Query psy8200
Match_columns 530
No_of_seqs 328 out of 582
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 21:12:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 75.8 13 0.00044 37.3 9.8 76 124-203 38-118 (270)
2 1gh9_A 8.3 kDa protein (gene M 68.7 2.3 7.9E-05 34.6 2.1 26 493-522 3-28 (71)
3 2k5c_A Uncharacterized protein 57.0 2.4 8.2E-05 35.7 0.1 38 474-511 8-68 (95)
4 2kwq_A Protein MCM10 homolog; 47.2 6.3 0.00021 33.6 1.2 35 492-527 13-60 (92)
5 2kra_A Prokineticin BV8; beta 41.4 10 0.00034 31.1 1.5 14 512-525 52-66 (77)
6 2jne_A Hypothetical protein YF 34.2 23 0.00077 30.7 2.6 15 475-489 33-47 (101)
7 1lko_A Rubrerythrin all-iron(I 33.8 17 0.00057 34.1 2.0 27 472-502 153-179 (191)
8 2js4_A UPF0434 protein BB2007; 32.0 15 0.00053 29.5 1.2 36 471-508 5-40 (70)
9 2hf1_A Tetraacyldisaccharide-1 29.6 15 0.00053 29.4 0.8 36 471-508 5-40 (68)
10 2jr6_A UPF0434 protein NMA0874 29.1 16 0.00055 29.3 0.8 36 471-508 5-40 (68)
11 3pwf_A Rubrerythrin; non heme 28.7 22 0.00075 32.9 1.8 25 473-502 137-161 (170)
12 2k2d_A Ring finger and CHY zin 28.2 15 0.00052 30.2 0.5 38 458-503 25-64 (79)
13 1vfy_A Phosphatidylinositol-3- 28.1 23 0.00079 28.1 1.6 38 458-502 2-43 (73)
14 1z2q_A LM5-1; membrane protein 27.4 38 0.0013 27.6 2.8 47 454-504 5-55 (84)
15 2kdx_A HYPA, hydrogenase/ureas 27.3 22 0.00074 30.7 1.4 31 494-529 73-105 (119)
16 3a43_A HYPD, hydrogenase nicke 26.7 17 0.00058 32.6 0.6 72 414-488 4-84 (139)
17 3t7l_A Zinc finger FYVE domain 26.2 28 0.00097 28.8 1.9 46 454-503 4-53 (90)
18 3qsz_A STAR-related lipid tran 24.9 3.6E+02 0.012 23.8 12.0 96 111-223 50-152 (189)
19 2pk7_A Uncharacterized protein 24.5 17 0.00059 29.2 0.2 36 471-508 5-40 (69)
20 1d0q_A DNA primase; zinc-bindi 23.9 22 0.00076 29.9 0.8 34 490-523 33-67 (103)
21 1qxf_A GR2, 30S ribosomal prot 23.3 32 0.0011 27.6 1.6 40 471-513 4-43 (66)
22 2avu_E Flagellar transcription 21.4 32 0.0011 32.9 1.4 34 468-501 128-161 (192)
23 2l4z_A DNA endonuclease RBBP8, 20.1 48 0.0016 28.6 2.2 60 442-503 27-97 (123)
24 3lpe_B DNA-directed RNA polyme 20.0 46 0.0016 26.0 1.8 22 475-504 2-23 (59)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=75.83 E-value=13 Score=37.33 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=49.2
Q ss_pred eeeeeee--eecCCC-ceEEEEEEEeeccChhHHHHHHhCCceEEEEEEEEE-eCCCCEEEEEEEeccc-cceEEEEEEE
Q psy8200 124 GCEVLSD--ETSEDT-SERITERRFKLIVEAPYLIKKIIGVDFVYFLQRNEL-DWRNRTLEIESKNETF-SNRVIVLEKC 198 (530)
Q Consensus 124 svDVLeR--~vd~dG-~l~tteRLi~~~~~lP~WlkKilG~~~v~~vEeS~V-Dpk~rtL~i~TrNlSf-ss~~~V~E~c 198 (530)
+++||.. +.+++| .=.+|+++..+...+|+|+++++..+...+.|++.- .|-.+ |+.| |-=+ .+|....|+
