Query psy8209
Match_columns 269
No_of_seqs 216 out of 1349
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 21:26:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 99.7 1.2E-17 4E-22 120.4 3.4 86 117-249 1-89 (90)
2 1rz2_A Conserved hypothetical 24.1 16 0.00055 30.1 0.0 23 24-46 13-35 (254)
3 2klu_A T-cell surface glycopro 19.4 1E+02 0.0035 19.8 3.0 16 70-85 12-27 (70)
4 2gx1_A Neurotoxin MAGI-5; spid 17.7 34 0.0012 17.6 0.4 8 155-162 12-19 (29)
5 1hvw_A Omega-ACTX-HV1A, omega- 16.6 64 0.0022 16.5 1.3 10 184-193 7-16 (26)
6 1ans_A Neurotoxin III; NMR {An 14.0 1.3E+02 0.0046 15.2 2.0 9 231-239 15-23 (27)
7 1rh5_B Preprotein translocase 13.3 1.6E+02 0.0056 19.2 3.0 17 68-84 37-53 (74)
8 1oed_C Acetylcholine receptor 12.9 5.6E+02 0.019 20.9 7.1 23 21-43 3-26 (260)
9 3rhw_A Avermectin-sensitive gl 12.0 6.4E+02 0.022 21.1 8.5 24 19-42 213-237 (347)
10 3rce_A Oligosaccharide transfe 12.0 4.8E+02 0.016 24.9 7.0 9 67-75 383-391 (724)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=99.68 E-value=1.2e-17 Score=120.44 Aligned_cols=86 Identities=13% Similarity=0.292 Sum_probs=65.6
Q ss_pred hhchhhHHHHHHHHHHHHHHhHhC---CChhHHHHHHHHhhcCccccccCCCCCCCcccccCCCCCCCCCCCcccccCcc
Q psy8209 117 FVFPHHIQATLEESFTEKIIHMYR---DDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCI 193 (269)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~y~---~~~~~~~~~d~iQ~~l~CCG~~~~~~~Dw~~~~~~~~~~~~~~~~~vP~SCC~ 193 (269)
|++++++++.+++ .+++.++.|. .+++.+++||.+|++|+|||++ +|+||... .||.|||.
T Consensus 1 fv~~~~v~~~l~~-~l~~~~~~y~~~~~~~~~~~~~d~iQ~~l~CCG~~--~~~Dw~~~-------------~vP~ScC~ 64 (90)
T 1g8q_A 1 FVNKDQIAKDVKQ-FYDQALQQAVVDDDANNAKAVVKTFHETLDCCGSS--TLTALTTS-------------VLKNNLCP 64 (90)
T ss_dssp CCCHHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCSCT--TCGGGHHH-------------HHHTTCSC
T ss_pred CccHHHHHHHHHH-HHHHHHHHhccCCCchhHHHHHHHHHHhhcCCCCC--ChhhhccC-------------CCCCCCCC
Confidence 4688999988844 4457777763 3455788999999999999999 99999641 38999997
Q ss_pred ccccCCCcccccccCCCcccCCcccccCCCccccccCCceeccccHHHHHHHHHHh
Q psy8209 194 NATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERN 249 (269)
Q Consensus 194 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GC~~~l~~~l~~~ 249 (269)
.. ..| ...+|.+||.+++.+|++++
T Consensus 65 ~~---------~~~----------------------~~~~~~~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 65 SG---------SNI----------------------ISNLFKEDCHQKIDDLFSGK 89 (90)
T ss_dssp TT---------CCH----------------------HHHHTSCCHHHHHHHHHHTC
T ss_pred CC---------CCC----------------------cccCccCCcHHHHHHHHHhC
Confidence 21 001 13578999999999999865
No 2
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=24.12 E-value=16 Score=30.15 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHhhhheeEec
Q psy8209 24 LNFIFWLLGALLIAVGLYAFLDK 46 (269)
Q Consensus 24 ~N~l~~l~G~~li~~g~~~~~~~ 46 (269)
++.+++++|++++++++|.+...
