Query psy8209
Match_columns 269
No_of_seqs 216 out of 1349
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 21:25:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882|consensus 100.0 5.4E-42 1.2E-46 293.4 20.8 216 10-267 2-217 (237)
2 PF00335 Tetraspannin: Tetrasp 100.0 4.7E-30 1E-34 214.9 2.2 210 16-267 1-210 (221)
3 cd03158 penumbra_like_LEL Tetr 99.8 4.1E-20 8.9E-25 141.6 9.3 119 117-250 1-119 (119)
4 cd03159 TM4SF9_like_LEL Tetras 99.8 4E-20 8.7E-25 142.0 8.6 119 117-250 1-121 (121)
5 cd03167 oculospanin_like_LEL T 99.8 8.6E-20 1.9E-24 139.9 9.2 119 118-250 2-120 (120)
6 cd03163 TM4SF8_like_LEL Tetras 99.8 7.9E-20 1.7E-24 136.8 7.3 104 116-250 1-104 (105)
7 cd03166 CD63_LEL Tetraspanin, 99.8 3.3E-19 7.2E-24 132.0 7.2 99 117-250 1-99 (99)
8 cd03161 TM4SF2_6_like_LEL Tetr 99.8 5.1E-19 1.1E-23 132.1 7.9 104 117-250 1-104 (104)
9 cd03162 peripherin_like_LEL Te 99.8 1.1E-18 2.3E-23 136.3 7.4 119 117-249 1-142 (143)
10 cd03155 CD151_like_LEL Tetrasp 99.8 2.2E-18 4.7E-23 130.1 8.4 105 117-250 1-110 (110)
11 cd03164 CD53_like_LEL Tetraspa 99.8 1.4E-18 3E-23 125.4 6.7 86 117-254 1-86 (86)
12 cd03160 CD37_CD82_like_LEL Tet 99.8 1.6E-18 3.4E-23 132.3 7.3 112 116-250 1-116 (117)
13 cd03154 TM4SF3_like_LEL Tetras 99.8 1.6E-18 3.5E-23 128.6 6.7 99 113-250 1-100 (100)
14 cd03156 uroplakin_I_like_LEL T 99.7 1.8E-18 3.9E-23 131.1 6.5 111 116-249 2-113 (114)
15 cd03165 NET-5_like_LEL Tetrasp 99.7 8.5E-18 1.8E-22 124.1 5.9 96 117-250 1-98 (98)
16 cd03127 tetraspanin_LEL Tetras 99.7 2.5E-16 5.5E-21 113.9 6.7 89 117-249 1-89 (90)
17 cd03157 TM4SF12_like_LEL Tetra 99.6 4.2E-16 9.2E-21 115.8 7.7 89 126-248 11-101 (103)
18 cd03152 CD9_LEL Tetraspanin, e 99.6 1.2E-15 2.7E-20 109.4 5.9 82 117-250 1-84 (84)
19 cd03151 CD81_like_LEL Tetraspa 99.2 9.7E-12 2.1E-16 89.1 5.3 81 117-249 1-83 (84)
20 PF06770 Arif-1: Actin-rearran 92.3 0.75 1.6E-05 37.8 7.4 64 26-91 3-66 (196)
21 KOG4433|consensus 88.8 3.5 7.5E-05 38.5 9.1 46 61-108 207-252 (526)
22 PRK12585 putative monovalent c 82.8 11 0.00025 30.8 8.4 26 21-46 5-30 (197)
23 PF04103 CD20: CD20-like famil 81.9 0.44 9.5E-06 37.1 0.0 73 26-111 4-76 (150)
24 cd07912 Tweety_N N-terminal do 81.9 15 0.00032 34.2 9.9 31 97-127 81-111 (418)
25 PF04156 IncA: IncA protein; 81.8 14 0.0003 30.2 8.9 17 67-83 9-25 (191)
26 PF07086 DUF1352: Protein of u 79.8 32 0.0007 28.2 10.2 83 17-114 37-119 (186)
27 cd07912 Tweety_N N-terminal do 79.6 8.3 0.00018 35.8 7.5 33 75-107 218-250 (418)
28 PF04156 IncA: IncA protein; 78.8 9.4 0.0002 31.1 7.0 54 23-84 6-60 (191)
29 PF14927 Neurensin: Neurensin 76.1 20 0.00042 28.0 7.5 32 10-42 37-68 (140)
30 PF11297 DUF3098: Protein of u 74.9 3.4 7.4E-05 28.0 2.7 23 24-46 6-28 (69)
31 COG4993 Gcd Glucose dehydrogen 74.3 13 0.00029 36.0 7.3 65 21-107 3-67 (773)
32 PF04906 Tweety: Tweety; Inte 71.4 3.7 8E-05 38.0 3.0 33 74-106 194-226 (406)
33 PF05478 Prominin: Prominin; 71.4 36 0.00077 34.6 10.2 35 93-127 137-171 (806)
34 cd03153 PHEMX_like_LEL Tetrasp 70.2 6.4 0.00014 27.7 3.2 20 145-166 30-49 (87)
35 PF05915 DUF872: Eukaryotic pr 68.0 7.5 0.00016 29.3 3.5 49 22-82 44-92 (115)
36 PF03729 DUF308: Short repeat 67.1 33 0.00071 22.5 6.6 47 30-91 1-47 (72)
37 PF07062 Clc-like: Clc-like; 66.6 40 0.00086 28.3 7.9 59 67-127 108-167 (211)
38 PF15345 TMEM51: Transmembrane 66.4 2.3 5E-05 35.8 0.5 19 63-81 58-76 (233)
39 COG3247 HdeD Uncharacterized c 66.3 32 0.00069 28.2 7.1 50 28-92 22-71 (185)
40 KOG4054|consensus 65.6 70 0.0015 25.7 9.1 80 17-112 37-117 (183)
41 KOG4812|consensus 63.0 13 0.00029 31.5 4.4 31 63-93 223-253 (262)
42 PF13903 Claudin_2: PMP-22/EMP 62.1 54 0.0012 25.5 7.8 31 67-97 72-103 (172)
43 PRK11383 hypothetical protein; 59.6 83 0.0018 24.6 8.8 23 21-43 12-34 (145)
44 PF06341 DUF1056: Protein of u 58.7 34 0.00074 22.7 4.8 29 15-43 5-33 (63)
45 PRK10209 acid-resistance membr 57.6 65 0.0014 26.3 7.6 48 27-89 23-70 (190)
46 PF09323 DUF1980: Domain of un 57.0 42 0.00092 27.2 6.4 25 68-92 34-58 (182)
47 PF06195 DUF996: Protein of un 53.5 1E+02 0.0023 23.9 9.9 19 28-46 2-20 (139)
48 PF11023 DUF2614: Protein of u 52.6 96 0.0021 23.2 7.0 36 62-102 11-46 (114)
49 PF11127 DUF2892: Protein of u 52.2 39 0.00084 22.3 4.5 23 66-88 33-55 (66)
50 PRK07946 putative monovalent c 51.8 34 0.00074 27.4 4.8 23 24-46 3-25 (163)
51 PF11381 DUF3185: Protein of u 51.5 9.3 0.0002 25.1 1.3 20 64-83 39-58 (59)
52 cd08762 Cyt_b561_CYBASC3 Verte 49.8 1.4E+02 0.0031 24.3 10.2 24 23-46 72-95 (179)
53 PF14967 FAM70: FAM70 protein 49.7 8.5 0.00018 33.7 1.1 52 26-93 32-84 (327)
54 PF05640 NKAIN: Na,K-Atpase In 46.1 1.3E+02 0.0029 24.9 7.4 40 70-109 37-76 (200)
55 PHA01514 O-antigen conversion 44.8 1.7E+02 0.0036 27.9 8.9 36 67-103 321-356 (485)
56 PHA02898 virion envelope prote 43.9 1.1E+02 0.0024 21.8 5.7 18 29-46 15-33 (92)
57 PF06687 SUR7: SUR7/PalI famil 43.1 1.8E+02 0.004 23.7 8.8 61 67-127 118-182 (212)
58 PRK02935 hypothetical protein; 42.5 1.4E+02 0.003 22.1 7.7 35 62-101 12-46 (110)
59 COG3462 Predicted membrane pro 41.2 1.5E+02 0.0032 22.1 8.5 13 142-154 105-117 (117)
60 KOG3950|consensus 40.8 46 0.001 28.4 4.1 28 92-119 34-61 (292)
61 COG0713 NuoK NADH:ubiquinone o 39.9 1.5E+02 0.0032 21.7 7.4 22 70-93 8-29 (100)
62 PRK11383 hypothetical protein; 39.4 1.3E+02 0.0028 23.6 6.0 37 60-96 10-46 (145)
63 PF13858 DUF4199: Protein of u 38.7 1.9E+02 0.0041 22.5 9.6 30 98-127 67-96 (163)
64 PRK11901 hypothetical protein; 38.6 33 0.00071 30.6 3.1 23 67-89 37-59 (327)
65 PF05767 Pox_A14: Poxvirus vir 37.6 1.2E+02 0.0026 21.7 5.2 18 29-46 15-33 (92)
66 PF10724 DUF2516: Protein of u 37.6 1.6E+02 0.0035 21.5 6.7 28 19-46 3-30 (100)
67 PF13273 DUF4064: Protein of u 37.3 1.5E+02 0.0033 21.1 8.2 20 69-88 58-77 (100)
68 KOG4556|consensus 37.0 1.8E+02 0.0038 23.7 6.6 40 69-108 33-72 (205)
69 COG2245 Predicted membrane pro 36.4 2.3E+02 0.005 22.9 9.9 21 26-46 28-48 (182)
70 PF13706 PepSY_TM_3: PepSY-ass 36.2 59 0.0013 18.9 3.0 23 67-89 10-32 (37)
71 KOG1619|consensus 36.2 2.8E+02 0.006 23.8 9.6 78 14-94 81-160 (245)
72 PF15471 TMEM171: Transmembran 35.7 28 0.0006 30.2 2.1 24 20-43 110-133 (319)
73 PF04123 DUF373: Domain of unk 35.1 2E+02 0.0043 26.1 7.6 24 23-46 178-201 (344)
74 PF05814 DUF843: Baculovirus p 33.6 1.7E+02 0.0037 20.6 5.7 16 93-108 24-39 (83)
75 PRK10209 acid-resistance membr 33.2 1.9E+02 0.0041 23.6 6.7 25 68-92 107-131 (190)
76 PF10176 DUF2370: Protein of u 33.0 58 0.0013 27.7 3.6 32 63-94 194-225 (233)
77 TIGR00941 2a6301s03 Multicompo 32.7 1.2E+02 0.0025 22.4 4.8 22 25-46 2-23 (104)
78 TIGR02916 PEP_his_kin putative 32.1 5.1E+02 0.011 25.6 10.7 26 65-90 231-256 (679)
79 PF12650 DUF3784: Domain of un 31.6 1.9E+02 0.0042 20.5 8.1 15 67-81 48-62 (97)
80 PF15125 TMEM238: TMEM238 prot 31.0 1.7E+02 0.0036 19.6 5.5 46 21-85 6-51 (65)
81 PRK12586 putative monovalent c 30.9 2.6E+02 0.0057 21.9 10.0 27 20-46 7-33 (145)
82 PF11677 DUF3273: Protein of u 30.4 2.8E+02 0.0061 24.1 7.3 19 107-125 220-238 (265)
83 PHA02680 ORF090 IMV phosphoryl 30.3 1.3E+02 0.0029 21.4 4.4 18 29-46 15-33 (91)
84 PF10958 DUF2759: Protein of u 30.1 1.5E+02 0.0033 18.9 5.8 39 76-114 5-43 (52)
85 PRK12438 hypothetical protein; 29.5 6.9E+02 0.015 26.3 11.1 26 17-42 16-41 (991)
86 PF05915 DUF872: Eukaryotic pr 28.8 1.3E+02 0.0029 22.5 4.6 23 65-87 46-68 (115)
87 PRK08389 putative monovalent c 28.6 2.5E+02 0.0054 20.9 7.4 48 27-85 4-51 (114)
88 PRK08600 putative monovalent c 27.5 1.5E+02 0.0032 22.2 4.6 21 26-46 3-23 (113)
89 PF13179 DUF4006: Family of un 27.2 91 0.002 21.0 3.0 20 68-87 16-35 (66)
90 COG4214 XylH ABC-type xylose t 26.8 3.2E+02 0.0069 25.0 7.3 84 6-93 5-101 (394)
91 PF15048 OSTbeta: Organic solu 26.6 87 0.0019 23.9 3.2 27 17-43 35-61 (125)
92 cd08762 Cyt_b561_CYBASC3 Verte 26.5 3.6E+02 0.0077 22.0 7.4 27 95-121 71-97 (179)
93 PF08507 COPI_assoc: COPI asso 25.8 2.5E+02 0.0053 21.5 5.8 37 69-105 10-46 (136)
94 PF09788 Tmemb_55A: Transmembr 25.8 99 0.0022 26.6 3.8 51 26-82 199-249 (256)
95 PF05478 Prominin: Prominin; 25.2 2.5E+02 0.0055 28.6 7.2 10 77-86 431-441 (806)
96 PF07214 DUF1418: Protein of u 25.1 1.7E+02 0.0036 21.3 4.3 47 28-81 14-60 (96)
97 PF07331 TctB: Tripartite tric 25.1 3E+02 0.0065 20.7 6.5 17 67-83 43-59 (141)
98 PF07423 DUF1510: Protein of u 24.6 75 0.0016 26.8 2.9 25 22-46 14-38 (217)
99 PRK12585 putative monovalent c 24.5 4.1E+02 0.0088 22.0 9.6 56 25-85 2-59 (197)
100 PRK12587 putative monovalent c 24.5 3.1E+02 0.0068 20.7 8.9 30 17-46 2-31 (118)
101 PF04790 Sarcoglycan_1: Sarcog 24.5 97 0.0021 26.9 3.6 33 86-118 5-37 (264)
102 PF04854 DUF624: Protein of un 24.0 74 0.0016 21.5 2.4 18 22-39 2-22 (77)
103 PF10669 Phage_Gp23: Protein g 24.0 2.9E+02 0.0063 20.1 7.0 32 96-127 17-48 (121)
104 PRK12658 putative monovalent c 24.0 1.4E+02 0.0031 22.8 4.0 22 25-46 2-23 (125)
105 PRK01741 cell division protein 23.6 43 0.00094 30.0 1.3 20 24-43 3-26 (332)
106 PRK09094 putative monovalent c 23.3 1.9E+02 0.0041 21.7 4.5 21 26-46 3-23 (114)
107 COG1422 Predicted membrane pro 23.0 3.4E+02 0.0073 22.6 6.2 6 83-88 28-33 (201)
108 cd08765 Cyt_b561_CYBRD1 Verteb 23.0 3.9E+02 0.0084 21.2 9.6 20 24-43 50-69 (153)
109 KOG2189|consensus 22.5 1.4E+02 0.003 30.1 4.5 75 3-82 389-468 (829)
110 PF09680 Tiny_TM_bacill: Prote 22.4 90 0.002 16.5 1.8 11 102-112 9-19 (24)
111 PF11947 DUF3464: Protein of u 22.3 1.4E+02 0.003 23.7 3.8 52 17-83 62-113 (153)
112 PF13127 DUF3955: Protein of u 22.1 2.5E+02 0.0053 18.6 5.5 17 23-39 5-21 (63)
113 PF06749 DUF1218: Protein of u 22.0 1.9E+02 0.0042 20.8 4.3 33 11-43 30-62 (97)
114 COG5487 Small integral membran 21.1 2.3E+02 0.0051 17.9 5.0 21 69-89 8-28 (54)
115 PF14276 DUF4363: Domain of un 20.4 3.4E+02 0.0073 20.1 5.6 18 110-127 11-28 (121)
116 PF05360 YiaAB: yiaA/B two hel 20.2 2.4E+02 0.0053 17.8 5.1 27 66-92 5-31 (53)
