RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8199
(965 letters)
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 618 bits (1596), Expect = 0.0
Identities = 220/398 (55%), Positives = 293/398 (73%), Gaps = 1/398 (0%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G+RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P I+L+E+L+
Sbjct: 48 LYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLA 107
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+LT LGH F+ SDGASAVE+ALKMSFH W N+G +K++F+CL N YHGET+GAL VT
Sbjct: 108 ALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVT 167
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427
++ FK+ Y L+ +++ +PD+R G +A ++A A+ D+ L + KIAA+I+
Sbjct: 168 DVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIV 227
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EPLVQCA GM M+D YL+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A +WPDFL
Sbjct: 228 EPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFL 287
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
CLSKGI+GGYLPLSLV++ D I+ + Y + FLHSHSY+GNPLAC AALATL++F +
Sbjct: 288 CLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE 347
Query: 548 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
D++L R ++ ++ AL L HP++ + RQ+G I+AFDV + D + TFS++FF AA
Sbjct: 348 DDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVAL-DGDAARTFSRRFFEAA 406
Query: 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645
L+ ELLLRPIG TVYLMPPY+L+ +EI + T
Sbjct: 407 LERELLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATL 444
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 552 bits (1426), Expect = 0.0
Identities = 171/401 (42%), Positives = 252/401 (62%), Gaps = 6/401 (1%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
L G+ Y+D ISSWWVN+ GH++ IN A+K QL+KLEHVM LTH+P I+L+E+
Sbjct: 23 VYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHVMFGGLTHEPAIELAER 82
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L +T L F+ G+ AVEVALKM+ YW N+G K +F+ +N YHG+T GA++
Sbjct: 83 LVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKTRFLAFRNGYHGDTFGAMS 142
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
V ++ F ++ LL + I P ++ + LE LL+++ ++IAA
Sbjct: 143 VGDVGGFHALFEPLLFEVVFIPAPPCYR---CWDPDDCEAECLAALEALLEEHADEIAAF 199
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EPLVQ AGGM Y YL+ +RE+C+ Y + LIADEIA G GRTGK FACEHA + PD
Sbjct: 200 IVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKLFACEHAGVTPD 259
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
LCLSKG+TGGYLPL+ +TTD+IY + Y + F+H H+Y+GNPLAC AALA+L++
Sbjct: 260 ILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALASLDLL 319
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+++ L+++++ ++ L L HP + + R G I A +++ + K
Sbjct: 320 EEEDWLEQVARIEAQLRAGLAPLRDHPGVADVRVLGAIGAVELVRDVEPY---IGAKIQQ 376
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
L+ +LLRP+GN +YLMPPYI+ E++ +T+AI + +
Sbjct: 377 FFLERGVLLRPLGNVIYLMPPYIITDEELEKLTAAIKEAID 417
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 510 bits (1315), Expect = e-172
Identities = 196/395 (49%), Positives = 269/395 (68%), Gaps = 10/395 (2%)
Query: 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 310
F GKRYLDA+SSWWVN+FGH+N IN+ +K+Q+++LEHV+L+ +H+PVI+LSE+L +T
Sbjct: 44 FEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKIT 103
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
L CFY +G+SA+EVALKMSFHYW N+G KK+F+ L NSYHGETL A++V ++
Sbjct: 104 PPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVA 163
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
F E Y LL T + +PD +G S E +R +E L ++H++IAA+I+EPL
Sbjct: 164 LFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPL 223
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q AGGM MY +YLKL+RE C+ Y +HLI DEIAVG GRTG FACE A I PDFLCLS
Sbjct: 224 IQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS 283
Query: 491 KGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
K +TGGYLPL+ V+TTD +Y + Y Y + FLHSHSY+GNPLAC AALATL+IF +D
Sbjct: 284 KALTGGYLPLAAVLTTDTVYQAFYDDY-PTLRAFLHSHSYTGNPLACAAALATLDIFEQD 342
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF------SKK 602
N+++ +++ +A L HP + RQ GMI A + +++D + K
Sbjct: 343 NVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIE-MVQDKASKTPYPWQERRGLK 401
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ AL+ LLRP+G+ VY +PPY++ +I +
Sbjct: 402 VYQHALERGALLRPLGSVVYFLPPYVITPEQIDFL 436
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 501 bits (1293), Expect = e-170
Identities = 160/403 (39%), Positives = 242/403 (60%), Gaps = 13/403 (3%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G+ +DAISSWWV GH++ YI++A++ QL++L+HV+ + TH+P +L+++
Sbjct: 34 AYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQR 93
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L +LT L H F+ G+ AVEVALKM+ YW N+G + +F+ L+ YHG+T+G ++
Sbjct: 94 LVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMS 153
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
V + +YT LL + P + + + LE LL+K+ +IAA
Sbjct: 154 VGDRGGMHALYTPLLFEQVTAPFP----------PDGYEQATLDALEALLEKHAGEIAAF 203
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EPLVQ AGGM+ YD YL +R IC+ + + LI DEIA G GRTG FACE A + PD
Sbjct: 204 IVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPD 263
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+CLSKG+TGGYLPL+ + T +I+ + Y + F+HS SY+ NPLAC AA A+L++F
Sbjct: 264 IMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLF 323
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+ +L+R++ + + L P + + R G I A ++ E+
Sbjct: 324 EDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERD---GPALRA 380
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
AL+ +LLRP+GNT+YLMPPYI+ E+ +T AI + +EL
Sbjct: 381 FALERGVLLRPLGNTIYLMPPYIITAEELDRITDAIVEVADEL 423
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 471 bits (1215), Expect = e-158
Identities = 174/410 (42%), Positives = 245/410 (59%), Gaps = 12/410 (2%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G+RYLD +S W GH I +A+K QL+KL HVM TH+P I+L+EKL+
Sbjct: 38 LTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLA 97
Query: 308 SLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
L + L H F+ G+ AVE ALKM+ YW +G +KKFI +N YHG+TLGA++V
Sbjct: 98 ELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSV 157
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNH-NKIA 423
Y LL + + P + R G E A A +LE L+ ++ IA
Sbjct: 158 GGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAAD-ELEALILEHGPETIA 216
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
A I+EP+V AGGM++ YLK VREIC+ Y I LIADE+A G GRTGK FACEHA I
Sbjct: 217 AFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIV 276
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
PD LCL+KG+TGGYLPLS V+T+D+IY + + F+H H+YSGNPLAC AALA L+
Sbjct: 277 PDILCLAKGLTGGYLPLSAVLTSDRIYEAF-SDGDAGAFMHGHTYSGNPLACAAALANLD 335
Query: 544 IFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK- 601
I ++++L+R+++ + L + + HP + + R G+I A + ++ D F
Sbjct: 336 ILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIE-LVADKATKTPFEAR 394
Query: 602 ---KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ AAL+ LL+RP+G+ +YLMPP I+ + EI + A+ + +E
Sbjct: 395 VGARVRAAALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDET 444
>gnl|CDD|232973 TIGR00433, bioB, biotin synthase. Catalyzes the last step of the
biotin biosynthesis pathway. All members of the seed
alignment are in the immediate gene neighborhood of a
bioA gene [Biosynthesis of cofactors, prosthetic groups,
and carriers, Biotin].
Length = 296
Score = 454 bits (1170), Expect = e-153
Identities = 144/297 (48%), Positives = 196/297 (65%), Gaps = 5/297 (1%)
Query: 653 NLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITAT 712
L + P DLL AQ++ R +F N+++L +++ K+GGC EDC YC QS HY T I
Sbjct: 2 ELPDEPLLDLLAAAQRIRRHFF-GNKVDLCSIINAKSGGCPEDCKYCAQSAHYKTGIEKY 60
Query: 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG 771
+LS+E V+ AA+KAK+ GA+RFCM + R DR+ + + I E+K+ GLE C +LG
Sbjct: 61 PLLSVEEVLEAAKKAKAAGASRFCMVTSGRGPSDREFEKVLEAIREIKEETGLEVCASLG 120
Query: 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831
+L+E QA RLK G+D YNHNL+TSP Y +I +T Y++RL TLK R G+++C GGI
Sbjct: 121 LLSEEQAQRLKDAGVDRYNHNLETSPSYYPNICTTHTYDDRLETLKRARKAGLSVCSGGI 180
Query: 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891
IG+ E+ + R EL F LA L+ +SVPIN LV I GTPL + LDP E +RTIA+ R
Sbjct: 181 IGMGETMEDRIELAFALAELD--VDSVPINFLVPIPGTPLEDAPPLDPEECLRTIALFRF 238
Query: 892 TMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 948
MP + IR++ GR+ M QA CFLAGANSIF GD LTT + +D ++L+ LG
Sbjct: 239 IMPDAEIRLAGGRELMLRELQALCFLAGANSIFTGD-YLTTAGREAEEDLEMLEDLG 294
>gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional.
Length = 345
Score = 448 bits (1153), Expect = e-150
Identities = 177/317 (55%), Positives = 237/317 (74%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V LF P +LLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T
Sbjct: 9 LSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKT 68
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLETC
Sbjct: 69 GLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETC 128
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI +C
Sbjct: 129 MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRTIA
Sbjct: 189 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 248
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947
VARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +KL
Sbjct: 249 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 308
Query: 948 GINTRNIKIKMKNNIKQ 964
G+N + + +N +Q
Sbjct: 309 GLNPQQTAVLAGDNEQQ 325
>gnl|CDD|215219 PLN02389, PLN02389, biotin synthase.
Length = 379
Score = 410 bits (1056), Expect = e-135
Identities = 152/306 (49%), Positives = 207/306 (67%), Gaps = 2/306 (0%)
Query: 649 DEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE 708
DE+ +++ P DLLF +VHR D E++ LLSIKTGGC+EDC YCPQS+ Y+T
Sbjct: 50 DEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG 109
Query: 709 ITATKILSIESVITAAQKAKSDGATRFCMGAAWREL--KDRDLDNIENMICEVKKIGLET 766
+ A K++S + V+ AA++AK G+TRFCMGAAWR+ + + + I + E++ +G+E
Sbjct: 110 VKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEV 169
Query: 767 CLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 826
C TLGML + QA +LK+ GL YNHNLDTS + Y ++I+TR Y++RL TL+ VR GI++
Sbjct: 170 CCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISV 229
Query: 827 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 886
C GGIIGL E+ + R L+ LA L +PESVPIN LV +KGTPL ++ E +R I
Sbjct: 230 CSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMI 289
Query: 887 AVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946
A ARI MP + +R+SAGR QA CFLAGANSIF GDKLLTT N + D + K+
Sbjct: 290 ATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKE 349
Query: 947 LGINTR 952
LG+ +
Sbjct: 350 LGLIPK 355
>gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme
metabolism].
Length = 335
Score = 398 bits (1024), Expect = e-131
Identities = 168/305 (55%), Positives = 213/305 (69%), Gaps = 4/305 (1%)
Query: 647 ELDEVINLFNLPFND-LLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 705
LDE + L +LP D LLF A + HR +FD NE++L+ L+SIKTG C EDC YC QS Y
Sbjct: 15 TLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARY 74
Query: 706 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GL 764
T + A K++ +E ++ AA+KAK+ GATRFCMGAA R RD++ + I VK+ GL
Sbjct: 75 KTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGL 133
Query: 765 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 824
E C +LGML E QA +L G+D YNHNL+TSP+ Y +II+TR YE+RLNTL+NVR GI
Sbjct: 134 EVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGI 193
Query: 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 884
+C GGI+GL E+ + RAEL+ +LANL P+SVPIN L I GTPL + LDP EF++
Sbjct: 194 EVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDPFEFLK 252
Query: 885 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944
TIAVARI MP S IR+SAGR+ M QA F+AGANSIF GDK LTT + D +LL
Sbjct: 253 TIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELL 312
Query: 945 KKLGI 949
K LG+
Sbjct: 313 KDLGL 317
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 400 bits (1028), Expect = e-130
Identities = 170/398 (42%), Positives = 253/398 (63%), Gaps = 12/398 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L+ G+RYLDA+SSWW NLFGH+ I A+ Q +LE VML+ TH+P ++L+E+L
Sbjct: 58 LVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLL 117
Query: 308 SLTQYK-----LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++ + L FY +G++ VEVALKM+FHY++N+G + +FI L+N YHGET+G
Sbjct: 118 AIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIG 177
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
ALAV +I ++ +Y LL ++ +PD+ G SA + A A L+ L +++ +I
Sbjct: 178 ALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEI 237
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A+I+EP +QCAGGM M+ YL+ RE+C+ + LIADEIA G GRTG FACE A +
Sbjct: 238 CALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV 297
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD LCLSKG+TGG+LPLS V+ T ++Y++ + FLHSHSY+GNPLAC AALATL
Sbjct: 298 MPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATL 357
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSK- 601
+IF D+++ R ++T+ + HP + + RQ GM+ AF+ + + F
Sbjct: 358 DIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFE-LTRGGNKRTPFPPA 416
Query: 602 -----KFFVAALKNELLLRPIGNTVYLMPPYILNKNEI 634
+ AAL ++LRP+G+ +Y MPPY +++ ++
Sbjct: 417 ARVGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQL 454
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 373 bits (959), Expect = e-120
Identities = 136/405 (33%), Positives = 217/405 (53%), Gaps = 24/405 (5%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G RYLD +S V GH++ + +ALK QL KL H L ++P ++L+E
Sbjct: 28 AYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAEL 87
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L +LT L F+ + G AVE ALK++ Y +KK I + +YHG TLGAL+
Sbjct: 88 LLALTPEGLDKVFFVNSGTEAVEAALKLARAYT------GRKKIISFEGAYHGRTLGALS 141
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
+T + ++ + LL + P R A+++ LE L+++ ++AA+
Sbjct: 142 LTGSKKYRGGFGPLLPGVLHVPYPY-RYRPPAELADDLE-----ALEEALEEHPEEVAAV 195
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP +Q GG+I+ YLK +RE+C + I LIADE+ G GRTGK FA EH + PD
Sbjct: 196 IVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD 254
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ L KG+ GG LPL V+ ++I ++ LH ++ GNPLAC AALA LE+
Sbjct: 255 IVTLGKGLGGG-LPLGAVLGREEIMDAFPAGP----GLHGGTFGGNPLACAAALAVLEVL 309
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSK--- 601
++ +L+ ++ + + + L L ++ + R +G++ + +++D +
Sbjct: 310 EEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE-LVKDRATKPPDKELAA 368
Query: 602 KFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645
K AAL+ LLLRP G N + L+PP I+ + EI A+ +
Sbjct: 369 KIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 359 bits (923), Expect = e-114
Identities = 164/412 (39%), Positives = 250/412 (60%), Gaps = 10/412 (2%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
KL +G Y D +SS W+N+ GH +++A++ QLNK+ H L L + P I L+EKL
Sbjct: 49 KLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKL 108
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ L FY GA+AVE+A+KM+F YW NKG K++F+ L+N+YHG+T+GA++V
Sbjct: 109 IEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSV 168
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
I F ++Y+SLL + + P + GN EI + + +LE LLK+ H +IAAII
Sbjct: 169 GAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAII 228
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
+EPLVQ AGGMI YLK +R +C YN+ I DE+A G GRTGK FACEH + PD
Sbjct: 229 VEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDI 288
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHSHSYSGNPLACCAALATLEI 544
+ KG+TGGYLP+++ +TTD+IYN+ Y Y F H HSY+GNPL C ALA LE+
Sbjct: 289 MTAGKGLTGGYLPIAITVTTDEIYNAFYGDY-EEQKTFFHGHSYTGNPLGCAVALANLEL 347
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF--SKK 602
+ K N+++++++ + + L L + + RQ G++ + ++++ E E F +++
Sbjct: 348 YEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIE-LVKNKETKEPFEWTER 406
Query: 603 FFVAALKNE----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
V K +L RP+GNT+ MPP +E+ M +++ +++ E
Sbjct: 407 VGVQVCKRSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDVTE 458
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 316 bits (812), Expect = e-100
Identities = 124/335 (37%), Positives = 182/335 (54%), Gaps = 14/335 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+RYLD +S V GH + I +A+K Q +KL H T +P ++L+EKL+ LT
Sbjct: 15 GRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLAEKLAQLTPG 74
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L F+ + G+ A E A+K++ Y KG K K I +HG TLGAL+VT +
Sbjct: 75 GLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGALSVTGSSGY 134
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
K+ + L Y + PD +A E CA L ++ + + IAA+I+EP +Q
Sbjct: 135 KKGFGPSLPGVYFLPYPDLE------AAEEELACADEALRLIKAVHDDNIAAVIVEP-IQ 187
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
GG++ +L +REIC + + LIADE+ G GRTGK FACEH + PD + L+K
Sbjct: 188 GEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIMTLAKA 247
Query: 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
+TGG PLS V+ T +I + + H ++ GNPLAC AALA L+I +N+LQ
Sbjct: 248 LTGGL-PLSAVLATAEIMQAFH------PGSHGGTFGGNPLACAAALAVLDIIEDENLLQ 300
Query: 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFD 587
+ + K L +L P I + R KG++ A +
Sbjct: 301 NAQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIE 335
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 316 bits (811), Expect = 1e-98
Identities = 145/395 (36%), Positives = 225/395 (56%), Gaps = 15/395 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLV 96
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
++T L F G+ AVEVA+KM+ YW KG +++F+ L++ YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVC 155
Query: 368 NIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ S +Y L + P SR + + + I L+ + ++IAA+I
Sbjct: 156 DPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERD------IAPFARLMAAHRHEIAAVI 209
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
+EP+VQ AGGM +Y +LK VR++C+ I LIADEIA G GRTGK FACEHA I PD
Sbjct: 210 LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDI 269
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
LCL K +TGG + LS +TT ++ +I F+H ++ GNPLAC A A+L +
Sbjct: 270 LCLGKALTGGTMTLSATLTTREVAETI-SNGEAGCFMHGPTFMGNPLACAVANASLSLLE 328
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+ Q+++ ++ + L L P + + R G I V P + ++FFV
Sbjct: 329 SGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGV--VETTRPVNMAAL-QRFFV- 384
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
+ + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 385 --EQGVWIRPFGKLIYLMPPYIILPEQLQRLTAAV 417
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 290 bits (743), Expect = 9e-89
Identities = 135/396 (34%), Positives = 220/396 (55%), Gaps = 14/396 (3%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+R +D +SSWW L G+++ +N A NQL K+ H+M TH+P ++L++KL +
Sbjct: 43 GRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPP 102
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQS 371
L F+ G+ AVEVA+KM+ Y KG + + KF +++ YHG+T A++V + +
Sbjct: 103 SLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG 162
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
++ L Y + P +I G N+ AI L+ LL++ ++IAA+I+EP+V
Sbjct: 163 MHGLFNHSLPVQYFLPQP---SIKFGEEWND---EAIEPLQDLLEQKGDEIAALILEPVV 216
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q AGGM Y YL RE+C+ Y + LI DEIA G GRTGK FA EHA + PD +C+ K
Sbjct: 217 QGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGK 276
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
+TGGYL LS +TT+ I +I F+H ++ NPLAC A ++ + +
Sbjct: 277 ALTGGYLTLSATITTEAIAQTI-CSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQ 335
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
Q I + ++ + L + R G I + +++P + T +F +++
Sbjct: 336 QNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVE--MKEPVNMATLQPRF----VEHG 389
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+ +RP G VY+MPP+I++ +E+ +TS + + +
Sbjct: 390 IWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425
>gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated.
Length = 336
Score = 274 bits (703), Expect = 3e-84
Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 9/304 (2%)
Query: 649 DEVINLFNLP---FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 705
+E + L +P +LL A +V + + +++L +++ K+G C EDCGYC QS
Sbjct: 23 EEALALLEIPDDDLLELLAAAYEVRKHFCG-KKVKLNTIINAKSGLCPEDCGYCSQSAGS 81
Query: 706 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL 764
+ + L IE +I AA++A +GA FC+ A+ R +++D + + +K+ L
Sbjct: 82 SAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL 141
Query: 765 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 824
E C LG+L E QA RLK+ G+D YNHNL+TS + ++++T YE+R++T + V+ GI
Sbjct: 142 EICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGI 201
Query: 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 884
C GGIIG+ ES + R E F L L+ +S+PIN L I GTPL L PLE ++
Sbjct: 202 EPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLECLK 259
Query: 885 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944
TIA+ R+ P IR++ GR E+ + L GANS+ G+ L T T D ++
Sbjct: 260 TIAIFRLINPDKEIRIAGGR-EVNLRSLQPLGLGGANSVIVGNYLTTVGQPAT-ADLDMI 317
Query: 945 KKLG 948
+ LG
Sbjct: 318 EDLG 321
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 263 bits (674), Expect = 5e-79
Identities = 136/395 (34%), Positives = 213/395 (53%), Gaps = 15/395 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G +DA+SSWW GH + + A Q++ + HVM LTH+P IKL+ KL
Sbjct: 34 LTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLL 93
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+LT L H FY G+ +VEVA+KM+ Y +G + + + ++ YHG+T A++V
Sbjct: 94 NLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVC 153
Query: 368 NIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ + ++ L + P R G+S EI+ + LE+L+ +AAII
Sbjct: 154 DPEGGMHSLWKGTLPEQIFAPAPPVR----GSSPQEISE-YLRSLELLID---ETVAAII 205
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP+VQ AGGM +D ++ VR +C+ ++I LIADEIA G GRTG+ FA A + PD
Sbjct: 206 IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDI 265
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
+C+ K +TGG++ + + TDK+ I N +H ++ NPLAC A A+LEI
Sbjct: 266 MCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIE 325
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+++ + ++ L+ L P + + R G I V +E P +E ++ A
Sbjct: 326 TGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGV--VEMEQPVDMEEATQ----A 379
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
A+ + + LRP G VY+MPPYI +I + +A+
Sbjct: 380 AVDHGVWLRPFGRLVYVMPPYITTSEQIAQICAAL 414
>gnl|CDD|223638 COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific
[Translation, ribosomal structure and biogenesis].
