RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8199
(965 letters)
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId:
562]}
Length = 312
Score = 253 bits (646), Expect = 3e-77
Identities = 175/303 (57%), Positives = 230/303 (75%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T
Sbjct: 6 LSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKT 65
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE C
Sbjct: 66 GLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEAC 125
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI +C
Sbjct: 126 MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 185
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRTIA
Sbjct: 186 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 245
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947
VARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +KL
Sbjct: 246 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 305
Query: 948 GIN 950
G+N
Sbjct: 306 GLN 308
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 238 bits (609), Expect = 8e-71
Identities = 102/405 (25%), Positives = 176/405 (43%), Gaps = 37/405 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
L G++Y D +SS GH + I ALK+Q++KL S + V+ E+
Sbjct: 33 IYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVLGEYEE 90
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN--KKKFICLQNSYHGETLGA 363
+ + G A E A K++ + Y + K K + ++ G TL A
Sbjct: 91 YITKLFNYHKVLPMNT-GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA 149
Query: 364 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423
++ + + + + + II D + LE L+ +A
Sbjct: 150 ISSSTDPTSYDGFGPFMPGFDIIPYND-----------------LPALERALQ--DPNVA 190
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
A ++EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ +
Sbjct: 191 AFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 249
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
PD + L K ++GG P+S V+ D I +I H +Y GNPL C A+A LE
Sbjct: 250 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HFSTYGGNPLGCRVAIAALE 303
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
+ ++N+ + + + L L + R KG++ A I E + + K
Sbjct: 304 VLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNA----IVIKETKDWDAWKV 358
Query: 604 FVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 359 CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 403
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 237 bits (605), Expect = 4e-70
Identities = 106/411 (25%), Positives = 180/411 (43%), Gaps = 27/411 (6%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
++ G+ YLD V GH + + A++ QL KL H L ++P ++L E
Sbjct: 32 CRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEI 91
Query: 306 LSS-LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
++ + + G+ AVE A+K++ + I +YHG T L
Sbjct: 92 MNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK------RSGTIAFSGAYHGRTHYTL 145
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
A+T + L+ +E A IAA
Sbjct: 146 ALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI----SEDDAIASIHRIFKNDAAPEDIAA 201
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
I+IEP VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E + P
Sbjct: 202 IVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAP 260
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D +K I GG+ PL+ V ++ +++ +Y+GNP+AC AAL L++
Sbjct: 261 DLTTFAKSIAGGF-PLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKV 313
Query: 545 FNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSK-- 601
F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + +K
Sbjct: 314 FEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLT 372
Query: 602 -KFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ A L+L G N + ++ P + +I+ I Q F+E
Sbjct: 373 AEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 423
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 229 bits (585), Expect = 8e-68
Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 42/396 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+++ G Y+D + + V GH N + +A+K Q L + L +
Sbjct: 29 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRT 87
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L+++ +L F + G A E ALK + + +KKF+ + G T+G+L+
Sbjct: 88 LTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAMRGFSGRTMGSLS 141
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
VT ++E + L+ I D +E L + + AA+
Sbjct: 142 VTWEPKYREPFLPLVEPVEFIPYND--------------------VEALKRAVDEETAAV 181