117 COG3846 TrbL Type IV secretory 20.0 7.2E+02 0.016 23.4 8.4 21 90-110 252-272 (452)
No 1
>KOG3882|consensus
Probab=100.00 E-value=5.4e-42 Score=293.41 Aligned_cols=216 Identities=39% Similarity=0.769 Sum_probs=185.3
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8209 10 FTYVSPCVKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALR 89 (269)
Q Consensus 10 ~~~~~~~~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~ 89 (269)
+.++.+|+|++++++|+++++.|++++++|+|++.+. ..+.++.+ .+ +..++++++++|++++++|++||+||.|
T Consensus 2 ~~~~~~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~---~~~~~~~~-~~-~~~~~~ili~~G~v~~~v~flGc~Ga~~ 76 (237)
T KOG3882|consen 2 MSCGSSCLKYLLFLLNLLFWLLGLLLLAVGIWLLADK---GFLSSLLE-SD-FLVPAYILIAVGGVVFLVGFLGCCGALR 76 (237)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhhhheeEec---cchhhccc-cc-hhcchhhhhhhhHHHHHHHHhhhhhhHh
Confidence 5678899999999999999999999999999999988 44444331 11 4668889999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCC
Q psy8209 90 ENTCLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDW 169 (269)
Q Consensus 90 ~~~~lL~~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw 169 (269)
||||+|.+|++++++++++|++++++++++++++++.+++++.++.++.|+++++.+++||.+|++++|||++ ||+||
T Consensus 77 es~~lL~~y~~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~--~~~~~ 154 (237)
T KOG3882|consen 77 ESRCLLLSYFILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVN--GYSDY 154 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCC--CchHH
Confidence 9999999999999999999999999999999999999965788899999998888888999999999999999 99998
Q ss_pred cccccCCCCCCCCCCCcccccCccccccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHh
Q psy8209 170 SKNEYFNCSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERN 249 (269)
Q Consensus 170 ~~~~~~~~~~~~~~~~~vP~SCC~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~ 249 (269)
.+.. ...+|+|||....+ +.+. ...+..+|++||.+++.++++++
T Consensus 155 ~~~~----------~~~vP~SCC~~~~~-------~~~~------------------~~~~~~~~~~GC~~~~~~~~~~~ 199 (237)
T KOG3882|consen 155 FNCS----------SNNVPPSCCKRTRR-------QKFP------------------QDVPDNIYTEGCLEKLSSWLESN 199 (237)
T ss_pred hcCC----------CCCCCcccCCCccc-------cccc------------------ccchhhhhccccHHHHHHHHHHh
Confidence 7531 00199999984110 1111 12336789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy8209 250 LYTIAGVALGVALSQVRY 267 (269)
Q Consensus 250 ~~~v~~~~~~i~~~qi~~ 267 (269)
+.++++++++++++|++.
T Consensus 200 ~~~i~~~~~~i~~~~~~~ 217 (237)
T KOG3882|consen 200 LLIIGGVGLGIAVLELLG 217 (237)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.96 E-value=4.7e-30 Score=214.91 Aligned_cols=210 Identities=30% Similarity=0.654 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy8209 16 CVKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALRENTCLL 95 (269)
Q Consensus 16 ~~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL 95 (269)
|+|++++++|++++++|++++++|+|++... ....... .+......++++.+|+++++++++|++|+.++||+++
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~---~~~~~~~--~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l 75 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNN---QYLSEFS--SSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLL 75 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 7899999999999999999999999994222 1111111 1223445667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccC
Q psy8209 96 KFYSLCLLIFFLLEMLVAVIGFVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYF 175 (269)
Q Consensus 96 ~~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~ 175 (269)
.+|.++++++++++++++++++.+++++++..++.......+.+..++..++.||.+|++++|||++ +++||....|.
T Consensus 76 ~~y~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~--~~~d~~~~~~~ 153 (221)
T PF00335_consen 76 IIYIILLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVN--SPDDWFTSKWS 153 (221)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SST--TCHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCC--CCccccccccc
Confidence 9999999999999999999999999998887744432233445556677889999999999999999 99999876543
Q ss_pred CCCCCCCCCCcccccCccccccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhHHHHHH
Q psy8209 176 NCSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNLYTIAG 255 (269)
Q Consensus 176 ~~~~~~~~~~~vP~SCC~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~~~v~~ 255 (269)
..+ .|++|... .. + . ...+....|.+||.+++.++++++...+++
T Consensus 154 ~~~--------~~~~~~~~-~~---------~-~----------------~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~ 198 (221)
T PF00335_consen 154 SCS--------SPDSCPDC-QC---------P-D----------------DCSSENSIYTRGCYDKLREYLRSYLKYIGI 198 (221)
T ss_dssp T-----------------T-CS-----------T----------------TCCCCHCCTST-HHHHHHHHHCT-------
T ss_pred ccc--------cccccccc-cc---------c-c----------------cccccccccCCChHHHHHHHHHHHHHHHHH
Confidence 321 11111100 00 0 0 012235678999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q psy8209 256 VALGVALSQVRY 267 (269)
Q Consensus 256 ~~~~i~~~qi~~ 267 (269)
++++++++|++.
T Consensus 199 ~~~~~~~l~~~~ 210 (221)
T PF00335_consen 199 VSLAILVLQLIG 210 (221)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 3
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=99.82 E-value=4.1e-20 Score=141.56 Aligned_cols=119 Identities=56% Similarity=1.068 Sum_probs=82.7
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINAT 196 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~ 196 (269)
|++++++++.+++.+. +.++.|..+...+.+||.+|.+|+|||++ +|+||.++.|++.+++..+...||.|||....
T Consensus 1 ~v~r~~v~~~i~~~l~-~~i~~y~~~~~~~~~~d~lQ~~l~CCG~~--~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~ 77 (119)
T cd03158 1 FIFSNQTIDLLEENIR-KAIVHYYDDLDLQNIIDFVQKEFKCCGGD--DYRDWSKNMYFNCSSPNPEACGVPYSCCIRAK 77 (119)
T ss_pred CCcHHHHHHHHHHHHH-HHHHHHccCHHHHHHHHHHHHHccCCCCC--ChhhcccccccccCCCCCcCCCcCcCcccCCC
Confidence 4688999999866555 66677776667889999999999999999 99999988777543222223469999997432
Q ss_pred cCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 197 DITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 197 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
.+ ......|+....... .......+|.+||.+++.+|+++|+
T Consensus 78 ~~--~~~~~~C~~~~~~~~----------~~~~~~~i~~~GC~~~i~~~~~~n~ 119 (119)
T cd03158 78 DQ--EVINTMCGYGVQNLE----------RLEASKLIYTRGCIDAVVLWIEDNL 119 (119)
T ss_pred Cc--cccccCcCCCccccc----------chhhcCcccccchHHHHHHHHHhhC
Confidence 11 011245754321100 0122357899999999999999874
No 4
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=99.82 E-value=4e-20 Score=142.03 Aligned_cols=119 Identities=46% Similarity=0.955 Sum_probs=82.0
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCC--CCCCCCCcccccCccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCS--SPSVEKCGVPFSCCIN 194 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~--~~~~~~~~vP~SCC~~ 194 (269)
|++++++++.+++.+. +.++.|..+++.+++||.+|++|+|||++ +|+||..+.|++.. ++..+...||.|||..
T Consensus 1 ~v~r~~v~~~i~~~l~-~~i~~y~~~~~~~~~~D~iQ~~l~CCG~~--~~~DW~~~~~~~~~~~~~~~~~~~vP~SCC~~ 77 (121)
T cd03159 1 FVFKDWIKDQLTEFLN-NNIRAYRDDIDLQNLIDFLQEYWQCCGAR--GPDDWNLNIYFNCTDSNPSRERCGVPFSCCVK 77 (121)
T ss_pred CccHHHHHHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhccCCCCC--ChHHhcccccccccCCCCCCCCCCCCcccccC
Confidence 4788999999966555 66777877777889999999999999999 99999877777532 1222234699999973
Q ss_pred cccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 195 ATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 195 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
.. .....+..|+......+ .......+|.+||.+++.+|+++|+
T Consensus 78 ~~--~~~~~~~~C~~~~~~~~----------~~~~~~~i~~~GC~~~l~~~~~~n~ 121 (121)
T cd03159 78 DP--AEDVVNTQCGYDVRKKP----------ELELQHHIHTKGCVQAFEKWLQDNL 121 (121)
T ss_pred Cc--ccccccCccCccccccc----------cccccCCchHhhCHHHHHHHHHhcC
Confidence 21 10111345754221000 0012356899999999999999873
No 5
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=99.81 E-value=8.6e-20 Score=139.95 Aligned_cols=119 Identities=42% Similarity=0.778 Sum_probs=81.8
Q ss_pred hchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCcccccc
Q psy8209 118 VFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINATD 197 (269)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~~ 197 (269)
++++++++.+++.+. +.++.|..+++.+.+||.+|++|+|||++ +|+||..+.|++.+.++.+...||.|||.....
T Consensus 2 ~~r~~v~~~i~~~l~-~~i~~y~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~~ 78 (120)
T cd03167 2 ALWGPLQDGLEHTLR-LAIAHYQDDPDLRFLIDQVQLGLQCCGAS--SYQDWQQNLYFNCSSPGVQACSLPASCCIDPRE 78 (120)
T ss_pred ccHHHHHHHHHHHHH-HHHHHhcCChhHHHHHHHHHHhccCCCCC--ChHHhcccccccCCCCCCCCCCCCcCccCCCcc
Confidence 478888888855554 66677876667788999999999999999 999998777776443444455799999973211
Q ss_pred CCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 198 ITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 198 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
.. ...+..|+....... .......+|.+||.+++.+++++|+
T Consensus 79 ~~-~~~~~~C~~~~~~~~----------~~~~~~~iy~~GC~~~l~~~~~~n~ 120 (120)
T cd03167 79 DG-AVVNDQCGFGALGLD----------EDAAQRVVHLGGCGPPLRRWLRGNL 120 (120)
T ss_pred cc-ccccCCCCCCccccc----------cchhcccchhccCHHHHHHHHHhcC
Confidence 00 011246764321100 0012256899999999999999874
No 6
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=99.80 E-value=7.9e-20 Score=136.83 Aligned_cols=104 Identities=25% Similarity=0.629 Sum_probs=78.2
Q ss_pred HhhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCcccc
Q psy8209 116 GFVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINA 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~ 195 (269)
+|++++++++.+++.+ ++.++.|+.++..+.+||.+|++|+|||++ +|+||.++.|++.++ ...||.|||...
