RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8199
(965 letters)
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 570 bits (1472), Expect = 0.0
Identities = 141/401 (35%), Positives = 218/401 (54%), Gaps = 15/401 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLV 96
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSVC 155
Query: 368 NIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ + ++ L + P SR E + L+ + ++IAA+I
Sbjct: 156 DPDNSMHSLWKGYLPENLFAPAPQSRM------DGEWDERDMVGFARLMAAHRHEIAAVI 209
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI 269
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
LCL K +TGG + LS +TT ++ +I F+H ++ GNPLAC AA A+L I
Sbjct: 270 LCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPLACAAANASLAILE 328
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+ Q+++ ++ + L + + R G I +
Sbjct: 329 SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN------MAALQKF 382
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 383 FVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 568 bits (1465), Expect = 0.0
Identities = 148/408 (36%), Positives = 230/408 (56%), Gaps = 9/408 (2%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
+ +GK Y D SS W+N+ GH ++ A+K QL K+ H L +T+ P +L+E L
Sbjct: 38 VKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLI 97
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
++ KL FY GA A+E+ALKM+F YW N G K+KFI ++N YHG+T+GA++V
Sbjct: 98 DISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVG 157
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427
+I+ F +Y L+ ++Y P G+ +C +L LL+++H +IAA+ I
Sbjct: 158 SIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLR-ELAQLLEEHHEEIAALSI 216
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
E +VQ A GMI+ YL VRE+C Y++ +I DE+A G GRTGK FACEH + PD +
Sbjct: 217 ESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM 276
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLEIFN 546
KGITGGYLP+++ T+ IY + Y N+ F H HSY+GN L C AL L +F
Sbjct: 277 AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE 336
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS------ 600
+NI++++++ KK+ L L P + + RQ G + + ++ E E +
Sbjct: 337 SENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAE-LVRSKETKEPYPADRRIG 395
Query: 601 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
K + + +L RP+G+ + +PP E+ M + + Q +E+
Sbjct: 396 YKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 568 bits (1466), Expect = 0.0
Identities = 125/400 (31%), Positives = 199/400 (49%), Gaps = 18/400 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
LDA+SSWW + GH + +++AL QL + HVM LTH+P +L++ L +T
Sbjct: 74 PIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPA 133
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS- 371
L F+ G+ +VEVA KM+ YW +G K++ + + YHG+T A+++ +
Sbjct: 134 GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGG 193
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
++T +L E L ++ ++AA+++EP+V
Sbjct: 194 MHSLWTDVLAAQVFAPQVPRDY----------DPAYSAAFEAQLAQHAGELAAVVVEPVV 243
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q AGGM +D YL +R+IC Y + LI DEIA G GRTG FA +HA + PD +C+ K
Sbjct: 244 QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGK 303
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
+TGGYL L+ + T + ++I +H ++ NPLAC ++A++E+ +
Sbjct: 304 ALTGGYLSLAATLCTADVAHTISA-GAAGALMHGPTFMANPLACAVSVASVELLLGQDWR 362
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
RI++ +T L + P + + R G I + + P AAL
Sbjct: 363 TRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIE--CDRPVD----LAVATPAALDRG 416
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
+ LRP N VY MPPYI EI +TSA+ + + +
Sbjct: 417 VWLRPFRNLVYAMPPYICTPAEITQITSAMVEVARLVGSL 456
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
transferase; HET: SAM DTB; 3.40A {Escherichia coli}
SCOP: c.1.28.1
Length = 369
Score = 521 bits (1343), Expect = e-178
Identities = 175/305 (57%), Positives = 231/305 (75%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T
Sbjct: 32 LSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKT 91
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE C
Sbjct: 92 GLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEAC 151
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI +C
Sbjct: 152 MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 211
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRTIA
Sbjct: 212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 271
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947
VARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +KL
Sbjct: 272 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 331
Query: 948 GINTR 952
G+N +
Sbjct: 332 GLNPQ 336
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 511 bits (1316), Expect = e-168
Identities = 95/453 (20%), Positives = 185/453 (40%), Gaps = 54/453 (11%)
Query: 252 SGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 310
S + DA +SWW + + + + + + HVM ++P +K +E L
Sbjct: 378 SLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGV 437
Query: 311 -QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN---------KKKFICLQNSYHGET 360
+ ++ +G++A+E+ALKM+F + K I L+ SYHG+T
Sbjct: 438 GKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT 497
Query: 361 LGALAVTNIQSFKEIYTSLL----------------NKTYIITTPDSRNINKGNSANEIA 404
LGA+ + N ++ I+ P+S + +
Sbjct: 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTS 557
Query: 405 RCAIFDL--------------------EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIY 444
R IFD E + + A+IIEP++ AGGM M D ++
Sbjct: 558 RDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF 617
Query: 445 LKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVM 504
+++ C N I +I DE+ G R G E PD C +K +TGG +PL++ +
Sbjct: 618 QRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTL 677
Query: 505 TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMKKI 561
TD +++S + + LH HSYS + + C A ++ F + ++++
Sbjct: 678 ATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL 737
Query: 562 --TKALTSLITHPKIINFRQKGMIWAFDV--IIEDPEQIETFSKKFFVAALKNELLLRPI 617
+ + + +H + G ++A ++ + ++K + ++ + RP+
Sbjct: 738 WDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL 797
Query: 618 GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
GN +YLM + + + + +++ E +
Sbjct: 798 GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNR 830
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 400 bits (1030), Expect = e-130
Identities = 118/415 (28%), Positives = 192/415 (46%), Gaps = 19/415 (4%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
+ GKRYLD +S W G+ + +A QL L + +S +H+P IKL+EKL+
Sbjct: 43 VEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS-QSHEPAIKLAEKLN 101
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
F+ + G+ A E A K++ Y+ KG ++ KF+ YHG T+ +A T
Sbjct: 102 EWLG-GEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAAT 160
Query: 368 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 425
+ Y + +T PD R C +++ ++ + IAA
Sbjct: 161 GQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVK-EVDRVMTWELSETIAAF 219
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP + GG++M Y+K V E C + LI+DE+ G GRTGK F + ++ PD
Sbjct: 220 IMEP-IITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPD 278
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ ++KGIT YLPLS +IY + K F H +++ GNP AC AL LEI
Sbjct: 279 IITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETF----S 600
+N+++R +Q + + L I HP + + R KG++ + ++ D E E
Sbjct: 339 ENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE-LVNDKETKEPIDNDKI 397
Query: 601 KKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
A + L++ G N + L PP +++ EI + + +
Sbjct: 398 ASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 380 bits (978), Expect = e-123
Identities = 104/408 (25%), Positives = 187/408 (45%), Gaps = 7/408 (1%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L+ G++ D++S W GH+ I +A+ QL+ L++ H +L+EK++
Sbjct: 44 LVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKIT 103
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
LT L H F+ G+ A+KM YW KG K K I YHG + ++
Sbjct: 104 DLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLG 163
Query: 368 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 425
+ ++++ + + N E +L ++ + + IAA+
Sbjct: 164 GVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAV 223
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
+EP + + G+++ YLK REICN +NI L+ DE+ G GRTG F + + PD
Sbjct: 224 FVEP-LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPD 282
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIY---YKNNINIFLHSHSYSGNPLACCAALATL 542
+C++K +T G +P+ V+ + +IY + F H ++YS +P+AC A LA L
Sbjct: 283 LMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAAL 342
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602
+ K+N++Q +++ KAL + +I+ R G+ A I +
Sbjct: 343 CLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQ-IAPRDGDAIVRPFE 401
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+A K +R G+T+ P + ++ + A+ + N+L +
Sbjct: 402 AGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKLLD 449
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 372 bits (958), Expect = e-119
Identities = 100/438 (22%), Positives = 193/438 (44%), Gaps = 19/438 (4%)
Query: 226 LIHPKNNLKLKWRINLPDDISK-----LITFSGKRYLDAISSWWVNLFGHSNSYINKALK 280
++ ++ ++ ++ +G+RYLDA S W + G + + A K
Sbjct: 29 SLYGFTDMP-SLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAK 87
