RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8209
(269 letters)
>gnl|CDD|239411 cd03158, penumbra_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), penumbra_like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". Human Penumbra exhibits growth-suppressive
activity in vitro and has been associated with myeloid
malignancies.
Length = 119
Score = 177 bits (452), Expect = 6e-57
Identities = 67/134 (50%), Positives = 85/134 (63%), Gaps = 15/134 (11%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFN 176
F+F + LEE+ + I+H Y DD DLQN+IDF Q+EF+CCG + Y DWSKN YFN
Sbjct: 1 FIFSNQTIDLLEENIRKAIVH-YYDDLDLQNIIDFVQKEFKCCGG--DDYRDWSKNMYFN 57
Query: 177 CSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTS 236
CSSP+ E CGVP+SCCI A D ++N MCGYG Q + EASK ++T
Sbjct: 58 CSSPNPEACGVPYSCCIRAKD--QEVINTMCGYGVQNL----------ERLEASKLIYTR 105
Query: 237 GCIEVMRLWAERNL 250
GCI+ + LW E NL
Sbjct: 106 GCIDAVVLWIEDNL 119
>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family.
Length = 221
Score = 143 bits (363), Expect = 3e-42
Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 42/250 (16%)
Query: 16 CVKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAI 75
C+KY++FLLN +F LLG L+AVG++ + + + D I + +++++LG I
Sbjct: 1 CLKYLLFLLNLLFLLLGLALLAVGIWLLVIAKDYLA----IALNDSIRALYILIIVLGVI 56
Query: 76 IFIVSFAGCVGALRENTCLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATLEESFTEKI 135
I +V F GC GA++E+ CLL Y + LLI F+LE+ ++ FV+ ++++L+E K
Sbjct: 57 ILLVGFLGCCGAIKESRCLLLTYFILLLILFILEIAAGILAFVYRDKLESSLKEGLNYKD 116
Query: 136 IHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINA 195
Y DD +L ID Q+ +CCG+ Y DW ++YF+ SS + + ++ +
Sbjct: 117 KS-YNDDPNLTEAIDELQKSLECCGV--NSYTDWLDSQYFSPSSSNPDSDCCCWNNDTSN 173
Query: 196 TDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAERNLYTIAG 255
+I +T GC E + + ++NL I G
Sbjct: 174 LNI-----------------------------------YTEGCKEKLLEFLKKNLKIIGG 198
Query: 256 VALGVALSQV 265
V LG+A+ Q+
Sbjct: 199 VGLGIAVIQL 208
>gnl|CDD|239412 cd03159, TM4SF9_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), TM4SF9_like subfamily.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contaions transmembrane 4
superfamily 9 (TM4SF9) or Tetraspanin-5 and related
proteins. TM4SF9 is strongly expressed witin the central
nervous system, and expression levels appear to
correlate with differentiation status of particular
neurons, hinting at a role in neuronal maturation.
Length = 121
Score = 105 bits (263), Expect = 1e-28
Identities = 56/136 (41%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFN 176
FVF I+ L E I YRDD DLQNLIDF Q+ +QCCG G DW+ N YFN
Sbjct: 1 FVFKDWIKDQLTEFLNNNIRA-YRDDIDLQNLIDFLQEYWQCCGAR--GPDDWNLNIYFN 57
Query: 177 CS--SPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVW 234
C+ +PS E+CGVPFSCC+ D +VN CGY ++ E +
Sbjct: 58 CTDSNPSRERCGVPFSCCVK--DPAEDVVNTQCGYDVRKKPE----------LELQHHIH 105
Query: 235 TSGCIEVMRLWAERNL 250
T GC++ W + NL
Sbjct: 106 TKGCVQAFEKWLQDNL 121
>gnl|CDD|239420 cd03167, oculospanin_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), oculospanin_like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contains sequences similar to
oculospanin, which is found to be expressed in retinal
pigment epithelium, iris, ciliary body, and retinal
ganglion cells.
