RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8200
(530 letters)
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 200 bits (510), Expect = 9e-60
Identities = 69/103 (66%), Positives = 82/103 (79%)
Query: 349 ELSFMFLLVWYYCTLTIRESILKVNGSRIKGWWRMHHFISTVCSAVLLIWPNSVTWHLFR 408
+ F FLLVWYYCTLTIRESIL VNGSRIKGWW HH+IST S V+L WP+ + LFR
Sbjct: 151 DALFNFLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTALSGVMLTWPDGEMYQLFR 210
Query: 409 PQFMVFNVYISVVQALQFWYQQGVLYRLKALGERHNMDITIEG 451
QF+ F++Y S+VQ LQ +YQ G LYRL+ALGERHNMD+T+EG
Sbjct: 211 NQFLYFSMYQSLVQFLQNYYQSGCLYRLRALGERHNMDLTVEG 253
Score = 134 bits (339), Expect = 2e-35
Identities = 44/65 (67%), Positives = 51/65 (78%)
Query: 2 FLLVWYYCTLTIRESILKVNGSRIKGWWRMHHFISTVCSAVLLIWPNSVTWHLFRPQFMV 61
FLLVWYYCTLTIRESIL VNGSRIKGWW HH+IST S V+L WP+ + LFR QF+
Sbjct: 156 FLLVWYYCTLTIRESILIVNGSRIKGWWVFHHYISTALSGVMLTWPDGEMYQLFRNQFLY 215
Query: 62 FNVYI 66
F++Y
Sbjct: 216 FSMYQ 220
>gnl|CDD|218219 pfam04707, PRELI, PRELI-like family. This family includes a
conserved region found in the PRELI protein and yeast
YLR168C gene MSF1 product. The function of this protein
is unknown, though it is thought to be involved in
intra-mitochondrial protein sorting. This region is also
found in a number of other eukaryotic proteins.
Length = 157
Score = 167 bits (424), Expect = 2e-49
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
Query: 105 VHEAYERRFPTCPLIPLLVGCEVLSDETSEDTSERITERRFKLIVEAPYLIKKIIG-VDF 163
V A+ RR+P P P ++ +VL + +D + TER P +KK+IG D
Sbjct: 3 VTAAFWRRYPN-PYSPHVISVDVL-ERKVDDDGKLHTERLLTKQGRLPRWLKKLIGVADT 60
Query: 164 VYFLQRNELDWRNRTLEIESKNETFSNRVIVLEKCRYFVHPENPDWTCFEQNAELDVKS- 222
VY L+ + +D + RTL +E++N TFS+R+ V E+C Y HPENP+WTCF+Q A + VK
Sbjct: 61 VYVLEVSVVDPKKRTLTLETRNLTFSSRLSVDERCTYTPHPENPNWTCFDQEASISVKGS 120
Query: 223 FFGFENTIEKLAMKQYITNISKGKEILEHHVEVLKGE 259
FFGF + +EK ++K++ N KG+E +E+ ++ L+ E
Sbjct: 121 FFGFSSKVEKWSLKRFSQNAKKGREGMEYVLQELEEE 157
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O =
1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Length = 258
Score = 121 bits (306), Expect = 2e-31
Identities = 42/69 (60%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 454 PIPPDELPPPYQA---SQPGQVPMVTCRVCQAMIDISGKRDQHVVKCVHCNEATPVKNAP 510
P+ ELPPPY G P+V CRVCQ++I + GK QHVVKC CNEATP+KNAP
Sbjct: 44 PVLLSELPPPYSPAQSPDSGSAPVVNCRVCQSLISVEGKEHQHVVKCGVCNEATPIKNAP 103
Query: 511 AGKKYVRCP 519
GKKYVRCP
Sbjct: 104 PGKKYVRCP 112
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 29.6 bits (66), Expect = 5.5
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 160 GVDFVYFLQRNELDWRNRTLEIESKNETFSNRVIVLEKCRYFVHPENPDWTCFEQNAELD 219
G+ Y L +N W+ EI+ + E + I LEK E D F++ E+D
Sbjct: 545 GLKESYELAKN---WKKLIHEIKKELEEENEDSIHLEK-------EIKD--LFDKYLEID 592
Query: 220 VKSFFGFENTIEKLAMKQYITNISKGKEILEHHVEVLK 257
+ + N + KL +K+ I NIS E ++ +++ K
Sbjct: 593 DEII--YINKL-KLELKEKIKNISDKNEYIKKAIDLKK 627
>gnl|CDD|221966 pfam13187, Fer4_9, 4Fe-4S dicluster domain.