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP VQ GG+ +L+ REI LI DEI G GRTGK FA EH I PD
Sbjct: 182 ILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 240
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L L+K + GG ++ H ++ GNPLA A +A +
Sbjct: 241 ILTLAKALGGGVPL-------GVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 293
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+ + +R ++ + L ++ PKI R G++ ++ + I K+ V
Sbjct: 294 ERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRV 352
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
L L+ + +PP ++ K +++ + A+
Sbjct: 353 ------LALQAGPTVIRFLPPLVIEKEDLERVVEAV 382
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 223 bits (569), Expect = 2e-65
Identities = 90/406 (22%), Positives = 157/406 (38%), Gaps = 34/406 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ + KRY D +S++ GH + I A+ NQ L + P+
Sbjct: 31 VFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA-FFSVPLGICERY 89
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L++L Y A+ L + Y K N K + +N++ G TLG ++
Sbjct: 90 LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCIS 149
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
+ + + + + D + + + + A
Sbjct: 150 ASTTKKCTSNFGPFAPQFSKVPYDDLEALEE-------------------ELKDPNVCAF 190
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK H + PD
Sbjct: 191 IVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD 249
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ L K ++GG+ P+S V+ D I I H +Y GNPLA + L +
Sbjct: 250 VILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVL 303
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ + + + + L + + + R KG++ A + E
Sbjct: 304 INEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN-----VLDIC 358
Query: 605 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
+ +N L+ R + T+ L PP + K ++ T I +T D
Sbjct: 359 LKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 212 bits (541), Expect = 3e-61
Identities = 141/403 (34%), Positives = 222/403 (55%), Gaps = 15/403 (3%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L K
Sbjct: 35 CELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRK 94
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++T L F G+ AVEVA+KM+ YW K +++F+ +N YHG+T GA++
Sbjct: 95 LVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK-GEARQRFLTFRNGYHGDTFGAMS 153
Query: 366 VTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
V + S ++ L + P SR + + + + + + ++IAA
Sbjct: 154 VCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA------AHRHEIAA 207
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+IIEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI P
Sbjct: 208 VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAP 267
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D LCL K +TGG + LS +TT ++ + F+H ++ GNPLAC AA A+L I
Sbjct: 268 DILCLGKALTGGTMTLSATLTTREVAET-ISNGEAGCFMHGPTFMGNPLACAAANASLAI 326
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ Q+++ ++ + L + + R G I + P + K F
Sbjct: 327 LESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVE--TTHPVNMAALQKFF- 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 384 ---VEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 199 bits (507), Expect = 1e-56
Identities = 77/413 (18%), Positives = 146/413 (35%), Gaps = 39/413 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ G RY+D + +W + GH++ + +ALK + K + ++
Sbjct: 44 AYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVND 103
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
+ + + G A L++ Y + K I + YHG L
Sbjct: 104 AVP----SIEMVRFVNSGTEACMAVLRLMRAYT------GRDKIIKFEGCYHGHADMFLV 153
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN--EIARCAIFDLEILLKKNHNKIA 423
+ + P S + K +AN + ++ L +N +IA
Sbjct: 154 KAG------------SGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 201
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
+I+EP + G I+ D+ +L+ +REI ++ L+ DE+ G E +
Sbjct: 202 GVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA-YGGVQEKFGVT 259
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
PD L K I GG + +I + + + SGNPLA A + TLE
Sbjct: 260 PDLTTLGKIIGGGLPVGA-YGGKREIMQLVA---PAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINF--RQKGMIWAF--DVIIEDPEQIETF 599
+ + + + Q K+++ L ++ + GM F + + + E +
Sbjct: 316 LLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKS 375
Query: 600 S----KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+F L+ + L P + +I +A + L