Length = 120
Score = 95.2 bits (237), Expect = 9e-25
Identities = 54/128 (42%), Positives = 68/128 (53%), Gaps = 14/128 (10%)
Query: 123 IQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSV 182
+Q LE + I H Y+DD DL+ LID Q QCCG SS Y DW +N YFNCSSP V
Sbjct: 7 LQDGLEHTLRLAIAH-YQDDPDLRFLIDQVQLGLQCCGASS--YQDWQQNLYFNCSSPGV 63
Query: 183 EKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTSGCIEVM 242
+ C +P SCCI+ + +VN CG+GA L + A A + V GC +
Sbjct: 64 QACSLPASCCIDPRE-DGAVVNDQCGFGAL---------GLDEDA-AQRVVHLGGCGPPL 112
Query: 243 RLWAERNL 250
R W NL
Sbjct: 113 RRWLRGNL 120
>gnl|CDD|239401 cd03127, tetraspanin_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL). Tetraspanins are
trans-membrane proteins with 4 trans-membrane segments.
Both the N- and C-termini lie on the intracellular side
of the membrane. This alignment model spans the
extracellular domain between the 3rd and 4th
trans-membrane segment. The tetraspanin family contains
CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst
others. Tetraspanins are involved in diverse processes
such as cell activation and proliferation, adhesion and
motility, differentiation, cancer, and others. Their
various functions may relate to their ability to act as
molecular facilitators, grouping specific cell-surface
proteins and affecting formation and stability of
signaling complexes. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web", which may also include integrins.
Length = 90
Score = 62.1 bits (151), Expect = 9e-13
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 44/134 (32%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFN 176
FV+ +++ + ++ + Y D D Q +D Q F+CCG++ G D+
Sbjct: 1 FVYRDQLESLVSDTLNDAWDE-YYVDDDFQEAMDALQSTFECCGVN--GPTDYLDLR--- 54
Query: 177 CSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTS 236
VP SCC ++T
Sbjct: 55 --------LLVPSSCCKG------------------------------TDGNCGLNLYTE 76
Query: 237 GCIEVMRLWAERNL 250
GC+E + + NL
Sbjct: 77 GCLEKLVDFLRSNL 90
>gnl|CDD|239419 cd03166, CD63_LEL, Tetraspanin, extracellular domain or large
extracellular loop (LEL), CD63 family. Tetraspanins are
trans-membrane proteins with 4 trans-membrane segments.
Both the N- and C-termini lie on the intracellular side
of the membrane. This alignment model spans the
extracellular domain between the 3rd and 4th
trans-membrane segment. Tetraspanins are involved in
diverse processes and their various functions may relate
to their ability to act as molecular facilitators.
Tetraspanins associate laterally with one another and
cluster dynamically with numerous parnter domains in
membrane microdomains, forming a network of
multimolecular complexes, the "tetraspanin web". CD63 is
present in platelets, neutrophils, and endothelial
cells, amongst others. In platelets it associates with
the integrin alphaIIBbeta3 and may modulate
alphaIIbbeta3-dependent cytoskeletal reorganization.
Length = 99
Score = 53.2 bits (128), Expect = 3e-09
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 35/134 (26%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFN 176
+VF + + +SF + I + Y D + ++D Q++ +CCG ++ Y DW E
Sbjct: 1 YVFRDKVMSEFNDSFNQMISN-YNKTNDFRKILDRMQKDLKCCGANN--YTDW---ENI- 53
Query: 177 CSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTS 236
PS++ VP SCCIN +T G CG K +
Sbjct: 54 ---PSLDTDSVPDSCCIN---VTKG-----CGINFD-----------------EKVIHLE 85
Query: 237 GCIEVMRLWAERNL 250
GC+ + W ++N+
Sbjct: 86 GCVTKIEGWLKKNI 99
>gnl|CDD|239414 cd03161, TM4SF2_6_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), TM4SF2_6_like subfamily.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contaions transmembrane 4
superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4
superfamily 6 (TM4SF6) or Tspan-6, and related proteins.
TM4SF2 has been identified as involved in some forms of
X-linked mental retardation.