T Consensus 38 GVEvl~Nepy~~~~g~~GqYT~Kiyhl~sklP~wi~~~~P~~al~v~EkaWNayPy~~--T~yt-~~~~~~kF~i~IET- 113 (270)
T 1kcm_A 38 GVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCR--TVIT-NEYMKEDFLIKIET- 113 (270)
T ss_dssp TEEEEEEEEEECTTSCEEEEEEEEEECGGGSCHHHHTTSCTTTTEEEEEEEEETTEEE--EEEE-ETTTGGGEEEEEEE-
T ss_pred eEEEEeccccccCCCCccceEEEEEEccccChHHHHHhCCccceEEEeehhccCccee--eEec-CCCcCcceEEEEEE-
Confidence 3455443 233233 345568999999999999999998777778888772 45444 4455 4334 357777776
Q ss_pred EEEeC
Q psy8200 199 RYFVH 203 (530)
Q Consensus 199 ~Y~ph 203 (530)
.|.++
T Consensus 114 ~h~~d 118 (270)
T 1kcm_A 114 WHKPD 118 (270)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 55554
No 2
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=68.71 E-value=2.3 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=15.7
Q ss_pred EEEeCCCCCccccCCCCCCCCceEeccCCC
Q psy8200 493 HVVKCVHCNEATPVKNAPAGKKYVRCPYGV 522 (530)
Q Consensus 493 ~vv~c~~c~eat~~~~~p~gk~~~rc~c~~ 522 (530)
.||.|+ |+-+.-++. |.|-..|||+-
T Consensus 3 ~vv~C~-C~~~~~~~~---~~kT~~C~CG~ 28 (71)
T 1gh9_A 3 IIFRCD-CGRALYSRE---GAKTRKCVCGR 28 (71)
T ss_dssp EEEEET-TSCCEEEET---TCSEEEETTTE
T ss_pred EEEECC-CCCEEEEcC---CCcEEECCCCC
Confidence 356666 666655443 66666666653
No 3
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=56.96 E-value=2.4 Score=35.73 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=27.9
Q ss_pred eEEecccceeeeecceeee-----------------------EEEeCCCCCccccCCCCCC
Q psy8200 474 MVTCRVCQAMIDISGKRDQ-----------------------HVVKCVHCNEATPVKNAPA 511 (530)
Q Consensus 474 ~v~c~vc~~~i~~~~~~~q-----------------------~vv~c~~c~eat~~~~~p~ 511 (530)
+-.|.+|++.+|-+.-.+| -|.||++|+|---=++-|.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~ 68 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPR 68 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCT
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCCh
Confidence 5679999999886655555 4899999999765554443
No 4
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=47.15 E-value=6.3 Score=33.61 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=22.0
Q ss_pred eEEEeCCCCCccccCCCCC-------------CCCceEeccCCCCCccc
Q psy8200 492 QHVVKCVHCNEATPVKNAP-------------AGKKYVRCPYGVGMTNL 527 (530)
Q Consensus 492 q~vv~c~~c~eat~~~~~p-------------~gk~~~rc~c~~~~~~~ 527 (530)
=.||.|.+|+ -|-.++++ +-|+|++|+|+.--+.|
T Consensus 13 ~~av~C~~C~-yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~C~~Rt~sl 60 (92)
T 2kwq_A 13 CRVVTCKTCK-YTHFKPKETCVSENHDFHWHNGVKRFFKCPCGNRTISL 60 (92)
T ss_dssp EEEEEETTTC-CEESSCCHHHHHTTCCEEEEEEECEEEECTTSCEEEES
T ss_pred EEEEEccCCc-ceecCcchhHHhcCCceEEEeeeEEEEECCCCCceeEe
