Query psy8216
Match_columns 189
No_of_seqs 194 out of 1335
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:37:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3591|consensus 100.0 5.5E-29 1.2E-33 198.0 15.7 150 18-173 20-171 (173)
2 cd06497 ACD_alphaA-crystallin_ 99.9 7.7E-26 1.7E-30 161.0 11.3 84 66-149 3-86 (86)
3 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 3.2E-25 6.9E-30 156.8 11.3 83 67-149 1-83 (83)
4 cd06498 ACD_alphaB-crystallin_ 99.9 3.3E-25 7.2E-30 157.1 11.2 83 68-150 2-84 (84)
5 cd06476 ACD_HspB2_like Alpha c 99.9 5.4E-25 1.2E-29 155.7 11.2 82 68-149 2-83 (83)
6 cd06475 ACD_HspB1_like Alpha c 99.9 1.1E-23 2.5E-28 149.8 10.9 84 65-148 2-85 (86)
7 cd06480 ACD_HspB8_like Alpha-c 99.9 1.1E-23 2.4E-28 151.2 10.6 84 66-149 8-91 (91)
8 cd06477 ACD_HspB3_Like Alpha c 99.9 1.7E-23 3.7E-28 148.0 10.8 80 69-148 3-82 (83)
9 PF00011 HSP20: Hsp20/alpha cr 99.9 1.1E-22 2.4E-27 147.9 14.1 97 67-164 1-102 (102)
10 cd06479 ACD_HspB7_like Alpha c 99.9 2.5E-23 5.4E-28 146.5 9.7 80 67-149 2-81 (81)
11 PRK10743 heat shock protein Ib 99.9 5.2E-23 1.1E-27 158.2 12.3 97 64-164 35-137 (137)
12 PRK11597 heat shock chaperone 99.9 6E-23 1.3E-27 158.6 12.6 98 64-165 33-136 (142)
13 COG0071 IbpA Molecular chapero 99.9 1.8E-22 3.8E-27 156.6 12.7 100 63-164 40-146 (146)
14 cd06481 ACD_HspB9_like Alpha c 99.9 5.5E-22 1.2E-26 141.4 10.2 81 69-149 3-87 (87)
15 cd06526 metazoan_ACD Alpha-cry 99.9 1.3E-21 2.8E-26 138.0 10.3 78 72-149 6-83 (83)
16 cd06472 ACD_ScHsp26_like Alpha 99.9 2E-21 4.3E-26 139.5 10.1 84 65-149 1-92 (92)
17 cd06482 ACD_HspB10 Alpha cryst 99.9 5.9E-21 1.3E-25 136.1 10.3 81 69-149 4-87 (87)
18 cd06471 ACD_LpsHSP_like Group 99.8 1.4E-20 3E-25 135.1 9.9 83 65-149 2-93 (93)
19 cd06470 ACD_IbpA-B_like Alpha- 99.8 8.4E-20 1.8E-24 130.8 11.0 83 64-149 1-90 (90)
20 cd06464 ACD_sHsps-like Alpha-c 99.8 6E-19 1.3E-23 123.7 9.5 82 67-149 1-88 (88)
21 cd00298 ACD_sHsps_p23-like Thi 99.5 5.5E-14 1.2E-18 95.0 9.6 80 68-149 1-80 (80)
22 KOG0710|consensus 99.5 2.3E-14 5.1E-19 116.3 6.7 99 64-163 85-194 (196)
23 cd06469 p23_DYX1C1_like p23_li 99.2 6.6E-11 1.4E-15 81.6 8.4 70 69-152 2-71 (78)
24 PF05455 GvpH: GvpH; InterPro 98.9 1.1E-08 2.4E-13 81.4 9.6 78 62-153 90-171 (177)
25 cd06463 p23_like Proteins cont 98.9 1.7E-08 3.7E-13 69.3 8.1 75 69-152 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.6 3.1E-07 6.7E-12 63.8 7.6 77 67-152 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.1 8.3E-05 1.8E-09 50.3 10.8 76 65-149 2-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 97.8 0.00027 5.8E-09 51.7 9.8 77 65-151 2-78 (108)
29 PF00525 Crystallin: Alpha cry 97.7 5.2E-06 1.1E-10 54.4 -0.8 34 5-38 8-42 (59)
30 cd06489 p23_CS_hSgt1_like p23_ 97.7 0.00038 8.3E-09 48.5 8.5 76 67-151 1-76 (84)
31 PF08190 PIH1: pre-RNA process 97.7 0.00023 5E-09 61.3 8.6 68 71-149 259-328 (328)
32 cd06467 p23_NUDC_like p23_like 97.4 0.0012 2.7E-08 45.7 7.9 74 67-152 2-77 (85)
33 cd06488 p23_melusin_like p23_l 97.2 0.004 8.7E-08 43.8 9.1 78 66-152 3-80 (87)
34 cd06468 p23_CacyBP p23_like do 97.2 0.0053 1.1E-07 43.3 9.1 78 66-152 4-85 (92)
35 cd06493 p23_NUDCD1_like p23_NU 97.1 0.0066 1.4E-07 42.5 8.6 74 67-152 2-77 (85)
36 cd00237 p23 p23 binds heat sho 96.4 0.078 1.7E-06 38.9 10.4 78 64-152 2-79 (106)
37 cd06494 p23_NUDCD2_like p23-li 96.3 0.051 1.1E-06 39.0 9.1 75 64-151 6-82 (93)
38 PLN03088 SGT1, suppressor of 95.1 0.12 2.7E-06 45.4 8.3 80 64-152 157-236 (356)
39 cd06490 p23_NCB5OR p23_like do 95.0 0.46 1E-05 33.3 9.6 76 67-152 2-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 94.0 0.5 1.1E-05 33.3 7.9 71 69-151 4-78 (87)
41 KOG1309|consensus 90.6 1 2.2E-05 36.3 6.4 79 64-151 4-82 (196)
42 cd06495 p23_NUDCD3_like p23-li 90.5 3.7 7.9E-05 29.9 8.8 77 66-151 7-86 (102)
43 KOG3158|consensus 80.6 7.4 0.00016 31.2 6.5 80 63-153 7-86 (180)
44 PF13349 DUF4097: Domain of un 80.2 19 0.00041 27.2 8.8 79 64-147 66-148 (166)
45 cd06482 ACD_HspB10 Alpha cryst 76.6 4 8.7E-05 28.8 3.6 35 117-153 9-43 (87)
46 PF14913 DPCD: DPCD protein fa 72.3 33 0.00072 27.9 8.2 76 63-151 86-170 (194)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 70.2 8.2 0.00018 26.7 3.9 33 117-151 8-40 (83)
48 KOG1667|consensus 67.9 24 0.00051 30.2 6.7 81 65-153 216-296 (320)
49 cd06479 ACD_HspB7_like Alpha c 67.0 9.8 0.00021 26.4 3.7 33 117-151 9-41 (81)
50 cd06477 ACD_HspB3_Like Alpha c 66.8 12 0.00026 26.1 4.1 30 74-103 51-82 (83)
51 PRK10743 heat shock protein Ib 65.6 18 0.0004 27.6 5.3 33 118-152 47-79 (137)
52 cd06470 ACD_IbpA-B_like Alpha- 65.4 11 0.00024 26.3 3.8 35 117-153 12-46 (90)
53 KOG2265|consensus 65.0 39 0.00084 27.1 7.1 75 66-152 21-97 (179)
54 cd06526 metazoan_ACD Alpha-cry 63.8 11 0.00024 25.7 3.6 35 116-152 7-41 (83)
55 PF04972 BON: BON domain; Int 63.2 15 0.00032 23.4 3.9 23 82-104 12-34 (64)
56 cd06471 ACD_LpsHSP_like Group 61.1 14 0.00031 25.6 3.7 30 73-102 62-91 (93)
57 PRK05518 rpl6p 50S ribosomal p 58.8 40 0.00086 27.0 6.3 45 86-148 13-57 (180)