T Consensus 1 ~~v~~~~v~~~~~~~~-~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~~~~----~~~vP~SCC~~~ 73 (105)
T cd03163 1 GYVYRAKVEDELNPSI-DKVFNKYNGTNAESRAVDYLQRQLQCCGIH--NYTDWENTPWFKESK----NNSVPLSCCKET 73 (105)
T ss_pred CcccHHHHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHhCcccCCC--CHHHHhhchhhhcCC----CCccCcCccCCC
Confidence 3678999999985555 467777876667789999999999999999 999998776654321 235999999732
Q ss_pred ccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 196 TDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 196 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
...|+... .....+|.+||.+++.+++++++
T Consensus 74 --------~~~C~~~~----------------~~~~~i~~~GC~~~~~~~~~~~~ 104 (105)
T cd03163 74 --------FTSCTGSL----------------TQPKDLYQEGCEAKLVKKLQEVM 104 (105)
T ss_pred --------CCCcccCC----------------CCCCchhhhccHHHHHHHHHHHh
Confidence 23464311 12246899999999999999885
No 7
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=99.78 E-value=3.3e-19 Score=132.01 Aligned_cols=99 Identities=29% Similarity=0.743 Sum_probs=74.4
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINAT 196 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~ 196 (269)
|++++++++.+++.+. +.++.|..+.+.+++||.+|++|+|||++ +|+||.++.+.. ...||.|||.+.
T Consensus 1 ~v~r~~v~~~i~~~l~-~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~-------~~~vP~SCC~~~- 69 (99)
T cd03166 1 YVFRDKVMSEFNDSFN-QMISNYNKTNDFRKILDRMQKDLKCCGAN--NYTDWENIPSLD-------TDSVPDSCCINV- 69 (99)
T ss_pred CCchHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHhcccCCC--ChhhhhcccCCC-------CCCCCcCccCcC-
Confidence 4688999998855554 66777877667888999999999999999 999997643211 235999999732
Q ss_pred cCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 197 DITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 197 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
...|+... ....+|.+||.+++.+++++++
T Consensus 70 -------~~~C~~~~-----------------~~~~~y~~GC~~~~~~~~~~~~ 99 (99)
T cd03166 70 -------TKGCGINF-----------------DEKVIHLEGCVTKIEGWLKKNI 99 (99)
T ss_pred -------CCCcccCC-----------------CccchHHhcCHHHHHHHHHHhC
Confidence 23575311 1246899999999999999873
No 8
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=99.78 E-value=5.1e-19 Score=132.10 Aligned_cols=104 Identities=31% Similarity=0.750 Sum_probs=76.1
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINAT 196 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~ 196 (269)
|++++++++.+++.+ ++.++.|.++++.+.+||.+|++|+|||++ +|+||.++.|++ ...||.|||.+.
T Consensus 1 ~v~r~~i~~~l~~~l-~~~i~~y~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~-------~~~vP~SCC~~~- 69 (104)
T cd03161 1 FVFRHEIKGTFLRTY-NEAVSNYNGDDERSDAVDTVQRTLHCCGVE--NYTDWLNSPYFL-------EKGIPLSCCKNR- 69 (104)
T ss_pred CCchHHHHHHHHHHH-HHHHHHhcCChhHHHHHHHHHhcCcCcCCC--Chhhhhcccccc-------CCCcCcccccCC-
Confidence 468899998885555 467778887777788999999999999999 999998766653 125999999731
Q ss_pred cCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 197 DITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 197 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
..|+...... .......+|.+||.+++.+++++++
T Consensus 70 --------~~C~~~~~~~-----------~~~~~~~i~~~GC~~~~~~~~~~n~ 104 (104)
T cd03161 70 --------SDCSPQDLKN-----------LTKAATKVYQQGCFTLVTSFMEANM 104 (104)
T ss_pred --------CCCCcccccc-----------ccccccccchhccHHHHHHHHHHhC
Confidence 2464321100 0012256899999999999999873
No 9
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=99.76 E-value=1.1e-18 Score=136.33 Aligned_cols=119 Identities=29% Similarity=0.611 Sum_probs=80.7
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCCh-----hHHHHHHHHhhcCccccccCCCCCCCcccccC-----CCCCCCC----
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDA-----DLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYF-----NCSSPSV---- 182 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~-----~~~~~~~---- 182 (269)
|++++++++.+++.+ ++.++.|++++ +.+++||.+|++|+|||++ +|+||.++.|+ +++++..
T Consensus 1 fv~rd~l~~~L~~~L-~~~i~~Y~~~~~~~~~~~~~~~D~lQ~~fkCCG~~--~y~DW~~~~w~~n~y~~~~~~~~~~~~ 77 (143)
T cd03162 1 FIMRGSLEESLKTGL-KNAMKFYKDTDTPGRCFLKKTIDMLQIEFQCCGNN--GYRDWFEIQWISNRYLDFSSKEVKDRI 77 (143)
T ss_pred CCcHHHHHHHHHHHH-HHHHHHhcCCcccchhhHHHHHHHHHHhccCCCCC--ChhhhhhhhhhcccccCCCccchhhhh
Confidence 468899999885555 46677787653 5789999999999999999 99999865554 4433322
Q ss_pred --------CCCcccccCccccccCCCcccccccCCCcccCC-cccccCCCccccccCCceeccccHHHHHHHHHHh
Q psy8209 183 --------EKCGVPFSCCINATDITSGLVNIMCGYGAQQSS-GVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERN 249 (269)
Q Consensus 183 --------~~~~vP~SCC~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~ 249 (269)
+...||.|||.... ...|........ -+..|... +....+|++||.+++.+|+.+.
T Consensus 78 ~~~~~~~~~~~~vP~SCc~~~~-------~~~C~~~~~~~~~a~~~~~~~----~~~~~i~~~GC~~~l~~~~~~~ 142 (143)
T cd03162 78 KSNVDGRYLTDGVPFSCCNPSS-------PRPCIQHQITDNSAHYNYDYQ----TEELNLWTRGCREALLEYYTSK 142 (143)
T ss_pred hcccccccccCCcCCcccCCCC-------CCchhhhcccccccccccccC----cccccchHHHHHHHHHHHHHhc
Confidence 34579999998432 135643211100 01122222 2346899999999999999764
No 10
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=99.76 E-value=2.2e-18 Score=130.08 Aligned_cols=105 Identities=28% Similarity=0.608 Sum_probs=74.2
Q ss_pred hhchhhHHHHHHHHHHHHHHhH-hCCC--hhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCcc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHM-YRDD--ADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCI 193 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-y~~~--~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~ 193 (269)
|++++++++.+++.+. +.++. |+.+ ++.+.+||.+|++|+|||++ +|+||.++.|++.. ......||.|||.
T Consensus 1 ~v~~~~~~~~i~~~l~-~~i~~~y~~~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~~~--~~~~~~vP~SCC~ 75 (110)
T cd03155 1 YTYYQQLEDELKESLK-RTMQENYGQSGEEALTLTVDELQQEFKCCGSN--NYTDWQDSEWINSN--EANGRLVPDSCCK 75 (110)
T ss_pred CccHHHHHHHHHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhCcCcCCC--ChhhhhhccccccC--CCCCCCCCccccC
Confidence 4688999998866655 44444 6544 56788999999999999999 99999887766421 1113369999997
Q ss_pred ccccCCCcccccccCCCcccCCcccccCCCccccccCCceec--cccHHHHHHHHHHhH
Q psy8209 194 NATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWT--SGCIEVMRLWAERNL 250 (269)
Q Consensus 194 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~GC~~~l~~~l~~~~ 250 (269)
+. ...|+... .....+|. +||.+++.+++++++
T Consensus 76 ~~--------~~~c~~~~----------------~~~~~~~~~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 76 TV--------VDRCGCLR----------------DHPSNIYKVEGGCIPKLEDFLYDHL 110 (110)
T ss_pred CC--------CCCccccc----------------CChhccccccCChHHHHHHHHHHhC
Confidence 42 12353100 11244677 999999999999873
No 11
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=99.76 E-value=1.4e-18 Score=125.40 Aligned_cols=86 Identities=29% Similarity=0.716 Sum_probs=69.7
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINAT 196 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~ 196 (269)
|++++++++.+++.+ ++.+++|.+++..+.+||.+|++|+|||++ +|+||.+ .+|+|||.+.
T Consensus 1 ~v~~~~v~~~i~~~~-~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~--------------~vP~SCC~~~- 62 (86)
T cd03164 1 FVYEKKLNNYVKEGL-TDSLEQYHKDNNTSEAWDMIQSNLQCCGIN--GTTDWGS--------------GVPSSCCSSD- 62 (86)
T ss_pred CCchHHHHHHHHHHH-HHHHHHhcCCccHHHHHHHHHHHhcCCCCC--ChhhhCC--------------CCChhhcCCC-
Confidence 468889988885544 467777876555688999999999999999 9999952 3899999621
Q ss_pred cCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhHHHHH
Q psy8209 197 DITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNLYTIA 254 (269)
Q Consensus 197 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~~~v~ 254 (269)
..+|.+||.+++.+++++++.+++
T Consensus 63 ----------------------------------~~~~~~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 63 ----------------------------------TEYKVEGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred ----------------------------------CccccccHHHHHHHHHHHHHHHhC
Confidence 136889999999999999998763
No 12
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=99.76 E-value=1.6e-18 Score=132.35 Aligned_cols=112 Identities=24% Similarity=0.521 Sum_probs=76.9
Q ss_pred HhhchhhHHHHHHHHHHHHHHhHhCC---ChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCc
Q psy8209 116 GFVFPHHIQATLEESFTEKIIHMYRD---DADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCC 192 (269)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC 192 (269)
+|++++++++.+++.+. +.++.|.. +++.+++||.+|++|+|||++ +|+||.++.|+... ....||.|||
T Consensus 1 ~~v~r~~v~~~i~~~l~-~~i~~y~~~~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~~~----~~~~vP~SCC 73 (117)
T cd03160 1 IYFQRDKLKQEMGDIVE-KVIQNYGGNPENKTAEEAWDYVQFQLQCCGWT--GPQDWTDNSLIKNS----SEPLYPCSCC 73 (117)
T ss_pred CceeHHHHHHHHHHHHH-HHHHhcCCCCCCchHHHHHHHHHhhCcccCCC--CchhHHhchhccCC----CCCCCCHhhh
Confidence 36789999999865554 66777764 346788999999999999999 99999876655321 1235999999
Q ss_pred cccccCC-CcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 193 INATDIT-SGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 193 ~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
.+..... ..+....|+... .....+|++||.+++.+|+++++
T Consensus 74 ~~~~~~~~~~~~~~~C~~~~----------------~~~~~iy~~GC~~~l~~~~~~n~ 116 (117)
T cd03160 74 NSSATADSPRPSKGFCEAPA----------------SLDWPVYQEGCMEKLQSWLNENL 116 (117)
T ss_pred cCCccccccCCCCcccCCCC----------------ccccchHHHhhHHHHHHHHHHhc
Confidence 7321100 001123464211 01245799999999999999885
No 13
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=99.75 E-value=1.6e-18 Score=128.57 Aligned_cols=99 Identities=24% Similarity=0.434 Sum_probs=72.1
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHhHhCCC-hhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccC
Q psy8209 113 AVIGFVFPHHIQATLEESFTEKIIHMYRDD-ADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSC 191 (269)
Q Consensus 113 ~i~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SC 191 (269)
||++|++++++++.+++.+ ++.++.|+.+ .+.+++||.+|++|+|||++ ++.||... .||.||
T Consensus 1 gi~~~v~r~~i~~~i~~~~-~~~i~~y~~~~~~~~~~~d~lQ~~l~CCG~~--~~~d~~~~-------------~vP~SC 64 (100)
T cd03154 1 GIVGAVYKPKIENELKEKN-TKLLSLLGQNAKSVKKSLEKFQKELKCCGLV--NGADDWGN-------------DIPASC 64 (100)
T ss_pred CEEEEEeHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHcCCCCCCC--CchhhccC-------------CCCCCC
Confidence 4678999999999995555 4677777655 45788999999999999999 98887431 499999
Q ss_pred ccccccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 192 CINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 192 C~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
|+... ..|..... .....+|++||.+++.+++++++
T Consensus 65 cc~~~--------~~c~~~~~---------------~~~~~~~~~GC~~~i~~~~~~~~ 100 (100)
T cd03154 65 NCTTT--------QSDCVVAY---------------YGGSNVYKEPCISKIKDFLKKNL 100 (100)
T ss_pred cCCCC--------CCCccccc---------------CCCcCccccccHHHHHHHHHhhC
Confidence 64211 12321000 11246799999999999999873
No 14
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=99.75 E-value=1.8e-18 Score=131.11 Aligned_cols=111 Identities=17% Similarity=0.306 Sum_probs=76.3
Q ss_pred HhhchhhHHHHHHHHHHHHHHhHhCCC-hhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccc
Q psy8209 116 GFVFPHHIQATLEESFTEKIIHMYRDD-ADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCIN 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~ 194 (269)
++++++++++.+++.+. +.++.|..+ ++.+.+||.+|++|+|||++ +|+||.++.|+... .......||.|||..