Query: 281 NQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 339
Q + + + LSEKL ++ + G FY + G+ A + +KM +
Sbjct: 88 AQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHA 147
Query: 340 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGN 398
+G K+K + N+YHG T + ++T + ++ L +T P R +G
Sbjct: 148 AEGKPQKRKILTRWNAYHGVTAVSASMTGK-PYNSVFGLPLPGFVHLTCPHYWRYGEEGE 206
Query: 399 SANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457
+ + +LE + ++ + IA EP V AGG+I Y + + I Y+I
Sbjct: 207 TEEQFVARLARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDI 265
Query: 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YK 516
+I+DE+ G GRTG + C + PD + SK +T G+ P+ V+ ++ +
Sbjct: 266 PVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAI 325
Query: 517 NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 576
I F H + SG+P+ C AL +++ + + + + + + + L + P I
Sbjct: 326 EAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGE 385
Query: 577 FRQKGMIWAFDVIIEDPEQIETF------SKKFFVAALKNELLLRPIGNTVYLMPPYILN 630
+R G +WA + ++D F S++ L+ RP+G +V L PP+IL
Sbjct: 386 YRGIGFMWALE-AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILT 444
Query: 631 KNEIQHMTSAIFQTFNEL 648
+ ++ M + + +++
Sbjct: 445 EAQMDEMFDKLEKALDKV 462
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 349 bits (897), Expect = e-111
Identities = 92/442 (20%), Positives = 182/442 (41%), Gaps = 21/442 (4%)
Query: 226 LIHPKNNLKLKWRINLPDDI------SKLITFSGKRYLDAISSWWVNLFGHSNSYINKAL 279
HP ++ R P I + +G++ +DA + + G+ I A+
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAI 76
Query: 280 KNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW 338
Q L + + I L++ + + ++G G+ A E +K+ ++Y
Sbjct: 77 ATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYN 136
Query: 339 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKG 397
G KKK I YHG + ++T + F + P R ++
Sbjct: 137 NVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRS 196
Query: 398 NSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456
S + ++ LE ++L + IAA I EP + GG++ + Y + ++ + Y+
Sbjct: 197 MSEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLKKYD 255
Query: 457 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-Y 515
+ L+ADE+ G GR G F +H I PD + ++KG+T Y PLS V+ D+++ +
Sbjct: 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQG 315
Query: 516 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKI 574
+ + H +YS +P+ A +A LE+ ++ +++ + L ++ H +
Sbjct: 316 SDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNV 375
Query: 575 INFRQKGMIWAFDVIIEDPEQIETF------SKKFFVAALKNELLLRPI--GNTVYLMPP 626
R GM+ A + + D + F + A + ++ R + G+ + PP
Sbjct: 376 GEVRGDGMLAAVE-FVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPP 434
Query: 627 YILNKNEIQHMTSAIFQTFNEL 648
L + + + S +
Sbjct: 435 LCLTREQADIVVSKTADAVKSV 456
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 328 bits (842), Expect = e-103
Identities = 104/415 (25%), Positives = 188/415 (45%), Gaps = 15/415 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKL 306
L G + +D ++ W G+ +A + Q+ +L TH V++LS L
Sbjct: 44 LWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLL 103
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ +T FY + G+ +V+ ++M YW +G KK I N YHG T+G ++
Sbjct: 104 AEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASL 163
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 425
++ E + I P K + +E A LE +L+ +K+AA
Sbjct: 164 GGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAF 223
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
+ EP +Q AGG+I+ + Y + IC Y++ L+ADE+ G GRTG++F +H PD
Sbjct: 224 VGEP-IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD 282
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+KG++ GYLP+ V ++ + F H +YSG+P+ A A +
Sbjct: 283 LFTAAKGLSSGYLPIGAVFVGKRVAEGL---IAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 546 NKDNILQRISQDM-KKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETF---- 599
+ I+QR+ D+ + K + + + R GM+ AF ++++ + E F
Sbjct: 340 RDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFT-LVKNKAKRELFPDFG 398
Query: 600 --SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVI 652
+N L++R G+ + PP ++ + E+ M + + E ++ +
Sbjct: 399 EIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTL 453
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 327 bits (840), Expect = e-102
Identities = 105/412 (25%), Positives = 193/412 (46%), Gaps = 14/412 (3%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G+R +D + W + G+ I A+ +Q L + + P +L+EK+++LT
Sbjct: 53 GRRLIDGPAGMWCAQV-GYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTP 111
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L F+ + G++AV+ AL+ S Y G KK+ I + YHG T A T
Sbjct: 112 GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG 171
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPL 430
+ ++ +++P+ R+ S + + E + + IAA + EP
Sbjct: 172 NWPNFDIAQDRISFLSSPNPRH-AGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP- 229
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCL 489
+ +GG+I+ + Y + IC ++I I+DE+ G GR G++FA E + PD +
Sbjct: 230 ILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITF 289
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLACCAALATLEIFNKD 548
+KG+T GY+PL + ++ + I +N F + ++YS P+AC AALA +E+ ++
Sbjct: 290 AKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE 349
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF------SKK 602
I+ + + AL SL P + R G++ + DP + + + K
Sbjct: 350 GIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQ-CLLDPTRADGTAEDKAFTLK 408
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVINL 654
+ L++RP+G+ + PP I+++ +I M + + Q E+ L
Sbjct: 409 IDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGL 460
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Length = 348
Score = 322 bits (827), Expect = e-102
Identities = 68/323 (21%), Positives = 133/323 (41%), Gaps = 25/323 (7%)
Query: 644 TFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQST 703
T L E +++ + FN+ LF+ R+ + +E+ + ++ + C ++C YC
Sbjct: 16 TREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYCGLR- 73
Query: 704 HYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 763
N + + ++ E ++ A+ A GA + + D+ I +++ E+KK+G
Sbjct: 74 RDNKNLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDV--ISDIVKEIKKMG 130
Query: 764 LETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNV 822
+ L+LG + K+ G D Y +T+ P L+ + +ENRLN L ++ +
Sbjct: 131 VAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL 190
Query: 823 GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 881
G G ++GL ++ D + + L + + V I + TPL D
Sbjct: 191 GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDF--DMVGIGPFIPHPDTPLANEKKGDFTL 248
Query: 882 FIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF--------------YGD 927
++ +A+ RI +P S I + + + GAN I Y
Sbjct: 249 TLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPG 308
Query: 928 KLLTTDNTKTNDDS--KLLKKLG 948
K+ + K+++ LG
Sbjct: 309 KICVFEKDTACIPCVMKMIELLG 331
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 321 bits (824), Expect = e-102
Identities = 102/238 (42%), Positives = 142/238 (59%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 81 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 141 TTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 200
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
KPA+T+Y E + + +R L+TGRTHQIRVHM + H +VGD +
Sbjct: 201 HP--MGKPAVTHYRIMEHF-------RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 251
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 309
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase,
[4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM
MD0; 1.50A {Methanosarcina barkeri}
Length = 350
Score = 320 bits (822), Expect = e-101
Identities = 54/339 (15%), Positives = 124/339 (36%), Gaps = 27/339 (7%)
Query: 629 LNKNEIQHMTSAIFQ----TFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVL 684
+ +E + + + T N+L +++L + + L+ A + R ++ N + L
Sbjct: 5 MALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCF 64
Query: 685 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWREL 744
+ C C +C + L++E + + K G +
Sbjct: 65 IYFS-TYCKNQCSFCYYNCRNEINR---YRLTMEEIKETCKTLKGAGFHMVDLTMGEDPY 120
Query: 745 KDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGD 802
D + ++ VK+ GL ++ G+++ + ++ G ++ +T +LY
Sbjct: 121 YYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRK 180
Query: 803 IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 862
+ + ++ R+N + + G + G + G+ + + ++ P+ V +
Sbjct: 181 LRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVRVMT 238
Query: 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922
+ +GTPL G L ++ I+V R+ P I S + + AGAN
Sbjct: 239 FLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGIDG--MVLRLNAGANI 296
Query: 923 IFYG-------------DKLLTTDNTKTNDDSKLLKKLG 948
+ D+ L + + L+ +G
Sbjct: 297 VTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMG 335
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 322 bits (828), Expect = e-100
Identities = 112/437 (25%), Positives = 194/437 (44%), Gaps = 23/437 (5%)
Query: 226 LIHPKNNLKLKWRINLPDDISK-----LITFSGKRYLDAISSWWVNLFGHSNSYINKALK 280
+HP + I++ L G+ LDA++ W G+ + +
Sbjct: 23 HLHPFSANN-ALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAA 81
Query: 281 NQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 339
Q+ +L + TH P I L++KL+ L L H F+ G+ A + ++M YW
Sbjct: 82 RQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQ 141
Query: 340 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399
NKG K I +N+YHG T+ + A+ + + + +I +