Confidence 3567777777 34444333 46888888888654433
No 5
>2kra_A Prokineticin BV8; beta strands, beta turn, helix, disulfide bond, secreted, CO protein; NMR {Bombina variegata}
Probab=41.44 E-value=10 Score=31.10 Aligned_cols=14 Identities=43% Similarity=0.897 Sum_probs=11.4
Q ss_pred CCceE-eccCCCCCc
Q psy8200 512 GKKYV-RCPYGVGMT 525 (530)
Q Consensus 512 gk~~~-rc~c~~~~~ 525 (530)
|++|. ||||..|++
T Consensus 52 g~~~~~~CPC~~GL~ 66 (77)
T 2kra_A 52 GKRLSSLCPCKSGLT 66 (77)
T ss_dssp SCCCCSSCCBCTTCC
T ss_pred CcceeeeCCCCCCCe
Confidence 76666 999999875
No 6
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.19 E-value=23 Score=30.67 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=11.1
Q ss_pred EEecccceeeeecce
Q psy8200 475 VTCRVCQAMIDISGK 489 (530)
Q Consensus 475 v~c~vc~~~i~~~~~ 489 (530)
..|.+||+.++-.|.
T Consensus 33 ~~CP~Cq~eL~~~g~ 47 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG 47 (101)
T ss_dssp CBCSSSCSBEEEETT
T ss_pred ccCccCCCcceecCC
Confidence 678888888776654
No 7
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=33.78 E-value=17 Score=34.05 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=17.6
Q ss_pred cceEEecccceeeeecceeeeEEEeCCCCCc
Q psy8200 472 VPMVTCRVCQAMIDISGKRDQHVVKCVHCNE 502 (530)
Q Consensus 472 ~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~e 502 (530)
...-.|++|++..+ |..- --+||.|+-
T Consensus 153 ~~~~~C~~CG~~~~--g~~~--p~~CP~C~~ 179 (191)
T 1lko_A 153 ATKWRCRNCGYVHE--GTGA--PELCPACAH 179 (191)
T ss_dssp EEEEEETTTCCEEE--EEEC--CSBCTTTCC
T ss_pred CceEEECCCCCEee--CCCC--CCCCCCCcC
Confidence 45788999999987 4210 016777753
No 8
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=31.97 E-value=15 Score=29.51 Aligned_cols=36 Identities=22% Similarity=0.500 Sum_probs=27.9
Q ss_pred CcceEEecccceeeeecceeeeEEEeCCCCCccccCCC
Q psy8200 471 QVPMVTCRVCQAMIDISGKRDQHVVKCVHCNEATPVKN 508 (530)
Q Consensus 471 ~~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~eat~~~~ 508 (530)
.+..+.|.+|..-...... .....|+.|+.|-||+.
T Consensus 5 LL~iL~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQRA--QAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCCCBCTTTCCBEEEETT--TTEEEETTTTEEEEEET
T ss_pred HhhheECCCCCCcCEEeCC--CCEEEcCCCCceecCCC
Confidence 5678899999998777643 23356999999999874
No 9
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.58 E-value=15 Score=29.37 Aligned_cols=36 Identities=17% Similarity=0.423 Sum_probs=27.8
Q ss_pred CcceEEecccceeeeecceeeeEEEeCCCCCccccCCC
Q psy8200 471 QVPMVTCRVCQAMIDISGKRDQHVVKCVHCNEATPVKN 508 (530)
Q Consensus 471 ~~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~eat~~~~ 508 (530)
.+..+.|.+|..-...... .....|+.|+.|-||+.