Length = 289
Score = 257 bits (659), Expect = 1e-78
Identities = 107/241 (44%), Positives = 145/241 (60%), Gaps = 8/241 (3%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G + I P++ + I LDI+YED +++++NK AGLVVHP G+ GTL + L
Sbjct: 55 GDVVRIPLPEEPEEEKLVPED-IPLDILYEDEDLLVVNKPAGLVVHPGGGHHEGTLVNAL 113
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-I 123
L V R GIVHRLDK++SGL++VAK+ ++ L Q K V++ YLA+V G +
Sbjct: 114 L--RHCQDGVERPGIVHRLDKDTSGLLLVAKNREAARELSEQFKQRKVKKTYLALVRGHL 171
Query: 124 PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
P+ G I+A I R+P NR KM V K + KPA+T+YE L + +L+ +TGR
Sbjct: 172 PEDEGTIDAPIGRDPKNRKKMAVVKEGSGKPAITHYEVLE---RFGDNYTLVELKPETGR 228
Query: 184 THQIRVHMQWLGHGIVGDNLYG-KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
THQIRVH+ LGH IVGD LYG K S RQALHAYKL HP +L++ LP
Sbjct: 229 THQIRVHLAHLGHPIVGDPLYGGKDKSAGAGLKRQALHAYKLSFTHPLTGEELEFEAPLP 288
Query: 243 D 243
+
Sbjct: 289 E 289
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 259 bits (664), Expect = 3e-77
Identities = 130/420 (30%), Positives = 210/420 (50%), Gaps = 36/420 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G YLD +S V GH++ + +A+K QL KL H +L ++P ++L+EK
Sbjct: 48 AYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEK 107
Query: 306 LSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L++L L F+G+ GA AVE A+K++ Y + I ++HG TLGAL
Sbjct: 108 LTALAPGSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHGRTLGAL 161
Query: 365 AVTNIQSF-KEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA------IFDLEILLK 416
++T + K + L Y + P+ R +FDLE+
Sbjct: 162 SLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEV--- 218
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
++AAIIIEP +Q GG+I+ +LK +R++C + I LIADE+ G GRTGK FA
Sbjct: 219 -GPEEVAAIIIEP-IQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFA 276
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536
EH + PD + L+K + GG LPLS V+ +I + H ++ GNP+AC
Sbjct: 277 FEHFGVEPDIVTLAKSL-GGGLPLSAVVGRAEI-------MDWPPGGHGGTFGGNPVACA 328
Query: 537 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQ 595
AALA L++ ++N+L+R ++ + + L L HP I + R G++ + +++D +
Sbjct: 329 AALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVE-LVKDRDT 387
Query: 596 IE---TFSKKFFVAALKNELLL---RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
E + K A + LLL P GN + ++PP ++ E+ + + E
Sbjct: 388 KEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEAL 447
>gnl|CDD|161659 TIGR00005, rluA_subfam, pseudouridine synthase, RluA family. In E.
coli, RluD (SfhB) modifies uridine to pseudouridine at
23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504
and 2580, and RluA modifies U746 and tRNA U32. An
additional homolog from E. coli outside this family,
TruC (SP|Q46918), modifies uracil-65 in transfer RNAs to
pseudouridine [Protein synthesis, tRNA and rRNA base
modification].
Length = 299
Score = 246 bits (631), Expect = 2e-74
Identities = 105/231 (45%), Positives = 144/231 (62%), Gaps = 11/231 (4%)
Query: 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDK 85
I LDI++ED +II++NK +GLVVHP GN GT+ + LL P + V R GIVHRLD+
Sbjct: 69 DIPLDILFEDEDIIVINKPSGLVVHPGGGNPFGTVLNALLAHCPPIAGVERVGIVHRLDR 128
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRIKM 144
++SGLMVVAK+ + L QLK V ++Y+A+V G G ++A + R P+NR M
Sbjct: 129 DTSGLMVVAKTPLALRELQRQLKNRTVTKEYVALVHGQFDSGGGTVDAPLGRVPNNRGLM 188
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+T++ L + SL+ C L+TGRTHQIRVH+Q+LGH + GD LY
Sbjct: 189 AVHPSSEGKPAVTHFRVLE----RFGNASLVECELETGRTHQIRVHLQYLGHPLAGDPLY 244
Query: 205 GKK------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G K + L F+RQALHAY+LG IHP L++ LP D+ L+
Sbjct: 245 GNKPVPGNNLNGLLNFDRQALHAYELGFIHPATGEILEFEAPLPADLVLLL 295
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 246 bits (630), Expect = 6e-73
Identities = 123/409 (30%), Positives = 202/409 (49%), Gaps = 45/409 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
+ + G+ YLD + VN GH + + +ALK Q KL HV SNL ++P +L+E
Sbjct: 34 AYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHV--SNLFYNEPQAELAE 91
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL L+ F+ + GA A E ALK++ Y + K K I +NS+HG TLGAL
Sbjct: 92 KLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDP---EKSKIIAFENSFHGRTLGAL 147
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T +++ + LL P R++ D+E L AA
Sbjct: 148 SATGQPKYRKGFGPLL--------PGFRHVPFN------------DIEALEAAIDEDTAA 187
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP +Q GG+I +LK +RE+C+ + LI DE+ G GRTGK FA EH + P
Sbjct: 188 VIVEP-IQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEP 246
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L L+K + GG+ P+ ++ T++I + H ++ GNPLAC ALA LE+
Sbjct: 247 DILTLAKALGGGF-PIGAMLATEEI------ASAFTPGDHGSTFGGNPLACAVALAVLEV 299
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
++ +L+ + + + + + L L +P + R +G++ + +++P + +
Sbjct: 300 LLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIE--LKEPYRA-----RD 352
Query: 604 FVAALKNE--LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
V AL+ E L+L N + +PP ++ + EI A+ +
Sbjct: 353 IVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASA 401
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 244 bits (625), Expect = 8e-72
Identities = 131/413 (31%), Positives = 216/413 (52%), Gaps = 20/413 (4%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLT 310
GK+ LD + W VN+ GH+ + +A+ QL++LE + TH I+LS +L +
Sbjct: 41 GKKLLDGVGGLWNVNV-GHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMF 99
Query: 311 QYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
+ + F+ S G+ +VE ALK++ YW +G + KFI L+ YHG G +V
Sbjct: 100 APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGN 159
Query: 370 QSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR-CA-IFDLEILLKKNHNKIAAII 426
F+ Y LL + + TP RN E+AR CA + + EI + IAA I
Sbjct: 160 TVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDT-IAAFI 218
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP VQ AGG+I+ + + LVRE+C+ + I LIADE+ G GRTG +F + PD
Sbjct: 219 AEP-VQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDI 277
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLEIF 545
+CL+KGIT GY+PL M +I ++ + +H ++YSG+P+AC AALATL+I
Sbjct: 278 MCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIV 337
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE-------DPEQIE 597
++++ ++ + + L L + + R KG++ A D++ + DP +
Sbjct: 338 VREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSK-- 395
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
++ A +N +L+RP G + L PP ++ + ++ + A+ + +
Sbjct: 396 GYANAVADVARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAVPF 448
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 239 bits (612), Expect = 2e-70
Identities = 125/406 (30%), Positives = 206/406 (50%), Gaps = 44/406 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSE 304
++L GK YLD ++ VN GH + + +A++ Q KL H SNL + +P +L+E
Sbjct: 31 ARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHT--SNLYYIEPQEELAE 88
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL L+ + F+ + GA A E A+K++ Y + KG K + I +NS+HG TL L
Sbjct: 89 KLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATL 145
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T ++E + L+ + D+E L +K AA
Sbjct: 146 SATGQPKYQEGFEPLV--------EGFIYVPFN------------DIEALKAAITDKTAA 185
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+++EP +Q GG+ D YL+ +RE+C+ I LI DE+ G GRTGK FA +H I P
Sbjct: 186 VMLEP-IQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEP 244
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + L+KG+ GG +P+ V+ +K+ + + H ++ GNPLAC AALA +EI
Sbjct: 245 DIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGD------HGSTFGGNPLACAAALAVIEI 297
Query: 545 FNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
++ +L+ ++ + + L L+ +P I R G++ + IE ++ + +
Sbjct: 298 IEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLM----IGIE----LDRPAAEI 349
Query: 604 FVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
AL+ LL+ G N + L+PP I++K EI + + EL
Sbjct: 350 VKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395
>gnl|CDD|183020 PRK11180, rluD, 23S rRNA pseudouridine synthase D; Provisional.
Length = 325
Score = 226 bits (578), Expect = 1e-66
Identities = 102/237 (43%), Positives = 142/237 (59%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQKREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 201
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
KPA+T+Y E + H + +R L+TGRTHQIRVHM + H +VGD +
Sbjct: 202 HP--MGKPAVTHYRIMEHF------RVH-TRLRLRLETGRTHQIRVHMAHITHPLVGDQV 252
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ I F+RQALHA L L HP ++++W LP D+ +LI
Sbjct: 253 YGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPITGIEMEWHAPLPQDMVELI 309
>gnl|CDD|211346 cd02869, PseudoU_synth_RluCD_like, Pseudouridine synthase,
RsuA/RluD family. This group is comprised of
eukaryotic, bacterial and archeal proteins similar to
eight site specific Escherichia coli pseudouridine
synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and
TruA. Pseudouridine synthases catalyze the
isomerization of specific uridines in a n RNA molecule
to pseudouridines (5-ribosyluracil, psi) requiring no
cofactors. E. coli RluC for example makes psi955, 2504
and 2580 in 23S RNA. Some psi sites such as psi1917 in
23S RNA made by RluD are universally conserved. Other
psi sites occur in a more restricted fashion, for
example psi2819 in 21S mitochondrial ribosomal RNA made
by S. cerevisiae Pus5p is only found in mitochondrial
large subunit rRNAs from some other species and in gram
negative bacteria. The E. coli counterpart of this psi
residue is psi2580 in 23S rRNA. psi2604in 23S RNA made
by RluF has only been detected in E.coli.
Length = 185
Score = 216 bits (552), Expect = 5e-65
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 4/189 (2%)
Query: 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSI 97
++++NK AGL VHP G+L+GTL + LL++ L R G+VHRLDK++SGL++VAK+
Sbjct: 1 LLVVNKPAGLPVHPGPGHLTGTLVNALLKLLLLLGEEFRPGLVHRLDKDTSGLLLVAKNK 60
Query: 98 KSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALT 157
K+ L Q K V++ YLA+V G P + A + + + V + + KPA+T
Sbjct: 61 KAAAKLSKQFKERKVKKTYLALVDGKPPEDEGTIDAPLGRKKRKKRARVVVSEDGKPAIT 120
Query: 158 YYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQ 217
+Y+ L +++L+ L+TGRTHQIRVH+ +GH IVGD YG K S S R
Sbjct: 121 HYKVLERF----GNVTLVELQLETGRTHQIRVHLASIGHPIVGDPKYGGKASDSPGLKRL 176
Query: 218 ALHAYKLGL 226
ALHAY+L
Sbjct: 177 ALHAYRLSF 185
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 223 bits (569), Expect = 9e-65
Identities = 129/391 (32%), Positives = 197/391 (50%), Gaps = 43/391 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ 311
GK YLD ++ VN GH++ + +ALK QL KL HV SNL +P +L+EKL +
Sbjct: 26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV--SNLYYTEPQEELAEKLVEHS- 82
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
F+ + GA A E ALK++ Y +KG KKK I +NS+HG T+GAL+ T
Sbjct: 83 -GADRVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPK 140
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
+++ + L+ P D+E L K ++ AA+I+EP +
Sbjct: 141 YQKGFEPLV--------PGFSYAPYN------------DIESLKKAIDDETAAVIVEP-I 179
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q GG+ + +LK +REIC + + LI DE+ G GRTGKFFA EH I PD + L+K
Sbjct: 180 QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAK 239
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
G+ GG +P+ + +++ + + H ++ GNPLAC AALA LE+ K+ +L
Sbjct: 240 GLGGG-VPIGATLAKEEVAEAFTPGD------HGSTFGGNPLACAAALAVLEVIEKERLL 292
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
+ + + + L L + R KG++ + +E K AL+
Sbjct: 293 ENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIE--------LEAPCKDIVKKALEKG 344
Query: 612 LLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
LL+ G + +PP I+ K EI SA+
Sbjct: 345 LLVNCAGPKVLRFLPPLIITKEEIDEAVSAL 375
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 224 bits (572), Expect = 2e-64
Identities = 125/406 (30%), Positives = 205/406 (50%), Gaps = 22/406 (5%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
LI +GKRYLDA V+ GHS+ + A+ Q+++L + S T +P L+++L
Sbjct: 24 LIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLV 83
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ L H ++ S G+ AVE ALK++ Y+ G ++ FI + SYHG TLGALA+
Sbjct: 84 AAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIG 143
Query: 368 NIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEI-LLKKNHNKIAA 424
+E + LL + + ++ P R G S + +LE +L+ + +AA
Sbjct: 144 GNAWRREPFAPLLIEAHHVS-PCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAA 202
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+ E +V G + Y K +RE+C+ Y + LI DE+ G GRTG FACE + P
Sbjct: 203 FVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAP 262
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + ++KG+ GY P+ V+ +D+IY++I + F H H+Y G+ AC AALA +
Sbjct: 263 DLVTIAKGLGAGYQPIGAVLASDRIYDAI--ADGSGFFQHGHTYLGHATACAAALAVQRV 320
Query: 545 FNKDNILQRISQDMKKITKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
+D +L + +++ L L HP + + R +G+ + ++ D F
Sbjct: 321 IAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVE-LVADRATKAPFDPAL 379
Query: 604 FVAA-LKNE-----LLLRPIGNT--------VYLMPPYILNKNEIQ 635
+ A +K E L++ P+G T V L PP+I+ +I
Sbjct: 380 KLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQID 425
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 222 bits (567), Expect = 1e-63
Identities = 124/436 (28%), Positives = 207/436 (47%), Gaps = 33/436 (7%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
+G +Y D S GH I A+K Q ++ V S T +P KL++KLS L+
Sbjct: 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L F+ + G+ A E A+K++ ++ +G K K + SYHG T+GAL+++
Sbjct: 89 GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPL 148
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPL 430
++ + SLL I+ P +LE +++ IAA I EP+
Sbjct: 149 RRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPI 208
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+ AG ++ Y K+++EIC++Y+I IADE+ G GRTG FA EH + PD + L
Sbjct: 209 IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLG 268
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG+ GY P++ + +D++ I + H+ S NPL+ ALA LE K N+
Sbjct: 269 KGLGAGYTPIAATVVSDRVMEPI--LRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNL 326
Query: 551 LQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL- 608
++ ++ + + K L + II + R KG++ + + D + + FSK VA+
Sbjct: 327 PEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVE-FVADKKTKQPFSKSQAVASEL 385
Query: 609 -----KNELLLRPI--------GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVINLF 655
KN LLL P G+ V + PP + T++ELDE++++F
Sbjct: 386 ISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTI--------------TYSELDELLSIF 431
Query: 656 NLPFNDLLFRAQKVHR 671
+++ +
Sbjct: 432 AKSVEEMMQKGGHSIA 447
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 218 bits (557), Expect = 6e-63
Identities = 121/392 (30%), Positives = 186/392 (47%), Gaps = 46/392 (11%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKL 306
LI G+RYLD S VN GH++ ++ +ALK Q KL HV SNL P +L+E+L
Sbjct: 25 LIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHV--SNLYRIPEQERLAERL 82
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ F+ + GA AVE A+K + Y Y KG + + I + ++HG TL +A
Sbjct: 83 VENSFADK--VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA 140
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ + E + L+ P + G D+E L AAI+
Sbjct: 141 GGQEKYLEGFGPLV--------PGFDQVPFG------------DIEALKAAITPNTAAIL 180
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP +Q GG+ +LK +R++C+ + LI DE+ G GRTGK FA E A + PD
Sbjct: 181 IEP-IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI 239
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
+ ++KGI GG+ PL + T++ + H +Y GNPLA A L++
Sbjct: 240 MAVAKGIGGGF-PLGACLATEEAAKG------MTPGTHGSTYGGNPLAMAVGNAVLDVIL 292
Query: 547 KDNILQRISQDMKKITKALTSLI-THPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
L + + + + L L+ P +I R KG++ ++ + +
Sbjct: 293 APGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRD---------L 343
Query: 605 VAALKNELLL-RPIG-NTVYLMPPYILNKNEI 634
V AL++E LL G N V L+PP I+ + EI
Sbjct: 344 VQALRDEGLLTVGAGDNVVRLLPPLIITEEEI 375
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 213 bits (545), Expect = 1e-60
Identities = 125/421 (29%), Positives = 206/421 (48%), Gaps = 29/421 (6%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSL 309
+GKRY++ ++ W G S + +A Q+ KL H S+ +H PVI L+EKL ++
Sbjct: 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYH-TFSHKSHGPVIDLAEKLVAM 104
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-- 367
+ F+ + G+ A + +K+ ++Y G KKK I Q YHG T+ + ++T
Sbjct: 105 APVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGL 164
Query: 368 --NIQSFKEIYTSLLNKTYIITT--PDS-RNINKGNSANEIA-RCAIFDLEIL-LKKNHN 420
N +SF L I+ T P R G S A R A +LE L L + +
Sbjct: 165 PNNHRSFD------LPLDRILHTGCPHYYRFGLPGESEEAFATRLAN-ELEALILAEGPD 217
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
IAA I EP V AGG+I+ Y + ++ + Y+I L+ADE+ G GRTG F CE
Sbjct: 218 TIAAFIGEP-VMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETF 276
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCAAL 539
I PD L +SK ++ Y PLS V+ +K+Y+ I ++ I F H + SG+P+A AL
Sbjct: 277 GIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVAL 336
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
L I + +++ ++ ++ L +L HP + R G+I A + ++ D F
Sbjct: 337 ENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVE-LVADKATKTPF 395
Query: 600 SK------KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL-DEVI 652
+ AA ++ ++ R +G+T+ PP I+ ++ M + +++ V
Sbjct: 396 EPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDVAAWVA 455
Query: 653 N 653
Sbjct: 456 A 456
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 207 bits (528), Expect = 3e-58
Identities = 119/411 (28%), Positives = 194/411 (47%), Gaps = 47/411 (11%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNL----THKPVIKLSEKLS 307
G + LD ++ W VN+ G+ + A Q+ +L + N TH P I+L+ KL+
Sbjct: 49 GNKILDGMAGLWCVNV-GYGRKELADAAARQMRELPYY---NTFFKTTHPPAIELAAKLA 104
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ H F+ + G+ A + L+M HYW KG KK I +N YHG T+
Sbjct: 105 EVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAG---- 160
Query: 368 NIQSFKEIYTSLLNKTYI-----ITTPDSRNIN--------KGNSANEIARCAIFDLEI- 413
SL Y+ + P +I+ + E A LE
Sbjct: 161 ---------ASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAK 211
Query: 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+L+ + +AA I EP +Q AGG+I+ + Y ++ IC Y+I L+ADE+ G GRTG+
Sbjct: 212 ILELGADNVAAFIGEP-IQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE 270
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533
+F +H I PD + ++KG+T GY+P+ V D++ + + F H +YSG+P+
Sbjct: 271 WFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTYSGHPV 328
Query: 534 ACCAALATLEIFNKDNILQRISQDMKK-ITKALTSLITHPKIINFRQKGMIWAFDVIIED 592
A ALA L I + I++R+ D + K L L HP + R G++ A +++D
Sbjct: 329 AAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAI-ELVKD 387
Query: 593 PEQIETFSKKFFVAAL------KNELLLRPIGNTVYLMPPYILNKNEIQHM 637
E F V + N L++R +G+ + + PP ++ EI +
Sbjct: 388 KATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDEL 438
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 204 bits (521), Expect = 1e-57
Identities = 111/416 (26%), Positives = 209/416 (50%), Gaps = 27/416 (6%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
T G+R LD + W GH I +A++ Q +L++ + H +L+ +++
Sbjct: 40 YTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIA 99
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ L H F+ + G+ +V+ ALK++ Y +G ++ + I + YHG G ++V
Sbjct: 100 EIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVG 159
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINK-----------GNSANEIARCAIFDLEILLK 416
I ++ + +LL + P + ++ + A+E+ R ++
Sbjct: 160 GIVPNRKAFGALL--PGVDHLPHTLDLARNAFSKGQPEHGAELADELER-------LVTL 210
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
+ + IAA+I+EP V + G+++ YL+ +REIC+ + I LI DE+ G GR G FA