T Consensus 2 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~~~~~~~-~~~~~~~vP~SCC~~ 77 (114)
T cd03156 2 ALFFKKDLEDSFKNLLK-NNYGNYNSTGDAITSTWNRVMIELKCCGVN--GPTDFVDSTSFFRQ-KNEPNSPYPESCCKR 77 (114)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHhccccchHHHHHHHHHHhcccCcCCC--CcHHHHhhhHHhcc-CCCCCCcCCHHHcCc
Confidence 57889999998855554 666666543 56789999999999999999 99999887775421 111234699999973
Q ss_pred cccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHh
Q psy8209 195 ATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERN 249 (269)
Q Consensus 195 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~ 249 (269)
.. .... ...|... ......+|++||.+++.++++++
T Consensus 78 ~~--~~~~-~~~~~~~----------------~~~~~~~~~~GC~~~l~~~~~~~ 113 (114)
T cd03156 78 NS--NSQI-VDLDCPK----------------LGSPNSYNKKGCYEKLSNPIERY 113 (114)
T ss_pred cc--cccc-ccccCCC----------------CCcchhhhhcCchHHHHHHHHhc
Confidence 21 0000 1122210 01235689999999999999876
No 15
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=99.72 E-value=8.5e-18 Score=124.14 Aligned_cols=96 Identities=32% Similarity=0.739 Sum_probs=70.7
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCC--hhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDD--ADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCIN 194 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~ 194 (269)
|++++++++.+++.+ ++.++.|..+ +..+++||.+|++|+|||++ +|+||.++. . ...||.|||..
T Consensus 1 ~v~r~~~~~~i~~~l-~~~~~~y~~~~~~~~~~~~d~~Q~~l~CCG~~--~~~Dw~~~~--~-------~~~vP~SCC~~ 68 (98)
T cd03165 1 FVFREKVDLTAKDDL-KEGLELYGTRNNRGLTNAWDITQTEFRCCGVT--NYTDWYEVL--G-------ENRVPDSCCQE 68 (98)
T ss_pred CChHHHHHHHHHHHH-HHHHHHhCCCCcHHHHHHHHHHHHhCcCcCCC--ChhHHHHhc--C-------CCCCCHhhcCC
Confidence 467889988885554 4677778653 35788999999999999999 999997531 1 12599999963
Q ss_pred cccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 195 ATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 195 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
. ...|+.. ....+|.+||.+++.+++++++
T Consensus 69 ~--------~~~C~~~------------------~~~~~~~~GC~~~~~~~~~~~~ 98 (98)
T cd03165 69 D--------SQDCGRN------------------PTELWWKTGCYEKVQQWLVDNL 98 (98)
T ss_pred C--------ccccccC------------------CccchHHhhhHHHHHHHHHhcC
Confidence 2 2357431 1145799999999999998863
No 16
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=99.65 E-value=2.5e-16 Score=113.93 Aligned_cols=89 Identities=29% Similarity=0.614 Sum_probs=67.6
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINAT 196 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~ 196 (269)
+++++++.+.+.+ .+++.+++|..++..+.+||.+|.+|+|||++ ||.||... ...+|.|||....
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~iq~~l~CCG~~--~~~D~~~~-----------~~~vP~SCc~~~~ 66 (90)
T cd03127 1 FVYRDQLESLVSD-TLNDAWDEYYVDDDFQEAMDALQSTFECCGVN--GPTDYLDL-----------RLLVPSSCCKGTD 66 (90)
T ss_pred CCcHHHHHHHHHH-HHHHHHHHhcCCchHHHHHHHHHHhCcCcCCC--ChHHHccC-----------CCCCCHhhcCCCC
Confidence 3578888888844 44577777776566788999999999999999 99999751 1259999997321
Q ss_pred cCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHh
Q psy8209 197 DITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERN 249 (269)
Q Consensus 197 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~ 249 (269)
..|. ..+|.+||.+++.++++++
T Consensus 67 --------~~~~----------------------~~~~~~GC~~~~~~~~~~~ 89 (90)
T cd03127 67 --------GNCG----------------------LNLYTEGCLEKLVDFLRSN 89 (90)
T ss_pred --------CCCc----------------------cchhhHccHHHHHHHHHhh
Confidence 1121 3578999999999999876
No 17
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=99.65 E-value=4.2e-16 Score=115.80 Aligned_cols=89 Identities=21% Similarity=0.347 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhHhCCC-hh-HHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccccccCCCccc
Q psy8209 126 TLEESFTEKIIHMYRDD-AD-LQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINATDITSGLV 203 (269)
Q Consensus 126 ~~~~~~~~~~~~~y~~~-~~-~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~~~~~~~~~~ 203 (269)
.++..+. +.++.|+.+ .+ .+++||.+|++|+|||++ +|+||.++.. ...||.|||.+.
T Consensus 11 ~~~~~l~-~~~~~Y~~~~~~~~~~~~D~iQ~~l~CCG~~--~~~DW~~~~~---------~~~vP~SCC~~~-------- 70 (103)
T cd03157 11 SDMISLK-SRMSNFGLQRYQWLTHAWNSFQTEFKCCGVI--YFTDWLEMTE---------MEWPPDSCCSNQ-------- 70 (103)
T ss_pred HHHHHHH-HHHHHHCCCCchhHHHHHHHHHHhccCccCC--ChhHHhccCC---------CCCCCccccCCC--------
Confidence 4434443 566778763 22 688999999999999999 9999975421 124999999732
Q ss_pred ccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHH
Q psy8209 204 NIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAER 248 (269)
Q Consensus 204 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~ 248 (269)
...|+.... ......+|++||.+++.++++.
T Consensus 71 ~~~C~~~~~--------------~~~~~~iy~~GC~~~i~~~l~~ 101 (103)
T cd03157 71 YPGCARQAH--------------YNDLSDLYQEGCGPKIYSFIRG 101 (103)
T ss_pred CCCcCcCCC--------------CcccccccccchHHHHHHHHHh
Confidence 234753211 0112468999999999999975
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=99.60 E-value=1.2e-15 Score=109.43 Aligned_cols=82 Identities=16% Similarity=0.343 Sum_probs=63.2
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCC--hhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDD--ADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCIN 194 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~ 194 (269)
|++++++++.+ ++.+++.++.|.++ +..+.+||.+|++|+|||++ +|.||. ||.||++.
T Consensus 1 ~v~r~~v~~~i-~~~~~~~~~~y~~~~~~~~~~~~d~iQ~~l~CCG~~--~~~D~~----------------vP~SC~~~ 61 (84)
T cd03152 1 FSNKDKVVKEV-QTFYRQTYAKYKQSRDPPLKETLKAIHFALDCCGPT--GGLEQF----------------VTDTCPKK 61 (84)
T ss_pred CccHHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCCC--CCcccc----------------cCCCCCCC
Confidence 46889999888 44455777788763 35567999999999999999 999992 89998531
Q ss_pred cccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHhH
Q psy8209 195 ATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNL 250 (269)
Q Consensus 195 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~~ 250 (269)
. ....+|.+||.+++.+++++++
T Consensus 62 ~---------------------------------~~~~~~~~gC~~~i~~~~~~~~ 84 (84)
T cd03152 62 E---------------------------------GLENLITKSCPDAIDDVFNSKL 84 (84)
T ss_pred C---------------------------------chhhhccCCCcHHHHHHHHccC
Confidence 1 0134578899999999998763
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=99.25 E-value=9.7e-12 Score=89.09 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=61.9
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhCCC--hhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCccc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYRDD--ADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCIN 194 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~~ 194 (269)
|+++++++..+ .+.+++.++.|.++ ...+.+||.+|+.|+|||++ ||+|+..+ .+|.+|...
T Consensus 1 ~v~r~~v~~~i-~~~l~~~~~~y~~~~~~~~~~~~d~iQ~~l~CCG~~--~~~d~~~~-------------~~~~~C~~~ 64 (84)
T cd03151 1 FINKDQIIKEV-QNFYDSAYQDAVTDTRSKGTAVLKTFHSTLDCCGKG--NLTALLSL-------------LSTDLCPKK 64 (84)
T ss_pred CCcHHHHHHHH-HHHHHHHHHHHccCcchhHHHHHHHHHHhcCCCCCC--CCcchHHH-------------HHhCCCCCc
Confidence 46888998888 44556777888653 24677999999999999999 99998642 478888430
Q ss_pred cccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHh
Q psy8209 195 ATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERN 249 (269)
Q Consensus 195 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~ 249 (269)
...+.++|.+++.++++.+
T Consensus 65 ------------------------------------~~~~~~~C~~~i~~~~~~~ 83 (84)
T cd03151 65 ------------------------------------LLLDTKDCHQEIDDLFSEK 83 (84)
T ss_pred ------------------------------------cccCCCCccHHHHHHHhcc
Confidence 1146789999999999865
No 20
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=92.30 E-value=0.75 Score=37.77 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy8209 26 FIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALREN 91 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~ 91 (269)
+++.+.|++.+++|+....+..- ....+.++. +.....+.++++.|..+++.++.|.++...+-
T Consensus 3 ~~~~v~g~~~~~~gl~G~~~~~y-Allldye~g-~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~~~ 66 (196)
T PF06770_consen 3 IILFVVGSAAFVFGLMGIVDERY-ALLLDYENG-SSVFNCSGLVFVYGPLLLLVTTWGVYKITSKM 66 (196)
T ss_pred chhHHHHHHHHHHHhhheecCce-eeEEEecCC-CccEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888888888888776521 111122221 11233344578999999999999887777543
No 21
>KOG4433|consensus
Probab=88.76 E-value=3.5 Score=38.47 Aligned_cols=46 Identities=26% Similarity=0.523 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q psy8209 61 VILNIALVLVILGAIIFIVSFAGCVGALRENTCLLKFYSLCLLIFFLL 108 (269)
Q Consensus 61 ~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il~~~ 108 (269)
.+.++++++ +=.+.+++.++++.|.+|+|||.++.|.++=++.+++
T Consensus 207 ~~RW~~~v~--lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 207 SYRWLAYVL--LLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 345555443 3346677888899999999999999998776655554
No 22
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=82.83 E-value=11 Score=30.82 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeEec
Q psy8209 21 IFLLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 21 l~~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
+-++-.+|+++|..++.+|..-++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRf 30 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRL 30 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677788888888887766544
No 23
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=81.89 E-value=0.44 Score=37.12 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy8209 26 FIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALRENTCLLKFYSLCLLIF 105 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il 105 (269)
++-.++|+..+.+|+...... .. ... ... .-+-.|++.++.|.+|..+..|.+|+++..+.++-++-
T Consensus 4 ~~qI~lGi~~i~lGi~~~~~~---~~--~~~-----~~~---~piW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s 70 (150)
T PF04103_consen 4 VIQILLGILSIVLGIIALSLS---SS--VLV-----YIG---YPIWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVS 70 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hH--HHH-----Hhc---ccHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 345677888888887776544 11 000 011 12445778888999998888999999988888777666
Q ss_pred HHHHHH
Q psy8209 106 FLLEML 111 (269)
Q Consensus 106 ~~~~i~ 111 (269)
++.-++
T Consensus 71 ~~~a~~ 76 (150)
T PF04103_consen 71 ALLALA 76 (150)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555443
No 24
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=81.86 E-value=15 Score=34.22 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy8209 97 FYSLCLLIFFLLEMLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 97 ~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~ 127 (269)
.|.+.++++.++-.++.+.+|.-.+++.+.+
T Consensus 81 c~~~sLiiltL~~~aaIi~~f~GN~~~h~gV 111 (418)
T cd07912 81 CLKWSLVIATLLCCAAIGVGLYGNDETHDGV 111 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHhhhH
Confidence 4555555544444444445666666666655
No 25
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.84 E-value=14 Score=30.16 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8209 67 LVLVILGAIIFIVSFAG 83 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~G 83 (269)
.+.+++|+++++.|+.+
T Consensus 9 i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 9 IILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666655555555
No 26
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=79.82 E-value=32 Score=28.23 Aligned_cols=83 Identities=24% Similarity=0.359 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q psy8209 17 VKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALRENTCLLK 96 (269)
Q Consensus 17 ~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~ 96 (269)
+|.++ +++.+++++.++-++.+....++. .... ..+.+. +. -.+ .++.+++|..|.-|+|..+|.