Length = 104
Score = 53.1 bits (128), Expect = 3e-09
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFN 176
FVF H I+ T ++ E + + DD + D Q+ CCG E Y DW + YF
Sbjct: 1 FVFRHEIKGTFLRTYNEAVSNYNGDDERSDAV-DTVQRTLHCCG--VENYTDWLNSPYF- 56
Query: 177 CSSPSVEKCGVPFSCCINATD 197
+ G+P SCC N +D
Sbjct: 57 ------LEKGIPLSCCKNRSD 71
>gnl|CDD|239408 cd03155, CD151_like_LEL, Tetraspanin, extracellular domain or large
extracellular loop (LEL), CD151_Like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". CD151strongly associates with integrins,
especially alpha3beta1, alpha6beta1, alpha7beta1, and
alpha6beta4; it may play roles in cell-cell adhesion,
cell migration, platelet aggregation, and angiogenesis.
For example, CD151 is is involved in regulation of
migration of neutrophils, endothelial cells, and various
tumor cell lines; it associates specifically with
laminin-binding integrins and strengthens alpha6beta1
integrin-mediated adhesion to laminin-1; CD151 also
specifically attenuates adhesion-dependent activation of
Ras and correspdonding downstream effects, and is
involved in epithelial cell-cell adhesion as a modulator
of PKC- and Cdc42-dependent actin cytoskeletal
reorganization.
Length = 110
Score = 51.6 bits (124), Expect = 1e-08
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 123 IQATLEESFTEKIIHMYRDDADLQ--NLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSP 180
++ L+ES + Y + +D QQEF+CCG S Y DW +E+ N +
Sbjct: 7 LEDELKESLKRTMQENYGQSGEEALTLTVDELQQEFKCCG--SNNYTDWQDSEWINSNEA 64
Query: 181 SVEKCGVPFSCCI 193
+ VP SCC
Sbjct: 65 NGRL--VPDSCCK 75
>gnl|CDD|239415 cd03162, peripherin_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), peripherin_like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". Peripherin, or RDS (retinal degradation slow) is a
glycoprotein expressed in vertebrate photoreceptors,
located at the rim of the disc membranes of the
photoreceptor outer segments. RDS is thought to play a
major role in folding and stacking of the discs.
Mutations in RDS have been linked to hereditary retinal
dystrophies, which typically exhibit a wide phenotypic
spectrum.
Length = 143
Score = 48.6 bits (116), Expect = 2e-07
Identities = 42/144 (29%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 124 QATLEESFTEKI---IHMYRDDAD-----LQNLIDFAQQEFQCCGLSSEGYMDWSK---- 171
+ +LEES + + Y+D L+ ID Q EFQCCG + GY DW +
Sbjct: 4 RGSLEESLKTGLKNAMKFYKDTDTPGRCFLKKTIDMLQIEFQCCG--NNGYRDWFEIQWI 61
Query: 172 -NEYFNCSSPSVEKC------------GVPFSCCINATDITSGLVNIMCGYGAQQSSGVL 218
N Y + SS V+ GVPFSCC + +S I Q +
Sbjct: 62 SNRYLDFSSKEVKDRIKSNVDGRYLTDGVPFSCC----NPSSPRPCIQ----HQITDNSA 113
Query: 219 RYGQLPQVAEASKKVWTSGCIEVM 242
Y Q +WT GC E +
Sbjct: 114 HYNYDYQ--TEELNLWTRGCREAL 135
>gnl|CDD|239407 cd03154, TM4SF3_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), TM4SF3_like subfamily.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contaions transmembrane 4
superfamily 3 (TM4SF3) or D6.1a and related proteins.
D6.1a associates with alpha6beta4 integrin and supports
cell motility, it has been ascribed a role in tumor
progression and metastasis.
Length = 100
Score = 47.4 bits (113), Expect = 2e-07
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 114 VIGFVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNE 173
++G V+ I+ L+E T+ + + ++ ++ ++ Q+E +CCGL G DW +
Sbjct: 2 IVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELKCCGL-VNGADDWGNDI 60
Query: 174 YFNCSSPSVEKCGVPFSC 191
+C+ + + V
Sbjct: 61 PASCNCTTTQSDCVVAYY 78
>gnl|CDD|239417 cd03164, CD53_like_LEL, Tetraspanin, extracellular domain or large
extracellular loop (LEL), CD53_Like family. Tetraspanins
are trans-membrane proteins with 4 trans-membrane
segments. Both the N- and C-termini lie on the
intracellular side of the membrane. This alignment model
spans the extracellular domain between the 3rd and 4th
trans-membrane segment. Tetraspanins are involved in
diverse processes and their various functions may relate
to their ability to act as molecular facilitators.