Length = 44
Score = 26.1 bits (57), Expect = 5.5
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 12/47 (25%)
Query: 476 TC-RVCQAMIDISGKRDQHVVKCVHCNEATPVKNAPAGKKYVRCPYG 521
C +VC A + + + VVKC+ C V CP G
Sbjct: 7 ACVKVCPAGVIMRDNGGKVVVKCIGCGACVEV-----------CPVG 42
>gnl|CDD|183010 PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase;
Provisional.
Length = 382
Score = 28.8 bits (65), Expect = 6.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 239 ITN--ISKGKEILEHHVEVLKGEGITHV-PQWQPPKNMEICD 277
+TN I G E+L+ H V+ I V P + P +E D
Sbjct: 4 LTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRD 45
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain. Domain commonly
found in eukaryotic signalling proteins. The domain
family possesses multiple functions including the
abilities to bind inositol phosphates, and various
proteins. PH domains have been found to possess
inserted domains (such as in PLC gamma, syntrophins)
and to be inserted within other domains. Mutations in
Brutons tyrosine kinase (Btk) within its PH domain
cause X-linked agammaglobulinaemia (XLA) in patients.
Point mutations cluster into the positively charged end
of the molecule around the predicted binding site for
phosphatidylinositol lipids.
Length = 102
Score = 27.5 bits (61), Expect = 6.9
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 12 TIRESILKVNGSRIKGWWRMHHFISTVCSAVLLIWPNSVTWHLFRPQFMVF 62
I+E L K W+ +F+ + ++ LL + + ++P+ +
Sbjct: 1 VIKEGWLYKKSGGGKKSWKKRYFV--LFNSTLLYYKSKKDKKSYKPKGSID 49
Score = 27.5 bits (61), Expect = 6.9
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 364 TIRESILKVNGSRIKGWWRMHHFISTVCSAVLLIWPNSVTWHLFRPQFMVF 414
I+E L K W+ +F+ + ++ LL + + ++P+ +
Sbjct: 1 VIKEGWLYKKSGGGKKSWKKRYFV--LFNSTLLYYKSKKDKKSYKPKGSID 49
>gnl|CDD|217009 pfam02386, TrkH, Cation transport protein. This family consists of
various cation transport proteins (Trk) and V-type
sodium ATP synthase subunit J or translocating ATPase J
EC:3.6.1.34. These proteins are involved in active
sodium up-take utilising ATP in the process. TrkH a
member of the family from E. coli is a hydrophobic
membrane protein and determines the specificity and
kinetics of cation transport by the TrK system in E.
coli.
Length = 334
Score = 28.8 bits (65), Expect = 8.2
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 350 LSFMFLLVWYYCTLTIRESILKVNGSRIKGWWRMHHFISTVCSAVLLIWPNSVTWHLFRP 409
+ F+ L +W I+ + G + + + H IS + + +S
Sbjct: 27 IGFVALSIWILYVPLYSACIVLLGGMPL--FDAIFHSISAFNNGGFSLTSDS-------- 76
Query: 410 QFMVFN--VYISVVQALQF 426
FN ++ +V +
Sbjct: 77 -IGSFNNNPFVELVTSFLI 94
>gnl|CDD|227558 COG5233, GRH1, Peripheral Golgi membrane protein [Intracellular
trafficking and secretion].
Length = 417
Score = 28.6 bits (63), Expect = 9.0
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 408 RPQFMVFNVYISVVQALQFWYQQGVLYRLKALGERHNMDITIEGQNPIPPDELPPPYQAS 467
R + V+ +V L G L+RL G + G E P +Q
Sbjct: 253 RAKTERDGVHKGIVGILGCQVGHGFLHRLPLAGVGQKPQLQKLGTTK--RTEDPESHQVE 310
Query: 468 QPGQ 471
Q G
Sbjct: 311 QRGV 314
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.442
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,063,113
Number of extensions: 2615304
Number of successful extensions: 2199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2192
Number of HSP's successfully gapped: 22
Length of query: 530
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 429
Effective length of database: 6,457,848
Effective search space: 2770416792
Effective search space used: 2770416792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.5 bits)