T Consensus 37 lk~l~-~~h~ll~l~~~a~v~~~~L~~i~~---~~~p------~p~~We-y~-~~l---S~ip~~~G~~s~~rN~i~~l~ 101 (186)
T PF07086_consen 37 LKKLI-LFHALLWLLMAAKVSVDILLEISE---LQIP------SPYQWE-YI-WCL---SLIPSLLGLLSLRRNNISLLR 101 (186)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhc---cccC------ChhHHH-HH-HHH---HHHHHHHHHHhcccchHHHHH
Confidence 55544 568888888888777776644332 1111 111111 11 122 334566777777777778888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8209 97 FYSLCLLIFFLLEMLVAV 114 (269)
Q Consensus 97 ~y~~ll~il~~~~i~~~i 114 (269)
.|++-.+++-+.-++.+.
T Consensus 102 ~y~~~~~~~gl~pl~~g~ 119 (186)
T PF07086_consen 102 LYMIGSSLFGLLPLIYGA 119 (186)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888766665555444443
No 27
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=79.65 E-value=8.3 Score=35.84 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q psy8209 75 IIFIVSFAGCVGALRENTCLLKFYSLCLLIFFL 107 (269)
Q Consensus 75 ~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il~~ 107 (269)
+.+++.+++++|..|.|||.+.++.++-++.++
T Consensus 218 ~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~l~ 250 (418)
T cd07912 218 LLLVICLVLLVGLARHSRCLLIVFSVCGLFALI 250 (418)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 445677778999999999999998665444433
No 28
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.84 E-value=9.4 Score=31.13 Aligned_cols=54 Identities=26% Similarity=0.459 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8209 23 LLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVI-LNIALVLVILGAIIFIVSFAGC 84 (269)
Q Consensus 23 ~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~G~~~~~~~~~G~ 84 (269)
+.+++..++|+++++.|+-.++-. . ..+. ..+ ......++++|++++..|+.-+
T Consensus 6 i~~i~~iilgilli~~gI~~Lv~~---~--~~l~---~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAALVLF---I--SGLG---ALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H--hhhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777776666554322 0 0010 111 1223345666776666666543
No 29
>PF14927 Neurensin: Neurensin
Probab=76.09 E-value=20 Score=28.03 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=24.3
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhhhhe
Q psy8209 10 FTYVSPCVKYMIFLLNFIFWLLGALLIAVGLYA 42 (269)
Q Consensus 10 ~~~~~~~~k~~l~~~N~l~~l~G~~li~~g~~~ 42 (269)
.++..-|-|. -+++-++|+++|++++.+|--+
T Consensus 37 ~~w~s~~wkV-~~i~g~l~Ll~Gi~~l~vgY~v 68 (140)
T PF14927_consen 37 SRWSSVCWKV-GFISGLLLLLLGIVALTVGYLV 68 (140)
T ss_pred CCCcchhHHH-HHHHHHHHHHHHHHHHHhhccc
Confidence 3455666676 5567899999999999998654
No 30
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=74.89 E-value=3.4 Score=28.03 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhheeEec
Q psy8209 24 LNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 24 ~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
-|.+++.+|++++++|.++....
T Consensus 6 ~Nyill~iG~~vIilGfilMsg~ 28 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSGG 28 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeCC
Confidence 48999999999999999888754
No 31
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=74.31 E-value=13 Score=36.04 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q psy8209 21 IFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALRENTCLLKFYSL 100 (269)
Q Consensus 21 l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ 100 (269)
+.+..+++.++|+++++-|+|+..-. . +.|+ +..|+.+++.+++ .++++|--|..|..
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lg---g---------s~yy------~iagl~~l~~~~l----l~~~k~aal~lya~ 60 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALG---G---------SWYY------LIAGLVLLLSAWL----LLRRKRAALWLYAL 60 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeC---C---------chHH------HHHHHHHHHHHHH----HhccchhHHHHHHH
Confidence 34566788899999999999887432 1 2221 3455555555555 56888888999988
Q ss_pred HHHHHHH
Q psy8209 101 CLLIFFL 107 (269)
Q Consensus 101 ll~il~~ 107 (269)
+++...+
T Consensus 61 ~~~~t~~ 67 (773)
T COG4993 61 VLLGTLV 67 (773)
T ss_pred HHHHHhH
Confidence 7765544
No 32
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=71.39 E-value=3.7 Score=38.05 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q psy8209 74 AIIFIVSFAGCVGALRENTCLLKFYSLCLLIFF 106 (269)
Q Consensus 74 ~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il~ 106 (269)
++.+++.+++++|..|++||.+..+.++-++.+
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~l 226 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLAL 226 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHHH
Confidence 355567788899999999998876665544433
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=71.37 E-value=36 Score=34.58 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy8209 93 CLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 93 ~lL~~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~ 127 (269)
|.-..+.++|+++.++.+++.+.+|+-...+.+.+
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~aF~~n~~l~~~v 171 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICAFVANQQLSTGV 171 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777777777666555444
No 34
>cd03153 PHEMX_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Phemx (pan hematopoietic expression) or TSSC6 may play a role in hematopoietic cell function.
Probab=70.24 E-value=6.4 Score=27.71 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCccccccCCCC
Q psy8209 145 LQNLIDFAQQEFQCCGLSSEGY 166 (269)
Q Consensus 145 ~~~~~d~iQ~~l~CCG~~~~~~ 166 (269)
..+....||..|.|||.+ +|
T Consensus 30 ~~qel~~iqd~FlccGk~--Sp 49 (87)
T cd03153 30 VRQELAAIQDTFLCCGKK--SP 49 (87)
T ss_pred hHHHHhcccchhhhccCC--Ch
Confidence 455677899999999999 76
No 35
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=68.02 E-value=7.5 Score=29.29 Aligned_cols=49 Identities=29% Similarity=0.522 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8209 22 FLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFA 82 (269)
Q Consensus 22 ~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~ 82 (269)
+++-++++++|.+++.+|..+.... -+ .+ ..-.+.++++|+++++=|+.
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~---i~-~~--------~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGH---ID-GD--------RDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc---cC-CC--------CcccchHHHHHHHHHhccHH
Confidence 3455778899999999998887554 11 01 11124567788888776654
No 36
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=67.13 E-value=33 Score=22.51 Aligned_cols=47 Identities=23% Similarity=0.489 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q psy8209 30 LLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALREN 91 (269)
Q Consensus 30 l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~ 91 (269)
+.|+..+.+|+++...+ . .....+...+|...++.|+.-...+.+++
T Consensus 1 i~Gil~iv~Gi~~l~~p---~------------~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~ 47 (72)
T PF03729_consen 1 ISGILFIVLGILLLFNP---D------------ASLAALAIILGIWLIISGIFQLISAFRRR 47 (72)
T ss_pred CHHHHHHHHHHHHHHhH---H------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35788888888887655 1 11223346778888888888777777643
No 37
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=66.64 E-value=40 Score=28.28 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy8209 67 LVLVILGAIIFIVSFA-GCVGALRENTCLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~-G~~ga~~~~~~lL~~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~ 127 (269)
.+++..+.+..++|++ |.|+-++++.- ..|.+++++..++-+++-++.+.+.+.++.++
T Consensus 108 Lil~~~s~lf~~lsi~~~iCa~c~~~~a--i~~~v~~~ia~l~S~~g~~iF~~~a~~~d~r~ 167 (211)
T PF07062_consen 108 LILISFSMLFALLSICFGICAPCHPSFA--IFYTVLVFIAALLSLIGLGIFFFNAHMVDNRF 167 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 3455555555555543 55665555555 56666666666665555555555555554443
No 38
>PF15345 TMEM51: Transmembrane protein 51
Probab=66.44 E-value=2.3 Score=35.81 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8209 63 LNIALVLVILGAIIFIVSF 81 (269)
Q Consensus 63 ~~~~~~li~~G~~~~~~~~ 81 (269)
+.++|+|++.|++++++++
T Consensus 58 ~SVAyVLVG~Gv~LLLLSI 76 (233)
T PF15345_consen 58 FSVAYVLVGSGVALLLLSI 76 (233)
T ss_pred EEEEEehhhHHHHHHHHHH
Confidence 4567899999999999988
No 39
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=66.31 E-value=32 Score=28.22 Aligned_cols=50 Identities=24% Similarity=0.540 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q psy8209 28 FWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALRENT 92 (269)
Q Consensus 28 ~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~ 92 (269)
+.+.|++++.+|++.+.++ . .+.......+|.++++.|++=..++..+++
T Consensus 22 ~l~~Gv~lii~Gl~~l~~P---~------------~s~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 22 VLLLGVLLIILGLLALFNP---A------------ISTVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHhH---H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577888888888887554 1 112223456777777777766666665444
No 40
>KOG4054|consensus
Probab=65.59 E-value=70 Score=25.74 Aligned_cols=80 Identities=18% Similarity=0.384 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q psy8209 17 VKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVI-LNIALVLVILGAIIFIVSFAGCVGALRENTCLL 95 (269)
Q Consensus 17 ~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL 95 (269)
+|.++++ ..++++++++-..+|-.-.... + +..+.+ ...++. ..++-+++|..+.-+++...|
T Consensus 37 lK~lifv-h~lI~v~mlak~~l~hl~~~k~---d------~v~~py~wey~~~------~SllpslLgllsf~rnkv~~L 100 (183)
T KOG4054|consen 37 LKKLIFV-HALIWVLMLAKMSLGHLRLLKH---D------QVPMPYQWEYVWA------LSLLPSLLGLLSFRRNKVSYL 100 (183)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhhhhhhhhc---c------cCCCchhHHHHHH------HHHHHHHHHHHhcccccHHHH
Confidence 5665554 7888888888877553222211 1 111222 112221 223567788888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8209 96 KFYSLCLLIFFLLEMLV 112 (269)
Q Consensus 96 ~~y~~ll~il~~~~i~~ 112 (269)
..|.+.+.+..+.-+..
T Consensus 101 ~l~m~a~~lf~i~p~~~ 117 (183)
T KOG4054|consen 101 VLYMIAMGLFMIFPLVY 117 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877766554443
No 41
>KOG4812|consensus
Probab=62.98 E-value=13 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q psy8209 63 LNIALVLVILGAIIFIVSFAGCVGALRENTC 93 (269)
Q Consensus 63 ~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~ 93 (269)
++..++++++|.++++.++++.+-.-|..+.
T Consensus 223 ~wLwwi~~vlG~ll~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 223 YWLWWIFLVLGLLLFLRGFINYIKVRRMEEK 253 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH
Confidence 5666788999999999999998776665544
No 42
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=62.07 E-value=54 Score=25.55 Aligned_cols=31 Identities=23% Similarity=0.583 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhccchhHHHHH
Q psy8209 67 LVLVILGAIIFIVSFA-GCVGALRENTCLLKF 97 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~-G~~ga~~~~~~lL~~ 97 (269)
..++.+|+++.+++++ +.++.+++++.+...
T Consensus 72 ~~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 72 IAFLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 4456667777666644 778888877754444
No 43
>PRK11383 hypothetical protein; Provisional
Probab=59.58 E-value=83 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhee
Q psy8209 21 IFLLNFIFWLLGALLIAVGLYAF 43 (269)
Q Consensus 21 l~~~N~l~~l~G~~li~~g~~~~ 43 (269)
++...-+.++.|+++..+|+|--
T Consensus 12 f~~~sw~al~~g~~~y~iGLwnA 34 (145)
T PRK11383 12 FSIVSWIALVGGIVTYLLGLWNA 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556677889999999999974
No 44
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=58.66 E-value=34 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.380 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhee
Q psy8209 15 PCVKYMIFLLNFIFWLLGALLIAVGLYAF 43 (269)
Q Consensus 15 ~~~k~~l~~~N~l~~l~G~~li~~g~~~~ 43 (269)
+..|.+--.+.++.+++|.+.+.++.+..
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~ 33 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLI 33 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888999999999998888765
No 45
>PRK10209 acid-resistance membrane protein; Provisional
Probab=57.60 E-value=65 Score=26.34 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8209 27 IFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGALR 89 (269)
Q Consensus 27 l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~~ 89 (269)
.+.+.|+..+.+|+....++ . .+...+.+.+|..+++.|+....++.+
T Consensus 23 ~~li~Gil~ivlGi~~l~~P---~------------~~~~~~~~~~g~~ll~~Gi~~l~~~~~ 70 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFP---F------------VSGDALSTVVGILLICSGIALIVGLFA 70 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhH---H------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888887655 1 111112345666666667666665443
No 46
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=56.99 E-value=42 Score=27.22 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchh
Q psy8209 68 VLVILGAIIFIVSFAGCVGALRENT 92 (269)
Q Consensus 68 ~li~~G~~~~~~~~~G~~ga~~~~~ 92 (269)
.+++.++++++++++-.....+..+
T Consensus 34 ~~~~a~i~l~ilai~q~~~~~~~~~ 58 (182)
T PF09323_consen 34 LLYFAAILLLILAIVQLWRWFRPKR 58 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777776665443
No 47
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=53.51 E-value=1e+02 Score=23.89 Aligned_cols=19 Identities=21% Similarity=0.453 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhheeEec
Q psy8209 28 FWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 28 ~~l~G~~li~~g~~~~~~~ 46 (269)
+.+.|.+++.+|+.-..+.