Tetraspanins associate laterally with one another and
cluster dynamically with numerous parnter domains in
membrane microdomains, forming a network of
multimolecular complexes, the "tetraspanin web". CD53 is
a tetraspanin of the lymphoid-myeloid lineage and has
been implicated in apoptosis protection. It associates
with integrin alpha4beta1. Some of the cellular
responses modulated by CD53 may be mediated by JNK
activation and/or via the AKT pathway.
Length = 86
Score = 42.1 bits (99), Expect = 1e-05
Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 52/137 (37%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFN 176
FV+ + ++E T+ + Y D + D Q QCCG++ G DW
Sbjct: 1 FVYEKKLNNYVKEGLTDSL-EQYHKDNNTSEAWDMIQSNLQCCGIN--GTTDWGS----- 52
Query: 177 CSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWTS 236
GVP SCC + T+
Sbjct: 53 ---------GVPSSCCSSDTE-----------------------------------YKVE 68
Query: 237 GCIEVMRLWAERNLYTI 253
GC + ++ W E N
Sbjct: 69 GCYKKLKNWFESNFLYT 85
>gnl|CDD|239418 cd03165, NET-5_like_LEL, Tetraspanin, extracellular domain or large
extracellular loop (LEL), NET-5_like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This sub-family contains proteins similar to human
tetraspan NET-5.
Length = 98
Score = 42.4 bits (100), Expect = 1e-05
Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 38/135 (28%)
Query: 117 FVFPHHIQATLEESFTEKIIHMYRDDAD-LQNLIDFAQQEFQCCGLSSEGYMDWSKNEYF 175
FVF + T ++ E + + L N D Q EF+CCG+++ Y DW E
Sbjct: 1 FVFREKVDLTAKDDLKEGLELYGTRNNRGLTNAWDITQTEFRCCGVTN--YTDW--YEVL 56
Query: 176 NCSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGVLRYGQLPQVAEASKKVWT 235
+ VP SCC + S R ++ W
Sbjct: 57 GENR-------VPDSCCQ------------------EDSQDCGR--------NPTELWWK 83
Query: 236 SGCIEVMRLWAERNL 250
+GC E ++ W NL
Sbjct: 84 TGCYEKVQQWLVDNL 98
>gnl|CDD|239413 cd03160, CD37_CD82_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), CD37_CD82_Like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". CD37 is a leukocyte-specific protein, and its
restricted expression pattern suggests a role in the
immune system. A regulatory role in T-cell proliferation
has been suggested. CD82 is a metastasis suppressor
implicated in biological processes ranging from fusion,
adhesion, and migration to apoptosis and alterations of
cell morphology.
Length = 117
Score = 39.7 bits (93), Expect = 2e-04
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 133 EKIIHMYR---DDADLQNLIDFAQQEFQCCGLSSEGYMDWSKN-EYFNCSSPSVEKCGVP 188
EK+I Y ++ + D+ Q + QCCG G DW+ N N S P P
Sbjct: 17 EKVIQNYGGNPENKTAEEAWDYVQFQLQCCG--WTGPQDWTDNSLIKNSSEPL-----YP 69
Query: 189 FSCCINATDITSGLVNI-MCGYGAQQSSGVLRYG 221
SCC ++ S + C A V + G
Sbjct: 70 CSCCNSSATADSPRPSKGFCEAPASLDWPVYQEG 103
>gnl|CDD|239409 cd03156, uroplakin_I_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), uroplakin_I_like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". Uroplakin Ia and Ib are components of the 16nm
protein particles, which are packed hexagonally to form
2D crystals of asymmetric unit membranes, and cover the
apical surface of mammalian urothelium, contributing to
the urinay bladder's permeability barrier function.
Uroplakins Ia and Ib are maturation facilitators. They
trigger conformational changes in their
single-transmembrane-domain binding partner proteins
uroplakin II and IIIa, which in turn may lead to
ER-exit, stabilization, and cell-surface expression.
