34556 7789
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeecc-c
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINN-L 863 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~-~ 863 (965)
.+.+.+-+.- ..+ +...++...+-+..++++--....-+|+-.+ -|.+++....+...+.+ .++|..+. |
T Consensus 80 AdEID~Vini-----g~~-~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaG--ADfVKTSTGf 151 (226)
T 1vcv_A 80 ADEIDVVAPI-----GLV-KSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAG--AHFIKSSTGF 151 (226)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHT--CSEEECCCSC
T ss_pred CCEEEEecch-----hhh-cCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcC--CCEEEeCCCC
Confidence 9888666511 111 2345666666666666531112333444443 47899999999999999 89987551 1
Q ss_pred ccc-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc---Ccc
Q psy8199 864 VQI-KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GAN 921 (965)
Q Consensus 864 ~P~-~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~---Gan 921 (965)
.|. ..++.++....+.++..-+....+..-++..+.++++-.. .+.....+.+ ||+
T Consensus 152 ~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt--~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 152 AEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRT--REQAKAIVDAIGWGED 211 (226)
T ss_dssp CCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCS--HHHHHHHHHHHCSCSC
T ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHHHHCCCC
Confidence 110 0122223344566666544444444455666777766544 2223334566 988
No 393
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=73.14 E-value=46 Score=38.06 Aligned_cols=220 Identities=16% Similarity=0.092 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeeccCCCC-cccHHHHHHHHHHHHh-cCcEeEEecCCCCH-----------HHHHHHHH
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAWRELK-DRDLDNIENMICEVKK-IGLETCLTLGMLNE-----------NQAYRLKK 783 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~-~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~-----------e~l~~Lk~ 783 (965)
..+.++.++.+.+.|++++++..-..... ......-.++++++.+ ..+.+.+-.|..+. +.++.+.+
T Consensus 279 ~~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~ 358 (555)
T 1jvn_A 279 LGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 358 (555)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHH
Confidence 34788888888889999998876432110 0112235677777765 57888888888776 77999999
Q ss_pred hCCCeEeccCCC--CH-HHHhcccCCCCHHHHHHHHHHHHHcCCceeee-------------------------------
Q psy8199 784 VGLDYYNHNLDT--SP-KLYGDIISTRDYENRLNTLKNVRNVGINICCG------------------------------- 829 (965)
Q Consensus 784 aG~~~i~i~~es--~~-~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~------------------------------- 829 (965)
+|++.+.++-.. ++ +.++.=....+.+-..++.+...+.-+-+...
T Consensus 359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (555)
T 1jvn_A 359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCW 438 (555)
T ss_dssp HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEE
T ss_pred cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCccee
Confidence 999999998544 11 12222222222333333333322111222221
Q ss_pred -EEEecCC---CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc
Q psy8199 830 -GIIGLSE---SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 905 (965)
Q Consensus 830 -~i~Gl~e---t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~ 905 (965)
.++-.|. |..+..+.++.+.+++ .+.+-++.. -..||- ..++ .+.++.+ +... +..+-.+++-.
T Consensus 439 ~~v~~~Gw~~~~~~~~~e~a~~~~~~G--a~~il~t~~-~~dG~~----~G~d-~~li~~l---~~~~-~iPVIasGGi~ 506 (555)
T 1jvn_A 439 YQCTIKGGRESRDLGVWELTRACEALG--AGEILLNCI-DKDGSN----SGYD-LELIEHV---KDAV-KIPVIASSGAG 506 (555)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEECCG-GGTTTC----SCCC-HHHHHHH---HHHC-SSCEEECSCCC
T ss_pred EEEEEecCccCCCCCHHHHHHHHHHcC--CCEEEEeCC-CCCCCC----CCCC-HHHHHHH---HHhC-CccEEEECCCC
Confidence 1221232 2234667888888998 777754422 123542 1123 2333332 2223 22233333322
Q ss_pred ccchhhHHHHhh-cCccEEeeCCccccCCCCCChhhHHHHHHcCCCc
Q psy8199 906 EMGETTQAFCFL-AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINT 951 (965)
Q Consensus 906 ~~~~~~~~~~l~-~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~ 951 (965)
. ..++.. ++. .||+++++|.-+ +.+..+..+..+.+++.|+..
T Consensus 507 s-~~d~~~-~~~~~G~~gvivg~a~-~~~~~~~~e~~~~l~~~gi~~ 550 (555)
T 1jvn_A 507 V-PEHFEE-AFLKTRADACLGAGMF-HRGEFTVNDVKEYLLEHGLKV 550 (555)
T ss_dssp S-HHHHHH-HHHHSCCSEEEESHHH-HTTSCCHHHHHHHHHHTTCCC
T ss_pred C-HHHHHH-HHHhcCChHHHHHHHH-HcCCCCHHHHHHHHHHCCCcc
Confidence 2 234443 354 799999999855 555557889999999998753
No 394
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=72.23 E-value=85 Score=31.54 Aligned_cols=174 Identities=11% Similarity=0.053 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
.++.++.+...+. +..+.+.+... .....++++. .+++ .++.+-......+.-.+...+.+|.|.+.+..
T Consensus 61 ~~~~~iA~~y~~~----A~~IsVlTd~~-~F~gs~~dL~----~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~ 131 (251)
T 1i4n_A 61 ASLEDFIRMYDEL----ADAISILTEKH-YFKGDPAFVR----AARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIA 131 (251)
T ss_dssp CCHHHHHHHHHHH----CSEEEEECCCS-SSCCCTHHHH----HHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEG
T ss_pred CCHHHHHHHHHHh----CCceEEEeccc-ccCCCHHHHH----HHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEec
Confidence 3566665555443 55666654432 1222344433 3443 56666665555677778889999999998876
Q ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc-CCCCCceeeccccccCCCCCC
Q psy8199 794 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL-NPYPESVPINNLVQIKGTPLY 872 (965)
Q Consensus 794 es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l-~~~~~~i~~~~~~P~~gT~l~ 872 (965)
-. -+.++..+.++.+++.|+.+-.-+ .|.+| ++.+.++ + ++.|.++.. - +.
T Consensus 132 a~-----------l~~~~l~~l~~~a~~lGl~~lvEv-----~~~eE----~~~A~~l~g--~~iIGinnr--~----l~ 183 (251)
T 1i4n_A 132 RI-----------LTAEQIKEIYEAAEELGMDSLVEV-----HSRED----LEKVFSVIR--PKIIGINTR--D----LD 183 (251)
T ss_dssp GG-----------SCHHHHHHHHHHHHTTTCEEEEEE-----CSHHH----HHHHHTTCC--CSEEEEECB--C----TT
T ss_pred cc-----------CCHHHHHHHHHHHHHcCCeEEEEe-----CCHHH----HHHHHhcCC--CCEEEEeCc--c----cc
Confidence 32 122567778888999888653322 25555 5566778 8 899998842 1 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 873 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 873 ~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
.. ..+.+...+++ ..+|...+.++.+-.....+. ..+..+ |+++.+|+.++..
T Consensus 184 t~-~~d~~~~~~l~----~~ip~~~~vIaEsGI~t~edv-~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 184 TF-EIKKNVLWELL----PLVPDDTVVVAESGIKDPREL-KDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp TC-CBCTTHHHHHG----GGSCTTSEEEEESCCCCGGGH-HHHTTT-CSEEEECHHHHHC
T ss_pred cC-CCCHHHHHHHH----HhCCCCCEEEEeCCCCCHHHH-HHHHHh-CCEEEEcHHHcCC
Confidence 11 12323333322 235654355554433333333 455788 9999999987544
No 395
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=72.03 E-value=31 Score=34.06 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=67.4
Q ss_pred HHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCc
Q psy8199 778 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 857 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~ 857 (965)
.+.++++|++.+.++.. . +...+++..+.++.+++.|+.+- +=.+++.+. +.+.+++ ...
T Consensus 75 ~~~~~~~Gad~Vll~~s-e--------r~l~~~e~~~~~~~a~~~Gl~~i----v~v~~~~e~-----~~~~~~~--~~~ 134 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHS-E--------KRMLLADIEAVINKCKNLGLETI----VCTNNINTS-----KAVAALS--PDC 134 (219)
T ss_dssp HHHHHHHTCCEEEESBT-T--------BCCBHHHHHHHHHHHHHHTCEEE----EEESSSHHH-----HHHTTTC--CSE
T ss_pred HHHHHHcCCCEEEECCc-c--------ccCCHHHHHHHHHHHHHCCCeEE----EEeCCchHH-----HHHHhCC--CCE
Confidence 68899999999999741 0 01123445667778888888542 223455442 3345556 555
Q ss_pred eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 858 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 858 i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+.+.+.... ||-..- ...++++..+.....|.+.++..+-...+- . ..+....+...|||++++|+.++.
T Consensus 135 i~~~~~~~i-GtG~~~-~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI-~-~~~~~~~~~~~gaDgvlVGsAi~~ 204 (219)
T 2h6r_A 135 IAVEPPELI-GTGIPV-SKANPEVVEGTVRAVKEINKDVKVLCGAGI-S-KGEDVKAALDLGAEGVLLASGVVK 204 (219)
T ss_dssp EEECCCC----------------CSHHHHHHHHHHCTTCEEEECSSC-C-SHHHHHHHHTTTCCCEEESHHHHT
T ss_pred EEEEecccc-ccCCCC-ccCCHHHHHHHHHHHHhccCCCeEEEEeCc-C-cHHHHHHHhhCCCCEEEEcHHHhC
Confidence 555432211 332100 112233344555566665544333223222 2 234445567899999999986543
No 396
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=71.97 E-value=77 Score=30.97 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEE--------ecCC---CCHHHHHH
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCL--------TLGM---LNENQAYR 780 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~--------~~~~---~~~e~l~~ 780 (965)
++.+.+...+.++.+.+.|+..+.+.+ .+.++.+++ .+..+ . ..+. .+.+.++.
T Consensus 18 p~~~~~~~~~~a~~~~~~Ga~~i~~~~-------------~~~i~~i~~~~~~pv-~~~~~~~~~~~~~~i~~~~~~i~~ 83 (223)
T 1y0e_A 18 PLHSSFIMSKMALAAYEGGAVGIRANT-------------KEDILAIKETVDLPV-IGIVKRDYDHSDVFITATSKEVDE 83 (223)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEES-------------HHHHHHHHHHCCSCE-EEECBCCCTTCCCCBSCSHHHHHH
T ss_pred CCCCCccHHHHHHHHHHCCCeeeccCC-------------HHHHHHHHHhcCCCE-EeeeccCCCccccccCCcHHHHHH
Q ss_pred HHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCce
Q psy8199 781 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAELIFQLANLNPYPESV 858 (965)
Q Consensus 781 Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i 858 (965)
+.++|.+.+.++.+. ..... +...+.++.+++. |+.+.... .|.++... +.+.+ .+.+
T Consensus 84 ~~~~Gad~v~l~~~~--------~~~p~-~~~~~~i~~~~~~~~~~~v~~~~-----~t~~e~~~----~~~~G--~d~i 143 (223)
T 1y0e_A 84 LIESQCEVIALDATL--------QQRPK-ETLDELVSYIRTHAPNVEIMADI-----ATVEEAKN----AARLG--FDYI 143 (223)
T ss_dssp HHHHTCSEEEEECSC--------SCCSS-SCHHHHHHHHHHHCTTSEEEEEC-----SSHHHHHH----HHHTT--CSEE
T ss_pred HHhCCCCEEEEeeec--------ccCcc-cCHHHHHHHHHHhCCCceEEecC-----CCHHHHHH----HHHcC--CCEE
Q ss_pred eeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCCh
Q psy8199 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTN 938 (965)
Q Consensus 859 ~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~ 938 (965)
.+..... |.-..........+..+-.+.+.. +..+-..++-.. .+....++.+||+.+++|..+.. +.
T Consensus 144 ~~~~~g~---t~~~~~~~~~~~~~~~~~~~~~~~--~ipvia~GGI~~--~~~~~~~~~~Gad~v~vG~al~~-----p~ 211 (223)
T 1y0e_A 144 GTTLHGY---TSYTQGQLLYQNDFQFLKDVLQSV--DAKVIAEGNVIT--PDMYKRVMDLGVHCSVVGGAITR-----PK 211 (223)
T ss_dssp ECTTTTS---STTSTTCCTTHHHHHHHHHHHHHC--CSEEEEESSCCS--HHHHHHHHHTTCSEEEECHHHHC-----HH
T ss_pred EeCCCcC---cCCCCCCCCCcccHHHHHHHHhhC--CCCEEEecCCCC--HHHHHHHHHcCCCEEEEChHHcC-----cH
Q ss_pred hhHHHHHHc
Q psy8199 939 DDSKLLKKL 947 (965)
Q Consensus 939 ~~~~~~~~~ 947 (965)
...+.+.+.
T Consensus 212 ~~~~~~~~~ 220 (223)
T 1y0e_A 212 EITKRFVQV 220 (223)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
No 397
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=71.84 E-value=17 Score=40.64 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT- 795 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es- 795 (965)
++-.+.+..+.+.|+.-+++.+.. . .-+..++.++.+|+..+.+.+ -....+.+..+.|.++|+|.+-+|+-.
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ah-G----hs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpG 354 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQ-G----NSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSG 354 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSC-C----CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCS
T ss_pred ccHHHHHHHHHhcCCcEEEEeccc-c----ccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCC
Confidence 456778888999999988885542 2 246788999999986544433 234458999999999999999999866
Q ss_pred CHHHHhcccC-CC-CHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 796 SPKLYGDIIS-TR-DYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 796 ~~~~~~~i~~-~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
+-=+=+.+.. +. ...-..++-+.+++.|+++.+. =| .+.-|+...+ ..+ .+.|-+.
T Consensus 355 SiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIAD----GGI~~sGDi~KAl----aaG--Ad~VMlG 413 (556)
T 4af0_A 355 SICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIAD----GGIGNIGHIAKAL----ALG--ASAVMMG 413 (556)
T ss_dssp TTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEE----SCCCSHHHHHHHH----HTT--CSEEEES
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHHcCCCEEec----CCcCcchHHHHHh----hcC--CCEEEEc
Confidence 4111111111 11 3456677778888898775432 12 5666666544 345 6666555
No 398
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=71.82 E-value=42 Score=34.13 Aligned_cols=189 Identities=13% Similarity=0.075 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcC--cEeEEecCC-------CCHHHHHHHHHhCC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGM-------LNENQAYRLKKVGL 786 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~--~~i~~~~~~-------~~~e~l~~Lk~aG~ 786 (965)
+.+++.+.++++.+.|+..+++.-+ +.+... .++.+ +.++...+. ......+...+.|+
T Consensus 39 ~~~di~~~~~~a~~~~~~av~v~~~-----------~v~~~~-~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~~Ga 106 (263)
T 1w8s_A 39 DSADPEYILRLARDAGFDGVVFQRG-----------IAEKYY-DGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGA 106 (263)
T ss_dssp GGGCHHHHHHHHHHHTCSEEEECHH-----------HHHHHC-CSSSCEEEECEECCTTCCSSCCCEESSCHHHHHHTTC
T ss_pred chhhHHHHHHHHHhhCCCEEEECHH-----------HHHHhh-cCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHHCCC
Confidence 3567777777778889999998433 223322 33344 344433322 11245677788999
Q ss_pred CeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-C-C-----CHHHHHHHHHHHHhcCCCCCce
Q psy8199 787 DYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-S-E-----SRDQRAELIFQLANLNPYPESV 858 (965)
Q Consensus 787 ~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~-e-----t~ed~~~~l~~l~~l~~~~~~i 858 (965)
+.+.+-+.- +... ....++..+..+.+++.|+++-.. ..+ | + +.+.+....+...+++ .++|
T Consensus 107 ~~v~~~~nig~~~~------~~~~~~~~~v~~~~~~~~~~vIi~--~~~~G~~~~~~~s~~~i~~a~~~a~~~G--AD~v 176 (263)
T 1w8s_A 107 SAVGYTIYPGSGFE------WKMFEELARIKRDAVKFDLPLVVE--SFPRGGKVVNETAPEIVAYAARIALELG--ADAM 176 (263)
T ss_dssp SEEEEEECTTSTTH------HHHHHHHHHHHHHHHHHTCCEEEE--ECCCSTTCCCTTCHHHHHHHHHHHHHHT--CSEE
T ss_pred CEEEEEEecCCcCH------HHHHHHHHHHHHHHHHcCCeEEEE--eeCCCCccccCCCHHHHHHHHHHHHHcC--CCEE
Confidence 988664411 1100 011334455556677788886322 212 2 1 7777777788999999 8998
Q ss_pred eeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccc-cchh---hHHHHhhcCccEEeeCCccccCCC
Q psy8199 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKE-MGET---TQAFCFLAGANSIFYGDKLLTTDN 934 (965)
Q Consensus 859 ~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~-~~~~---~~~~~l~~Gan~~~~g~~~~t~~~ 934 (965)
.+. +| + +.+.+.++. ...+...+.++++-.. ...+ .-..++.+||+++..|..+....
T Consensus 177 kt~--~~--~---------~~e~~~~~~----~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~- 238 (263)
T 1w8s_A 177 KIK--YT--G---------DPKTFSWAV----KVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR- 238 (263)
T ss_dssp EEE--CC--S---------SHHHHHHHH----HHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST-
T ss_pred EEc--CC--C---------CHHHHHHHH----HhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCc-
Confidence 877 22 1 344444333 3334434556655431 1111 23345689999999998775443
Q ss_pred CCChhhHHHHH
Q psy8199 935 TKTNDDSKLLK 945 (965)
Q Consensus 935 ~~~~~~~~~~~ 945 (965)
++....+.+.
T Consensus 239 -dp~~~~~~l~ 248 (263)
T 1w8s_A 239 -DALKFARALA 248 (263)
T ss_dssp -THHHHHHHHH
T ss_pred -CHHHHHHHHH
Confidence 3444444443
No 399
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=71.60 E-value=53 Score=33.41 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCc-eeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------------CCCC
Q psy8199 812 RLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------------SILD 878 (965)
Q Consensus 812 ~~~~i~~~~~~Gi~-v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------------~~~~ 878 (965)
..+.++.+++.|-+ +..+++.|. -+.+...+.++.+.+-+ .+.+-+. +|+. -|+.+- ...+
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGd-P~~~~~~~~~~~l~~~G--aD~iElg--iPfS-DP~aDGp~Iq~a~~~AL~~G~~ 78 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGD-PSPELSLKIIQTLVDNG--ADALELG--FPFS-DPLADGPVIQGANLRSLAAGTT 78 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTS-SCHHHHHHHHHHHHHTT--CSSEEEE--CCCS-CCTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC-CCHHHHHHHHHHHHHcC--CCEEEEC--CCCC-CCCCCCHHHHHHHHHHHHcCCC
Confidence 34556667766654 344444443 45677888888888888 8888888 6653 456542 2345
Q ss_pred HHHHHHHHHHHHHHCCCCceecccccccc---c-hhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCC
Q psy8199 879 PLEFIRTIAVARITMPTSRIRMSAGRKEM---G-ETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950 (965)
Q Consensus 879 ~~~~~~~ia~~R~~lp~~~i~i~~~~~~~---~-~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~ 950 (965)
...+++++...|...++..+.+.++++.. + ..+...+..+|++++++.+-. .. ...+..+.+++.|+.
T Consensus 79 ~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp--~e--e~~~~~~~~~~~gl~ 150 (267)
T 3vnd_A 79 SSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVP--VE--ESAPFSKAAKAHGIA 150 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSC--GG--GCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCC--Hh--hHHHHHHHHHHcCCe
Confidence 66888999999987556667788888753 2 345667788999998887632 11 245667777777765
No 400
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=71.45 E-value=89 Score=31.46 Aligned_cols=176 Identities=11% Similarity=0.124 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG~ 786 (965)
.+.++|.+.++++.+.|+..+|+..+ ......+. ++..++.+++-.|.. +. ...+...+.|.
T Consensus 56 ~t~~~I~~lc~eA~~~~~aaVCV~p~-------~V~~a~~~---L~gs~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GA 125 (260)
T 3r12_A 56 ATPDDIKKLCLEARENRFHGVCVNPC-------YVKLAREE---LEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGA 125 (260)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECGG-------GHHHHHHH---HTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcCCcEEEECHH-------HHHHHHHH---hcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCC
Confidence 67899999999999999999999222 23333333 345677877744333 22 23445556799
Q ss_pred CeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 787 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 787 ~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
+-+.+-+.- ..+ +...++...+-+..++++ |.. .-+|+-.+ -|++++....+...+.+ .++|.-+
T Consensus 126 dEIDmViNi-----g~l-k~g~~~~v~~eI~~v~~a~~~~~--lKVIlEt~~Lt~eei~~A~~ia~eaG--ADfVKTS-- 193 (260)
T 3r12_A 126 DEIDMVINV-----GML-KAKEWEYVYEDIRSVVESVKGKV--VKVIIETCYLDTEEKIAACVISKLAG--AHFVKTS-- 193 (260)
T ss_dssp SEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTSE--EEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECC--
T ss_pred CEEEEEeeh-----hhh-ccccHHHHHHHHHHHHHhcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHhC--cCEEEcC--
Confidence 888765521 111 133566666666666654 333 34555444 58899999999999999 8998755
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
|-+.. ...+.++..-+-.. .=++..+.++++.... +.....+.+||+.+
T Consensus 194 -----TGf~~-~GAT~edV~lm~~~---vg~~v~VKaAGGIrt~--~~al~mi~aGA~Ri 242 (260)
T 3r12_A 194 -----TGFGT-GGATAEDVHLMKWI---VGDEMGVKASGGIRTF--EDAVKMIMYGADRI 242 (260)
T ss_dssp -----CSSSS-CCCCHHHHHHHHHH---HCTTSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred -----CCCCC-CCCCHHHHHHHHHH---hCCCceEEEeCCCCCH--HHHHHHHHcCCcee
Confidence 22211 22344443333222 2355666666655432 33445689999953
No 401
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*
Probab=70.86 E-value=13 Score=40.91 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC--------CCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR--------ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~--------~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
-+++++.+.+++..+.|+..+-+...+. .....+.+.+.++++..++.++.+.++.. ..+.++...++|+
T Consensus 172 ~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~al~~G~ 249 (426)
T 2r8c_A 172 DGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAY--TPAAIARAVRCGV 249 (426)
T ss_dssp CSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEEC--SHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeC--ChHHHHHHHHcCC
Confidence 4689999999988888877666543211 11234578888888888888988888776 5667788888999
Q ss_pred CeEeccCCCCHHHHh
Q psy8199 787 DYYNHNLDTSPKLYG 801 (965)
Q Consensus 787 ~~i~i~~es~~~~~~ 801 (965)
+.+.+..-.+++.++
T Consensus 250 ~~i~H~~~~~~~~~~ 264 (426)
T 2r8c_A 250 RTIEHGNLIDDETAR 264 (426)
T ss_dssp SEEEECTTCCHHHHH
T ss_pred CEEecCCcCCHHHHH
Confidence 998887655554443
No 402
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=70.58 E-value=1.1e+02 Score=32.17 Aligned_cols=163 Identities=12% Similarity=0.169 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHh-cCcEeEEecCCC---CHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcC
Q psy8199 748 DLDNIENMICEVKK-IGLETCLTLGML---NENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG 823 (965)
Q Consensus 748 ~~~~~~~~~~~i~~-~~~~i~~~~~~~---~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~G 823 (965)
+.+.+.+.++.+++ ....+.++.... ..+.++.+.++|++.+.++.... .+.++.+++.|
T Consensus 47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g~p----------------~~~i~~l~~~g 110 (332)
T 2z6i_A 47 PKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGNP----------------SKYMERFHEAG 110 (332)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSSCG----------------GGTHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCCCh----------------HHHHHHHHHcC
Confidence 35667777777775 233344443321 26778999999999999886421 12345566678
Q ss_pred CceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8199 824 INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 903 (965)
Q Consensus 824 i~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~ 903 (965)
+++...+ .+.++ ++.+.+.+ .+.+.+... ..|... ......++++ ..+... +..+-..++
T Consensus 111 ~~v~~~v-----~~~~~----a~~~~~~G--aD~i~v~g~--~~GG~~---g~~~~~~ll~---~i~~~~-~iPViaaGG 170 (332)
T 2z6i_A 111 IIVIPVV-----PSVAL----AKRMEKIG--ADAVIAEGM--EAGGHI---GKLTTMTLVR---QVATAI-SIPVIAAGG 170 (332)
T ss_dssp CEEEEEE-----SSHHH----HHHHHHTT--CSCEEEECT--TSSEEC---CSSCHHHHHH---HHHHHC-SSCEEEESS
T ss_pred CeEEEEe-----CCHHH----HHHHHHcC--CCEEEEECC--CCCCCC---CCccHHHHHH---HHHHhc-CCCEEEECC
Confidence 7665332 45443 44566777 788877532 112111 1123333333 223333 232333332
Q ss_pred ccccchhhHHHHhhcCccEEeeCCccccCCCC-CChhhHHHHHHcC
Q psy8199 904 RKEMGETTQAFCFLAGANSIFYGDKLLTTDNT-KTNDDSKLLKKLG 948 (965)
Q Consensus 904 ~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~-~~~~~~~~~~~~g 948 (965)
-.. .+....++..||+++.+|..++.+... ..+...+++.+..
T Consensus 171 I~~--~~~~~~al~~GAdgV~vGs~~l~~~e~~~~~~~k~~~~~~~ 214 (332)
T 2z6i_A 171 IAD--GEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKILKAR 214 (332)
T ss_dssp CCS--HHHHHHHHHTTCSEEEECHHHHTBTTCCSCHHHHHHHHHCC
T ss_pred CCC--HHHHHHHHHcCCCEEEecHHHhcCccccccHHHHHHHHhCC
Confidence 221 233345678999999999887765532 4556667676654
No 403
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=70.58 E-value=66 Score=33.14 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHC----CCCEEEEeeccC-C-CC-----cccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHH
Q psy8199 716 SIESVITAAQKAKSD----GATRFCMGAAWR-E-LK-----DRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 716 ~~eei~~~~~~~~~~----g~~~i~l~~g~~-~-~~-----~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
|+|++++.++.+++. ++..++-.+.+- | .. -..++.=++++++++ +.|+.+.+.+ .+.+.++.+.+
T Consensus 53 s~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev--~D~~~v~~l~~ 130 (298)
T 3fs2_A 53 TRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDI--HTEEQCAAVAP 130 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEEEC--CSHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe--CCHHHHHHHHh
Confidence 578888888777654 455455443331 1 00 011344555666655 4788887664 58999999988
Q ss_pred hCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 784 VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 784 aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
. ++.+.++--. . .++ +.++.+.+.|.+| .+=-|+.-|.+|+...++.+.+-+ -..|.+.