58 TIGR03653 arch_L6P archaeal ri 57.7 49 0.0011 26.2 6.6 45 86-148 7-51 (170)
59 TIGR03654 L6_bact ribosomal pr 56.8 43 0.00094 26.6 6.2 44 86-148 11-54 (175)
60 PF00011 HSP20: Hsp20/alpha cr 56.7 21 0.00046 24.9 4.1 32 117-150 8-39 (102)
61 PF00347 Ribosomal_L6: Ribosom 56.2 28 0.00061 23.1 4.4 46 86-148 2-47 (77)
62 PRK11597 heat shock chaperone 55.5 34 0.00073 26.3 5.2 32 118-151 45-76 (142)
63 CHL00140 rpl6 ribosomal protei 55.1 49 0.0011 26.4 6.3 44 86-148 12-55 (178)
64 PRK05498 rplF 50S ribosomal pr 53.2 48 0.001 26.3 6.0 20 86-105 12-31 (178)
65 cd06476 ACD_HspB2_like Alpha c 52.7 45 0.00097 23.0 5.1 33 117-151 8-40 (83)
66 cd06469 p23_DYX1C1_like p23_li 52.1 44 0.00096 22.0 4.9 33 73-105 36-69 (78)
67 cd06464 ACD_sHsps-like Alpha-c 50.6 32 0.0007 22.8 4.1 33 70-102 53-86 (88)
68 PTZ00027 60S ribosomal protein 49.7 65 0.0014 26.0 6.2 48 86-149 13-60 (190)
69 cd06472 ACD_ScHsp26_like Alpha 48.1 31 0.00068 23.9 3.7 31 72-102 59-90 (92)
70 cd06497 ACD_alphaA-crystallin_ 47.7 65 0.0014 22.3 5.3 33 117-151 11-43 (86)
71 cd06481 ACD_HspB9_like Alpha c 47.7 28 0.00061 24.2 3.4 31 72-102 53-85 (87)
72 PF08845 SymE_toxin: Toxin Sym 44.5 34 0.00073 22.2 3.1 24 79-102 33-57 (57)
73 cd06480 ACD_HspB8_like Alpha-c 44.1 46 0.001 23.6 4.1 30 73-102 58-89 (91)
74 PF07873 YabP: YabP family; I 43.8 17 0.00037 24.0 1.7 24 81-104 20-43 (66)
75 PF08308 PEGA: PEGA domain; I 41.4 86 0.0019 20.3 4.9 38 67-104 28-67 (71)
76 PF12992 DUF3876: Domain of un 41.1 96 0.0021 22.2 5.4 49 51-101 15-68 (95)
77 PTZ00179 60S ribosomal protein 40.9 90 0.002 25.2 5.8 20 86-105 12-31 (189)
78 cd06475 ACD_HspB1_like Alpha c 38.1 60 0.0013 22.4 3.9 33 117-151 11-43 (86)
79 TIGR02856 spore_yqfC sporulati 37.9 25 0.00054 24.6 1.9 25 80-104 37-61 (85)
80 cd06498 ACD_alphaB-crystallin_ 37.7 1.2E+02 0.0025 20.9 5.3 33 117-151 8-40 (84)
81 COG5091 SGT1 Suppressor of G2 37.5 16 0.00035 31.6 1.0 78 67-152 180-257 (368)
82 TIGR02892 spore_yabP sporulati 37.3 26 0.00057 24.6 1.9 26 79-104 17-42 (85)
83 PF05309 TraE: TraE protein; 34.9 1.3E+02 0.0029 23.7 5.9 52 84-147 128-179 (187)
84 PRK11198 LysM domain/BON super 34.1 58 0.0013 24.9 3.6 24 82-105 38-61 (147)
85 KOG3413|consensus 30.2 27 0.00058 27.3 1.1 25 125-150 66-90 (156)
86 COG0071 IbpA Molecular chapero 29.4 1.1E+02 0.0024 23.1 4.5 34 73-106 100-134 (146)
87 cd00503 Frataxin Frataxin is a 29.3 57 0.0012 23.7 2.7 18 131-149 28-45 (105)
88 COG0097 RplF Ribosomal protein 28.4 2.3E+02 0.005 22.8 6.2 44 86-147 12-55 (178)
89 PF01954 DUF104: Protein of un 26.7 49 0.0011 21.7 1.7 33 131-166 3-35 (60)
90 PF14545 DBB: Dof, BCAP, and B 25.9 2.1E+02 0.0046 22.1 5.4 34 70-103 46-83 (142)
91 KOG3591|consensus 25.6 90 0.0019 24.8 3.4 28 78-105 120-149 (173)
92 TIGR03421 FeS_CyaY iron donor 24.9 75 0.0016 23.0 2.6 17 132-149 26-42 (102)
93 PF03633 Glyco_hydro_65C: Glyc 24.6 1.3E+02 0.0029 18.5 3.5 34 65-101 20-53 (54)
94 COG4004 Uncharacterized protei 24.4 1.7E+02 0.0036 21.1 4.2 34 65-102 25-58 (96)
95 PRK00446 cyaY frataxin-like pr 24.3 71 0.0015 23.3 2.4 17 133-150 29-45 (105)
96 TIGR02934 nifT_nitrog probable 23.4 96 0.0021 20.9 2.7 25 138-166 8-32 (67)
97 PF01491 Frataxin_Cyay: Fratax 22.2 74 0.0016 23.2 2.2 18 131-149 30-47 (109)
98 PF05455 GvpH: GvpH; InterPro 22.1 3.1E+02 0.0067 22.0 5.8 38 71-108 134-171 (177)
99 PF14014 DUF4230: Protein of u 22.0 1E+02 0.0022 23.3 3.0 37 67-103 40-76 (157)
100 PRK10568 periplasmic protein; 21.8 1.4E+02 0.003 24.1 3.9 24 82-105 73-96 (203)
101 PRK02913 hypothetical protein; 21.3 70 0.0015 25.0 1.9 19 131-149 107-126 (150)
102 TIGR03422 mito_frataxin fratax 20.9 79 0.0017 22.7 2.0 15 134-149 30-44 (97)
103 TIGR02761 TraE_TIGR type IV co 20.6 2.9E+02 0.0062 21.8 5.4 22 84-105 128-149 (181)
No 1
>KOG3591|consensus
Probab=99.96 E-value=5.5e-29 Score=197.97 Aligned_cols=150 Identities=42% Similarity=0.660 Sum_probs=119.3
Q ss_pred CccccccCCCCCcc--cccCCCCCCCcccCCCCCCCcCCccccccccCccceeEEcCCcEEEEEEcCCCCCCceEEEEEC
Q psy8216 18 NIYDQHFGLGYHPH--DLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVD 95 (189)
Q Consensus 18 rl~d~~fg~~~~~~--d~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~ 95 (189)
++++++|+...... +++..+... .....+.++............++..++++|.|.+||.+|+||+|+|++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~ 94 (173)
T KOG3591|consen 20 RLLDPFFGEGRRLSESRLLALPRDS-----DQMPYWRRPLSRARPLSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD 94 (173)
T ss_pred cccCcccccccccchhhhhcccccc-----ccchhhcCccccccCCcccccccccCCCcEEEEEEcccCcccceEEEeCC
Confidence 78888888876542 333222111 11122222222100023467899999999999999999999999999999
Q ss_pred CEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCCcCCCCCeEEeEeecCCccccc
Q psy8216 96 DFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQ 173 (189)
Q Consensus 96 ~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~~~~~~~r~I~I~~~~~p~~~~ 173 (189)
+.|.|+|+|+++++++|+++|+|.|+|.||++||+++|+|+||.||+|+|++|+....+. .+|.|+|++.++.+.+.