Length = 114
Score = 38.3 bits (89), Expect = 7e-04
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 139 YRDDADLQNLIDFAQQEFQCCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCI 193
+ + + E +CCG++ G D+ + F P SCC
Sbjct: 25 NSTGDAITSTWNRVMIELKCCGVN--GPTDFVDSTSFFRQKNE-PNSPYPESCCK 76
>gnl|CDD|239416 cd03163, TM4SF8_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), TM4SF8_like subfamily.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contaions transmembrane 4
superfamily 8 (TM4SF8) or Tspan-3 and related proteins.
Tspan-3 has been reported to form a complex with
integrin beta1 and OSP/claudin-11, which may be involved
in oligodendrocyte proliferation and migration.
Length = 105
Score = 37.4 bits (87), Expect = 0.001
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 116 GFVFPHHIQATLEESFTEKIIHMYRDDADLQNL-IDFAQQEFQCCGLSSEGYMDWSKNEY 174
G+V+ ++ L S + + + + ++ +D+ Q++ QCCG+ + Y DW +
Sbjct: 1 GYVYRAKVEDELNPSIDK--VFNKYNGTNAESRAVDYLQRQLQCCGIHN--YTDWENTPW 56
Query: 175 FNCSSPSVEKCGVPFSCC-INATDITSGLVNIM 206
F + VP SCC T T L
Sbjct: 57 FK----ESKNNSVPLSCCKETFTSCTGSLTQPK 85
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 34.6 bits (79), Expect = 0.040
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 27/95 (28%)
Query: 20 MIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIV 79
++ LL +FWL Y + W LL V+ + AL+L+I+ IIFI
Sbjct: 30 LLLLLALLFWL----------YIVMSDWTGGALL-------VLYSFALILIIIILIIFIF 72
Query: 80 SFAGCVGALRENTCLLKFYSLCLLIFFLLEMLVAV 114
R+ C L +LCLL+ + +L+A+
Sbjct: 73 R--------RDLLCPLG--ALCLLLLMITLLLIAL 97
>gnl|CDD|220864 pfam10724, DUF2516, Protein of unknown function (DUF2516). This
family is conserved in Actinobacteria. The function is
not known.
Length = 99
Score = 31.1 bits (71), Expect = 0.14
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 19 YMIFLLNFIFWLLGALLIAVGLYAFL-------DKWEASGLLKLETVYDVILNIA-LVLV 70
+ + I +LG + VG+YA + D + A+ L + + IL +A LVL+
Sbjct: 2 ILAGVTGGIMLILGLAALVVGVYALVHAARTRADAFTAADKLT-KPFWLAILGVAVLVLL 60
Query: 71 ILGAIIFIVSFAGCVGAL 88
+LG + ++ V A
Sbjct: 61 LLGGSLGLLGIIAVVAAG 78
>gnl|CDD|222964 PHA03042, PHA03042, CD47-like protein; Provisional.
Length = 286
Score = 31.6 bits (72), Expect = 0.35
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 18 KYMI-FLLNFIF-WLLGALLIAVGLYA--FLDKWEASGLLKLETVYDVILNIAL--VLVI 71
+YMI N+IF + G +LI V +++ FL K++ Y +I+ I L + I
Sbjct: 163 QYMIGLNTNYIFVKIQGIILIQVSIFSSIFLQIIL---YKKIKNSYLLIIVIILKVISYI 219
Query: 72 LGAIIFIVSFAGCVGALRENTCLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATLEESF 131
+ I+ I+SF GC N+ + LL +LE+ VI F+ P L +
Sbjct: 220 ISFIVIILSFIGCY-----NSIYGYLFIYKLLFINILELSSLVILFILP------LGTNI 268
Query: 132 TEKIIHMYRDDADL 145
K +H+ D+ L
Sbjct: 269 KYKKLHIIEDELFL 282
>gnl|CDD|201483 pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family
are integral membrane proteins. Some are involved in
drug resistance. AcrB cooperates with a membrane fusion
protein, AcrA, and an outer membrane channel TolC. The
structure shows the AcrB forms a homotrimer.