T Consensus 131 ~-vd~lkIgA~~--------~--~n~----~LLr~va~~gkPV--ilK~Gms~t~~ei~~ave~i~~~G--n~~iiL~-- 189 (298)
T 3fs2_A 131 V-VDVLQIPAFL--------C--RQT----DLLIAAARTGRVV--NVKKGQFLAPWDMKNVLAKITESG--NPNVLAT-- 189 (298)
T ss_dssp T-CSEEEECGGG--------T--TCH----HHHHHHHHTTSEE--EEECCTTCCGGGHHHHHHHHHTTT--CCCEEEE--
T ss_pred h-CCEEEECccc--------c--CCH----HHHHHHHccCCcE--EEeCCCCCCHHHHHHHHHHHHHcC--CCeEEEE--
Confidence 8 9998888311 0 011 1344444555554 223333358888999999998876 3334332
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-c--------------ccccccchhhHHHHhhcCccEEeeCCc
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-S--------------AGRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i-~--------------~~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
.-|+.+ ..+. ..-.++.+...|. + ...+-. + ++.-.+-..+...|+..||++++++..
T Consensus 190 --erg~~y-~~~~--~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H 262 (298)
T 3fs2_A 190 --ERGVSF-GYNT--LVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETH 262 (298)
T ss_dssp --ECCEEC-SSSC--EECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEE
T ss_pred --ECCCCC-CCCC--CccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEec
Confidence 123311 0110 0011333444554 3 222222 1 121111245677889999999999976
Q ss_pred ccc----CCCC---CChhhHHHHHHc
Q psy8199 929 LLT----TDNT---KTNDDSKLLKKL 947 (965)
Q Consensus 929 ~~t----~~~~---~~~~~~~~~~~~ 947 (965)
+.- +++. ++++..+|++++
T Consensus 263 ~tpd~al~D~~~sl~p~el~~lv~~i 288 (298)
T 3fs2_A 263 EDPDNAPSDGPNMVPIDKMPALLEKL 288 (298)
T ss_dssp SSGGGCSSSGGGCEEGGGHHHHHHHH
T ss_pred CChhccCCchhhcCCHHHHHHHHHHH
Confidence 531 1221 455666665543
No 404
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=70.16 E-value=64 Score=33.52 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-ccHHHHHHHHHHHHh-cCcEeEEe------cCCCCH-HHHHHHH---
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLT------LGMLNE-NQAYRLK--- 782 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-~~~~~~~~~~~~i~~-~~~~i~~~------~~~~~~-e~l~~Lk--- 782 (965)
++.+++.+.+..+.+.|++.++...|..+... ....+-.++++.|++ .+..+... +...+. ..++.|+
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~Kv 173 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKV 173 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence 45788999999899999999999988754221 233445666666665 34444332 233333 3455555
Q ss_pred HhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-C-CCHHHHHHH
Q psy8199 783 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-S-ESRDQRAEL 844 (965)
Q Consensus 783 ~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~-et~ed~~~~ 844 (965)
+||.+.+.--+ -.+.+.+.+.++.+++.|+.+ -++.|+ + .+...+...
T Consensus 174 dAGAdf~iTQ~------------ffD~~~~~~f~~~~r~~Gi~v--PIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 174 DAGANRAITQF------------FFDVESYLRFRDRCVSAGIDV--EIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHTCCEEEECC------------CSCHHHHHHHHHHHHHTTCCS--CEECEECCCSCHHHHHHH
T ss_pred HcCCCEEEeCc------------cCCHHHHHHHHHHHHhcCCCC--cEEEEecccCCHHHHHHH
Confidence 58987643221 235667777888889999854 577777 4 555554443
No 405
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=69.01 E-value=58 Score=30.97 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=88.0
Q ss_pred CCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC-----CHHHHHHHHHhCCCeEeccCCCCHHHHhcccC
Q psy8199 731 GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML-----NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS 805 (965)
Q Consensus 731 g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~-----~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~ 805 (965)
.++.+++.+|. . ..+.++++.+|+.+..+.++.+.+ +++.++.|+..+.+.+.-.
T Consensus 31 ~~~~ifll~g~--I-----~~L~~iv~~ik~~gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGIIsT------------- 90 (188)
T 1vkf_A 31 EPDVVFLLKSD--I-----LNLKFHLKILKDRGKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITI------------- 90 (188)
T ss_dssp CSSEEEECCEE--T-----TTHHHHHHHHHHTTCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEES-------------
T ss_pred CCCEEEEEeCc--H-----HHHHHHHHHHHHCCCeEEEecCcccccCCCHHHHHHHHhcCCCEEEcC-------------
Confidence 35667777763 2 126667777777788877755333 7888888866677654222
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHH
Q psy8199 806 TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 885 (965)
Q Consensus 806 ~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ 885 (965)
....++.+++.|+.+-..+.+ + ....+...++.+...+ |+.+-+. || +-..++.+.
T Consensus 91 ------k~~~i~~Akk~GL~tIqR~Fl-i--Ds~al~~~~~~I~~~k--PD~iEiL-----Pg--------~v~p~~I~~ 146 (188)
T 1vkf_A 91 ------KPKNYVVAKKNGIPAVLRFFA-L--DSKAVERGIEQIETLG--VDVVEVL-----PG--------AVAPKVARK 146 (188)
T ss_dssp ------CHHHHHHHHHTTCCEEEEEEC-C--SHHHHHHHHHHHHHHT--CSEEEEE-----SG--------GGHHHHHTT
T ss_pred ------cHHHHHHHHHcCCEEeeEEEE-E--EeHHHhhhhhhccccC--CCeEeec-----CC--------CchHHHHHH
Confidence 267889999999965432222 1 2255677778888888 8887655 22 101233333
Q ss_pred HHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCc
Q psy8199 886 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 886 ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
+ . +. .-+.++......+. .. +.+||+.+++++.
T Consensus 147 v------~-~~-PiIaGGlI~t~edv-~~-l~aGA~aIsTs~~ 179 (188)
T 1vkf_A 147 I------P-GR-TVIAAGLVETEEEA-RE-ILKHVSAISTSSR 179 (188)
T ss_dssp S------T-TS-EEEEESCCCSHHHH-HH-HTTTSSEEEECCH
T ss_pred h------c-CC-CEEEECCcCCHHHH-HH-HHCCCeEEEeCCH
Confidence 3 2 33 33555554443344 44 9999999988763
No 406
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=68.44 E-value=95 Score=32.57 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCeEeccC--CC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEE-ecC---CC--------HH
Q psy8199 776 NQAYRLKKVGLDYYNHNL--DT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII-GLS---ES--------RD 839 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~~--es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~-Gl~---et--------~e 839 (965)
-..+.+++.|.|.+.+-+ .+ .+++-.+ ..++..+..+.+++.|+++-.-+|. +-+ +. ++
T Consensus 114 ~sve~a~~~GADAVk~lv~~g~d~~~e~~~~-----q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~ 188 (332)
T 3iv3_A 114 WSIKRLKEAGADAVKFLLYYDVDGDPQVNVQ-----KQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVH 188 (332)
T ss_dssp CCHHHHHHTTCSEEEEEEEECTTSCHHHHHH-----HHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHH
T ss_pred cCHHHHHHcCCCEEEEEEEcCCCchHHHHHH-----HHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHH
Confidence 348889999998875443 22 1211111 1346677778899999998776555 542 32 33
Q ss_pred HHHHHHHHH--HhcCCCCCceeeccccccCCCC-----CCC-CCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchh
Q psy8199 840 QRAELIFQL--ANLNPYPESVPINNLVQIKGTP-----LYG-SSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGET 910 (965)
Q Consensus 840 d~~~~l~~l--~~l~~~~~~i~~~~~~P~~gT~-----l~~-~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~ 910 (965)
-+...++.+ .+++ ++.+-+. +||++ +.. +...+.++..+.++..=...|---+-++++.. ..+.+
T Consensus 189 ~V~~a~R~~~~~elG--aDv~Kve----~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~~~~~fl~ 262 (332)
T 3iv3_A 189 KVNDAMKVFSAERFG--IDVLKVE----VPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELFQE 262 (332)
T ss_dssp HHHHHHHHHTSGGGC--CSEEEEC----CSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHhhcCcC--CcEEEEe----cCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHH
Confidence 367777777 5678 8988754 55554 211 22335555544333222223322144566653 23445
Q ss_pred hHHHHhhcCc--cEEeeCCc
Q psy8199 911 TQAFCFLAGA--NSIFYGDK 928 (965)
Q Consensus 911 ~~~~~l~~Ga--n~~~~g~~ 928 (965)
.-..|+.+|| +++..|-+
T Consensus 263 ~v~~A~~aGa~f~Gv~~GRn 282 (332)
T 3iv3_A 263 TLVFAHKAGAKFNGVLCGRA 282 (332)
T ss_dssp HHHHHHHHTCCCCEEEECHH
T ss_pred HHHHHHHcCCCcceEEeeHH
Confidence 5567899999 99999954
No 407
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=68.04 E-value=1.5e+02 Score=32.63 Aligned_cols=114 Identities=14% Similarity=-0.002 Sum_probs=62.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCceeeccccccC-CC-CCCCC-CCCC----HHHHHHHHHHHHHHCCCCceeccccccc
Q psy8199 834 LSESRDQRAELIFQLANLNPYPESVPINNLVQIK-GT-PLYGS-SILD----PLEFIRTIAVARITMPTSRIRMSAGRKE 906 (965)
Q Consensus 834 l~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~-gT-~l~~~-~~~~----~~~~~~~ia~~R~~lp~~~i~i~~~~~~ 906 (965)
.+.+.+++.+.++.+.+.+ .+.|.+..-+... +. .+... ...+ ....+++++..+...+....-+..+-..
T Consensus 306 pd~~~ed~~~iA~~~~~aG--aDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~ 383 (443)
T 1tv5_A 306 PDLNQEQKKEIADVLLETN--IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIF 383 (443)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHHcC--CCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 3567889999999999999 8888776432210 00 00000 0011 1224566777777775222333333333
Q ss_pred cchhhHHHHhhcCccEEeeCCccccC-CCC---CChhhHHHHHHcCCC
Q psy8199 907 MGETTQAFCFLAGANSIFYGDKLLTT-DNT---KTNDDSKLLKKLGIN 950 (965)
Q Consensus 907 ~~~~~~~~~l~~Gan~~~~g~~~~t~-~~~---~~~~~~~~~~~~g~~ 950 (965)
...+ ...++.+||+.+++|..++.. +.. -.++....+++.|+.
T Consensus 384 s~~D-A~e~l~aGAd~Vqigrall~~gP~l~~~i~~~l~~~l~~~G~~ 430 (443)
T 1tv5_A 384 SGLD-ALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYY 430 (443)
T ss_dssp SHHH-HHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCS
T ss_pred CHHH-HHHHHHcCCCEEEEcHHHHhcChHHHHHHHHHHHHHHHHhCCC
Confidence 3333 445688999999998765542 110 012334556677764
No 408
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=67.86 E-value=40 Score=34.48 Aligned_cols=136 Identities=19% Similarity=0.141 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc---ccHHHHHHHHHHHHh----cCcEeEEecCCCCHHH-H----HHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEVKK----IGLETCLTLGMLNENQ-A----YRLK 782 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~---~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~-l----~~Lk 782 (965)
.+.+..+.+++.+.+.|++++-++-....+.. .+++.+.+.++.+++ ..+++.+..+.++.+. + +.-.
T Consensus 97 ~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~ 176 (297)
T 4eiv_A 97 GTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAAL 176 (297)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHH
Confidence 56788899999999999999998754322223 457778887777775 2366777888886444 3 3445
Q ss_pred HhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc-------------------CCceeeeEEEecCCCHHHHHH
Q psy8199 783 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-------------------GINICCGGIIGLSESRDQRAE 843 (965)
Q Consensus 783 ~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~-------------------Gi~v~~~~i~Gl~et~ed~~~ 843 (965)
++|.|.|--+- .. ...+-+.++..-..+.+++. |-++..-.-.|=--|.++..+
T Consensus 177 ~AGADFVKTST----Gf---~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~ 249 (297)
T 4eiv_A 177 EGGADFLQTSS----GL---GATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADF 249 (297)
T ss_dssp HHTCSEEECCC----SS---SSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHH
T ss_pred HhCCCEEEcCC----CC---CCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHH
Confidence 68998874321 10 11233444444333334321 222211111121278999999
Q ss_pred HHHHHHhcCCCCCcee
Q psy8199 844 LIFQLANLNPYPESVP 859 (965)
Q Consensus 844 ~l~~l~~l~~~~~~i~ 859 (965)
.++.+.+++ .+++.
T Consensus 250 ~i~~~~elG--~~wl~ 263 (297)
T 4eiv_A 250 LMQMIFENG--PRSIV 263 (297)
T ss_dssp HHHHHHHHC--GGGCS
T ss_pred HHHHHHHhC--ccccC
Confidence 999999988 66553
No 409
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=67.21 E-value=60 Score=34.66 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCc------ccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~------~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
+.++...+.|+..+.+......... .-..++.++++.+++.+..+.. ..|. ...++.|.+.|++.+++.-.
T Consensus 197 ~~~~~~~~aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~--~~~l~~l~~~g~d~~~~d~~ 274 (359)
T 2inf_A 197 VYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGA--SHLAGDWHDLPLDVVGLDWR 274 (359)
T ss_dssp HHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTC--GGGHHHHHTSSCSEEECCTT
T ss_pred HHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCc--HHHHHHHHHhCCCEEEeCCC
Confidence 3444555789998887654322111 1134455556666655544433 3343 66899999999998877533
Q ss_pred CCHHHHhc
Q psy8199 795 TSPKLYGD 802 (965)
Q Consensus 795 s~~~~~~~ 802 (965)
.+.+..++
T Consensus 275 ~d~~~~~~ 282 (359)
T 2inf_A 275 LGIDEARS 282 (359)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 34333333
No 410
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=67.11 E-value=72 Score=32.67 Aligned_cols=186 Identities=10% Similarity=0.057 Sum_probs=95.3
Q ss_pred CHHHHHHHHHHHHHCC----CCEEEEeeccC-C------CCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHH
Q psy8199 716 SIESVITAAQKAKSDG----ATRFCMGAAWR-E------LKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g----~~~i~l~~g~~-~------~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
+++..++.++.+++.| +..++-..... + .....++.-++.+++++ +.|+.+.+++ .+.+.++.+.+
T Consensus 27 ~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~ 104 (280)
T 2qkf_A 27 SLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDV--HEPHQCQPVAE 104 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEEEEC--CSGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEEEec--CCHHHHHHHHh
Confidence 5677777777766643 33222211111 0 11112445555566664 4788887754 46777888888
Q ss_pred hCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 784 VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 784 aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
. ++.+.++--. . .+ .+.++.+.+.|.+| .+=-|..-|.+++...++.++..+ -..+.+.
T Consensus 105 ~-~d~~kIga~~--------~--~n----~~ll~~~a~~~kPV--~lk~G~~~t~~e~~~A~~~i~~~G--n~~i~L~-- 163 (280)
T 2qkf_A 105 V-CDVIQLPAFL--------A--RQ----TDLVVAMAKTGNVV--NIKKPQFLSPSQMKNIVEKFHEAG--NGKLILC-- 163 (280)
T ss_dssp H-CSEEEECGGG--------T--TB----HHHHHHHHHTCCEE--EEECCTTSCGGGHHHHHHHHHHTT--CCCEEEE--
T ss_pred h-CCEEEECccc--------c--cC----HHHHHHHHcCCCcE--EEECCCCCCHHHHHHHHHHHHHcC--CCeEEEE--
Confidence 8 8888887311 0 01 12444444555544 233333347888999999988877 3333322
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc----------ccc-----hhhHHHHhhcCccEEeeCCc
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK----------EMG-----ETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~----------~~~-----~~~~~~~l~~Gan~~~~g~~ 928 (965)
.-|+-. ..+. ..-.++.+...|..++...+-+.+.-. ..+ ..+...++..||+++|++.+
T Consensus 164 --~rg~~~-~~~~--~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H 238 (280)
T 2qkf_A 164 --ERGSSF-GYDN--LVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESH 238 (280)
T ss_dssp --ECCEEC-STTC--EECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC-
T ss_pred --ECCCCC-CCCc--cccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeec
Confidence 223311 1111 001122333455555333344421111 023 45566778899999999987
Q ss_pred c
Q psy8199 929 L 929 (965)
Q Consensus 929 ~ 929 (965)
+
T Consensus 239 ~ 239 (280)
T 2qkf_A 239 P 239 (280)
T ss_dssp -
T ss_pred C
Confidence 5
No 411
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=66.62 E-value=89 Score=32.18 Aligned_cols=204 Identities=9% Similarity=0.067 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHCC----CCEEEEeeccC-C------CCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHH
Q psy8199 716 SIESVITAAQKAKSDG----ATRFCMGAAWR-E------LKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g----~~~i~l~~g~~-~------~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
+++..++.++.+++.| ...++-..... + +....++.-++.+++++ +.|+.+.+++ .+.+.++.+.+
T Consensus 30 ~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp~~te~--~d~~~~~~l~~ 107 (292)
T 1o60_A 30 SRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVKIITDV--HEIYQCQPVAD 107 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEEC--CSGGGHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCcEEEec--CCHHHHHHHHh
Confidence 5677777777766643 33333322211 1 01112444455555554 5788887764 46777888877
Q ss_pred hCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 784 VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 784 aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.++.+.|+--. .+ + .+.++.+.+.|.+| .+=-|..-|.+++...++.++..+ -..+.+.
T Consensus 108 -~vd~~kIgA~~--------~~--n----~~Ll~~~a~~~kPV--~lk~G~~~t~~ei~~Av~~i~~~G--n~~i~L~-- 166 (292)
T 1o60_A 108 -VVDIIQLPAFL--------AR--Q----TDLVEAMAKTGAVI--NVKKPQFLSPSQMGNIVEKIEECG--NDKIILC-- 166 (292)
T ss_dssp -TCSEEEECGGG--------TT--C----HHHHHHHHHTTCEE--EEECCTTSCGGGHHHHHHHHHHTT--CCCEEEE--
T ss_pred -cCCEEEECccc--------cc--C----HHHHHHHHcCCCcE--EEeCCCCCCHHHHHHHHHHHHHcC--CCeEEEE--
Confidence 68888887311 10 1 12444444555554 233333347889999999998877 3333322
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc----------ccc-----hhhHHHHhhcCccEEeeCCc
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK----------EMG-----ETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~----------~~~-----~~~~~~~l~~Gan~~~~g~~ 928 (965)
.-|+-. ..+. ..-.++.+...|..++...+-+.+.-. ..+ ..+...++..||+++|++..
T Consensus 167 --~rg~~~-~y~~--~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H 241 (292)
T 1o60_A 167 --DRGTNF-GYDN--LIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAH 241 (292)
T ss_dssp --ECCEEC-STTC--EECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred --ECCCCC-CCCc--cccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEec
Confidence 123211 1111 001122333455555333343411111 012 35666778899999999977
Q ss_pred cc----cCCCC---CChhhHHHHHHc
Q psy8199 929 LL----TTDNT---KTNDDSKLLKKL 947 (965)
Q Consensus 929 ~~----t~~~~---~~~~~~~~~~~~ 947 (965)
+. -.+|. ++++..+|+++.
T Consensus 242 ~~~d~al~Dg~~sl~p~~l~~lv~~i 267 (292)
T 1o60_A 242 PNPNQAKCDGPSALPLSALEGFVSQM 267 (292)
T ss_dssp SSGGGCSSCCTTCEEGGGHHHHHHHH
T ss_pred CCcccCCchhhcCCCHHHHHHHHHHH
Confidence 52 02332 456666665543
No 412
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=66.58 E-value=63 Score=33.00 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=87.3
Q ss_pred HHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH-cCCceeee
Q psy8199 755 MICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCG 829 (965)
Q Consensus 755 ~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~~~ 829 (965)
.++++++.+ ..-++..|.-..+.+.++|++.+.++=.+ .- ..-.+ ..+.++.+..++.+.+ ..+++...
T Consensus 9 ~lr~l~~~~---i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~---~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD 82 (275)
T 2ze3_A 9 SFHALHQTG---FLLPNAWDVASARLLEAAGFTAIGTTSAGIAH---ARGRTDGQTLTRDEMGREVEAIVRAVAIPVNAD 82 (275)
T ss_dssp HHHHHHHHC---EEECEESSHHHHHHHHHHTCSCEEECHHHHHH---HSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHhhCC---eeEecccCHHHHHHHHHcCCCEEEECcHHHHH---hCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEee
Confidence 344444433 34466668888889999999999887222 21 11122 2488999888888665 56789899
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 830 ~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
+=.|+|.+.++..+++..+.+.+ ..-|.+- .++.-......+.+++...|..++..
T Consensus 83 ~d~Gyg~~~~~~~~~v~~l~~aG--aagv~iE-----D~~~~~~k~l~~~~e~~~~I~aa~~a 138 (275)
T 2ze3_A 83 IEAGYGHAPEDVRRTVEHFAALG--VAGVNLE-----DATGLTPTELYDLDSQLRRIEAARAA 138 (275)
T ss_dssp CTTCSSSSHHHHHHHHHHHHHTT--CSEEEEE-----CBCSSSSSCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcC--CcEEEEC-----CCcCCCCCccCCHHHHHHHHHHHHHh
Confidence 99998889999999999999988 5655543 12111234557888998888888887
No 413
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=66.49 E-value=92 Score=34.49 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEe----cCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLT----LGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~----~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+++.+++.++++.+.|++.|+|.+... ...+..+.++++.+++ .++.+.++ .|.-....+.. .++|++.+.
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~DT~G---~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~laA-v~AGa~~VD 231 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKDMAG---ILTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMTLLKA-IEAGVDRVD 231 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTS---CCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHH-HHTTCSEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHH-HHhCCCEEE
Confidence 589999999999999999999976432 2346777788888875 44455442 34444444444 468999997
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
..+.. +.+-.++-+.+..+.+++. .|+.+ |-..+.+.+.-+++.++
T Consensus 232 ~ti~g----~gertGN~~lE~lv~~L~~---~g~~t--------gidl~~L~~is~~v~~~ 277 (464)
T 2nx9_A 232 TAISS----MSGTYGHPATESLVATLQG---TGYDT--------GLDIAKLEQIAAYFRDV 277 (464)
T ss_dssp EBCGG----GCSTTSCCBHHHHHHHHTT---STTCC--------CCCHHHHHHHHHHHHHH
T ss_pred Eeccc----cCCCCcCHHHHHHHHHHHh---cCCCc--------ccCHHHHHHHHHHHHHH
Confidence 77743 2233445566777666654 45542 23455555555555554
No 414
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=66.47 E-value=1.3e+02 Score=31.57 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
.+.+..++++.++.+.|+.-+.+.-. . +.-.+.++.|++ ..+++....- .+...+..-.++|++.+.++-
T Consensus 43 ~D~~atv~Qi~~l~~aG~diVRvavp-----~---~~~a~al~~I~~~~~vPlvaDiH-f~~~lal~a~e~G~dklRINP 113 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCEIVRVAVP-----H---KEDVEALEEIVKKSPMPVIADIH-FAPSYAFLSMEKGVHGIRINP 113 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEEEECC-----S---HHHHHHHHHHHHHCSSCEEEECC-SCHHHHHHHHHTTCSEEEECH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCC-----C---hHHHHHHHHHHhcCCCCEEEeCC-CCHHHHHHHHHhCCCeEEECC
Confidence 78999999999999999999988433 2 223567777775 5556554432 467777777889999876663
Q ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe---------cC-CCHHHHH----HHHHHHHhcCCCCCcee
Q psy8199 794 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---------LS-ESRDQRA----ELIFQLANLNPYPESVP 859 (965)
Q Consensus 794 es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G---------l~-et~ed~~----~~l~~l~~l~~~~~~i~ 859 (965)
..+. +.+++.+.++.+++.|+++..++=.| ++ .|.|.+. ++++.+++++ .+.+.
T Consensus 114 ----GNig------~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~g--f~~iv 181 (366)
T 3noy_A 114 ----GNIG------KEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWG--FTNYK 181 (366)
T ss_dssp ----HHHS------CHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--CCCEE
T ss_pred ----cccC------chhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCC--CCeEE
Confidence 4442 24567788999999999988877666 22 5655444 4566777777 45554
Q ss_pred eccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccc
Q psy8199 860 INNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904 (965)
Q Consensus 860 ~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~ 904 (965)
++ .+. .+..+.++.+..+.... +..+++.-..
T Consensus 182 iS----~K~--------S~v~~~i~ayr~la~~~-dyPLHlGvTE 213 (366)
T 3noy_A 182 VS----IKG--------SDVLQNVRANLIFAERT-DVPLHIGITE 213 (366)
T ss_dssp EE----EEC--------SSHHHHHHHHHHHHHHC-CCCEEECCSS
T ss_pred Ee----eec--------CChHHHHHHHHHHHhcc-CCCEEEccCC
Confidence 33 121 23444444444443334 3446666544
No 415
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=66.31 E-value=27 Score=36.61 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc-------cHHHHHHHHHHHHhc-C--cEeEEec------CCCCH-HH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDR-------DLDNIENMICEVKKI-G--LETCLTL------GMLNE-NQ 777 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~-------~~~~~~~~~~~i~~~-~--~~i~~~~------~~~~~-e~ 777 (965)
++.+++.+.+..+.+.|++.++...|..+-... ++++-.++++.|++. + ..+.... ...+. ..