T Consensus 95 ~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~-~er~ipI~~~~~~~~~~ 171 (173)
T KOG3591|consen 95 NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD-NERSIPIEQVGPSALSQ 171 (173)
T ss_pred CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc-cceEEeEeecCcccccc
Confidence 999999999999999999999999999999999999999999999999999999987642 69999999999888543
No 2
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.93 E-value=7.7e-26 Score=161.03 Aligned_cols=84 Identities=50% Similarity=0.948 Sum_probs=79.9
Q ss_pred ceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy8216 66 SNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSI 145 (189)
Q Consensus 66 ~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I 145 (189)
++|.+++++|+|.++||||+|+||+|++.++.|+|+|++++.+++.+|..++|+|+|.||++||+++|+|+|++||+|+|
T Consensus 3 ~~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 3 SEVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred ceEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 58999999999999999999999999999999999999877777788999999999999999999999999977999999
Q ss_pred EEeC
Q psy8216 146 QAPK 149 (189)
Q Consensus 146 ~~Pk 149 (189)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9997
No 3
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.93 E-value=3.2e-25 Score=156.81 Aligned_cols=83 Identities=59% Similarity=1.033 Sum_probs=78.0
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQ 146 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~ 146 (189)
+|.+++++|+|.+|||||+++||+|++.++.|+|+|+++...++.+|+.++|.|+|.||.+||+++|+|+|++||+|+|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTIS 80 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEE
Confidence 47889999999999999999999999999999999998776677789999999999999999999999999679999999
Q ss_pred EeC
Q psy8216 147 APK 149 (189)
Q Consensus 147 ~Pk 149 (189)
+||
T Consensus 81 ~PK 83 (83)
T cd06478 81 GPR 83 (83)
T ss_pred ecC
Confidence 997
No 4
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.93 E-value=3.3e-25 Score=157.09 Aligned_cols=83 Identities=58% Similarity=1.014 Sum_probs=77.9
Q ss_pred eEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy8216 68 FGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA 147 (189)
Q Consensus 68 v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~ 147 (189)
+..++++|+|.+|||||+|+||+|++.++.|+|+|+++.+.++.+|++++|+|+|.||.+||+++|+|+|++||+|+|++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~l 81 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCG 81 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEE
Confidence 57889999999999999999999999999999999987777778899999999999999999999999995599999999
Q ss_pred eCc
Q psy8216 148 PKK 150 (189)
Q Consensus 148 Pk~ 150 (189)
||+
T Consensus 82 Pk~ 84 (84)
T cd06498 82 PRK 84 (84)
T ss_pred eCC
Confidence 985
No 5
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.92 E-value=5.4e-25 Score=155.69 Aligned_cols=82 Identities=48% Similarity=0.807 Sum_probs=77.0
Q ss_pred eEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy8216 68 FGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA 147 (189)
Q Consensus 68 v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~ 147 (189)
+..++++|.|.+|||||+|+||+|++.++.|+|+|+++.+.++.++++++|+|+|.||.+||+++|+|+|+.||+|+|++
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQA 81 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEe
Confidence 56789999999999999999999999999999999997777778899999999999999999999999995599999999
Q ss_pred eC
Q psy8216 148 PK 149 (189)
Q Consensus 148 Pk 149 (189)
||
T Consensus 82 Pr 83 (83)
T cd06476 82 PR 83 (83)
T ss_pred cC
Confidence 97
No 6
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.91 E-value=1.1e-23 Score=149.82 Aligned_cols=84 Identities=48% Similarity=0.820 Sum_probs=78.7
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILS 144 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~ 144 (189)
..+|++++++|+|.++||||++++|+|++.++.|+|+|+++...+++++..++|+|+|.||.+||+++|+|+|.+||+|+
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 46899999999999999999999999999999999999987766677888899999999999999999999994499999
Q ss_pred EEEe
Q psy8216 145 IQAP 148 (189)
Q Consensus 145 I~~P 148 (189)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 7
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.91 E-value=1.1e-23 Score=151.22 Aligned_cols=84 Identities=38% Similarity=0.655 Sum_probs=78.5
Q ss_pred ceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy8216 66 SNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSI 145 (189)
Q Consensus 66 ~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I 145 (189)
-.+.+++++|.|.+||.||+||||+|++.++.|+|+|+|+++.+++|+++++|+|+|.||++||+++|+|+|++||+|+|
T Consensus 8 ~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~I 87 (91)
T cd06480 8 NPPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLII 87 (91)
T ss_pred CCCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEE
Confidence 34567889999999999999999999999999999999998777789999999999999999999999999988999999
Q ss_pred EEeC
Q psy8216 146 QAPK 149 (189)
Q Consensus 146 ~~Pk 149 (189)
++|.
T Consensus 88 eaP~ 91 (91)
T cd06480 88 EAPQ 91 (91)
T ss_pred EcCC
Confidence 9984
No 8
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.90 E-value=1.7e-23 Score=147.97 Aligned_cols=80 Identities=39% Similarity=0.760 Sum_probs=74.5
Q ss_pred EEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 69 GLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 69 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
-+++++|+|.++||||+||||+|++.++.|+|+|+++.+.++.++..++|+|+|.||.+||.++|+|+|++||+|+|+++
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 36789999999999999999999999999999999877666788989999999999999999999999868999999987
No 9
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.90 E-value=1.1e-22 Score=147.87 Aligned_cols=97 Identities=29% Similarity=0.576 Sum_probs=79.5
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCce-EE----EEEEEEEECCCCcccCCcEEEcCCCC
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGF-IS----REFTRRYRIPDSVDAQAIASKLSSDG 141 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~-~~----~~F~R~~~LP~~vd~~~i~A~ls~dG 141 (189)
||.+++++|.|.++||||.+++|+|+++++.|+|+|++.....+..+ .. +.|.|+|.||.++|.++|+|.| +||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCC
Confidence 68999999999999999999999999999999999998833333333 33 5999999999999999999999 999
Q ss_pred EEEEEEeCcCCcCCCCCeEEeEe
Q psy8216 142 ILSIQAPKKATKEGAGERSIPVV 164 (189)
Q Consensus 142 vL~I~~Pk~~~~~~~~~r~I~I~ 164 (189)
+|+|++||....+....++|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999988754578999985
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.90 E-value=2.5e-23 Score=146.48 Aligned_cols=80 Identities=31% Similarity=0.539 Sum_probs=73.2
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQ 146 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~ 146 (189)
||.+++++|+|.+|||||+||||+|+++++.|+|+|+++.. .+...++|+|+|.||.+||+++|+|+|++||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~---~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLAS---DGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEecc---CCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEE
Confidence 68999999999999999999999999999999999987532 244678999999999999999999997689999999
Q ss_pred EeC
Q psy8216 147 APK 149 (189)
Q Consensus 147 ~Pk 149 (189)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 986
No 11
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.90 E-value=5.2e-23 Score=158.22 Aligned_cols=97 Identities=19% Similarity=0.474 Sum_probs=83.0
Q ss_pred ccceeE-EcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEE-----EEEEEEEECCCCcccCCcEEEc
Q psy8216 64 GVSNFG-LDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFIS-----REFTRRYRIPDSVDAQAIASKL 137 (189)
Q Consensus 64 ~~~~v~-~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~-----~~F~R~~~LP~~vd~~~i~A~l 137 (189)
|.+||+ +++++|+|.++|||++++||+|.++++.|+|+|+++...++.+|.+ ++|+|+|.||.+||.++ |+|
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE
Confidence 578999 4899999999999999999999999999999998765544455543 48999999999999995 999
Q ss_pred CCCCEEEEEEeCcCCcCCCCCeEEeEe
Q psy8216 138 SSDGILSIQAPKKATKEGAGERSIPVV 164 (189)
Q Consensus 138 s~dGvL~I~~Pk~~~~~~~~~r~I~I~ 164 (189)
+||||+|++||..++. ...|+|+|+
T Consensus 113 -~dGVL~I~lPK~~~~~-~~~r~I~I~ 137 (137)
T PRK10743 113 -VNGLLYIDLERVIPEA-KKPRRIEIN 137 (137)
T ss_pred -eCCEEEEEEeCCCccc-cCCeEEeeC
Confidence 9999999999974432 468899884
No 12
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.90 E-value=6e-23 Score=158.60 Aligned_cols=98 Identities=13% Similarity=0.371 Sum_probs=82.2
Q ss_pred ccceeEE-cCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEE-----EEEEEEEECCCCcccCCcEEEc
Q psy8216 64 GVSNFGL-DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFIS-----REFTRRYRIPDSVDAQAIASKL 137 (189)
Q Consensus 64 ~~~~v~~-~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~-----~~F~R~~~LP~~vd~~~i~A~l 137 (189)
|.+||++ ++++|+|.++|||++++||+|.+++|.|+|+|+++...++.+|++ ++|+|+|.||.+||.+ +|+|
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~ 110 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF 110 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE
Confidence 6899998 578999999999999999999999999999998754444444544 4899999999999998 6999
Q ss_pred CCCCEEEEEEeCcCCcCCCCCeEEeEee
Q psy8216 138 SSDGILSIQAPKKATKEGAGERSIPVVQ 165 (189)
Q Consensus 138 s~dGvL~I~~Pk~~~~~~~~~r~I~I~~ 165 (189)
+||||+|++||..++. .++|+|+|+.