Length = 1021
Score = 31.9 bits (73), Expect = 0.38
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 30 LLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSF 81
L +L+ + ++ FL + A+ +I IA+ L +LG + +F
Sbjct: 338 LEAIVLVILVMFLFLQNFRAT----------LIPAIAVPLSLLGTFAVMKAF 379
>gnl|CDD|224539 COG1624, COG1624, Uncharacterized conserved protein [Function
unknown].
Length = 247
Score = 30.7 bits (70), Expect = 0.55
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 17 VKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAII 76
V +++ L I A+ + G+ +F+ E S +L L T+ ++ + VI +I
Sbjct: 23 VSVLLYKLIKIISGTRAVQLLKGILSFIILVELSDILGLTTLLWLLNAALTIGVIALVVI 82
Query: 77 F 77
F
Sbjct: 83 F 83
>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain
contains four transmembrane alpha helices. The domain is
characterized by the motifs DLYGP and GY. The Yip1
protein is a golgi protein involved in vesicular
transport that interacts with GTPases.
Length = 171
Score = 30.5 bits (69), Expect = 0.61
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 21 IFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVS 80
+ LL + LL ALL+ L + +G L ++ L + L L +L ++ +++
Sbjct: 28 LALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGLFLLALLLHLIA 87
Query: 81 -FAGCVGALRENTCLLKFYSLCLLIFFLLEMLVAVIGFVFPHHI 123
G G+ ++ L LL L ++ ++ + +
Sbjct: 88 KLFGGDGSFKQ---TLSLVGYALLPLILGGLIALLLSLLLGALL 128
>gnl|CDD|217187 pfam02687, FtsX, FtsX-like permease family. This is a family of
predicted permeases and hypothetical transmembrane
proteins. Buchnera aphidicola lolC has been shown to
transport lipids targeted to the outer membrane across
the inner membrane. Both lolC and Streptococcus
cristatus tptD have been shown to require ATP. This
region contains three transmembrane helices.
Length = 121
Score = 29.1 bits (66), Expect = 0.88
Identities = 13/70 (18%), Positives = 30/70 (42%)
Query: 20 MIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIV 79
++ L + L+G+LL + + ++ L + ++ ++L+ L I+ I
Sbjct: 46 LLLLEALLLGLIGSLLGLLLGFLLAYLLSSAIASFLGFSLPLSIDPIVILLSLLLILLIA 105
Query: 80 SFAGCVGALR 89
A + A R
Sbjct: 106 LLASLLPARR 115
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase. The members
of this family are membrane proteins. In some proteins
this region is found associated with pfam02225. This
family corresponds with Merops subfamily A22B, the type
example of which is signal peptide peptidase. There is a
sequence-similarity relationship with pfam01080.
Length = 291
Score = 29.6 bits (67), Expect = 1.4
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 27 IFWLLGALLIAVGLYAFLDKWEASGLLKLE--TVYDVILN-IALVLVILGAIIFIVSFAG 83
I + + A +GLY F + + T Y IL IAL +IL I +SF G
Sbjct: 15 IIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLILPPCIRRLSFMG 74
Query: 84 CVGALREN---TCLLKFYSLCLLIFFLLEMLVAVIGFVF 119
++ ++ L+ LL ++ AV +V
Sbjct: 75 AYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVL 113
>gnl|CDD|221039 pfam11234, DUF3036, Protein of unknown function (DUF3036). Some
members in this family of proteins are annotated as
yoaS. Currently no function is known.