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 467899999999999999999999887542201 144556666666653 3 3443322 22232 24
Q ss_pred HHHHH---HhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 778 AYRLK---KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 778 l~~Lk---~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
++.|+ +||.+.+.--+ -.+.+.+.+.++.+++.|+. .-++.|+
T Consensus 163 ~~~Lk~Kv~aGAdf~iTQ~------------ffD~~~~~~f~~~~r~~Gi~--vPIi~GI 208 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAITQL------------FFNNAHYFGFLERARRAGIG--IPILPGI 208 (310)
T ss_dssp HHHHHHHHHHHCSEEEECC------------CSCHHHHHHHHHHHHHTTCC--SCEECEE
T ss_pred HHHHHHHHHcCCCEEEecc------------cCCHHHHHHHHHHHHHcCCC--CeEEEEe
Confidence 44443 58887542221 23566777788888889975 3466666
No 416
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=65.70 E-value=4.2 Score=41.11 Aligned_cols=201 Identities=9% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~ 798 (965)
+.++.++.+.+.|++.+.+..-... ........+.++.+++.++.+....+..+.+.++.+.++|++.+.++-
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~--~~~~~~~~~~i~~i~~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~----- 103 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNA--IENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSS----- 103 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHH--HHCCCTTHHHHHHGGGGGGGEEEESSCCSHHHHHHHHHTTCCEEEECH-----
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc--ccCCchhHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHCCCCEEEECc-----
Q ss_pred HHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHH---HHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC
Q psy8199 799 LYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRD---QRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 875 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~e---d~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~ 875 (965)
..+..+....+. +.+....-.|+.+..+.+.-.|+... +..+.++.+.+++ ...+.++ .-+.-....
T Consensus 104 --~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~t-----~~~~~g~~~ 173 (241)
T 1qo2_A 104 --KVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYG--LEEIVHT-----EIEKDGTLQ 173 (241)
T ss_dssp --HHHHCTTHHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTT--CCEEEEE-----ETTHHHHTC
T ss_pred --hHhhChHHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCC--CCEEEEE-----eecccccCC
Q ss_pred CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc-----C-ccEEeeCCccccCCCCCChhhHHHH
Q psy8199 876 ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-----G-ANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 876 ~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~-----G-an~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
.++.+.+.++.... +..+-...+-.. .+--..++.. | |+++++|..++...- +.++....+
T Consensus 174 g~~~~~i~~l~~~~-----~iPvia~GGI~~--~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~-~~~~~~~~~ 240 (241)
T 1qo2_A 174 EHDFSLTKKIAIEA-----EVKVLAAGGISS--ENSLKTAQKVHTETNGLLKGVIVGRAFLEGIL-TVEVMKRYA 240 (241)
T ss_dssp CCCHHHHHHHHHHH-----TCEEEEESSCCS--HHHHHHHHHHHHHTTTSEEEEEECHHHHTTSS-CHHHHHHHH
T ss_pred cCCHHHHHHHHHhc-----CCcEEEECCCCC--HHHHHHHHhcccccCCeEeEEEeeHHHHcCCC-CHHHHHHHh
No 417
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=65.69 E-value=56 Score=34.53 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=68.5
Q ss_pred HHHHHHHCCCCEEEEeeccCCC-Ccc-----cHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC
Q psy8199 723 AAQKAKSDGATRFCMGAAWREL-KDR-----DLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 795 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~-~~~-----~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es 795 (965)
.++...+.|+..+.+....... +.. -..++.++++.+++. +..+.....-. ...++.|.++|++.+++.-..
T Consensus 184 ~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~-~~~l~~l~~~g~d~~~~d~~~ 262 (338)
T 2eja_A 184 YLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGS-SSFIDLAVDYRADALSVDWSV 262 (338)
T ss_dssp HHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSH-HHHHHHHTTSCCSEEECCTTS
T ss_pred HHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCc-HHHHHHHHHcCCCEEEeCCCC
Confidence 3344556799988776643221 111 134455666666654 55544433322 789999999999988776433
Q ss_pred CHHHHhcccC-----C-------CCHHHHHHHHHHHHHc-CCceeeeEEEecC------CCHHHHHHHHHHHHhcC
Q psy8199 796 SPKLYGDIIS-----T-------RDYENRLNTLKNVRNV-GINICCGGIIGLS------ESRDQRAELIFQLANLN 852 (965)
Q Consensus 796 ~~~~~~~i~~-----~-------~~~~~~~~~i~~~~~~-Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~ 852 (965)
+.+..++..+ + .+.++..+.++.+-+. |- ..++|+++| -..|.+...++.+++.+
T Consensus 263 dl~~~~~~~~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~--~~g~I~~~g~gi~~~~p~en~~a~v~~v~~~~ 336 (338)
T 2eja_A 263 DIPELFKIYDKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPV--KTRYVFNLGHGLAPDMELEKVKYLVDLVKSFP 336 (338)
T ss_dssp CHHHHHHHCCSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCC--SSSEEBCBSSCCCTTSCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHhCCeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCC--CCCeEEeCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 5333322111 1 1556666666555443 31 124565543 23355555566555543
No 418
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=65.62 E-value=38 Score=36.26 Aligned_cols=140 Identities=13% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHH-cCCceeeeEEEecCCCHHHHHHHHHHHHhcCC
Q psy8199 775 ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNP 853 (965)
Q Consensus 775 ~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~ 853 (965)
++..+....+|.+.+.+.+...++...- ....+++.|++.++.+++ .++++..-. +|.+-+.++ ++.+.+.+
T Consensus 158 e~~~~~ve~~~adal~ihln~~qe~~~p-~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~s~e~----A~~l~~aG- 230 (365)
T 3sr7_A 158 QAGLQAVRDLQPLFLQVHINLMQELLMP-EGEREFRSWKKHLSDYAKKLQLPFILKE-VGFGMDVKT----IQTAIDLG- 230 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECHHHHHTSS-SSCCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCCCHHH----HHHHHHHT-
T ss_pred HHHHHHHHhcCCCEEEEeccccccccCC-CCCCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCCCHHH----HHHHHHcC-
Confidence 4456666688999988887653333211 123467788888888887 477777664 466677654 55567778
Q ss_pred CCCceeeccccccCCCCCC--------------CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcC
Q psy8199 854 YPESVPINNLVQIKGTPLY--------------GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAG 919 (965)
Q Consensus 854 ~~~~i~~~~~~P~~gT~l~--------------~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~G 919 (965)
++.|.+... .||.+. +... +..+.+.. .+...++..+-..++- ..+.+. ..++.+|
T Consensus 231 -ad~I~V~g~---GGt~~a~ie~~r~~~~~~~~~~g~-pt~~~L~~---v~~~~~~ipvia~GGI-~~g~Dv-~KaLalG 300 (365)
T 3sr7_A 231 -VKTVDISGR---GGTSFAYIENRRGGNRSYLNQWGQ-TTAQVLLN---AQPLMDKVEILASGGI-RHPLDI-IKALVLG 300 (365)
T ss_dssp -CCEEECCCB---C--------------CGGGTTCSC-BHHHHHHH---HGGGTTTSEEEECSSC-CSHHHH-HHHHHHT
T ss_pred -CCEEEEeCC---CCcccchhhccccccccccccccc-cHHHHHHH---HHHhcCCCeEEEeCCC-CCHHHH-HHHHHcC
Confidence 888877532 455431 2222 22333332 2334444444444332 333443 3568899
Q ss_pred ccEEeeCCcccc
Q psy8199 920 ANSIFYGDKLLT 931 (965)
Q Consensus 920 an~~~~g~~~~t 931 (965)
|+.+++|..++.
T Consensus 301 AdaV~ig~~~l~ 312 (365)
T 3sr7_A 301 AKAVGLSRTMLE 312 (365)
T ss_dssp CSEEEESHHHHH
T ss_pred CCEEEECHHHHH
Confidence 999999987663
No 419
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=65.38 E-value=81 Score=33.35 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=80.0
Q ss_pred HHHHHHHHhCCCeEeccCCC-C--HHHHhc---ccC---CCCHHHH----HHHHHHHHHc-CCceeeeEEEe---c-CCC
Q psy8199 776 NQAYRLKKVGLDYYNHNLDT-S--PKLYGD---IIS---TRDYENR----LNTLKNVRNV-GINICCGGIIG---L-SES 837 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~~es-~--~~~~~~---i~~---~~~~~~~----~~~i~~~~~~-Gi~v~~~~i~G---l-~et 837 (965)
+..+.++++|+|.|.+..-- . ...+.- .+. +.+.+.+ ++.++.++++ .+++..-+-.. . |.+
T Consensus 148 ~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~ 227 (338)
T 1z41_A 148 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLD 227 (338)
T ss_dssp HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCC
T ss_pred HHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCC
Confidence 44566778888888765421 0 111100 011 1244444 5555555553 44444332221 1 467
Q ss_pred HHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhh
Q psy8199 838 RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 917 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~ 917 (965)
.++..+.++.+.+.+ .+.+.+..-... .+... .++ ...+..++..|..+ +..+-... ... ..+....++.
T Consensus 228 ~~~~~~~a~~l~~~G--vd~i~v~~~~~~-~~~~~-~~~---~~~~~~~~~ir~~~-~iPVi~~G-gi~-s~~~a~~~l~ 297 (338)
T 1z41_A 228 IADHIGFAKWMKEQG--VDLIDCSSGALV-HADIN-VFP---GYQVSFAEKIREQA-DMATGAVG-MIT-DGSMAEEILQ 297 (338)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEEECCCSS-CCCCC-CCT---TTTHHHHHHHHHHH-CCEEEECS-SCC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEEecCccc-cCCCC-CCc---cchHHHHHHHHHHC-CCCEEEEC-CCC-CHHHHHHHHH
Confidence 889999999999999 888887632211 11000 111 11123333344433 22222222 222 2444556688
Q ss_pred cC-ccEEeeCCccccCCCCCChhhHHHHHHcC
Q psy8199 918 AG-ANSIFYGDKLLTTDNTKTNDDSKLLKKLG 948 (965)
Q Consensus 918 ~G-an~~~~g~~~~t~~~~~~~~~~~~~~~~g 948 (965)
.| |+.+++|-.++.. ++=..++.+.++
T Consensus 298 ~G~aD~V~iGR~~i~n----Pdl~~ki~~~~~ 325 (338)
T 1z41_A 298 NGRADLIFIGRELLRD----PFFARTAAKQLN 325 (338)
T ss_dssp TTSCSEEEECHHHHHC----TTHHHHHHHHTT
T ss_pred cCCceEEeecHHHHhC----chHHHHHHcCCC
Confidence 88 9999999876554 333344444444
No 420
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=65.11 E-value=19 Score=38.44 Aligned_cols=94 Identities=10% Similarity=0.109 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHH--CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCC-HHHH-HHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKS--DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN-ENQA-YRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~--~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~-~e~l-~~Lk~aG~~~i~i 791 (965)
++++..+.++.+.+ .++..|-+.+.+.. .+.+.+.+.++..++.|+.+.++.|... .+.+ +.+...|.+++-+
T Consensus 147 ~~~~a~~~l~~a~~~~~~vvG~dL~g~E~~---~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~rIgH 223 (343)
T 3rys_A 147 SEDSALEVLDQLLAMHAPIAGIGLDSAEVG---NPPSKFERLYQRAAEAGLRRIAHAGEEGPASYITEALDVLHVERIDH 223 (343)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEEESCCTT---CCGGGGHHHHHHHHHTTCEEEEEESSSSCHHHHHHHHHTSCCSEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCcccC---CCHHHHHHHHHHHHHCCCeEEEeeCCCCCHHHHHHHHhcCCcceeee
Confidence 44554444444433 46888888765433 3456677888888889999999887653 3444 4455589999999
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCce
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 826 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 826 (965)
++...++ -+.++.+++.|+.+
T Consensus 224 gv~l~~d--------------~~l~~~l~~~~i~l 244 (343)
T 3rys_A 224 GIRCMED--------------TDVVQRLVAEQVPL 244 (343)
T ss_dssp CGGGGGC--------------HHHHHHHHHHTCCE
T ss_pred eeeecCC--------------hHHHHHHHhcCCCe
Confidence 9755210 24567777777754
No 421
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=64.43 E-value=57 Score=33.21 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCcee-eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCC------------CCHH
Q psy8199 814 NTLKNVRNVGINIC-CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSI------------LDPL 880 (965)
Q Consensus 814 ~~i~~~~~~Gi~v~-~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~------------~~~~ 880 (965)
+.++.+++.|-+.- ..++-| .-+.++..+.++.+.+.+ .+.+-+. +|+.. |+.+-+. .+..
T Consensus 6 ~~f~~~~~~~~~~~i~~i~~g-dp~~~~~~~~~~~l~~~G--aD~ieig--~P~sd-p~~DG~~i~~a~~~al~~G~~~~ 79 (268)
T 1qop_A 6 NLFAQLNDRREGAFVPFVTLG-DPGIEQSLKIIDTLIDAG--ADALELG--VPFSD-PLADGPTIQNANLRAFAAGVTPA 79 (268)
T ss_dssp HHHHHHHHTTCCEEEEEEETT-SSCHHHHHHHHHHHHHTT--CSSEEEE--CCCSC-CTTCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhcCCceEEEEeeCC-CCCHHHHHHHHHHHHHCC--CCEEEEC--CCCCC-ccCCCHHHHHHHHHHHHcCCCHH
Confidence 44556665554433 333322 245678888899999988 8888776 55432 4433211 2345
Q ss_pred HHHHHHHHHHHHCCCCceeccccccccc----hhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCC
Q psy8199 881 EFIRTIAVARITMPTSRIRMSAGRKEMG----ETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949 (965)
Q Consensus 881 ~~~~~ia~~R~~lp~~~i~i~~~~~~~~----~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~ 949 (965)
...+++...|...++..+.+-.+++... ..+-..+..+||++++..+- +. ....+..+.+++.|+
T Consensus 80 ~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~--~~--e~~~~~~~~~~~~g~ 148 (268)
T 1qop_A 80 QCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADV--PV--EESAPFRQAALRHNI 148 (268)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTC--CG--GGCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCC--CH--HHHHHHHHHHHHcCC
Confidence 5667788888774444455555565322 34445678899999888653 21 134566777777775
No 422
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*
Probab=64.36 E-value=14 Score=40.63 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC--------CCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR--------ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~--------~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
-+++++.+.+++..+.|...+-+...+. .....+.+.+.++++..++.++.+.++.. ..+.++...++|+
T Consensus 169 ~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~g~ 246 (423)
T 3feq_A 169 DGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAY--TGRAIARAVRCGV 246 (423)
T ss_dssp CSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEE--EHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHcCC
Confidence 4689999999988888877666553211 11235578888888888888888877665 4566777778999
Q ss_pred CeEeccCCCCHHH
Q psy8199 787 DYYNHNLDTSPKL 799 (965)
Q Consensus 787 ~~i~i~~es~~~~ 799 (965)
+.+.+..-.+++.
T Consensus 247 ~~i~H~~~~~~~~ 259 (423)
T 3feq_A 247 RTIEHGNLVDEAA 259 (423)
T ss_dssp CEEEEEEECCHHH
T ss_pred CEEeccCcCCHHH
Confidence 9888875445443
No 423
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=64.28 E-value=36 Score=37.06 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCcEeEEecCC-CCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHH-HcCC
Q psy8199 748 DLDNIENMICEVKKIGLETCLTLGM-LNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVR-NVGI 824 (965)
Q Consensus 748 ~~~~~~~~~~~i~~~~~~i~~~~~~-~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~-~~Gi 824 (965)
+.+.+.++++++++.+..+....+. ...+..+.+.++|++.+.+.... ..+ ...+..++++ ++.++ ..++
T Consensus 140 d~~~~~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~---~~~~~~~~~~----i~~l~~~~~~ 212 (393)
T 2qr6_A 140 DTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAE---HVNTGGEALN----LKEFIGSLDV 212 (393)
T ss_dssp CHHHHHHHHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSS---CCCC-----C----HHHHHHHCSS
T ss_pred CHHHHHHHHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccc---cCCCcccHHH----HHHHHHhcCC
Confidence 4566777888888766665554433 34566777888999988654321 111 1111113333 23333 3466
Q ss_pred ceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH---CC--CCcee
Q psy8199 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT---MP--TSRIR 899 (965)
Q Consensus 825 ~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~---lp--~~~i~ 899 (965)
++.. |-.-|.++ ++.+.+.+ .+.|.+.. -++.+..+....+++...+.++....+.+ .+ +..+-
T Consensus 213 pvi~----ggi~t~e~----a~~~~~~G--ad~i~vg~-Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvi 281 (393)
T 2qr6_A 213 PVIA----GGVNDYTT----ALHMMRTG--AVGIIVGG-GENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHII 281 (393)
T ss_dssp CEEE----ECCCSHHH----HHHHHTTT--CSEEEESC-CSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CEEE----CCcCCHHH----HHHHHHcC--CCEEEECC-CcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEE
Confidence 5543 55567766 44555778 78877742 11111122222233444444444443333 22 13333
Q ss_pred ccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 900 MSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 900 i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
..++- ..+.+ -..++..||+.+++|..++.+
T Consensus 282 a~GGI-~~~~d-v~kalalGA~~V~iG~~~l~~ 312 (393)
T 2qr6_A 282 ADGSI-ENSGD-VVKAIACGADAVVLGSPLARA 312 (393)
T ss_dssp ECSSC-CSHHH-HHHHHHHTCSEEEECGGGGGS
T ss_pred EECCC-CCHHH-HHHHHHcCCCEEEECHHHHcC
Confidence 33322 22333 345688999999999876533
No 424
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=64.18 E-value=22 Score=37.82 Aligned_cols=90 Identities=12% Similarity=0.010 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC--cccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhC-CCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK--DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~--~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG-~~~i~ 790 (965)
.+.++..+.++.+.+.|+..+.+..+..... ........+.++.+++ .++.+..+.+..+.+..+.+.+.| +|.+.
T Consensus 226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence 4578889999999999999999987632100 0111223455666665 588888888888999999999998 99999
Q ss_pred ccCCC--CHHHHhccc
Q psy8199 791 HNLDT--SPKLYGDII 804 (965)
Q Consensus 791 i~~es--~~~~~~~i~ 804 (965)
++=.. +|+..+++.
T Consensus 306 iGR~~i~nPdl~~ki~ 321 (338)
T 1z41_A 306 IGRELLRDPFFARTAA 321 (338)
T ss_dssp ECHHHHHCTTHHHHHH
T ss_pred ecHHHHhCchHHHHHH
Confidence 88322 555554443
No 425
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=63.61 E-value=83 Score=32.05 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCc-eeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------------CCCC
Q psy8199 812 RLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------------SILD 878 (965)
Q Consensus 812 ~~~~i~~~~~~Gi~-v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------------~~~~ 878 (965)
..+.++.+++.|-+ +..+++.|. -+.+...+.++.+.+-+ .+.|-+. +|+ .-|+.+- ...+
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGd-P~~~~~~~~~~~l~~~G--aD~iElG--iPf-SDP~aDGpvIq~a~~rAL~~G~~ 80 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGD-PNPEQSLAIMQTLIDAG--ADALELG--MPF-SDPLADGPTIQGANLRALAAKTT 80 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTS-SCHHHHHHHHHHHHHTT--CSSEEEE--CCC-CCGGGCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC-CCHHHHHHHHHHHHHcC--CCEEEEC--CCC-CCCCCCCHHHHHHHHHHHHcCCC
Confidence 34556667776653 334444444 46777888888888888 8888887 665 3355542 2245
Q ss_pred HHHHHHHHHHHHHHCCCCceecccccccc---c-hhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCC
Q psy8199 879 PLEFIRTIAVARITMPTSRIRMSAGRKEM---G-ETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950 (965)
Q Consensus 879 ~~~~~~~ia~~R~~lp~~~i~i~~~~~~~---~-~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~ 950 (965)
..++++++...|...++..+-+.++++.+ + ..+...+..+|++++++.+-.. . ..++....+++.|+.
T Consensus 81 ~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~--e--e~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 81 PDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPT--N--ESQPFVAAAEKFGIQ 152 (271)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCG--G--GCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCH--H--HHHHHHHHHHHcCCe
Confidence 56888899999987666667777888743 2 3466678899999988876321 1 234556666777764
No 426
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=63.34 E-value=1.4e+02 Score=30.75 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cC-cEeEEe----cCCCCHHHHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IG-LETCLT----LGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~-~~i~~~----~~~~~~e~l~~Lk~aG~~~ 788 (965)
.+++++.+.++.+.+.|+..+.+.+.. . ...++.+.++++.+++ .. +.+.++ .|.- ......-.++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~Dt~-G--~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla-~an~l~Ai~aG~~~ 227 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLGDTI-G--RGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRA-LDNIRVSLEKGLRV 227 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEETT-S--CCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCH-HHHHHHHHHHTCCE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCC-C--CcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchH-HHHHHHHHHhCCCE
Confidence 578999999999999999999998532 2 3457888899998886 32 344442 3443 34444555789999
Q ss_pred EeccCCC-CHHHHhccc-CCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 789 YNHNLDT-SPKLYGDII-STRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 789 i~i~~es-~~~~~~~i~-~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+...+-. -+--|..-. ++-..++.+..++ +.|+.+ |-..+.+.+..+++.++
T Consensus 228 vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~---~~g~~~--------~id~~~l~~~~~~~~~~ 281 (295)
T 1ydn_A 228 FDASVGGLGGCPFAPGAKGNVDTVAVVEMLH---EMGFET--------GLDLDRLRSAGLFTQAL 281 (295)
T ss_dssp EEEBTTCCSCBTTBTTSCCBCBHHHHHHHHH---HTTCBC--------CCCHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCCCCCCCcCChhHHHHHHHHH---hcCCCC--------CcCHHHHHHHHHHHHHH
Confidence 9988755 222222222 2335666666654 456654 23566777777777664
No 427
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=62.93 E-value=40 Score=34.15 Aligned_cols=139 Identities=14% Similarity=-0.035 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe--
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN-- 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~-- 790 (965)
++.+|+.+.++...+. ++..+.=-.|..- ..+.+....+++.+++.|+-+-=+......-..+.-++.|+..+.
T Consensus 107 ~s~~ei~~~l~~al~~vP~a~GvnNHmGS~~--T~~~~~M~~vm~~L~~~gL~FlDS~Ts~~S~a~~~A~~~gvp~~~rd 184 (261)
T 2qv5_A 107 DPAKVNIDRLHRSMAKITNYTGVMNYLGGRF--LAEQSALEPVMRDIGKRGLLFLDDGSSAQSLSGGIAKAISAPQGFAD 184 (261)
T ss_dssp SCHHHHHHHHHHHHTTCCCCSEEEEEECTTG--GGCHHHHHHHHHHHHHTTCEEEECSCCTTCCHHHHHHHHTCCEEECS
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecccccch--hcCHHHHHHHHHHHHHCCCEEEcCCCCcccHHHHHHHHcCCCeEEee
Confidence 7899999999988776 6776665555432 233445555666677777665433333333445556788987776
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC--CCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~--et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
+.+|.. ...+.|. .+..++++.+++.|.- +.+|+. +|.+-+.+.+..+++-+ +..|+++.++..+
T Consensus 185 vFLD~~-~~~~~I~-----~qL~~a~~~Ar~~G~A----IaIGhp~p~Ti~aL~~~~~~l~~~g--i~LVpvS~ll~~~ 251 (261)
T 2qv5_A 185 VLLDGE-VTEASIL-----RKLDDLERIARRNGQA----IGVASAFDESIAAISKWSREAGGRG--IEIVGVSALVSGQ 251 (261)
T ss_dssp EETTSS-CSHHHHH-----HHHHHHHHHHHHHSEE----EEEEECCHHHHHHHHHHHHHGGGGT--EEECCHHHHC---
T ss_pred eecCCC-CCHHHHH-----HHHHHHHHHHHhcCcE----EEEeCCCHHHHHHHHHHhhhhhhCC--eEEEEHHHHhhcc
Confidence 445431 1111121 2556777888888843 566773 66665555555555555 7778877776543
No 428
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=62.93 E-value=22 Score=36.23 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
++.+.. +.+.+.|+..+++++..........+ .++++.+++ ..+.+....|..+.+.+..++++|++.+.++
T Consensus 157 ~~~e~~---~~~~~~G~~~i~~t~~~~~g~~~g~~--~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 157 LLRDWV---VEVEKRGAGEILLTSIDRDGTKSGYD--TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp EHHHHH---HHHHHTTCSEEEEEETTTTTTCSCCC--HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred hHHHHH---HHHHHcCCCEEEEEeecCCCCcCCCC--HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 344444 44456799999986533211111111 445566665 5788999999999999999999999999888
No 429
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=62.47 E-value=1.5e+02 Score=30.92 Aligned_cols=163 Identities=9% Similarity=0.140 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHhc-CcEeEEecCC---CCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcC
Q psy8199 748 DLDNIENMICEVKKI-GLETCLTLGM---LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG 823 (965)
Q Consensus 748 ~~~~~~~~~~~i~~~-~~~i~~~~~~---~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~G 823 (965)
+.+.+.+.++.+++. ...+.++... -..+.++.+.++|++.+.++....+ +.++.+++.|
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~p~----------------~~~~~l~~~g 124 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNPT----------------KYIRELKENG 124 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSCCH----------------HHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCCcH----------------HHHHHHHHcC
Confidence 467788888888863 3344444322 2368899999999999988764221 2345566778
Q ss_pred CceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc
Q psy8199 824 INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 903 (965)
Q Consensus 824 i~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~ 903 (965)
+++...+ .+.++ +..+.+.+ .+.+.+... ..|..- ......+.++- .+..+ +..+-..++
T Consensus 125 ~~v~~~v-----~s~~~----a~~a~~~G--aD~i~v~g~--~~GG~~---G~~~~~~ll~~---i~~~~-~iPviaaGG 184 (326)
T 3bo9_A 125 TKVIPVV-----ASDSL----ARMVERAG--ADAVIAEGM--ESGGHI---GEVTTFVLVNK---VSRSV-NIPVIAAGG 184 (326)
T ss_dssp CEEEEEE-----SSHHH----HHHHHHTT--CSCEEEECT--TSSEEC---CSSCHHHHHHH---HHHHC-SSCEEEESS
T ss_pred CcEEEEc-----CCHHH----HHHHHHcC--CCEEEEECC--CCCccC---CCccHHHHHHH---HHHHc-CCCEEEECC
Confidence 7765432 34444 34456677 788877632 223211 12233333332 22223 233434443
Q ss_pred ccccchhhHHHHhhcCccEEeeCCccccCCC-CCChhhHHHHHHcC
Q psy8199 904 RKEMGETTQAFCFLAGANSIFYGDKLLTTDN-TKTNDDSKLLKKLG 948 (965)
Q Consensus 904 ~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~-~~~~~~~~~~~~~g 948 (965)
-.. +.+. ..++..||+++.+|..++.+.. ...+...+++.+..
