BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8216
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 19 IYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRP---WRHVLENESGVSNFGLDKEGL 75
++DQ FG DL FPT S L Y+RP R ++G+S L+K+
Sbjct: 23 LFDQFFGEHLLESDL---FPT----STSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRF 75
Query: 76 KVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIAS 135
VNLDV+ F PEE H KHEER D+HGFISREF R+YRIP VD I S
Sbjct: 76 SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 135
Query: 136 KLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNKN 177
LSSDG+L++ P+K ER+IP+ + +PAV K
Sbjct: 136 SLSSDGVLTVNGPRKQV--SGPERTIPITREEKPAVTAAPKK 175
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 70 LDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVD 129
L+K+ VNLDV+ F PEE H KHEER D+HGFISREF R+YRIP VD
Sbjct: 4 LEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 63
Query: 130 AQAIASKLSSDGILSIQAPKKATKEGAGERSIPV 163
I S LSSDG+L++ P+K ER+IP+
Sbjct: 64 PLTITSSLSSDGVLTVNGPRKQV--SGPERTIPI 95
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 64 GVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYR 123
GVS D+E V LDV+ F P+E KH ER D HG+ISREF RRYR
Sbjct: 1 GVSEVRSDREKFTVYLDVKHFSPDELSVKVTDDYVEIQGKHGERQDDHGYISREFHRRYR 60
Query: 124 IPDSVDAQAIASKLSSDGILSIQAPKKA-TKEGAGERSIPVVQTNQ 168
+P +VD AI LS+DG+L++ PK + G G+R+IPV + ++
Sbjct: 61 LPSNVDQSAITCTLSADGLLTLCGPKTSGIDAGRGDRTIPVTREDK 106
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 53/87 (60%)
Query: 64 GVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYR 123
G L+K+ VNLDV+ F PEE H KHEER D+HGFISREF R+YR
Sbjct: 1 GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR 60
Query: 124 IPDSVDAQAIASKLSSDGILSIQAPKK 150
IP VD I S LSSDG+L++ P+K
Sbjct: 61 IPADVDPLTITSSLSSDGVLTVNGPRK 87
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 63 SGVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRY 122
SG+S D++ + LDV+ F PE+ H KH ER D HG+ISREF RRY
Sbjct: 2 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRY 61
Query: 123 RIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAG--ERSIPV 163
R+P +VD A++ LS+DG+L+ PK + AG ER+IPV
Sbjct: 62 RLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPV 104
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 52/87 (59%)
Query: 64 GVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYR 123
G L+K+ VNLDV+ F PEE H KHEER D+HGFISREF R+YR
Sbjct: 1 GAXEXRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR 60
Query: 124 IPDSVDAQAIASKLSSDGILSIQAPKK 150
IP VD I S SSDG+L++ P+K
Sbjct: 61 IPADVDPLTITSSXSSDGVLTVNGPRK 87
>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g
pdb|2Y1Z|B Chain B, Human Alphab Crystallin Acd R120g
Length = 94
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 52/87 (59%)
Query: 64 GVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYR 123
G L+K+ VNLDV+ F PEE H KHEER D+HGFISREF +YR
Sbjct: 1 GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYR 60
Query: 124 IPDSVDAQAIASKLSSDGILSIQAPKK 150
IP VD I S +SSDG+L++ P+K
Sbjct: 61 IPADVDPLTITSSMSSDGVLTVNGPRK 87
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 50/80 (62%)
Query: 71 DKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVDA 130
+K+ VNLDV+ F PEE H KHEER D+HGFISREF R+YRIP VD
Sbjct: 4 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDP 63
Query: 131 QAIASKLSSDGILSIQAPKK 150
I S SSDG+L++ P+K
Sbjct: 64 LTITSSXSSDGVLTVNGPRK 83
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 71 DKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVDA 130
D++ + LDV+ F PE+ H KH ER D HG+ISREF RRYR+P +VD
Sbjct: 7 DRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQ 66
Query: 131 QAIASKLSSDGILSIQAPKKATKEGAG--ERSIPV 163
A++ LS+DG+L+ PK + AG ER+IPV
Sbjct: 67 SALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPV 101