Sbjct: 376 DLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSAL 427
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 179 bits (453), Expect = 2e-49
Identities = 90/410 (21%), Positives = 171/410 (41%), Gaps = 21/410 (5%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S + G+ LD S + GH + I + KL+H + S + +PV+ L+ +
Sbjct: 33 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEMLSRPVVDLATR 91
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L+++T L S GA + E A++M+ K + + S+HG T A +
Sbjct: 92 LANITPPGLDRALLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQSWHGMTGAAAS 145
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
T K + + + I R + N A + + +++ +++ +AA
Sbjct: 146 ATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF 205
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I EP + +GG+I Y+ ++ C + LI DE G GRTG FAC+ + PD
Sbjct: 206 IAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD 264
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L LSK + G ++V +I + + +L ++ +PL L L++
Sbjct: 265 ILTLSKTLGAGLPLAAIVT-----SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 319
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVII--EDPEQIETFSKK 602
+D ++ R + ++ + L L+ I + R +G++ +++ E + K
Sbjct: 320 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAK 379
Query: 603 FFVAALKNELL-----LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+ L L +G + PP ++++EI S + Q
Sbjct: 380 ITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase D, RluD {Escherichia coli [TaxId: 562]}
Length = 250
Score = 149 bits (376), Expect = 4e-41
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 6 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 65
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 66 TTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 125
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA+T+Y + + + +R L+TGRTHQIRVHM + H +VGD +YG
Sbjct: 126 HP--MGKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 179
Query: 207 KYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 180 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 233
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 152 bits (383), Expect = 7e-40
Identities = 79/435 (18%), Positives = 143/435 (32%), Gaps = 52/435 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP----VIK 301
+ L+ G R LD S G+S+ + K ++ N + L P V K
Sbjct: 45 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEK 104
Query: 302 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG------------------- 342
L E L S+ + + G+ + E A K F ++ +K
Sbjct: 105 LRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQA 164
Query: 343 -FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK----TYIITTPDSRNINKG 397
+ ++HG T+G LA T+ ++ +I + + P + +
Sbjct: 165 PGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKEN 224
Query: 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457
+ DL + +K +A II+EP +Q GG + + +R+I +
Sbjct: 225 QQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKHGC 283
Query: 458 HLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY 515
+ DE+ G G TGKF+A EH + D + SK + G + Y
Sbjct: 284 AFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNT 343
Query: 516 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKI 574
+ N + ++L + K + L L +P+
Sbjct: 344 WLGDPSKNLLLAEVINIIKRE------------DLLSNAAHAGKVLLTGLLDLQARYPQF 391
Query: 575 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKN 632
I R +G +FD E K A ++L G ++ P + +
Sbjct: 392 ISRVRGRGTFCSFDTPDES------IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDH 445
Query: 633 EIQHMTSAIFQTFNE 647
+ +
Sbjct: 446 HAHLFLNIFSDILAD 460
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine
synthase C, RluC {Escherichia coli [TaxId: 562]}
Length = 227
Score = 141 bits (355), Expect = 2e-38
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
I+YED+ I++LNK +G VH G G + + L + P +VHRLD+++SG+
Sbjct: 3 IMYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP---EARFLELVHRLDRDTSGV 58
Query: 91 MVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKN 149
++VAK + L QL+ +Q+ YLA+V G + A +++N + V +
Sbjct: 59 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS 118
Query: 150 FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS 209
KP+ T ++ +L+RC+ TGRTHQIRVH Q+ GH I D+ YG +
Sbjct: 119 QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 174
Query: 210 ------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
NR LHA L HP ++ + + + + +