T Consensus 111 -~nGVL~I~lPK~~~~~-~~~rkI~I~~ 136 (142)
T PRK11597 111 -VNGLLHIDLIRNEPEA-IAPQRIAISE 136 (142)
T ss_pred -cCCEEEEEEeccCccc-cCCcEEEECC
Confidence 9999999999974432 3678888754
No 13
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-22 Score=156.61 Aligned_cols=100 Identities=21% Similarity=0.502 Sum_probs=87.2
Q ss_pred CccceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEee--eeCCCce-----EEEEEEEEEECCCCcccCCcEE
Q psy8216 63 SGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEE--RSDQHGF-----ISREFTRRYRIPDSVDAQAIAS 135 (189)
Q Consensus 63 ~~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~--~~~~~~~-----~~~~F~R~~~LP~~vd~~~i~A 135 (189)
.|.+||+++++.|.|.++||||+++||+|+++++.|+|+|+++. ..++.++ ..+.|+|+|.||..||++.++|
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A 119 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA 119 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence 47999999999999999999999999999999999999999864 2334444 3469999999999999999999
Q ss_pred EcCCCCEEEEEEeCcCCcCCCCCeEEeEe
Q psy8216 136 KLSSDGILSIQAPKKATKEGAGERSIPVV 164 (189)
Q Consensus 136 ~ls~dGvL~I~~Pk~~~~~~~~~r~I~I~ 164 (189)
+| +||+|+|++||.++++ ...+.|.|+
T Consensus 120 ~~-~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 120 KY-KNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred Ee-eCcEEEEEEecccccc-ccCceeecC
Confidence 99 8999999999998763 457777763
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=5.5e-22 Score=141.43 Aligned_cols=81 Identities=36% Similarity=0.648 Sum_probs=71.3
Q ss_pred EEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCC--Cc--eEEEEEEEEEECCCCcccCCcEEEcCCCCEEE
Q psy8216 69 GLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQ--HG--FISREFTRRYRIPDSVDAQAIASKLSSDGILS 144 (189)
Q Consensus 69 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~--~~--~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~ 144 (189)
.+.+++|+|.+|||||+++||+|++.++.|+|+|+++....+ .. +..++|+|+|.||.+||.++|+|+|++||+|+
T Consensus 3 ~~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 3 KDGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CCccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 357889999999999999999999999999999998654322 22 34579999999999999999999998899999
Q ss_pred EEEeC
Q psy8216 145 IQAPK 149 (189)
Q Consensus 145 I~~Pk 149 (189)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99996
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=1.3e-21 Score=137.98 Aligned_cols=78 Identities=59% Similarity=1.019 Sum_probs=71.1
Q ss_pred CCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEeC
Q psy8216 72 KEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPK 149 (189)
Q Consensus 72 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk 149 (189)
+++|.|.+|||||+++||+|+++++.|+|+|+++...+..++..++|+|+|.||.+||+++|+|+|+.||+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 369999999999999999999999999999998766555678889999999999999999999999434999999997
No 16
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.86 E-value=2e-21 Score=139.49 Aligned_cols=84 Identities=25% Similarity=0.497 Sum_probs=72.5
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEEC-CEEEEEEEEeeee--CCCceE-----EEEEEEEEECCCCcccCCcEEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVD-DFIVVHAKHEERS--DQHGFI-----SREFTRRYRIPDSVDAQAIASK 136 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~e~~~--~~~~~~-----~~~F~R~~~LP~~vd~~~i~A~ 136 (189)
.+||++++++|.|.++||||+++||+|.+++ +.|+|+|++.... +...+. .++|+|+|.||.+||.+.|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 3789999999999999999999999999996 5899999864322 222232 3589999999999999999999
Q ss_pred cCCCCEEEEEEeC
Q psy8216 137 LSSDGILSIQAPK 149 (189)
Q Consensus 137 ls~dGvL~I~~Pk 149 (189)
| +||+|+|++||
T Consensus 81 ~-~nGvL~I~lPK 92 (92)
T cd06472 81 L-ENGVLTVTVPK 92 (92)
T ss_pred E-ECCEEEEEecC
Confidence 9 89999999997
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.85 E-value=5.9e-21 Score=136.07 Aligned_cols=81 Identities=23% Similarity=0.448 Sum_probs=71.4
Q ss_pred EEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCC---CceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy8216 69 GLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQ---HGFISREFTRRYRIPDSVDAQAIASKLSSDGILSI 145 (189)
Q Consensus 69 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~---~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I 145 (189)
..+++.|+|.+|||||+++||+|++.++.|+|+|+++...++ ..+..++|.|+|.||.+||.++|+|+|.++|+|+|
T Consensus 4 ~~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 4 SCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 467899999999999999999999999999999998654332 24677899999999999999999999977779999
Q ss_pred EEeC
Q psy8216 146 QAPK 149 (189)
Q Consensus 146 ~~Pk 149 (189)
..|.
T Consensus 84 ~~~~ 87 (87)
T cd06482 84 ETPC 87 (87)
T ss_pred eeCC
Confidence 9984
No 18
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.84 E-value=1.4e-20 Score=135.12 Aligned_cols=83 Identities=29% Similarity=0.572 Sum_probs=72.5
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeC---C-CceE-----EEEEEEEEECCCCcccCCcEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSD---Q-HGFI-----SREFTRRYRIPDSVDAQAIAS 135 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~---~-~~~~-----~~~F~R~~~LP~~vd~~~i~A 135 (189)
.+||+++++.|+|.++|||++++||+|.+.++.|+|+|+++...+ . ..+. .+.|.|+|.|| ++|.+.|+|
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 589999999999999999999999999999999999998864321 1 1233 34799999998 799999999
Q ss_pred EcCCCCEEEEEEeC
Q psy8216 136 KLSSDGILSIQAPK 149 (189)
Q Consensus 136 ~ls~dGvL~I~~Pk 149 (189)
+| +||+|+|++||
T Consensus 81 ~~-~dGvL~I~lPK 93 (93)
T cd06471 81 KY-ENGVLKITLPK 93 (93)
T ss_pred EE-ECCEEEEEEcC
Confidence 99 89999999997
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.83 E-value=8.4e-20 Score=130.76 Aligned_cols=83 Identities=19% Similarity=0.498 Sum_probs=71.5
Q ss_pred ccceeEEcC-CcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeC-CCceE-----EEEEEEEEECCCCcccCCcEEE
Q psy8216 64 GVSNFGLDK-EGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSD-QHGFI-----SREFTRRYRIPDSVDAQAIASK 136 (189)
Q Consensus 64 ~~~~v~~~~-~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~-~~~~~-----~~~F~R~~~LP~~vd~~~i~A~ 136 (189)
|.+||++++ +.|+|.++|||+++++|+|.++++.|+|+|+++.... +..|. .++|.|+|.||.+||.+ +|+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 468999874 9999999999999999999999999999998865543 23333 46899999999999975 899
Q ss_pred cCCCCEEEEEEeC
Q psy8216 137 LSSDGILSIQAPK 149 (189)
Q Consensus 137 ls~dGvL~I~~Pk 149 (189)
| +||+|+|++|+
T Consensus 79 ~-~~GvL~I~l~~ 90 (90)
T cd06470 79 L-ENGLLTIDLER 90 (90)
T ss_pred E-eCCEEEEEEEC
Confidence 9 89999999985
No 20
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=6e-19 Score=123.69 Aligned_cols=82 Identities=29% Similarity=0.549 Sum_probs=72.7
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCC------CceEEEEEEEEEECCCCcccCCcEEEcCCC
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQ------HGFISREFTRRYRIPDSVDAQAIASKLSSD 140 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~------~~~~~~~F~R~~~LP~~vd~~~i~A~ls~d 140 (189)
++.+++++|.|.++||||++++|+|++.++.|.|+|++...... .+...+.|.|+|.||.++|.+.++|.| .|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-EN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eC
Confidence 46788999999999999999999999999999999998754432 234457999999999999999999999 79
Q ss_pred CEEEEEEeC
Q psy8216 141 GILSIQAPK 149 (189)
Q Consensus 141 GvL~I~~Pk 149 (189)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.54 E-value=5.5e-14 Score=94.99 Aligned_cols=80 Identities=29% Similarity=0.531 Sum_probs=71.1