T Consensus 185 I~~-~~dv-~~al~~GA~gV~vGs~~~~~~e~~~~~~~k~~~~~~~ 228 (326)
T 3bo9_A 185 IAD-GRGM-AAAFALGAEAVQMGTRFVASVESDVHPVYKEKIVKAS 228 (326)
T ss_dssp CCS-HHHH-HHHHHHTCSEEEESHHHHTBSSCCSCHHHHHHHHHCC
T ss_pred CCC-HHHH-HHHHHhCCCEEEechHHHcCccccccHHHHHHHHhcc
Confidence 322 2333 3557799999999988775443 34566677775554
No 430
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=62.29 E-value=1.5e+02 Score=30.80 Aligned_cols=177 Identities=12% Similarity=0.069 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh---cCcEeEEecCCC-CHHH---HHHHHHhCCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK---IGLETCLTLGML-NENQ---AYRLKKVGLD 787 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~---~~~~i~~~~~~~-~~e~---l~~Lk~aG~~ 787 (965)
.+.+.+.+.++.+.+.|++.+++.|..-.......++-.++++...+ -.+.+....|.. +.+. .+..+++|+|
T Consensus 42 iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 42 LDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999988774433334556666667666654 235566555533 4444 4455667998
Q ss_pred eEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHH-cCCceeeeEEEec-C--CCHHHHHHHHHHH-HhcCCCCCceeecc
Q psy8199 788 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGL-S--ESRDQRAELIFQL-ANLNPYPESVPINN 862 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl-~--et~ed~~~~l~~l-~~l~~~~~~i~~~~ 862 (965)
.+.+-.-. |. .-+.+...+-.+.+.+ .++++..+-+-+. | -+. +++..| .++ +..+.+-
T Consensus 122 avlv~~P~----y~----~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~----~~~~~L~a~~---pnIvgiK- 185 (315)
T 3na8_A 122 AVMVLPIS----YW----KLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSV----ELILRIVREV---DNVTMVK- 185 (315)
T ss_dssp EEEECCCC----SS----CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCH----HHHHHHHHHS---TTEEEEE-
T ss_pred EEEECCCC----CC----CCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCH----HHHHHHHhcC---CCEEEEE-
Confidence 88775422 11 1245566666655443 5777754444333 3 333 344444 454 3544443
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCC
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 927 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~ 927 (965)
.| ..+...+.+++ +..-++. .+-++... .-..++..|+++.+.+-
T Consensus 186 -----ds------sgd~~~~~~~~---~~~~~~f--~v~~G~D~----~~l~~l~~G~~G~is~~ 230 (315)
T 3na8_A 186 -----ES------TGDIQRMHKLR---LLGEGRV--PFYNGCNP----LALEAFVAGAKGWCSAA 230 (315)
T ss_dssp -----EC------SSCHHHHHHHH---HHTTTCS--CEEECCGG----GHHHHHHHTCSEEEESG
T ss_pred -----CC------CCCHHHHHHHH---HHcCCCE--EEEeCchH----HHHHHHHCCCCEEEech
Confidence 12 11334444333 3322333 23333322 23356789999987664
No 431
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=62.07 E-value=24 Score=35.90 Aligned_cols=200 Identities=10% Similarity=-0.050 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-C
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-S 796 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~ 796 (965)
+.++.++.+.+.|+.++++..-.. ...+. ++++.+ ..+.+.+-.|..+. .++.+. +|++.+.++-.. .
T Consensus 39 dp~~~A~~~~~~Ga~~l~vvDL~~----~n~~~----i~~i~~~~~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~ 108 (260)
T 2agk_A 39 PSSYYAKLYKDRDVQGCHVIKLGP----NNDDA----AREALQESPQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFT 108 (260)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEESS----SCHHH----HHHHHHHSTTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBC
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC----CCHHH----HHHHHhcCCceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHh
Confidence 345556667778998888865532 22333 333433 46666676666665 777777 999999888544 1
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCC----cee---e-e-EEEecCCCH---HHHH-HHHHHHHhcCCCCCceeeccc
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGI----NIC---C-G-GIIGLSESR---DQRA-ELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi----~v~---~-~-~i~Gl~et~---ed~~-~~l~~l~~l~~~~~~i~~~~~ 863 (965)
++ ....++...+.++...+..+ .+. - + .+...|... .+.. +.++.+.++ ...+.++..
T Consensus 109 ~~------g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~---a~~il~t~i 179 (260)
T 2agk_A 109 KE------GHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY---TNEFLIHAA 179 (260)
T ss_dssp TT------CCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT---CSEEEEEC-
T ss_pred hc------CCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh---cCEEEEEee
Confidence 11 11234555555555542222 221 0 1 333334222 1333 444444443 234433311
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CCceeccccccccchhhHHHHhhc--CccEEeeCCcc--ccCCCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMP---TSRIRMSAGRKEMGETTQAFCFLA--GANSIFYGDKL--LTTDNTK 936 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp---~~~i~i~~~~~~~~~~~~~~~l~~--Gan~~~~g~~~--~t~~~~~ 936 (965)
. ..||- ..++. +.++.++ ...| +..+-.+++-.. ..++... +.. ||+++++|.-+ ......+
T Consensus 180 ~-~dG~~----~G~d~-eli~~l~---~~~~~~~~iPVIasGGi~s-~ed~~~l-~~~~~G~~gvivg~al~l~~g~~~~ 248 (260)
T 2agk_A 180 D-VEGLC----GGIDE-LLVSKLF---EWTKDYDDLKIVYAGGAKS-VDDLKLV-DELSHGKVDLTFGSSLDIFGGNLVK 248 (260)
T ss_dssp -----------CCCCH-HHHHHHH---HHHTTCSSCEEEEESCCCC-THHHHHH-HHHHTTCEEEECCTTBGGGTCSSBC
T ss_pred c-cccCc----CCCCH-HHHHHHH---HhhcccCCceEEEeCCCCC-HHHHHHH-HHhcCCCCEEEeeCCHHHcCCCCCC
Confidence 1 12331 22233 3333322 2332 333333333323 2444443 555 99999999974 3443256
Q ss_pred ChhhHHHHHHcC
Q psy8199 937 TNDDSKLLKKLG 948 (965)
Q Consensus 937 ~~~~~~~~~~~g 948 (965)
..+..+.+++.|
T Consensus 249 ~~~~~~~~~~~~ 260 (260)
T 2agk_A 249 FEDCCRWNEKQG 260 (260)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 778777776644
No 432
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=62.03 E-value=28 Score=36.67 Aligned_cols=137 Identities=11% Similarity=0.086 Sum_probs=70.7
Q ss_pred HHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH-cCCceeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 778 AYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
.+.++++ +|.|.++.-+ .+...+.-.+ ....+...+.++.+++ .++++..-+=.|.. .++..+.++.+.+.+
T Consensus 77 a~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~--~~~~~~~a~~l~~~G 153 (318)
T 1vhn_A 77 ARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWE--KNEVEEIYRILVEEG 153 (318)
T ss_dssp HHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSS--SCCHHHHHHHHHHTT
T ss_pred HHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCC--hHHHHHHHHHHHHhC
Confidence 3444455 6776666655 3333221111 1246677777777776 47776655555552 223347788888998
Q ss_pred CCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhh-cCccEEeeCCcccc
Q psy8199 853 PYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL-AGANSIFYGDKLLT 931 (965)
Q Consensus 853 ~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~-~Gan~~~~g~~~~t 931 (965)
.+.+.+. .+|...........+.++.+ + .+..+-..++ ... .+-...++. .||+.+++|-.++.
T Consensus 154 --~d~i~v~-----g~~~~~~~~~~~~~~~i~~i---~---~~ipVi~~Gg-I~s-~~da~~~l~~~gad~V~iGR~~l~ 218 (318)
T 1vhn_A 154 --VDEVFIH-----TRTVVQSFTGRAEWKALSVL---E---KRIPTFVSGD-IFT-PEDAKRALEESGCDGLLVARGAIG 218 (318)
T ss_dssp --CCEEEEE-----SSCTTTTTSSCCCGGGGGGS---C---CSSCEEEESS-CCS-HHHHHHHHHHHCCSEEEESGGGTT
T ss_pred --CCEEEEc-----CCCccccCCCCcCHHHHHHH---H---cCCeEEEECC-cCC-HHHHHHHHHcCCCCEEEECHHHHh
Confidence 8888775 34432221111111222111 1 1222322222 122 233345566 79999999987654
Q ss_pred C
Q psy8199 932 T 932 (965)
Q Consensus 932 ~ 932 (965)
.
T Consensus 219 ~ 219 (318)
T 1vhn_A 219 R 219 (318)
T ss_dssp C
T ss_pred C
Confidence 4
No 433
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=61.82 E-value=1.3e+02 Score=29.72 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=91.7
Q ss_pred HHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEecc--CCC-CHHHHhc
Q psy8199 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN--LDT-SPKLYGD 802 (965)
Q Consensus 726 ~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~--~es-~~~~~~~ 802 (965)
.+.+.|..-|.+.+. .. ...+.+.++++++|+..+.+.+-++.. +.+ -.|+|.+.+- +.+ +++.+
T Consensus 26 ~~~~~GtD~i~vGGs-~g---vt~~~~~~~v~~ik~~~~Pvvlfp~~~--~~v----~~gaD~~l~pslln~~~~~~i-- 93 (228)
T 3vzx_A 26 ILCESGTDAVIIGGS-DG---VTEDNVLRMMSKVRRFLVPCVLEVSAI--EAI----VPGFDLYFIPSVLNSKNADWI-- 93 (228)
T ss_dssp HHHTSSCSEEEECCC-SC---CCHHHHHHHHHHHTTSSSCEEEECSCG--GGC----CSCCSEEEEEEETTBSSGGGT--
T ss_pred HHHHcCCCEEEECCc-CC---CCHHHHHHHHHHhhccCCCEEEeCCCH--HHc----cccCCEEEEeeecCCCCcchh--
Confidence 345778887777443 33 336889999999998777777755553 111 1588877665 222 33221
Q ss_pred ccCCCCHHHHHHHHHHHHHcCC-----ce--eeeEEEecCCCH------------HHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 803 IISTRDYENRLNTLKNVRNVGI-----NI--CCGGIIGLSESR------------DQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 803 i~~~~~~~~~~~~i~~~~~~Gi-----~v--~~~~i~Gl~et~------------ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.....++ +++.|+ .+ ..+++++.+.+. +++.......+.++ ...|.+-
T Consensus 94 ------~g~~~~a---~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g--~~~VYld-- 160 (228)
T 3vzx_A 94 ------VGMHQKA---MKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQ--LPIFYLE-- 160 (228)
T ss_dssp ------THHHHHH---HHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTT--CSEEEEE--
T ss_pred ------hhHHHHH---HHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcC--CCEEEec--
Confidence 1111233 455664 33 345666665554 67766666666566 4555333
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
..|++- + .+++...|...++..+-+..+-.. .+....++ .||+.+++|.-+.
T Consensus 161 --~sG~~~------~----~~~i~~i~~~~~~~Pv~vGGGI~t--~e~a~~~~-~gAD~VVVGSa~v 212 (228)
T 3vzx_A 161 --YSGVLG------D----IEAVKKTKAVLETSTLFYGGGIKD--AETAKQYA-EHADVIVVGNAVY 212 (228)
T ss_dssp --CTTSCC------C----HHHHHHHHHHCSSSEEEEESSCCS--HHHHHHHH-TTCSEEEECTHHH
T ss_pred --CCCCcC------C----HHHHHHHHHhcCCCCEEEeCCCCC--HHHHHHHH-hCCCEEEEChHHh
Confidence 245421 1 444455566554333434433322 33333444 7999999999653
No 434
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=61.55 E-value=39 Score=34.32 Aligned_cols=127 Identities=7% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------------CCCCH
Q psy8199 813 LNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------------SILDP 879 (965)
Q Consensus 813 ~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------------~~~~~ 879 (965)
.+.++.+++.|-+.-..++. .| -+.++..+.++.+.+.+ .+.|-+. +|+.+ |+.+- ...+.
T Consensus 5 ~~~f~~~~~~~~~~~i~~i~-~g~p~~~~~~~~~~~l~~~G--~D~IElG--~P~sd-P~adgp~i~~a~~~al~~G~~~ 78 (262)
T 2ekc_A 5 SDKFTELKEKREKALVSYLM-VGYPDYETSLKAFKEVLKNG--TDILEIG--FPFSD-PVADGPTIQVAHEVALKNGIRF 78 (262)
T ss_dssp HHHHHHHHHHTBCEEEEEEE-TTSSCHHHHHHHHHHHHHTT--CSEEEEE--CCCSC-CTTSCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHhcCCceEEEEec-CCCCChHHHHHHHHHHHHcC--CCEEEEC--CCCCC-cccccHHHHHHHHHHHHcCCCH
Confidence 34455666655443333332 33 56677888899999998 8888776 55432 44321 11345
Q ss_pred HHHHHHHHHHHHHCCCCceeccccccccc----hhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCC
Q psy8199 880 LEFIRTIAVARITMPTSRIRMSAGRKEMG----ETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949 (965)
Q Consensus 880 ~~~~~~ia~~R~~lp~~~i~i~~~~~~~~----~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~ 949 (965)
..+++++...|...|+..+.+-++|+.+. ..+-..+..+|+++++..+-. . ....+..+.+++.|+
T Consensus 79 ~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~--~--ee~~~~~~~~~~~gl 148 (262)
T 2ekc_A 79 EDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLP--P--EEAEELKAVMKKYVL 148 (262)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCC--H--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCC--H--HHHHHHHHHHHHcCC
Confidence 66778888888887666666666776431 234456788999998876521 1 012333445556664
No 435
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=60.80 E-value=20 Score=38.17 Aligned_cols=88 Identities=10% Similarity=-0.033 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc--ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhC-CCeEec
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~--~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG-~~~i~i 791 (965)
+.++..+.++.+.+.|+..+.+..|...... .......++++.+++ .++.+..+.+..+.+..+.+.+.| +|.+.+
T Consensus 227 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 4677888888888999999999865421100 111224556677775 678888888988999999999998 999999
Q ss_pred cCCC--CHHHHhcc
Q psy8199 792 NLDT--SPKLYGDI 803 (965)
Q Consensus 792 ~~es--~~~~~~~i 803 (965)
+=.. +|+..+++
T Consensus 307 GR~~lanPdl~~ki 320 (340)
T 3gr7_A 307 GRELLRNPYWPYAA 320 (340)
T ss_dssp CHHHHHCTTHHHHH
T ss_pred cHHHHhCchHHHHH
Confidence 8322 55554443
No 436
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=60.72 E-value=80 Score=31.91 Aligned_cols=124 Identities=11% Similarity=0.027 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCce-eeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------------CCCCCHH
Q psy8199 814 NTLKNVRNVGINI-CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------------SSILDPL 880 (965)
Q Consensus 814 ~~i~~~~~~Gi~v-~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------------~~~~~~~ 880 (965)
+.++.+++.|-+. ...++.|- -+.++..+.++.+.+.+ .+.+-+. +|+.. |+.+ ....+..
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~g~-~~~~~~~~~~~~l~~~G--ad~ielg--~p~~d-p~~dg~~i~~a~~~al~~g~~~~ 80 (262)
T 1rd5_A 7 DTMAALMAKGKTAFIPYITAGD-PDLATTAEALRLLDGCG--ADVIELG--VPCSD-PYIDGPIIQASVARALASGTTMD 80 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEETTS-SCHHHHHHHHHHHHHTT--CSSEEEE--CCCSC-CTTSCHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHhcCCceEEEEeeCCC-CCHHHHHHHHHHHHHcC--CCEEEEC--CCCCC-cccCCHHHHHHHHHHHHcCCCHH
Confidence 4455666665543 33343322 45688888899999988 8888776 55432 3333 1224677
Q ss_pred HHHHHHHHHHHHCCCCceeccccccccc-hhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCC
Q psy8199 881 EFIRTIAVARITMPTSRIRMSAGRKEMG-ETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949 (965)
Q Consensus 881 ~~~~~ia~~R~~lp~~~i~i~~~~~~~~-~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~ 949 (965)
+.++++...|... +..+.+..+++... .... .+..+||+++.+.+- +. ....+.+..+++.|+
T Consensus 81 ~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~~~-~a~~aGadgv~v~d~--~~--~~~~~~~~~~~~~g~ 144 (262)
T 1rd5_A 81 AVLEMLREVTPEL-SCPVVLLSYYKPIMFRSLA-KMKEAGVHGLIVPDL--PY--VAAHSLWSEAKNNNL 144 (262)
T ss_dssp HHHHHHHHHGGGC-SSCEEEECCSHHHHSCCTH-HHHHTTCCEEECTTC--BT--TTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC-CCCEEEEecCcHHHHHHHH-HHHHcCCCEEEEcCC--Ch--hhHHHHHHHHHHcCC
Confidence 7788888777763 34344444444211 1122 378899999888653 11 123455555566664
No 437
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=60.63 E-value=1.3e+02 Score=29.46 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+++.-+ ......+ .++..++.+++..+.. +. ...+.-.+.|
T Consensus 15 ~~t~~~i~~l~~~a~~~~~~aVcv~p~-------~v~~~~~---~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~G 84 (220)
T 1ub3_A 15 TATLEEVAKAAEEALEYGFYGLCIPPS-------YVAWVRA---RYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARG 84 (220)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEECCGG-------GHHHHHH---HCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEECHH-------HHHHHHH---HhCCCCceEEEEecCCCCCCchHHHHHHHHHHHHcC
Confidence 357899999999999999999998333 1222222 2334567777655443 22 3455566679
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeecc-c
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINN-L 863 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~-~ 863 (965)
.+.+.+-+.- ..+ +...++..++-+..++++--....-+|+-.+ -+++++....+...+++ .++|..+. |
T Consensus 85 Adevd~vini-----g~~-~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaG--ADfVKTsTGf 156 (220)
T 1ub3_A 85 ADEVDMVLHL-----GRA-KAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGG--ADFLKTSTGF 156 (220)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHT--CSEEECCCSS
T ss_pred CCEEEecccc-----hhh-hCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC--CCEEEeCCCC
Confidence 9988766521 111 1234666666666666532112333444443 47899999999999999 89997652 2
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCcc--EEeeC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGAN--SIFYG 926 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan--~~~~g 926 (965)
.| ...+.++...+... .-++..+.++++... .+.....+.+||+ +++.|
T Consensus 157 ~~---------~gat~~dv~~m~~~---vg~~v~VkaaGGirt--~~~al~~i~aGa~RiG~S~g 207 (220)
T 1ub3_A 157 GP---------RGASLEDVALLVRV---AQGRAQVKAAGGIRD--RETALRMLKAGASRLGTSSG 207 (220)
T ss_dssp SS---------CCCCHHHHHHHHHH---HTTSSEEEEESSCCS--HHHHHHHHHTTCSEEEETTH
T ss_pred CC---------CCCCHHHHHHHHHh---hCCCCeEEEECCCCC--HHHHHHHHHCCCcccchhHH
Confidence 21 12344443333322 234566777765543 2233345789999 44443
No 438
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=60.26 E-value=1.2e+02 Score=33.49 Aligned_cols=175 Identities=10% Similarity=-0.001 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
.++.++.+ .+.+ |+..+.+.+... .....++++..+ +. ...+.+-......++-.+.+.+.+|.|.+.+..-
T Consensus 68 ~~~~~iA~---~y~~-~A~~IsvLTd~~-~F~gs~~dL~~v-r~--~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 68 FDPARIAA---IYKH-YASAISVLTDEK-YFQGSFNFLPIV-SQ--IAPQPILCKDFIIDPYQIYLARYYQADACLLMLS 139 (452)
T ss_dssp CCHHHHHH---HHTT-TCSEEEEECCST-TTCCCTTHHHHH-HH--HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETT
T ss_pred CCHHHHHH---HHHh-hCcEEEEEeccc-ccCCCHHHHHHH-HH--hcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEcc
Confidence 34555543 3333 377777765532 222334444332 21 2567776666777888888899999999988764
Q ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC
Q psy8199 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874 (965)
Q Consensus 795 s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~ 874 (965)
. -+.++..+.++.+++.|+.+-.-+ .|.+|+. .+.+++ ++.|.++..-- .| .
T Consensus 140 ~-----------l~~~~l~~l~~~a~~lgm~~LvEv-----h~~eE~~----~A~~lg--a~iIGinnr~L--~t----~ 191 (452)
T 1pii_A 140 V-----------LDDDQYRQLAAVAHSLEMGVLTEV-----SNEEEQE----RAIALG--AKVVGINNRDL--RD----L 191 (452)
T ss_dssp T-----------CCHHHHHHHHHHHHHTTCEEEEEE-----CSHHHHH----HHHHTT--CSEEEEESEET--TT----T
T ss_pred c-----------CCHHHHHHHHHHHHHcCCeEEEEe-----CCHHHHH----HHHHCC--CCEEEEeCCCC--CC----C
Confidence 3 123567778888999887653211 4566544 445678 88999884321 12 1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 875 ~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
..+.+...++. -.+|...+.++-+-... ++-...+..+ |+++.+|+.++..
T Consensus 192 -~~dl~~~~~L~----~~ip~~~~vIaEsGI~t-~edv~~~~~~-a~avLVGealmr~ 242 (452)
T 1pii_A 192 -SIDLNRTRELA----PKLGHNVTVISESGINT-YAQVRELSHF-ANGFLIGSALMAH 242 (452)
T ss_dssp -EECTHHHHHHH----HHHCTTSEEEEESCCCC-HHHHHHHTTT-CSEEEECHHHHTC
T ss_pred -CCCHHHHHHHH----HhCCCCCeEEEECCCCC-HHHHHHHHHh-CCEEEEcHHHcCC
Confidence 22333333333 23454334555443333 3333455778 9999999987544
No 439
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=60.22 E-value=1.3e+02 Score=29.46 Aligned_cols=175 Identities=12% Similarity=0.125 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecC----CCC----HHHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLG----MLN----ENQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~----~~~----~e~l~~Lk~aG 785 (965)
..+.+++.+.++++.+.|+..+++..+. .....+.++ .+.++...+ ... ....+...++|
T Consensus 16 ~~t~~~i~~l~~~a~~~g~~~v~v~~~~-------v~~~~~~l~-----~v~v~~v~~~P~g~~~~~~k~~~~~~A~~~G 83 (225)
T 1mzh_A 16 HLSEKEIEEFVLKSEELGIYAVCVNPYH-------VKLASSIAK-----KVKVCCVIGFPLGLNKTSVKVKEAVEAVRDG 83 (225)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEECGGG-------HHHHHHHCS-----SSEEEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHH-------HHHHHHHhc-----CCceeeEecCCCCccchhhhHHHHHHHHHcC
Confidence 3678999999999999999999973331 222222221 456554332 111 23345667799
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
.+.+.+-+.- .- .+...++...+-++.++++.-++..-+++-- +-+.+++.+..+.+.+.+ .+.|..+.
T Consensus 84 ad~Id~viN~--g~----~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~eaG--ad~I~tst-- 153 (225)
T 1mzh_A 84 AQELDIVWNL--SA----FKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAG--ADFIKTST-- 153 (225)
T ss_dssp CSEEEEECCH--HH----HHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHT--CSEEECCC--
T ss_pred CCEEEEEecH--HH----HhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEECC--
Confidence 9998843322 11 1233456667777777764324444444443 367888999999999999 88885442
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccchhhHHHHhhcCccE
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
| ++ ....+.+.+..+ +... ++..+...++-.. .+-....+.+||+.
T Consensus 154 ---g--~~-~gga~~~~i~~v----~~~v~~~ipVia~GGI~t--~~da~~~l~aGA~~ 200 (225)
T 1mzh_A 154 ---G--FA-PRGTTLEEVRLI----KSSAKGRIKVKASGGIRD--LETAISMIEAGADR 200 (225)
T ss_dssp ---S--CS-SSCCCHHHHHHH----HHHHTTSSEEEEESSCCS--HHHHHHHHHTTCSE
T ss_pred ---C--CC-CCCCCHHHHHHH----HHHhCCCCcEEEECCCCC--HHHHHHHHHhCchH
Confidence 1 11 112233333322 2223 2444444444332 33344557899994
No 440
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=59.62 E-value=1.3e+02 Score=29.18 Aligned_cols=188 Identities=7% Similarity=0.005 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEE--ecCCCCHHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL--TLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~--~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
.+.++.++.++++.. .+..+-+..+.+ ...=.+.++.+++. +..+.+ ..........+.+.++|++.+.