Sbjct: 211 HDASTIAAVIVEP-VAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFA 269
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLAC 535
++ + PD L +KG+T G +P+ V + +I+++ I F H ++YSG+PLAC
Sbjct: 270 AQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLAC 329
Query: 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ 595
AALATL+++ ++ +L R ++ AL SL P +I+ R G++ A ++ P
Sbjct: 330 AAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVEL---APRD 386
Query: 596 IETFSKKF--FVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
+ + + F+ + L++R G+ + L PP I+ + +I + + Q E
Sbjct: 387 GKPGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKETI 442
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 199 bits (509), Expect = 1e-55
Identities = 129/417 (30%), Positives = 202/417 (48%), Gaps = 31/417 (7%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G RYLD +S W VN+ G+ + +A QL L + L+ +H+P IKL+EKL+
Sbjct: 46 GNRYLDGMSGLWCVNV-GYGRKELAEAAYEQLKTLSYFPLTQ-SHEPAIKLAEKLNEW-- 101
Query: 312 YKLGH---CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
LG F+ + G+ A E A K++ Y KG ++ KFI +YHG ++GALA T
Sbjct: 102 --LGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATG 159
Query: 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIFDLEILLKKNHNKIAAIII 427
K Y L + PD + S + C ++ + IAA+I+
Sbjct: 160 QAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIM 219
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EP++ GG++M Y+K V+EIC + LI+DE+ G GRTGK F + + PD +
Sbjct: 220 EPIIT-GGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDII 278
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
++KGIT YLPLS +IY + K F H +++ GNP AC AL LEI
Sbjct: 279 TMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN 338
Query: 548 DNILQRISQDMKKITKAL-TSLITHPKIINFRQKGMIWAF----DVIIEDPEQIETFSKK 602
+N+++R +Q + + + L L HP + + R KG++ D ++P + +
Sbjct: 339 ENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVAS- 397
Query: 603 FFVAALKNELLLRPIG----------NTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
VAA K + L+ IG N + L PP +++ EI + + +
Sbjct: 398 -VVAACKEKGLI--IGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK 451
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 199 bits (507), Expect = 1e-55
Identities = 127/404 (31%), Positives = 198/404 (49%), Gaps = 21/404 (5%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GK YLD S V GH + + +A+K Q +KL H + ++ ++KL+E+L+ +T
Sbjct: 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITP 100
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L F+ + GA A+E ALK++ H I +HG TLGAL+VT +S
Sbjct: 101 GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYI------ISFTGCFHGRTLGALSVTTSKS 154
Query: 372 -FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIE 428
+++ Y LL Y P KG + DLE L K ++AA+IIE
Sbjct: 155 KYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIE 214
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P V GG I+ +LK +REIC+ + I LI DE+ G GRTG++FA + + PD +
Sbjct: 215 P-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMT 273
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
++KGI G LPLS V+ + ++ + H ++ GNP+AC AALATLE+ ++
Sbjct: 274 IAKGIASG-LPLSAVVASKELMEQ------WPLGSHGTTFGGNPVACAAALATLEVIKEE 326
Query: 549 NILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
+L ++ + L L HP I + R G++ +++ D E +K
Sbjct: 327 KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKC 386
Query: 608 LKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
L+ LL GN + ++PP + K EI + + E
Sbjct: 387 LEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 197 bits (503), Expect = 8e-55
Identities = 122/415 (29%), Positives = 209/415 (50%), Gaps = 24/415 (5%)
Query: 252 SGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVM-LSNLTHKPVIKLSEKLSSL 309
G+RYLD I W VN+ G+ + A+ +Q +L + ++T+ P +L+ KL+ L
Sbjct: 49 DGRRYLDGIGGMWCVNV-GYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAEL 107
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
L H F + G++AV+ AL+ +Y+ +G KK I ++YHG T ++T
Sbjct: 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGK 167
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI----FDLEILLKKNHNKIAAI 425
+ + + + + +++P+ G S E A C F+ +IL + IAA
Sbjct: 168 AADRTEFDYASDLVHHLSSPNPYRRPAGMS--EAAFCDFLVDEFEDKIL-SLGADNIAAF 224
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE-HAEIWP 484
I EP + +GG+I+ Y +REIC Y+I I+DE+ G GR G FFA E I P
Sbjct: 225 IAEP-ILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQP 283
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNI-NIFLHSHSYSGNPLACCAALATLE 543
D + +KG+T GY PL V+ ++++ + I N N+F H +YSG+P+AC AAL +E
Sbjct: 284 DIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIE 343
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED------PEQIE 597
I ++ + + + + + L SL P + + R ++ + + + PE I
Sbjct: 344 IMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDI- 402
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS----AIFQTFNEL 648
++ + LL+RP+ + L PP I+ + +I + + AI +T +EL
Sbjct: 403 AIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEETADEL 457
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 196 bits (500), Expect = 1e-54
Identities = 120/420 (28%), Positives = 212/420 (50%), Gaps = 35/420 (8%)
Query: 248 LITFSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
G++ LD + W N GH I +A+ Q L++ + H +L+E+L
Sbjct: 43 YTDADGRKILDGTAGLWCCNA-GHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERL 101
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ L L H F+ + G+ +V+ ALK++ Y +G + + I + YHG G ++V
Sbjct: 102 AELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISV 161
Query: 367 TNIQSFKEIYTSLLN------KTYIITTPDSRN-INKGNSAN--EIARCAIFDLEILLKK 417
I + ++++ LL T + N +KG + E+A DLE L+
Sbjct: 162 GGIVNNRKMFGGLLPGVDHLPHTLDL----PENAFSKGQPEHGAELAD----DLERLVA- 212
Query: 418 NH--NKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
H + IAA+I+EP+ AG G+++ YL+ +REIC+ + I LI DE+ G GR G
Sbjct: 213 LHDASTIAAVIVEPM---AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY--KNNINIFLHSHSYSGN 531
FA E + PD + +KG+T G +P+ V+ +D+IY++ + I F H ++YS +
Sbjct: 270 AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFF-HGYTYSAH 328
Query: 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 591
P+AC A LATL+I+ ++++ +R ++ A+ SL P +I+ R G++ ++
Sbjct: 329 PVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIEL--- 385
Query: 592 DPEQIETFSKKF--FVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
P ++ + F+ + LL+R G+T+ L PP I+ K +I + A+ +
Sbjct: 386 APRPGAPGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAVA 445
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 195 bits (498), Expect = 3e-54
Identities = 118/411 (28%), Positives = 198/411 (48%), Gaps = 22/411 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
GKRYLD ++ +V GH + + +A Q L L + H P I+L+E+L++L
Sbjct: 51 GKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPG 110
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L F+ + G+ AVE A K++ Y+ G K K I +YHG T GALA+T + +F
Sbjct: 111 DLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF 170
Query: 373 KEIYTSLLNKTY-IITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPL 430
K + L+ + + T R G+ R A +E + + + +AA+ +EP
Sbjct: 171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEP- 229
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
VQ AGG Y + VREIC+ Y++ L++DE+ GR G+ F CE PD + +
Sbjct: 230 VQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCA 289
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KGIT GY PL ++ +D+++ + +FLH +++ G+P++ ALA L+IF ++ +
Sbjct: 290 KGITSGYSPLGAMIASDRLFEPFL--DGPTMFLHGYTFGGHPVSAAVALANLDIFEREGL 347
Query: 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE-------DPEQIETFSKKF 603
L + + L L+ P + + R G + +++ + ++ E + F
Sbjct: 348 LDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGF 407
Query: 604 FVAAL-KNELLLR------PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
AL + L R P+ V L PP I + E + + E
Sbjct: 408 LSPALFEAGLYCRADDRGDPV---VQLAPPLISGQEEFDEIEQILRSVLTE 455
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 192 bits (489), Expect = 5e-53
Identities = 125/413 (30%), Positives = 210/413 (50%), Gaps = 44/413 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL---EHVMLSNLTHKPVIKL 302
+ L+ G+ ++D + + + GH N + A++NQL K +L L L
Sbjct: 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAM----L 129
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++ L++LT KL + F+ + G +VE ALK++ Y +G K FI ++HG++LG
Sbjct: 130 AKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIATSGAFHGKSLG 186
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
AL+ T +F++ + LL P R++ GN E R A+ + KK + +
Sbjct: 187 ALSATAKSTFRKPFMPLL--------PGFRHVPFGNI--EAMRTALSEC----KKTGDDV 232
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA+I+EP +Q GG+I+ YL VR++C+ + LI DE+ G GRTGK FACEH +
Sbjct: 233 AAVILEP-IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV 291
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD LCL+K + GG +P+ + T+++++ ++ N FLH+ ++ GNPLAC AALAT+
Sbjct: 292 QPDILCLAKALGGGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATI 347
Query: 543 EIFNKDNILQRISQDMKKITKALTSLI-THPKIIN-FRQKGMIWAFDVIIEDPEQIETFS 600
+ + N+ + Q + L +P ++ R KGM+ A + + D E F+
Sbjct: 348 NVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFV--DNEIGYNFA 405
Query: 601 KKFF-----VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ F VA N T+ + PP L + + + A + +
Sbjct: 406 SEMFRQRVLVAGTLNN------AKTIRIEPPLTLTIEQCEQVLKAARKALAAM 452
>gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional.
Length = 279
Score = 185 bits (471), Expect = 1e-52
Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 6/276 (2%)
Query: 677 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFC 736
EI L + +I +G C EDC YC QS HY +I K IE ++ A+ AK++GA FC
Sbjct: 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFC 61
Query: 737 MGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--GMLNENQAYRLKKVGLDYYNHNLD 794
+ + R L D+ L+ + VKK L G + Q LKK G+ YNHNL+
Sbjct: 62 LVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121
Query: 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPY 854
TS + + I +T +E R T +N + G+ +C GGI GL ES + R + LA+L+
Sbjct: 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLS-- 179
Query: 855 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAF 914
P S PIN + PL + L E + + +A+ +P +R+ ++ GR+ + Q
Sbjct: 180 PHSTPINFFIPNPALPLKAPT-LSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238
Query: 915 CFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
F AGAN+I GD LTT D + LK LG
Sbjct: 239 IFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFE 273
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 186 bits (474), Expect = 1e-51
Identities = 112/404 (27%), Positives = 173/404 (42%), Gaps = 41/404 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK-LSSLTQ 311
GK+Y D +S++ GH + I AL NQ KL S + V+ L+EK ++ L
Sbjct: 30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL--TSRAFYNDVLGLAEKYITDLFG 87
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
Y + GA A E ALK + + Y + N+ K I ++ G T+GA + +
Sbjct: 88 YD--KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTD 145
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ + ++ D + LE LL+ +AA I+EP
Sbjct: 146 PKCYNNFGPFVPGFELVDYND-----------------VEALEKLLQDP--NVAAFIVEP 186
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+Q G+I+ D YLK V E+C YN+ LI DEI G GRTGK A +H + PD + L
Sbjct: 187 -IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLL 245
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549
K ++GG P+S V+ D + I H +Y GNPLAC A+ LE+ ++
Sbjct: 246 GKALSGGLYPISAVLANDDVMLV------IKPGEHGSTYGGNPLACAVAVEALEVLKEEK 299
Query: 550 ILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL 608
+ + + + L L+ + R KG++ A D L
Sbjct: 300 LAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVF---DHSDGVNAWD--LCLKL 354
Query: 609 K-NELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
K N LL +P N + PP ++ K ++ I + D
Sbjct: 355 KENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFDS 398
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 186 bits (474), Expect = 2e-51
Identities = 121/406 (29%), Positives = 204/406 (50%), Gaps = 41/406 (10%)
Query: 235 LKWRINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 294
++W+ + LI G ++D + + + GH N + A++NQL K + + L
Sbjct: 59 VEWQAGGLN---TLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK-QPLHSQEL 114
Query: 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 354
L++ L++LT KL + F+ + G +VE ALK++ Y +G K FI
Sbjct: 115 LDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIAASG 171
Query: 355 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA---NEIARCAIFDL 411
++HG++LGAL+ T +F++ + LL P ++ G+ + C
Sbjct: 172 AFHGKSLGALSATAKPAFRKPFMPLL--------PGFHHVAFGDIEAMLKALNEC----- 218
Query: 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 471
KK + +AAII+EP +Q GG+I+ YL VR +C+ + LI DE+ G GRT
Sbjct: 219 ----KKTGDDVAAIILEP-IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT 273
Query: 472 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 531
GK FACEH + PD LCL+K + GG +P+ + T+ +++ ++ N FLH+ ++ GN
Sbjct: 274 GKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFD----NPFLHTTTFGGN 329
Query: 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPK-IINFRQKGMIWAFDVI 589
PLAC AALAT+ + N+ + + + L +P II R KG++ A +
Sbjct: 330 PLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFR 389
Query: 590 IEDPEQIETFSKKFFVAALKNELLLRPIGN--TVYLMPPYILNKNE 633
D E F+K+ F +N L+ + N ++ + PP + +
Sbjct: 390 --DNEIGYAFAKELF---QQNILVAGTLNNAKSIRIEPPLTITIEQ 430
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 185 bits (471), Expect = 3e-51
Identities = 103/392 (26%), Positives = 181/392 (46%), Gaps = 48/392 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ 311
GK YLD + VN GH++ + +A+ QL L HV SNL +P I L+E+L L
Sbjct: 42 GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHV--SNLFATEPQIALAERLVELLG 99
Query: 312 Y-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ G F+ + GA A E A K++ + K + + +HG T+GALA+T
Sbjct: 100 APEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQP 152
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+ + + L ++ G D++ L + AA+ +EP
Sbjct: 153 AKRAPFEPLP--------GGVEHVPYG------------DVDALAAAVDDDTAAVFLEP- 191
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q G++ + YL REI + + L+ DE+ G GRTG +FA +H + PD + L+
Sbjct: 192 IQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLA 251
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG+ GG LP+ + + LH ++ GNP+AC AALA L+ + +
Sbjct: 252 KGLGGG-LPIGACLAFGP-AADLLTPG-----LHGSTFGGNPVACAAALAVLDTIASEGL 304
Query: 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610
L+ + +++ + +L HP + + R +G++ + + +E AA +
Sbjct: 305 LENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAPVAKAVEA-------AAREA 356
Query: 611 ELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
L+ + + + L PP I+ ++ +A+
Sbjct: 357 GFLVNAVAPDVIRLAPPLIITDAQVDAFVAAL 388
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 185 bits (473), Expect = 6e-51
Identities = 113/414 (27%), Positives = 196/414 (47%), Gaps = 42/414 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G YLD + V GH++ + KA+K Q K H L++ ++P ++L+E+L +
Sbjct: 53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPG 112
Query: 311 --QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ K+ F+ + G + E A+K++ + +K I ++HG T G+L++T
Sbjct: 113 GFEKKV---FFTNSGTESNEAAIKIA------RYHTGRKYIIAFLGAFHGRTYGSLSLT- 162
Query: 369 IQSFKEIYTS----LLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE-ILLKK--NHN 420
+ K + L+ + P+ RN + E + +E L KK
Sbjct: 163 --ASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPE 220
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
++AAII+EP +Q GG ++ + K +R++ + Y I LI DE+ G GRTGK FA EH
Sbjct: 221 EVAAIIVEP-IQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHF 279
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCA 537
+ PD + L+K I GG LPL V+ + + H++++ GNP+A A
Sbjct: 280 GVEPDIITLAKAIAGG-LPLGAVI----------GRAELMFLPPGSHANTFGGNPVAAAA 328
Query: 538 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQI 596
ALATLE ++ +L+ + + + K L L + I + R G++ +++ + E
Sbjct: 329 ALATLEEL-EEGLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPD 387
Query: 597 ETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
K A K LLL G + + ++PP I+ + E + + EL
Sbjct: 388 PKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKELL 441
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 182 bits (464), Expect = 1e-49
Identities = 107/405 (26%), Positives = 196/405 (48%), Gaps = 30/405 (7%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GK+Y+D V+ G+ + ++ + +K Q+ KL T++ I+ +EKL+ +
Sbjct: 70 DGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQMAKLP-FSPRRFTNETAIECAEKLTEIAG 127
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+L + G SA+ +ALK++ H K + L +S+HG +L A++V
Sbjct: 128 GELNRVLFAPGGTSAIGMALKLARHI------TGNFKVVSLWDSFHGASLDAISVGGEAC 181
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL- 430
F++ L+ I S ++ A + LE +++K I A I E +
Sbjct: 182 FRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY-LEYVIEK-EGGIGAFIAEAVR 239
Query: 431 ---VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
VQ Y K VREIC+ +N+ LI DEI G GRTG++F + I PD L
Sbjct: 240 NTDVQVP------SKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDIL 293
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
C+ KG+ GG +P++ ++T DK Y I L +++ +PL C AALAT+E+ +
Sbjct: 294 CIGKGLGGGLVPIAAMITKDK------YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ 347
Query: 548 DNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETF--SKKFF 604
+ +L+++ D + + + L + +P I + R G++W +++ + + + ++
Sbjct: 348 EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVL 407
Query: 605 VAALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
L N L + GN + L PP I+ + E+ + + + ++
Sbjct: 408 YRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKI 452
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 183 bits (466), Expect = 1e-49
Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 17/400 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSL-T 310
GK+YLDA++ W G S + A QLNKL + N T KP + L+++L + T
Sbjct: 88 GKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFT 147
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
K+G F+ + G+ A + +K+ ++Y G NKKKFI SYHG TL + +++ +
Sbjct: 148 ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLP 207
Query: 371 SFKEIYTSLLNKTYIITT--PDS-RNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAII 426
+ + + L +++ T P R G + E + +LE ++LK+ IAA I
Sbjct: 208 ALHQKFD--LPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFI 265
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP V AGG+I + Y + ++ + Y+I IADE+ GR G F C+ I PD
Sbjct: 266 AEP-VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDL 324
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ L+K ++ Y+P+ V+ + +I + I+ N + F H +YSG+P++C AL L+I+
Sbjct: 325 VSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIY 384
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+ NI + +++ + + + P I R G+I + +++ + F ++ V
Sbjct: 385 KERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTE-FVDNKSPNDPFPAEWGV 443
Query: 606 AAL------KNELLLRPIGNTVYLMPPYILNKNEIQHMTS 639
A K +L+R G+ + + PP I+ E+ + S
Sbjct: 444 GAYFGAECKKRGMLVRVAGDNIMMSPPLIITPEEVDELIS 483
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 172 bits (438), Expect = 3e-46
Identities = 115/403 (28%), Positives = 188/403 (46%), Gaps = 31/403 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQ 311
GKRYLD +S W G+ + A Q+ +L + M + TH VI+LSE L SL
Sbjct: 53 GKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLP 112
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
H Y + G+ A EV ++ YW G KK I N YHG TL A A+ ++
Sbjct: 113 GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKF 172
Query: 372 FKEIYTSLLNKTYIITTPDSRNI-------NKGN-SANEIA-RCAIFDLEILLKKNHNKI 422
E+ + PD +I N G + E R A+ E +L+ +
Sbjct: 173 MHEMGGLI---------PDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENV 223
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A + EP Q AGGMI Y ++ IC Y++ L ADE+ G GRTG++FA EH