Length = 155
Score = 28.4 bits (64), Expect = 2.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 18 KYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIF 77
K L + L+G ++A+ ++ A+ +L +L L+ V LGAI F
Sbjct: 2 KRSTLFLKIVIVLIGIPVLALCIFLVP--LLANDTAELGPEIAYLLYPVLLGVYLGAIPF 59
Query: 78 IVS 80
V+
Sbjct: 60 YVA 62
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 29.3 bits (66), Expect = 2.7
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 22 FLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSF 81
F N + L+ ALLI + L + LL D I ++L +++L ++ I+SF
Sbjct: 213 FSKNCTYLLISALLILLLSSFLLFIKGYTYLL-----KDYIFMLSLSVLLLLLLLLIISF 267
Query: 82 AGCVGALREN-----------------TCLLKFYSLCLLIFFLLEML 111
+ + + + K L L+I L+ +L
Sbjct: 268 LTLLLLSKMSLANSIKGKSSFKFLLIINYVCKLVLLVLVIATLITIL 314
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 29.2 bits (66), Expect = 2.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 21 IFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAI 75
FL F + LL+A L AF+ W +G+ VIL + ++ +LG +
Sbjct: 73 KFLRQFKDPFIILLLVAALLSAFVGDWVDAGVD-----AIVILLVVVINALLGFV 122
>gnl|CDD|183613 PRK12592, PRK12592, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 126
Score = 27.5 bits (61), Expect = 4.4
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 23 LLNFIFWLLGALLI---AVGLYAFLDKW-EASGLLKLETVYDVILNIALVLVILGAIIFI 78
+++ +F L GA L ++GL F D + K +T L+L ++GAII +
Sbjct: 9 IVSLVFILSGAFLSFSASIGLIRFRDTMSRVHAITKPQTT-------GLILTVVGAIIRV 61
Query: 79 VSFAGCVGALRENTCLLKFYSLCLLIFFLL 108
+ + R + + L LL+ F L
Sbjct: 62 LGHEDFDQSQRGDLGV-----LVLLVLFAL 86
>gnl|CDD|184006 PRK13367, PRK13367, protocatechuate 4,5-dioxygenase; Provisional.
Length = 420
Score = 28.2 bits (63), Expect = 4.5
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 104 IFFLLEMLVAVIGFVFPHHIQA----TLEE 129
FFLLE L AV+G H A TLE
Sbjct: 372 SFFLLEKLGAVVGVSNLHIYAAMRGQTLEA 401
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 28.7 bits (64), Expect = 4.5
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 123 IQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQC-CG 160
I+AT E EK+I + + NL F++QEF+C CG
Sbjct: 1510 IRATDERDVAEKVIQSHFVPDLIGNLRAFSRQEFRCKCG 1548
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 28.4 bits (64), Expect = 4.7
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 61 VILNIALVLVILGAIIFIV--SFAGCVGALRE-----NTCLLKFYSLCLLIFFLLEMLVA 113
VI + ++L+ + + F C G +++ + C +CLL+ +L +
Sbjct: 99 VIGVLFILLMPIVGLCFCCCRCCGNCGGRMQQKDKKNDPCKRSCLGVCLLLTTVLLLFGV 158
Query: 114 VIGFVFPHHIQATLEESFTE 133
V FV + Q ++ S T
Sbjct: 159 VCAFVTNQYTQTGVKNSPTT 178
>gnl|CDD|226338 COG3817, COG3817, Predicted membrane protein [Function unknown].
Length = 313
Score = 28.2 bits (63), Expect = 4.9
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 20 MIFLLNFIFWLLGALLIAVGLYAFLDK 46
+ L ++ L+G + + +F DK
Sbjct: 1 AMISLELLYILIGIQFLHTAVLSFKDK 27
>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin
reductase (FNR) proteins combine the FAD and NAD(P)
binding regions of FNR with an iron-sulfur binding
cluster domain. Ferredoxin-NADP+ (oxido)reductase is an
FAD-containing enzyme that catalyzes the reversible
electron transfer between NADP(H) and electron carrier
proteins such as ferredoxin and flavodoxin. Isoforms of
these flavoproteins (i.e. having a non-covalently bound
FAD as a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal portion of the FAD/NAD binding domain
contains most of the NADP(H) binding residues and the
N-terminal sub-domain interacts non-covalently with the
isoalloxazine rings of the flavin molecule which lies
largely in a large gap betweed the two domains. In this
ferredoxin like sub-group, the FAD/NAD sub-domains is
typically fused to a C-terminal iron-sulfur binding
domain. Iron-sulfur proteins play an important role in
electron transfer processes and in various enzymatic
reactions. The family includes plant and algal
ferredoxins which act as electron carriers in
photosynthesis and ferredoxins which participate in
redox chains from bacteria to mammals. Ferredoxin
reductase first accepts one electron from reduced
ferredoxin to form a flavin semiquinone intermediate.