Sbjct: 175 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 220
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 113 bits (284), Expect = 3e-27
Identities = 47/449 (10%), Positives = 111/449 (24%), Gaps = 57/449 (12%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH--------KP 298
K T + + S L + +I+ + + M + + +
Sbjct: 16 KRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRS 75
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L+E + ++ Y+ + G A ++ + + + L++ K + N +
Sbjct: 76 YYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
T G + + + G + + LE +++
Sbjct: 134 TTQGHSQINGCT--------------VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV 179
Query: 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTG 472
I+ + + G LK + I Y+I ++ D R
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 473 KFFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH 524
++ +I + + K L + + +
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 525 SHSYSGNPLACCAALAT-LEIFNKDNILQRISQDMKKITKALTSLI-------THPKIIN 576
+Y G LA L + L ++ + L + H ++
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVD 359
Query: 577 FRQKGMIWAFDVIIEDPEQIETF----------SKKFFVAALKNELLLRPIGNTVYL-MP 625
+ D E + K L + L +P
Sbjct: 360 AGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419
Query: 626 PYILNKNEIQHMTSAIFQTFNELDEVINL 654
+ + + A + L
Sbjct: 420 RATYTQTHMDFIIEAFKHVKENAANIKGL 448
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 102 bits (255), Expect = 2e-23
Identities = 57/448 (12%), Positives = 112/448 (25%), Gaps = 58/448 (12%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYI--------NKALKNQLNKLEHVMLSNLTHKP 298
++ + + + + L S YI N +Q + + +
Sbjct: 17 RVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRN 76
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L +K L Y + G A + + Y +G FI +++H
Sbjct: 77 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI---SNFHF 131
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
+T A N I T + I L+ + ++
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWK-------------GDFDIKKLKENIAQH 178
Query: 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTG 472
I+ + + G LK V EI + I ++ D R
Sbjct: 179 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 238
Query: 473 KFFACEHAEIWP------DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 526
K+ E+ D L +S LV D +
Sbjct: 239 KYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFV 298
Query: 527 SYSGNPLACCAAL--ATLEIFNKDNILQRISQD-------MKKITKALTSLITH------ 571
+Y G AA+ E ++ + RI Q + H
Sbjct: 299 TYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDC 358
Query: 572 ----PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL-MPP 626
P+I + + +E + + L +
Sbjct: 359 KKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIAR 418
Query: 627 YILNKNEIQHMTSAIFQTFNELDEVINL 654
+ + + ++ A+ + + L
Sbjct: 419 RVYTNDHMDYIADALIGLKEKFATLKGL 446
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 50.9 bits (121), Expect = 5e-07
Identities = 48/355 (13%), Positives = 91/355 (25%), Gaps = 53/355 (14%)
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L + + L +K H G A + G +H
Sbjct: 77 FYHLEKTVKELFGFK--HIVPTHQGRGAENLL----SQLAIKPGQYVAGNMYFTTTRFHQ 130
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
E GA V + + P +I+ + L L+K+
Sbjct: 131 EKNGATFVDIV--------RDEAHDASLNLPFKGDID------------LNKLATLIKEK 170
Query: 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD-----EIAVGCGRTGK 473
+ A I + G ++ V E+ + Y I + D E A
Sbjct: 171 GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEA 230
Query: 474 FFA-----------CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF 522
+ +A+ + K L M ++++++ +
Sbjct: 231 GYENVSIKDIVHEMFSYADGC--TMSGKKDCLVNIGGF-LCMNDEEMFSAAKELVVVYEG 287
Query: 523 LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL-TSLITHPKIINFRQKG 581
+ S+ A+ E + I R+ Q + L L I G
Sbjct: 288 MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQV-----RYLGDKLREAGVPIVEPTGG 342
Query: 582 MIWAFDVIIEDPE-QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 635
D P + F + A++ E +R + + E
Sbjct: 343 HAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG-IVSAGRSKETGENH 396
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine
516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Length = 174
Score = 38.3 bits (88), Expect = 0.001
Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 44/217 (20%)
Query: 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVV 93
E+ + +LNK G V G+ T++ + RLD +++GL+++