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 50/84 (59%)
Query: 64 GVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYR 123
++ D V LDV+ F PEE HA+HEER D+HGFI+REF RRYR
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYR 61
Query: 124 IPDSVDAQAIASKLSSDGILSIQA 147
+P VD A+ S LS +G+LSIQA
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQA 85
>pdb|3Q9P|A Chain A, Hspb1 Fragment
pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
Length = 85
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 76 KVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIAS 135
+V+LDV F P+E KH R D+HG+ISR FTR+Y +P VD ++S
Sbjct: 10 RVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSS 69
Query: 136 KLSSDGILSIQAP 148
LS +G L+++AP
Sbjct: 70 SLSPEGTLTVEAP 82
>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
Length = 314
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 75 LKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIA 134
KV +V+ FK EE A+ +S R +P SVD I
Sbjct: 114 FKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAA-MSESVGRSIPLPPSVDRNHIQ 172
Query: 135 SKLSSDGILSIQAP-----KKATKEGAGERSIPV----VQTNQPAVKQGNKNGGKAASGE 185
+ +++D +L I+AP KA K + E+ + + VQ Q AVK NK G + + E
Sbjct: 173 ATITTDDVLVIEAPVNEPNYKAIK-LSPEKGLAIQPSEVQERQLAVK--NKEGLEIVTAE 229
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 118 FTRRYRIPDSVDAQAIASKLSSDGILSIQAPKK 150
F RR+ +PDS DA I + +G+L I+ PK+
Sbjct: 66 FHRRFALPDSADADGITAA-GRNGVLEIRIPKR 97
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 118 FTRRYRIPDSVDAQAIASKLSSDGILSIQAPKK 150
F RR+ +PDS DA I + +G+L I+ PK+
Sbjct: 69 FHRRFALPDSADADGITAA-GRNGVLEIRIPKR 100
>pdb|2FBL|A Chain A, The Crystal Structure Of The Hypothetical Protein Ne1496
pdb|2FBL|B Chain B, The Crystal Structure Of The Hypothetical Protein Ne1496
Length = 153
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 33 LLQHFPTPRILSVPLRSGYVRPWRHVLE---NESGVSNF-------GLDKEGLKVNLDVQ 82
L+ FP + +VPLR GY+ +E + G F GL ++ ++ +DV
Sbjct: 11 LVATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGGLSRQEYEIQIDVT 70
Query: 83 QFK 85
QF+
Sbjct: 71 QFE 73
>pdb|3TYP|A Chain A, The Crystal Structure Of The Inorganic Triphosphatase
Ne1496
pdb|3TYP|B Chain B, The Crystal Structure Of The Inorganic Triphosphatase
Ne1496
Length = 155
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 33 LLQHFPTPRILSVPLRSGYVRPWRHVLE---NESGVSNF-------GLDKEGLKVNLDVQ 82
L+ FP + +VPLR GY+ +E + G F GL ++ ++ +DV
Sbjct: 12 LVATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGGLSRQEYEIQIDVT 71
Query: 83 QFK 85
QF+
Sbjct: 72 QFE 74
>pdb|2IQI|A Chain A, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|B Chain B, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|C Chain C, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|D Chain D, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|E Chain E, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|F Chain F, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|G Chain G, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
pdb|2IQI|H Chain H, Crystal Structure Of Protein Xcc0632 From Xanthomonas
Campestris, Pfam Duf330
Length = 192
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 38 PTPRILSVPLRSGYVRPWRHVLENE-----------SGVSNFGLD-KEGLKVNLDVQQFK 85
PTP L V +G+ +P +LE+ + V+ G + K+ +DV++F+
Sbjct: 52 PTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFE 111
Query: 86 PEEXXXXXXXXXXXXHAKHEERSDQHGFISREFT 119
+ +AK SDQ SR FT
Sbjct: 112 SDYAGQSLPAATIELNAKLLHSSDQRVVASRTFT 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,594,019
Number of Sequences: 62578
Number of extensions: 215267
Number of successful extensions: 335
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 19
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)