Sbjct: 224 AGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF 282
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD L ++KG+T GY+P+ ++ + +I ++ + +F H +YSG+P+A A+A L
Sbjct: 283 EPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAVAIANL 340
Query: 543 EIFNKDNILQRISQDMKK-ITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFS 600
+ + ++ R+ D + + L + HP + + G++ A ED + F+
Sbjct: 341 KALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQ-FAEDKATRKRFA 399
Query: 601 KKFFVA------ALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ +A + +++R + + P + + EI +
Sbjct: 400 NENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDEL 442
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 168 bits (427), Expect = 7e-45
Identities = 116/430 (26%), Positives = 196/430 (45%), Gaps = 61/430 (14%)
Query: 251 FSGKRYLDAISSWWVNL-FGHSNSYINKALKNQLNKLEHV--MLSNLTHKPVIKLSEKLS 307
+ G+RYLD SS VN GH + + A++ Q +L V +N + + ++
Sbjct: 50 YEGRRYLD-FSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARS---EAARLIA 105
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
L F+ + GA A E A++M+ + + K + SYHG T A+ +T
Sbjct: 106 ERAPGDLSKVFFTNGGADANEHAVRMA------RLHTGRPKVLSAYRSYHGGTGSAINLT 159
Query: 368 -------------NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-I 413
+ F + L + TT E R A+ LE +
Sbjct: 160 GDPRRWPNDTGRAGVVHFFGPF--LYRSEFHATTE----------EEECER-ALAHLERV 206
Query: 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+ + + IAAI++E + AG +++ YL VRE+C+ + I LIADE+ G GRTGK
Sbjct: 207 IELEGPSTIAAILLESVPGTAG-ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK 265
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533
+FA EH + PD + +KG+ GY+PL V ++ I + + + +YSG+PL
Sbjct: 266 WFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR----PYPGGLTYSGHPL 321
Query: 534 ACCAALATLEIFNKDNILQ---RISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVI 589
AC AA+AT+ ++ I++ RI ++ + L L HP + R G+ WA + +
Sbjct: 322 ACAAAVATINAMEEEGIVENAARIGAEV--LGPGLRELAERHPSVGEVRGLGVFWALE-L 378
Query: 590 IEDPEQIETFSKKF--------FVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSA 640
+ D E E + AA K LL + GN ++++PP + ++E++ +
Sbjct: 379 VADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTVTEDEVREGLAI 438
Query: 641 IFQTFNELDE 650
+ D
Sbjct: 439 LDAALAVADA 448
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 166 bits (423), Expect = 2e-44
Identities = 118/419 (28%), Positives = 201/419 (47%), Gaps = 31/419 (7%)
Query: 252 SGKRYLDAISSWW-VNL-FGHSNSYINKALKNQLNKLEHVM-LSNLTHKPVIKLSEKLSS 308
SG + LDA + W VN+ +G + I +A Q+ +L + + +P I+L+ KL+
Sbjct: 44 SGHQLLDAFAGLWCVNVGYGQES--IVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAE 101
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE-TLGALAVT 367
L H ++ G+ AV+ A++ HYW G +KK+FI L+ YHG ++GA +T
Sbjct: 102 RAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGA-GLT 160
Query: 368 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKK----NHNKI 422
+ +F + L + I +P RN + IA + L K + +
Sbjct: 161 ALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA----SVAALRAKVAELGADNV 216
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA EP +Q +GG+I+ +LK +RE C I +ADE+ G GRTG FACE +
Sbjct: 217 AAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV 275
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-HSHSYSGNPLACCAALAT 541
PD + ++KG+T GY+P+ V+ +D +Y I + H ++YS +P++ L
Sbjct: 276 VPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEV 335
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF-- 599
L ++++ +L + + L +L HP + + R +G++ A +++ D F
Sbjct: 336 LRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVA-DKATKTPFDA 394
Query: 600 ----SKKFFVAALKNELLLRPIGNTVY-LMPPYILNKNEIQHMTSAIFQ-TFNELDEVI 652
+ + F A N L+ R G+ V P + E IF+ T LD+V+
Sbjct: 395 ALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEF----DLIFERTRKTLDDVL 449
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 162 bits (412), Expect = 3e-43
Identities = 110/405 (27%), Positives = 186/405 (45%), Gaps = 50/405 (12%)
Query: 253 GKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GKRYLD +S++ VN GH + I KAL Q LT ++ +
Sbjct: 36 GKRYLDFLSAYSAVNQ-GHCHPKIVKALTEQA--------QKLTLSSRAFYNDVFGEFAE 86
Query: 312 YKLGHCFYGSD-------GASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLG 362
Y +G D GA AVE A+K++ + Y + N+ + + ++HG TLG
Sbjct: 87 YV--TKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLG 144
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
A++++ + + + P + I N LE L+ + +
Sbjct: 145 AISMSTDPDSRTNFGPYV--------PGFKKIPYNNLE---------ALEEALEDHGPNV 187
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I+EP +Q G+++ D YLK VRE+C +N+ LIADEI G GRTGK +H +
Sbjct: 188 CAFIVEP-IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV 246
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD + L K ++GG P+S V+ D + +I H +Y GNPLAC A+A L
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGE------HGSTYGGNPLACAVAVAAL 300
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602
E+ ++ + + ++ + +I + + P I R +G++ A I+ D + +
Sbjct: 301 EVLEEEKLAEN-AEKLGEIFRDQLKKLPKPIITEVRGRGLLNA---IVIDESKTGRTAWD 356
Query: 603 FFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
+ + LL +P GN + L PP ++ + ++ I + +
Sbjct: 357 LCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 161 bits (408), Expect = 4e-43
Identities = 118/416 (28%), Positives = 193/416 (46%), Gaps = 54/416 (12%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK-PVIKLSEK 305
KL GK YLD + VN GH + KA+ Q L HV SN+ H P ++L+++
Sbjct: 8 KLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHV--SNVYHTIPQVELAKR 65
Query: 306 L--SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK-------FICLQNSY 356
L SS F+ + G A E A+K + Y + K F+ NS+
Sbjct: 66 LVASSFAD----RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSF 121
Query: 357 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 416
HG TLGALA+T+ + ++ + L+ P + GN E AR I
Sbjct: 122 HGRTLGALALTSKEQYRTPFEPLM--------PGVTFVEYGNL--EAARKLI-------- 163
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
K AA+ +EP VQ GG+ +L+ +R +C+ L+ DE+ G GRTG +A
Sbjct: 164 -QKGKTAAVFVEP-VQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWA 221
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536
E + PD + L+K + GG LP+ V+ T+K+ ++I + H +++G PL C
Sbjct: 222 HEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD------HGSTFAGGPLVCN 274
Query: 537 AALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQ 595
AALA L+ +K L +++ + + + L L +P + R G++ V I Q
Sbjct: 275 AALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLL----VGI----Q 326
Query: 596 IETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
++ + A + LL+ G+ V L+PP ++++ E++ + LD
Sbjct: 327 LDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPALD 382
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 157 bits (398), Expect = 4e-41
Identities = 108/417 (25%), Positives = 191/417 (45%), Gaps = 32/417 (7%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+K+ G Y+D +S V GH+N + KA+K Q +KL H + L+EK
Sbjct: 33 AKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEK 92
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L + +G G+ A + A+K + + + ++K + SY+G T GA++
Sbjct: 93 LIEIAPGDNPKVSFGLSGSDANDGAIKFA------RAYTKRRKILSYLRSYYGSTYGAMS 146
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI--- 422
+T + L+ + I PD G C + +E + +K ++
Sbjct: 147 LTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGS---CKMECVEYIKEKFEGEVYAE 203
Query: 423 --AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
AA+ EP +Q GMI+ Y K +++I + + I L+ DE+ G GRTGK+FA EH
Sbjct: 204 GVAALFAEP-IQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHF 262
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 540
+ PD + L K + GG LP+S + +I +S + H+ + SGNP+A AALA
Sbjct: 263 GVEPDIITLGKPLGGG-LPISATIGRAEIMDS------LPPLAHAFTLSGNPVASAAALA 315
Query: 541 TLEIFNKDNILQRISQ----DMKKITKALTSLITHPKIINFRQKGMIWAFDVII--EDPE 594
+E + N+L+R + K++ + H I + R G++ D++ E E
Sbjct: 316 VIEEIEEKNLLKRAEKLGNYTKKRLEEMKKK---HELIGDVRGIGLMIGVDLVKDRETKE 372
Query: 595 QIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+ + K A + L++ GN + + PP + K + + + +++E
Sbjct: 373 RAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 155 bits (392), Expect = 2e-40
Identities = 111/426 (26%), Positives = 187/426 (43%), Gaps = 33/426 (7%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+ GK YLD ++ GH++ + + + + L + +LT E L
Sbjct: 32 WVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEAL 91
Query: 307 SS-LTQYKLGHC--FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 363
+ + + K+ + F G GA AVE A+K++ K + + I +HG T+GA
Sbjct: 92 LNIIPKRKMDYKLQFPGPSGADAVEAAIKLA------KTYTGRTNVISFSGGFHGMTIGA 145
Query: 364 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN--- 420
LAVT K L+ + P G + +I E ++ +
Sbjct: 146 LAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVD 205
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
K AA+I+E +Q GG++ S +L+ +RE+ ++I LI DE+ G GR+G FA EHA
Sbjct: 206 KPAAVILEA-IQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHA 264
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 540
I PDF+ +SK + GG LPL+ V+ +++ H+ ++ GN LA
Sbjct: 265 GIEPDFVVMSKAVGGG-LPLA-VLLIAPEFDAWQPAG------HTGTFRGNQLAMVTGTE 316
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIED--PEQIE 597
L + DN+ Q + ++IT L +I HP I N R +G++ ++ E +
Sbjct: 317 ALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATG 376
Query: 598 TFSKKFFVAA------LKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + +AA +N LLL G L+ P +++ E + S Q E
Sbjct: 377 AYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEA 436
Query: 649 DEVINL 654
+ L
Sbjct: 437 LAEVRL 442
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 153 bits (388), Expect = 5e-40
Identities = 105/415 (25%), Positives = 189/415 (45%), Gaps = 64/415 (15%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S L GK Y+D + +GH+N + +AL ++++ + H + K
Sbjct: 27 STLWDEDGKEYIDFFAGAGALNYGHNNPKLKQAL------IDYLADDGIIHSLDMATEAK 80
Query: 306 ---LSSLTQ---------YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 353
L + + YK+ F G G +AVE ALK++ + + +
Sbjct: 81 REFLETFNEIILKPRGLDYKVQ--FPGPTGTNAVESALKLA------RKVTGRSNVVSFT 132
Query: 354 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413
N++HG TLG+L+VT + ++ L+ P + E
Sbjct: 133 NAFHGMTLGSLSVTGNRFKRQGAGVPLSNV--SRMPYDGYLGGDVDTIAY-------FEK 183
Query: 414 LLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470
LL+ + + AA+I+E VQ GG+ + +L+ + ++C ++I LI D+I GCGR
Sbjct: 184 LLEDSSSGVDLPAAVILET-VQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGR 242
Query: 471 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHS 527
TG FF+ E A I PD +CLSK I+G LPL+L + K ++++ H+ +
Sbjct: 243 TGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTL----------IKPELDVWKPGEHNGT 292
Query: 528 YSGNPLACCAALATLEIFNKDNILQR-ISQDMKKITKALTSLI-THPKII-NFRQKGMIW 584
+ GN LA A A LE + D+ ++ + + + I + L ++ +P++I R +G++
Sbjct: 293 FRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQ 352
Query: 585 AFDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQH 636
+ D + K AA +N L++ P + L+PP +++ +Q
Sbjct: 353 GIECGDGD------LAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQ 401
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 148 bits (377), Expect = 1e-38
Identities = 104/394 (26%), Positives = 177/394 (44%), Gaps = 53/394 (13%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSEKLSSLT 310
GK Y+D V GH + + KALK Q KL H +SN T++P ++L++KL T
Sbjct: 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--ISNVFTNEPALRLAKKLIDAT 95
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ F+ + GA A E A K++ Y ++ K + I NS+HG TL ++V
Sbjct: 96 FAE--RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQP 153
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+ + + G +I DL + + A+++EP+
Sbjct: 154 KYSDGF--------------------GPKPADITHVPFNDLAAVKAVIDDHTCAVVVEPI 193
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
Q GG+I +L+ +RE+C+ +N LI DE+ G GRTG FA H + PD L +
Sbjct: 194 -QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSA 252
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
K + GG+ P+ ++TT +I + + H +Y GNPLAC A A +I N +
Sbjct: 253 KALGGGF-PIGAMLTTAEIASH------FKVGTHGSTYGGNPLACAVAEAVFDIINTPEV 305
Query: 551 LQRISQDMKKITKALTSLITHPKIIN--------FRQKGMIWAFDVIIEDPEQIETFSKK 602
L+ + ++ L + IN R G++ + E Q + ++
Sbjct: 306 LEGVKARRQRFVDGL-------QKINQKYGVFSEIRGMGLL----IGAELKPQYKGRARD 354
Query: 603 FFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQ 635
F AA + +++ G + + P ++ + +I
Sbjct: 355 FLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADID 388
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 147 bits (373), Expect = 1e-38
Identities = 110/398 (27%), Positives = 194/398 (48%), Gaps = 61/398 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+RYLD I+ VN+ GH++ + + QL KL V H+ ++ E+LS Y
Sbjct: 23 GRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV-VAGPMFEHEEKEEMLEELSKWVNY 81
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
+ + + G+ G AVE ALK + + + +K+ I + N++HG T+GAL+ T +
Sbjct: 82 E--YVYMGNSGTEAVEAALK------FARLYTGRKEIIAMTNAFHGRTMGALSATWKPKY 133
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
+E + L+ P ++I + E A+ AI + AA+I EP +Q
Sbjct: 134 REDFEPLV--------PGFKHIPFNDV--EAAKEAI----------TKETAAVIFEP-IQ 172
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
GG++ ++K +R++ + LIADE+ G RTGKF A EH ++ PD + + KG
Sbjct: 173 GEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKG 231
Query: 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
I G +P+SL +T + H ++ GNPLAC A TL I ++ +++
Sbjct: 232 IGNG-VPVSLTLTNFDVERG----------KHGSTFGGNPLACKAVAVTLRILRRERLVE 280
Query: 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE- 611
+ + +I +++ R +G++ ++++ P +V L+N
Sbjct: 281 KAGEKFIEIKGE--------RVVTTRGRGLM--IGIVLKKP-------VGKYVEELQNRG 323
Query: 612 LLLRPIGNTVY-LMPPYILNKNEIQHMTSAIFQTFNEL 648
L+ G V L+PP I++K+ ++ SAI N++
Sbjct: 324 YLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 148 bits (376), Expect = 2e-38
Identities = 110/392 (28%), Positives = 178/392 (45%), Gaps = 42/392 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G R +D S V GHS+ + A++ Q+ + H ++ + L+EKL+ +
Sbjct: 32 GNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPG 91
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
F+ S GA AVE A+K++ + + + + + +HG T +A+T +
Sbjct: 92 SGPKKSVFFNS-GAEAVENAVKIA------RSYTGRPGVVAFDHGFHGRTNMTMALTAKV 144
Query: 370 QSFK--------EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
+K E+Y + L Y D + G A + D+ N
Sbjct: 145 MPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELA-AARAIFVIDVGA------NN 197
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
+AA++IEP VQ GG I+ ++ + + C + I IADE+ G RTG FACEH
Sbjct: 198 VAALVIEP-VQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
PD + +K + G LPLS V +I ++ +Y+GNPLAC AALA
Sbjct: 257 PEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGG------LGGTYAGNPLACAAALAV 309
Query: 542 LEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIE--- 597
L I + +++R Q + +T LT+L P+I + R G + A +++ DP E
Sbjct: 310 LAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV--DPGTTEPDA 367
Query: 598 TFSKKFFVAALKNELLLRPI---GNTVYLMPP 626
+++ AA LLL GN + +PP
Sbjct: 368 GLAERIATAAHAAGLLLLTCGMFGNIIRFLPP 399
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 147 bits (373), Expect = 3e-38
Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 33/324 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSE 304
S++ GK Y+D VN GH++ + KAL Q +KL H + N T++PV++L++
Sbjct: 27 SRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH--IGNGYTNEPVLRLAK 84
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL T F+ + GA A E ALK++ Y +K +K + + +NS+HG TL +
Sbjct: 85 KLVDATFAD--KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTV 142
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+V + + + L I DL +K A
Sbjct: 143 SVGGQPKYSQGFAPL--------------------PGGIKHAPYNDLAAAKALISDKTCA 182
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP +Q GG++ D +LK +RE+C+ +N LI DE+ G GRTG+ +A H + P
Sbjct: 183 VIVEP-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTP 241
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L +K + GG+ P+ ++TT + ++ + H +Y GNPLAC A L++
Sbjct: 242 DILTSAKALGGGF-PIGAMLTTTE------IAAHLKVGTHGTTYGGNPLACAVAGKVLDL 294
Query: 545 FNKDNILQRISQDMKKITKALTSL 568
N +L + Q L +
Sbjct: 295 VNTPELLAGVKQRHDLFVDGLEKI 318
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 146 bits (370), Expect = 2e-37
Identities = 108/398 (27%), Positives = 185/398 (46%), Gaps = 54/398 (13%)
Query: 253 GKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GK+YLD +S++ VN GH + I KAL Q KL + S + + LT
Sbjct: 74 GKKYLDFLSAYSAVNQ-GHCHPKIIKALTEQAEKL--TLSSRAFYNDKFPEFAEY--LTS 128
Query: 312 YKLGHCFYGSD-------GASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLG 362
+G D GA VE A+K++ + Y K + N+ + +HG TL
Sbjct: 129 M------FGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLA 182
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
A++++ + LL P ++ G+ + LE + +++ ++I
Sbjct: 183 AISMSCDNEATRGFGPLL--------PGHLKVDFGD---------LDALEKIFEEDGDRI 225
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA + EP +Q G+++ YLK VRE+C+ +N+ +IADEI G RTGK AC+ E+
Sbjct: 226 AAFLFEP-IQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV 284
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD + L K + GG +P+S V+ + I H ++ GNPLA A+A L
Sbjct: 285 RPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGE------HGSTFGGNPLASAVAMAAL 338
Query: 543 EIFNKDNILQRISQDMKKITKALTSLIT--HPKII-NFRQKGMIWAFDVIIEDPEQIETF 599
++ + + +R S + + + I PK+I R +G+ + ++ + ++
Sbjct: 339 QVVQDEKLAER-SAKLGQELRDQLQKIQKQFPKLIKEVRGRGL---LNAVVLNSPKLGPV 394
Query: 600 SKKFFVAALK-NELLLRPI-GNTVYLMPPYILNKNEIQ 635
S LK LL +P + L PP ++++E+Q
Sbjct: 395 SAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQ 432
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 142 bits (360), Expect = 1e-36
Identities = 109/397 (27%), Positives = 186/397 (46%), Gaps = 57/397 (14%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSE 304
+K+ +GK YLD S V GH + + KA++ QL+ + HV SNL + +++
Sbjct: 21 TKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV--SNLFTNSLQEEVAS 78
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L+ + L F+ + GA A E ALK++ + G K K + + S+HG T G +
Sbjct: 79 LLAENSAGDL--VFFCNSGAEANEAALKLARKH---TG---KSKIVTFEQSFHGRTFGTM 130
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T + KE + LL P N D++ L + + ++AA
Sbjct: 131 SATGQEKIKEGFGPLLPG--FTHVP----FN--------------DIKALKEVMNEEVAA 170
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+++E VQ GG+I D +L+ V+ +C + LI DE+ G GRTG FA E + P
Sbjct: 171 VMLEV-VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDP 229
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCAALAT 541
D + ++KG+ G +P+ + I K F H ++ GNPLA AA
Sbjct: 230 DIVTVAKGLGNG-IPVGAM---------IGKKELGTAFGPGSHGSTFGGNPLAMAAAKEV 279
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIETFS 600
L++ + + L+ + + + + L + H + N R KG++ + IE E++
Sbjct: 280 LQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLM----IGIECTEEVAP-- 333
Query: 601 KKFFVAALKNE-LLLRPIG-NTVYLMPPYILNKNEIQ 635
+ L+ E LL+ G N + L+PP ++ K E+
Sbjct: 334 ---VIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELD 367
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 143 bits (361), Expect = 1e-36
Identities = 124/474 (26%), Positives = 206/474 (43%), Gaps = 83/474 (17%)
Query: 207 KYSKSLIFNRQALHAYKLGLIHP------KNNLKLKWRINLPDDISKLITFSGKRYLDAI 260
+KSL+ R A +G IHP +N ++ G+ YLD
Sbjct: 2 NTNKSLMQRRSAAVPRGVGQIHPIFADRAEN--------------CRVWDVEGREYLDFA 47
Query: 261 SSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-CFY 319
V GH + + A++ QL KL H L ++P ++L EK++
Sbjct: 48 GGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLL 107
Query: 320 GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT------------ 367
+ G+ AVE A+K++ G I +YHG T LA+T
Sbjct: 108 VTTGSEAVENAVKIARAATKRSGV------IAFTGAYHGRTHYTLALTGKVNPYSAGMGL 161
Query: 368 ---NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---NK 421
++ ++ +Y L+ +++ ++ I R IF KN