Sbjct: 142 NKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDP 201
Query: 400 ANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 458
A +LE +L+ N++AA I EP VQ AGG+I+ Y ++ IC+ Y+I
Sbjct: 202 EEFGLARAR-ELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKYDIL 259
Query: 459 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 518
LIADE+ G GRTG +F + I P + ++KG++ GY P+ + D++ + I
Sbjct: 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVI----G 315
Query: 519 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI-TKALTSLITHPKIINF 577
+ F H ++YSG+P+A AL L I ++NIL + + +L HP +
Sbjct: 316 KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA 375
Query: 578 RQKGMIWAFDVIIEDPEQIETF-------SKKFFVAALKNELLLRPIGNTVYLMPPYILN 630
+ GM+ + + + F N L++R +G+ + + PP ++
Sbjct: 376 KIVGMMASIA-LTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 434
Query: 631 KNEIQHMTSAIFQTFNE 647
EI M I ++ +E
Sbjct: 435 PAEIDEMFVRIRKSLDE 451
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 319 bits (821), Expect = e-100
Identities = 100/417 (23%), Positives = 185/417 (44%), Gaps = 27/417 (6%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L +G+RYLD S V GH + + + + Q +L V S + + + + +L+
Sbjct: 23 LYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ S G+ A E A+K++ Y +G + K I SYHG +LG+LA +
Sbjct: 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAAS 142
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAII 426
+ + +E+YT L+ P + A A A L +L ++ +AA +
Sbjct: 143 GMGARRELYTPLMRPEAWPKLPK------PDPARNGAEDAE-GLRALLEREGPETVAAFM 195
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE-IWPD 485
EP+V + + Y + VR+IC+ I IADE+ G GR G A + PD
Sbjct: 196 AEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD 255
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L KG+ GY PL+ ++ ++Y ++ F+H +Y+G+P++ A L+ L+I
Sbjct: 256 IAVLGKGLAAGYAPLAGLLAAPQVYETV--MGGSGAFMHGFTYAGHPVSVAAGLSVLDIV 313
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETF----- 599
++++ + ++ L +L P+++ R G++ + D + F
Sbjct: 314 EREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVL--GDLATGQAFETPGI 371
Query: 600 SKKFFVAALKNELLLRP--------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + AALK L+ P G+ + L PP + E+ + + + ++
Sbjct: 372 ASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA
complex; HET: FOU; 2.05A {Escherichia coli}
Length = 217
Score = 284 bits (728), Expect = 9e-90
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
L I+Y+D+ I+++NK +GL+ P + + P+A VHRLD
Sbjct: 10 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHRLDMA 64
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMT 145
+SG++VVA + + L Q + +++Y+A VWG P G+++ ++ + NR K
Sbjct: 65 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 124
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V KPA T YE + + + + TGR+HQ+RVHM LGH I+GD Y
Sbjct: 125 VCYE-TGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 180
Query: 206 KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
++++ R LHA L + HP + ++
Sbjct: 181 SPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAPAD 216
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine
syntase, RNA binding, lyase; 2.00A {Escherichia coli}
SCOP: d.265.1.3 PDB: 1xpi_A
Length = 228
Score = 282 bits (723), Expect = 7e-89
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
I+YED+ I++LNK +G VH G G + + L + P +VHRLD+++S
Sbjct: 2 DVIMYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP---EARFLELVHRLDRDTS 57
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
G+++VAK + L QL+ +Q+ YLA+V G + A +++N + V
Sbjct: 58 GVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR 117
Query: 148 KNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+ KP+ T + ER +L+RC+ TGRTHQIRVH Q+ GH I D+ Y
Sbjct: 118 VSQEGKPSETRFKVEERY-------AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY 170
Query: 205 G-KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
G +++ + L NR LHA L HP ++ + + + + +
Sbjct: 171 GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 222
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 277 bits (711), Expect = 2e-84
Identities = 94/413 (22%), Positives = 178/413 (43%), Gaps = 27/413 (6%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S + G+ LD S + GH + I + KL+H+ S + +PV+ L+ +
Sbjct: 35 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATR 93
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L+++T L S GA + E A++M+ K + + S+HG T A +
Sbjct: 94 LANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAAS 147
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
T + ++ ++ I P + R + N A + + +++ +++ +AA
Sbjct: 148 ATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAA 206
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
I EP + +GG+I Y+ ++ C + LI DE G GRTG FAC+ + P
Sbjct: 207 FIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 265
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L LSK + G PL+ ++T+ I + +L ++ +PL L L++
Sbjct: 266 DILTLSKTLGAGL-PLAAIVTSAAIEERAHELG----YLFYTTHVSDPLPAAVGLRVLDV 320
Query: 545 FNKDNILQRISQDM-KKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIE---TF 599
+D ++ R + M ++ + L L+ I + R +G++ + I++D E
Sbjct: 321 VQRDGLVAR-ANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE-IVKDRRTKEPADGL 378
Query: 600 SKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
K + L + + G + PP ++++EI S + Q
Sbjct: 379 GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 255 bits (654), Expect = 5e-76
Identities = 101/407 (24%), Positives = 176/407 (43%), Gaps = 28/407 (6%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G R +D S V G+S + +A+++Q+ H ++ + + E+L+ LT
Sbjct: 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPV 119
Query: 313 K-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NIQ 370
+ + G+ AVE A+K++ + +K + ++YHG T +A+T +
Sbjct: 120 RGDKRSALFNSGSEAVENAVKIA------RSHTHKPAVVAFDHAYHGRTNLTMALTAKVM 173
Query: 371 SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIII 427
+K+ + + Y R+ G A ++ K + +AA++I
Sbjct: 174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVI 233
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EP +Q GG I+ +L + + C ++ IADE+ G RTG FACEH I PD +
Sbjct: 234 EP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI 292
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
+KGI GG LPLS V +I +S + +Y GNP+AC AALAT+E
Sbjct: 293 VTAKGIAGG-LPLSAVTGRAEIMDSPHVSG------LGGTYGGNPIACAAALATIETIES 345
Query: 548 DNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKF 603
+ ++ R Q K + L L +I + R +G + A + + E +K
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAME--LVKAGTTEPDADLTKAL 403
Query: 604 FVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
A +++ G N V +PP + + + + +
Sbjct: 404 CAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 254 bits (650), Expect = 9e-76
Identities = 97/406 (23%), Positives = 177/406 (43%), Gaps = 39/406 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
S++ GK Y+D V GH + + +ALK+Q L H SN+ T++P ++L
Sbjct: 49 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT--SNVFTNEPALRLGR 106
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL T + + G A E A K++ HY + K K I N++HG +L +
Sbjct: 107 KLIDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTV 164
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+V + + + D ++ DL + + A
Sbjct: 165 SVGGQPKYSDGFGPKP--------ADIIHVPFN------------DLHAVKAVMDDHTCA 204
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+++EP +Q GG+ +LK +R++C+ + L+ DE+ G GRTG FA H + P
Sbjct: 205 VVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP 263
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L +K + GG P+S ++TT +I ++ + + H +Y GNPLAC A A +I
Sbjct: 264 DILTSAKALGGG-FPVSAMLTTQEIASAFHVGS------HGSTYGGNPLACAVAGAAFDI 316
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
N +LQ I ++ + L ++ + R G++ E + + ++ F
Sbjct: 317 INTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----AELKPKYKGRARDF 372
Query: 604 FVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
A + +++ G + + P ++ + +I Q ++
Sbjct: 373 LYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 253 bits (649), Expect = 3e-75
Identities = 79/414 (19%), Positives = 157/414 (37%), Gaps = 36/414 (8%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSS 308
G+RYLD + + G + + + ++ + S++ + + E +
Sbjct: 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFAR 112
Query: 309 LTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLN------KKKFICLQNSYHGETL 361
+ L H F+ GA AVE ALK +F + + + + L+ ++HG +
Sbjct: 113 VLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSG 172
Query: 362 GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
L++TN + + I P R + + A+ + +
Sbjct: 173 YTLSLTNTKPTITARFPKFD-WPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHD 231
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
IA + EP +Q GG + + +RE+C+ ++ LI DE+ GCG TG +A + +
Sbjct: 232 IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL----HSHSYSGNPLACCA 537
+ PD + K + + N+F + ++ GN
Sbjct: 291 VAPDIVAFGKKTQVCGVMAGRRVDEVA----------DNVFAVPSRLNSTWGGNLTDMVR 340
Query: 538 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWAFDVIIEDPEQ 595
A LE+ + + +R Q K + L L P ++ + R +G++ AF +
Sbjct: 341 ARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFS--LPTTAD 398
Query: 596 IETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + +++ P G +TV PP ++ EI +A+ +
Sbjct: 399 ----RDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 252 bits (646), Expect = 3e-75