T Consensus 2 l~ivG~IL~Lial~~is~~ 20 (139)
T PF06195_consen 2 LSIVGLILLLIALKEISDA 20 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5688999999999887655
No 48
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=52.62 E-value=96 Score=23.19 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q psy8209 62 ILNIALVLVILGAIIFIVSFAGCVGALRENTCLLKFYSLCL 102 (269)
Q Consensus 62 ~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll 102 (269)
+...+..++.+|.+++.+|+ .++.++.++.+++++=
T Consensus 11 ~R~~al~lif~g~~vmy~gi-----~f~~~~~im~ifmllG 46 (114)
T PF11023_consen 11 IRTFALSLIFIGMIVMYIGI-----FFKASPIIMVIFMLLG 46 (114)
T ss_pred HHHHHHHHHHHHHHHHhhhh-----hhcccHHHHHHHHHHH
Confidence 34456677888888888764 3466666666655544
No 49
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=52.16 E-value=39 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy8209 66 ALVLVILGAIIFIVSFAGCVGAL 88 (269)
Q Consensus 66 ~~~li~~G~~~~~~~~~G~~ga~ 88 (269)
.+++.++|+..++.++.|.|-..
T Consensus 33 ~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHCcCHhH
Confidence 34566788888888888877654
No 50
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=51.81 E-value=34 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhheeEec
Q psy8209 24 LNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 24 ~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
.|++..+...+++++|+|++..+
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~r 25 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLER 25 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777888888889999988644
No 51
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=51.47 E-value=9.3 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.281 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8209 64 NIALVLVILGAIIFIVSFAG 83 (269)
Q Consensus 64 ~~~~~li~~G~~~~~~~~~G 83 (269)
...+.+++.|++..++|+++
T Consensus 39 ~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 39 DKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred chhHHHHHhHHHHHHHHHhh
Confidence 34456778888888887764
No 52
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=49.83 E-value=1.4e+02 Score=24.33 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhheeEec
Q psy8209 23 LLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 23 ~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
.+..++-..++++..+|++...+.
T Consensus 72 ~~H~~L~~~Al~~~vvGl~avf~~ 95 (179)
T cd08762 72 LLHAGLLLLAFILTVIGLCAVFNF 95 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555666666665443
No 53
>PF14967 FAM70: FAM70 protein
Probab=49.69 E-value=8.5 Score=33.74 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhH
Q psy8209 26 FIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVGAL-RENTC 93 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ga~-~~~~~ 93 (269)
+.+++.++.++.+|+..-... ++. .+.+ +++. ++++ +-+|+|.+|+. -|||.
T Consensus 32 ~~lL~vS~~iltvGLaatTRT---eNV-tVgG-----YyPG-IILg------FGSFLGIiGi~LvENrR 84 (327)
T PF14967_consen 32 VSLLVVSLLILTVGLAATTRT---ENV-TVGG-----YYPG-IILG------FGSFLGIIGIHLVENRR 84 (327)
T ss_pred HHHHHHHHHHHHhhhheeeee---cce-Eecc-----cccc-eEEe------ehhHHHHhhhhhhhcCc
Confidence 445566777777887776544 221 2222 2232 2223 34677878876 46664
No 54
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=46.14 E-value=1.3e+02 Score=24.92 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q psy8209 70 VILGAIIFIVSFAGCVGALRENTCLLKFYSLCLLIFFLLE 109 (269)
Q Consensus 70 i~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il~~~~ 109 (269)
|.+-.+-+++-++|.+|+..-++..+.+|++-.++-+..-
T Consensus 37 Il~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wN 76 (200)
T PF05640_consen 37 ILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWN 76 (200)
T ss_pred HHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHh
Confidence 4555555666688889999999999999998777644443
No 55
>PHA01514 O-antigen conversion protein C
Probab=44.78 E-value=1.7e+02 Score=27.92 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q psy8209 67 LVLVILGAIIFIVSFAGCVGALRENTCLLKFYSLCLL 103 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~ 103 (269)
-++++.|.+++.++..-+. |.++.|.....++.++.
T Consensus 321 Rvligfg~~m~~~~~~~~~-a~~~~~~~~~~~~~~l~ 356 (485)
T PHA01514 321 RVLIGMGGFMFFCCLCVFY-AFEDKQLISRIYFSFIL 356 (485)
T ss_pred eeeeehHHHHHHHHHHHHH-HcccccchhhHHHHHHH
Confidence 4667888888777776444 66666665555553333
No 56
>PHA02898 virion envelope protein; Provisional
Probab=43.89 E-value=1.1e+02 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=10.5
Q ss_pred HHHHHHHHHhh-hheeEec
Q psy8209 29 WLLGALLIAVG-LYAFLDK 46 (269)
Q Consensus 29 ~l~G~~li~~g-~~~~~~~ 46 (269)
++.|+++++++ ++..+|.
T Consensus 15 li~GIiLL~~ACIfAfidf 33 (92)
T PHA02898 15 VAFGIILLIVACICAYIEL 33 (92)
T ss_pred HHHHHHHHHHHHHHheehh
Confidence 35666666665 5555555
No 57
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=43.12 E-value=1.8e+02 Score=23.67 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy8209 67 LVLVILGAIIFIVSFA--GCVGALRENT--CLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~--G~~ga~~~~~--~lL~~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~ 127 (269)
.++..+|++...++++ +..+...+.| .....-.++-++.++..+++.+........+++.+
T Consensus 118 ~~l~~ia~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~lva~~i~t~~~~~~~~~i 182 (212)
T PF06687_consen 118 FILYPIAIVFTFLALILSGLLAFFSRPRNTILSLVASILSLLAFIFLLVAAIIATALFVIIRNAI 182 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444333 3335555433 55555555555555555555555444444444444
No 58
>PRK02935 hypothetical protein; Provisional
Probab=42.50 E-value=1.4e+02 Score=22.10 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q psy8209 62 ILNIALVLVILGAIIFIVSFAGCVGALRENTCLLKFYSLC 101 (269)
Q Consensus 62 ~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~l 101 (269)
....+..++.+|.+++.+|++ +++++.++.+|.++
T Consensus 12 iRt~aL~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~~ 46 (110)
T PRK02935 12 IRTFALSLVFIGFIVMYLGIF-----FRESIIIMTIFMLL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHH
Confidence 344556778889888888853 37777777666653
No 59
>COG3462 Predicted membrane protein [Function unknown]
Probab=41.17 E-value=1.5e+02 Score=22.08 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHhh
Q psy8209 142 DADLQNLIDFAQQ 154 (269)
Q Consensus 142 ~~~~~~~~d~iQ~ 154 (269)
++..++..+.+|+
T Consensus 105 EEEY~r~~~~irr 117 (117)
T COG3462 105 EEEYRRIIRTIRR 117 (117)
T ss_pred HHHHHHHHHHhcC
Confidence 3456666776663
No 60
>KOG3950|consensus
Probab=40.78 E-value=46 Score=28.44 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8209 92 TCLLKFYSLCLLIFFLLEMLVAVIGFVF 119 (269)
Q Consensus 92 ~~lL~~y~~ll~il~~~~i~~~i~~~~~ 119 (269)
|.+|.+|..+|++++++-++..+|.+..
T Consensus 34 KrcLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 34 KRCLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999988754
No 61
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=39.92 E-value=1.5e+02 Score=21.70 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhccchhH
Q psy8209 70 VILGAIIFIVSFAGCVGALRENTC 93 (269)
Q Consensus 70 i~~G~~~~~~~~~G~~ga~~~~~~ 93 (269)
+.++++++.+|..|... |+|-.
T Consensus 8 l~laa~LF~IGl~Gv~~--rrN~i 29 (100)
T COG0713 8 LILAALLFTIGLYGLLT--RRNLI 29 (100)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH
Confidence 45677777788777665 44443
No 62
>PRK11383 hypothetical protein; Provisional
Probab=39.38 E-value=1.3e+02 Score=23.55 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q psy8209 60 DVILNIALVLVILGAIIFIVSFAGCVGALRENTCLLK 96 (269)
Q Consensus 60 ~~~~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~lL~ 96 (269)
..+...+++.+++|+++.++|++=.+=...|+-..+.
T Consensus 10 ~af~~~sw~al~~g~~~y~iGLwnA~~~LsEKGyY~~ 46 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFA 46 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcccHHHH
Confidence 3456677788888888888887755555556555333
No 63
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=38.71 E-value=1.9e+02 Score=22.54 Aligned_cols=30 Identities=17% Similarity=0.458 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy8209 98 YSLCLLIFFLLEMLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 98 y~~ll~il~~~~i~~~i~~~~~~~~~~~~~ 127 (269)
+...+.+.++.-+..++..+++...++.+.
T Consensus 67 ~~~g~~~~~ia~li~~v~~~i~~~~IdP~~ 96 (163)
T PF13858_consen 67 FKVGFLISLIAGLISAVFQYIYFNYIDPDF 96 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 444444444555555555565555544443
No 64
>PRK11901 hypothetical protein; Reviewed
Probab=38.64 E-value=33 Score=30.63 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy8209 67 LVLVILGAIIFIVSFAGCVGALR 89 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~G~~ga~~ 89 (269)
+++|++|++++++-++|+-.|+|
T Consensus 37 h~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 68899998888777777666654
No 65
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=37.62 E-value=1.2e+02 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.637 Sum_probs=9.5
Q ss_pred HHHHHHHHHhh-hheeEec
Q psy8209 29 WLLGALLIAVG-LYAFLDK 46 (269)
Q Consensus 29 ~l~G~~li~~g-~~~~~~~ 46 (269)
++.|+++++++ ++..+|.
T Consensus 15 li~GiiLL~~aCIfAfidf 33 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDF 33 (92)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 45666666655 4444443
No 66
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=37.60 E-value=1.6e+02 Score=21.51 Aligned_cols=28 Identities=14% Similarity=0.489 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhheeEec
Q psy8209 19 YMIFLLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 19 ~~l~~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
.+..+.+.+++++.++.+++++|.+++.
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999999988765
No 67
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=37.30 E-value=1.5e+02 Score=21.14 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy8209 69 LVILGAIIFIVSFAGCVGAL 88 (269)
Q Consensus 69 li~~G~~~~~~~~~G~~ga~ 88 (269)
....+...++.+++|..|+.
T Consensus 58 ~~~~~i~~ii~~il~iia~i 77 (100)
T PF13273_consen 58 GIILGIIAIISSILGIIASI 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666665
No 68
>KOG4556|consensus
Probab=37.00 E-value=1.8e+02 Score=23.69 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q psy8209 69 LVILGAIIFIVSFAGCVGALRENTCLLKFYSLCLLIFFLL 108 (269)
Q Consensus 69 li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il~~~ 108 (269)
-+..-.+-+++-++|.+|+...++..+.+|+.-+.+-.-.
T Consensus 33 pilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtw 72 (205)
T KOG4556|consen 33 PILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTW 72 (205)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455556666777788889999999999998876654433
No 69
>COG2245 Predicted membrane protein [Function unknown]
Probab=36.39 E-value=2.3e+02 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.652 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhheeEec
Q psy8209 26 FIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~ 46 (269)
.++.+.|.+++.+|++++.+.
T Consensus 28 ~ilSlVG~VLvlval~~iS~~ 48 (182)
T COG2245 28 WILSLVGLVLVLVALYMISKQ 48 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999998654
No 70
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=36.21 E-value=59 Score=18.93 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy8209 67 LVLVILGAIIFIVSFAGCVGALR 89 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~G~~ga~~ 89 (269)
++-+++|.+++++++-|.....+
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 45577888888888888776654
No 71
>KOG1619|consensus
Probab=36.21 E-value=2.8e+02 Score=23.79 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccch
Q psy8209 14 SPCVKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCV--GALREN 91 (269)
Q Consensus 14 ~~~~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~--ga~~~~ 91 (269)
..+.|.+...+...+=+.++++..+|+|..++..+.....++. +.-.+.....+.+=.+-.+.||+-+. |+.+.-
T Consensus 81 r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~Nfy---SLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~ 157 (245)
T KOG1619|consen 81 RYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFY---SLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESY 157 (245)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccee---eHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH
Confidence 3445666667777777888888888888877663322222322 22222222333333344455555433 444444
Q ss_pred hHH
Q psy8209 92 TCL 94 (269)
Q Consensus 92 ~~l 94 (269)
|..