T Consensus 13 ~~~~~~~~~~~~~~~-~v~~~kv~~~~f------~~~G~~~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~it 85 (216)
T 1q6o_A 13 QTMDSAYETTRLIAE-EVDIIEVGTILC------VGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVT 85 (216)
T ss_dssp SSHHHHHHHHHHHGG-GCSEEEECHHHH------HHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhcc-cCCEEEECHHHH------HHhCHHHHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEE
Confidence 456777777776643 345555544421 11112345555553 344332 3333456667889999999999
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEE-ecCCCHHHHHHHHHHHHhcCCCCCceee--ccccccC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII-GLSESRDQRAELIFQLANLNPYPESVPI--NNLVQIK 867 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~-Gl~et~ed~~~~l~~l~~l~~~~~~i~~--~~~~P~~ 867 (965)
+..++.++ ...++++.+++.|.++... ++ ++ | .... +.+.+++ ...+.+ ..+...+
T Consensus 86 vh~~~g~~------------~l~~~~~~~~~~g~~~~~~-ll~~~--t-~~~~---~~l~~~~--~~~~vl~~a~~~~~~ 144 (216)
T 1q6o_A 86 VICCADIN------------TAKGALDVAKEFNGDVQIE-LTGYW--T-WEQA---QQWRDAG--IGQVVYHRSRDAQAA 144 (216)
T ss_dssp EETTSCHH------------HHHHHHHHHHHTTCEEEEE-ECSCC--C-HHHH---HHHHHTT--CCEEEEECCHHHHHT
T ss_pred EeccCCHH------------HHHHHHHHHHHcCCCceee-eeeCC--C-hhhH---HHHHhcC--cHHHHHHHHHHHHhc
Confidence 88766432 1234566777778775322 23 33 3 2222 2333444 232222 1122234
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
|.. . +++++.++ |...+ +..+-+..+-. .+....++.+|||.+++|..+ +... ++.+..+.++
T Consensus 145 G~~--g----~~~~i~~l----r~~~~~~~~i~v~GGI~---~~~~~~~~~aGad~ivvG~~I-~~a~-dp~~~~~~~~ 208 (216)
T 1q6o_A 145 GVA--W----GEADITAI----KRLSDMGFKVTVTGGLA---LEDLPLFKGIPIHVFIAGRSI-RDAA-SPVEAARQFK 208 (216)
T ss_dssp TCC--C----CHHHHHHH----HHHHHTTCEEEEESSCC---GGGGGGGTTSCCSEEEESHHH-HTSS-CHHHHHHHHH
T ss_pred CCC--C----CHHHHHHH----HHhcCCCCcEEEECCcC---hhhHHHHHHcCCCEEEEeehh-cCCC-CHHHHHHHHH
Confidence 532 1 34444333 33333 33244444332 223446789999999999865 4322 3444444443
No 441
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=59.40 E-value=1.1e+02 Score=33.01 Aligned_cols=84 Identities=8% Similarity=0.044 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-c--CcEeEE--ecCCCCHH---HHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I--GLETCL--TLGMLNEN---QAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~--~~~i~~--~~~~~~~e---~l~~Lk~aG~ 786 (965)
.+++++.+.++.+.+.|++.+-+--|. +.+.-.+.++++++ . ++.+.+ |.+.-.++ .++.|.+.|+
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~iKiKvG~------~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i 223 (389)
T 3ozy_A 150 LTPDQAADELAGWVEQGFTAAKLKVGR------APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGC 223 (389)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCS------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCCCCEEeeccCC------CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCC
Confidence 568999999999999999999886553 35666777777775 2 344444 33333222 3567788899
Q ss_pred CeEeccCCC-CHHHHhccc
Q psy8199 787 DYYNHNLDT-SPKLYGDII 804 (965)
Q Consensus 787 ~~i~i~~es-~~~~~~~i~ 804 (965)
..+.-.+.. +.+.+++++
T Consensus 224 ~~iEqP~~~~d~~~~~~l~ 242 (389)
T 3ozy_A 224 YWFEEPLSIDDIEGHRILR 242 (389)
T ss_dssp SEEESCSCTTCHHHHHHHH
T ss_pred CEEECCCCcccHHHHHHHH
Confidence 888766655 556666666
No 442
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=59.13 E-value=32 Score=35.62 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCC
Q psy8199 775 ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNP 853 (965)
Q Consensus 775 ~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~ 853 (965)
.+.++.|-++|++.|.++.-. .+.+++ +.++.+.+..-.+. +.++ .-..+++...++.+...+
T Consensus 30 ~~i~~~L~~~Gv~~IE~g~p~-----------~~~~d~-e~v~~i~~~~~~~~---i~~l~~~~~~di~~a~~~~~~ag- 93 (293)
T 3ewb_X 30 IQIALQLEKLGIDVIEAGFPI-----------SSPGDF-ECVKAIAKAIKHCS---VTGLARCVEGDIDRAEEALKDAV- 93 (293)
T ss_dssp HHHHHHHHHHTCSEEEEECGG-----------GCHHHH-HHHHHHHHHCCSSE---EEEEEESSHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHcCCCEEEEeCCC-----------CCccHH-HHHHHHHHhcCCCE---EEEEecCCHHHHHHHHHHHhhcC-
Confidence 345778888999999887522 012222 22333333322222 2223 234567777777666666
Q ss_pred CCCceeeccccccCCCCCCCCCCCCHHHH----HHHHHHHHHHCCCCceecccc---cc--ccchhhHHHHhhcCccEEe
Q psy8199 854 YPESVPINNLVQIKGTPLYGSSILDPLEF----IRTIAVARITMPTSRIRMSAG---RK--EMGETTQAFCFLAGANSIF 924 (965)
Q Consensus 854 ~~~~i~~~~~~P~~gT~l~~~~~~~~~~~----~~~ia~~R~~lp~~~i~i~~~---~~--~~~~~~~~~~l~~Gan~~~ 924 (965)
.+.|.+ |.+...+-....-..+.++. .+++..+|..-.. +...+. +. ....++...+..+||+.+.
T Consensus 94 -~~~v~i--~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~--v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~ 168 (293)
T 3ewb_X 94 -SPQIHI--FLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDV--VQFSPEDATRSDRAFLIEAVQTAIDAGATVIN 168 (293)
T ss_dssp -SEEEEE--EEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSC--EEEEEETGGGSCHHHHHHHHHHHHHTTCCEEE
T ss_pred -CCEEEE--EecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCE--EEEEeccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 555543 34433221111112355544 4455555544322 223221 11 1113445566789999999
Q ss_pred eCCccccCCCCCChhhHHHHHH
Q psy8199 925 YGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 925 ~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
+.+ |.+..+|.+...+++.
T Consensus 169 l~D---T~G~~~P~~v~~lv~~ 187 (293)
T 3ewb_X 169 IPD---TVGYTNPTEFGQLFQD 187 (293)
T ss_dssp EEC---SSSCCCHHHHHHHHHH
T ss_pred ecC---CCCCCCHHHHHHHHHH
Confidence 988 7776677777666653
No 443
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=59.12 E-value=47 Score=33.37 Aligned_cols=102 Identities=9% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCC
Q psy8199 776 NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYP 855 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~ 855 (965)
+..+.+++.|+....+..... .+.+...+.++.+++.|.+.... ..+ .+.+.+..+.+++.+ +
T Consensus 65 ~~~~~l~~~gl~i~~~~~~~~----------~~~~~~~~~i~~A~~lGa~~v~~---~p~--~~~l~~l~~~a~~~g--v 127 (257)
T 3lmz_A 65 AFHDKCAAHKVTGYAVGPIYM----------KSEEEIDRAFDYAKRVGVKLIVG---VPN--YELLPYVDKKVKEYD--F 127 (257)
T ss_dssp HHHHHHHHTTCEEEEEEEEEE----------CSHHHHHHHHHHHHHHTCSEEEE---EEC--GGGHHHHHHHHHHHT--C
T ss_pred HHHHHHHHcCCeEEEEecccc----------CCHHHHHHHHHHHHHhCCCEEEe---cCC--HHHHHHHHHHHHHcC--C
Confidence 445556667775544432111 45677778888888888754331 112 244455555666666 2
Q ss_pred CceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccc
Q psy8199 856 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904 (965)
Q Consensus 856 ~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~ 904 (965)
.+.+-+.-| +++ .-.+.+++.+++.. .-|+..+.+..++
T Consensus 128 -~l~lEn~~~-~~~-----~~~~~~~~~~ll~~---~~p~vg~~~D~~h 166 (257)
T 3lmz_A 128 -HYAIHLHGP-DIK-----TYPDATDVWVHTKD---LDPRIGMCLDVGH 166 (257)
T ss_dssp -EEEEECCCT-TCS-----SSCSHHHHHHHHTT---SCTTEEEEEEHHH
T ss_pred -EEEEecCCC-ccc-----ccCCHHHHHHHHHh---CCCCccEEEchhh
Confidence 222221111 122 12367777777641 2465555555544
No 444
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=59.00 E-value=1.2e+02 Score=30.83 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc-------------------cHHHHHHHHHHHHhc-CcEeEEecCCCC-
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDR-------------------DLDNIENMICEVKKI-GLETCLTLGMLN- 774 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~-------------------~~~~~~~~~~~i~~~-~~~i~~~~~~~~- 774 (965)
+.+.-++.++.+.+. ++-+.+ +.|+.+. ..+.+++.++++++. .+.+.. .+..+
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IEl---G~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~-m~y~n~ 102 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEI---GLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFL-MTYLNP 102 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEE---ECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEE-ECCHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEE---CCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEE-EecCcH
Q ss_pred ------HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHH
Q psy8199 775 ------ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQL 848 (965)
Q Consensus 775 ------~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l 848 (965)
+..++.++++|++.+.+. +-..++..+..+.+++.|+. .-.++....+.+ .++.+
T Consensus 103 v~~~g~~~f~~~~~~aG~dGviv~-------------Dl~~ee~~~~~~~~~~~gl~--~i~liap~s~~e----ri~~i 163 (271)
T 1ujp_A 103 VLAWGPERFFGLFKQAGATGVILP-------------DLPPDEDPGLVRLAQEIGLE--TVFLLAPTSTDA----RIATV 163 (271)
T ss_dssp HHHHCHHHHHHHHHHHTCCEEECT-------------TCCGGGCHHHHHHHHHHTCE--EECEECTTCCHH----HHHHH
T ss_pred HHHhhHHHHHHHHHHcCCCEEEec-------------CCCHHHHHHHHHHHHHcCCc--eEEEeCCCCCHH----HHHHH
Q ss_pred HhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCc
Q psy8199 849 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 849 ~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
.+.. ..++.+-.+.-.-|+ .........+.++..|... +..+-+..+-.. ++....+ .||+++++|..
T Consensus 164 a~~~--~gfiy~vs~~G~TG~-----~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t--~e~a~~~--~~ADgVIVGSA 231 (271)
T 1ujp_A 164 VRHA--TGFVYAVSVTGVTGM-----RERLPEEVKDLVRRIKART-ALPVAVGFGVSG--KATAAQA--AVADGVVVGSA 231 (271)
T ss_dssp HTTC--CSCEEEECC-----------------CCHHHHHHHHTTC-CSCEEEESCCCS--HHHHHHH--TTSSEEEECHH
T ss_pred HHhC--CCCEEEEecCcccCC-----CCCCCccHHHHHHHHHhhc-CCCEEEEcCCCC--HHHHHHh--cCCCEEEEChH
Q ss_pred cc
Q psy8199 929 LL 930 (965)
Q Consensus 929 ~~ 930 (965)
++
T Consensus 232 i~ 233 (271)
T 1ujp_A 232 LV 233 (271)
T ss_dssp HH
T ss_pred Hh
No 445
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=58.75 E-value=1.3e+02 Score=31.65 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCCeEeccCCC-C--HHHHhcc---cC---CCCHHHH----HHHHHHHHHc-CCceeeeEEEe----cCCC
Q psy8199 776 NQAYRLKKVGLDYYNHNLDT-S--PKLYGDI---IS---TRDYENR----LNTLKNVRNV-GINICCGGIIG----LSES 837 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~~es-~--~~~~~~i---~~---~~~~~~~----~~~i~~~~~~-Gi~v~~~~i~G----l~et 837 (965)
+..++.+++|+|.|.+..-- . ...+.-. +. +.+.+.+ ++.++.++++ .+++..-+=.. -|.+
T Consensus 148 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~ 227 (340)
T 3gr7_A 148 NGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLT 227 (340)
T ss_dssp HHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCC
Confidence 34456677888887766421 0 1111111 01 2355654 4556666553 44433222211 1357
Q ss_pred HHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhh
Q psy8199 838 RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 917 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~ 917 (965)
.++..+.++.+.+.+ .+.+.+..-...+ .+....+. ..+..+...|..+. ..+-..+ ... ..+....++.
T Consensus 228 ~~~~~~la~~L~~~G--vd~i~vs~g~~~~-~~~~~~~~----~~~~~~~~ik~~~~-iPVi~~G-gI~-s~e~a~~~L~ 297 (340)
T 3gr7_A 228 AKDYVPYAKRMKEQG--VDLVDVSSGAIVP-ARMNVYPG----YQVPFAELIRREAD-IPTGAVG-LIT-SGWQAEEILQ 297 (340)
T ss_dssp GGGHHHHHHHHHHTT--CCEEEEECCCSSC-CCCCCCTT----TTHHHHHHHHHHTT-CCEEEES-SCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCEEEEecCCccC-CCCCCCcc----ccHHHHHHHHHHcC-CcEEeeC-CCC-CHHHHHHHHH
Confidence 889999999999999 8888775211111 11111111 12334444455553 2232222 222 2444556788
Q ss_pred cC-ccEEeeCCccccCCCCCChhhHHHHHHcCCCc
Q psy8199 918 AG-ANSIFYGDKLLTTDNTKTNDDSKLLKKLGINT 951 (965)
Q Consensus 918 ~G-an~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~ 951 (965)
.| |+.+++|-.++.. ++=..++.+.+|..+
T Consensus 298 ~G~aD~V~iGR~~lan----Pdl~~ki~~~l~~~~ 328 (340)
T 3gr7_A 298 NGRADLVFLGRELLRN----PYWPYAAARELGAKI 328 (340)
T ss_dssp TTSCSEEEECHHHHHC----TTHHHHHHHHTTCCC
T ss_pred CCCeeEEEecHHHHhC----chHHHHHHHHCCCCC
Confidence 88 9999999876543 444556667777653
No 446
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=58.48 E-value=61 Score=35.37 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCC
Q psy8199 775 ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP 853 (965)
Q Consensus 775 ~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~ 853 (965)
.+.++.|-++|++.|.++.-. +|. -.+.++.+.+.+.... ++...-.+.+++ +.+.+.+
T Consensus 64 l~Ia~~L~~~Gv~~IEvG~P~asp~-------------d~~~~~~i~~~~~~~~--v~~~~r~~~~di----~~A~~aG- 123 (423)
T 3ivs_A 64 IQIAKALDNFGVDYIELTSPVASEQ-------------SRQDCEAICKLGLKCK--ILTHIRCHMDDA----RVAVETG- 123 (423)
T ss_dssp HHHHHHHHHHTCSEEEECCTTSCHH-------------HHHHHHHHHTSCCSSE--EEEEEESCHHHH----HHHHHTT-
T ss_pred HHHHHHHHHcCCCEEEEeecccCHH-------------HHHHHHHHHhcCCCCE--EEEeeccChhhH----HHHHHcC-
Confidence 345778888999999888633 332 2344555566665432 222222445553 4445567
Q ss_pred CCCceeeccccccCCCCCCCCCCCC----HHHHHHHHHHHHHHCCCCceeccccc-cc--cchhhHHHHhhcCccEEeeC
Q psy8199 854 YPESVPINNLVQIKGTPLYGSSILD----PLEFIRTIAVARITMPTSRIRMSAGR-KE--MGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 854 ~~~~i~~~~~~P~~gT~l~~~~~~~----~~~~~~~ia~~R~~lp~~~i~i~~~~-~~--~~~~~~~~~l~~Gan~~~~g 926 (965)
.+.|.+. ++...+-....-..+ .+...+.+..+|..--.+...+...+ .. ...++...+..+||+.+.+.
T Consensus 124 -~~~V~i~--~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~ 200 (423)
T 3ivs_A 124 -VDGVDVV--IGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA 200 (423)
T ss_dssp -CSEEEEE--EEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred -CCEEEEE--eeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccC
Confidence 6655443 544322221111123 34555667777654322222222111 11 11234455678999999888
Q ss_pred CccccCCCCCChhhHHHHHH
Q psy8199 927 DKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 927 ~~~~t~~~~~~~~~~~~~~~ 946 (965)
+ |.+..+|.+...+++.
T Consensus 201 D---TvG~~~P~~v~~lv~~ 217 (423)
T 3ivs_A 201 D---TVGCATPRQVYDLIRT 217 (423)
T ss_dssp E---TTSCCCHHHHHHHHHH
T ss_pred C---ccCcCCHHHHHHHHHH
Confidence 8 7777777777666654
No 447
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=58.47 E-value=1.5e+02 Score=29.43 Aligned_cols=175 Identities=11% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CHH----HHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NEN----QAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~e----~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+..+ ......+. ++..++.+++..+.. +.+ ..+.-.+.|
T Consensus 39 ~~t~~~i~~lc~eA~~~~~~aVcV~p~-------~v~~a~~~---L~~s~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~G 108 (239)
T 3ngj_A 39 DATEEQIRKLCSEAAEYKFASVCVNPT-------WVPLCAEL---LKGTGVKVCTVIGFPLGATPSEVKAYETKVAVEQG 108 (239)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG-------GHHHHHHH---HTTSSCEEEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEECHH-------HHHHHHHH---hCCCCCeEEEEeccCCCCCchHHHHHHHHHHHHcC
Confidence 367899999999999999999999222 23333333 345677877754432 222 344555679
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeec-
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN- 861 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~- 861 (965)
.+.+.+-+.- .. +. ...++.+.+-++.++++ +. ..-+|+-.+ -|++++....+...+.+ .++|..+
T Consensus 109 AdEIDmViNi--g~---lk-~g~~~~v~~eI~~v~~a~~~~--~lKVIlEt~~Lt~eei~~a~~ia~~aG--ADfVKTST 178 (239)
T 3ngj_A 109 AEEVDMVINI--GM---VK-AKKYDDVEKDVKAVVDASGKA--LTKVIIECCYLTNEEKVEVCKRCVAAG--AEYVKTST 178 (239)
T ss_dssp CSEEEEECCH--HH---HH-TTCHHHHHHHHHHHHHHHTTS--EEEEECCGGGSCHHHHHHHHHHHHHHT--CSEEECCC
T ss_pred CCEEEEEeeh--HH---hc-cccHHHHHHHHHHHHHHhcCC--ceEEEEecCCCCHHHHHHHHHHHHHHC--cCEEECCC
Confidence 9888766521 11 11 44566666666666553 33 223344333 58888999999999999 8998766
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
-|.+ ...+.+++.-+-.. .=++..+.++++... .+.....+.+||+.
T Consensus 179 Gf~~---------ggAt~~dv~lmr~~---vg~~v~VKasGGIrt--~~da~~~i~aGA~r 225 (239)
T 3ngj_A 179 GFGT---------HGATPEDVKLMKDT---VGDKALVKAAGGIRT--FDDAMKMINNGASR 225 (239)
T ss_dssp SSSS---------CCCCHHHHHHHHHH---HGGGSEEEEESSCCS--HHHHHHHHHTTEEE
T ss_pred CCCC---------CCCCHHHHHHHHHh---hCCCceEEEeCCCCC--HHHHHHHHHhcccc
Confidence 1211 12344433222221 224555666665433 23344568999995
No 448
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=58.24 E-value=1e+02 Score=33.00 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=45.1
Q ss_pred HHHHHHHCCCCEEEEeeccCCC-Cc-----ccHHHHHHHHHHHH-hc------CcEeEE-ecCCCCHHHHHHHHHhCCCe
Q psy8199 723 AAQKAKSDGATRFCMGAAWREL-KD-----RDLDNIENMICEVK-KI------GLETCL-TLGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~-~~-----~~~~~~~~~~~~i~-~~------~~~i~~-~~~~~~~e~l~~Lk~aG~~~ 788 (965)
.++...+.|+..+.+.....+. +. .-..++.++++.++ +. +..+.. ..|. ...++.|+++|++.
T Consensus 202 ~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~--~~~l~~l~~~g~d~ 279 (367)
T 1r3s_A 202 YLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG--HFALEELAQAGYEV 279 (367)
T ss_dssp HHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC--GGGHHHHTTSSCSE
T ss_pred HHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc--HHHHHHHHhcCCCE
Confidence 3344556799988776643321 11 12345566666776 44 344444 3443 67899999999998
Q ss_pred EeccCCCCHHHH
Q psy8199 789 YNHNLDTSPKLY 800 (965)
Q Consensus 789 i~i~~es~~~~~ 800 (965)
+++.-..+.+..
T Consensus 280 i~~d~~~dl~~a 291 (367)
T 1r3s_A 280 VGLDWTVAPKKA 291 (367)
T ss_dssp EECCTTSCHHHH
T ss_pred EEeCCCCCHHHH
Confidence 887633354333
No 449
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=57.77 E-value=1.5e+02 Score=29.35 Aligned_cols=152 Identities=15% Similarity=0.259 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEec------C--CCCHHHHHHH-HH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTL------G--MLNENQAYRL-KK 783 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~------~--~~~~e~l~~L-k~ 783 (965)
.+.+++++++..+.+.|+.-+-+--.... ..+.+.+.+.++.+++. .+.+-.+. | ..+++.+..| +.
T Consensus 14 ~~~~e~~~~~~~~~~~~~D~vElRvD~l~--~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 91 (238)
T 1sfl_A 14 LSIEETLIQKINHRIDAIDVLELRIDQFE--NVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISD 91 (238)
T ss_dssp C---CHHHHHHHHTTTTCSEEEEECTTST--TCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEecccc--cCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 46788999998888888777666444322 22477888888888763 44543322 2 2355544333 33
Q ss_pred h----CCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE-EecCCCHHHHHHHHHHHHhcCCCCCce
Q psy8199 784 V----GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI-IGLSESRDQRAELIFQLANLNPYPESV 858 (965)
Q Consensus 784 a----G~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i-~Gl~et~ed~~~~l~~l~~l~~~~~~i 858 (965)
+ +++++.+-+... ...+...+.++.+++.|.++-...= +.---+.+++.+.+..+.+++ .+.+
T Consensus 92 ~~~~~~~d~iDvEl~~~----------~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~g--aDiv 159 (238)
T 1sfl_A 92 LANINGIDMIDIEWQAD----------IDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFN--PEYV 159 (238)
T ss_dssp GGGCTTCCEEEEECCTT----------SCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTC--CSEE
T ss_pred HHHhCCCCEEEEEccCC----------CChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcC--CCEE
Confidence 2 356666655430 0123344666778888876532221 111134589999999999999 7877
Q ss_pred eeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 859 ~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
.+-.. +.+..+.++++...+.+
T Consensus 160 Kia~~------------a~~~~D~l~ll~~~~~~ 181 (238)
T 1sfl_A 160 KLAVM------------PHNKNDVLNLLQAMSTF 181 (238)
T ss_dssp EEEEC------------CSSHHHHHHHHHHHHHH
T ss_pred EEEec------------CCCHHHHHHHHHHHHHH
Confidence 66511 24678888888776654
No 450
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=56.98 E-value=47 Score=34.58 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccC-CC-CcccHHHHHHHHHHHHh-cCcEeEEec-CC----CCHHHHHHHHHhCCC--
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWR-EL-KDRDLDNIENMICEVKK-IGLETCLTL-GM----LNENQAYRLKKVGLD-- 787 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~-~~-~~~~~~~~~~~~~~i~~-~~~~i~~~~-~~----~~~e~l~~Lk~aG~~-- 787 (965)
+.+++.+++..+.|+.-+.+.+.+. |. ...+.+...+.++.+++ .++.++ + +. .+.++++.-.++|.+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vpls--I~DT~~~~~~~~V~eaal~aga~~k 151 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLM--IIGCGVEEKDAEIFPVIGEALSGRN 151 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEE--EECCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEE--EECCCCCCCCHHHHHHHHHhCCCCC
Confidence 7889999999999999999987443 32 12456777778888875 355554 4 55 688999999999886
Q ss_pred -eEe-ccCCCCHHHHhccc---------CCCCHHHHHHHHHHHHHcCC---ceeeeEEEe-cCCCHHHHHHHHHHHHh
Q psy8199 788 -YYN-HNLDTSPKLYGDII---------STRDYENRLNTLKNVRNVGI---NICCGGIIG-LSESRDQRAELIFQLAN 850 (965)
Q Consensus 788 -~i~-i~~es~~~~~~~i~---------~~~~~~~~~~~i~~~~~~Gi---~v~~~~i~G-l~et~ed~~~~l~~l~~ 850 (965)
.++ +.-+..++..+-.. ...+.+...+.++.+.++|+ ++...-.+| ++-+.+.-...++.++.
T Consensus 152 ~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~ 229 (310)
T 2h9a_B 152 CLLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRL 229 (310)
T ss_dssp CEEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred CEEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHH
Confidence 221 22211233332111 01134555555666666666 344444444 24444444455555555
No 451
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.61 E-value=1.1e+02 Score=29.63 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=88.0
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHH
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 800 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~ 800 (965)
+.++.+.+.|++.+.+... ..+.+.+.+.++.+.+ .+..+.++ +.++...++|++.++++.+..+.
T Consensus 17 ~~~~~a~~~Gv~~v~lr~k-----~~~~~~~~~~i~~l~~~~~~~livn------d~~~~A~~~gadgvhl~~~~~~~-- 83 (210)
T 3ceu_A 17 KIITALFEEGLDILHLRKP-----ETPAMYSERLLTLIPEKYHRRIVTH------EHFYLKEEFNLMGIHLNARNPSE-- 83 (210)
T ss_dssp HHHHHHHHTTCCEEEECCS-----SCCHHHHHHHHHHSCGGGGGGEEES------SCTTHHHHTTCSEEECCSSSCSC--
T ss_pred HHHHHHHHCCCCEEEEccC-----CCCHHHHHHHHHHHHHHhCCeEEEe------CCHHHHHHcCCCEEEECcccccc--
Confidence 5566777889998888522 2345667777776654 45666654 33377788999999988654211
Q ss_pred hcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCH
Q psy8199 801 GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 879 (965)
Q Consensus 801 ~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~ 879 (965)
... . ..++|.. .|.++... +. .+ .+.+.+.+++|.+.-|-. .++.+.