Sbjct: 162 MPGHV--YRALYPCPLH-----------GVSEDDAIASIER--IF-------KNDAAPED 199
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
IAAIIIEP VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E
Sbjct: 200 IAAIIIEP-VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
+ D +K I GG+ PL+ V ++ ++I +Y+GNP+AC AALA
Sbjct: 259 VAADLTTFAKSIAGGF-PLAGVTGRAEVMDAIAPGG------LGGTYAGNPIACAAALAV 311
Query: 542 LEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIE--- 597
L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED + +
Sbjct: 312 LKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHSKPNA 370
Query: 598 TFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + A L+L P N + ++ P + +I+ I Q F+E
Sbjct: 371 KLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 147 bits (374), Expect = 2e-36
Identities = 107/449 (23%), Positives = 187/449 (41%), Gaps = 97/449 (21%)
Query: 257 LDAISSWWVNLFGHSNSYINKALKNQL--------NKLEHVMLSNLTHKPVIKLSEKLSS 308
DA +SWW + L+ +L + HVM H+P ++ +E L
Sbjct: 368 FDACASWWT-------QGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELL-- 418
Query: 309 LTQYKLG--------HCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK------------ 347
LG F+ +G++A+EVALKM+F + + GFL
Sbjct: 419 -----LGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIEL 473
Query: 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------------------NKTYIIT 387
K + L SYHG+TLGA+ Q+ ++T L N + I+
Sbjct: 474 KVLALDGSYHGDTLGAM---EAQA-PSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNIS 529
Query: 388 TPDSRN-INKGNSANEIARCAIFDLEILLKKNHN--------------------KIAAII 426
P+ + +G +R +FD IAA+I
Sbjct: 530 LPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALI 589
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP++ AGGM++ D ++ + + ++C + I +I DE+ G R G A E PD
Sbjct: 590 IEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDI 649
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
C +K +TGG +PL+ + T++++ + + ++ LH HSY+ +P+ C AA L+ +
Sbjct: 650 ACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK 709
Query: 547 KDNILQRISQDMKKI-----TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ-IETFS 600
+ + ++ + + ++ + P + G + A ++ E +
Sbjct: 710 DPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLY 769
Query: 601 KKFFVAALKNE--LLLRPIGNTVYLM-PP 626
+ V L+ E + RP+GN VYLM P
Sbjct: 770 ARSVVRRLRREDGIYARPLGNVVYLMCGP 798
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 139 bits (351), Expect = 2e-35
Identities = 114/397 (28%), Positives = 183/397 (46%), Gaps = 66/397 (16%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKLSSLTQ 311
G RY+D +S++ GH + I +ALK+Q +K+ + S H + EK++ LT
Sbjct: 39 GNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKV--TLTSRAFHSDQLGPWYEKVAKLT- 95
Query: 312 YKLGHCFYGSD-------GASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLG 362
G D GA AVE A+K + + Y+ KG NK + I + ++HG T+
Sbjct: 96 --------GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMA 147
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
A+++++ + +K + +L P + I G DLE L
Sbjct: 148 AVSLSSEEEYKRGFGPML--------PGIKKIPYG------------DLEALKAAITPNT 187
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA ++EP +Q G+ + +LK RE+C N+ IADEI G GRTGK FAC+ +
Sbjct: 188 AAFLVEP-IQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV 246
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAAL 539
PD L K + GG P+S V I + +F H ++ GNPLAC ++
Sbjct: 247 TPDMYILGKALGGGVFPISCVAANRDI---------LGVFTPGSHGSTFGGNPLACAVSI 297
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
A LE+ ++ + +R S ++ + K I +P I R +G+ ++
Sbjct: 298 AALEVLEEEKLPER-SLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVEL---------NE 347
Query: 600 SKKFFVAALKNE-LLLRPIGNTVY-LMPPYILNKNEI 634
+ + ALK E LL + TV PP ++ K E+
Sbjct: 348 PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEEL 384
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 139 bits (351), Expect = 2e-35
Identities = 91/323 (28%), Positives = 156/323 (48%), Gaps = 31/323 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S+L GK Y+D VN GH++ + +AL Q +K H + T++PV++L++K
Sbjct: 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTG-NGYTNEPVLRLAKK 89
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L T F+ + GA A E ALK++ Y +++ +K + +N++HG TL ++
Sbjct: 90 LIDATFAD--RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVS 147
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
+ + + L +I A DL ++ A+
Sbjct: 148 AGGQPKYSQDFAPL--------------------PPDIRHAAYNDLNSASALIDDQTCAV 187
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP +Q GG+I D +L+ +RE+C+ +N LI DE+ G GRTG+ +A H + PD
Sbjct: 188 IVEP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L +K + GG+ P+ ++TT+K + + + H +Y GNPLA A LE+
Sbjct: 247 VLTTAKALGGGF-PIGAMLTTEK------CASVMTVGTHGTTYGGNPLASAVAGKVLELI 299
Query: 546 NKDNILQRISQDMKKITKALTSL 568
N +L + Q + L ++
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTI 322
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 139 bits (353), Expect = 3e-35
Identities = 116/422 (27%), Positives = 186/422 (44%), Gaps = 98/422 (23%)
Query: 246 SKLITFSGKRYLD----AISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH----- 296
S L GK Y+D A + +N +GH+N + +AL ++++ +TH
Sbjct: 31 SWLYDEDGKEYIDFFAGAGA---LN-YGHNNPVLKQAL------IDYLQRDGITHGLDMH 80
Query: 297 ---KPVIKLSEKLSSLTQ---------YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 344
K E L + + YK+ F G G +AVE ALK++ G
Sbjct: 81 TTAK-----REFLETFEETILKPRGLDYKVQ--FTGPTGTNAVEAALKLARKV---TG-- 128
Query: 345 NKKKFICLQNSYHGETLGALAVTNIQSF-KEIYTSLLNKT------YIITTPDSRNINKG 397
+ + N +HG TLG+LAVT + L N T Y G
Sbjct: 129 -RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYF-----------G 176
Query: 398 NSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454
+ +A LE LL+ + + AA+I+E VQ GG+ + + +L+ + ++C
Sbjct: 177 GDVDTLA-----YLEKLLEDSSSGVDLPAAVIVET-VQGEGGINVASAEWLQRLAKLCRK 230
Query: 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY-LPLSLVMTTDKIYNSI 513
++I LI D+I GCGRTG FF+ E A I PD + LSK I GY LP++LV+
Sbjct: 231 HDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI-SGYGLPMALVL--------- 280
Query: 514 YYKNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQR-ISQDMKKITKALTSLI 569
K ++++ H+ ++ GN LA A A LE + D+ ++ + + + + L +
Sbjct: 281 -IKPELDVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIA 339
Query: 570 -THPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLM 624
+P R +GM+ D D E + K A +N L++ P V L+
Sbjct: 340 AKYPGLGAEVRGRGMMQGIDF--GDGE----LAGKIAAEAFENGLIIETSGPEDEVVKLL 393
Query: 625 PP 626
PP
Sbjct: 394 PP 395
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 137 bits (348), Expect = 2e-34
Identities = 107/412 (25%), Positives = 191/412 (46%), Gaps = 35/412 (8%)
Query: 252 SGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSS 308
G+RY+DA + + VN+ G+ + + +A+ Q +L H + + T + I LS+++
Sbjct: 48 QGRRYIDAFAGLYCVNV-GYGRTEVAEAIAEQAKELAYYHTYVGHGT-EASITLSKRIID 105
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ +YG G+ A E +K+ ++Y G KKK I YHG + ++T
Sbjct: 106 RAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTG 165
Query: 369 IQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANE-IARCAIFDLEILLKKNHNKIAAII 426
+ F + + + + P R + G S + A CA E++L + + IAA I
Sbjct: 166 LSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFI 225
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP V GG++ + Y ++ + Y+I LIADE+ G GR G F +H I PD
Sbjct: 226 AEP-VLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDL 284
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ ++KG+T Y PLS + +K+++ + + H +YSG+P+ AALA L+I
Sbjct: 285 ITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDIL 344
Query: 546 NKDNILQRISQD----MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSK 601
++N++ ++ ++ A HP + R GM+ A + + D + +
Sbjct: 345 ERENLVGNAAEVGAYFRARLRAAFGD---HPLVGEVRGVGMLAAVE-FVADRD-----DR 395
Query: 602 KFFVAALK-----------NELLLR--PIGNTVYLMPPYILNKNEIQHMTSA 640
F ALK ++ R P G+ + PP +L + E + +
Sbjct: 396 TPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAI 447
>gnl|CDD|214877 smart00876, BATS, Biotin and Thiamin Synthesis associated domain.
Biotin synthase (BioB), , catalyses the last step of the
biotin biosynthetic pathway. The reaction consists in
the introduction of a sulphur atom into dethiobiotin.
BioB functions as a homodimer. Thiamin synthesis if a
complex process involving at least six gene products
(ThiFSGH, ThiI and ThiJ). Two of the proteins required
for the biosynthesis of the thiazole moiety of thiamine
(vitamin B(1)) are ThiG and ThiH (this entry) and form a
heterodimer. Both of these reactions are thought of
involve the binding of co-factors, and both function as
dimers.. This domain therefore may be involved in
co-factor binding or dimerisation.
Length = 94
Score = 126 bits (318), Expect = 2e-34
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 859 PINNLVQIKGTPLYG-SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 917
PIN L I+GTPL + P EF+RTIA AR+ +P + IR+S GR+ + QA CF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 918 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
AGANSIF GDK LTT ++ DD +L+KLG+
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLE 93
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 136 bits (345), Expect = 3e-34
Identities = 102/428 (23%), Positives = 194/428 (45%), Gaps = 36/428 (8%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L GK Y+D ++S GH+ + +A+K Q +K H + + H+P+++L++KL
Sbjct: 36 LTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLC 95
Query: 308 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++ F G G+ A + +K + + + + I N+YHG T G+L+
Sbjct: 96 ELAPGDFEKRVTF-GLSGSDANDGIIKFA------RAYTGRPYIISFTNAYHGSTYGSLS 148
Query: 366 VTNIQ-SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR-CAIFDLEILLKKNHNKI 422
++ I + + Y LL I PD R + + AN + A +++
Sbjct: 149 MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEV 208
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I+IE +Q GG++ Y + + + C + I D+I G GRTGK+ + H I
Sbjct: 209 ACIVIET-IQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI 267
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD + K + GG +P+S ++ +I S+ ++ + NP++C AALAT+
Sbjct: 268 TPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEAPAHL------FTTGANPVSCAAALATI 320
Query: 543 EIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK 601
++ +++LQR ++ + K ++ + + + R G+ D I+ D + ++
Sbjct: 321 DMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGID-IVSDKKLKTRDNE 379
Query: 602 KFFVAALK--------NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVIN 653
AALK +++ GN + PP ++ ++ + I Q F L+
Sbjct: 380 ----AALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA--G 433
Query: 654 LFNLPFND 661
+ P
Sbjct: 434 KLDQPDIS 441
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 134 bits (339), Expect = 8e-34
Identities = 104/422 (24%), Positives = 178/422 (42%), Gaps = 73/422 (17%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT------HKPV 299
S L +GKRYLD I W VN GH N + +AL Q KL + ++P+
Sbjct: 28 SWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKL-------INPSPAFYNEPM 80
Query: 300 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---KFICLQNSY 356
KL+ L+ + + F+ + GA A E A+K++ + G +K + I +S+
Sbjct: 81 AKLAGLLTQHSCFD--KVFFANSGAEANEGAIKLARKW----GRKHKNGAYEIITFDHSF 134
Query: 357 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA---RCAIFDLEI 413
HG TL ++ + + I+ A ++ + + D+
Sbjct: 135 HGRTLATMSASGKPGWDTIF-----------------------APQVPGFPKAELNDIAS 171
Query: 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+ K +K A+++EP VQ GG+I +++ +R + + + LI DE+ GCGRTG
Sbjct: 172 VEKLITDKTVAVMLEP-VQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT 230
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH---SYSG 530
FA E + I PD + L KGI GG +PL+ ++ + + +F +Y+G
Sbjct: 231 LFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAE----------VAVFEAGDQGGTYNG 279
Query: 531 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII 590
NPL +A + L+ + + + + L L + R +G++ A +
Sbjct: 280 NPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEGERGEGLLRALLLGK 339
Query: 591 EDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+ QI ++ L LL P N + MP + EI M L
Sbjct: 340 DIGPQIVEKARDMQPDGL---LLNAPRPNLLRFMPALNVTTEEIDQM-------IAMLRS 389
Query: 651 VI 652
V+
Sbjct: 390 VL 391
>gnl|CDD|211331 cd02557, PseudoU_synth_ScRIB2, Pseudouridine synthases similar to
Saccharomyces cerevisiae RIB2. Pseudouridine synthase,
Saccharomyces cerevisiae RIB2_like. This group is
comprised of eukaryotic and bacterial proteins similar
to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p
and human hRPUDSD2. S. cerevisiae RIB2 displays two
distinct catalytic activities. The N-terminal domain of
RIB2 is RNA:psi-synthase which makes psi32 on
cytoplasmic tRNAs. Psi32 is highly phylogenetically
conserved. The C-terminal domain of RIB2 has a DRAP
deaminase activity which catalyses the formation of
5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione
5'-phosphate from
2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate during riboflavin biosynthesis. S.
cerevisiae Pus6p makes the psi31 of cytoplasmic and
mitochondrial tRNAs.
Length = 213
Score = 127 bits (322), Expect = 3e-33
Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 36/207 (17%)
Query: 28 KLDIIYEDNEIIILNKSAGLVVHPAIGN-----LSGTLFD--NLLEIYPFLINVPRAGIV 80
+ I++ED+++++++K +G+ VHP G ++ L L E+ P
Sbjct: 15 PIKIVHEDDDLLVVDKPSGIPVHPT-GRYRYNTVTEILKSEYGLTELRP----------C 63
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPH 139
HRLD+ +SGL++ AK+ ++ L Q++ V+++YLA V G P +++ I
Sbjct: 64 HRLDRLTSGLLLFAKTSQTASRLQQQIRSREVKKEYLARVKGEFPDGEVVVDQPIG---L 120
Query: 140 NRIKMTVSKNFNA--KPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGH 196
K + + + K A T ++RL+ N + S++ C TGRTHQIRVH+Q+LGH
Sbjct: 121 VSPKGGLRNDVDEKGKDARTIFKRLSY---NGDLNTSVVLCKPITGRTHQIRVHLQYLGH 177
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYK 223
IV D + Y+ I+ LHA +
Sbjct: 178 PIVNDPI----YNNLGIY----LHALR 196
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 134 bits (338), Expect = 3e-33
Identities = 111/403 (27%), Positives = 195/403 (48%), Gaps = 34/403 (8%)
Query: 248 LITFSGKRYLD---AISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 304
+ G +Y+D AI + V GHS+ + +AL Q+++ H + + ++P I+L+E
Sbjct: 48 VTDVDGNQYIDFAGAIGTINV---GHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAE 104
Query: 305 KLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
KL++L + F S GA AVE A+K++ Y +G I +HG TL
Sbjct: 105 KLAALAPGSFDKKVLFLNS-GAEAVENAVKIARKYTKRQGI------ISFSRGFHGRTLM 157
Query: 363 ALAVTN-IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI--FDLEILLKKNH 419
+ +T+ ++ +K + + Y P +G + + I F + +
Sbjct: 158 TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAP 217
Query: 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
IAA+++EP VQ GG I+ +++ VR IC+ + I +ADEI G RTGK+FA EH
Sbjct: 218 ETIAAVVMEP-VQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEH 276
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539
++ PD + +SK + G +P+S V+ +I + +Y+G+PL C AAL
Sbjct: 277 FDVVPDLITVSKSLGAG-VPISGVIGRKEIMDE------SAPGELGGTYAGSPLGCAAAL 329
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE- 597
A L+I K+N+ R + K + + + I + R G + AF+ +++D + E
Sbjct: 330 AVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFE-LVQDRKTKEP 388
Query: 598 --TFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQ 635
T + A K LLL GN + ++ P ++ +++
Sbjct: 389 DKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLE 431
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 132 bits (333), Expect = 3e-33
Identities = 99/395 (25%), Positives = 170/395 (43%), Gaps = 55/395 (13%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ LI GK+YLD S V G + + +AL+ Q + H P + L+
Sbjct: 21 NYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAG--------LIWHSPNLYLNSL 71
Query: 306 LSSLTQYKLGH----CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 361
+ Q +G F+ + GA A E A+K++ + K++ I QNS+HG T
Sbjct: 72 QEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIA------RKATGKQEIITFQNSFHGRTF 125
Query: 362 GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
G+++ T K+ + G+ + DL + +
Sbjct: 126 GSMSATGQDKIKDGF--------------------GDGVPHFSYAIFNDLNSVKALVNKN 165
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
AA+++E LVQ G++ D ++K + + C I LI DE+ G GRTGK +A EH
Sbjct: 166 TAAVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYG 224
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
I PD L+KG+ G +P+ ++ + + Y + H ++ GN L+ AA AT
Sbjct: 225 IEPDIFTLAKGLANG-VPVGAMLAKSSLGGAFGYGS------HGSTFGGNKLSMAAASAT 277
Query: 542 LEIFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 600
L+I L++ ++ + + L +L + R G + + D Q+ +
Sbjct: 278 LDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIET-TADLSQLVEAA 336
Query: 601 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 635
+ K ++L N + L+PP L K EI+
Sbjct: 337 RD------KGLIVLTAGTNVIRLLPPLTLTKEEIE 365
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 130 bits (329), Expect = 4e-32
Identities = 117/407 (28%), Positives = 184/407 (45%), Gaps = 45/407 (11%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL--- 309
G +YLD ++ GH++ + +++++ L + +LT SE L SL
Sbjct: 57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPG 116
Query: 310 --TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+Y L G GA AVE A+K++ K + + I YHG T GALAVT
Sbjct: 117 QGKEYCLQFT--GPSGADAVEAAIKLA------KTYTGRSNVISFSGGYHGMTHGALAVT 168
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRN--INKGNSANEIARCAIFDLEIL-LKKNHNKIAA 424
S K L+ + P + G A A F+ I ++ K AA
Sbjct: 169 GNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAA 228
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+E +Q GG+ +L+ +RE+ + I LI DE+ G RTGK FA EHA I P
Sbjct: 229 VILEA-IQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP 287
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + +SK + GG LPL+ V+ K +++ H+ ++ GN LA L TL+I
Sbjct: 288 DIIVMSKAVGGG-LPLA-VLGIKKEFDAWQPGG------HTGTFRGNQLAMATGLTTLKI 339
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE------------ 591
++N+ Q ++ + + L L +P I N R +G++ +++ E
Sbjct: 340 LKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPA 399
Query: 592 DPEQIETFSKKFFVAALKNELLLRP---IGNTVYLMPPYILNKNEIQ 635
D E K F +N LLL GN V L+PP ++ + E +
Sbjct: 400 DGELAAAIQKACF----ENGLLLERGGRNGNVVRLLPPLLITQAECE 442
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 128 bits (324), Expect = 1e-31
Identities = 103/385 (26%), Positives = 185/385 (48%), Gaps = 34/385 (8%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G+RY+D + V GH + + A+K QL++ H + ++ ++L+E+L++L
Sbjct: 39 GRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPG 98
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
+ F + GA AVE A+K++ + I +HG T +++T +
Sbjct: 99 DFAKKTIFV-TTGAEAVENAVKIARAA------TGRSAVIAFGGGFHGRTFMGMSLTGKV 151
Query: 370 QSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428
+K + +++ Y + P + ++ S + + D++ ++AAIIIE
Sbjct: 152 VPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD------PQRVAAIIIE 205
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P VQ GG + ++K +RE+C+ + I LIADE+ G RTGK FA EH E+ D
Sbjct: 206 P-VQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTT 264
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
++KG+ GG PL+ V +I ++ +Y GNPL AA A L++ ++
Sbjct: 265 MAKGLAGG-FPLAAVTGRAEIMDAPGPGG------LGGTYGGNPLGIAAAHAVLDVIEEE 317
Query: 549 NILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKFF 604
++ +R +Q ++ + L SL P+I + R G + A V D + F+ +
Sbjct: 318 DLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNA--VEFNDADSGLPSAEFANRVR 375
Query: 605 VAALKNELLLRPI---GNTVYLMPP 626
+ AL+ L+L GN + + P
Sbjct: 376 LKALEKGLILLTCGVHGNVIRFLAP 400
>gnl|CDD|216150 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase. Members
of this family are involved in modifying bases in RNA
molecules. They carry out the conversion of uracil bases
to pseudouridine. This family includes RluD, a
pseudouridylate synthase that converts specific uracils
to pseudouridine in 23S rRNA. RluA from E. coli converts
bases in both rRNA and tRNA.