Sbjct: 1 EEGQYFMLNKPQGCVCSNDDGDYP-TIYQFFDYPLA-----GKLHSAGRLDVDTTGLVLL 54
Query: 94 AKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAK 153
+ + + + + N + +
Sbjct: 55 TDDGQWSHRITSPKHHCEKTYLV------------TLADPVEENYSAACAEGILLRGEKE 102
Query: 154 PALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI 213
P + + + GR HQ++ LG+ +V
Sbjct: 103 PTKPAK-------LEILDDYNVNLTISEGRYHQVKRMFAALGNKVV-------------- 141
Query: 214 FNRQALHAYKLGLIHPKNNLKL-KWRINLPDDISKLI 249
LH +K+G + +L+ ++R +I KL+
Sbjct: 142 ----GLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV 174
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine
516 synthase RsuA {Escherichia coli [TaxId: 562]}
Length = 172
Score = 35.9 bits (82), Expect = 0.009
Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 44/212 (20%)
Query: 39 IILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIK 98
+LNK G V + T+ L E + RLD +++GL+++
Sbjct: 4 FMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA-----WKLHAAGRLDIDTTGLVLMTD--- 54
Query: 99 SYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTY 158
Q I ++ + L + +++ K+
Sbjct: 55 -----DGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA---- 105
Query: 159 YERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQA 218
++ + +R + GR HQ++ +G+ +V
Sbjct: 106 -------VLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVV------------------E 140
Query: 219 LHAYKLGLIHPKNNLKL-KWRINLPDDISKLI 249
LH ++G I +L ++R ++I+ ++
Sbjct: 141 LHRERIGGITLDADLAPGEYRPLTEEEIASVV 172
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
{Haemophilus influenzae [TaxId: 727]}
Length = 174
Score = 33.2 bits (75), Expect = 0.084
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 11/134 (8%)
Query: 723 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLK 782
QK+ G + R D + ++ I + +KI + C Q R
Sbjct: 22 TIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACE--------QCGRNI 73
Query: 783 KVGLDYYNHNLDTSPKLYGD--IISTRDYENRLNTLKNVRNVGINICCGGIIGLSES-RD 839
+ D + G + + TL + G+ + G GLS
Sbjct: 74 VPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIA 133
Query: 840 QRAELIFQLANLNP 853
Q + F L
Sbjct: 134 QTEQQGFTEILLGK 147
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 30.9 bits (69), Expect = 0.74
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 465
+ D E + + + A+++ G + + L + ++ +L++DEI
Sbjct: 149 GFVPDPERVRRAITPRTKALVV-NSPNNPTGAVYPKEVLEALA-RLAVEHDFYLVSDEIY 206
Query: 466 VGCGRTGKFFACEHAEIWPD----FLCLSK--GITG---GYL 498
G+ F+ + P+ +K +TG GY
Sbjct: 207 EHLLYEGEHFSP--GRVAPEHTLTVNGAAKAFAMTGWRIGYA 246
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 31.2 bits (71), Expect = 0.75
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 919 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
SIF+ D N + D ++LL +GIN
Sbjct: 20 AGRSIFFVDDQFVKQNQRIKDYARLLASVGIN 51
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 30.2 bits (67), Expect = 1.2
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 464
+++ L K +K A+II G ++ ++ + +++ +I+DE+
Sbjct: 148 NVDELKKYVTDKTRALII-NSPCNPTGAVLTKKDLEEIA-DFVVEHDLIVISDEV 200
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 30.1 bits (68), Expect = 1.3
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 919 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
S++ L + D +++ LGIN
Sbjct: 21 AGLSLWDWGSLPNYLAPRYTDYARINASLGIN 52
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 29.5 bits (65), Expect = 2.4
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 119 MVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCN 178
++W +P +G + + I ++S N N P+ ++ + K ++ +
Sbjct: 447 LLWEMPGNDGYLQLVGIMQKF--IDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 504
Query: 179 LKT 181
+KT
Sbjct: 505 VKT 507
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB
{Escherichia coli [TaxId: 562]}
Length = 242
Score = 28.2 bits (62), Expect = 4.7
Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVA- 94
N +++L+K G+ + A+ + + N RAG LD ++G++ +
Sbjct: 4 NGVLLLDKPQGMSSNDALQKVKR------------IYNANRAGHTGALDPLATGMLPICL 51
Query: 95 -----------KSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIK 143
S K Y ++ A + + +A + + +
Sbjct: 52 GEATKFSQYLLDSDKRYR---VIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFR 108
Query: 144 MTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
+ + + AL Y + + T H
Sbjct: 109 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN 158
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 28.2 bits (62), Expect = 4.9