T Consensus 5 LL~iL~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFDKS--KDELICKGDRLAFPIKD 40 (68)
T ss_dssp CEEECBCTTTCCBCEEETT--TTEEEETTTTEEEEEET
T ss_pred HhhheECCCCCCcCeEeCC--CCEEEcCCCCcEecCCC
Confidence 5678899999987776543 23456999999999875
No 10
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.15 E-value=16 Score=29.26 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=27.7
Q ss_pred CcceEEecccceeeeecceeeeEEEeCCCCCccccCCC
Q psy8200 471 QVPMVTCRVCQAMIDISGKRDQHVVKCVHCNEATPVKN 508 (530)
Q Consensus 471 ~~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~eat~~~~ 508 (530)
.+..+.|.+|..-....... ....|+.|+.|-||+.
T Consensus 5 LL~iL~CP~ck~~L~~~~~~--~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQDK--QELWSRQAKLAYPIKD 40 (68)
T ss_dssp SSCCCBCSSSCCBCEEETTT--TEEEETTTTEEEEEET
T ss_pred HhhheECCCCCCcCeEeCCC--CEEEcCCCCcEecCCC
Confidence 56788999999877765432 3456999999999875
No 11
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.72 E-value=22 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=18.1
Q ss_pred ceEEecccceeeeecceeeeEEEeCCCCCc
Q psy8200 473 PMVTCRVCQAMIDISGKRDQHVVKCVHCNE 502 (530)
Q Consensus 473 p~v~c~vc~~~i~~~~~~~q~vv~c~~c~e 502 (530)
..-.|++|+++.+ +.. -.+||+|+-
T Consensus 137 ~~~~C~~CG~i~~--~~~---p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAV--DEA---PEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEE--SCC---CSBCTTTCC
T ss_pred CeeEeCCCCCeeC--CCC---CCCCCCCCC
Confidence 4667999999988 322 228999973
No 12
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=28.18 E-value=15 Score=30.16 Aligned_cols=38 Identities=24% Similarity=0.565 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCcceEEecccceeeeecceeeeEEE--eCCCCCcc
Q psy8200 458 DELPPPYQASQPGQVPMVTCRVCQAMIDISGKRDQHVV--KCVHCNEA 503 (530)
Q Consensus 458 ~~~~p~~~~~~~~~~p~v~c~vc~~~i~~~~~~~q~vv--~c~~c~ea 503 (530)
-.+|++|+- ..-.|.|..|++..++.- |++ ||+.|.--
T Consensus 25 ~pmP~~y~~----~~v~I~CnDC~~~s~v~~----h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 25 TPMPSEYQN----MTVDILCNDCNGRSTVQF----HILGMKCKICESY 64 (79)
T ss_dssp --------C----CEEEEEESSSCCEEEEEC----CTTCCCCTTTSCC
T ss_pred CCCCHHHhC----CEeEEECCCCCCCccCCc----eeecccCcCCCCc
Confidence 346777753 233699999999887653 677 99999743
No 13
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.09 E-value=23 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCCCCcceEEecccceeeeecceeee----EEEeCCCCCc
Q psy8200 458 DELPPPYQASQPGQVPMVTCRVCQAMIDISGKRDQ----HVVKCVHCNE 502 (530)
Q Consensus 458 ~~~~p~~~~~~~~~~p~v~c~vc~~~i~~~~~~~q----~vv~c~~c~e 502 (530)
.+.||.|.|.. .|..|+..+++..++|. --+-|+.|..
T Consensus 2 ~~~~p~W~~~~-------~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 2 SKTPADWIDSD-------ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp -----CCCCCS-------BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCccCC-------cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 46789999742 69999999887755542 1244555544
No 14
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.35 E-value=38 Score=27.58 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEecccceeeeecceeee----EEEeCCCCCccc
Q psy8200 454 PIPPDELPPPYQASQPGQVPMVTCRVCQAMIDISGKRDQ----HVVKCVHCNEAT 504 (530)
Q Consensus 454 s~~~~~~~p~~~~~~~~~~p~v~c~vc~~~i~~~~~~~q----~vv~c~~c~eat 504 (530)
+++..+.+|.|.|... ...|..|+..+++..++|. --|-|+.|....