Length = 149
Score = 119 bits (299), Expect = 4e-31
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSI 97
I++NK AG+ VHP + L + + R VHRLD+N+SGL+++AK
Sbjct: 1 YIVVNKPAGVPVHPTDPS---DLLSLTALLLVAELGKFRLYPVHRLDRNTSGLLLLAKDG 57
Query: 98 KSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALT 157
++ L V+++YLA+V G + G I A I + + + K A+T
Sbjct: 58 EAANKLNKLFPERKVEKEYLALVDGPEEEEGTIKAPI--KKDKAVGFRKKEELDGKLAVT 115
Query: 158 YYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
+ L +G K SL+ L TGR HQIR H+
Sbjct: 116 HLRVLRSGSKEKY--SLVELELVTGRKHQIRAHLAA 149
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 126 bits (318), Expect = 9e-31
Identities = 109/402 (27%), Positives = 182/402 (45%), Gaps = 63/402 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G R +D S V G+S + +A++ Q+ + H ++ + ++E+L+ LT
Sbjct: 55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPG 114
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
++ + S GA AVE A+K++ Y ++ + ++YHG T +A+T
Sbjct: 115 DHEKRSALFNS-GAEAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMALTAKS 167
Query: 371 S-FK--------EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI--FDLEILLKKNH 419
+K E+Y + ++ Y E A AI + ++
Sbjct: 168 MPYKSGFGPFAPEVYRAPMSYPYRDPKGL------ATDGEEAAARAITVIEKQV----GA 217
Query: 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ +AA+IIEP +Q GG I+ +L + E C + IADE+ G RTG +FACEH
Sbjct: 218 DNLAAVIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEH 276
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH------SYSGNPL 533
I PD + +KGI GG LPLS V +I ++ H +Y GNP+
Sbjct: 277 EGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAP------------HPGGLGGTYGGNPV 323
Query: 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIE- 591
AC AALA +E +D+++ R Q +T L +L +I + R +G + A +++
Sbjct: 324 ACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG 383
Query: 592 ----DPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPP 626
D E +K AA +++ G N + L+PP
Sbjct: 384 TTEPDAE----LTKALAAAAHAAGVIVLTCGTYGNVIRLLPP 421
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 125 bits (315), Expect = 9e-31
Identities = 107/393 (27%), Positives = 175/393 (44%), Gaps = 55/393 (13%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-----HKPVIKLSEKLS 307
G RYLD +S++ GH + I A+ Q +L LT + + L E+L+
Sbjct: 40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRL------TLTSRAFRNDQLAPLYEELA 93
Query: 308 SLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLGAL 364
+LT +K+ + GA AVE A+K + Y KG + + I +++HG TL
Sbjct: 94 ALTGSHKV---LPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLS-- 148
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF-DLEILLKKNHNKIA 423
I F T PD+R G R F D E L
Sbjct: 149 ----IVGFS-------------TDPDARG-GFGPFTPGF-RVVPFGDAEALEAAITPNTV 189
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
A ++EP +Q G+I+ + Y VRE+C N+ LI DEI G GRTGK A EH I
Sbjct: 190 AFLVEP-IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIE 248
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
D + K ++GG+ P+S V++ ++ + H ++ GNPLAC A A L+
Sbjct: 249 ADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQ------HGSTFGGNPLACAVARAALK 302
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
+ ++ +++ ++ + L S I + R +G++ A ++ + E +
Sbjct: 303 VLTEEGMIENAAEMGAYFLEGLRS-IRSNIVREVRGRGLMLAVEL------EPEAGGARQ 355
Query: 604 FVAALKNELLL--RPIGNTVYLMPPYILNKNEI 634
+ ALK LL +T+ L PP ++ + ++
Sbjct: 356 YCEALKERGLLAKDTHDHTIRLAPPLVITREQV 388
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 125 bits (315), Expect = 1e-30
Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 49/383 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ Y+D + V GH + + A++ QL++ H + + + L+E++++L
Sbjct: 39 GREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPI 98
Query: 313 KLGHC---FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-N 368
G F+ + GA AVE A+K++ Y G I ++HG TL +A+T
Sbjct: 99 D-GPAKTAFF-TTGAEAVENAVKIARAYTGRPGV------IAFGGAFHGRTLLTMALTGK 150
Query: 369 IQSFK--------EIYTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419
+ +K I+ +L N+ + ++ ++ + S + + I
Sbjct: 151 VAPYKVGFGPFPGSIFHALYPNELHGVSVEEALS-----SVERLFKADI---------AP 196
Query: 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+++AAI++EP +Q GG + ++ +R +C+ + I LIADE+ G RTGK FA E+
Sbjct: 197 DQVAAILLEP-IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEY 255
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539
++ PD + ++K + GG P+S V+ ++ ++ +Y+GNPLA AAL
Sbjct: 256 YDVKPDLITMAKSLGGGM-PISAVVGRAEVMDAPAPGG------LGGTYAGNPLAVAAAL 308
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIE- 597
A L++ ++ + QR + + L P I++ R +G + A V DP+ +
Sbjct: 309 AVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVA--VEFNDPQTGKP 366
Query: 598 --TFSKKFFVAALKNELLLRPIG 618
F++++ AL+ LLL G
Sbjct: 367 SPEFTRQYQRQALEEGLLLLSCG 389
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 123 bits (311), Expect = 4e-30
Identities = 107/392 (27%), Positives = 178/392 (45%), Gaps = 34/392 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G Y+D + V GH + + A++ QL + H + ++ + L+EK
Sbjct: 32 ATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEK 91
Query: 306 LSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 363
+++L + F+ + GA AVE A+K++ + + I +HG T
Sbjct: 92 INALAPVSGQAKTAFF-TTGAEAVENAVKIA------RAHTGRPGVIAFSGGFHGRTYMT 144
Query: 364 LAVT-NIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
+A+T + +K + Y + P D I+ +S + I R D+E +
Sbjct: 145 MALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEA------KQ 198
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
+AAII EP VQ GG + + +R +C+ + I +IADE+ G RTGK FA +H
Sbjct: 199 VAAIIFEP-VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA 257
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
PD + ++K + GG +PLS V+ I ++ +Y+GNPLA AA A
Sbjct: 258 DKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAPGG------LGGTYAGNPLAVAAAHAV 310
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKG-MIWA--FDVIIEDPEQIE 597
L I +K+++ +R +Q +++ L + P I R G MI A D +P
Sbjct: 311 LNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAA- 369
Query: 598 TFSKKFFVAALKNELLLR---PIGNTVYLMPP 626
++K AL LLL GN + + P
Sbjct: 370 -IAQKIQQRALAQGLLLLTCGAYGNVIRFLYP 400
>gnl|CDD|211333 cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an tRNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required. TruC
makes psi65 in tRNAs. This psi residue is not
universally conserved.
Length = 223
Score = 117 bits (296), Expect = 8e-30
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF-----DNLL--EIYPFLINVPRAGIVH 81
L+I+Y+D ++ +NK +GL+VH + + T F + L +YP VH
Sbjct: 1 LEILYQDEHLVAINKPSGLLVHRSELDRHETRFALQTLRDQLGQHVYP----------VH 50
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLD+ +SG+++ A S + L Q H V + YLA+V G +G I+ +
Sbjct: 51 RLDRPTSGVLLFALSSEVARKLGEQFTEHRVHKTYLAVVRGYVPESGTIDYPLSEELDKL 110
Query: 142 IKMTVSKNFNAKPALTYYERLATG---IINKKH----ISLIRCNLKTGRTHQIRVHMQWL 194
S + + A T+Y LA ++ K+ SL+ TGR HQ+R H+ +
Sbjct: 111 ADKFASDDKAPQAATTHYRLLAVEELPVVVGKYPTSRYSLVELTPHTGRKHQLRRHLAHI 170
Query: 195 GHGIVGDNLYGKK-----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
H I+GD +G + + +R L A +L HP +L I P D
Sbjct: 171 RHPIIGDTTHGDGRHNRFFREHFGCHRLLLAATRLEFTHPVTGERLL--IEAPLD 223
>gnl|CDD|182909 PRK11025, PRK11025, 23S rRNA pseudouridylate synthase C;
Provisional.
Length = 317
Score = 120 bits (302), Expect = 1e-29
Identities = 81/233 (34%), Positives = 120/233 (51%), Gaps = 29/233 (12%)
Query: 25 KVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGI 79
KV L I+YED+ I++LNK +G VH G LS + + L + P FL +
Sbjct: 87 KVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFL------EL 139
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP 138
VHRLD+++SG+++VAK + L QL+ +Q+ YLA+V G ++ A +++N
Sbjct: 140 VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKNI 199
Query: 139 HNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
+ V + KP+ T + ER A +L+R + TGRTHQIRVH Q+ G
Sbjct: 200 LQSGERIVRVSQEGKPSETRFKVEERYA-------FATLVRASPVTGRTHQIRVHTQYAG 252
Query: 196 HGIVGDNLYG-KKYSKSLI---FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
H I D+ YG +++ + L NR LHA L HP + RI P D
Sbjct: 253 HPIAFDDRYGDREFDQQLTGTGLNRLFLHAAALKFTHPGTGEVM--RIEAPLD 303
>gnl|CDD|219245 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain.
Biotin synthase (BioB), EC:2.8.1.6, catalyzes the last
step of the biotin biosynthetic pathway. The reaction
consists in the introduction of a sulphur atom into
dethiobiotin. BioB functions as a homodimer. Thiamin
synthesis if a complex process involving at least six
gene products (ThiFSGH, ThiI and ThiJ). Two of the
proteins required for the biosynthesis of the thiazole
moiety of thiamine (vitamin B(1)) are ThiG and ThiH
(this family) and form a heterodimer. Both of these
reactions are thought of involve the binding of
co-factors, and both function as dimers. This domain
therefore may be involved in co-factor binding or
dimerisation (Finn, RD personal observation).
Length = 93
Score = 111 bits (280), Expect = 3e-29
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA 918
PIN L I+GTPL L E ++TIA R+ +P + IR+S GR+ + Q F++
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 919 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
GANS F G L T+ N ++D +LK LG+
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLE 92
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 120 bits (301), Expect = 1e-28
Identities = 101/380 (26%), Positives = 191/380 (50%), Gaps = 37/380 (9%)
Query: 269 GHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328
G+S+ + KA++ Q+ ++H M+ + I+++EKL+ ++ + +G G+ AV+
Sbjct: 68 GYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVD 127
Query: 329 VALKMSFHYWYNKGFLNKKKFI-CLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYII 386
+A+K+S F ++ +I +YHG+TLGA +V Q S K ++ L+ I
Sbjct: 128 MAIKVS-------KFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWI 180
Query: 387 TTPDS-RN---INKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIM 439
P+ RN IN +E+ + LE + + +++AA+ EP +Q G+++
Sbjct: 181 PYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEP-IQGDAGIVV 239
Query: 440 YDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLP 499
+ K ++++ + + I L+ DE+ G GRTGK+FA E E+ PD + KG+ G +
Sbjct: 240 PPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MG 298
Query: 500 LSLVMTTDKIYNSIYYKNNINIFLHSHSY----SGNPLACCAALATLEIFNKDNILQRIS 555
LS V+ ++ + L S S + NP+ AA ATLEI ++N+L+
Sbjct: 299 LSGVIGRKELMD-----------LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNAL 347
Query: 556 QDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 614
+ + I K L + ++I + R KG++ +++ E+ + + K A + L+L
Sbjct: 348 KVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLIL 407
Query: 615 RP---IGNTVYLMPPYILNK 631
GN + + PP ++ K
Sbjct: 408 PSYGMFGNVIRITPPLVITK 427
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 119 bits (299), Expect = 1e-28
Identities = 81/318 (25%), Positives = 144/318 (45%), Gaps = 32/318 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLTQ 311
G+ YLD + V GH++ + AL Q KL H SN+ + P +KL+E+L + ++
Sbjct: 39 GREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT--SNVFYSAPPLKLAEELVTASR 96
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI-CLQNSYHGETLGALAVTNIQ 370
+ F + G A E A+K+ + ++G K+ I + S+HG TL A+ T
Sbjct: 97 FA-EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQP 155
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
++E Y L + D + + + +AA+++EP
Sbjct: 156 KYQEGYEPLPGGFRYVDFNDVEALEAAMAGGD-------------------VAAVMLEP- 195
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG++ +L VR +C+ ++ L+ DEI G GRTG FA ++ PD + L+
Sbjct: 196 IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLA 255
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
K + GG+ P+ ++ K+ ++ + H ++ GNPLA A L I
Sbjct: 256 KALGGGF-PIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLASPQI 308
Query: 551 LQRISQDMKKITKALTSL 568
+++ + L +L
Sbjct: 309 AANVARQSAALRAGLEAL 326
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 116 bits (292), Expect = 3e-27
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 27/284 (9%)
Query: 318 FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377
F G G AVE ALK+ K + + Q YHG + GAL++ K+
Sbjct: 131 FCGPTGTDAVEAALKLV------KTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLG 184
Query: 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI---AAIIIEPLVQCA 434
+LL + P G R + LE LL + + AA+I+E +VQ
Sbjct: 185 ALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILE-VVQGE 243
Query: 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 494
GG+I +L+ +R I I LI DEI G GRTGK FA EHA I PD + LSK I
Sbjct: 244 GGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI- 302
Query: 495 GGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNIL 551
GG LPL++V+ Y+ ++ + H+ ++ GN +A A ATL + +
Sbjct: 303 GGSLPLAVVV----------YREWLDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLA 352
Query: 552 QRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE 594
+ + +++ + L L +P++ + R +G++ +++ DP+
Sbjct: 353 EHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIV--DPQ 394
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 109 bits (275), Expect = 5e-27
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)
Query: 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA-----TRFCM 737
+ L I T GC C +C + + +E+++ + G +
Sbjct: 2 LALYIITRGCPRRCTFCSFPSLRGKL----RSRYLEALVREIELLAEKGEKEGLVGTVFI 57
Query: 738 GAAWRELKDRD-----LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792
G L + L+ I ++ K + + L E LK+ G++ +
Sbjct: 58 GGGTPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLG 117
Query: 793 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCGGIIGLS-ESRDQRAELIFQLA 849
+ + ++ I E+ L ++ +R G I + I+GL E+ + E + L
Sbjct: 118 VQSGDDEVLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177
Query: 850 NLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891
L P+ V I L GTPL + L+ A +
Sbjct: 178 ELG--PDRVSIFPLSPRPGTPLA--KMYKRLKPPTKEERAEL 215
>gnl|CDD|211325 cd02550, PseudoU_synth_Rsu_Rlu_like, Pseudouridine synthase,
Rsu/Rlu family. This group is comprised of eukaryotic,
bacterial and archeal proteins similar to eight site
specific Escherichia coli pseudouridine synthases: RsuA,
RluA, RluB, RluC, RluD, RluE, RluF and TruA.
Pseudouridine synthases catalyze the isomerization of
specific uridines in a n RNA molecule to pseudouridines
(5-ribosyluracil, psi) requiring no cofactors. E. coli
RluC for example makes psi955, 2504 and 2580 in 23S RNA.
Some psi sites such as psi1917 in 23S RNA made by RluD
are universally conserved. Other psi sites occur in a
more restricted fashion, for example psi2819 in 21S
mitochondrial ribosomal RNA made by S. cerevisiae Pus5p
is only found in mitochondrial large subunit rRNAs from
some other species and in gram negative bacteria. The E.
coli counterpart of this psi residue is psi2580 in 23S
rRNA. psi2604in 23S RNA made by RluF has only been
detected in E.coli.
Length = 154
Score = 104 bits (261), Expect = 6e-26
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSI 97
I++LNK +GLV HP + T+ ++ PR RLDK++SGL+++
Sbjct: 1 ILVLNKPSGLVCHPTDRDRDPTVVV-----RLDKLHGPRVHAAGRLDKDTSGLLLLTNDG 55
Query: 98 KSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVS-KNFNAKPAL 156
+ L ++++YL V G I R + A+
Sbjct: 56 RLQRRLTEP--RREIEKEYLVTVRGELD-----EEGIEDLATVRRGRLSGLVDEGVPLAV 108
Query: 157 TYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
T + +R LKTGRTHQIR H +G ++
Sbjct: 109 TKVRVIGEHGGT----GRLRLTLKTGRTHQIRRHCAAVGFPVL 147
>gnl|CDD|236659 PRK10158, PRK10158, 23S rRNA/tRNA pseudouridine synthase A;
Provisional.
Length = 219
Score = 104 bits (260), Expect = 3e-25
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L I+Y+D I+++NK +GL+ P G L + I + P+A VHRLD +S
Sbjct: 14 LVILYQDEHIMVVNKPSGLLSVP--GRLEEHKDSVMTRIQR---DYPQAESVHRLDMATS 68
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVS 147
G++VVA + + L Q + +++Y+A VWG P G+++ ++ + NR K V
Sbjct: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128
Query: 148 KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207
KPA T YE + + + + TGR+HQ+RVHM LGH I+GD Y
Sbjct: 129 YE-TGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184
Query: 208 YSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
++++ R LHA L + HP + ++
Sbjct: 185 EARAMA-PRLLLHAEMLTITHPAYGNSMTFK 214
>gnl|CDD|182971 PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.
Length = 257
Score = 99.0 bits (247), Expect = 6e-23
Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 33/243 (13%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF------DNLLE-IYPFLINVPRAGIVH 81
L+I+Y+D ++ +NK AG +VH + + T+F D + + ++ H
Sbjct: 2 LEILYQDEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIGQHVFT----------AH 51
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLD+ +SG++++A S + L Q + H +Q+ Y A+V G +++ + ++
Sbjct: 52 RLDRPTSGVLLMALSSEVARLLAQQFEQHQIQKTYHAIVRGWLMEEAVLDYPLKEE-LDK 110
Query: 142 I--KMTVSKNFNAKPALTYYERLAT-------GIINKKHISLIRCNLKTGRTHQIRVHMQ 192
I K ++ +PA+T+Y LAT G SL+ KTGR HQ+R HM
Sbjct: 111 IADKFA-REDKAPQPAVTHYRGLATVEMPVATGRYPTTRYSLVELEPKTGRKHQLRRHMA 169
Query: 193 WLGHGIVGDNLYG-----KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
L H I+GD +G + ++ +R LHA +L L HP L L + +
Sbjct: 170 HLRHPIIGDTKHGDLRQNRSLAEHFGCSRLMLHASELSLTHPFTGEPLTITAGLDETWQQ 229
Query: 248 LIT 250
L++
Sbjct: 230 LLS 232
>gnl|CDD|130682 TIGR01621, RluA-like, pseudouridine synthase Rlu family protein,
TIGR01621. This model represents a clade of sequences
within the pseudouridine synthase superfamily
(pfam00849). The superfamily includes E. coli proteins:
RluA, RluB, RluC, RluD, and RsuA. The sequences modeled
here are most closely related to RluA. Neisseria, among
those species hitting this model, does not appear to
have an RluA homolog. It is presumed that these
sequences function as pseudouridine synthases, although
perhaps with different specificity [Protein synthesis,
tRNA and rRNA base modification].