Identities = 109/408 (26%), Positives = 185/408 (45%), Gaps = 31/408 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ YLD V GH + + A++ QL KL H L ++P ++L E ++
Sbjct: 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99
Query: 313 KLGHC-FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+ G+ AVE A+K++ + I +YHG T LA+T +
Sbjct: 100 DFAKKTLLVTTGSEAVENAVKIARAA------TKRSGTIAFSGAYHGRTHYTLALTGKVN 153
Query: 372 -FKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ + Y P I++ ++ I R IF + IAAI+IEP
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKNDA----APEDIAAIVIEP 207
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E + PD
Sbjct: 208 -VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF 266
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K I GG PL+ V ++ +++ +Y+GNP+AC AAL L++F ++N
Sbjct: 267 AKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGNPIACVAALEVLKVFEQEN 319
Query: 550 ILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKFFV 605
+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + + +
Sbjct: 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLTAEIVA 378
Query: 606 AALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
A L+L P N + ++ P + +I+ I Q F+E +
Sbjct: 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 426
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 251 bits (643), Expect = 1e-74
Identities = 93/411 (22%), Positives = 168/411 (40%), Gaps = 36/411 (8%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-Q 311
G+ +D +W G+ + I A+ + + ++ P + L+E+L +
Sbjct: 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPG 101
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
++G G+ A E A + + I +YHG T+G++A +
Sbjct: 102 EGTHKIWFGHSGSDANEAAYRAI------VKATGRSGVIAFAGAYHGCTVGSMAFSGHSV 155
Query: 372 FKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+ + ++ PD R + + I E L I A IEP
Sbjct: 156 QA--DAAKADGLILLPYPDPYRPYRNDPTGDAILT---LLTEKLAAVPAGSIGAAFIEP- 209
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG+I+ +L+ +IC + I ++ DE+ VG R+G+ EH PD L L
Sbjct: 210 IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLG 269
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-SHS--YSGNPLACCAALATLEIFNK 547
KG+ GG LPLS V+ +I + GNP++ A LA LE ++
Sbjct: 270 KGLGGG-LPLSAVIAPAEILDC----------ASAFAMQTLHGNPISAAAGLAVLETIDR 318
Query: 548 DNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKF 603
D++ + + + L+ L HP I + R +G+ + ++ D + E + K
Sbjct: 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGME-LVCDRQSREPARAETAKL 377
Query: 604 FVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
A + L++ +G N + PP + + +I + + F+EL V
Sbjct: 378 IYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 428
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 249 bits (639), Expect = 7e-74
Identities = 102/405 (25%), Positives = 177/405 (43%), Gaps = 27/405 (6%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G ++D + V G S+ + A+ +Q H ++ ++++E L++LT
Sbjct: 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPG 122
Query: 313 KL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NIQ 370
+ GA AVE A+K++ + + + N+YHG T +A+T
Sbjct: 123 DHDKRTALFNSGAEAVENAIKVA------RLATGRPAVVAFDNAYHGRTNLTMALTAKSM 176
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+K + + Y + G + E AR AI +E + +AAIIIEP
Sbjct: 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI--GAQSLAAIIIEP- 233
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG I+ +L + + + IADE+ G RTG +FA EH I PD + ++
Sbjct: 234 IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMA 293
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KGI GG +PLS V ++ +++Y +Y GNP+ C AA+A L + + ++
Sbjct: 294 KGIAGG-MPLSAVTGRAELMDAVYAGG------LGGTYGGNPVTCAAAVAALGVMRELDL 346
Query: 551 LQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKFFVA 606
R +T L++L I R +G + A + I P +E +K
Sbjct: 347 PARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIE--IVKPGTLEPDAALTKSIAAE 404
Query: 607 ALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
AL +L+ G N + L+PP ++ + + +A+
Sbjct: 405 ALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAK 449
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 246 bits (631), Expect = 2e-73
Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 41/406 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
L K+YLD S V G++++ N +K Q++KL H SNL ++ + ++
Sbjct: 28 VYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT--SNLYYNENIAAAAK 85
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L+ + L F+ + G ++E A+K + Y +NKG + +FI ++S+HG TLGAL
Sbjct: 86 NLAKAS--ALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGAL 142
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
++T + +++ + L++ + D+ + K + K A
Sbjct: 143 SLTANEKYQKPFKPLIS--------------------GVKFAKYNDISSVEKLVNEKTCA 182
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
II+E VQ GG+ + + K +R++C+ +I LIADEI G GR+GKFFA EHA+I P
Sbjct: 183 IILES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILP 241
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + +K + G L + + K+ ++ + H +Y GNPL C A EI
Sbjct: 242 DIMTSAKALGCG-LSVGAFVINQKVASNSLEAGD-----HGSTYGGNPLVCAGVNAVFEI 295
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
F ++ IL+ +++ + ++L LI + G + + K
Sbjct: 296 FKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVK------VAKV 349
Query: 604 FVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+N LLL G N + +PP IL K I M+ + +
Sbjct: 350 IQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKSF 395
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 246 bits (631), Expect = 2e-73
Identities = 106/409 (25%), Positives = 187/409 (45%), Gaps = 49/409 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
S + G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P ++L+E
Sbjct: 32 SWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQMELAE 89
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
LS T G F+ + G A E A+K++ Y K K + + NS+HG TLG+L
Sbjct: 90 LLSKNT--FGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILSAHNSFHGRTLGSL 146
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
T +++ + L+ G ++E L +K + A
Sbjct: 147 TATGQPKYQKPFEPLV---------------PG-----FEYFEFNNVEDLRRKMSEDVCA 186
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+ +EP +Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA + + P
Sbjct: 187 VFLEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVP 245
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALAT 541
D L +KG+ GG +P+ V+ ++ N+ H ++ GNPLAC A +
Sbjct: 246 DVLTTAKGLGGG-VPIGAVIVNER----------ANVLEPGDHGTTFGGNPLACRAGVTV 294
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFS 600
++ K+ L+ + + + K L + + + + R G++ E +
Sbjct: 295 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVS------N 348
Query: 601 KKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
++ +N+LL+ P G NT+ +PP + EI + + +
Sbjct: 349 REVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 242 bits (621), Expect = 1e-71
Identities = 91/410 (22%), Positives = 179/410 (43%), Gaps = 46/410 (11%)
Query: 253 GKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G +YLD S VN G S+ + K Q+ KL H ++ + P ++L++KL + +
Sbjct: 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSP 100
Query: 312 YKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
F+ + G A+E ++K+ + +K I +HG T G++++T +
Sbjct: 101 GNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAFLGGFHGRTFGSISLTASK 153
Query: 370 QSFKEIYTSLLNKTYIITTPD----SRNINKGNSANEIARCAIFDLEILLKKNH---NKI 422
+ I + + P+ +IN + +E+ I +E + N ++
Sbjct: 154 AVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEV 213
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I EP +Q GG ++ + ++++ Y I L+ DE+ +G GRTGK FA E+
Sbjct: 214 AGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCAAL 539
PD + L+K + GG +P+ + + F +HS+++ GN LAC
Sbjct: 273 VPDVITLAKALGGGIMPIGATIFRKDL-----------DFKPGMHSNTFGGNALACAIGS 321
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
++I ++L +++ K + L L R G+ W + + +
Sbjct: 322 KVIDIV--KDLLPHVNEIGKIFAEELQGLADD-----VRGIGLAWGLE--YNEKK----V 368
Query: 600 SKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + K LLL P G + + ++PP ++++ E + + + +
Sbjct: 369 RDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 241 bits (618), Expect = 3e-71
Identities = 98/404 (24%), Positives = 163/404 (40%), Gaps = 42/404 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKLSSLTQ 311
KRY D +S++ GH + I A+ NQ L S L++L
Sbjct: 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SRAFFSVPLGICERYLTNLLG 121
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
Y + GA A E A K+ + Y + N K + +N++ G TLG ++ +
Sbjct: 122 Y--DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTT 179
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK-IAAIIIE 428
+ + P + DLE L ++ + + A I+E
Sbjct: 180 KKCTSNFGPF--------APQFSKVPYD------------DLEALEEELKDPNVCAFIVE 219
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK H + PD +
Sbjct: 220 P-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVIL 278
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
L K ++GG+ P+S V+ D I I H +Y GNPLA + L + +
Sbjct: 279 LGKALSGGHYPISAVLANDDIMLVIKPGE------HGSTYGGNPLAASICVEALNVLINE 332
Query: 549 NILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
+ + + + L + + + R KG++ A + E + +
Sbjct: 333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF---KNELVN--VLDICLKL 387
Query: 608 LKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+N L+ R + T+ L PP + K ++ T I +T DE
Sbjct: 388 KENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 237 bits (608), Expect = 3e-70
Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 44/398 (11%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKLSSLTQ 311
G RY+D +S++ GH + I AL +Q N++ S H EK++ LT
Sbjct: 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT--SRAFHSDQLGPWYEKVAKLTN 92
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
+ GA AVE A+K + + Y+ + N+ + I ++++HG T+GA+++++
Sbjct: 93 K--EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSN 150
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ +K + + P I G DLE L AA I+EP
Sbjct: 151 EEYKRGFGPM--------LPGIIVIPYG------------DLEALKAAITPNTAAFILEP 190
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+Q G+ + + +LK E+C N+ +ADEI G GRTGK FAC+ + PD L
Sbjct: 191 -IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL 249
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549
K + GG P+S I + H ++ GNPLAC ++A LE+ ++
Sbjct: 250 GKALGGGVFPISCAAANRDILGVFEPGS------HGSTFGGNPLACAVSIAALEVLEEEK 303
Query: 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 609
+ +R S + + I +P I R KG+ + + +P ++ +
Sbjct: 304 LTER-SLQLGEKLVGQLKEIDNPMITEVRGKGLFIG--IELNEP------ARPYCEQLKA 354
Query: 610 NELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
LL + N + + PP ++++ +++ I +
Sbjct: 355 AGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVLS 392
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 235 bits (601), Expect = 3e-69
Identities = 96/398 (24%), Positives = 170/398 (42%), Gaps = 46/398 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
+++ G Y+D + + V GH N + +A+K Q L + +
Sbjct: 37 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQTLPTPMRGEFYR 94
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L+++ +L F + G A E ALK + + +KKF+ + G T+G+L
Sbjct: 95 TLTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAMRGFSGRTMGSL 148
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+VT ++E + L+ I D+E L + + AA
Sbjct: 149 SVTWEPKYREPFLPLV--------EPVEFIPYN------------DVEALKRAVDEETAA 188
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP VQ GG+ +L+ REI LI DEI G GRTGK FA EH I P
Sbjct: 189 VILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L L+K + GG +PL + + +++ S+ H ++ GNPLA A +A +
Sbjct: 248 DILTLAKALGGG-VPLGVAVMREEVARSMPKGG------HGTTFGGNPLAMAAGVAAIRY 300
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ + +R ++ + L ++ PKI R G++ ++ + I
Sbjct: 301 LERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAPYIAR------ 353
Query: 605 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
++ +L G + +PP ++ K +++ + A+
Sbjct: 354 -LEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 234 bits (599), Expect = 2e-68
Identities = 99/401 (24%), Positives = 180/401 (44%), Gaps = 41/401 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ 311
G++Y D +SS+ GH + I ALK+Q++KL S + + + E ++ L
Sbjct: 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVLGEYEEYITKLFN 132
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
Y + G A E A K++ + Y + K K + ++ G TL A++ +
Sbjct: 133 Y--HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTD 190
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIE 428
+ + + P I DL L + +AA ++E
Sbjct: 191 PTSYDGFGPF--------MPGFDIIPYN------------DLPALERALQDPNVAAFMVE 230
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + PD +
Sbjct: 231 P-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVL 289
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
L K ++GG P+S V+ D I +I H +Y GNPL C A+A LE+ ++
Sbjct: 290 LGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL 608
N+ + + + I + + + R KG++ A ++I++ + + + K +
Sbjct: 344 NLAEN-ADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETKDWD--AWKVCLRLR 398
Query: 609 KNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 439
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 228 bits (585), Expect = 3e-67
Identities = 110/402 (27%), Positives = 187/402 (46%), Gaps = 48/402 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
L GK YLD +S VN GH+ + +ALK Q+ KL HV SNL + +L+
Sbjct: 20 VYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNLYENPWQEELAH 77
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL + G F+ + G +VE A+K++ YW +KG NK KFI +NS+HG T G+L
Sbjct: 78 KLVKHF-WTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFISFENSFHGRTYGSL 135
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T F + + L+ + + D++ + K + A
Sbjct: 136 SATGQPKFHKGFEPLVP--------------------GFSYAKLNDIDSVYKLLDEETAG 175
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
IIIE +Q GG+ +L ++EIC ++ LI DE+ G GRTG+F+A +H + P
Sbjct: 176 IIIEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKP 234
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + L+KG+ GG +P+ ++ +++ S + H ++ GNPLAC A ++
Sbjct: 235 DVIALAKGLGGG-VPIGAILAREEVAQSFTPGS------HGSTFGGNPLACRAGTVVVDE 287
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ +L + + + L L + + +G++ ++ E K +
Sbjct: 288 V--EKLLPHVREVGNYFKEKLKELGK--GKV--KGRGLMLGLELERE--------CKDYV 333
Query: 605 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645
+ AL+ LL+ + +PP I+ K I S + +
Sbjct: 334 LKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 219 bits (559), Expect = 2e-62
Identities = 85/431 (19%), Positives = 151/431 (35%), Gaps = 56/431 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP----VIKLSEKLSS 308
G R LD S G+S+ + K ++ N + L P V KL E L S
Sbjct: 62 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLS 121
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN--------------------KKK 348
+ + + G+ + E A K F ++ +K
Sbjct: 122 VAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYS 181
Query: 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR---NINKGNSANEIAR 405
+ ++HG T+G LA T+ ++ +I + I P + + E AR
Sbjct: 182 ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD-WPIAPFPRLKYPLEEFVKENQQEEAR 240
Query: 406 C--AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 463
C + DL + +K +A II+EP +Q GG + + +R+I + + DE
Sbjct: 241 CLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKHGCAFLVDE 299
Query: 464 IAVGCGRTGKFFACEHA--EIWPDFLCLSKGITGGYLPLS-LVMTTDKIYNSIYYKNNIN 520
+ G G TGKF+A EH + D + SK + G + Y
Sbjct: 300 VQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEEFRPNAPYR--------- 349
Query: 521 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKII-NFR 578
+++ G+P + I ++++L + K + L L +P+ I R
Sbjct: 350 ---IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR 406
Query: 579 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHM 637
+G +FD D K A ++L G ++ P + +
Sbjct: 407 GRGTFCSFD--TPDES----IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLF 460
Query: 638 TSAIFQTFNEL 648
+ +
Sbjct: 461 LNIFSDILADF 471
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 85.3 bits (212), Expect = 2e-17
Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 46/235 (19%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470
LLK++ + AAI++EP + AGG + + +L L+R + LI DE V R
Sbjct: 223 TADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDE--VMTSR 279
Query: 471 TGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI----YNSIYYKNNIN 520
A E I D L K I GG + +M ++ +
Sbjct: 280 LSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLM--ERFDPARDGAFA------ 330
Query: 521 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIINF 577
H+ +++ N L A A L +S + L + P
Sbjct: 331 ---HAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFT- 386
Query: 578 RQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+ I + + FF L+ G +YL P
Sbjct: 387 GLGSLGTIHFSRAPIRSAGDVRAADQQLK-ELFFFHMLRK-------G--IYLAP 431
Score = 35.7 bits (83), Expect = 0.085
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
G Y++ + + LFGHS+ I A++ L
Sbjct: 99 GHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV 131
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 80.4 bits (199), Expect = 7e-16
Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 61/246 (24%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
+ + + + IAA I EP G+ +L+ E+ Y I DE V
Sbjct: 191 MREVFANHGSDIAAFIAEP---VGSHFGVTPVSDSFLREGAELARQYGALFILDE--VIS 245
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL------VMT------TDKIYNSIYY 515
G R G ++ PD CL+K GG LP + VM K+
Sbjct: 246 GFRVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVL----- 299
Query: 516 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HP 572
H +++GNP+ AA+A ++ +D++ +I+ + +A+ L
Sbjct: 300 --------HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 573 KIINFRQKGMIWAF--------DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGN 619
+ + D + ++ +A + G
Sbjct: 352 WLAY-GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI-AAMRMALILE-------G- 401
Query: 620 TVYLMP 625
V +
Sbjct: 402 -VDIGG 406
Score = 34.9 bits (81), Expect = 0.14
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
G YLD + GH + +N A+ L+
Sbjct: 49 VHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH 88
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 79.8 bits (198), Expect = 8e-16
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 53/238 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
L+ L K +++AAI++EP G G++ +L+ V E+ + +I DE V
Sbjct: 192 LKEALDKWGHEVAAILVEP---IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE--VIT 246
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 517
R A + + PD L K I GG LP+ V Y
Sbjct: 247 AFRFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPLGPAY------- 298
Query: 518 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 574
+ + +GNP + + +A LE+ ++ + +++ + + K +
Sbjct: 299 ------QAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDIT 352