T Consensus 84 ---~~~---------------~------~~~ig~s~~t~~e~~~----A~-~G--aDyv~~g~vf~t~sk~~~-~~~~g~ 131 (210)
T 3ceu_A 84 ---PHD---------------Y------AGHVSCSCHSVEEVKN----RK-HF--YDYVFMSPIYDSISKVNY-YSTYTA 131 (210)
T ss_dssp ---CTT---------------C------CSEEEEEECSHHHHHT----TG-GG--SSEEEECCCC----------CCCCH
T ss_pred ---ccc---------------c------CCEEEEecCCHHHHHH----Hh-hC--CCEEEECCcCCCCCCCCC-CCCCCH
Confidence 000 0 3466774 77776432 23 67 889988888775433221 123444
Q ss_pred HHHHHHHHHHHHHC-CCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 880 LEFIRTIAVARITM-PTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 880 ~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+.+.++ +..+ ++..+-..++-. .+.-..++.+||+++-++..+..
T Consensus 132 ~~l~~~----~~~~~~~iPviaiGGI~---~~nv~~~~~~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 132 EELREA----QKAKIIDSKVMALGGIN---EDNLLEIKDFGFGGAVVLGDLWN 177 (210)
T ss_dssp HHHHHH----HHTTCSSTTEEEESSCC---TTTHHHHHHTTCSEEEESHHHHT
T ss_pred HHHHHH----HHhcCCCCCEEEECCCC---HHHHHHHHHhCCCEEEEhHHhHc
Confidence 433222 2222 233333333332 22333557899999988886644
No 452
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=56.48 E-value=34 Score=34.85 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-c--CcEeEEecCCCCHHHHHHHHHhCCCeEecc-
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I--GLETCLTLGMLNENQAYRLKKVGLDYYNHN- 792 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~- 792 (965)
..++...++.....|.+-+.+-.+..+ .. .++++++++ . ++.+..-.|..+.+.++.+.++|+|.+.+|
T Consensus 185 ~A~~~aYa~~gad~G~~lV~LD~~~~~---v~----~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 185 TEEIDRYLHVARAFGFHMVYLYSRNEH---VP----PEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEECSSSC---CC----HHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCc---CC----HHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 333467777777889998888765411 11 245555554 5 789999999999999999999999999998
Q ss_pred -CCCC--HHHHhcccC
Q psy8199 793 -LDTS--PKLYGDIIS 805 (965)
Q Consensus 793 -~es~--~~~~~~i~~ 805 (965)
+..+ ++..+++.+
T Consensus 258 Aav~d~~Pelv~e~a~ 273 (286)
T 3vk5_A 258 ALEQPDWRSALAEIAG 273 (286)
T ss_dssp GGSSTTHHHHHHHHHC
T ss_pred hhhcCCCHHHHHHHHH
Confidence 3335 667666654
No 453
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=56.05 E-value=37 Score=36.22 Aligned_cols=88 Identities=18% Similarity=0.043 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCc--ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhC-CCeE
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR-ELKD--RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~--~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG-~~~i 789 (965)
.+.++.++.++.+.+.|+..+.+..|.. +... .......+.++.+++ .++.+..+.+..+.+..+.+.+.| +|.+
T Consensus 236 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 236 WSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 4678899999999999999999985432 1100 011233456666765 578888888888999999999998 9999
Q ss_pred eccCCC--CHHHHhc
Q psy8199 790 NHNLDT--SPKLYGD 802 (965)
Q Consensus 790 ~i~~es--~~~~~~~ 802 (965)
.++=.. +|+..++
T Consensus 316 ~iGR~~lanPdl~~k 330 (349)
T 3hgj_A 316 LLGRVLLRDPYFPLR 330 (349)
T ss_dssp EESTHHHHCTTHHHH
T ss_pred EecHHHHhCchHHHH
Confidence 988322 4544433
No 454
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=55.96 E-value=86 Score=31.82 Aligned_cols=193 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCC-----------HHHHHHHH
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN-----------ENQAYRLK 782 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~-----------~e~l~~Lk 782 (965)
..+.+++.+.++.+.+.|+..++...+ +.+.+.........+.+....-+ .+.++...
T Consensus 41 ~~~~~~~~~~~~~~~~~g~~~i~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~ 109 (273)
T 2qjg_A 41 IKGLIDIRKTVNDVAEGGANAVLLHKG-----------IVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAI 109 (273)
T ss_dssp CTTSSSHHHHHHHHHHHTCSEEEECHH-----------HHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECSCHHHHH
T ss_pred CcchhhHHHHHHHHHhcCCCEEEeCHH-----------HHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHHHHHHHH
Q ss_pred HhCCCeE--eccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe-----cCCCHHHHHHHHHHHHhcCCC
Q psy8199 783 KVGLDYY--NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG-----LSESRDQRAELIFQLANLNPY 854 (965)
Q Consensus 783 ~aG~~~i--~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G-----l~et~ed~~~~l~~l~~l~~~ 854 (965)
++|++.+ .+..-+ +.+..- +...+..+.+++.|+++....... -+.+.++..+..+.+.+.+
T Consensus 110 ~~Ga~~v~~~l~~~~~~~~~~~--------~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~G-- 179 (273)
T 2qjg_A 110 RMGADAVSIHVNVGSDEDWEAY--------RDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELG-- 179 (273)
T ss_dssp HTTCSEEEEEEEETSTTHHHHH--------HHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTT--
T ss_pred HcCCCEEEEEEecCCCCHHHHH--------HHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcC--
Q ss_pred CCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhh----HHHHhhcCccEEeeCCccc
Q psy8199 855 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETT----QAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 855 ~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~----~~~~l~~Gan~~~~g~~~~ 930 (965)
.+.+.+.. +.+.+.+.++.... +..+...++-..-..+- -..++.+||+++.+|..+.
T Consensus 180 ad~i~~~~-------------~~~~~~l~~i~~~~-----~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~ 241 (273)
T 2qjg_A 180 ADIVKTSY-------------TGDIDSFRDVVKGC-----PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIF 241 (273)
T ss_dssp CSEEEECC-------------CSSHHHHHHHHHHC-----SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHH
T ss_pred CCEEEECC-------------CCCHHHHHHHHHhC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhh
Q ss_pred cCCCCCChhhHHHHHHc
Q psy8199 931 TTDNTKTNDDSKLLKKL 947 (965)
Q Consensus 931 t~~~~~~~~~~~~~~~~ 947 (965)
.... +.+..+.+.+.
T Consensus 242 ~~~~--~~~~~~~l~~~ 256 (273)
T 2qjg_A 242 QHDD--VVGITRAVCKI 256 (273)
T ss_dssp TSSS--HHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHHH
No 455
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=55.72 E-value=1.9e+02 Score=29.82 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-c-CcEeEEe----cCCCCHHHHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLT----LGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~-~~~i~~~----~~~~~~e~l~~Lk~aG~~~ 788 (965)
.+++++++.++.+.+.|++.+.+.+.. . ...+..+.++++.+++ . ++.+.++ .|.-.. ....-.++|++.
T Consensus 156 ~~~~~~~~~~~~~~~~G~d~i~l~DT~-G--~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~A-n~laAv~aGa~~ 231 (302)
T 2ftp_A 156 VDPRQVAWVARELQQMGCYEVSLGDTI-G--VGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALA-NIYASLLEGIAV 231 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEESS-S--CCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHH-HHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC-C--CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHH-HHHHHHHhCCCE
Confidence 578999999999999999999997542 2 2457788889999886 3 3445443 344444 444455789999
Q ss_pred EeccCCC-CHHHHhcc-cCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 789 YNHNLDT-SPKLYGDI-ISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 789 i~i~~es-~~~~~~~i-~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+...+-. -+--|..- .++-..++.+..++ +.|+.+ +-..+.+.+..+++.+.
T Consensus 232 vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~---~~g~~~--------~idl~~l~~~~~~~~~~ 285 (302)
T 2ftp_A 232 FDSSVAGLGGCPYAKGATGNVASEDVLYLLN---GLEIHT--------GVDMHALVDAGQRICAV 285 (302)
T ss_dssp EEEBGGGCCBCGGGTTCBCBCBHHHHHHHHH---HTTCBC--------CCCHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCCCCCCCCChhHHHHHHHHH---hcCCCC--------CcCHHHHHHHHHHHHHH
Confidence 9988855 22122222 23345677776665 356554 33567777777777664
No 456
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=55.54 E-value=1.2e+02 Score=31.16 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHcCCceeeeEEEec-C-CCHHHHHHHHHHHHh
Q psy8199 808 DYENRLNTLKNVRNVGINICCGGIIGL-S-ESRDQRAELIFQLAN 850 (965)
Q Consensus 808 ~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~-et~ed~~~~l~~l~~ 850 (965)
+.++.++..+.+.++|..-..-+.--+ . -+.+++.++.+.+.+
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 119 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCS 119 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 345555555556665553211111111 2 355666666555554
No 457
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=55.35 E-value=62 Score=32.19 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHCCCCEEEEeeccCCC--CcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHH
Q psy8199 724 AQKAKSDGATRFCMGAAWREL--KDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLY 800 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~~~--~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~ 800 (965)
++.+.+.|+..+.+.+-.... ...+++ .++.+++ ..+.+..+.|..+.+.+..+.++|++.+.++= .++
T Consensus 160 ~~~~~~~G~d~i~~~~~~~~g~~~~~~~~----~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgs----al~ 231 (253)
T 1h5y_A 160 AKEVEELGAGEILLTSIDRDGTGLGYDVE----LIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAAS----LFH 231 (253)
T ss_dssp HHHHHHHTCSEEEEEETTTTTTCSCCCHH----HHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH----HHH
T ss_pred HHHHHhCCCCEEEEecccCCCCcCcCCHH----HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHH----HHH
Confidence 445556689998886543211 112333 3344443 47788888898888888889999999998882 222
Q ss_pred hcccCCCCHHHHHHHHHHHHHcCCcee
Q psy8199 801 GDIISTRDYENRLNTLKNVRNVGINIC 827 (965)
Q Consensus 801 ~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 827 (965)
+ ...+. .+..+.+++.|+.+.
T Consensus 232 ~---~~~~~---~~~~~~l~~~g~~~~ 252 (253)
T 1h5y_A 232 F---RVLSI---AQVKRYLKERGVEVR 252 (253)
T ss_dssp T---TSSCH---HHHHHHHHHTTCBCC
T ss_pred c---CCCCH---HHHHHHHHHcCCCCC
Confidence 1 22233 455556778888764
No 458
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=55.30 E-value=88 Score=38.83 Aligned_cols=196 Identities=15% Similarity=0.063 Sum_probs=104.7
Q ss_pred ccHHHHHHHHHHHHhc--CcEeEEecC-CCCH----HHHHHHHHhCCCeEeccCCC-CHHHHhcccC--CCCHHHHHHHH
Q psy8199 747 RDLDNIENMICEVKKI--GLETCLTLG-MLNE----NQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTL 816 (965)
Q Consensus 747 ~~~~~~~~~~~~i~~~--~~~i~~~~~-~~~~----e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~--~~~~~~~~~~i 816 (965)
...+.+.+.++.+++. ...+..+.. ..+. +.++.+.++|++.+.+++-+ .......... ...++...+.+
T Consensus 616 ~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv 695 (1025)
T 1gte_A 616 KTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 695 (1025)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHH
Confidence 3466777767777652 344544441 2233 34556667899999999876 3210011100 13567777788
Q ss_pred HHHHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc-ccccC-----C-----------CCCCCC-CCC
Q psy8199 817 KNVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN-LVQIK-----G-----------TPLYGS-SIL 877 (965)
Q Consensus 817 ~~~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~-~~P~~-----g-----------T~l~~~-~~~ 877 (965)
+.+++. ++++..-+.. +.+++.+.++.+.+.+ .+.|.+.. +.... + +..... .+.
T Consensus 696 ~~v~~~~~~Pv~vK~~~----~~~~~~~~a~~~~~~G--~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~ 769 (1025)
T 1gte_A 696 RWVRQAVQIPFFAKLTP----NVTDIVSIARAAKEGG--ADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTA 769 (1025)
T ss_dssp HHHHHHCSSCEEEEECS----CSSCHHHHHHHHHHHT--CSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGG
T ss_pred HHHHHhhCCceEEEeCC----ChHHHHHHHHHHHHcC--CCEEEEeccccccccccccccccccccccccccCCCCCccc
Confidence 888775 6666544322 2235677788888888 78887731 11110 0 111111 111
Q ss_pred CHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCC----hhhHHHHHHcCCC
Q psy8199 878 DPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT----NDDSKLLKKLGIN 950 (965)
Q Consensus 878 ~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~----~~~~~~~~~~g~~ 950 (965)
.....++.+...+..+|+..+...++- ....+ ...++.+||+.+++|..++..+-.-. ++....+...|+.
T Consensus 770 ~~~~~~~~v~~v~~~~~~ipvi~~GGI-~s~~d-a~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~~G~~ 844 (1025)
T 1gte_A 770 IRPIALRAVTTIARALPGFPILATGGI-DSAES-GLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIE 844 (1025)
T ss_dssp GHHHHHHHHHHHHHHSTTCCEEEESSC-CSHHH-HHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTCG
T ss_pred chhHHHHHHHHHHHHcCCCCEEEecCc-CCHHH-HHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHHHcCCC
Confidence 112224556666666666544444433 22233 34557799999999987654332112 2334556677774
No 459
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=55.24 E-value=20 Score=37.90 Aligned_cols=94 Identities=10% Similarity=0.051 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHC--CCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCC-HHH-HHHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN-ENQ-AYRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~--g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~-~e~-l~~Lk~aG~~~i~i 791 (965)
++++..+.++.+.+. ++..|-+.+.+.. .+.+.+.+.++..++.|+.+.++.|... .+. .+.+...|.+++-+
T Consensus 144 ~~~~a~~~~~~a~~~~~~vvG~dL~g~E~~---~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~rigH 220 (326)
T 3pao_A 144 SEEQAQKTLDQALPFRDAFIAVGLDSSEVG---HPPSKFQRVFDRARSEGFLTVAHAGEEGPPEYIWEALDLLKVERIDH 220 (326)
T ss_dssp CHHHHHHHHHHHGGGGGGCSEEEEESCCTT---CCGGGGHHHHHHHHHTTCEECEEESSSSCHHHHHHHHHTTCCSSEEE
T ss_pred CHHHHHHHHHHHhhccccceeeCCCCCCCC---CCHHHHHHHHHHHHHcCCceeeecCCCCCHHHHHHHHhcCCCceeee
Confidence 345544444433332 6888888766433 3456677788888888999999887663 344 44565689999988
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCce
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 826 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v 826 (965)
++...++ -+.++.+++.|+.+
T Consensus 221 gv~l~~d--------------~~l~~~l~~~~i~l 241 (326)
T 3pao_A 221 GVRAFED--------------ERLMRRLIDEQIPL 241 (326)
T ss_dssp CGGGGGC--------------HHHHHHHHHHTCCE
T ss_pred eeeeccc--------------HHHHHHHHHcCCeE
Confidence 8755211 24566677777643
No 460
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=55.14 E-value=76 Score=34.56 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCC----CcccHHHHHHHHHHHHh-c--CcEeEE--ecCCCCHH---HHHHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWREL----KDRDLDNIENMICEVKK-I--GLETCL--TLGMLNEN---QAYRLK 782 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~----~~~~~~~~~~~~~~i~~-~--~~~i~~--~~~~~~~e---~l~~Lk 782 (965)
.+++++.+.++++.+.|++.+-+ .|..+. ...+++.-++.++++++ . ++.+.+ |.+...++ .++.|.
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~ 202 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELE 202 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999 443211 12245667778888886 2 334443 33333232 246677
Q ss_pred HhCCCeEeccCCC-CHHHHhcccC
Q psy8199 783 KVGLDYYNHNLDT-SPKLYGDIIS 805 (965)
Q Consensus 783 ~aG~~~i~i~~es-~~~~~~~i~~ 805 (965)
+.|+..+.-.+.. +-+.+++++.
T Consensus 203 ~~~i~~iEeP~~~~d~~~~~~l~~ 226 (405)
T 3rr1_A 203 PYRPLFIEEPVLAEQAETYARLAA 226 (405)
T ss_dssp GGCCSCEECSSCCSSTHHHHHHHT
T ss_pred hcCCCEEECCCCcccHHHHHHHHh
Confidence 7888888755544 4455555543
No 461
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=55.05 E-value=1.9e+02 Score=29.69 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=100.1
Q ss_pred HHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhc-c--cC---CCCHHHHHHHHHHHHH-cCCceee
Q psy8199 756 ICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD-I--IS---TRDYENRLNTLKNVRN-VGINICC 828 (965)
Q Consensus 756 ~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~-i--~~---~~~~~~~~~~i~~~~~-~Gi~v~~ 828 (965)
++++++.+-. ..-++..|.-..+.+.++|++.+.++= + .... . .+ ..+.++.+..++.+.+ ..+++..
T Consensus 9 lr~l~~~~~~-i~~~~a~D~~sA~~~~~aG~~ai~vs~-~---~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~Pvia 83 (295)
T 1xg4_A 9 FRAALTKENP-LQIVGTINANHALLAQRAGYQAIYLSG-G---GVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLV 83 (295)
T ss_dssp HHHHHHHSSS-EEEEECSSHHHHHHHHHTTCSCEEECH-H---HHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHhCCCc-EEEecCcCHHHHHHHHHcCCCEEEECc-h---HhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEe
Confidence 4444443322 233455578888888999999888771 1 1221 1 12 2488999988888665 5678888
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccc-ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccccc
Q psy8199 829 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV-QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEM 907 (965)
Q Consensus 829 ~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~-P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~ 907 (965)
.+=.|+|.+.++..+++..+.+.+ ..-|.+--=. |..-.-+....-.+.++....|..++..-......+.+.-...
T Consensus 84 D~d~Gyg~~~~~~~~~v~~l~~aG--a~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~ 161 (295)
T 1xg4_A 84 DADIGFGSSAFNVARTVKSMIKAG--AAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDAL 161 (295)
T ss_dssp ECTTCSSSSHHHHHHHHHHHHHHT--CSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCH
T ss_pred cCCcccCCCHHHHHHHHHHHHHcC--CeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHh
Confidence 888888889999999999999988 6666554211 1110112222345777888888888877533223333321111
Q ss_pred c-------hhhHHHHhhcCccEEeeCC
Q psy8199 908 G-------ETTQAFCFLAGANSIFYGD 927 (965)
Q Consensus 908 ~-------~~~~~~~l~~Gan~~~~g~ 927 (965)
. .+-.+....+||+.++...
T Consensus 162 ~~~gl~~ai~ra~ay~eAGAd~i~~e~ 188 (295)
T 1xg4_A 162 AVEGLDAAIERAQAYVEAGAEMLFPEA 188 (295)
T ss_dssp HHHCHHHHHHHHHHHHHTTCSEEEETT
T ss_pred hhcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 1122233469999999863
No 462
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=54.44 E-value=2.2e+02 Score=30.07 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHH-cCCceeeeEEEecCCCHHHHHHHHHHHH
Q psy8199 771 GMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLA 849 (965)
Q Consensus 771 ~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~et~ed~~~~l~~l~ 849 (965)
+...++..+.+.++|++.+.+.+....+.+... .+..++.+.+.++.+++ .++++..-++ |.+-+.++ ++.+.
T Consensus 126 ~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~-~~~~~~~~~~~i~~vr~~~~~Pv~vK~~-~~~~~~~~----a~~a~ 199 (349)
T 1p0k_A 126 EATAAQAKEAVEMIGANALQIHLNVIQEIVMPE-GDRSFSGALKRIEQICSRVSVPVIVKEV-GFGMSKAS----AGKLY 199 (349)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEECTTTTC---------CTTHHHHHHHHHHHCSSCEEEEEE-SSCCCHHH----HHHHH
T ss_pred CCCHHHHHHHHHhcCCCeEEecccchhhhcCCC-CCcchHHHHHHHHHHHHHcCCCEEEEec-CCCCCHHH----HHHHH
Confidence 333344455566789999888776522211110 11112235667777765 4666654332 55555443 56677
Q ss_pred hcCCCCCceeeccccccCCCCCC--------------CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHH
Q psy8199 850 NLNPYPESVPINNLVQIKGTPLY--------------GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFC 915 (965)
Q Consensus 850 ~l~~~~~~i~~~~~~P~~gT~l~--------------~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~ 915 (965)
+.+ .+.|.+..- .||.+. ....++..+.++.+ +..+++..+-..++- ..+.+ ...+
T Consensus 200 ~~G--ad~I~v~~~---ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v---~~~~~~ipvia~GGI-~~~~d-~~k~ 269 (349)
T 1p0k_A 200 EAG--AAAVDIGGY---GGTNFSKIENLRRQRQISFFNSWGISTAASLAEI---RSEFPASTMIASGGL-QDALD-VAKA 269 (349)
T ss_dssp HHT--CSEEEEEC------------------CCGGGGTTCSCCHHHHHHHH---HHHCTTSEEEEESSC-CSHHH-HHHH
T ss_pred HcC--CCEEEEcCC---CCcchhhHHHhhcccchhhhhccCccHHHHHHHH---HHhcCCCeEEEECCC-CCHHH-HHHH
Confidence 788 788877421 232110 11123333333322 223455544333332 22233 3455
Q ss_pred hhcCccEEeeCCccccC
Q psy8199 916 FLAGANSIFYGDKLLTT 932 (965)
Q Consensus 916 l~~Gan~~~~g~~~~t~ 932 (965)
+.+||+.+++|..++..
T Consensus 270 l~~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 270 IALGASCTGMAGHFLKA 286 (349)
T ss_dssp HHTTCSEEEECHHHHHH
T ss_pred HHcCCCEEEEcHHHHHH
Confidence 77899999999876543
No 463
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=54.39 E-value=1.1e+02 Score=31.18 Aligned_cols=123 Identities=11% Similarity=0.077 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCC-----------CCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRE-----------LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~-----------~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
++...+++ .+++.|+..+ +--..-. -....++...+++++.++.++... ....++++.+.+.+
T Consensus 108 ~~~g~~Le---~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti--~~v~~~eeA~amA~ 181 (286)
T 2p10_A 108 MVMSTFLR---ELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTT--PYVFSPEDAVAMAK 181 (286)
T ss_dssp CCHHHHHH---HHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEEC--CEECSHHHHHHHHH
T ss_pred cCHHHHHH---HHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEE--EecCCHHHHHHHHH
Confidence 45677774 4456688887 4222000 223457888999998888776532 33458999999999
Q ss_pred hCCCeEeccCCC--CHHHHhcccCCCCHHH----HHHHHHHHHHcCCceeeeEEEec-C-CCHHHHHHHHHH
Q psy8199 784 VGLDYYNHNLDT--SPKLYGDIISTRDYEN----RLNTLKNVRNVGINICCGGIIGL-S-ESRDQRAELIFQ 847 (965)
Q Consensus 784 aG~~~i~i~~es--~~~~~~~i~~~~~~~~----~~~~i~~~~~~Gi~v~~~~i~Gl-~-et~ed~~~~l~~ 847 (965)
+|.|.+.+-.-- ...... ....+.++ ..++.+.+++..=. .-++.+- | .+.+|+...++.
T Consensus 182 agpDiI~~h~glT~gglIG~--~~avs~~~~~e~i~~i~~a~~~vnpd--vivLc~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 182 AGADILVCHMGLTTGGAIGA--RSGKSMDDCVSLINECIEAARTIRDD--IIILSHGGPIANPEDARFILDS 249 (286)
T ss_dssp HTCSEEEEECSCC-----------CCCHHHHHHHHHHHHHHHHHHCSC--CEEEEESTTCCSHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCcccC--CCcccHHHhHHHHHHHHHHHHHhCCC--cEEEecCCCCCCHHHHHHHHhc
Confidence 999998766542 121111 22234444 34444445554322 2344444 3 899998887755
No 464
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=54.34 E-value=1.6e+02 Score=30.35 Aligned_cols=154 Identities=13% Similarity=0.072 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhccc-CCCCHHHHHHHHHHHHHc--CCceeeeEEEecCCCHHHHHHHHH
Q psy8199 771 GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII-STRDYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAELIF 846 (965)
Q Consensus 771 ~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~-~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~et~ed~~~~l~ 846 (965)
+.-|.-..+.+.++|++.+.++=.+ .-..+-.-. ...++++.+...+.+.+. .+++...+=.|+|. .++..++++
T Consensus 24 ~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~-~~~v~~tv~ 102 (302)
T 3fa4_A 24 GVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGG-PIMVARTTE 102 (302)
T ss_dssp EECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSS-HHHHHHHHH
T ss_pred cCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCC-HHHHHHHHH
Confidence 4446777888889999998874222 111111111 134788888888887764 67888888888874 788999999
Q ss_pred HHHhcCCCCCceeecccc-ccCCCCCCCCCCCCHHHHHHHHHHHHHHC----CCCceecccc--cc-ccc--hhhHHHHh
Q psy8199 847 QLANLNPYPESVPINNLV-QIKGTPLYGSSILDPLEFIRTIAVARITM----PTSRIRMSAG--RK-EMG--ETTQAFCF 916 (965)
Q Consensus 847 ~l~~l~~~~~~i~~~~~~-P~~gT~l~~~~~~~~~~~~~~ia~~R~~l----p~~~i~i~~~--~~-~~~--~~~~~~~l 916 (965)
.+.+.+ ..-|.+---+ |....-+...+..+.++...-|..+|..- ++..|..-+. +. .+. .+-...-.
T Consensus 103 ~l~~aG--aagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~ 180 (302)
T 3fa4_A 103 QYSRSG--VAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAAR 180 (302)
T ss_dssp HHHHTT--CCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHH
T ss_pred HHHHcC--CcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHH
Confidence 999888 5555543211 22111122345568888888888877653 4544433221 11 010 01112234
Q ss_pred hcCccEEeeCC
Q psy8199 917 LAGANSIFYGD 927 (965)
Q Consensus 917 ~~Gan~~~~g~ 927 (965)
.+|||.+|+..