T Consensus 5 ~~~~~~~~~~W~pd~~----~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 5 SMGEKQSKGYWQEDED----APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCTTCCCSCCCCTTT----CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cccccCCCCccccCCC----CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 5667778899998654 4478899999888766553 134566665543
No 15
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.33 E-value=22 Score=30.72 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEeCCCCCccccCCCCCCCCceE-ecc-CCCCCccccC
Q psy8200 494 VVKCVHCNEATPVKNAPAGKKYV-RCP-YGVGMTNLYS 529 (530)
Q Consensus 494 vv~c~~c~eat~~~~~p~gk~~~-rc~-c~~~~~~~~~ 529 (530)
..+|..|+.-..+..+ +. +|| |+.....+-+
T Consensus 73 ~~~C~~CG~~~e~~~~-----~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 73 ELECKDCSHVFKPNAL-----DYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp EEECSSSSCEECSCCS-----TTCCCSSSSSCCCEEEE
T ss_pred eEEcCCCCCEEeCCCC-----CCCcCccccCCCcEEec
No 16
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.75 E-value=17 Score=32.58 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhHhhhhcc----hhhhhhhcCccCCCccc--ccCCCCCCCCCCCCCCCCC---CCCCcceEEecccceee
Q psy8200 414 FNVYISVVQALQFWYQQG----VLYRLKALGERHNMDIT--IEGQNPIPPDELPPPYQAS---QPGQVPMVTCRVCQAMI 484 (530)
Q Consensus 414 f~~~~~~vq~lq~~YQ~~----~ly~~~alg~~~~md~t--vegf~s~~~~~~~p~~~~~---~~~~~p~v~c~vc~~~i 484 (530)
+|+.+++|+.+.-.=+.. ..--...+|+-...|-- -..|..+..+ ++..-. ....-+...|+.|++..
T Consensus 4 ~sia~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~~~g---t~~e~A~L~i~~~p~~~~C~~CG~~~ 80 (139)
T 3a43_A 4 WALADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQLFAG---TIAEGAEIEFVEEEAVFKCRNCNYEW 80 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHHHTT---STTTTCEEEEEEECCEEEETTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHHHcC---CcccCCEEEEEecCCcEECCCCCCEE
Confidence 678888888776544332 22223455665544432 1112222111 111100 00123478899999988
Q ss_pred eecc
Q psy8200 485 DISG 488 (530)
Q Consensus 485 ~~~~ 488 (530)
.+..
T Consensus 81 ~~~~ 84 (139)
T 3a43_A 81 KLKE 84 (139)
T ss_dssp EGGG
T ss_pred eccc
Confidence 7754
No 17
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.17 E-value=28 Score=28.77 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEecccceeeeecceeee----EEEeCCCCCcc
Q psy8200 454 PIPPDELPPPYQASQPGQVPMVTCRVCQAMIDISGKRDQ----HVVKCVHCNEA 503 (530)
Q Consensus 454 s~~~~~~~p~~~~~~~~~~p~v~c~vc~~~i~~~~~~~q----~vv~c~~c~ea 503 (530)
....++.+|.|.|... .-.|..|+..+++..++|. --|-|..|...