Query: 575 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+N R KG + + IED + E F KFF L+ G V L P
Sbjct: 353 LN-RLKGALTVYFTTNTIEDYDAAQDTDGEMF-GKFFKLMLQE-------G--VNLAP 399
Score = 33.2 bits (77), Expect = 0.39
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
G +Y+D ++++ + GH++ +I KA+
Sbjct: 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAEN 86
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 79.8 bits (198), Expect = 8e-16
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 54/239 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
+ ++ ++A II+EP AG I +L +R +C+ + LI DE V
Sbjct: 190 VRQAFEQYPQEVACIIVEP---VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE--VMT 244
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R A ++ + PD CL K I GG +P+ VM + + +Y
Sbjct: 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVM--NALAPTGPVY----- 296
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 576
+ + SGNP+A A A L ++ + + +++ + L P ++N
Sbjct: 297 ----QAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVN 352
Query: 577 FRQKGMIWAFDVIIEDPEQIETFS----------KKFFVAALKNELLLRPIGNTVYLMP 625
GM F + + + + K+FF L+ G VYL P
Sbjct: 353 -HVGGMFGLF---FTNADTVTCYQDVMNCDVERFKRFFHLMLEE-------G--VYLAP 398
Score = 33.2 bits (77), Expect = 0.42
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
GK Y+D + SW + GH++ I +A+ + +
Sbjct: 52 GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER 84
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 79.1 bits (196), Expect = 2e-15
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 49/236 (20%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
++ L +N +IA +I+EP G G I+ D+ +L+ +REI ++ L+ DE V
Sbjct: 189 VKALFAENPGEIAGVILEP---IVGNSGFIVPDAGFLEGLREITLEHDALLVFDE--VIT 243
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R E + PD L K I GG LP+ +M + +Y
Sbjct: 244 GFRIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIM--QLVAPAGPMY----- 295
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 576
+ + SGNPLA A + TLE+ + + + Q K+++ L ++ H
Sbjct: 296 ----QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGG 351
Query: 577 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+ GM F + + + E ++ F +F L+ G +YL P
Sbjct: 352 -QVSGMFGFFFTEGPVHNYEDAKKSDLQKF-SRFHRGMLEQ-------G--IYLAP 396
Score = 33.2 bits (77), Expect = 0.37
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
G RY+D + +W + GH++ + +ALK + K
Sbjct: 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK 83
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 77.5 bits (192), Expect = 5e-15
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 53/238 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
LE + + ++IA +I+EP G+I +L ++ + LI DE V
Sbjct: 193 LERVFAEYGDRIAGVIVEP---VIANAGVIPPRREFLAALQRLSRESGALLILDE--VVT 247
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 517
G R G A + I D + L K I GG P+ SL+ K++
Sbjct: 248 GFRLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVF------- 299
Query: 518 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 574
++ +++ +P+ A LATL+ ++ + + K + +A + ++ P
Sbjct: 300 ------NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYT 353
Query: 575 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
IN R + M+ F + + Q + + K L+ G V++ P
Sbjct: 354 IN-RVESMMQLFIGVEEVSNAAQARKADKKFY-VKLHEEMLRR-------G--VFIAP 400
Score = 34.4 bits (80), Expect = 0.20
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
+ L T G R +D + ++ + GH + + +A++ L +
Sbjct: 48 AYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR 87
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 73.3 bits (181), Expect = 1e-13
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 50/236 (21%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
++ ++ + IA +I+EP AG G++ +L+ +RE+ LI DE V
Sbjct: 190 VKYAFEQFGDDIACVIVEP---VAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE--VMT 244
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R + + PD CL K I GG LP+ + +M ++ IY
Sbjct: 245 GFRVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIM--RQVAPSGPIY----- 296
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 576
+ + SGNPLA A TL + + + L P IN
Sbjct: 297 ----QAGTLSGNPLAMAAGYETLVQL-TPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351
Query: 577 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
R MI F D + + + ++ F ++ ++ G V+L P
Sbjct: 352 -RAGSMIGIFFTDEPVINYDAAKSSNLQFF-AAYYREMVEQ-------G--VFLPP 396
Score = 33.2 bits (77), Expect = 0.45
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
G Y+D + SW + GH+N + +ALK +
Sbjct: 52 GNEYIDYVLSWGPLIHGHANDRVVEALKAVAER 84
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 66.7 bits (164), Expect = 1e-11
Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 51/237 (21%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
L +LK+ +IAAII EP G G+++ +LK + E Y + LIADE V
Sbjct: 189 LREVLKRRGEEIAAIIFEP---VVGNAGVLVPTEDFLKALHE-AKAYGVLLIADE--VMT 242
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R A E + PD + L K + GG LP +M +K+ +Y
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIM--EKVAPLGPVY----- 294
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDMKKITKALTSLIT---HPKII 575
+ + SGNPLA A LATLE+ ++ + ++ L ++ P +
Sbjct: 295 ----QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350
Query: 576 NFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
N R MI F + + + E F K+FF L G +Y P
Sbjct: 351 N-RVGSMITVFFTEGPVVTFQDARRTDTELF-KRFFHGLLDR-------G--IYWPP 396
Score = 33.2 bits (77), Expect = 0.38
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285
G RYLD + SW + GH++ + ++ L +
Sbjct: 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 1e-11
Identities = 80/437 (18%), Positives = 133/437 (30%), Gaps = 158/437 (36%)
Query: 539 LATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF---DVIIEDPEQ 595
L F + L+ D I L+ + K +I + ++ + P
Sbjct: 85 NLCLTEFE-NCYLE--GND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 596 IETFSKKFFVAALKNELLLRPI----GNT-VYLMPPYILNKNEIQHMTSAIFQTFNEL-D 649
++ S F A + L I GNT Y E++ ++QT++ L
Sbjct: 139 KKSNSA-LFRAVGEGNAQLVAIFGGQGNTDDYF--------EELRD----LYQTYHVLVG 185
Query: 650 EVIN-----LFNLPFNDLLFRAQKVHRKYFDANEIELAVLLS-IKTGGCTEDCGY----- 698
++I L L L A+KV + + +L ++ T D Y
Sbjct: 186 DLIKFSAETLSELIRTTL--DAEKVFTQGLN--------ILEWLENPSNTPDKDYLLSIP 235
Query: 699 --CP-----QSTHYNTEITATKILSI----------------ESVITAAQKAKSDGATRF 735
CP Q HY + K+L + ++TA A++D
Sbjct: 236 ISCPLIGVIQLAHY---VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD----- 287
Query: 736 CMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 795
+W ++ I + IG+ C +AY N
Sbjct: 288 ----SWESF----FVSVRKAITVLFFIGVR-CY--------EAYP-----------NTSL 319
Query: 796 SPKLYGDIISTRDYENRLNT----LKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851
P + D + EN L I L+ + ++ +
Sbjct: 320 PPSILEDSL-----ENNEGVPSPML-------------SISNLT-----QEQVQDYVNKT 356
Query: 852 NPY-PESVPI-----N---NLVQIKGTP--LYGSSILDPLEFIRTIAVARITMPTSRIRM 900
N + P + N NLV + G P LYG ++ +R A + SRI
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLV-VSGPPQSLYGLNLT-----LRKAK-APSGLDQSRIPF 409
Query: 901 SAGRKEMGETTQAFCFL 917
S RK FL
Sbjct: 410 S-ERKLKFSN----RFL 421
Score = 46.2 bits (109), Expect = 5e-05
Identities = 64/402 (15%), Positives = 119/402 (29%), Gaps = 181/402 (45%)
Query: 200 GDNLYGK-KYSKSLIFNRQALH---AYKLGLIH-PKNNLKLKWRINLPDDISKLITFSGK 254
G +LY K ++ ++NR H Y ++ NN P ++ I F G+
Sbjct: 1632 GMDLYKTSKAAQD-VWNRADNHFKDTYGFSILDIVINN---------P--VNLTIHFGGE 1679
Query: 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIK-LSEKLSSLTQ 311
+ G K ++ + + E ++ L + + K ++E +S T
Sbjct: 1680 K-------------G-------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT- 1718
Query: 312 YKLGHCFYGSDG----------AS-AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 360
F G A +E A F +KG + G +
Sbjct: 1719 ------FRSEKGLLSATQFTQPALTLMEKAA---FEDLKSKGLIPADATFA------GHS 1763
Query: 361 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 420
LG E Y +A
Sbjct: 1764 LG-----------E---------Y--------------AA-------------------- 1769
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYL-----KLVREIC-------NNYNIHLIADEIAVGC 468
L A M + + + ++ +NY + IA+
Sbjct: 1770 ---------LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM------IAINP 1814
Query: 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS- 527
GR F+ E + ++ G G+L + +V N N+ +
Sbjct: 1815 GRVAASFSQEALQ----YVVERVGKRTGWL-VEIV--------------NYNV---ENQQ 1852
Query: 528 Y--SGNPLACCAALATL-EIFNKDNILQRISQDMKKITKALT 566
Y +G+ AL T+ + N + Q+I D+ ++ K+L+
Sbjct: 1853 YVAAGDL----RALDTVTNVLNFIKL-QKI--DIIELQKSLS 1887
Score = 33.5 bits (76), Expect = 0.47
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 28/84 (33%)
Query: 872 YGSSILD-----PLE----F-------IR--TIAVARITMPTSRIRMSAGRKEMGETTQA 913
YG SILD P+ F IR A+ T+ +++ KE+ E + +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 914 FCFLAGANSIFYGDK-LLT-TDNT 935
+ F +K LL+ T T
Sbjct: 1717 Y--------TFRSEKGLLSATQFT 1732
Score = 32.7 bits (74), Expect = 0.68
Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 64/190 (33%)
Query: 71 LINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMI 130
L+N + +VV+ +S L L RK A P +G+
Sbjct: 370 LVNGAKN-------------LVVSGPPQSLYGLNLTL------RKAKA-----P--SGLD 403
Query: 131 NAAIMRNPHNRIKMTVSKNF---NAKPALTYYERLATGIIN----KKHISLIRCNLKTGR 183
+ R P + K+ S F + P ++ A+ +IN K ++S +++
Sbjct: 404 QS---RIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQ--- 456
Query: 184 THQIRVHMQWLGHGIVGDNLYGKKYSKSLIFN--RQALHAYKLGLIHPKNNLKLKWRINL 241
