RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8209
         (269 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.25
 Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 33/128 (25%)

Query: 37   AVG----LY----AFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAGCVG-A 87
              G    LY    A  D W  +     +T    IL+I    VI   +   + F G  G  
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI----VINNPVNLTIHFGGEKGKR 1683

Query: 88   LRENTCLLKFYSLCLLIFFLLEMLVAVI--GFVFPHHIQATLEESFTEKIIHMYRDDADL 145
            +REN      YS          M+   I  G +    I   + E  T    + +R +  L
Sbjct: 1684 IREN------YS---------AMIFETIVDGKLKTEKIFKEINEHSTS---YTFRSEKGL 1725

Query: 146  QNLIDFAQ 153
             +   F Q
Sbjct: 1726 LSATQFTQ 1733



 Score = 26.9 bits (59), Expect = 9.3
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 48/124 (38%)

Query: 33   ALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILGAIIFIVSFAG-CVG---AL 88
            AL   +   A  +  ++ GL+  +                        FAG  +G   AL
Sbjct: 1735 ALT-LME-KAAFEDLKSKGLIPADAT----------------------FAGHSLGEYAAL 1770

Query: 89   RENTCL---LKFYSLCLLIFF---LLEMLV----------AVIGFVFPHHIQATLEESFT 132
                 L   +   SL  ++F+    +++ V           +I  + P  + A+  +   
Sbjct: 1771 ---ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAASFSQEAL 1826

Query: 133  EKII 136
            + ++
Sbjct: 1827 QYVV 1830


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.2 bits (62), Expect = 2.1
 Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 9/29 (31%)

Query: 221 GQLPQVAEASKKVWTSGCIEVMRLWAERN 249
            Q  ++ +           E +R W E  
Sbjct: 75  AQADRLTQEP---------ESIRKWREEQ 94


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
           binding, haloacid dehydrogenease superfamily, phosphate
           analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
           PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
           1mo8_A* 1q3i_A
          Length = 1028

 Score = 28.0 bits (63), Expect = 4.4
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 19  YMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVIL 72
           ++ F     F     LL    +  FL     +         ++ L + L  V++
Sbjct: 94  WIKFCRQL-FGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVI 146


>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
           protein, transport protein; HET: BOG; 1.65A {Aquifex
           aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
           2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
           3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
           3uso_A 3usp_A* 3qs5_A* ...
          Length = 519

 Score = 27.0 bits (60), Expect = 8.6
 Identities = 14/106 (13%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 20  MIFLLNFIFWLLGALLIAV------GLYAFLDKWEASGLLKLETVYDVILNIALVLVILG 73
           M F    I  +   L   +      G     ++    G++K+  +Y  ++       +  
Sbjct: 403 MDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLA- 461

Query: 74  AIIFIVSFAGCVGALRENTCLLKFYSLCLLIFFLLEMLVAVIGFVF 119
            ++ +V     +  + E T     +++ +  F+++ + + +   VF
Sbjct: 462 -VLLVVWAREYIPKIMEET----HWTVWITRFYIIGLFLFLTFLVF 502


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 26.9 bits (60), Expect = 9.6
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 16/63 (25%)

Query: 14  SPCVKYMIFLLNFIFWLLGALLIAVGLYAFLDKWEASGLLKLETVYDVILNIALVLVILG 73
           +  +K++ F +  I +++     A  L A L+ W   G         VI      L++L 
Sbjct: 111 NHFLKFLGFFVGPIQFVM---EGAAVLAAGLEDWVDFG---------VI----CGLLLLN 154

Query: 74  AII 76
           A++
Sbjct: 155 AVV 157


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,152,066
Number of extensions: 240024
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 17
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.3 bits)