T Consensus 4 ~~~l~~~~p~W~~d~~----~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 4 GLVLGQKQPTWVPDSE----APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp -CCTTTSCCCCCCGGG----CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred hcccCCCCCcCccccc----CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3445667899998643 3469999998887766553 23445555544
No 18
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=24.95 E-value=3.6e+02 Score=23.77 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=54.6
Q ss_pred hcCCCCCCCCceeeeeeeeeeecCCCceEEEEEEEeeccChhHHHHHHhCCceEEEEEEEEEeCCCCEEEEEEEeccc--
Q psy8200 111 RRFPTCPLIPLLVGCEVLSDETSEDTSERITERRFKLIVEAPYLIKKIIGVDFVYFLQRNELDWRNRTLEIESKNETF-- 188 (530)
Q Consensus 111 rKYPN~P~~pHVlsvDVLeR~vd~dG~l~tteRLi~~~~~lP~WlkKilG~~~v~~vEeS~VDpk~rtL~i~TrNlSf-- 188 (530)
..||. ..+.+.+.++|++ +++.. ++....++| |. ..+.-+++..+..+..++++.+.... .+
T Consensus 50 ~~~~~--W~~~~~~~~vle~--~~~~~------i~y~~~~~p-~p----~~~RD~v~~~~~~~~~~g~~~i~~~~-~~~~ 113 (189)
T 3qsz_A 50 NAFRQ--WMPDVAASELLKA--TDTEQ------YHYLDNSAP-WP----VSNRDGVYHFTYEKAGDGAITVRVEA-VPDY 113 (189)
T ss_dssp GGGGG--TSTTEEEEEEEEE--CSSEE------EEEEEECCS-SS----CCCEEEEEEEEEEECTTSCEEEEEEE-CTTS
T ss_pred HHhhh--HHHhcCEEEEEee--cCCce------EEEEEeecC-CC----cCCcceEEEEEEEECCCCeEEEEEEc-CCCc
Confidence 45663 6788999999999 44322 222233455 21 24555665555544433566554333 34
Q ss_pred ----cceEEEEE-EEEEEeCCCCCCccEEEEEEEEEEecc
Q psy8200 189 ----SNRVIVLE-KCRYFVHPENPDWTCFEQNAELDVKSF 223 (530)
Q Consensus 189 ----ss~~~V~E-~c~Y~phPeNP~wT~f~QeA~I~issf 223 (530)
.+++.+.- .+.|.-.| +++.|.++-.+.++.+|.
T Consensus 114 ~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~ 152 (189)
T 3qsz_A 114 LPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGS 152 (189)
T ss_dssp SCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSS
T ss_pred cCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCC
Confidence 34443332 35565555 667898888888887664
No 19
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.46 E-value=17 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.452 Sum_probs=27.4
Q ss_pred CcceEEecccceeeeecceeeeEEEeCCCCCccccCCC
Q psy8200 471 QVPMVTCRVCQAMIDISGKRDQHVVKCVHCNEATPVKN 508 (530)
Q Consensus 471 ~~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~eat~~~~ 508 (530)
.+..+.|.+|..-...... .....|+.|+.+-||+.
T Consensus 5 LLeiL~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSAD--KTELISKGAGLAYPIRD 40 (69)
T ss_dssp GGGTCCCTTTCCCCEECTT--SSEEEETTTTEEEEEET
T ss_pred HHhheeCCCCCCcCeEeCC--CCEEEcCCCCcEecCcC
Confidence 4567899999988776543 23456999999999875
No 20
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=23.91 E-value=22 Score=29.94 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.5
Q ss_pred eeeEEEeCCCCCccccCCCCCCCCceEecc-CCCC
Q psy8200 490 RDQHVVKCVHCNEATPVKNAPAGKKYVRCP-YGVG 523 (530)
Q Consensus 490 ~~q~vv~c~~c~eat~~~~~p~gk~~~rc~-c~~~ 523 (530)
-......|+-|+|-||.-.--++|....|. |+.|
T Consensus 33 G~~~~~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~g 67 (103)
T 1d0q_A 33 GRNYFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAG 67 (103)