I V+ G +L + S S+ + L +KW
Sbjct: 457 ---IPVY-----DTFDGSDL--RVLSGSISERIVDCIIR------------LPVKWETTT 494
Query: 242 PDDISKLITF 251
+ ++ F
Sbjct: 495 QFKATHILDF 504
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 6e-10
Identities = 103/726 (14%), Positives = 200/726 (27%), Gaps = 256/726 (35%)
Query: 68 YPFLINVPRAGIVHRLD-KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
Y +++V V D K+ + S + H++ V + W
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLR-LFW----- 69
Query: 127 NGMINAAIMRNPHNRIKMTV----SKNFN----------AKPAL------TYYERLATG- 165
++ ++ V N+ +P++ +RL
Sbjct: 70 ------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 166 -IINKKHISLIRCNLKTGRTH--QIRVHMQWLG-HGIVGDNLYGKKYSKSLIFNRQALHA 221
+ K ++S ++ LK R ++R + + G++G GK + AL
Sbjct: 124 QVFAKYNVSRLQPYLKL-RQALLELRPA-KNVLIDGVLG---SGKT---WV-----ALDV 170
Query: 222 YKLGLIHPKNNLKLKWRINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKN 281
K + W+N + NS + +
Sbjct: 171 CL--------------------SYKVQCKMDFKIF-------WLN-LKNCNS--PETVLE 200
Query: 282 QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW-YN 340
L KL + + N T + + KL +++ L+ Y
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRI----------------HSIQAELRRLLKSKPYE 244
Query: 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400
L + L N + + A N+ K ++TT + + ++A
Sbjct: 245 NCLL-----V-LLNVQNAKAWNAF---NLSC----------KI-LLTTRFKQVTDFLSAA 284
Query: 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC--NNYNIH 458
L + ++ Q L RE+ N +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------------DLPREVLTTNPRRLS 331
Query: 459 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 518
+IA+ I + W D + ++ T I +S+ N
Sbjct: 332 IIAESIR------------DGLATW-DN----------WKHVNCDKLTTIIESSL---NV 365
Query: 519 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR 578
+ + + L +F I ++
Sbjct: 366 LEPAEYRKMFD-----------RLSVFPPS----------AHIP---------TILL--- 392
Query: 579 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL--RPIGNTVYLMPPYILNKNEIQH 636
+IW FDVI D + V L L+ +P +T+ + Y+ K ++++
Sbjct: 393 --SLIW-FDVIKSDVMVV--------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 637 MTS---AIFQTFN------------------------------ELDEVINLFNLPFNDLL 663
+ +I +N E E + LF + F D
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 664 FRAQKV-HRKY-FDANEIELAVLLSIKTGGCTEDCGY----CPQSTHYNTEITATK--IL 715
F QK+ H ++A+ L L +K Y C Y + A +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKF--------YKPYICDNDPKYERLVNAILDFLP 553
Query: 716 SIESVI 721
IE +
Sbjct: 554 KIEENL 559
Score = 55.6 bits (133), Expect = 8e-08
Identities = 67/462 (14%), Positives = 133/462 (28%), Gaps = 132/462 (28%)
Query: 542 LEIFNKDNILQRISQDMKKI--TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
+ F + + + K I + + +I G + F ++ E++
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD----AVSGTLRLFWTLLSKQEEM--- 78
Query: 600 SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVINLFNLPF 659
+KF L+ N +LM P K E + S + + + E + + N F
Sbjct: 79 VQKFVEEVLRI--------NYKFLMSPI---KTEQRQ-PSMMTRMYIEQRDRLYNDNQVF 126
Query: 660 NDL-LFRAQKVHRKYFDANEIELAVLLSIKT---------GGCTEDCGYCPQSTHYNTEI 709
+ R Q ++ A LL ++ G G
Sbjct: 127 AKYNVSRLQPYL-------KLRQA-LLELRPAKNVLIDGVLGS----G------------ 162
Query: 710 TATKILSIESVITAAQKAKSDGA-TRFCMGAAW----RELKDRD-LDNIENMICEVKKIG 763
K + + A S + W L+ ++ ++ ++
Sbjct: 163 ---K-----TWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 764 LETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG 823
+ + +K + + ++ ++ YEN L L NV+N
Sbjct: 214 TS--------RSDHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 824 I----NICC--------GGII-GLSESRDQRAELIFQLANLNPYPES---------VPIN 861
N+ C + LS + L L P E
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQ 316
Query: 862 NL-VQI-KGTPLYGSSI-------LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQ 912
+L ++ P S I L + + + ++ T+ I S E E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRK 373
Query: 913 AFCFLAGANSIFYGD-----KLLTT--DNTKTNDDSKLLKKL 947
F L+ +F LL+ + +D ++ KL
Sbjct: 374 MFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Score = 37.5 bits (86), Expect = 0.026
Identities = 51/344 (14%), Positives = 102/344 (29%), Gaps = 104/344 (30%)
Query: 646 NELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 705
+ +D + D+L + FD +++ + SI + E+ + S
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILS---KEEIDHIIMSKD- 59
Query: 706 NTEITATKILSIESVITAAQKAKSDGATRFCMGA----------AWR-ELKDRDLDNIEN 754
++ T L T K + +F + E + +
Sbjct: 60 --AVSGTLRL----FWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRM 111
Query: 755 MICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLN 814
I + + + N+NQ + V + + Y + L
Sbjct: 112 YIEQRDR----------LYNDNQVFAKYNV----------SRLQPYLKL------RQALL 145
Query: 815 TLKNVRNVGINICCGGIIGLSES-------RDQRAEL-----IF--QLANLNPYPESV-- 858
L+ +NV I+ G++G ++ + + IF L N N PE+V
Sbjct: 146 ELRPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLE 200
Query: 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA 918
+ L +DP R+ + I + I+ R L
Sbjct: 201 MLQKL----------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----------LLK 239
Query: 919 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN------TRNIKI 956
Y + LL N + ++K ++ TR ++
Sbjct: 240 SKP---YENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQV 277
Score = 32.1 bits (72), Expect = 1.0
Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 47/194 (24%)
Query: 7 ELIIIKPKKNFFLNKTEKK-VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLL 65
+++ K K + K K+ I + IY + ++ + N+ A +H +++
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA---LH-----------RSIV 450
Query: 66 EIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYI--HLVNQL---KMHIVQRKYLAMV 120
+ Y N+P+ D + + + S+I HL N +M + + +L
Sbjct: 451 DHY----NIPKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 121 WGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALT----YYERL-----------ATG 165
+ K+ + + N I T+ + KP + YERL
Sbjct: 502 FLEQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 166 IINKKHISLIRCNL 179
+I K+ L+R L
Sbjct: 559 LICSKYTDLLRIAL 572
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 51.7 bits (123), Expect = 8e-07
Identities = 47/280 (16%), Positives = 80/280 (28%), Gaps = 46/280 (16%)
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS--- 355
L +K L Y + G A + + Y + K + + N
Sbjct: 78 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPV--LLKYKQKEGKAKNPVFISNFHFD 133
Query: 356 ---YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412
H E G A+ + ++ + KG+ I L+
Sbjct: 134 TTAAHVELNGCKAINIVTE-------------KAFDSETYDDWKGDFD-------IKKLK 173
Query: 413 ILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG---- 467
+ ++ + I AI+ AGG LK V EI + I ++ D
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQP-VSMSNLKEVYEIAKQHGIFVVMDSARFCENAY 232
Query: 468 --CGRTGKFFACEHAEIWPDFLCLSKGIT-----GGYLPL-SLVMTTDKIYNSIYYKNNI 519
R K+ E+ D + +T L + LV D +
Sbjct: 233 FIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRC 292
Query: 520 NIFLHSHSYSGNPLACCAALA--TLEIFNKDNILQRISQD 557
+Y G AA+ E ++ + RI Q
Sbjct: 293 VPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQV 332
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 44.3 bits (104), Expect = 2e-04
Identities = 48/303 (15%), Positives = 85/303 (28%), Gaps = 61/303 (20%)
Query: 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS- 355
+ L + L +K H G A + ++ K N
Sbjct: 75 ENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQL----------AIKPGQYVAGNMY 122
Query: 356 -----YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410
YH E GA+ V ++ KG+ +
Sbjct: 123 FTTTRYHQEKNGAVFVDIVR-------------DEAHDAGLNIAFKGDID-------LKK 162
Query: 411 LEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD--EIAVG 467
L+ L+ + IA I + V AGG ++ VRE+ + I + D
Sbjct: 163 LQKLIDEKGAENIAYICLAVTVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVEN 221
Query: 468 C----GRTGKFFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDK-IYNSIY 514
+ F AEI + + K + D +++S
Sbjct: 222 AYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDDEMFSSA- 278
Query: 515 YKNNINIFLHSHSYSGNPLACCAALAT--LEIFNKDNILQRISQDMKKITKALTSLITHP 572
K + ++ SY G A+A E + I R+ Q K + +
Sbjct: 279 -KELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIV 337
Query: 573 KII 575
+ +
Sbjct: 338 EPV 340
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 4e-04
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 28/55 (50%)
Query: 280 KNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334
K L KL+ +SL KL Y D A A +A+K +
Sbjct: 19 KQALKKLQ-------------------ASL---KL----YADDSAPA--LAIKAT 45
Score = 36.1 bits (82), Expect = 0.017
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 370 QSFKEIYTSLLNKTYIITTPDS 391
Q+ K++ SL K Y DS
Sbjct: 20 QALKKLQASL--KLY---ADDS 36
Score = 33.8 bits (76), Expect = 0.100
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 840 QRAELIFQL-ANLNPY-PESVPINNLVQIKGT 869
++ + +L A+L Y +S P + IK T
Sbjct: 18 EKQA-LKKLQASLKLYADDSAPA---LAIKAT 45
Score = 33.0 bits (74), Expect = 0.18
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 775 ENQAYRLKKVGLDYYNHNLDTSPKLYGD 802
E QA LKK L S KLY D
Sbjct: 18 EKQA--LKK---------LQASLKLYAD 34
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta
sheet, isomerase; 1.60A {Escherichia coli}
Length = 217
Score = 34.5 bits (80), Expect = 0.100
Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 51/137 (37%)
Query: 11 IKPKKNFFLNKTEK-----KVIKLDIIYEDNEIIILNKSAGLVV-------HPAIGNLSG 58
+K F N K + + + +I+ NK ++