Length = 217
Score = 94.2 bits (234), Expect = 1e-21
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+I++ + +++NK G+ VH G LL+ + V + +VHRLDK +S
Sbjct: 2 FEILFTHPDFLLINKHPGISVHKDDGE------TGLLQEVATQLGVGQVWLVHRLDKMTS 55
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVS 147
G++++A + +S L +++ YLA+ P K G+I + ++ K+ S
Sbjct: 56 GILLLALNAESASELSQGFAKRKIEKTYLALSSKKPKKKQGLICGDMEKSRRGSWKLVNS 115
Query: 148 KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207
+ PA+T + + + L TG+THQ+RV M+ LG I+GD LYG
Sbjct: 116 QE---NPAITRFFSASA----ATGLRLFILKPHTGKTHQLRVAMKSLGSPILGDPLYGTT 168
Query: 208 YSKSLIFNRQALHAYKL 224
+R LHA+ L
Sbjct: 169 DES----DRGYLHAFAL 181
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 92.6 bits (231), Expect = 1e-19
Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 73/349 (20%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G Y+D + W + GH++ + +A++ QL + + + ++L+E
Sbjct: 45 AYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG---LSFGAPTELEVELAEL 101
Query: 306 LSSLTQ--YKLGHCFYGSDGA--SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 361
L K+ G++ A SA+ +A + + + K I + YHG +
Sbjct: 102 LIERVPSIEKVRFVNSGTE-ATMSAIRLA----------RAYTGRDKIIKFEGCYHGHSD 150
Query: 362 GAL-------AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414
L A S + + T + P N++ LE
Sbjct: 151 SLLVKAGSGAATLGSPSSPGVPADVAKHT--LVLP----------YNDLE-----ALEEA 193
Query: 415 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGC 468
++ + IAA+I+EP V G++ + +L+ +RE+ + LI DE +A+G
Sbjct: 194 FEEYGDDIAAVIVEP-VAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGG 252
Query: 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN------SIYYKNNINIF 522
A + + PD L K I GG LP+ +I +Y
Sbjct: 253 -------AQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVY-------- 296
Query: 523 LHSHSYSGNPLACCAALATLE-IFNKDNILQRISQDMKKITKALTSLIT 570
+ + SGNPLA A LATLE + ++ + +R+ +++ + L +
Sbjct: 297 -QAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAE 344
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 92.0 bits (229), Expect = 7e-19
Identities = 82/339 (24%), Positives = 145/339 (42%), Gaps = 65/339 (19%)
Query: 237 WRINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN--L 294
W + L D+ G+ YLD ++ V GH++ + A Q +L +N
Sbjct: 614 WGVWLIDN-------RGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLN----TNTRY 660
Query: 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 354
H ++ +E+L++ L F+ + G+ A +AL+++ + + I L +
Sbjct: 661 LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDA------IVLDH 714
Query: 355 SYHGETLGALAVTNIQSFKEIYTSLLNK---------TYIITTPDSRNINKGNSANEIAR 405
+YHG T + + +K N+ + PDS + E R
Sbjct: 715 AYHGTTTELID---LSPYK------FNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGR 765
Query: 406 --CAIFDLEI-LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK----LVRE---ICNNY 455
+I + A I E + AG + + + YL+ +VR +C
Sbjct: 766 RFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEG-YLREVYAMVRAAGGVC--- 821
Query: 456 NIHLIADEIAVGCGRTGK-FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY 514
IADE+ VG GR G ++A E + PD + + K I G+ P+ V+TT +I +S
Sbjct: 822 ----IADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIADS-- 874
Query: 515 YKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR 553
+ N + F +++ GNP++C LA L+I ++ LQR
Sbjct: 875 FDNGMEYF---NTFGGNPVSCAIGLAVLDIIEDED-LQR 909
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 88.5 bits (220), Expect = 3e-18
Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 60/357 (16%)
Query: 314 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK------KFICLQNSYHGETLGALAVT 367
L H F+ GA AVE ALK++F + K K + L+ ++HG + L++T
Sbjct: 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLT 169
Query: 368 NIQSFKEIYTSLLNKT-YI-------ITTPDSRNINKGNSANEIA---RCAIFDLEILLK 416
N KT I P R G E+ A+ +
Sbjct: 170 NTDP---------RKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFE 220
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
++ + IA I EP +Q GG + + +RE+C+ ++ LI DE+ G G TG +A
Sbjct: 221 RHPHDIACFIAEP-IQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWA 279
Query: 477 CEHAEIWPDFLCLSK-----GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHS----HS 527
+ + PD + K GI G D++ + N+F S +
Sbjct: 280 YQQLGVRPDIVAFGKKTQVCGIMAG-------RRVDEVED--------NVFAVSSRINST 324
Query: 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWA 585
+ GN + A LE+ +D +++ ++ + + L L P ++ N R +G++ A
Sbjct: 325 WGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCA 384
Query: 586 FDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAI 641
FD+ + + +L+ P G ++ P + EI A+
Sbjct: 385 FDL--PTTAD----RDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDAL 435
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 88.3 bits (219), Expect = 3e-18
Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 42/348 (12%)
Query: 314 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQNSYHGETLGAL 364
L H F+ GA AVE ALK +F + K N+ + + L+ ++HG + L
Sbjct: 103 LPHLFFIEGGALAVENALKTAFDW---KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTL 159
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA--RCAIFDLEILLKKNHNKI 422
++TN K + I + ++ N IA A+ + + I
Sbjct: 160 SLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDI 219
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I EP +Q GG + +L+ +R +C+ ++ LI DE+ G G TG +A + +
Sbjct: 220 ACFIAEP-IQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV 278
Query: 483 WPDFLCLSK-----GITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHSYSGNPLACC 536
PD + K GI G D++ ++++ + +N ++ GN +
Sbjct: 279 QPDIVAFGKKTQVCGIMAG-------RRVDEVADNVFAVPSRLN-----STWGGNLVDMV 326
Query: 537 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWAFDVIIEDPE 594
A LEI ++ ++ + L L P ++ N R +G++ AFD +
Sbjct: 327 RATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFD--LPSTA 384
Query: 595 QIETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAI 641
+ ++ + + +LL G ++ PP + + EI AI
Sbjct: 385 DRDEVIRQLY----REGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 87.4 bits (217), Expect = 5e-18
Identities = 92/408 (22%), Positives = 158/408 (38%), Gaps = 92/408 (22%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G Y+D + SW + GH++ + +A+K L E + I L+++
Sbjct: 40 AYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEAL---ERGTSYGAPTEAEILLAKE 96
Query: 306 LSSL--TQYKLGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
+ S + + G++ SAV +A +G+ + K I + YHG
Sbjct: 97 IISRVPSVEMVRFVNSGTEATMSAVRLA----------RGYTGRDKIIKFEGCYHGH--- 143
Query: 363 ALAVTNIQSFKEIYTSLLNK------TYIITTPDSRNINKGNSANEIARCAIFDLEIL-- 414
+ +LL K T + P S + + + + DLE L
Sbjct: 144 -------------HDALLVKAGSGAATLGL--PTSPGVPEDFAKLTLV-LPYNDLEALEE 187
Query: 415 -LKKNHNKIAAIIIEPLVQCAGGM--IMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 471
++ +IA +I+EP+ AG M + +L +R + Y LI DE+ G R
Sbjct: 188 VFEEYGEEIAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RV 243
Query: 472 GKFFACEHAEIWPDFLCLSKGITGGYLP----------LSLVMTTDKIYNSIYYKNNINI 521
A E+ + PD L K I GG LP + + +Y +
Sbjct: 244 ALGGAQEYFGVEPDLTTLGK-IIGGGLPVGAFGGRREIMERLAPEGPVYQA--------- 293
Query: 522 FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI---INFR 578
+ SGNPLA A LATL++ +++ + + + K++ + L+ ++ I +N R
Sbjct: 294 ----GTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN-R 348
Query: 579 QKGMIWAFDVIIEDPE----------QIETFSKKFFVAALKNELLLRP 616
M F + + E E F KFF L + L P
Sbjct: 349 VGSM---FSLFFTEEEVTNYADAKKSDTELF-AKFFHEMLDKGVFLPP 392
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 88.9 bits (221), Expect = 6e-18
Identities = 91/344 (26%), Positives = 163/344 (47%), Gaps = 47/344 (13%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L +G+ YLD +++ V + GH + + A Q + L S + V + SE+L+
Sbjct: 579 LFDMAGRSYLDMVNN--VTVLGHGHPRLAAAAARQWSLLN--TNSRFHYAAVAEFSERLA 634
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV- 366
+L L F + G+ A ++A++++ W G ++ + + +YHG T+ AV
Sbjct: 635 ALAPDGLDTVFLVNSGSEANDLAIRLA---WAASG---RRDVVSVLEAYHGWTVATDAVS 688
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDS-RNINKG-NSANEIARCAIFDLEILLKKNHNKIAA 424
T+I + + + + + +P++ R +G +SA + R + LE L +A
Sbjct: 689 TSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASG-RGLAG 747
Query: 425 IIIEPLVQCAGGMIMYDSIYLK----LVRE---ICNNYNIHLIADEIAVGCGRTGKFF-A 476
I EP+ AGG+ + YL+ VR +C IADE+ VG GR G +F
Sbjct: 748 FICEPVYGNAGGIALPPG-YLQQVYAAVRARGGVC-------IADEVQVGYGRLGHYFWG 799
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSI----YYKNNINIFLHSHSYSGNP 532
E + PD + ++KG+ G+ PL V+T +I ++ Y+ F S G+P
Sbjct: 800 FEQQGVVPDIITMAKGMGNGH-PLGAVITRREIAEALEAEGYF------F---SSTGGSP 849
Query: 533 LACCAALATLEIFNKDNILQRISQDMKKITKA-LTSLIT-HPKI 574
++C +A L++ ++ LQ ++ + KA L +L HP I
Sbjct: 850 VSCRIGMAVLDVL-REEKLQENARRVGDHLKARLEALADRHPLI 892
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 81.8 bits (202), Expect = 4e-16
Identities = 89/378 (23%), Positives = 153/378 (40%), Gaps = 70/378 (18%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI------- 300
L+ G R LD S G++N + KA ++ M + L ++P +
Sbjct: 52 LVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP------EMATTLINRPALGNFPSKD 105
Query: 301 ---KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK------GFLNKKKFIC 351
L E + + + G G+ A E+A K +F Y+ +K F ++ C
Sbjct: 106 WAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESC 165
Query: 352 LQN---------------SYHGETLGALAVT--------NIQSFKEIYTSLLNKTYIITT 388
+ N ++HG G+L+ T +I +F + Y
Sbjct: 166 MDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKY---- 221
Query: 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 448
P ++ + +A E RC + ++E L+KK H +AAII+EP +Q GG + + +
Sbjct: 222 PLEEHVKE--NAKEEQRC-LEEVEDLIKKWHKPVAAIIVEP-IQSEGGDNHASPDFFRKL 277
Query: 449 REICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGI-TGGYLPLSLVMT 505
R+I +N+ I DE+ G G TGKF+A EH + PD + SK T GY
Sbjct: 278 RDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFR 337
Query: 506 TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565
+K Y +++ G+P ++ + ++L+ ++ + L
Sbjct: 338 PNKPYR------------QFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL 385
Query: 566 TSLIT-HP-KIINFRQKG 581
L +P I N R KG
Sbjct: 386 EDLQKKYPEFIQNLRGKG 403
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily. Radical SAM
proteins catalyze diverse reactions, including unusual
methylations, isomerisation, sulphur insertion, ring
formation, anaerobic oxidation and protein radical
formation.
Length = 165
Score = 74.1 bits (182), Expect = 3e-15
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 687 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG----AAWR 742
I T GC C YC + + LS E ++ A++ G +
Sbjct: 2 IVTRGCNLRCTYCAFPSIRARG--KGRELSPEEILEEAKELARLGVEVVILTGGEPLLLP 59
Query: 743 ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD 802
+L + ++ E +I LET TL L+E LK+ GLD + +L +
Sbjct: 60 DLVELLERLLKLREGEGIRITLETNGTL--LDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 803 II-STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELI 845
II +E L L+ +R GI + I+GL E+ + E +
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETL 162
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 75.2 bits (185), Expect = 5e-14
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 66/335 (19%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSS 308
G Y+D + SW + GH++ + AL + K +L N+ + VI + S
Sbjct: 98 GNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVID---AVPS 154
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ + F S G A L+++ + + ++K I + YHG L
Sbjct: 155 VEMVR----FVNS-GTEACMGVLRLA------RAYTGREKIIKFEGCYHGHADSFL---- 199
Query: 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF-DLEI---LLKKNHNKIAA 424
+++ + T L PDS + K ++ + A + DLE L + N +IAA
Sbjct: 200 VKAGSGVATLGL--------PDSPGVPKAATSATL--TAPYNDLEAVKKLFEANKGEIAA 249
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP+V + G I+ +L+ +REI L+ DE+ G R A E+ I P
Sbjct: 250 VILEPVVGNS-GFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITP 307
Query: 485 DFLCLSKGITGGYLP----------LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534
D L K I GG LP + +V +Y + + SGNPLA
Sbjct: 308 DLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMY-------------QAGTLSGNPLA 353
Query: 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSLI 569
A + TL+ + + + KITK L I
Sbjct: 354 MTAGIHTLKRLQQPGTYEY----LDKITKKLIQGI 384
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 74.3 bits (184), Expect = 9e-14
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 53/238 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
+E L ++ ++IAA+I+EP AG G++ +L+ +RE+C+ + LI DE V
Sbjct: 187 VEELFEEYGDEIAAVIVEP---VAGNMGVVPPKPGFLEGLRELCDEHGALLIFDE--VMT 241
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 517
G R A + + PD L K I GG LP+ + +Y
Sbjct: 242 GFRVALGGAQGYYGVTPDLTTLGK-IIGGGLPVGAFGGRREIMEQLAPLGPVYQ------ 294
Query: 518 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 574
+ + SGNPLA A LATL++ + + + K++ + L P
Sbjct: 295 -------AGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLT 347
Query: 575 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+N R M F D + + E F +FF A L G VYL P
Sbjct: 348 VN-RVGSMFGLFFTDEPVTNYADAKKSDTERF-ARFFHAMLDE-------G--VYLAP 394
Score = 33.9 bits (79), Expect = 0.48
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
+ L G Y+D + SW + GH++ + +A+ K
Sbjct: 42 AYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK 81
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this
family generate radicals by combining a 4Fe-4S cluster
and S-adenosylmethionine (SAM) in close proximity. They
are characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster.
Mechanistically, they share the transfer of a single
electron from the iron-sulfur cluster to SAM, which
leads to its reductive cleavage to methionine and a
5'-deoxyadenosyl radical, which, in turn, abstracts a
hydrogen from the appropriately positioned carbon atom.
Depending on the enzyme, SAM is consumed during this
process or it is restored and reused. Radical SAM
enzymes catalyze steps in metabolism, DNA repair, the
biosynthesis of vitamins and coenzymes, and the
biosynthesis of many antibiotics. Examples are biotin
synthase (BioB), lipoyl synthase (LipA), pyruvate
formate-lyase (PFL), coproporphyrinogen oxidase (HemN),
lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide
reductase (ARR), and MoaA, an enzyme of the
biosynthesis of molybdopterin.
Length = 204
Score = 67.4 bits (164), Expect = 2e-12
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 689 TGGCTEDCGYC--PQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD 746
T GC +CG+C P S E IE ++ +AK G + L
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPES----PPEIEEILDIVLEAKERGVEVVILTGGEPLLYP 59
Query: 747 RDLDNIENMI--CEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 804
+ + + +I +ET +L E LK++GLD +LD+ + D I
Sbjct: 60 ELAELLRRLKKELPGFEISIET--NGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKI 117
Query: 805 --STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN 861
S ++ RL LK +R G+ + ++GL E + E + LA P+ V +
Sbjct: 118 RGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRS-PDRVSLF 176
Query: 862 NLVQIKGTPLYGSSILDPLE-FIRTIAV 888
L+ +GTPL ++ + P E +R IA
Sbjct: 177 RLLPEEGTPLELAAPVVPAEKLLRLIAA 204
>gnl|CDD|188472 TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydromethanopterin
hydrogenase cofactor biosynthesis protein HmdB. Members
of this archaeal protein family are HmdB, a partially
characterized radical SAM protein with an unusual
CX5CX2C motif. Its gene flanks the H2-forming
methylene-H4-methanopterin dehydrogenase gene hmdA,
found in hydrogenotrophic methanogens. HmdB appears to
act in in biosynthesis of the novel cofactor of HmdA
[Protein fate, Protein modification and repair, Energy
metabolism, Methanogenesis].
Length = 317
Score = 63.3 bits (154), Expect = 1e-10
Identities = 72/296 (24%), Positives = 112/296 (37%), Gaps = 42/296 (14%)
Query: 649 DEVINLFN-------LPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGC--TEDCGYC 699
DE + LF L D+ R + R +I+L + I T C C YC
Sbjct: 4 DEALKLFKSDNSRDLLKLFDIASRVRDYFRG-----KIKLTSTIHI-TNICHVRPKCLYC 57
Query: 700 -----PQSTHYNTEITATKILSIESVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIE 753
Y T E + AA+ + G R C GA +
Sbjct: 58 GFAAGTSKEGYYEPFRKTD----EEIKEAAKAIEESGIPRVSCSGAHG--------YGGK 105
Query: 754 NMICEVKKIGLETCLTLGM-----LNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR 807
+ + + T L L + L E L + G D NL+T + +L+ +
Sbjct: 106 EAVRAARIVKENTSLELLINVGADLTEESIEELARYGTDTICCNLETTNEELFKKLKPGE 165
Query: 808 DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867
+ E+R+ + V GI + G +IG+ ES + R E + L E +PI
Sbjct: 166 ELEDRIRVCEMVCKYGIELSSGLLIGIGESYEDRLEHLKFLKRFENLGE-IPIMGFNPYP 224
Query: 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923
GTP+ LE +TIAV R+ P IR++ +G F +AGA+++
Sbjct: 225 GTPMENHPPCSLLEQAKTIAVTRLMYPD--IRITVPTPTIGPENVQFALMAGADNV 278
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 61.4 bits (149), Expect = 1e-09
Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 33/308 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS---L 309
GK ++D SW + GHS+ I A++ E LT + I +E+L S L
Sbjct: 52 GKTFIDFCGSWGSLIHGHSHPKICDAIQ---QGAERGTSYGLTSEQEILFAEELFSYLGL 108
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
+K+ + S G A A++++ +G + I YHG A T +
Sbjct: 109 EDHKIR---FVSSGTEATMTAVRLA------RGITGRSIIIKFLGCYHGH-----ADTLL 154
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
Q TSL T+++ T + + N+ IF ++ H ++A +I EP
Sbjct: 155 QGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDF---QIF-QTVMNSLGH-RVAGVIFEP 209
Query: 430 LVQCAG-GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
+ CA G+++ +++ + + C I DE+ G R + A + PD
Sbjct: 210 I--CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITV 266
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
K I GG LP + V+ I + + + I + + SGNPLA A A++ + +
Sbjct: 267 YGK-ILGGGLPAAAVVAHKSIMDHLAPEGTI---FQAGTLSGNPLAMAAGKASINLCREQ 322
Query: 549 NILQRISQ 556
++S
Sbjct: 323 GFYTQLST 330
>gnl|CDD|211332 cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA
family. This group is comprised of bacterial proteins
assigned to the RluA family of pseudouridine synthases.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required. The
RluA family is comprised of proteins related to
Escherichia coli RluA.
Length = 246
Score = 57.7 bits (140), Expect = 6e-09
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 35/187 (18%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL---LEIYPFLINVPRAGIVHRLDKNS 87
I+++D +++ +K L V P ++ TL L P L P HRLD+ +
Sbjct: 41 ILHQDEHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTGN-PDL--TP----AHRLDRLT 93
Query: 88 SGLMVVAKSIKS---YIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
+GL++ +K ++ Y L + V + Y A+ +P L +R+ ++
Sbjct: 94 AGLVLFSKRPETRGAYQTLFAR---REVSKTYEAVAPYVPALTF---PLTVRS-----RI 142
Query: 145 TVSKNF------NAKP-ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
+ F +P A T E LA + L R + TG+THQ+RVHM LG
Sbjct: 143 VKGRGFFQAREVEGEPNAETRIELLA----RRGGWGLYRLSPHTGKTHQLRVHMAALGVP 198
Query: 198 IVGDNLY 204
I+ D Y
Sbjct: 199 ILNDPFY 205
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 58.5 bits (142), Expect = 8e-09
Identities = 88/414 (21%), Positives = 157/414 (37%), Gaps = 118/414 (28%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQL---------NKLEHVMLSNLTHKPVIKLS 303
G +Y+D ++++ + GH++ +I KA+ +LE + + L
Sbjct: 52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELE-IEFAK-------MLK 103
Query: 304 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE---- 359
E + SL + + F S G AV ++++ + + + K I YHG
Sbjct: 104 EAIPSLEKVR----FVNS-GTEAVMTTIRVA------RAYTGRTKIIKFAGCYHGHSDLV 152
Query: 360 ---------TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410
TLG TPDS + K + A E+ D
Sbjct: 153 LVAAGSGPSTLG-------------------------TPDSAGVPK-SIAQEVITVPFND 186
Query: 411 LEIL---LKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIA 465
+E L L K +++AA+++EP+V G G++ +L+ V E+ + +I DE+
Sbjct: 187 IEALKEALDKWGDEVAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVI 243
Query: 466 VGCGRTGKFF----ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI 521
T F A + + PD L K I GG LP+ Y +I
Sbjct: 244 -----TAFRFMYGGAQDLLGVEPDLTALGK-IIGGGLPIGA------------YGGRKDI 285
Query: 522 FLH---------SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-- 570
+ + +GNP + A +A LE+ ++ + +++ + + + +
Sbjct: 286 MEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKH 345
Query: 571 -HPKIINFRQKGMIWAF--DVIIEDPEQI-----ETFSKKFFVAALKNELLLRP 616
IN R KG + + D + + +Q E F KFF L + L P
Sbjct: 346 GITITIN-RLKGALTVYFTDEKVTNYDQAERSDGEAFG-KFFKLMLNQGINLAP 397
>gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofG subunit. This model represents either a
subunit or a domain, depending on whether or not the
genes are fused, of a bifunctional protein that
completes the synthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is
the chromophore of coenzyme F(420), involved in
methanogenesis in methanogenic archaea but found in
certain other lineages as well. The chromophore also
occurs as a cofactor in DNA photolyases in Cyanobacteria
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 322
Score = 55.8 bits (135), Expect = 4e-08
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 692 CTEDCGYCPQSTHYNT--EITATKILSIESVITAAQKAKSDGATR--FCMG--------A 739
C CGYC T E+ A +LS E V+ +K + G T F G
Sbjct: 14 CRNRCGYC---TFRRPPGELEAA-LLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPE 69
Query: 740 AWRELKDRDLDNIENMICEVKKIGLETCLTL-----GMLNENQAYRLKKV----GLDYYN 790
A L + D+ + E+ ++ LE L G+++ ++ RLK V GL
Sbjct: 70 AREWLAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLET 129
Query: 791 HNLDTSPKLYGDII----STRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 846
TS +L +D RL T+++ + I G +IG+ E+R++RAE +
Sbjct: 130 ----TSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLL 185
Query: 847 QLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 903
+ L+ + + V + N GTP+ E +RT+AVAR+ +P I +
Sbjct: 186 AIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILP-PDISIQVP 244
Query: 904 RKEMGETTQAFCFLAGAN 921
E + AG +
Sbjct: 245 PNLNREDYRLL-LDAGID 261
>gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related
uncharacterized enzymes [Coenzyme metabolism / General
function prediction only].
Length = 370
Score = 55.4 bits (134), Expect = 8e-08
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 34/257 (13%)
Query: 692 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDN 751
C DC +C LS E ++ ++A G T + E + L+
Sbjct: 69 CVNDCTFCAFYRKPGDP--KAYTLSPEEILEEVREAVKRGITEVLIVGG--EHPELSLEY 124
Query: 752 IENMICEVKKIGLETCLTL-------------GMLNENQAYRLKKVGLDYY-----NHNL 793
E + +K+ + + G+ E RLK+ GLD
Sbjct: 125 YEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILS 184
Query: 794 DTSPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851
+ I + E L + +GI ++G E+R+ R + + + +L
Sbjct: 185 EE----VRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDL 240
Query: 852 N---PYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE 906
+ G P + ++ IA+ARI + + ++ +
Sbjct: 241 QDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLR- 299
Query: 907 MGETTQAFCFLAGANSI 923
G L+GAN +
Sbjct: 300 DGVILAQAALLSGANDL 316
>gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM
protein. This model describes a radical SAM protein,
PylB, that is part of the three-gene cassette sufficient
for the biosynthesis of pyrrolysine (the twenty-second
amino acid) when expressed heterologously in E. coli.
The pyrrolysine next is ligated to its own tRNA and
incorporated at special UAG codons [Amino acid
biosynthesis, Other].