Q ss_pred eEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy8216 68 FGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA 147 (189)
Q Consensus 68 v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~ 147 (189)
+.++++.|.|.+++||+.+++|+|.+.++.|.|+|++..... .+...+.|.+.+.||..+|++.++|++ .+|+|+|++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l 78 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-RERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITL 78 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc-ceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEE
Confidence 357789999999999999999999999999999998764433 445567899999999999999999999 789999999
Q ss_pred eC
Q psy8216 148 PK 149 (189)
Q Consensus 148 Pk 149 (189)
||
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 97
No 22
>KOG0710|consensus
Probab=99.51 E-value=2.3e-14 Score=116.32 Aligned_cols=99 Identities=20% Similarity=0.450 Sum_probs=80.7
Q ss_pred ccceeEEcCCcEEEEEEcCCCCCCceEEEEECC-EEEEEEEEeeeeCC----Cce-----EEEEEEEEEECCCCcccCCc
Q psy8216 64 GVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDD-FIVVHAKHEERSDQ----HGF-----ISREFTRRYRIPDSVDAQAI 133 (189)
Q Consensus 64 ~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~e~~~~~----~~~-----~~~~F~R~~~LP~~vd~~~i 133 (189)
...+|.+..+.|.+.+++||+++++|+|.++++ .|+|+|++....++ ..+ ..+.|.|++.||++++.+.|
T Consensus 85 ~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~i 164 (196)
T KOG0710|consen 85 VPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEI 164 (196)
T ss_pred CCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHH
Confidence 566789999999999999999999999999976 79999987654432 112 22489999999999999999
Q ss_pred EEEcCCCCEEEEEEeCcCCc-CCCCCeEEeE
Q psy8216 134 ASKLSSDGILSIQAPKKATK-EGAGERSIPV 163 (189)
Q Consensus 134 ~A~ls~dGvL~I~~Pk~~~~-~~~~~r~I~I 163 (189)
+|.| .||+|+|++||..+. +....+.|.|
T Consensus 165 kA~~-~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 165 KAEM-ENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred HHHh-hCCeEEEEEecccccccCCccceeec
Confidence 9999 899999999999873 1133444444
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.23 E-value=6.6e-11 Score=81.62 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=64.2
Q ss_pred EEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 69 GLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 69 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
.++++.+.|.+++||+++++++|.++++.|.|+| ..|.+.+.||..||+++.++++ .+|.|.|+++
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-------------~~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~ 67 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-------------PPYLFELDLAAPIDDEKSSAKI-GNGVLVFTLV 67 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcC-------------CCEEEEEeCcccccccccEEEE-eCCEEEEEEE
Confidence 5778999999999999999999999999999988 1378999999999999999999 8999999999
Q ss_pred CcCC
Q psy8216 149 KKAT 152 (189)
Q Consensus 149 k~~~ 152 (189)
|...
T Consensus 68 K~~~ 71 (78)
T cd06469 68 KKEP 71 (78)
T ss_pred eCCC
Confidence 9753
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.91 E-value=1.1e-08 Score=81.36 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=63.4
Q ss_pred cCccceeEEcCC-cEEEEEEcCCCCCCc-eEEEEEC--CEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEc
Q psy8216 62 ESGVSNFGLDKE-GLKVNLDVQQFKPEE-IDVKVVD--DFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKL 137 (189)
Q Consensus 62 ~~~~~~v~~~~~-~~~v~~dlpG~~~ed-I~V~v~~--~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~l 137 (189)
..+.+++.+.++ .++|.++|||+++++ |+|.++. +.|+|+... .+.+++.||.. +++.++++|
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~------------~~~krv~L~~~-~~e~~~~t~ 156 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE------------KYLKRVALPWP-DPEITSATF 156 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC------------ceEeeEecCCC-ccceeeEEE
Confidence 356788998777 699999999999888 9999995 555553321 26789999977 688899999
Q ss_pred CCCCEEEEEEeCcCCc
Q psy8216 138 SSDGILSIQAPKKATK 153 (189)
Q Consensus 138 s~dGvL~I~~Pk~~~~ 153 (189)
+||||.|.+-+.+..
T Consensus 157 -nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 157 -NNGILEIRIRRTEES 171 (177)
T ss_pred -eCceEEEEEeecCCC
Confidence 899999999988755
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.86 E-value=1.7e-08 Score=69.34 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=66.0
Q ss_pred EEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 69 GLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 69 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
.++++.+.|.+.+||..++++.|.+.++.|.|++... ++ ..|...+.|+..|+++..++++ .+|.|.|+++
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~----~~----~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~ 72 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG----GG----KEYLLEGELFGPIDPEESKWTV-EDRKIEITLK 72 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC----CC----CceEEeeEccCccchhhcEEEE-eCCEEEEEEE
Confidence 4678999999999999999999999999999998753 11 3478889999999999999999 7999999999
Q ss_pred CcCC
Q psy8216 149 KKAT 152 (189)
Q Consensus 149 k~~~ 152 (189)
|..+
T Consensus 73 K~~~ 76 (84)
T cd06463 73 KKEP 76 (84)
T ss_pred ECCC
Confidence 9864
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.58 E-value=3.1e-07 Score=63.85 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=66.9
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQ 146 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~ 146 (189)
|++++++.+.|.+.+||+.++++.|.+.++.|.|++... ++ ..|...+.|...|+++..++++ .+|.|.|+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~----~~----~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~ 71 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP----GG----SEYQLELDLFGPIDPEQSKVSV-LPTKVEIT 71 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC----CC----CeEEEecccccccCchhcEEEE-eCeEEEEE
Confidence 467889999999999999999999999999999987642 11 2477788999999999999999 79999999
Q ss_pred EeCcCC
Q psy8216 147 APKKAT 152 (189)
Q Consensus 147 ~Pk~~~ 152 (189)
+.|...
T Consensus 72 L~K~~~ 77 (84)
T cd06466 72 LKKAEP 77 (84)
T ss_pred EEcCCC
Confidence 999763
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.11 E-value=8.3e-05 Score=50.30 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=62.4
Q ss_pred cceeEEcCCcEEEEEEcCCC--CCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQF--KPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGI 142 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~--~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGv 142 (189)
..++.++++.+.|.+.+++. ++++|+|.+.++.|.|+..... + ..|.-...|...|+++..+.++ .++.
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~-----~---~~~~~~~~L~~~I~~~~s~~~~-~~~~ 72 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGD-----G---KEYLLEGELFGEIDPDESTWKV-KDNK 72 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETT-----S---CEEEEEEEBSS-BECCCEEEEE-ETTE
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccC-----C---ceEEEEEEEeeeEcchhcEEEE-ECCE
Confidence 46789999999999999665 5999999999999999865321 1 3477788899999999999999 7889
Q ss_pred EEEEEeC
Q psy8216 143 LSIQAPK 149 (189)
Q Consensus 143 L~I~~Pk 149 (189)
|.|++.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999976
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.82 E-value=0.00027 Score=51.73 Aligned_cols=77 Identities=9% Similarity=0.143 Sum_probs=65.6
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILS 144 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~ 144 (189)
..+++++.+.+.|.+.+++. +++.|.+..+.|.|++.... + + +.|.-.+.|...|+++..+.++ .++.|.