The enzyme then accepts a second electron to form FADH2
which then transfers two electrons and a proton to NADP+
to form NADPH.
Length = 231
Score = 27.9 bits (63), Expect = 5.3
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 145 LQNLI-DFAQQEFQCCGLSSEGYMDWSKN 172
L L+ D ++ CG G+M K+
Sbjct: 188 LALLVPDLKERTVFVCG--PAGFMKAVKS 214
>gnl|CDD|179648 PRK03776, PRK03776, phosphoglycerol transferase I; Provisional.
Length = 762
Score = 28.1 bits (63), Expect = 6.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 215 SGVLRYGQLPQVAEASKKVWTSGCIEVMRLWAE 247
S LR+ QL A VW C ++ +LWA
Sbjct: 532 SAPLRF-QLADFAPRDNFVWVDRCYKMAQLWAP 563
>gnl|CDD|220473 pfam09925, DUF2157, Predicted membrane protein (DUF2157). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 144
Score = 26.8 bits (60), Expect = 6.8
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Query: 27 IFWLLGALLIAVGLYAFLD-KWEA-SGLLKLETVYDVILNIALVLVILGAIIFIVSFAGC 84
I LGALL+ G+ F+ WE +K +L A++ ++ G
Sbjct: 34 ILLWLGALLLGAGVIFFVAANWEEIPRFVK--------------FGLLLALLVGLALGGF 79
Query: 85 VGALRENTCLLKFYSLCLLIFFLLEMLVAVIGFVFPHHIQATLEESF 131
R L + +L LL L L+A+IG ++ A + F
Sbjct: 80 WLWRRGKPRLGE--ALLLLGALLFGALLALIGQIY--QTGADPWQLF 122
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella
[Cellular processes, Chemotaxis and motility].
Length = 347
Score = 27.6 bits (62), Expect = 7.9
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 21 IFLLNFIFWLLGALLIA---VGLYAFLDKWEASGLLKLETVYDVILNIAL-VLVILGAII 76
+ L + L +A V L +F +E S +L L ++ + VL++L I
Sbjct: 31 VLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIREVLLLLLPIF 90
Query: 77 FIVSFAGCVGALRENTCLLKFYSL 100
++ G + + + L L
Sbjct: 91 VLLLVVGVLSNIAQFGFLFTTKPL 114
>gnl|CDD|236520 PRK09444, pntB, pyridine nucleotide transhydrogenase; Provisional.
Length = 462
Score = 27.4 bits (61), Expect = 9.3
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 38 VGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCV---GALR 89
VGL A L + S L + V++NI L V LG I V+F G + G LR
Sbjct: 94 VGLAAVLVGFN-SYLDHDAGMAPVLVNIHLTEVFLGIFIGAVTFTGSIVAFGKLR 147
>gnl|CDD|148909 pfam07556, DUF1538, Protein of unknown function (DUF1538). This
family contains several conserved glycines and
phenylalanines.
Length = 212
Score = 27.0 bits (61), Expect = 9.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 25 NFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGC 84
N I L+G LL+ +GL FL E GL + I L G++ ++ F
Sbjct: 19 NLIRILVGLLLVILGLALFLVGLEI-GLFPIGE------AIGSALAKKGSLWLLLLFGFL 71
Query: 85 VGAL 88
+G
Sbjct: 72 LGFA 75
>gnl|CDD|236257 PRK08388, PRK08388, putative monovalent cation/H+ antiporter
subunit C; Reviewed.
Length = 119
Score = 26.4 bits (58), Expect = 9.9
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 29 WLLGALLIAVGLYAFLDKWEASGLLKLETVYDVI-LNIALVLVILG 73
++ L+IA+G+YAFL K L+KL D+I I L+L+ LG
Sbjct: 6 FITAFLMIALGIYAFLYK---RNLIKLILALDLIDSGIHLLLISLG 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.448
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,784,775
Number of extensions: 1334112
Number of successful extensions: 3303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3178
Number of HSP's successfully gapped: 317
Length of query: 269
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 174
Effective length of database: 6,723,972
Effective search space: 1169971128
Effective search space used: 1169971128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.1 bits)