T Consensus 158 Rs~ 160 (245)
T KOG1619|consen 158 RSR 160 (245)
T ss_pred Hhh
Confidence 433
No 72
>PF15471 TMEM171: Transmembrane protein family 171
Probab=35.75 E-value=28 Score=30.20 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhee
Q psy8209 20 MIFLLNFIFWLLGALLIAVGLYAF 43 (269)
Q Consensus 20 ~l~~~N~l~~l~G~~li~~g~~~~ 43 (269)
-+.+|-++|+..|+.+-++|+|+=
T Consensus 110 Q~LIFGFLFLTSGmLISvLGiWVP 133 (319)
T PF15471_consen 110 QFLIFGFLFLTSGMLISVLGIWVP 133 (319)
T ss_pred HHHHHHHHHHhhhhhhhhheeeec
Confidence 355677999999999999999983
No 73
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=35.09 E-value=2e+02 Score=26.09 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhheeEec
Q psy8209 23 LLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 23 ~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
++|..-...+++++.+|++++...
T Consensus 178 l~~~~~~a~~~i~~~iG~yll~kG 201 (344)
T PF04123_consen 178 LLGYPAYALGIILLLIGLYLLYKG 201 (344)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHh
Confidence 344444566778888898888654
No 74
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=33.63 E-value=1.7e+02 Score=20.59 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8209 93 CLLKFYSLCLLIFFLL 108 (269)
Q Consensus 93 ~lL~~y~~ll~il~~~ 108 (269)
.-+..+..+++++|++
T Consensus 24 s~li~~~LilfviF~~ 39 (83)
T PF05814_consen 24 SELIITLLILFVIFFC 39 (83)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555555
No 75
>PRK10209 acid-resistance membrane protein; Provisional
Probab=33.23 E-value=1.9e+02 Score=23.57 Aligned_cols=25 Identities=0% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchh
Q psy8209 68 VLVILGAIIFIVSFAGCVGALRENT 92 (269)
Q Consensus 68 ~li~~G~~~~~~~~~G~~ga~~~~~ 92 (269)
+.+.+|+..++.|+.....+.+.++
T Consensus 107 l~~l~g~~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 107 LAAFIAGLFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456777777778887777765443
No 76
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=33.05 E-value=58 Score=27.73 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q psy8209 63 LNIALVLVILGAIIFIVSFAGCVGALRENTCL 94 (269)
Q Consensus 63 ~~~~~~li~~G~~~~~~~~~G~~ga~~~~~~l 94 (269)
.+.+++++++|.++++-|+++++=+-|.-|..
T Consensus 194 ~wla~~Lm~~G~fI~irsi~dY~rVKR~Er~i 225 (233)
T PF10176_consen 194 PWLAYILMAFGWFIFIRSIIDYWRVKRMERLI 225 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999988777665543
No 77
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=32.72 E-value=1.2e+02 Score=22.44 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhheeEec
Q psy8209 25 NFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 25 N~l~~l~G~~li~~g~~~~~~~ 46 (269)
++++.+...+++++|+|+..++
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~ 23 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSR 23 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788888889999987644
No 78
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=32.06 E-value=5.1e+02 Score=25.55 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q psy8209 65 IALVLVILGAIIFIVSFAGCVGALRE 90 (269)
Q Consensus 65 ~~~~li~~G~~~~~~~~~G~~ga~~~ 90 (269)
....+++.|+.+.+++..|.+.....
T Consensus 231 ~~~~~~~~g~yl~~~~~~~~~~~~~g 256 (679)
T TIGR02916 231 HSATLLGAGLYLLAMAGAGYYLRYFG 256 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34467788888888888887765543
No 79
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=31.63 E-value=1.9e+02 Score=20.54 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy8209 67 LVLVILGAIIFIVSF 81 (269)
Q Consensus 67 ~~li~~G~~~~~~~~ 81 (269)
..++..|+++++.++
T Consensus 48 ~~~~~~~i~~li~~l 62 (97)
T PF12650_consen 48 KFMLIIGIILLIGGL 62 (97)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556655555444
No 80
>PF15125 TMEM238: TMEM238 protein family
Probab=30.98 E-value=1.7e+02 Score=19.59 Aligned_cols=46 Identities=35% Similarity=0.587 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8209 21 IFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCV 85 (269)
Q Consensus 21 l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ 85 (269)
++.+-++|=+.|++++..|+..-.+. . | .++=.|.+++..|++++.
T Consensus 6 ~f~laV~fD~vGl~~Ll~GiFa~l~f------~------D-------~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 6 FFWLAVVFDVVGLVMLLTGIFAPLDF------Y------D-------FLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hhHHHHHHHHhhHHHHHHHHhcchhH------H------H-------HHHHHhHHHHHHHHHHHH
Confidence 34466788888999999888765432 1 1 234456666667766643
No 81
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.94 E-value=2.6e+02 Score=21.93 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeEec
Q psy8209 20 MIFLLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 20 ~l~~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
++-++-.+++++|..++.+|..-+...
T Consensus 7 ~~~il~~ill~lG~~f~ligaIGllRf 33 (145)
T PRK12586 7 IFSLIAAIMILLGSIIALISAIGIVKF 33 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566777888888888877666544
No 82
>PF11677 DUF3273: Protein of unknown function (DUF3273); InterPro: IPR021691 Some members in this family of proteins are annotated as multi-transmembrane proteins however this cannot be confirmed. Currently this family has no known function.
Probab=30.44 E-value=2.8e+02 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhchhhHHH
Q psy8209 107 LLEMLVAVIGFVFPHHIQA 125 (269)
Q Consensus 107 ~~~i~~~i~~~~~~~~~~~ 125 (269)
+....+.+|++.+.+.+++
T Consensus 220 ~al~~~t~WA~~FEP~~~~ 238 (265)
T PF11677_consen 220 LALMAATLWAFLFEPLLNK 238 (265)
T ss_pred HHHHHHHHHHHHhhHHhhh
Confidence 4556677888888766554
No 83
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.29 E-value=1.3e+02 Score=21.35 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=10.7
Q ss_pred HHHHHHHHHhh-hheeEec
Q psy8209 29 WLLGALLIAVG-LYAFLDK 46 (269)
Q Consensus 29 ~l~G~~li~~g-~~~~~~~ 46 (269)
++.|+++++++ ++..+|.
T Consensus 15 li~GIiLL~~ACIFAfidF 33 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDF 33 (91)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 45677776665 5555554
No 84
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=30.13 E-value=1.5e+02 Score=18.88 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8209 76 IFIVSFAGCVGALRENTCLLKFYSLCLLIFFLLEMLVAV 114 (269)
Q Consensus 76 ~~~~~~~G~~ga~~~~~~lL~~y~~ll~il~~~~i~~~i 114 (269)
+-+++.+|..-+.|++..+=..|....+++|-.--+..+
T Consensus 5 vtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTi 43 (52)
T PF10958_consen 5 VTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTI 43 (52)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888777777777776666655444333
No 85
>PRK12438 hypothetical protein; Provisional
Probab=29.48 E-value=6.9e+02 Score=26.27 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhe
Q psy8209 17 VKYMIFLLNFIFWLLGALLIAVGLYA 42 (269)
Q Consensus 17 ~k~~l~~~N~l~~l~G~~li~~g~~~ 42 (269)
.|.++.+.-++..++.+.....++|.
T Consensus 16 ~~~l~~~~~~~~~l~~~~~~~~~~~t 41 (991)
T PRK12438 16 ARLLVTAGMGMLALLLFGPRLVDIYT 41 (991)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444456655
No 86
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.78 E-value=1.3e+02 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8209 65 IALVLVILGAIIFIVSFAGCVGA 87 (269)
Q Consensus 65 ~~~~li~~G~~~~~~~~~G~~ga 87 (269)
.+..|+++|.+++++|++=..+-
T Consensus 46 la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 46 LAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567888888888887755554
No 87
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=28.60 E-value=2.5e+02 Score=20.92 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8209 27 IFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCV 85 (269)
Q Consensus 27 l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G~~ 85 (269)
.+.+.+.+++++|+|....+ ++... .....-++.-|+.++++++-...
T Consensus 4 ~~~~~~~~Lf~iGlygil~r---rnli~--------~liglei~~~av~L~lv~~g~~~ 51 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVK---KNLLK--------IIIGLDIMETGVNLLLISIGYVS 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhc---chHHH--------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667788888999976533 22111 11223345566666666654433
No 88
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=27.45 E-value=1.5e+02 Score=22.24 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhheeEec
Q psy8209 26 FIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~ 46 (269)
.++.+...+++++|+|+..++
T Consensus 3 ~~~~~~~~~L~~~G~ylll~r 23 (113)
T PRK08600 3 ILMIIVIGILTAIAVYLILSK 23 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 455666777778999987644
No 89
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=27.19 E-value=91 Score=20.96 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy8209 68 VLVILGAIIFIVSFAGCVGA 87 (269)
Q Consensus 68 ~li~~G~~~~~~~~~G~~ga 87 (269)
.+|++-+++.+++++|+.|.
T Consensus 16 ~LIAvvLLLsIl~~lt~~ai 35 (66)
T PF13179_consen 16 MLIAVVLLLSILAFLTYWAI 35 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 90
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=26.84 E-value=3.2e+02 Score=25.03 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=44.1
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHH-HHHHHHHHHHHHH-------
Q psy8209 6 KRSNFTYVSPCVKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILN-IALVLVILGAIIF------- 77 (269)
Q Consensus 6 ~~~~~~~~~~~~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~G~~~~------- 77 (269)
|-.+.....+..|+.-.=+-..-++.++++|.+..+...+. .+.+-.+.++.... .....+++|.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~n~r~~~ml~al~~I~lfF~~~T~g----~~l~p~Nl~NL~~Q~S~i~imA~GMvlVIv~g~ID 80 (394)
T COG4214 5 KTPTLGGVTRFGRLKSLNLRVYGMLIALALIMLFFQILTGG----VFLSPRNLSNLLRQNSIIGILALGMVLVIVAGEID 80 (394)
T ss_pred cccCcCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCC----eEeccchHHHHHHhhhHHHHHHhcceEEEEecccc
Confidence 34444555667776554444566777777777777666542 12221222233222 2234567777664
Q ss_pred -----HHHHHHHHhhccchhH
Q psy8209 78 -----IVSFAGCVGALRENTC 93 (269)
Q Consensus 78 -----~~~~~G~~ga~~~~~~ 93 (269)
+.+++|-..+....+.
T Consensus 81 LSVGSv~gllGaiaail~v~~ 101 (394)
T COG4214 81 LSVGSVLGLLGAIAAILDVKW 101 (394)
T ss_pred ccHHHHHHHHHHHHHHHhhhc
Confidence 3455555555555543
No 91
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=26.60 E-value=87 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhee
Q psy8209 17 VKYMIFLLNFIFWLLGALLIAVGLYAF 43 (269)
Q Consensus 17 ~k~~l~~~N~l~~l~G~~li~~g~~~~ 43 (269)
-+|.++++.++.+++|+++++.++-.-
T Consensus 35 WNysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 35 WNYSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 467888889999999999998887663
No 92
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.55 E-value=3.6e+02 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy8209 95 LKFYSLCLLIFFLLEMLVAVIGFVFPH 121 (269)
Q Consensus 95 L~~y~~ll~il~~~~i~~~i~~~~~~~ 121 (269)
-..+.++-.+.++.-+++...+|.+++
T Consensus 71 K~~H~~L~~~Al~~~vvGl~avf~~hn 97 (179)
T cd08762 71 KLLHAGLLLLAFILTVIGLCAVFNFHN 97 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355666666666665555555555544
No 93
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=25.81 E-value=2.5e+02 Score=21.48 Aligned_cols=37 Identities=11% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q psy8209 69 LVILGAIIFIVSFAGCVGALRENTCLLKFYSLCLLIF 105 (269)
Q Consensus 69 li~~G~~~~~~~~~G~~ga~~~~~~lL~~y~~ll~il 105 (269)
-++.|+++++.++.+......=+..++..|.+++.++
T Consensus 10 ~~~~~~~~i~~gi~~l~~~~~~~~~i~~~Y~i~fg~l 46 (136)
T PF08507_consen 10 NIIAGILLILAGILSLFNSFSFSSFILGVYCILFGLL 46 (136)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3455555555566555543211255566666655544
No 94
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.80 E-value=99 Score=26.63 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8209 26 FIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFA 82 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~ 82 (269)
++|+++|++++++|+-+.+.. .+..+.....+.....++.+++++++-++.
T Consensus 199 i~f~llgllfliiaigltvGT------~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 199 IIFFLLGLLFLIIAIGLTVGT------WTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhhh------HHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
No 95
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.17 E-value=2.5e+02 Score=28.59 Aligned_cols=10 Identities=30% Similarity=1.139 Sum_probs=6.1
Q ss_pred HHHH-HHHHHh
Q psy8209 77 FIVS-FAGCVG 86 (269)
Q Consensus 77 ~~~~-~~G~~g 86 (269)
.++| ++||||
T Consensus 431 ~~lGLl~G~~G 441 (806)
T PF05478_consen 431 LLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHhhcc
Confidence 3445 448888
No 96
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=25.10 E-value=1.7e+02 Score=21.28 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8209 28 FWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSF 81 (269)
Q Consensus 28 ~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~ 81 (269)
+=++|+++++++...+.+ |..+-..-+ ......++|.+|+.+++=+.
