RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8209
         (269 letters)



>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
           {Synechococcus sp. strain PCC 7942 (Anacystis nidulans
           R2) [TaxId: 1140]}
          Length = 242

 Score = 28.8 bits (63), Expect = 0.59
 Identities = 13/65 (20%), Positives = 21/65 (32%)

Query: 106 FLLEMLVAVIGFVFPHHIQATLEESFTEKIIHMYRDDADLQNLIDFAQQEFQCCGLSSEG 165
           F ++ L   I       +  T EE+  + I +      DL  L+D  +          EG
Sbjct: 42  FSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 101

Query: 166 YMDWS 170
                
Sbjct: 102 QEVVG 106


>d1eb6a_ d.92.1.12 (A:) Fungal zinc peptidase {Aspergillus oryzae,
           deuterolysin [TaxId: 5062]}
          Length = 177

 Score = 28.0 bits (62), Expect = 0.99
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 19/108 (17%)

Query: 158 CCGLSSEGYMDWSKNEYFNCSSPSVEKCGVPFSCCINATDITSGLVNIMCGYGAQQSSGV 217
            C  +   Y   SKNE  NC           +   +             C    Q ++ +
Sbjct: 84  YCEPNVLAYTLPSKNEIANCDI---------YYSELPPLAQ-------KCHAQDQATTTL 127

Query: 218 LRYGQLPQVAEASKKVWTSGCIEVMRL---WAERNLYTIAGVALGVAL 262
             +   P V +   +    G     +L    A  N  + A  A  + L
Sbjct: 128 HEFTHAPGVYQPGTEDLGYGYDAATQLSAQDALNNADSYALYANAIEL 175


>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus
           type 2 [TaxId: 11060]}
          Length = 136

 Score = 25.5 bits (56), Expect = 4.0
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 138 MYRDDADLQNLIDFAQ 153
           +Y D   L+   +FA 
Sbjct: 118 IYSDPLALKEFKEFAA 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,015,995
Number of extensions: 45775
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 16
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.3 bits)