T Consensus 181 eAGAD~ifi~g 191 (302)
T 3fa4_A 181 DAGADVGFLEG 191 (302)
T ss_dssp TTTCSEEEETT
T ss_pred HcCCCEEeecC
Confidence 68999999854
No 465
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=54.03 E-value=59 Score=34.62 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccH------HHHHHHHHHHHh-c-CcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDL------DNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~------~~~~~~~~~i~~-~-~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.++..+.++.+.+.|+..+.+.+.......... ..-.+.++.+++ . .+.+..+.|..+.+.++.+.+ |+|
T Consensus 142 ~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD 220 (350)
T 3b0p_A 142 TYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVD 220 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSS
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCC
Confidence 4677888888888999999999764211000000 012355666665 4 789999999999999999887 999
Q ss_pred eEeccCC--CCHHHHhccc
Q psy8199 788 YYNHNLD--TSPKLYGDII 804 (965)
Q Consensus 788 ~i~i~~e--s~~~~~~~i~ 804 (965)
.+.++=- .+|..++++.
T Consensus 221 ~V~iGRa~l~~P~l~~~i~ 239 (350)
T 3b0p_A 221 GVMLGRAVYEDPFVLEEAD 239 (350)
T ss_dssp EEEECHHHHHCGGGGTTHH
T ss_pred EEEECHHHHhCcHHHHHHH
Confidence 9999833 3677776653
No 466
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=53.90 E-value=42 Score=33.65 Aligned_cols=112 Identities=10% Similarity=0.104 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEec--CCC--CHHHHHHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--GML--NENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~--~~~--~~e~l~~Lk~aG~~~i~i 791 (965)
+.+...+.++.+++.|+..|.|.- .++....+.+...++++..+ ++.++++- +.. ..+.++.|.+.|+++|.-
T Consensus 71 E~~~M~~Di~~~~~~GadGvV~G~-Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILT 147 (256)
T 1twd_A 71 EFAAILEDVRTVRELGFPGLVTGV-LDVDGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVLT 147 (256)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECC-BCTTSSBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEee-ECCCCCcCHHHHHHHHHHhC--CCcEEEECchhccCCHHHHHHHHHHcCCCEEEC
Confidence 367778888999999999999843 34555677888888887664 56666532 111 356699999999998863
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHH-cCCceeeeEEEecCCCHHHHHHH
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAEL 844 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~et~ed~~~~ 844 (965)
+=.. .+..+-+..++.+.+ ++ ...+|.|-|-+.+.+.+.
T Consensus 148 SG~~-----------~~a~~g~~~L~~Lv~~a~---~i~Im~GgGv~~~Ni~~l 187 (256)
T 1twd_A 148 SGQK-----------SDALQGLSKIMELIAHRD---APIIMAGAGVRAENLHHF 187 (256)
T ss_dssp CTTS-----------SSTTTTHHHHHHHHTSSS---CCEEEEESSCCTTTHHHH
T ss_pred CCCC-----------CCHHHHHHHHHHHHHhhC---CcEEEecCCcCHHHHHHH
Confidence 3111 112233445555444 34 567899888555555443
No 467
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=53.52 E-value=59 Score=37.12 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=63.3
Q ss_pred HHHHHHHHHHCCCCEEEEeeccC--CCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHH-hCCCeEeccCCC
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWR--ELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK-VGLDYYNHNLDT 795 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~--~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~-aG~~~i~i~~es 795 (965)
.++.++++.+.|+..+.+++-.. ...-.+ .++++.+++ ..+.+..+.|..+.+.++++.+ .|++.+.++
T Consensus 454 ~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d----~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg--- 526 (555)
T 1jvn_A 454 VWELTRACEALGAGEILLNCIDKDGSNSGYD----LELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA--- 526 (555)
T ss_dssp HHHHHHHHHHTTCCEEEECCGGGTTTCSCCC----HHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEES---
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCCCCC----HHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHH---
Confidence 45566777789999998866322 111123 344455554 5889999999999999999998 899998887
Q ss_pred CHHHHhcccCCCCHHHHHHHHHHHHHcCCcee
Q psy8199 796 SPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827 (965)
Q Consensus 796 ~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~ 827 (965)
..+ ..+..++++.++ .+++.|+.+.
T Consensus 527 --~a~--~~~~~~~~e~~~---~l~~~gi~~r 551 (555)
T 1jvn_A 527 --GMF--HRGEFTVNDVKE---YLLEHGLKVR 551 (555)
T ss_dssp --HHH--HTTSCCHHHHHH---HHHHTTCCCC
T ss_pred --HHH--HcCCCCHHHHHH---HHHHCCCccc
Confidence 222 223445555444 4678888765
No 468
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=53.24 E-value=12 Score=39.45 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=62.1
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH-hCCCeEeccCC--CCHH
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK-VGLDYYNHNLD--TSPK 798 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~-aG~~~i~i~~e--s~~~ 798 (965)
+.++.+.+.|+..+.+.++........... .+.++.+++ .+.+..+.|..+.+.+.++.+ .|++.+.+|=- .+|.
T Consensus 144 ~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~-~~~i~~i~~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~ 221 (318)
T 1vhn_A 144 EIYRILVEEGVDEVFIHTRTVVQSFTGRAE-WKALSVLEK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221 (318)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTTTSSCCC-GGGGGGSCC-SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTT
T ss_pred HHHHHHHHhCCCEEEEcCCCccccCCCCcC-HHHHHHHHc-CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcc
Confidence 566777788999999976532111001011 145566666 888999999989888888777 79999999933 3677
Q ss_pred HHhcccC--------CCCHHHHHHHHHH
Q psy8199 799 LYGDIIS--------TRDYENRLNTLKN 818 (965)
Q Consensus 799 ~~~~i~~--------~~~~~~~~~~i~~ 818 (965)
.+.++.. ..+++++++.+..
T Consensus 222 l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 249 (318)
T 1vhn_A 222 IFKQIKDFLRSGKYSEPSREEILRTFER 249 (318)
T ss_dssp HHHHHHHHHHHSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 7666532 1355555555444
No 469
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=53.23 E-value=66 Score=33.99 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------------cc-c---HHHHHHHHHHHHh-c--CcEeEEecCCCCH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK------------DR-D---LDNIENMICEVKK-I--GLETCLTLGMLNE 775 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------------~~-~---~~~~~~~~~~i~~-~--~~~i~~~~~~~~~ 775 (965)
.+.+++.+.++.+.+.|+..+.+.++..... .. . ....++.++.+++ . .+.+..+.|..+.
T Consensus 222 ~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~ 301 (336)
T 1f76_A 222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSV 301 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 3567888888999999999999875421100 00 1 2344577777775 4 7889999999999
Q ss_pred HHHHHHHHhCCCeEecc
Q psy8199 776 NQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~ 792 (965)
+.+.++.++|++.+.++
T Consensus 302 ~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 302 IAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHCCCCEEEee
Confidence 99999999999999887
No 470
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=53.14 E-value=31 Score=37.06 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCC-c--ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhC-CCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELK-D--RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVG-LDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~-~--~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG-~~~i~ 790 (965)
+.++..+.++.+.+.|+..+.+..+..... . .......+.++.+++ .++.+..+.+..+.+..+.+.+.| +|.|.
T Consensus 244 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~ 323 (363)
T 3l5l_A 244 TLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVS 323 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEE
Confidence 478889999999999999999987642110 0 011223456666665 578888888888999999999998 99999
Q ss_pred ccCCC--CHHHHhcc
Q psy8199 791 HNLDT--SPKLYGDI 803 (965)
Q Consensus 791 i~~es--~~~~~~~i 803 (965)
++=.. +|+..+++
T Consensus 324 iGR~~lanPdl~~k~ 338 (363)
T 3l5l_A 324 VGRAHLADPHWAYFA 338 (363)
T ss_dssp CCHHHHHCTTHHHHH
T ss_pred ecHHHHhCchHHHHH
Confidence 88322 45554443
No 471
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=52.95 E-value=51 Score=35.37 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCC
Q psy8199 776 NQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPY 854 (965)
Q Consensus 776 e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~ 854 (965)
+.++.|-++|++.|..+.-. .+..++ +.++.+.+..-.+. +.++. -+.+++...++.+...+
T Consensus 38 ~ia~~L~~~Gv~~IE~g~p~-----------~~~~d~-e~v~~i~~~~~~~~---i~~l~r~~~~di~~a~~al~~ag-- 100 (370)
T 3rmj_A 38 RVARQLEKLGVDIIEAGFAA-----------ASPGDF-EAVNAIAKTITKST---VCSLSRAIERDIRQAGEAVAPAP-- 100 (370)
T ss_dssp HHHHHHHHHTCSEEEEEEGG-----------GCHHHH-HHHHHHHTTCSSSE---EEEEEESSHHHHHHHHHHHTTSS--
T ss_pred HHHHHHHHcCCCEEEEeCCC-----------CCHHHH-HHHHHHHHhCCCCe---EEEEecCCHHHHHHHHHHHhhCC--
Confidence 44677788899988887532 112222 23333333322222 12232 36778877777777777
Q ss_pred CCceeeccccccCCCCCCCCCCCCHHHHHHHH----HHHHHHCCCCceecccc---cc--ccchhhHHHHhhcCccEEee
Q psy8199 855 PESVPINNLVQIKGTPLYGSSILDPLEFIRTI----AVARITMPTSRIRMSAG---RK--EMGETTQAFCFLAGANSIFY 925 (965)
Q Consensus 855 ~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~i----a~~R~~lp~~~i~i~~~---~~--~~~~~~~~~~l~~Gan~~~~ 925 (965)
.+.|.+ |.+....-....-..+.++.++.+ ..+|..-.. +...+. +. ....++...+..+||+.+.+
T Consensus 101 ~~~v~i--f~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l 176 (370)
T 3rmj_A 101 KKRIHT--FIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDD--VEFSCEDALRSEIDFLAEICGAVIEAGATTINI 176 (370)
T ss_dssp SEEEEE--EEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSC--EEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEE--EecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE--EEEecCCCCccCHHHHHHHHHHHHHcCCCEEEe
Confidence 555543 344332211112234666665553 344433221 222221 11 11234555677899999999
Q ss_pred CCccccCCCCCChhhHHHHHH
Q psy8199 926 GDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 926 g~~~~t~~~~~~~~~~~~~~~ 946 (965)
.+ |.+..+|.+...+++.
T Consensus 177 ~D---T~G~~~P~~~~~lv~~ 194 (370)
T 3rmj_A 177 PD---TVGYSIPYKTEEFFRE 194 (370)
T ss_dssp EC---SSSCCCHHHHHHHHHH
T ss_pred cC---ccCCcCHHHHHHHHHH
Confidence 98 7877777777666653
No 472
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=52.74 E-value=2.6e+02 Score=31.47 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-c--CcEeEE--e--cCCCCHHHHHHHHHhCCCe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I--GLETCL--T--LGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~--~~~i~~--~--~~~~~~e~l~~Lk~aG~~~ 788 (965)
+++.+++.++++.+.|++.|+|.+...- .....+.++++.+++ . ++.+.+ + .|.-....+ .-.++|++.
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~l-aAveAGa~~ 248 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSIALKDMAAL---LKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM-KAIEAGVDV 248 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTCC---CCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHH-HHHHTTCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCC---cCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHH-HHHHhCCCE
Confidence 6899999999999999999999765322 335667777777765 3 445544 2 244334444 445789999
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
+...+.. +.+-.++-+.+..+.+++. .|+.+ |-..+.+.+..+++.++.
T Consensus 249 VD~ti~g----~GertGN~~lE~lv~~L~~---~g~~t--------gidl~~L~~is~~v~~~~ 297 (539)
T 1rqb_A 249 VDTAISS----MSLGPGHNPTESVAEMLEG---TGYTT--------NLDYDRLHKIRDHFKAIR 297 (539)
T ss_dssp EEEBCGG----GCSTTSBCBHHHHHHHTTT---SSEEC--------CCCHHHHHHHHHHHHHHG
T ss_pred EEEeccc----cCCCccChhHHHHHHHHHh---cCCCc--------hhhHHHHHHHHHHHHHHh
Confidence 9777743 2222444456666665543 34332 346677777777776654
No 473
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=52.49 E-value=1.2e+02 Score=31.04 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCcee
Q psy8199 808 DYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVP 859 (965)
Q Consensus 808 ~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~ 859 (965)
+.+++.+.++.+.+.--. +|.|.| .+-++.++..+.+.+.+ .+.+-
T Consensus 50 s~eEr~~v~~~~~~~~~g----ViaGvg~~~t~~ai~la~~A~~~G--adavl 96 (288)
T 2nuw_A 50 SKDEKRQNLNALYDVTHK----LIFQVGSLNLNDVMELVKFSNEMD--ILGVS 96 (288)
T ss_dssp CHHHHHHHHHHHTTTCSC----EEEECCCSCHHHHHHHHHHHHTSC--CSEEE
T ss_pred CHHHHHHHHHHHHHHhCC----eEEeeCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence 455566666555543111 555664 45555666666666665 45443
No 474
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=52.31 E-value=26 Score=37.63 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCC-HHH-HHHHHHhCCCeEeccCCC
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN-ENQ-AYRLKKVGLDYYNHNLDT 795 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~-~e~-l~~Lk~aG~~~i~i~~es 795 (965)
.++++.+......++-.|-+.+.+...+...++.+.+.++..++.|+.+.++.|... .+. .+.+...|.+++-+++..
T Consensus 160 ~e~~~la~~~~~~~vvG~dL~g~E~~~~~~~~~~f~~~f~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~RIgHgv~l 239 (367)
T 3iar_A 160 PKVVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGYHT 239 (367)
T ss_dssp HHHHHHHHHTTTTTEEEEEEESCTTSTTGGGCHHHHHHHHHHHHHTCEEEEEESSSSCHHHHHHHHHTSCCSEEEECGGG
T ss_pred HHHHHHHHhhCCCCEEEEcCCCcccCCCcchHHHHHHHHHHHHHcCCeeEEecCCcCChHHHHHHHHccCCceeeeeeee
Confidence 566666665555577778887654332211135677888888888999999887664 333 455656899999999755
No 475
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=52.08 E-value=70 Score=35.86 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT- 795 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es- 795 (965)
+..+.++.+.+.|+..+.+.+.. + ....+.+.++++++. ++.+.. ....+.+..+.+.++|+|.+.++...
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~-g----~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg~g~G 302 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAH-G----HSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKVGIGPG 302 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSC-C----SBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEECSSCS
T ss_pred chHHHHHHHhhcccceEEecccC-C----cchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEECCCCC
Confidence 44556677778899988886553 2 125677888888874 444443 23568899999999999999987543
Q ss_pred CHHHHhcccC--CCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 796 SPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 796 ~~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
+.-.-+.... .-.++-..+..+.+++.++++. ..=| .+.+|+.+.+. ++ .+.+.+.
T Consensus 303 s~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVI----a~GGI~~~~di~kal~----~G--Ad~V~vG 361 (490)
T 4avf_A 303 SICTTRIVAGVGVPQISAIANVAAALEGTGVPLI----ADGGIRFSGDLAKAMV----AG--AYCVMMG 361 (490)
T ss_dssp TTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEE----EESCCCSHHHHHHHHH----HT--CSEEEEC
T ss_pred cCCCccccCCCCccHHHHHHHHHHHhccCCCcEE----EeCCCCCHHHHHHHHH----cC--CCeeeec
Confidence 3211111111 1234444555555555566542 2223 68888887764 36 5555554
No 476
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=51.88 E-value=33 Score=35.06 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=46.7
Q ss_pred HHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 726 ~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.+.+.|.+-+-+..-+......+++...++++.+. .+..+....|..+.+.++.++++|++.+.+|
T Consensus 184 ~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~~ip-~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 184 RALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAP-SDRLLVGESGIFTHEDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHTTSCCSEEEEECBCTTTCCBCTHHHHHHHHHSC-TTSEEEEESSCCSHHHHHHHHTTTCCEEEEC
T ss_pred HHHhcCCCEEEECCCCCccCCCChHHHHHHHHhCC-CCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 44467888776643322223345666666665553 3567777889999999999999999999998
No 477
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=51.88 E-value=2.3e+02 Score=29.79 Aligned_cols=69 Identities=7% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHCCCCEEEEeeccCC---CCcccH-HHHHHHHHHHHh-c-CcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 724 AQKAKSDGATRFCMGAAWRE---LKDRDL-DNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~~---~~~~~~-~~~~~~~~~i~~-~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
++...+.|+..+.+....-. ++...+ +.+...++++.+ . +..+....| -....++.+.+.|++.+++.-
T Consensus 196 ~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~iih~~g-~~~~~l~~~~~~g~d~i~~d~ 270 (348)
T 4ay7_A 196 ANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVTVLHICG-NVNPILSDMADCGFEGLSVEE 270 (348)
T ss_dssp HHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEEEEECCS-CCHHHHHHHHTSCCSEEECCG
T ss_pred HHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCCcEEEecC-CcHHHHHHHHHhccccccccc
Confidence 33445679999888764322 222222 333444455443 2 333322223 346789999999999887653
No 478
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=51.32 E-value=97 Score=30.55 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-c-CcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.+++++...+..+.-.|.+-+.+.+.+.+ . + .++++++++ . ++.+..-.|..+.|.++.+. +|+|.+.+|
T Consensus 137 ~~~e~~~~~a~~a~~~g~~~VYld~sG~~-~--~----~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVG 208 (228)
T 3vzx_A 137 LNMDDIVAYARVSELLQLPIFYLEYSGVL-G--D----IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVG 208 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECTTSC-C--C----HHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCc-C--C----HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEC
Confidence 45888888888777678888888774322 1 2 455666665 4 68999999999999999998 799999998
No 479
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=50.92 E-value=53 Score=33.04 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=11.3
Q ss_pred CChhhHHHHHHcCCC
Q psy8199 936 KTNDDSKLLKKLGIN 950 (965)
Q Consensus 936 ~~~~~~~~~~~~g~~ 950 (965)
+..+..+.+++.|+.
T Consensus 215 d~~~~~~~l~~~gy~ 229 (262)
T 3p6l_A 215 DVKGMLKELKSQNFK 229 (262)
T ss_dssp CHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHCCCC
Confidence 456778888888876
No 480
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=50.82 E-value=75 Score=34.07 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHHCCCCEEEEeeccCC-CCccc-----HHHHHHHHHHHHhc----CcEeE-EecCCCCHHHHHHHHHhCCCeEeccCCC
Q psy8199 727 AKSDGATRFCMGAAWRE-LKDRD-----LDNIENMICEVKKI----GLETC-LTLGMLNENQAYRLKKVGLDYYNHNLDT 795 (965)
Q Consensus 727 ~~~~g~~~i~l~~g~~~-~~~~~-----~~~~~~~~~~i~~~----~~~i~-~~~~~~~~e~l~~Lk~aG~~~i~i~~es 795 (965)
..+.|+..+.+.....+ ++... ..++.++++.+++. ++.+. ...| ....++.|++.|++.+++.-..
T Consensus 206 qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g--~~~~l~~l~~~g~d~i~~d~~~ 283 (368)
T 4exq_A 206 QIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKG--GGLWLEDLAATGVDAVGLDWTV 283 (368)
T ss_dssp HHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETT--CGGGHHHHHTSSCSEEECCTTS
T ss_pred HHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCC--cHHHHHHHHHhCCCEEeeCCCC
Confidence 34579998887654322 11222 23334444444432 23433 3334 2577899999999998876333
Q ss_pred CHH
Q psy8199 796 SPK 798 (965)
Q Consensus 796 ~~~ 798 (965)
+.+
T Consensus 284 dl~ 286 (368)
T 4exq_A 284 NLG 286 (368)
T ss_dssp CHH
T ss_pred CHH
Confidence 533
No 481
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=50.68 E-value=26 Score=35.87 Aligned_cols=72 Identities=14% Similarity=0.009 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
+.+|+... .+.|++.+.+.+-.......+++.+.++.+.+. .++.+....|..+.+.++.++++|++.+.+|
T Consensus 171 t~ee~~~A----~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~-~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 171 TEQEADRA----LKAGAKVIGVNARDLMTLDVDRDCFARIAPGLP-SSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp SHHHHHHH----HHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSC-TTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHH----HHCCCCEEEECCCcccccccCHHHHHHHHHhCc-ccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 45665432 345888888764322222334555544433221 2677788888888999999999999999998
No 482
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=50.50 E-value=1.1e+02 Score=33.32 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC-------CCCcccHHHHHHHHHHHHh-c--CcEeEE--ecCCCCHH---HHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR-------ELKDRDLDNIENMICEVKK-I--GLETCL--TLGMLNEN---QAY 779 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~-------~~~~~~~~~~~~~~~~i~~-~--~~~i~~--~~~~~~~e---~l~ 779 (965)
.+++++.+.++++.+.|++.+-+--|.. .....+++.-++.++++++ . ++.+.+ |.+...++ .++
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~ 222 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAK 222 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999999854421 1111236677778888876 3 344444 33332232 346
Q ss_pred HHHHhCCCeEeccCCC-CHHHHhccc
Q psy8199 780 RLKKVGLDYYNHNLDT-SPKLYGDII 804 (965)
Q Consensus 780 ~Lk~aG~~~i~i~~es-~~~~~~~i~ 804 (965)
.|.+.|+..+.-.+.. +-+.+++++
T Consensus 223 ~L~~~~i~~iEeP~~~~d~~~~~~l~ 248 (412)
T 4e4u_A 223 RLEKYDPLWFEEPVPPGQEEAIAQVA 248 (412)
T ss_dssp HHGGGCCSEEECCSCSSCHHHHHHHH
T ss_pred HhhhcCCcEEECCCChhhHHHHHHHH
Confidence 6777888888766555 555565554
No 483
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=50.36 E-value=1.9e+02 Score=29.06 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHCCC---CEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE----------ecCCCCHHHHHHH
Q psy8199 715 LSIESVITAAQKAKSDGA---TRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL----------TLGMLNENQAYRL 781 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~---~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~----------~~~~~~~e~l~~L 781 (965)
.+.++..+.++.+.+... .++.+. .| ...+..+.+.+ + ..+.+.. -.|.++ ...|
T Consensus 18 ~~~~~~~~l~~~l~~~~~~~~~ev~v~---Pp--~~~L~~v~~~~---~-~~i~vgAQn~~~~~~GA~TGEiS---~~mL 85 (255)
T 3qst_A 18 KTVQEAEKLVEMLNGAKVEGNVEVVVA---AP--FVFLPTLQQKL---R-KDWKVSAENVFTKPNGAFTGEVT---VPMI 85 (255)
T ss_dssp SSHHHHHHHHHHHHTCCCCSSCEEEEE---CC--GGGHHHHHHHS---C-TTSEEEESCCCSSSSSSCTTCCC---HHHH
T ss_pred CCHHHHHHHHHHHHhhcccCCceEEEe---CC--HHHHHHHHHHh---c-cCCeEEecccCCCCCCCccCccC---HHHH
Confidence 356777777776654311 244441 12 22234433333 2 3455544 224444 5567
Q ss_pred HHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHH--H-------HHHH-Hhc
Q psy8199 782 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE--L-------IFQL-ANL 851 (965)
Q Consensus 782 k~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~--~-------l~~l-~~l 851 (965)
+++|++++.+|. ...+.+. ..+-+..-+-++.+.++|+.+ |+=.|||.+++.. + ++.. ..+
T Consensus 86 ~d~G~~~ViiGH----SERR~~f-~Etd~~v~~Kv~~Al~~GL~p----IlCvGEtleere~g~t~~vv~~Ql~~~l~~~ 156 (255)
T 3qst_A 86 KSFGIEWTILGH----SERRDIL-KEDDEFLAAKAKFALENGMKI----IYCCGEHLSEREAGKASEFVSAQIEKMIPAI 156 (255)
T ss_dssp HTTTCCEEEESC----HHHHHTS-CCCHHHHHHHHHHHHHTTCEE----EEEECCCHHHHHTTCHHHHHHHHHHHHGGGS
T ss_pred HHcCCCEEEECc----hhhhhhc-CCCHHHHHHHHHHHHHCCCeE----EEEcCCcHHHHHcCCHHHHHHHHHHHHHccC
Confidence 799999999996 3333333 345666667788999999854 3346899887631 1 2111 111
Q ss_pred CC-CCCceeecccccc--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-------ceeccccccccchhhHHHHhhcCcc
Q psy8199 852 NP-YPESVPINNLVQI--KGTPLYGSSILDPLEFIRTIAVARITMPTS-------RIRMSAGRKEMGETTQAFCFLAGAN 921 (965)
Q Consensus 852 ~~-~~~~i~~~~~~P~--~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~-------~i~i~~~~~~~~~~~~~~~l~~Gan 921 (965)
.. ....+. -.|=|. =||- ...++++..++.+..|..+-.. .++|.-+=.-...+...++-..++|
T Consensus 157 ~~~~~~~~v-IAYEPvWAIGTG----~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diD 231 (255)
T 3qst_A 157 PAGKWDDVV-IAYEPIWAIGTG----KVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAACPDVD 231 (255)
T ss_dssp CTTCGGGEE-EEECCGGGSSSS----CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHHHHHSTTCC
T ss_pred CHHHhCCEE-EEECCHHHhcCC----CCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHHHhcCCCCC
Confidence 10 011121 233442 2552 3579999999999999875311 1222221111124455566678999
Q ss_pred EEeeCCc
Q psy8199 922 SIFYGDK 928 (965)
Q Consensus 922 ~~~~g~~ 928 (965)
++++|.-
T Consensus 232 G~LVGgA 238 (255)
T 3qst_A 232 GFLVGGA 238 (255)
T ss_dssp EEEECGG
T ss_pred EEEeeHH
Confidence 9888874
No 484
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=50.32 E-value=1.2e+02 Score=31.17 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=51.5
Q ss_pred CcccHHHHHHHHHHHHhcCcEeEE---ecC---CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHH
Q psy8199 745 KDRDLDNIENMICEVKKIGLETCL---TLG---MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKN 818 (965)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~~~~i~~---~~~---~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~ 818 (965)
...+.+.+.++++.+.+.|+.--+ +.| .++.++-+++.+.-+ +....++..+ ...+.++.++..+.