T Consensus 13 i~~lli~i~l~~~l~~~~~l~~~ 35 (254)
T 1rz2_A 13 FQRILTVVFLGTFFYSVYELGDI 35 (254)
T ss_dssp ----------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888877644
No 3
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=19.41 E-value=1e+02 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8209 70 VILGAIIFIVSFAGCV 85 (269)
Q Consensus 70 i~~G~~~~~~~~~G~~ 85 (269)
+++|.++-++.+.|.+
T Consensus 12 ivlGg~~~lll~~glc 27 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLG 27 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 6777766666666543
No 4
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=17.72 E-value=34 Score=17.61 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=6.3
Q ss_pred cCcccccc
Q psy8209 155 EFQCCGLS 162 (269)
Q Consensus 155 ~l~CCG~~ 162 (269)
+-+|||.+
T Consensus 12 ~keccgwn 19 (29)
T 2gx1_A 12 KKECCGWN 19 (29)
T ss_dssp TTSBSSCC
T ss_pred Cccccccc
Confidence 45799987
No 5
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=16.59 E-value=64 Score=16.49 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=7.3
Q ss_pred CCcccccCcc
Q psy8209 184 KCGVPFSCCI 193 (269)
Q Consensus 184 ~~~vP~SCC~ 193 (269)
..+.|.+||.
T Consensus 7 ~Cp~~e~CCS 16 (26)
T 1hvw_A 7 PCPYNENCCS 16 (26)
T ss_dssp BCSSTTSBSS
T ss_pred cCCCCccccc
Confidence 3456889997
No 6
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=13.97 E-value=1.3e+02 Score=15.23 Aligned_cols=9 Identities=22% Similarity=0.851 Sum_probs=5.8
Q ss_pred CceeccccH
Q psy8209 231 KKVWTSGCI 239 (269)
Q Consensus 231 ~~i~~~GC~ 239 (269)
..-|.+||.
T Consensus 15 Q~~~~~GCS 23 (27)
T 1ans_A 15 QNCYPEGCS 23 (27)
T ss_dssp CSSCSSCSS
T ss_pred cccccccCc
Confidence 455677875
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.31 E-value=1.6e+02 Score=19.23 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8209 68 VLVILGAIIFIVSFAGC 84 (269)
Q Consensus 68 ~li~~G~~~~~~~~~G~ 84 (269)
+..++|+.++++|++|+
T Consensus 37 iak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666677787774
No 8
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=12.94 E-value=5.6e+02 Score=20.89 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH-hhhhee
Q psy8209 21 IFLLNFIFWLLGALLIA-VGLYAF 43 (269)
Q Consensus 21 l~~~N~l~~l~G~~li~-~g~~~~ 43 (269)
++++|+++=.+.+.++. ++.|+=
T Consensus 3 ~Y~~nliiP~~li~~ls~~~F~Lp 26 (260)
T 1oed_C 3 FYVINFITPCVLISFLASLAFYLP 26 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHHeeeC
Confidence 56778776433333333 355554
No 9
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=12.03 E-value=6.4e+02 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhhhhe
Q psy8209 19 YMIFLLNFIFWLLGALLI-AVGLYA 42 (269)
Q Consensus 19 ~~l~~~N~l~~l~G~~li-~~g~~~ 42 (269)
...+++|+++=.+-+.++ .++.|+
T Consensus 213 ~~~y~~~l~iP~~li~~ls~~sF~l 237 (347)
T 3rhw_A 213 FSFYLLQLYIPSCMLVIVSWVSFWF 237 (347)
T ss_dssp SHHHHHHTHHHHHHHHHHHHTTTTS
T ss_pred eeEEEEEeehhHHHHHHHhheEEec
Confidence 467788877643333333 234444
No 10
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=12.00 E-value=4.8e+02 Score=24.94 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy8209 67 LVLVILGAI 75 (269)
Q Consensus 67 ~~li~~G~~ 75 (269)
.+.+++|.+
T Consensus 383 ~lalg~G~~ 391 (724)
T 3rce_A 383 VMALGFGYF 391 (724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
Done!