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~--~-~----~~y~~~~~L~~~I~pe~s~~~v-~~~kve 71 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG--G-G----KKYEFDLEFYKEIDPEESKYKV-TGRQIE 71 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC--C-C----eeEEEEeEhhhhccccccEEEe-cCCeEE
Confidence 56789999999999999998 89999999999999985421 1 1 3366777999999999999999 679999
Q ss_pred EEEeCcC
Q psy8216 145 IQAPKKA 151 (189)
Q Consensus 145 I~~Pk~~ 151 (189)
|++.|..
T Consensus 72 I~L~K~~ 78 (108)
T cd06465 72 FVLRKKE 78 (108)
T ss_pred EEEEECC
Confidence 9999986
No 29
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=97.71 E-value=5.2e-06 Score=54.39 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=23.8
Q ss_pred cccCCCCCCCCCC-CccccccCCCCCcccccCCCC
Q psy8216 5 PYLLNELEDLAHP-NIYDQHFGLGYHPHDLLQHFP 38 (189)
Q Consensus 5 P~~~r~~~~~~~p-rl~d~~fg~~~~~~d~~~~~~ 38 (189)
|.+.|+|-++.+| |+|||.||+++.+.|+|....
T Consensus 8 Pw~rR~~~~~~~PsRiFDQ~FGEgL~d~DLf~~~~ 42 (59)
T PF00525_consen 8 PWFRRPLWPFFFPSRIFDQNFGEGLFDSDLFPSSS 42 (59)
T ss_dssp HHHHGGGSSSS-SCHHHCTTSEESSTTTT---BT-
T ss_pred cccccccccccCchhhHHHhhccccCHhhhccccc
Confidence 3455674458899 999999999999999998763
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.69 E-value=0.00038 Score=48.51 Aligned_cols=76 Identities=11% Similarity=0.234 Sum_probs=63.6
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQ 146 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~ 146 (189)
|++++++...|.+.++|+.++++.|++.++.|.+++... ++ ..|.-.+.|-..|++++.+.+. ..+.+.|.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~ 71 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP---SG-----NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIK 71 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC---CC-----CcEEEeeecCceecchhcEEEE-eCcEEEEE
Confidence 457788899999999999999999999999999998652 11 1256677899999999888888 57889999
Q ss_pred EeCcC
Q psy8216 147 APKKA 151 (189)
Q Consensus 147 ~Pk~~ 151 (189)
+.|..
T Consensus 72 L~K~~ 76 (84)
T cd06489 72 LKKTE 76 (84)
T ss_pred EEcCC
Confidence 99975
No 31
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.67 E-value=0.00023 Score=61.32 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=59.1
Q ss_pred cCCcEEEEEEcCCC-CCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEc-CCCCEEEEEEe
Q psy8216 71 DKEGLKVNLDVQQF-KPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKL-SSDGILSIQAP 148 (189)
Q Consensus 71 ~~~~~~v~~dlpG~-~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~l-s~dGvL~I~~P 148 (189)
..+.++|.+.|||+ +..+|.|.|.++.|.|..... .|.=.+.||..||.+..+|.+ .+.++|+|++|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~-----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP-----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC-----------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 36889999999999 889999999999999986442 256679999999999999998 45699999998
Q ss_pred C
Q psy8216 149 K 149 (189)
Q Consensus 149 k 149 (189)
.
T Consensus 328 V 328 (328)
T PF08190_consen 328 V 328 (328)
T ss_pred C
Confidence 3
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.41 E-value=0.0012 Score=45.70 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=59.4
Q ss_pred eeEEcCCcEEEEEEcC-CCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCC-CEEE
Q psy8216 67 NFGLDKEGLKVNLDVQ-QFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSD-GILS 144 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~d-GvL~ 144 (189)
.+.++++.+.|.+.+| ++.+++|+|.+..+.|.|+... +. + .+. -.|...||++...-++ .+ ..|.
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~-----~~-~---~l~--~~L~~~I~~~~s~w~~-~~~~~v~ 69 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG-----GE-P---LLD--GELYAKVKVDESTWTL-EDGKLLE 69 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC-----CC-c---eEc--CcccCceeEcCCEEEE-eCCCEEE
Confidence 3567889999999997 7899999999999999998742 11 1 122 3588999999988888 67 8999
Q ss_pred EEEeCcCC
Q psy8216 145 IQAPKKAT 152 (189)
Q Consensus 145 I~~Pk~~~ 152 (189)
|+++|.++
T Consensus 70 i~L~K~~~ 77 (85)
T cd06467 70 ITLEKRNE 77 (85)
T ss_pred EEEEECCC
Confidence 99999864
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.25 E-value=0.004 Score=43.84 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=65.5
Q ss_pred ceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEE
Q psy8216 66 SNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSI 145 (189)
Q Consensus 66 ~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I 145 (189)
.|++++++...|.+.+.|..+++++|.++.+.|.|+..... + ..|.-.+.|-..|+++..+-.. ..+.+.|
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-----~---~~y~~~l~L~~~I~~~~s~~~v-~~~kvei 73 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-----N---KEFQLDIELWGVIDVEKSSVNM-LPTKVEI 73 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-----C---ceEEEEeeccceEChhHcEEEe-cCcEEEE
Confidence 47889999999999999999999999999999998765431 1 2367777999999999988888 6888999
Q ss_pred EEeCcCC
Q psy8216 146 QAPKKAT 152 (189)
Q Consensus 146 ~~Pk~~~ 152 (189)
++.|.+.
T Consensus 74 ~L~K~~~ 80 (87)
T cd06488 74 KLRKAEP 80 (87)
T ss_pred EEEeCCC
Confidence 9999863
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.17 E-value=0.0053 Score=43.28 Aligned_cols=78 Identities=14% Similarity=0.259 Sum_probs=62.5
Q ss_pred ceeEEcCCcEEEEEEcCCCCC---CceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEE-ECCCCcccCCcEEEcCCCC
Q psy8216 66 SNFGLDKEGLKVNLDVQQFKP---EEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRY-RIPDSVDAQAIASKLSSDG 141 (189)
Q Consensus 66 ~~v~~~~~~~~v~~dlpG~~~---edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~-~LP~~vd~~~i~A~ls~dG 141 (189)
.+++++++.+.|.+.+|+..+ +++.|++..+.|.|++... .| ..|.-.+ .|-..|+++..+..+ .++
T Consensus 4 y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~-----~~---~~~~~~~~~L~~~I~~e~s~~~~-~~~ 74 (92)
T cd06468 4 YAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDL-----NG---KNYRFTINRLLKKIDPEKSSFKV-KTD 74 (92)
T ss_pred eeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECC-----CC---cEEEEEehHhhCccCccccEEEE-eCC
Confidence 457888999999999999876 9999999999999988431 11 1244445 488999999999998 678
Q ss_pred EEEEEEeCcCC
Q psy8216 142 ILSIQAPKKAT 152 (189)
Q Consensus 142 vL~I~~Pk~~~ 152 (189)
.+.|++.|..+
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 89999999864
No 35
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.06 E-value=0.0066 Score=42.48 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred eeEEcCCcEEEEEEcC-CCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCC-EEE
Q psy8216 67 NFGLDKEGLKVNLDVQ-QFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDG-ILS 144 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dG-vL~ 144 (189)
+++++.+...|.+.+| |..++|++|++..+.|.|..+.+ . . + -.-.|...|+++.-+=++ .+| .|.
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~-----~-~----~-~~g~L~~~I~~d~Stw~i-~~~~~l~ 69 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ-----A-P----L-LEGKLYSSIDHESSTWII-KENKSLE 69 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC-----C-e----E-EeCcccCcccccCcEEEE-eCCCEEE
Confidence 3578899999999995 99999999999999999975311 1 0 1 233788999999977777 566 699
Q ss_pred EEEeCcCC
Q psy8216 145 IQAPKKAT 152 (189)
Q Consensus 145 I~~Pk~~~ 152 (189)
|.+.|..+
T Consensus 70 i~L~K~~~ 77 (85)
T cd06493 70 VSLIKKDE 77 (85)
T ss_pred EEEEECCC
Confidence 99999763
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.37 E-value=0.078 Score=38.93 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=60.5
Q ss_pred ccceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEE
Q psy8216 64 GVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGIL 143 (189)
Q Consensus 64 ~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL 143 (189)
|.+...+..+.+.|++.+++ .++++|+++.+.|.++|... ++. .+.-.+.|=..|+++.-+-.. ..-.+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~---~g~-----~y~~~l~l~~~I~pe~Sk~~v-~~r~v 70 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG---DNV-----KIYNEIELYDRVDPNDSKHKR-TDRSI 70 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC---CCc-----EEEEEEEeecccCcccCeEEe-CCceE
Confidence 56778889999999999998 68999999999999998431 122 244567888889999877776 45567
Q ss_pred EEEEeCcCC
Q psy8216 144 SIQAPKKAT 152 (189)
Q Consensus 144 ~I~~Pk~~~ 152 (189)
.|.+.|.+.