T ss_dssp TTEEEECCSSSCCSSCCEEEETTTTEEEETTTCCE
T ss_pred CCeEEEECCCCCCCCCcEEEEcCCCEEEECCCCCC
Confidence 345788999999999855545678888997 5543
No 21
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.26 E-value=32 Score=27.64 Aligned_cols=40 Identities=28% Similarity=0.546 Sum_probs=28.6
Q ss_pred CcceEEecccceeeeecceeeeEEEeCCCCCccccCCCCCCCC
Q psy8200 471 QVPMVTCRVCQAMIDISGKRDQHVVKCVHCNEATPVKNAPAGK 513 (530)
Q Consensus 471 ~~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~eat~~~~~p~gk 513 (530)
.|=-|.|..|...=-|.++ -|.||+|..|+. .|-.|--||
T Consensus 4 ~Fm~VKCp~C~niq~VFSh-A~tvV~C~~Cg~--~L~~PTGGK 43 (66)
T 1qxf_A 4 RFVKVKCPDCEHEQVIFDH-PSTIVKCIICGR--TVAEPTGGK 43 (66)
T ss_dssp CEEEEECTTTCCEEEEESS-CSSCEECSSSCC--EEEECCSSS
T ss_pred eeEEEECCCCCCceEEEec-CceEEEcccCCC--EEeecCCcc
Confidence 4557899999887666654 689999999985 344444444
No 22
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=21.43 E-value=32 Score=32.85 Aligned_cols=34 Identities=15% Similarity=0.467 Sum_probs=25.9
Q ss_pred CCCCcceEEecccceeeeecceeeeEEEeCCCCC
Q psy8200 468 QPGQVPMVTCRVCQAMIDISGKRDQHVVKCVHCN 501 (530)
Q Consensus 468 ~~~~~p~v~c~vc~~~i~~~~~~~q~vv~c~~c~ 501 (530)
+++.+.+..|+.|..-+=..-..-++-++|+-|+
T Consensus 128 ~s~~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 128 ESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp HTTSEEEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred ccCceeeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 3478889999999887655554466778999999
No 23
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.07 E-value=48 Score=28.61 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=32.0
Q ss_pred cCCCcccc----cCCCCCCCCCCCCCCCCCCCCCcceEEecccceeeeecc-------eeeeEEEeCCCCCcc
Q psy8200 442 RHNMDITI----EGQNPIPPDELPPPYQASQPGQVPMVTCRVCQAMIDISG-------KRDQHVVKCVHCNEA 503 (530)
Q Consensus 442 ~~~md~tv----egf~s~~~~~~~p~~~~~~~~~~p~v~c~vc~~~i~~~~-------~~~q~vv~c~~c~ea 503 (530)
.-.||+++ ++.++...++..|+-.+. ...+.-.|..|...|.-.- ..|..-.+|..|+..
T Consensus 27 ~~km~~~~~~~~~~s~s~~~~~~~~~~~~~--~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 97 (123)
T 2l4z_A 27 QYKMDVTVIDTKDGSQSKLGGGGSGGHMGS--GGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQ 97 (123)
T ss_dssp TTBCCCCEECCCSSSCTTSCBTTTBSCCCC--SCSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCB
T ss_pred cceeeecccccccccccccCCCCCCCcccc--cCccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCc
Confidence 44566663 223333334444433222 3445678999998875221 123333688888854
No 24
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=20.02 E-value=46 Score=26.01 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=17.1
Q ss_pred EEecccceeeeecceeeeEEEeCCCCCccc
Q psy8200 475 VTCRVCQAMIDISGKRDQHVVKCVHCNEAT 504 (530)
Q Consensus 475 v~c~vc~~~i~~~~~~~q~vv~c~~c~eat 504 (530)
.+|+.|..+.+.+ .|++|...|
T Consensus 2 rAC~~C~~v~~~~--------~CpnC~~~t 23 (59)
T 3lpe_B 2 RACLKCKYLTNDE--------ICPICHSPT 23 (59)
T ss_dssp EEETTTCBEESSS--------BCTTTCCBE
T ss_pred cccccCCcccCCC--------CCCCCCCCc
Confidence 5899999986544 599998643
Done!