Length = 347
Score = 52.8 bits (127), Expect = 4e-07
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 15/250 (6%)
Query: 659 FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKI--LS 716
L + A++V KYF N + L L T C +C +C +Y A + +
Sbjct: 35 MEKLFYVAREVRNKYF-GNRVFLYGFLYFSTF-CKNNCAFC----YYRKSNHAIRRYRKT 88
Query: 717 IESVITAAQKAKSDGA--TRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGM 772
E + AA+ G MG D R + + ++ VK+ GL ++ G+
Sbjct: 89 REEIKAAARALADSGVHLIDLTMGEDPYYHNDPRGFERLAELVRMVKEETGLPVMISPGV 148
Query: 773 LNENQAYRLKKVGLDYYNHNLDTSPK-LYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831
++ +LK+ G ++Y +T + LY + + ++ R+N+ ++ + +G I G +
Sbjct: 149 VDNETLKKLKEAGANWYACYQETHDRELYNKLRVGQSFDERMNSKRHAKRIGYLIEEGIL 208
Query: 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891
G+ + + A + + +L+ + V + V KGTPL G + L +R IA+ R+
Sbjct: 209 TGVGDDIEDTAISLRGMKSLDA--DQVRVMTFVPQKGTPLEGKDVEGNLAELRIIAIMRL 266
Query: 892 TMPTSRIRMS 901
P I S
Sbjct: 267 LFPDRLIPAS 276
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 49.6 bits (119), Expect = 6e-06
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 411 LEILLKKNHNKIAAIIIEP-LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI-AVGC 468
LE L +AA++ EP + GM++ + + + +RE+ Y L+ DE +
Sbjct: 210 LEAALA--DGDVAAVLAEPAMTNI--GMVLPEPGFHEALRELTRRYGTLLVIDETHTISS 265
Query: 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHS 527
G G + H + PDFL + K I GG +P ++ + ++ K + HS
Sbjct: 266 GPGG--YTRAHG-LEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKAS---APPGHS 318
Query: 528 -----YSGNPLACCAALATLE 543
S N LA A ATL
Sbjct: 319 GIGTTLSANALAMAAMRATLA 339
>gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional.
Length = 323
Score = 48.3 bits (116), Expect = 1e-05
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 32/294 (10%)
Query: 644 TFNELDEVINLFNLPFNDLLF-RAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQS 702
T +E+ E+++ + LF A +V +KY +E+ L L+ + C +C YC
Sbjct: 2 TRDEILELLSNDDEEELKYLFKAADEVRKKYVG-DEVHLRGLIEF-SNYCRNNCLYCGLR 59
Query: 703 THYNTEITATKILSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVK 760
N I + LS E ++ A+KA G + G ++ I ++I E+K
Sbjct: 60 RD-NKNIERYR-LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEK----IADIIKEIK 113
Query: 761 KI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKN 818
K + L+LG + + K+ G D Y +T+ +LY + +ENR+ LK+
Sbjct: 114 KELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKD 173
Query: 819 VRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 877
++ +G + G ++GL ++ + A+ I L L+ + + I + TPL
Sbjct: 174 LKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGG 231
Query: 878 DPLEFIRTIAVARITMPTSRI-RMSA-------GRKEMGETTQAFCFLAGANSI 923
++ +A+ R+ +P + I +A GR E G AGAN +
Sbjct: 232 SLELTLKVLALLRLLLPDANIPATTALGTLNPDGR-EKG-------LKAGANVV 277
>gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed.
Length = 336
Score = 47.2 bits (113), Expect = 3e-05
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 692 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATR--FCMG--------AAW 741
C CGYC + + +LS E V ++ G T F G
Sbjct: 22 CRNRCGYC----TFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIK 77
Query: 742 RELKDRDLDNIENMICEVKKIGLETCL----TLGMLNENQAYRLKKV----GLDYYNHNL 793
+L + +I + ++ ++ LE L G+L + +LK+V GL
Sbjct: 78 EQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNASMGLMLEQ--- 134
Query: 794 DTSPKLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 850
TSP+L + +D E RL T++N + I G +IG+ E+ + RAE + +A
Sbjct: 135 -TSPRLLNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAE 193
Query: 851 LNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 896
L+ + + V I N G P+ E +R +A+AR+ +P
Sbjct: 194 LHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPD 242
>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional.
Length = 290
Score = 44.1 bits (105), Expect = 2e-04
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 777 QAYRLKKVGL---DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 831
Q RL V D +NHNL+T P+L + DY+ L+ L + + +I G +
Sbjct: 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLM 211
Query: 832 IGLSESRDQRAELIFQLANL 851
+GL E+ D E+I L +L
Sbjct: 212 LGLGETED---EVIETLRDL 228
>gnl|CDD|224108 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation,
ribosomal structure and biogenesis].
Length = 248
Score = 43.0 bits (102), Expect = 4e-04
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVV 93
E+ ++LNK G V T+FD L E P + G RLDK++ GL+++
Sbjct: 61 EERVYLLLNKPRGYVSSTEDDEGRPTVFDLLPERLPRKKRLFPVG---RLDKDTEGLLLL 117
Query: 94 AKSIKSYIHLVNQLKMHI---VQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNF 150
+ L ++L MH V+++YL ++ G + + + + +
Sbjct: 118 TNDGE----LAHRL-MHPSSEVEKEYLV------RVEGPVTEEDLEKLRKGVTL---DDG 163
Query: 151 NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
KPA L K+ S +R L GR Q+R
Sbjct: 164 ETKPAK--PASL--EKEPGKNNSWLRITLTEGRNRQVR 197
>gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism].
Length = 306
Score = 41.5 bits (98), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 781 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSESR 838
+ G D +NHN++T P+LY + YE L+ L+ + +G +I G ++GL E+
Sbjct: 168 VADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETD 227
Query: 839 DQ 840
++
Sbjct: 228 EE 229
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 40.6 bits (95), Expect = 0.003
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 781 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESR 838
L D YNHNL+T +L + Y L L+ + N+ G ++GL E+
Sbjct: 162 LLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETN 221
Query: 839 DQRAELIFQLAN 850
++ + + L +
Sbjct: 222 EEIKQTLKDLRD 233
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 39.9 bits (94), Expect = 0.005
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 45/179 (25%)
Query: 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIY--------LKLVREICNNYNIHLIA 461
LE LL++ A + I+ + ++ L + E+ Y L
Sbjct: 157 HLEALLEEARENGARRKL----------IVTEGVFSMDGDIAPLPELVELAEKYGALLYV 206
Query: 462 DEI-AVG-CGRTGKFFACEHAEIWP---DFL--CLSK--GITGGYLPLSLVMTTDKIYNS 512
DE AVG G G+ EH + P D + L K G +GGY+ S +
Sbjct: 207 DEAHAVGVLGPNGRGL-AEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID------ 259
Query: 513 IYYKNNINIFLHSHSYSGN--PLACCAALATLEIFNKD----NILQRISQDMKKITKAL 565
Y +N +S P AALA L I + LQ ++ + + KAL
Sbjct: 260 -YLRN----RARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 40.0 bits (94), Expect = 0.006
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 33/188 (17%)
Query: 384 YIITTPDSRNINKGNSANEIARCAIFD------LEILLKKNHNKIAAIIIEP--LVQCAG 435
+I TTP ++ G A+ A F LE L + + +IA +I+EP +
Sbjct: 148 FIGTTP----MSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATADEPQD 203
Query: 436 GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC-----GRTGKFFACEHAEIWPDFLCLS 490
G +L VR +C+ I DE+ G G + I PD C
Sbjct: 204 G-------FLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLY------GIVPDLSCFG 250
Query: 491 KGITGGYLPLSLVMTTDKI--YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
K + G+ +S + + + + + +FL S ++ A AA+AT+ I+ +
Sbjct: 251 KALGNGF-AVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE 309
Query: 549 NILQRISQ 556
++++R+ +
Sbjct: 310 DVIERLHE 317
>gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofH subunit. This enzyme, together with
CofG, complete the biosynthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the
chromophore of coenzyme F420. The chromophore is also
used in cyanobacteria DNA photolyases [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 343
Score = 39.6 bits (93), Expect = 0.007
Identities = 53/266 (19%), Positives = 93/266 (34%), Gaps = 50/266 (18%)
Query: 692 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDN 751
C CG+C +LS+E + A +A GAT C+ D D D
Sbjct: 49 CYGGCGFCAFRKRKGD--ADAYLLSLEEIAERAAEAWKAGATEVCIQGGI--HPDLDGDF 104
Query: 752 IENMICEVKKIGLETCL-------------TLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798
+++ VK+ + G+ E RLK+ G LD+ P
Sbjct: 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAG-------LDSMPG 157
Query: 799 LYGDI-------------ISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 845
+I +ST ++ + +K +GI + G E+ + + +
Sbjct: 158 TAAEILDDEVRKVICPDKLSTAEW---IEIIKTAHKLGIPTTATIMYGHVETPEHWVDHL 214
Query: 846 FQLANL----NPYPESVPINNLVQIKGTPLYGSSILDP----LEFIRTIAVARITMPTSR 897
L + + E VP+ + PLY + P E ++ A+ARI +
Sbjct: 215 LILREIQEETGGFTEFVPLPFVH--YNAPLYLKGMARPGPTGREDLKVHAIARILLHGLI 272
Query: 898 IRMSAGRKEMGETTQAFCFLAGANSI 923
+ A ++G+ GAN +
Sbjct: 273 DNIQASWVKLGKKLAQVALRCGANDL 298
>gnl|CDD|224769 COG1856, COG1856, Uncharacterized homolog of biotin synthetase
[Function unknown].
Length = 275
Score = 36.7 bits (85), Expect = 0.038
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 758 EVKKIGLETCLTL----GMLNENQAYRLKK-----VGLDYYNHNLDTSPKLYGDIISTRD 808
E+K + T L + G ++E+ +LK+ V LD+ N D ++Y S D
Sbjct: 79 ELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDN-DVIKRVYKLPKSVED 137
Query: 809 YENRLNTLKNVRNVGINICCGGIIGLSESR-DQRAELIFQLANLNPYPESVPINNLVQIK 867
Y L +L ++ GI + IGL + + I L N P+++ + L+
Sbjct: 138 Y---LRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYE--PDALVLVVLIPTP 192
Query: 868 GTPLYGSSILDPLEFIRTIAVARITMP 894
GT + S E I+ + AR P
Sbjct: 193 GTKMGNSPPPPVEEAIKVVKYARKKFP 219
>gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 37.3 bits (87), Expect = 0.041
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 812 RLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKG 868
RL L++ + + G +IG+ E+ +RAE +F + L+ + + V + N
Sbjct: 220 RLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPD 279
Query: 869 TPLYGSSILDPLEFIRTIAVARITM-PTSRI 898
T + G E + TIAVAR+ + P RI
Sbjct: 280 TAMAGVPDAGLEELLATIAVARLVLGPKMRI 310
>gnl|CDD|224101 COG1180, PflA, Pyruvate-formate lyase-activating enzyme
[Posttranslational modification, protein turnover,
chaperones].
Length = 260
Score = 36.1 bits (84), Expect = 0.063
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 685 LSIKTGGCTEDCGYC--PQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG--AA 740
LS+ GC C YC P+ + E++ + +S E ++ A ++S G F G
Sbjct: 38 LSVFLQGCNLRCPYCQNPEISQRGREVSG-EEVSPEVLVDKAFYSESGGGVTFSGGEPTL 96
Query: 741 WRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLD---TS 796
E +++ K+ GL L T G L L + LD LD
Sbjct: 97 QAEF-------ALDLLRAAKERGLHVALDTNGFLPPEALEELLPL-LDAV--LLDLKAFD 146
Query: 797 PKLYGDIISTRDYENRLNTLKNVRNVGINI 826
+LY + D E L L+ + ++G+++
Sbjct: 147 DELYRKLTG-ADNEPVLENLELLADLGVHV 175
>gnl|CDD|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis
protein A, archaeal. This model describes an archaeal
family related, and predicted to be functionally
equivalent, to molybdenum cofactor biosynthesis protein
A (MoaA) of bacteria (see TIGR02666) [Biosynthesis of
cofactors, prosthetic groups, and carriers,
Molybdopterin].
Length = 302
Score = 35.7 bits (83), Expect = 0.081
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 747 RDLDNIENMICEVKKIGLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDI 803
+DL I I +K G++ + T G+L E A +LK+ GLD N +LDT P+ Y I
Sbjct: 71 KDLIEI---IRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKI 127
Query: 804 ISTRDYENRLNTLKNVRNVGI 824
+ + +++ + G+
Sbjct: 128 TGRGALDRVIEGIESAVDAGL 148
>gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 312
Score = 35.0 bits (81), Expect = 0.14
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 808 DYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQI 866
D+ ++ +K +R GI +C I GL E+RD+ E +A L + + ++ L +
Sbjct: 166 DFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVV 223
Query: 867 KGTPL---YGSSILDPL---EFIRTIA-VARITMPT---SRIRMSAGRKEM 907
KGTP+ Y L L E++ + P RI A R +
Sbjct: 224 KGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTL 274
>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional.
Length = 289
Score = 34.3 bits (80), Expect = 0.23
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 780 RLKKV---GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGL 834
L V D +NHNL+T P+LY + DYE L LK + + I G ++GL
Sbjct: 147 ALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGL 206
Query: 835 SESRDQ 840
E+ ++
Sbjct: 207 GETDEE 212
>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 33.2 bits (76), Expect = 0.67
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 780 RLKKVGLDYYNHNLDTSPKLYGDIISTRD----YENRLNTLKNVRNVGINICCGGII--G 833
+ GLD + HN++T +L + RD Y+ L+ LK+ + + I G
Sbjct: 200 TVATSGLDVFAHNIETVERLQRIV---RDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG 256
Query: 834 LSESRDQ 840
L E+ ++
Sbjct: 257 LGETDEE 263
>gnl|CDD|234446 TIGR04043, rSAM_MSMEG_0568, radical SAM protein, MSMEG_0568 family.
Members of this protein family are radical SAM proteins
related to MSMEG_0568 from Mycobacterium smegmatis.
Members occur within 8-gene operons in species as
diverse as M. smegmatis, Rhizobium leguminosarum,
Synechococcus elongatus, and Sorangium cellulosum. The
function of the operon is unknown, but similarity of
MSMEG_0568 to some cofactor biosynthesis radical SAM
proteins suggests a similar biosynthetic function
[Unknown function, Enzymes of unknown specificity].
Length = 354
Score = 33.1 bits (76), Expect = 0.73
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 833 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892
GL +S D+ +L ++ YP VP V I GTPL G P F +A +
Sbjct: 270 GLGDSPDELVAGAERLIDMGVYPFVVP---FVPISGTPLEGHPAPSP-AF-----MADVY 320
Query: 893 MPTSRIRMSAGRKEMGETTQAFCFLAGANS 922
P +++ +AG +A C GA S
Sbjct: 321 QPVAKMLRAAGMS--SADIKAGCAKCGACS 348
>gnl|CDD|181655 PRK09110, PRK09110, flagellar motor protein MotA; Validated.
Length = 283
Score = 30.5 bits (70), Expect = 3.7
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Query: 554 ISQDMKKIT---KALTSLITHPK---------------IIN-FRQKGMIWAFDVIIEDPE 594
+ K I KAL L PK ++ RQ+GM+ A + IE+PE
Sbjct: 47 VGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALLYELLRKARQEGMM-ALEAHIENPE 105
Query: 595 QIETFSKKFFVAALKNELLLRPIGNTVYLM 624
+ F+K + LK+ L+ I + + LM
Sbjct: 106 ESPIFAK--YPKILKDHHLVDFICDYLRLM 133
>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated.
Length = 433
Score = 30.7 bits (70), Expect = 4.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 410 DLEILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 464
DLE +K N + IA I +I P G + Y L+ + +I Y++ +I DEI
Sbjct: 161 DLENKVKYNPS-IAGILLINP--DNPTGAV-YPKEILREIVDIAREYDLFIICDEI 212
>gnl|CDD|131440 TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase, gamma subunit.
The RNA polymerase gamma subunit, encoded by the rpoC1
gene, is found in cyanobacteria and corresponds to the
N-terminal region the beta' subunit, encoded by rpoC, in
other bacteria. The equivalent subunit in plastids and
chloroplasts is designated beta', while the product of
the rpoC2 gene is designated beta''.
Length = 619
Score = 30.7 bits (69), Expect = 4.6
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 18/93 (19%)
Query: 798 KLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSESRDQRAELIF-QLANLNPY 854
K++G ++D+E K VR+ GI +C CG + ++ESR +R + + +LA
Sbjct: 54 KIFG---PSKDWECHCGKYKRVRHRGI-VCERCG--VEVTESRVRRHRMGYIKLA----- 102
Query: 855 PESVPINNLVQIKGTPLYGSSILD-PLEFIRTI 886
P+ ++ +KG P Y S +LD PL + I
Sbjct: 103 ---APVTHVWYLKGIPSYVSILLDMPLRDVEQI 132
>gnl|CDD|211324 cd01291, PseudoU_synth, Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule
to pseudouridines (5-ribosyluracil, psi).
Pseudouridine synthases contains the RsuA/RluD, TruA,
TruB and TruD families. This group consists of
eukaryotic, bacterial and archeal pseudouridine
synthases. Some psi sites such as psi55,13,38 and 39
in tRNA are highly conserved, being in the same
position in eubacteria, archeabacteria and eukaryotes.
Other psi sites occur in a more restricted fashion, for
example psi2604in 23S RNA made by E.coli RluF has only
been detected in E.coli. Human dyskerin with the help
of guide RNAs makes the hundreds of psueudouridnes
present in rRNA and small nuclear RNAs (snRNAs).
Mutations in human dyskerin cause X-linked dyskeratosis
congenitas. Missense mutation in human PUS1 causes
mitochondrial myopathy and sideroblastic anemia
(MLASA).
Length = 87
Score = 28.3 bits (64), Expect = 5.4
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 72 INVPRAGIVHRLDKNSSGLMVVAK 95
I R G R DK + +V+
Sbjct: 21 IPPKRVGYAGRKDKRAVTTQLVSN 44
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion
protein)-Attachment protein (SNAP) REceptor domain;
these alpha-helical motifs form twisted and parallel
heterotetrameric helix bundles; the core complex
contains one helix from a protein that is anchored in
the vesicle membrane (synaptobrevin), one helix from a
protein of the target membrane (syntaxin), and two
helices from another protein anchored in the target
membrane (SNAP-25); their interaction forms a core which
is composed of a polar zero layer, a flanking
leucine-zipper layer acts as a water tight shield to
isolate ionic interactions in the zero layer from the
surrounding solvent.
Length = 60
Score = 27.5 bits (62), Expect = 5.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 745 KDRDLDNIENMICEVKKIGLET 766
+D +L+ +E I E+K+I L+
Sbjct: 4 RDEELEQLEASIGELKQIFLDL 25
>gnl|CDD|216693 pfam01774, UreD, UreD urease accessory protein. UreD is a urease
accessory protein. Urease pfam00449 hydrolyses urea into
ammonia and carbamic acid. UreD is involved in
activation of the urease enzyme via the
UreD-UreF-UreG-urease complex and is required for urease
nickel metallocenter assembly. See also UreF pfam01730,
UreG pfam01495.
Length = 204
Score = 29.8 bits (68), Expect = 5.5
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 902 AGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 948
GR MGE F L I +LL D + + D L
Sbjct: 98 LGRPAMGERFA-FGRLRSRLEIRRDGRLLLLDRLRLDPDDAALASPA 143
>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the
GT1 family of glycosyltransferases. wcfI in Bacteroides
fragilis has been shown to be involved in the capsular
polysaccharide biosynthesis.
Length = 365
Score = 29.9 bits (68), Expect = 7.3
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 689 TGGC---------TEDCGYCPQSTHYN 706
TGGC +CG CPQ Y
Sbjct: 90 TGGCHYPGGCDRYKTECGNCPQLGSYP 116
>gnl|CDD|223960 COG1029, FwdB, Formylmethanofuran dehydrogenase subunit B [Energy
production and conversion].
Length = 429
Score = 29.7 bits (67), Expect = 8.7
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 704 HYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 763
H + E+ I IE + + AK GA +G K R N+EN I VK +
Sbjct: 222 HRSEEVAGVPIEEIEELADMMKNAKF-GAIFVGLGLTSSRGKHR---NVENAINLVKDLN 277
Query: 764 LETCLTLGML 773
TL +
Sbjct: 278 EYAKFTLIPM 287
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 29.6 bits (67), Expect = 8.9
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 16/101 (15%)
Query: 410 DLEILLKKNHNKIAAIIIEPLVQCAGGM--IMYDSIYLKLVREICNNYNIHLIADEI-AV 466
LE LK+ ++ + L+ + ++ +NI L+ DE A
Sbjct: 131 ALEAALKEATEGNKVVLHT----SPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAG 186
Query: 467 GCGRTGKFFACEH--AEIWPDFLC--LSK-----GITGGYL 498
+ A AE + SK G GY+
Sbjct: 187 FVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYI 227
>gnl|CDD|188646 cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the
DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA)
of the DeoC family. DERA belongs to the class I
aldolases and catalyzes a reversible aldol reaction
between acetaldehyde and glyceraldehyde 3-phosphate to
generate 2-deoxyribose 5-phosphate. DERA is unique in
catalyzing the aldol reaction between two aldehydes, and
its broad substrate specificity confers considerable
utility as a biocatalyst, offering an environmentally
benign alternative to chiral transition metal catalysis
of the asymmetric aldol reaction.
Length = 203
Score = 29.0 bits (66), Expect = 9.1
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--------LET 766
+ E + A++A +DGA M LK D + + I V + LET
Sbjct: 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILET 125
Query: 767 CL 768
L
Sbjct: 126 GL 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.407
Gapped
Lambda K H
0.267 0.0846 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,180,728
Number of extensions: 4965497
Number of successful extensions: 4668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4329
Number of HSP's successfully gapped: 186
Length of query: 965
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 859
Effective length of database: 6,236,078
Effective search space: 5356791002
Effective search space used: 5356791002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.2 bits)