Identities = 25/248 (10%), Positives = 60/248 (24%), Gaps = 48/248 (19%)
Query: 573 KIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRP-------------- 616
K+ +F K F P E+ E + FF+ N +R
Sbjct: 8 KVFSFYSKATKKGFSPF-FVPALEKAEEPAGNFFLDRKGNLFSIREDFTKTVLNHRKRYS 66
Query: 617 ---------IGNTVYLMPPYILN--KNEIQHMTSAIFQTFNELDEVINLFNLPFNDLLFR 665
++ + ++ + E+ E+I F +
Sbjct: 67 PDSQIKVWYADFVYRYSGSDLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVI 126
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYN--TEITATKILSIESVITA 723
+ H ++ L E + + ++ K + + V
Sbjct: 127 VEIGHTGVYEDL-------LKEIPKDLHEKVLNLIDTKNLAEIEFLSHMKKIDLSRVEKI 179
Query: 724 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK 783
+ + + DL + + + E + + L +
Sbjct: 180 IEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFP-TVSVEIDLTLAR--------- 229
Query: 784 VGLDYYNH 791
++ Y
Sbjct: 230 -TIEEYCG 236
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 28.6 bits (63), Expect = 5.0
Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 2/139 (1%)
Query: 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 385
++ + + ++ L ++ L A+ V + F E+ + +
Sbjct: 219 ILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKV--LMKFLELLPKDSDYYNM 276
Query: 386 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYL 445
+ + + S + L+ + +I I+ I L
Sbjct: 277 LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKL 336
Query: 446 KLVREICNNYNIHLIADEI 464
++ + + NI + E+
Sbjct: 337 DIMIRLASQANIAQVLAEL 355
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.2 bits (62), Expect = 5.5
Identities = 31/325 (9%), Positives = 93/325 (28%), Gaps = 24/325 (7%)
Query: 509 IYNSIYYKNN-------INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561
++ S+ +N N + S NP AL + + + + ++ KI
Sbjct: 88 LFISVLVNSNSELIRLINNAIKN-DLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKI 146
Query: 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTV 621
A + + + +Q + + P+ + V L N+ L +
Sbjct: 147 LVAGDT------MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAAT 200
Query: 622 YLMP--------PYILNKNEIQHMTSAIFQTFNELDEVINLFNLPFNDLLFRAQKVHRKY 673
L+ + + + S I + + + + +P L + ++ + Y
Sbjct: 201 SLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY 260
Query: 674 FDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGAT 733
+ + L+ P+S +L E++
Sbjct: 261 PPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVL-FEAISLIIHHDSEPNLL 319
Query: 734 RFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793
+ L+ R+ + + + + + + + + + + +
Sbjct: 320 VRACNQLGQFLQHRETNLRYLALESMCTL-ASSEFSHEAVKTHIETVINALKTERDVSVR 378
Query: 794 DTSPKLYGDIISTRDYENRLNTLKN 818
+ L + + + + + +
Sbjct: 379 QRAVDLLYAMCDRSNAQQIVAEMLS 403
>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate
decarboxylase {Plasmodium falciparum (isolate 3D7)
(Plasmodium falciparum 3D7) [TaxId: 36329]}
Length = 323
Score = 28.1 bits (61), Expect = 6.3
Identities = 35/244 (14%), Positives = 69/244 (28%), Gaps = 10/244 (4%)
Query: 257 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH 316
I ++ N ++ + I K LK + + L P + E+ S Y H
Sbjct: 26 EKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNH 85
Query: 317 -CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA------VTNI 369
CFY + + + KM+F ++ G + + + + + + + N
Sbjct: 86 FCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNT 145
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ K+ T N + +L K N
Sbjct: 146 VKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPD---SAIF 202
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+ I + + + N+ + I G +P+ L
Sbjct: 203 QKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYIL 262
Query: 490 SKGI 493
S GI
Sbjct: 263 SPGI 266
>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease,
N-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 74
Score = 25.5 bits (56), Expect = 9.5
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 588 VIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLM 624
VI+ D I S + + N L L + +YL+
Sbjct: 11 VIVFDKNGISKLSARHYGNVEGNFLSLSLV-EALYLI 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.407
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,618,995
Number of extensions: 176681
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 43
Length of query: 965
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 871
Effective length of database: 1,116,976
Effective search space: 972886096
Effective search space used: 972886096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)