Sbjct: 9 NTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK------- 61
Query: 59 TLFDNLLEIYPFLINVPR---AGIVHRLDKNSSGLMVVAKSIKSYIHLVN--QLKMHI-- 111
TL + I V AG RLD++S GL+V L N L+ +
Sbjct: 62 TLKE--------FIPVQGVYAAG---RLDRDSEGLLV----------LTNNGALQARLTQ 100
Query: 112 ----VQRKYLAMVWGIP 124
+ Y V GIP
Sbjct: 101 PGKRTGKIYYVQVEGIP 117
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 34.6 bits (79), Expect = 0.18
Identities = 45/279 (16%), Positives = 89/279 (31%), Gaps = 40/279 (14%)
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L+E + ++ Y+ + G A ++ + + + L++ K + N +
Sbjct: 76 YYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
T G + + +Y R KGN + LE +++
Sbjct: 134 TTQGHSQINGCT-VRNVYIKEA------FDTGVRYDFKGN-------FDLEGLERGIEEV 179
Query: 419 H-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD-----EIAVGCGRTG 472
N + I+ AGG LK + I Y+I ++ D E A +
Sbjct: 180 GPNNVPYIVATITSNSAGGQP-VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQRE 238
Query: 473 KFFACEH-AEIWPDF--------LCLSKGITGGYLPL-SLVMTTDKIYNSIY--YKNNIN 520
+ +I + + K +P+ L+ D + +Y +
Sbjct: 239 AEYKDWTIEQITRETYKYADMLAMSAKK---DAMVPMGGLLCMKDDSFFDVYTECRTLCV 295
Query: 521 IFLHSHSYSGNPLACCAALATL--EIFNKDNILQRISQD 557
+ +Y G LA + N D + RI+Q
Sbjct: 296 VQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQV 334
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta
sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia
coli}
Length = 189
Score = 32.9 bits (76), Expect = 0.26
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 46/109 (42%)
Query: 34 EDNEIIILNKSAGLVV-------HPAIGNLSGTLFDNLLEIYPFLINVPR---AGIVHRL 83
+ +I+ NK ++ TL + I V AG RL
Sbjct: 9 QPTRVILFNKPYDVLPQFTDEAGRK-------TLKE--------FIPVQGVYAAG---RL 50
Query: 84 DKNSSGLMVVAKSIKSYIHLVN--QLKMHI------VQRKYLAMVWGIP 124
D++S GL+V L N L+ + + Y V GIP
Sbjct: 51 DRDSEGLLV----------LTNNGALQARLTQPGKRTGKIYYVQVEGIP 89
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 33.4 bits (77), Expect = 0.31
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 462
L++ +K+ K A+I+ G D I EIC +I LI D
Sbjct: 111 LLKLAIKECEKKPKALIL---THLYGNAAKMDEI-----VEICKENDIVLIED 155
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 32.3 bits (74), Expect = 0.68
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD----- 462
+ ++ +K +++++IE + GG + L+ + E C+ I L D
Sbjct: 125 LLTID-DIKSLREPVSSVLIELPQREIGGQL-PAFEELEKISEYCHEQGISLHLDGARLW 182
Query: 463 EIAVGCGRTGKFFACEHAE-IWPDFLCLSKGI 493
EI ++ + C + ++ + KGI
Sbjct: 183 EITPFYQKSAEEI-CALFDSVY---VSFYKGI 210
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 31.4 bits (72), Expect = 0.95
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 767
E + A GA M +K + D++E + V K+ +E C
Sbjct: 93 PSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECC 152
Query: 768 LTLGMLNENQ---AYRL-KKVGLDY 788
L + + G +Y
Sbjct: 153 Y----LTNEEKVEVCKRCVAAGAEY 173
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 445 LKLVREICNNYNIHLIADEI 464
LK V N +NIHL+ DEI
Sbjct: 210 LKSVLSFTNQHNIHLVCDEI 229
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 30.6 bits (70), Expect = 1.8
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--------LETC 767
+ A +A DGA + K D + + E+ + +ET
Sbjct: 68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETP 127
Query: 768 LTLGMLNENQ---AYRL-KKVGLDY 788
LNE + A + + G D+
Sbjct: 128 Y----LNEEEIKKAVEICIEAGADF 148
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome,
RNA modifying enzyme, isomerase; 2.60A {Escherichia
coli}
Length = 237
Score = 30.3 bits (69), Expect = 2.2
Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 57/178 (32%)
Query: 33 YEDNEIIILNKSAGLV------VHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
D +I LNK G+V I + ++ ++P + RLDK+
Sbjct: 11 GSDLVLIALNKPVGIVSTTEDGERDNIVDF----VNHSKRVFP----------IGRLDKD 56
Query: 87 SSGLMVVAKSIKSYI----HLVNQLKMH---IVQRKYLAMVWGIPKLNGMINAAIMRNPH 139
S GL+ + LVN++ + +++YL ++ I +R
Sbjct: 57 SQGLIF--------LTNHGDLVNKI-LRAGNDHEKEYLV------TVDKPITEEFIR--- 98
Query: 140 NRIKMTVS-KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196
+ V K + K+ + R L G QIR + G+
Sbjct: 99 -GMSAGVPILGTVTKKC----------KVKKEAPFVFRITLVQGLNRQIRRMCEHFGY 145
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 30.8 bits (70), Expect = 2.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 445 LKLVREICNNYNIHLIADEI 464
L L+ + IHLI+DEI
Sbjct: 213 LYLLLSFVEDKGIHLISDEI 232
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; HET: GOL; 1.25A {Mycobacterium
smegmatis} PDB: 3ng3_A
Length = 231
Score = 30.3 bits (69), Expect = 2.6
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 767
T A+ A + GAT M DLD + I V+ K+ +E+
Sbjct: 78 VPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESA 137
Query: 768 L 768
Sbjct: 138 A 138
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA
complex, S4 domain, alpha/beta protein, isomerase,
RNA-binding, rRNA processing; HET: FHU; 3.00A
{Escherichia coli}
Length = 290
Score = 30.3 bits (69), Expect = 2.6
Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 71/184 (38%)
Query: 34 EDNEIIILNKSAGLV--VHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLM 91
ED +I LNK G+V + ++ ++P + RLDK+S GL+
Sbjct: 65 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP----------IGRLDKDSQGLI 114
Query: 92 VVAKSIKSYI-----HLVNQLKMH---IVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
LVN++ + +++YL ++ I +
Sbjct: 115 ---------FLTNHGDLVNKI-LRAGNDHEKEYLV------TVDKPITEEFI-------- 150
Query: 144 MTVSKNFNAKPALTYYERLATGI-----------INKKHISLIRCNLKTGRTHQIRVHMQ 192
++ G+ + K+ + R L G QIR +
Sbjct: 151 ----------------RGMSAGVPILGTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCE 194
Query: 193 WLGH 196
G+
Sbjct: 195 HFGY 198
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 30.4 bits (68), Expect = 3.2
Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 29/198 (14%)
Query: 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351
L H+ +EK ++ Y ++ G+S A + G +
Sbjct: 167 DLLIHEGPAVAAEKHAARV-YNADKTYFVLGGSSN---ANNTVTSALVSNG----DLVLF 218
Query: 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411
+N++ ALA+ + Y+ T + G ++ I +L
Sbjct: 219 DRNNHKSVYNSALAMAGGRPV-----------YLQTNRNPYGFIGGIYDSDFDEKKIREL 267
Query: 412 EILL----KKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 467
+ K +I +Y+ V + + ++ D VG
Sbjct: 268 AAKVDPERAKWKRPFRLAVI---QLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG 321
Query: 468 CGRTGKFFACEHAEIWPD 485
+ + D
Sbjct: 322 YEQFIPMMRNSSPLLIDD 339
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Length = 708
Score = 30.2 bits (68), Expect = 4.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 918 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMKNNI 962
AG S++ L + D +++ LGIN I NN+
Sbjct: 168 AG-LSLWDWGSLPNYLAPRYTDYARINASLGINGTVI-----NNV 206
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure,
structural genomics, PSI-2, protein structure
initiative; 1.80A {Methanococcus maripaludis S2} PDB:
3c0b_A
Length = 334
Score = 29.5 bits (66), Expect = 5.5
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 382 KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYD 441
+ Y TPD + +K +S I++ DL+ + + + IA E + ++ +
Sbjct: 211 EEYTCDTPDGKGTDKRSSLVRISKVLCSDLDQISEIDAENIAKNYYELWKE-----LILE 265
Query: 442 SIYLKLVREICNNYNIHLIADEIAVGCGR 470
++ + Y + + G G
Sbjct: 266 NV-----ENVAEKYGSKKV---VITGLGE 286
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 29.2 bits (66), Expect = 6.1
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 767
+ A A GA M LK ++ + + I V K+ +ETC
Sbjct: 109 ETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETC 168
Query: 768 L 768
Sbjct: 169 Y 169
>1yyc_A LEA protein, putative late embryogenesis abundant protein;
structural genomics, protein structure initiative, CESG;
NMR {Arabidopsis thaliana}
Length = 174
Score = 28.9 bits (64), Expect = 6.2
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 832 IGLSESRDQRAELIFQLANLNPYPESVPINNL---VQIKGTPLYGSSILDPLEFIR---T 885
+ + +++ NPY +S+PI + ++ + +I DP + T
Sbjct: 52 VDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTT 111
Query: 886 IAVARITMPTSRIRMSAGR 904
+ + + S
Sbjct: 112 VLDVPVKVAYSIAVSLMKD 130
>3oa3_A Aldolase; structural genomics, seattle structural genomics center
for infectious disease, ssgcid, pathogenic fungus; 1.60A
{Coccidioides immitis}
Length = 288
Score = 29.2 bits (66), Expect = 6.2
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 16/85 (18%)
Query: 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 767
S + ++ A++A +GA+ M + L ++ ++ I V+ K+ LET
Sbjct: 124 STDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETS 183
Query: 768 LTLGMLNENQAYRL----KKVGLDY 788
L ++ G DY
Sbjct: 184 Q----LTADEIIAGCVLSSLAGADY 204
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 28.8 bits (65), Expect = 7.9
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK----------KIGLE 765
I+ + + A + GA + +R L + +++ K K+ +E
Sbjct: 83 DIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIE 142
Query: 766 TCL 768
T
Sbjct: 143 TGE 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.407
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,640,170
Number of extensions: 909278
Number of successful extensions: 2140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1938
Number of HSP's successfully gapped: 122
Length of query: 965
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 862
Effective length of database: 3,825,930
Effective search space: 3297951660
Effective search space used: 3297951660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)