T Consensus 71 e~~L~K~~~ 79 (106)
T cd00237 71 LCCLRKGKE 79 (106)
T ss_pred EEEEEeCCC
Confidence 888888753
No 37
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.34 E-value=0.051 Score=38.97 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=59.2
Q ss_pred ccceeEEcCCcEEEEEEcC-CCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCE
Q psy8216 64 GVSNFGLDKEGLKVNLDVQ-QFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGI 142 (189)
Q Consensus 64 ~~~~v~~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGv 142 (189)
....+.++.+.+.|.+.+| |.+++|+.|.+..+.|.|.-+.+. +..+ .|...|+++.-.=++ .+|.
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~------~l~G------~L~~~I~~destWtl-ed~k 72 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQE------VLKG------KLFDSVVADECTWTL-EDRK 72 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEE------EEcC------cccCccCcccCEEEE-ECCc
Confidence 3456789999999999997 899999999999999999752110 1111 578889999888888 5665
Q ss_pred -EEEEEeCcC
Q psy8216 143 -LSIQAPKKA 151 (189)
Q Consensus 143 -L~I~~Pk~~ 151 (189)
|.|.+.|..
T Consensus 73 ~l~I~L~K~~ 82 (93)
T cd06494 73 LIRIVLTKSN 82 (93)
T ss_pred EEEEEEEeCC
Confidence 899999975
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.06 E-value=0.12 Score=45.35 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=65.5
Q ss_pred ccceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEE
Q psy8216 64 GVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGIL 143 (189)
Q Consensus 64 ~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL 143 (189)
...+++++++.++|.+-+.|+.++++.|.+..+.|.|+.... .+ ..|.-.+.|-..|+++..+.++ .--.+
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~Ki 227 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVP---GE-----DAYHLQPRLFGKIIPDKCKYEV-LSTKI 227 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecC---CC-----cceeecccccccccccccEEEE-ecceE
Confidence 467899999999999999999999999999999999986542 11 1244557898999999988888 44588
Q ss_pred EEEEeCcCC
Q psy8216 144 SIQAPKKAT 152 (189)
Q Consensus 144 ~I~~Pk~~~ 152 (189)
.|++.|...
T Consensus 228 ei~l~K~~~ 236 (356)
T PLN03088 228 EIRLAKAEP 236 (356)
T ss_pred EEEEecCCC
Confidence 999998864
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=94.99 E-value=0.46 Score=33.34 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=55.0
Q ss_pred eeEEcCCcEEEEEEcCC--CCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEc-CCCCEE
Q psy8216 67 NFGLDKEGLKVNLDVQQ--FKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKL-SSDGIL 143 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG--~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~l-s~dGvL 143 (189)
|++++++..+|.+-..+ ...+++.+....+.|.|+-... + ..|...+.|=..|+++. +.++ +.-|.+
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-----~----~~~~~~~~L~~~I~~~~-~~~~~~~~~KV 71 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-----D----KSYLLHLDLSNEVQWPC-EVRISTETGKI 71 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-----C----ceEEEeeeccccCCCCc-EEEEcccCceE
Confidence 67899999999999885 4555555665677898875432 1 22667778888898775 5554 137899
Q ss_pred EEEEeCcCC
Q psy8216 144 SIQAPKKAT 152 (189)
Q Consensus 144 ~I~~Pk~~~ 152 (189)
.|++.|.++
T Consensus 72 EI~L~K~e~ 80 (87)
T cd06490 72 ELVLKKKEP 80 (87)
T ss_pred EEEEEcCCC
Confidence 999999764
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.04 E-value=0.5 Score=33.25 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=52.7
Q ss_pred EEcCCcEEEEEEcC-C--CCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCC-EEE
Q psy8216 69 GLDKEGLKVNLDVQ-Q--FKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDG-ILS 144 (189)
Q Consensus 69 ~~~~~~~~v~~dlp-G--~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dG-vL~ 144 (189)
..+.+...|.+.+| + .++.+|+|++..+.|.|.-+.+ .-++.+ .|...|+++.-.=++ ++| .|.
T Consensus 4 ~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~-----~~~i~G------~L~~~V~~des~Wtl-ed~~~l~ 71 (87)
T cd06492 4 TQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ-----PPIIDG------ELYNEVKVEESSWLI-EDGKVVT 71 (87)
T ss_pred EeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC-----ceEEeC------cccCcccccccEEEE-eCCCEEE
Confidence 45667788889885 3 8999999999999999965321 102222 567888888877778 776 899
Q ss_pred EEEeCcC
Q psy8216 145 IQAPKKA 151 (189)
Q Consensus 145 I~~Pk~~ 151 (189)
|++-|..
T Consensus 72 i~L~K~~ 78 (87)
T cd06492 72 VNLEKIN 78 (87)
T ss_pred EEEEECC
Confidence 9999974
No 41
>KOG1309|consensus
Probab=90.63 E-value=1 Score=36.34 Aligned_cols=79 Identities=8% Similarity=0.153 Sum_probs=58.7
Q ss_pred ccceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEE
Q psy8216 64 GVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGIL 143 (189)
Q Consensus 64 ~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL 143 (189)
..-|++++....+|.+-.+++.++|+.|.+..+.|.|..+-.. +. .|.-...|-..|.++..+-.. ---.+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~---g~-----~~~l~~~L~~~I~pe~~s~k~-~stKV 74 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPS---GS-----EYNLQLKLYHEIIPEKSSFKV-FSTKV 74 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCC---ch-----hhhhhHHhcccccccceeeEe-eeeeE
Confidence 3568899999999999999999999999999999988765431 11 133333466777777766554 33467
Q ss_pred EEEEeCcC
Q psy8216 144 SIQAPKKA 151 (189)
Q Consensus 144 ~I~~Pk~~ 151 (189)
.|+++|..
T Consensus 75 EI~L~K~~ 82 (196)
T KOG1309|consen 75 EITLAKAE 82 (196)
T ss_pred EEEecccc
Confidence 88988854
No 42
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=90.46 E-value=3.7 Score=29.89 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=56.2
Q ss_pred ceeEEcCCcEEEEEEcC-C-CCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCE-
Q psy8216 66 SNFGLDKEGLKVNLDVQ-Q-FKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGI- 142 (189)
Q Consensus 66 ~~v~~~~~~~~v~~dlp-G-~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGv- 142 (189)
..+..+-+...|.+.+| | .+..+|.|++..+.|.|.-+.... +.-++.+ .|...|+++.-.=++ +||.
T Consensus 7 Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~--~~~~i~G------~L~~~V~~des~Wtl-ed~~~ 77 (102)
T cd06495 7 YTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGG--EKVLMEG------EFTHKINTENSLWSL-EPGKC 77 (102)
T ss_pred eEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCC--CceEEeC------cccCcccCccceEEE-eCCCE
Confidence 44678889999999999 5 468999999999999997642100 0012222 577888888877778 7765
Q ss_pred EEEEEeCcC
Q psy8216 143 LSIQAPKKA 151 (189)
Q Consensus 143 L~I~~Pk~~ 151 (189)
|.|++-|..
T Consensus 78 l~I~L~K~~ 86 (102)
T cd06495 78 VLLSLSKCS 86 (102)
T ss_pred EEEEEEECC
Confidence 899999974
No 43
>KOG3158|consensus
Probab=80.63 E-value=7.4 Score=31.18 Aligned_cols=80 Identities=10% Similarity=0.162 Sum_probs=59.3
Q ss_pred CccceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCE
Q psy8216 63 SGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGI 142 (189)
Q Consensus 63 ~~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGv 142 (189)
.|.+-+.+..+-+.+++.|+. ..+.+|.++...|+++|+.. .+. ..+.-.+.|=..||+++.+-+-+ +.