T Consensus 14 lE~lG~~LLv~a~Lsin~------~l~LP~~l~-~~~aai~MIf~Gi~lMlPAa 60 (96)
T PF07214_consen 14 LEVLGMILLVLAYLSIND------YLSLPAPLS-TPTAAIAMIFVGIGLMLPAA 60 (96)
T ss_pred HHHHHHHHHHHHHHHHcc------cccCccccc-CchHHHHHHHHHHHHHHHHH
Confidence 346788888776544433 222211001 13345677778877766543
No 97
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=25.09 E-value=3e+02 Score=20.68 Aligned_cols=17 Identities=35% Similarity=0.813 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8209 67 LVLVILGAIIFIVSFAG 83 (269)
Q Consensus 67 ~~li~~G~~~~~~~~~G 83 (269)
.++++.|+++++-++.+
T Consensus 43 ~~l~~~~~~l~~~~~~~ 59 (141)
T PF07331_consen 43 ILLLILSLLLLVRSFRG 59 (141)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34455555555444443
No 98
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.61 E-value=75 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhheeEec
Q psy8209 22 FLLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 22 ~~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
.+||+++.|..+++++++..+++..
T Consensus 14 ~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 14 KILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhHHHHHHHHHHHHHHHhhhheecC
Confidence 4789999998888888887777643
No 99
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.52 E-value=4.1e+02 Score=21.99 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy8209 25 NFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVI--LNIALVLVILGAIIFIVSFAGCV 85 (269)
Q Consensus 25 N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~G~~~~~~~~~G~~ 85 (269)
|.+.-+++.+++.+|+.+.+-.. -.. ..+++.| ..++...-.+|+.++++|.++.+
T Consensus 2 ~~i~eiI~~vLLliG~~f~liga--IGL---lRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 2 NVIIEIIISIMILIGGLLSILAA--IGV---IRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHH---HhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 33445666677777765543220 111 1122332 22233345566666666665543
No 100
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.50 E-value=3.1e+02 Score=20.67 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeEec
Q psy8209 17 VKYMIFLLNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 17 ~k~~l~~~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
+|-.+-++-.++.++|..+..+|..-+...
T Consensus 2 ~~~~~~~l~~ill~~G~~~~ligaiGllR~ 31 (118)
T PRK12587 2 IKIILISLALIFVIIGALISALAAIGLLRL 31 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355566677888889999988888776554
No 101
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=24.48 E-value=97 Score=26.93 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=25.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8209 86 GALRENTCLLKFYSLCLLIFFLLEMLVAVIGFV 118 (269)
Q Consensus 86 ga~~~~~~lL~~y~~ll~il~~~~i~~~i~~~~ 118 (269)
|..-.++.+++++.++|+++.++-++..+|.+.
T Consensus 5 Gi~Gwrk~cly~~vllL~il~iiNL~LTiwIl~ 37 (264)
T PF04790_consen 5 GIYGWRKRCLYLFVLLLFILAIINLALTIWILK 37 (264)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 334456778899999999999999988887664
No 102
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=24.03 E-value=74 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=13.9
Q ss_pred HHHHHHHH---HHHHHHHHhh
Q psy8209 22 FLLNFIFW---LLGALLIAVG 39 (269)
Q Consensus 22 ~~~N~l~~---l~G~~li~~g 39 (269)
..+|++++ +.|+.++++|
T Consensus 2 ~~ln~lwl~~~l~~l~v~tig 22 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIG 22 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 46788888 8888887776
No 103
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=23.97 E-value=2.9e+02 Score=20.07 Aligned_cols=32 Identities=6% Similarity=0.387 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q psy8209 96 KFYSLCLLIFFLLEMLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 96 ~~y~~ll~il~~~~i~~~i~~~~~~~~~~~~~ 127 (269)
.+|+.+.+++|++.++++.-.+..+..++..+
T Consensus 17 ~~FA~L~i~~FiILLIi~~~IW~~~r~~r~~M 48 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKSIWHDSRQVRIRM 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555566666666666665666666665554
No 104
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.95 E-value=1.4e+02 Score=22.76 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhheeEec
Q psy8209 25 NFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 25 N~l~~l~G~~li~~g~~~~~~~ 46 (269)
++++.+...+++++|+|+..++
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~r 23 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSR 23 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhc
Confidence 3566677778889999988644
No 105
>PRK01741 cell division protein ZipA; Provisional
Probab=23.55 E-value=43 Score=29.99 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHH----Hhhhhee
Q psy8209 24 LNFIFWLLGALLI----AVGLYAF 43 (269)
Q Consensus 24 ~N~l~~l~G~~li----~~g~~~~ 43 (269)
+|++|+|+|+++| +-|+|--
T Consensus 3 Ln~iliILg~lal~~Lv~hgiWsn 26 (332)
T PRK01741 3 LNTILIILGILALVALVAHGIWSN 26 (332)
T ss_pred ceehHHHHHHHHHHHHHHhhhhhh
Confidence 4667777665544 3478873
No 106
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.26 E-value=1.9e+02 Score=21.73 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhheeEec
Q psy8209 26 FIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 26 ~l~~l~G~~li~~g~~~~~~~ 46 (269)
++..+...+++++|+|+..++
T Consensus 3 ~~~~~~~~~L~~~G~Y~il~r 23 (114)
T PRK09094 3 LVLALAIGVLTASGVWLLLRP 23 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhc
Confidence 455566667778999988754
No 107
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.01 E-value=3.4e+02 Score=22.59 Aligned_cols=6 Identities=67% Similarity=0.844 Sum_probs=2.3
Q ss_pred HHHhhc
Q psy8209 83 GCVGAL 88 (269)
Q Consensus 83 G~~ga~ 88 (269)
|..++.
T Consensus 28 ~i~~~l 33 (201)
T COG1422 28 GIGGAL 33 (201)
T ss_pred HHHHHH
Confidence 333443
No 108
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=23.01 E-value=3.9e+02 Score=21.18 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhhhee
Q psy8209 24 LNFIFWLLGALLIAVGLYAF 43 (269)
Q Consensus 24 ~N~l~~l~G~~li~~g~~~~ 43 (269)
+..++-++++++..+|++..
T Consensus 50 iH~~L~~~a~~~~i~Gl~av 69 (153)
T cd08765 50 IHAGLHILAFILAIISVVAV 69 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543
No 109
>KOG2189|consensus
Probab=22.51 E-value=1.4e+02 Score=30.10 Aligned_cols=75 Identities=13% Similarity=0.389 Sum_probs=47.8
Q ss_pred cccccCCCCCccchhHHHHHHHHHHH--HHHHHHHHHhhhheeEeccccccccchh---hhhhhHHHHHHHHHHHHHHHH
Q psy8209 3 NRYKRSNFTYVSPCVKYMIFLLNFIF--WLLGALLIAVGLYAFLDKWEASGLLKLE---TVYDVILNIALVLVILGAIIF 77 (269)
Q Consensus 3 ~~~~~~~~~~~~~~~k~~l~~~N~l~--~l~G~~li~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~G~~~~ 77 (269)
++||..| +...+++-+= |+|-++| +-=|++++.+|.|+..+. +.+.... +..+.++.+-|+++.+|++.+
T Consensus 389 a~YrEvN-Pa~yTiITFP-FLFAVMFGD~GHG~imlL~al~~Vl~E---kkl~~~k~~~EI~~mfF~GRYIIlLMGlFSi 463 (829)
T KOG2189|consen 389 ASYREVN-PAPYTIITFP-FLFAVMFGDLGHGLIMLLAALWMVLNE---KKLASQKIGDEIFNMFFGGRYIILLMGLFSI 463 (829)
T ss_pred ccccccC-CCceeEeehH-HHHHHHhcccchHHHHHHHHHHHHHhc---chhhhhhhHHHHHHHHhcchHHHHHHHHHHH
Confidence 4677777 5555555542 2334555 445889999999997655 2222211 223445667789999999999
Q ss_pred HHHHH
Q psy8209 78 IVSFA 82 (269)
Q Consensus 78 ~~~~~ 82 (269)
-+|++
T Consensus 464 YTGli 468 (829)
T KOG2189|consen 464 YTGLI 468 (829)
T ss_pred HHhhh
Confidence 88875
No 110
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.39 E-value=90 Score=16.45 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy8209 102 LLIFFLLEMLV 112 (269)
Q Consensus 102 l~il~~~~i~~ 112 (269)
++++|++.+++
T Consensus 9 ivVLFILLiIv 19 (24)
T PF09680_consen 9 IVVLFILLIIV 19 (24)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 111
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=22.33 E-value=1.4e+02 Score=23.68 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheeEeccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8209 17 VKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAG 83 (269)
Q Consensus 17 ~k~~l~~~N~l~~l~G~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~G~~~~~~~~~G 83 (269)
+|-++ ++-.+=..+|++++.+.-|+.... .. -.|.++.+++..+.|.+|++|
T Consensus 62 ~rRm~-~~~GiP~~lG~~~f~~~y~l~~~~----~~----------dvP~~~~~~~S~~~Fg~gllG 113 (153)
T PF11947_consen 62 LRRMA-VFVGIPTALGVAVFVVFYYLKSRQ----IV----------DVPPWAVLLVSLVFFGLGLLG 113 (153)
T ss_pred HHHHH-HHhchHHHHHHHHHHHHHHHHhcc----cc----------ccCchHHHHHHHHHHHHHHHh
Confidence 44433 334666778888877666555332 11 124455566666777777777
No 112
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=22.08 E-value=2.5e+02 Score=18.60 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8209 23 LLNFIFWLLGALLIAVG 39 (269)
Q Consensus 23 ~~N~l~~l~G~~li~~g 39 (269)
.+..++.++|++.+.+.
T Consensus 5 ~l~~~~~llg~~~l~i~ 21 (63)
T PF13127_consen 5 ILSLILLLLGVVCLFIF 21 (63)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666777666554
No 113
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=22.01 E-value=1.9e+02 Score=20.76 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=26.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhhhhee
Q psy8209 11 TYVSPCVKYMIFLLNFIFWLLGALLIAVGLYAF 43 (269)
Q Consensus 11 ~~~~~~~k~~l~~~N~l~~l~G~~li~~g~~~~ 43 (269)
+...+-.-.+++++..+.++++.+++..|...-
T Consensus 30 ~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n 62 (97)
T PF06749_consen 30 SSRNRTLAVVFFVLSWIVFIIAEALLLAGASMN 62 (97)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666677888889999999999999998774
No 114
>COG5487 Small integral membrane protein [Function unknown]
Probab=21.08 E-value=2.3e+02 Score=17.94 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy8209 69 LVILGAIIFIVSFAGCVGALR 89 (269)
Q Consensus 69 li~~G~~~~~~~~~G~~ga~~ 89 (269)
.+++.++.-.+|+=|..|+..
T Consensus 8 FlvialIa~~lGFgGiagaaA 28 (54)
T COG5487 8 FLVIALIAGALGFGGIAGAAA 28 (54)
T ss_pred HHHHHHHHHHhCcccHHHHHH
Confidence 344444444445555555544
No 115
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.44 E-value=3.4e+02 Score=20.08 Aligned_cols=18 Identities=0% Similarity=0.202 Sum_probs=7.3
Q ss_pred HHHHHHHhhchhhHHHHH
Q psy8209 110 MLVAVIGFVFPHHIQATL 127 (269)
Q Consensus 110 i~~~i~~~~~~~~~~~~~ 127 (269)
++.+++...+-....+.+
T Consensus 11 i~~~~~~~~~l~~~~~~i 28 (121)
T PF14276_consen 11 IALSIFSNNYLNNSTDSI 28 (121)
T ss_pred HHHHHHHHhhhhhHHHHH
Confidence 344444444433333333
No 116
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=20.25 E-value=2.4e+02 Score=17.82 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchh
Q psy8209 66 ALVLVILGAIIFIVSFAGCVGALRENT 92 (269)
Q Consensus 66 ~~~li~~G~~~~~~~~~G~~ga~~~~~ 92 (269)
.++.+++|+.++.+|+.=......|+-
T Consensus 5 ~~~~f~i~~~~~~iGl~~~~~~l~~KG 31 (53)
T PF05360_consen 5 SWISFGISIVLMLIGLWNAPLDLSEKG 31 (53)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345566666666666653333333333
No 117
>COG3846 TrbL Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]
Probab=20.04 E-value=7.2e+02 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy8209 90 ENTCLLKFYSLCLLIFFLLEM 110 (269)
Q Consensus 90 ~~~~lL~~y~~ll~il~~~~i 110 (269)
...-.|.+|...+.++.+.-.
T Consensus 252 tk~~sLa~~~~~l~Ll~L~n~ 272 (452)
T COG3846 252 TKIISLAIYLASLVLLALFNY 272 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334556667666666655533
Done!