RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8200
         (530 letters)



>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1,
           BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 129

 Score = 30.6 bits (69), Expect = 0.17
 Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 32/139 (23%)

Query: 190 NRVIVLEKCRYFVHPENPDWTCFEQNAELDVKSFFGFENTIEKLAMKQY------ITNIS 243
           +++IV+                   +A    K    +E        K Y      + ++ 
Sbjct: 1   DKIIVMGG------KNAL-----VDDAGF--KMLMQYEKHNLSNLQKAYDLNLRDVADLE 47

Query: 244 KGKEILEHHVEVLKG-----EGITHVPQWQPPKNMEICDELNKLDLKTDISVEENHLD-R 297
           +G       VE+ K      +           +     + L+ +++ T+ + E      R
Sbjct: 48  RGFLEKPKQVEMGKKLEKKVKYFNE-------EAERHLETLDGMNIITETTPENQAKRNR 100

Query: 298 MRRQGSMSPSGTSLSLIDK 316
            +R+  ++   T L+  D 
Sbjct: 101 EKRKTLVNGIQTLLNQNDA 119


>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 215

 Score = 29.4 bits (65), Expect = 0.83
 Identities = 16/151 (10%), Positives = 41/151 (27%), Gaps = 10/151 (6%)

Query: 180 EIESKNETFSNRVIVLEKCRYFVHPENPDWTCFEQNAELDVKSFFGFENTIEKLAMKQYI 239
           +     E    R  +     Y     +            D++        I + A+    
Sbjct: 54  DTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAE 113

Query: 240 TNISKGKEILEH---HVEVLKGEGITHVPQWQPPKNMEICDELNKLDLKTDISVEENHLD 296
               K    +      V+ +  + +    Q       ++ ++ + +D      +E   + 
Sbjct: 114 EPPLKPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYH-QLERELMT 172

Query: 297 RMRRQGSMSPSGTSLSLIDKNWTEGADYERV 327
            +            LS + ++      YER+
Sbjct: 173 YVLEDPRNIKRAMHLSFVARH------YERI 197


>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 212

 Score = 28.6 bits (63), Expect = 1.6
 Identities = 16/157 (10%), Positives = 45/157 (28%), Gaps = 10/157 (6%)

Query: 171 ELDWRNRTLEIESKNETFSNRVIVLEKCRYFVHPENPDWTCFEQNAELDVKSFFGFENTI 230
           + D     LE E  +      +I  ++                 + E             
Sbjct: 44  DGDGSIDALEEEVNDFAL--WLIAAQQPVATDLRRIVAAIKIASDIERIADFAVNIAKAC 101

Query: 231 EKLAMKQYITNISKGKEILEHHVEVLKGEGITHVPQWQPPKNMEICDELNKLDLKTDISV 290
            ++  + ++ +I     +     +++    I    +       +I D  +++D +    +
Sbjct: 102 IRIGGQPFVMDIGPLVLMYRLATDMVS-TAIAAYDREDASLAAQIADMDHRVDEQYG-EM 159

Query: 291 EENHLDRMRRQGSMSPSGTSLSLIDKNWTEGADYERV 327
             + L   +   +       L+L+ +        ER 
Sbjct: 160 MASLLAVAKTDAATLAQMNVLALVARY------IERT 190


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 28.0 bits (61), Expect = 3.4
 Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 6/115 (5%)

Query: 11  LTIRESILKVNGSRIKGWWRMHHFISTVCSAVLLIWPNSVTWHLFRPQFMVFNVYIRGLI 70
           +       ++    I        F       VL       T  L    F           
Sbjct: 244 VVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNP 303

Query: 71  PKSLYMSEADWERGTHAMTEDTVYHSVSVSRNHPVHEAYERRFPTCPLIPLLVGC 125
           P+ L         G+H M  D    +  V+ +  V          C  IP   G 
Sbjct: 304 PELLPSL------GSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGA 352


>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 397

 Score = 27.1 bits (58), Expect = 6.5
 Identities = 28/226 (12%), Positives = 71/226 (31%), Gaps = 22/226 (9%)

Query: 125 CEVLSDETSEDTSERITERRFKLIVEAPYLIKKIIGVDFVYFLQRNELDWRNRTLEIESK 184
                ++ +   +E  ++ +  +     ++   ++        +R++L   N    +E K
Sbjct: 141 DTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKK 200

Query: 185 NETFSNRVIVLEKCRYFVHPE----NPDWTCFEQNAELDVKSFFGFENTIEKLAMKQYIT 240
                   + ++  R+F        +          +LDV      E   EK+ ++  + 
Sbjct: 201 ISRLPK-FLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELR 259

Query: 241 NISKGKEILEHHVEVLKGEGITHVPQWQPPKNMEICDELNKLDLKTDISVEENHLDRMRR 300
            + K K   E  ++  K +  +      P +  E    LN+ +    +   + H      
Sbjct: 260 KVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLE 319

Query: 301 QGSMSPSGTSLSLIDKNWTEGADYERVESPILCHDGESIQGSHVTS 346
           +G       +L                   ++ H G + +  H  +
Sbjct: 320 KGENPSCVYNLI-----------------GVITHQGANSESGHYQA 348


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,163,993
Number of extensions: 104834
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 12
Length of query: 530
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,171,896
Effective search space: 515634240
Effective search space used: 515634240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)