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~-------~~~~gviaGv-g~~~t~~ai~la~~ 86 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVY-------DVTNKIIFQV-GGLNLDDAIRLAKL 86 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHH-------TTCSCEEEEC-CCSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHH-------HHcCCEEEec-CCCCHHHHHHHHHH
Confidence 346677777777777666554222 222 245555544444323 1100011111 13356777777777
Q ss_pred HHHcCCceeeeEEEec-C-CCHHHHHHHHHHHHhc
Q psy8199 819 VRNVGINICCGGIIGL-S-ESRDQRAELIFQLANL 851 (965)
Q Consensus 819 ~~~~Gi~v~~~~i~Gl-~-et~ed~~~~l~~l~~l 851 (965)
+.++|..-..-+.--+ . -+.+++.++.+.+.+-
T Consensus 87 A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a 121 (293)
T 1w3i_A 87 SKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV 121 (293)
T ss_dssp GGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhh
Confidence 7777764322111112 3 4778888888777764
No 485
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=50.06 E-value=1.6e+02 Score=31.06 Aligned_cols=119 Identities=8% Similarity=0.044 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-c-CcEeEEe----cCCCCHHHHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-I-GLETCLT----LGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~-~~~i~~~----~~~~~~e~l~~Lk~aG~~~ 788 (965)
.+++.+++.++.+.+.|++.|.|.+.. ....++.+.++++.+++ . .+.+.++ .|.-....+..+ ++|++.
T Consensus 166 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~---G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv-~aGa~~ 241 (337)
T 3ble_A 166 NSPDYVKSLVEHLSKEHIERIFLPDTL---GVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAI-RAGVKG 241 (337)
T ss_dssp HCHHHHHHHHHHHHTSCCSEEEEECTT---CCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHH-HTTCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---CCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHH-HhCCCE
Confidence 468999999999999999999996642 23446778888888876 3 4555553 355555555555 579999
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+...+-. +-+-.++-+.++.+..++.. .|+.+ |-..+.+.+..+++.++
T Consensus 242 vd~tv~G----lG~~aGN~~~E~lv~~L~~~--~g~~t--------gidl~~L~~~~~~v~~~ 290 (337)
T 3ble_A 242 LHASING----LGERAGNTPLEALVTTIHDK--SNSKT--------NINEIAITEASRLVEVF 290 (337)
T ss_dssp EEEBGGG----CSSTTCBCBHHHHHHHHHHH--SSCCC--------CCCGGGHHHHHHHHHHH
T ss_pred EEEeccc----ccccccchhHHHHHHHHHHh--cCCCC--------CcCHHHHHHHHHHHHHH
Confidence 9777644 11223344677777777654 24432 22444555555555553
No 486
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=49.93 E-value=1.3e+02 Score=37.77 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEE--e--cCCCCHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCL--T--LGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~--~--~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+++.+++.++++.+.|++.++|.+... ......+.++++.+++ .++.+.+ + .|.-....+ .-.+||++.+
T Consensus 689 ~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G---~~~P~~~~~lv~~l~~~~~~~i~~H~Hnt~G~a~An~l-aA~~aGa~~v 764 (1150)
T 3hbl_A 689 YTLEYYVKLAKELEREGFHILAIKDMAG---LLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYK-QAIDAGVDII 764 (1150)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEEETTC---CCCHHHHHHHHHHHHHHCCSCEEEEECBTTSCHHHHHH-HHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCeeeEcCccC---CCCHHHHHHHHHHHHHhcCCeEEEEeCCCCcHHHHHHH-HHHHhCCCEE
Confidence 5799999999999999999999976532 2346777888888876 3444444 3 244333344 4446899998
Q ss_pred eccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc------
Q psy8199 790 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN------ 862 (965)
Q Consensus 790 ~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~------ 862 (965)
...+.+ ... ...-+.+..+.+++ ..|+.+ |-..+.+.+..+++.++. ....++..
T Consensus 765 D~ai~GlG~~-----~gn~~lE~lv~~L~---~~g~~t--------gidl~~l~~~~~~~~~~~--~~y~~~~~~~~~~~ 826 (1150)
T 3hbl_A 765 DTAVASMSGL-----TSQPSANSLYYALN---GFPRHL--------RTDIEGMESLSHYWSTVR--TYYSDFESDIKSPN 826 (1150)
T ss_dssp EEBCGGGCSB-----TSCCBHHHHHHHTT---TSSCCB--------CSCHHHHHHHHHHHHHHH--GGGGGGCCSCCSCC
T ss_pred EEeccccCCC-----CCCccHHHHHHHHH---hcCCCc--------CccHHHHHHHHHHHHHHH--hhhccccCCCCCCc
Confidence 877744 222 22224555555443 335442 235555555555555543 11111110
Q ss_pred ----ccccCCCCCCC-------CCCC-CHHHHHHHHHHHHHHCCCC
Q psy8199 863 ----LVQIKGTPLYG-------SSIL-DPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 863 ----~~P~~gT~l~~-------~~~~-~~~~~~~~ia~~R~~lp~~ 896 (965)
....||-.+.+ .... --+++++.+...|..|...
T Consensus 827 ~~v~~~~~PGg~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~g~~ 872 (1150)
T 3hbl_A 827 TEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDI 872 (1150)
T ss_dssp TTHHHHCCCSSHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSC
T ss_pred cceEEeeCCCchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCC
Confidence 01223321111 1111 1378999999999999765
No 487
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=49.17 E-value=1.5e+02 Score=31.56 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=73.0
Q ss_pred HHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHH
Q psy8199 721 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPK 798 (965)
Q Consensus 721 ~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~ 798 (965)
.+.++.+.+.|+..+++.... . ..+.+.+.++.+++. ++.+... ...+.+..+.+.++|+|.+.++... +-.
T Consensus 107 ~e~a~~l~eaGad~I~ld~a~-G----~~~~~~~~i~~i~~~~~~~Vivg-~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~ 180 (361)
T 3khj_A 107 IERAKLLVEAGVDVIVLDSAH-G----HSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKVGIGPGSIC 180 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSC-C----SBHHHHHHHHHHHHHCCCEEEEE-EECSHHHHHHHHHTTCSEEEECSSCCTTC
T ss_pred HHHHHHHHHcCcCeEEEeCCC-C----CcHHHHHHHHHHHHhcCCcEEEc-cCCCHHHHHHHHHcCcCEEEEecCCCcCC
Confidence 445666778899988874432 1 125677888888764 6666541 2358999999999999999997544 211
Q ss_pred HHhcccC--CCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 799 LYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 799 ~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
.-+.+.. .-+++...+..+.+++.++++. ..=| .+.+|+.+.+. ++ .+.|.+.
T Consensus 181 ~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVI----A~GGI~~~~di~kala----~G--Ad~V~vG 236 (361)
T 3khj_A 181 TTRIVAGVGVPQITAIEKCSSVASKFGIPII----ADGGIRYSGDIGKALA----VG--ASSVMIG 236 (361)
T ss_dssp CHHHHTCBCCCHHHHHHHHHHHHHHHTCCEE----EESCCCSHHHHHHHHH----HT--CSEEEES
T ss_pred CcccccCCCCCcHHHHHHHHHHHhhcCCeEE----EECCCCCHHHHHHHHH----cC--CCEEEEC
Confidence 1111111 1123333444444455566542 2223 57787776654 35 5555444
No 488
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=49.05 E-value=26 Score=34.84 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=44.6
Q ss_pred HHHHHHCCCCEEEEeeccC-C---CCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 724 AQKAKSDGATRFCMGAAWR-E---LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~-~---~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
++.+.+.|+..+.+...+. + ....++ ++++.+++.++.+....|..+.+.+..+.++|++.+.+|
T Consensus 142 a~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~----~li~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 142 GISCHQKGIEFIGTTLSGYTGPITPVEPDL----AMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HHHHHHTTCSEEECTTTTSSSSCCCSSCCH----HHHHHHHTTTCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCCEEEecCccCCCCCcCCCCCH----HHHHHHHHcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3455678999885421111 1 111223 455555545788888999999999999999999999998
No 489
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=48.93 E-value=2.2e+02 Score=28.58 Aligned_cols=150 Identities=8% Similarity=0.142 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEe------cC--CCCHHH-HHH---
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLT------LG--MLNENQ-AYR--- 780 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~------~~--~~~~e~-l~~--- 780 (965)
.+.++++++++.+...|+.-+-+=-.... ...+.+++.+.+..+++. .+.+-++ .| ..+++. ++.
T Consensus 29 ~t~~e~l~~a~~~~~~~aD~vElR~D~l~-~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~ 107 (258)
T 4h3d_A 29 KNKKDIIKEAKELKDACLDIIEWRVDFFE-NVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKE 107 (258)
T ss_dssp SSHHHHHHHHHHHTTSSCSEEEEEGGGCT-TTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEeecccc-ccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHH
Confidence 57899999999998888776666433222 123578888888888762 3444332 22 234443 333
Q ss_pred HHHhC-CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC--CCHHHHHHHHHHHHhcCCCCCc
Q psy8199 781 LKKVG-LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS--ESRDQRAELIFQLANLNPYPES 857 (965)
Q Consensus 781 Lk~aG-~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~--et~ed~~~~l~~l~~l~~~~~~ 857 (965)
+.+.| ++++.+-+...++ ...+.++.+++.|.++-... --+. .+.+++.+.+..+.+++ .+.
T Consensus 108 ~~~~~~~d~iDvEl~~~~~------------~~~~l~~~a~~~~~kiI~S~-Hdf~~TP~~~el~~~~~~~~~~g--aDI 172 (258)
T 4h3d_A 108 ISNTGLVDLIDVELFMGDE------------VIDEVVNFAHKKEVKVIISN-HDFNKTPKKEEIVSRLCRMQELG--ADL 172 (258)
T ss_dssp HHHTTCCSEEEEEGGGCHH------------HHHHHHHHHHHTTCEEEEEE-EESSCCCCHHHHHHHHHHHHHTT--CSE
T ss_pred HHhcCCchhhHHhhhccHH------------HHHHHHHHHHhCCCEEEEEE-ecCCCCCCHHHHHHHHHHHHHhC--CCE
Confidence 33344 6777666544332 23445667788887653222 1122 44588999999999998 777
Q ss_pred eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 858 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 858 i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
+-+- .+ +.+..+.++++...+.+
T Consensus 173 vKia------~~------~~~~~D~l~Ll~~~~~~ 195 (258)
T 4h3d_A 173 PKIA------VM------PQNEKDVLVLLEATNEM 195 (258)
T ss_dssp EEEE------EC------CSSHHHHHHHHHHHHHH
T ss_pred EEEE------Ec------cCCHHHHHHHHHHHHHH
Confidence 6655 11 23667777777765543
No 490
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=48.89 E-value=27 Score=34.76 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=44.3
Q ss_pred HHHHHHCCCCEEEEeeccC-C---CCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 724 AQKAKSDGATRFCMGAAWR-E---LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~-~---~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
++.+.+.|+..+.+...+. + ....++ ++++++++.++.+....|..+.+.+..+.++|++.+.+|
T Consensus 142 a~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~----~~i~~l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 142 GLACQRLGADIIGTTMSGYTTPDTPEEPDL----PLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHHHHHTTCSEEECTTTTSSSSSCCSSCCH----HHHHHHHHTTCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCCEEEEcCccCCCCCCCCCCCH----HHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 4456678998875321111 1 112233 444445544788888999989999999999999999998
No 491
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=48.87 E-value=1.2e+02 Score=31.55 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCce
Q psy8199 810 ENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESV 858 (965)
Q Consensus 810 ~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i 858 (965)
...+++...+++.|+.+..|+.. .+-|.+++.+.+..+.+++ +..|
T Consensus 58 ~~t~~~a~~i~~~g~~~i~Hltc-~~~~~~~l~~~L~~~~~~G--I~ni 103 (310)
T 3apt_A 58 ERSVAWAQRIQSLGLNPLAHLTV-AGQSRKEVAEVLHRFVESG--VENL 103 (310)
T ss_dssp HHHHHHHHHHHHTTCCBCEEEEC-TTSCHHHHHHHHHHHHHTT--CCEE
T ss_pred hhHHHHHHHHHHhCCCeEEEeec-CCCCHHHHHHHHHHHHHCC--CCEE
Confidence 34566666666778877777764 4578888888888888877 5544
No 492
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=48.83 E-value=2e+02 Score=31.12 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------------------cccHHHHHHHHHHHHh-c--CcEeEE--ecC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK------------------DRDLDNIENMICEVKK-I--GLETCL--TLG 771 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------------------~~~~~~~~~~~~~i~~-~--~~~i~~--~~~ 771 (965)
.+++++.+.++++.+.|++.+-+--|..+.. ...++.-++.++++++ . ++.+.+ |.+
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~ 211 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHER 211 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCC
Confidence 3689999999999999999998866543210 0115666777888876 3 344444 333
Q ss_pred CCCHHH----HHHHHHhCCCeEeccCCC-CHHHHhcccC
Q psy8199 772 MLNENQ----AYRLKKVGLDYYNHNLDT-SPKLYGDIIS 805 (965)
Q Consensus 772 ~~~~e~----l~~Lk~aG~~~i~i~~es-~~~~~~~i~~ 805 (965)
. +.+. ++.|.+.|+..+.-.+.. +.+.+++++.
T Consensus 212 ~-~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~l~~ 249 (401)
T 3sbf_A 212 L-FPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRS 249 (401)
T ss_dssp S-CHHHHHHHHHHHGGGCCSCEECSSCTTCGGGHHHHHT
T ss_pred C-CHHHHHHHHHHHHhcCCCEEECCCChhHHHHHHHHHh
Confidence 3 4433 456667788888765554 4555555543
No 493
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=48.77 E-value=1.1e+02 Score=29.49 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEE--ecC---CCCHHHHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCL--TLG---MLNENQAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~--~~~---~~~~e~l~~Lk~aG~~~ 788 (965)
.+.++.++.+++... .+-.+-+..+.+ .... .+.++.+++. +..+.. ... ......++.+.++|++.
T Consensus 9 ~~l~~~~~~~~~~~~-~~~~~kv~~~~f--~~~G----~~~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~Gad~ 81 (208)
T 2czd_A 9 YEGERAIKIAKSVKD-YISMIKVNWPLI--LGSG----VDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADY 81 (208)
T ss_dssp CSHHHHHHHHHHHGG-GCSEEEEEHHHH--HHHC----TTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhcc-cccEEEecHHHH--HhhC----HHHHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhcCCCE
Confidence 346666666665533 244555555432 1111 1233444443 443322 222 11245577889999999
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CC-----HHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ES-----RDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et-----~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
+++..++.++. ++.+++.+ ...++.... +. .+.+...+....+.+ .+.+.+.
T Consensus 82 vtvh~~~g~~~----------------i~~~~~~~---gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G--~~G~~~~- 139 (208)
T 2czd_A 82 VIVHTFVGRDS----------------VMAVKELG---EIIMVVEMSHPGALEFINPLTDRFIEVANEIE--PFGVIAP- 139 (208)
T ss_dssp EEEESTTCHHH----------------HHHHHTTS---EEEEECCCCSGGGGTTTGGGHHHHHHHHHHHC--CSEEECC-
T ss_pred EEEeccCCHHH----------------HHHHHHhC---CcEEEEecCCcchhhHHHHHHHHHHHHHHHhC--CcEEEEC-
Confidence 99888775332 44555554 333333332 21 222334445555666 4444322
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhH
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPT-SRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDS 941 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~-~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~ 941 (965)
| | .++++ ...|..++. ..+ +..+-...+.+ -..++.+|||.+++|..++... ++.+..
T Consensus 140 --~---~--------~~~~i----~~lr~~~~~~~~i-v~gGI~~~g~~-~~~~~~aGad~vvvGr~I~~a~--dp~~~~ 198 (208)
T 2czd_A 140 --G---T--------RPERI----GYIRDRLKEGIKI-LAPGIGAQGGK-AKDAVKAGADYIIVGRAIYNAP--NPREAA 198 (208)
T ss_dssp --C---S--------STHHH----HHHHHHSCTTCEE-EECCCCSSTTH-HHHHHHHTCSEEEECHHHHTSS--SHHHHH
T ss_pred --C---C--------ChHHH----HHHHHhCCCCeEE-EECCCCCCCCC-HHHHHHcCCCEEEEChHHhcCC--CHHHHH
Confidence 1 1 22333 334555564 333 55554433223 3356889999999998664332 355555
Q ss_pred HHHH
Q psy8199 942 KLLK 945 (965)
Q Consensus 942 ~~~~ 945 (965)
+.++
T Consensus 199 ~~l~ 202 (208)
T 2czd_A 199 KAIY 202 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 494
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=48.75 E-value=74 Score=33.12 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=67.6
Q ss_pred CcccHHHHHHHHHHHHhcCcE---eEEecC---CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcc-c-CCCCHHHHHHHH
Q psy8199 745 KDRDLDNIENMICEVKKIGLE---TCLTLG---MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDI-I-STRDYENRLNTL 816 (965)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~~~~---i~~~~~---~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i-~-~~~~~~~~~~~i 816 (965)
...+.+.+.++++.+.+.|+. ++-+.| .++.++-+++.+.-++.+ ..+ ..-| . ...+.++.++..
T Consensus 30 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~------~gr-~pviaGvg~~~t~~ai~la 102 (307)
T 3s5o_A 30 AEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAM------PKN-RLLLAGSGCESTQATVEMT 102 (307)
T ss_dssp SCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTS------CTT-SEEEEECCCSSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHc------CCC-CcEEEecCCCCHHHHHHHH
Confidence 346677777777777665543 222222 245555444444322110 100 0111 1 123677778888
Q ss_pred HHHHHcCCceeeeEEEecC---CCHHHHHHHHHHHHhcCCCCCceeeccccccCC-CCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 817 KNVRNVGINICCGGIIGLS---ESRDQRAELIFQLANLNPYPESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 817 ~~~~~~Gi~v~~~~i~Gl~---et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g-T~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
+.+.++|..-..-+.--+. -|.+++.++.+.+.+-- .+|+..|.. |+ |- -..+++.+.++. +
T Consensus 103 ~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~----~lPiilYn~-P~~tg----~~l~~~~~~~La---~-- 168 (307)
T 3s5o_A 103 VSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS----PIPVVLYSV-PANTG----LDLPVDAVVTLS---Q-- 168 (307)
T ss_dssp HHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHC----SSCEEEEEC-HHHHS----CCCCHHHHHHHH---T--
T ss_pred HHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhc----CCCEEEEeC-CcccC----CCCCHHHHHHHh---c--
Confidence 8888888743221111111 47788888888777642 245443322 22 21 235667666553 2
Q ss_pred CCCCceecc
Q psy8199 893 MPTSRIRMS 901 (965)
Q Consensus 893 lp~~~i~i~ 901 (965)
+|++ +-++
T Consensus 169 ~pnI-vgiK 176 (307)
T 3s5o_A 169 HPNI-VGMX 176 (307)
T ss_dssp STTE-EEEE
T ss_pred CCCE-EEEE
Confidence 5765 4444
No 495
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=48.73 E-value=95 Score=32.98 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCEEEEeeccCCC-Cccc-----HHHHHHHHHHHHhc----CcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 723 AAQKAKSDGATRFCMGAAWREL-KDRD-----LDNIENMICEVKKI----GLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~-~~~~-----~~~~~~~~~~i~~~----~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.++...+.|+..+.+.....+. +... ..++.++++.+++. +..+....+.. ...++.|.+.|++.+++.
T Consensus 192 ~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~-~~~l~~l~~~g~d~i~~d 270 (354)
T 3cyv_A 192 YLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGG-GQWLEAMAETGCDALGLD 270 (354)
T ss_dssp HHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTT-TTTHHHHHTTSCSEEECC
T ss_pred HHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEECCCH-HHHHHHHHhcCCCEEEeC
Confidence 3344556799988776543221 1111 23334444444433 24333333332 567999999999999875
Q ss_pred CCCC
Q psy8199 793 LDTS 796 (965)
Q Consensus 793 ~es~ 796 (965)
-..+
T Consensus 271 ~~~d 274 (354)
T 3cyv_A 271 WTTD 274 (354)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 3334
No 496
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=48.70 E-value=94 Score=30.73 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+.+++.+.++...+.|+.-+--.+|..+.....++.+.-+ ++.-...+.+-.+.|..+.+....|.++|.+++-
T Consensus 144 t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm-~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~RiG 217 (231)
T 3ndo_A 144 GEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIM-ARTVGERLGVKASGGIRTAEQAAAMLDAGATRLG 217 (231)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCCHHHHHHH-HHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHH-HHHhCCCceEEEeCCCCCHHHHHHHHHhcchhcc
Confidence 7899999999999999998877766431233445543333 3333356778889999999999999999999763
No 497
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=48.57 E-value=89 Score=32.66 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred HHHHHHHHHHH-HCCCCEEEEeeccC-CC-CcccHHHHHHHHHHHHh-cCcEeEEe---cCCCCHHHHHHHHHhCCCe--
Q psy8199 718 ESVITAAQKAK-SDGATRFCMGAAWR-EL-KDRDLDNIENMICEVKK-IGLETCLT---LGMLNENQAYRLKKVGLDY-- 788 (965)
Q Consensus 718 eei~~~~~~~~-~~g~~~i~l~~g~~-~~-~~~~~~~~~~~~~~i~~-~~~~i~~~---~~~~~~e~l~~Lk~aG~~~-- 788 (965)
+++.+.+++.. +.|++-+.+.+.+. |. ...+.+...+.++.+.+ .++.+++. +-..+.++++.-.++|.+.
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~ 159 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENL 159 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCC
Confidence 45777777777 88999999964332 31 23456677777777765 45555543 1145788899988888652
Q ss_pred EeccCCC--CHHHHhccc---------CCCCHHHHHHHHHHHHHcCCc---eeeeEEEe-cCCCHHHHHHHHHHHHh
Q psy8199 789 YNHNLDT--SPKLYGDII---------STRDYENRLNTLKNVRNVGIN---ICCGGIIG-LSESRDQRAELIFQLAN 850 (965)
Q Consensus 789 i~i~~es--~~~~~~~i~---------~~~~~~~~~~~i~~~~~~Gi~---v~~~~i~G-l~et~ed~~~~l~~l~~ 850 (965)
+.-++.. .++...-.. ...+.+...+.++.+.++|++ +...-.+| +|.+.++-.++++.++.
T Consensus 160 lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 160 LLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp EEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred eEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 2222222 244433221 112345555666677788882 44444455 46777777777777775
No 498
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=47.93 E-value=69 Score=32.20 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHH
Q psy8199 749 LDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNV 819 (965)
Q Consensus 749 ~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~ 819 (965)
.+.+.++++++|+ ....+.+-.|..+.+.++.+.+ +.|.+.+|= ...+.+. .++.++..+.++.+
T Consensus 184 ~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGS----AiVk~i~-~~~~~~~~~~~~~~ 249 (252)
T 3tha_A 184 EAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGT----SIVKCFK-QGNLDIIMKDIEEI 249 (252)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECH----HHHHHTT-SSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECH----HHHHHHH-hcCHHHHHHHHHHH
Confidence 4567888888887 4778888999999999999877 589998882 3333333 34566666555544
No 499
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=47.91 E-value=1.6e+02 Score=29.52 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=52.9
Q ss_pred ccCCCHHHHHHHHHHHHHCCCCEEEEee--------------------cc---CCCCcccHHHHHHHHHHHHh-cCcEeE
Q psy8199 712 TKILSIESVITAAQKAKSDGATRFCMGA--------------------AW---RELKDRDLDNIENMICEVKK-IGLETC 767 (965)
Q Consensus 712 ~~~~~~eei~~~~~~~~~~g~~~i~l~~--------------------g~---~~~~~~~~~~~~~~~~~i~~-~~~~i~ 767 (965)
+..-++.+.++.++.+.+.|++-+..+. +. ....-.++ ++++.+++ .++.+.
T Consensus 116 ~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~----~lI~~I~e~~~vPVI 191 (265)
T 1wv2_A 116 TLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNP----YNLRIILEEAKVPVL 191 (265)
T ss_dssp TCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCH----HHHHHHHHHCSSCBE
T ss_pred ccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCCCcCCH----HHHHHHHhcCCCCEE
Confidence 3445788999999988888887764332 10 00011222 33444444 577788
Q ss_pred EecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 768 LTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 768 ~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
...|.-+.+.+....+.|++.+.++
T Consensus 192 ~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 192 VDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp EESCCCSHHHHHHHHHHTCSEEEES
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 8889999999999999999999888
No 500
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=47.28 E-value=2.5e+02 Score=35.14 Aligned_cols=119 Identities=10% Similarity=0.062 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEe--EEe--cCCCCHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLET--CLT--LGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i--~~~--~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+++.+++.++++.+.|++.++|.+-.. ......+.++++.+++ .++.+ .++ .|.-....+.. .+||++.+
T Consensus 706 ~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~~~~lv~~l~~~~~~~i~~H~Hnd~GlAvAn~laA-v~aGa~~v 781 (1165)
T 2qf7_A 706 YDLKYYTNLAVELEKAGAHIIAVKDMAG---LLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAA-VEAGVDAV 781 (1165)
T ss_dssp GCHHHHHHHHHHHHHTTCSEEEEEETTC---CCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHHHHHHHH-HHTTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccC---CcCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH-HHhCCCEE
Confidence 4689999999999999999999976532 2346777788888875 34444 443 35444444444 46899999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
...+.+ +.+-...-+.+..+.+++. .|+.+ +-..+.+.+..+++.++.
T Consensus 782 d~ti~G----lGe~~Gn~~le~vv~~L~~---~g~~t--------gidl~~L~~~s~~~~~~~ 829 (1165)
T 2qf7_A 782 DAAMDA----LSGNTSQPCLGSIVEALSG---SERDP--------GLDPAWIRRISFYWEAVR 829 (1165)
T ss_dssp EEBCGG----GCSBTSCCBHHHHHHHHTT---STTCC--------CCCHHHHHHHHHHHHHHH
T ss_pred Eecccc----cCCCccchhHHHHHHHHHh---cCCCc--------cccHHHHHHHHHHHHHHh
Confidence 877744 2222334456666666553 35442 335666777777766653
Done!