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~--~d~-----~~~~~~ief~~eIdpe~sk~k~~--~r 75 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSG--ADN-----HKYENEIEFFDEIDPEKSKHKRT--SR 75 (180)
T ss_pred CCcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccC--CCc-----eeeEEeeehhhhcCHhhcccccc--ce
Confidence 355666777888888998885 45677788888999999764 122 34677788889999999887774 77
Q ss_pred EEEEEeCcCCc
Q psy8216 143 LSIQAPKKATK 153 (189)
Q Consensus 143 L~I~~Pk~~~~ 153 (189)
+++.++++...
T Consensus 76 ~if~i~~K~e~ 86 (180)
T KOG3158|consen 76 SIFCILRKKEL 86 (180)
T ss_pred EEEEEEEcccc
Confidence 77777776543
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=80.23 E-value=19 Score=27.24 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=47.9
Q ss_pred ccceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEE----EEEEEEEECCCCcccCCcEEEcCC
Q psy8216 64 GVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFIS----REFTRRYRIPDSVDAQAIASKLSS 139 (189)
Q Consensus 64 ~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~----~~F~R~~~LP~~vd~~~i~A~ls~ 139 (189)
..+.|...++ ..+.+.. ..+.++++.+++.|.|+.+....--..++.. ..-.=.+.||++...++|.... .
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~ 140 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-S 140 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-c
Confidence 4455555433 4444444 2126889999999999887221110112211 1345567889988888888888 6
Q ss_pred CCEEEEEE
Q psy8216 140 DGILSIQA 147 (189)
Q Consensus 140 dGvL~I~~ 147 (189)
.|-+.|.-
T Consensus 141 ~G~i~i~~ 148 (166)
T PF13349_consen 141 SGDITIED 148 (166)
T ss_pred cccEEEEc
Confidence 88777654
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=76.64 E-value=4 Score=28.78 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=30.0
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCCc
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATK 153 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~~ 153 (189)
.|.-+..|| ++++++|+-++ .+|.|+|++-+....
T Consensus 9 ~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~~~ 43 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKV-KDGKVQVSAERENRY 43 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEeccc
Confidence 467788897 89999999999 899999999986543
No 46
>PF14913 DPCD: DPCD protein family
Probab=72.29 E-value=33 Score=27.90 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=57.1
Q ss_pred CccceeEEcCCcEEEEE-EcCCCCCCceEEEEEC--CEEEEEEEEeeeeCCCceEEEEEEEEEECCC------CcccCCc
Q psy8216 63 SGVSNFGLDKEGLKVNL-DVQQFKPEEIDVKVVD--DFIVVHAKHEERSDQHGFISREFTRRYRIPD------SVDAQAI 133 (189)
Q Consensus 63 ~~~~~v~~~~~~~~v~~-dlpG~~~edI~V~v~~--~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~------~vd~~~i 133 (189)
+|..-=.++...|+..+ +|| +.++--+|.+++ +.++|+-.. ..|.++|.+|+ ..+.+.+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN-----------KKYyKk~~IPDl~R~~l~l~~~~l 153 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN-----------KKYYKKFSIPDLDRCGLPLEQSAL 153 (194)
T ss_pred CCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC-----------ccceeEecCCcHHhhCCCcchhhc
Confidence 44444567788888876 566 788888999984 568886432 24788999996 2578889
Q ss_pred EEEcCCCCEEEEEEeCcC
Q psy8216 134 ASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 134 ~A~ls~dGvL~I~~Pk~~ 151 (189)
+-.+ .+..|+|+-.|..
T Consensus 154 s~~h-~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 154 SFAH-QNNTLIISYKKPK 170 (194)
T ss_pred eeee-ecCeEEEEecCcH
Confidence 9999 8999999998753
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=70.16 E-value=8.2 Score=26.65 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=28.6
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
.|.=.+.|| +++++.|+-++ .+|.|+|++-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEce
Confidence 478889997 99999999999 7999999997543
No 48
>KOG1667|consensus
Probab=67.91 E-value=24 Score=30.20 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=67.6
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILS 144 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~ 144 (189)
.-|+..++..++|.+...|.-|+.-.|..++..|.|+-.+.. + -++|.-.+.|=.-|+++.-++.+ -.-...
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~---g----na~fd~d~kLwgvvnve~s~v~m-~~tkVE 287 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF---G----NASFDLDYKLWGVVNVEESSVVM-GETKVE 287 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC---C----CceeeccceeeeeechhhceEEe-ecceEE
Confidence 347889999999999999999999999999999988766531 1 14688888888889999999999 577889
Q ss_pred EEEeCcCCc
Q psy8216 145 IQAPKKATK 153 (189)
Q Consensus 145 I~~Pk~~~~ 153 (189)
|+++|.++-
T Consensus 288 Isl~k~ep~ 296 (320)
T KOG1667|consen 288 ISLKKAEPG 296 (320)
T ss_pred EEEeccCCC
Confidence 999998764
No 49
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=67.03 E-value=9.8 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
.|.=.+.|| +++++.|+-++ .+|.|+|+.-+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 477788997 89999999999 8999999987753
No 50
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=66.81 E-value=12 Score=26.10 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=27.0
Q ss_pred cEEEEEEcC-CCCCCceEEEE-ECCEEEEEEE
Q psy8216 74 GLKVNLDVQ-QFKPEEIDVKV-VDDFIVVHAK 103 (189)
Q Consensus 74 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~ 103 (189)
.|.=.+.|| +++++.|+=++ .+|.|+|+|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 777889998 89999999998 7999999985
No 51
>PRK10743 heat shock protein IbpA; Provisional
Probab=65.56 E-value=18 Score=27.58 Aligned_cols=33 Identities=6% Similarity=0.210 Sum_probs=26.7
Q ss_pred EEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCC
Q psy8216 118 FTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKAT 152 (189)
Q Consensus 118 F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~ 152 (189)
|.-+..|| +++.++|.-++ .+|+|+|+.-+...
T Consensus 47 ~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~~ 79 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITA-QDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECcc
Confidence 45556676 89999999999 89999999976543
No 52
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=65.36 E-value=11 Score=26.26 Aligned_cols=35 Identities=6% Similarity=0.236 Sum_probs=30.2
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCCc
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATK 153 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~~ 153 (189)
.|.=.+.|| +++.++|+-.+ .+|.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcccc
Confidence 477789998 69999999999 899999999887654
No 53
>KOG2265|consensus
Probab=65.03 E-value=39 Score=27.14 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=55.2
Q ss_pred ceeEEcCCcEEEEEEcC-CC-CCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEE
Q psy8216 66 SNFGLDKEGLKVNLDVQ-QF-KPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGIL 143 (189)
Q Consensus 66 ~~v~~~~~~~~v~~dlp-G~-~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL 143 (189)
..+..+=..+.|.+-|| |+ +..+|.|.+....|.|.-+.+.. ++.+ .|...|+.+...=++ ++|.+
T Consensus 21 y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~-----ildG------~L~~~vk~des~Wti-Ed~k~ 88 (179)
T KOG2265|consen 21 YTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPP-----ILDG------ELSHSVKVDESTWTI-EDGKM 88 (179)
T ss_pred eeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCc-----eecC------ccccccccccceEEe-cCCEE
Confidence 34555556677887775 88 99999999999999998665431 2222 355677888888889 89999
Q ss_pred EEEEeCcCC
Q psy8216 144 SIQAPKKAT 152 (189)
Q Consensus 144 ~I~~Pk~~~ 152 (189)
.|.+-++..
T Consensus 89 i~i~l~K~~ 97 (179)
T KOG2265|consen 89 IVILLKKSN 97 (179)
T ss_pred EEEEeeccc
Confidence 888887755
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=63.82 E-value=11 Score=25.68 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=30.6
Q ss_pred EEEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCC
Q psy8216 116 REFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKAT 152 (189)
Q Consensus 116 ~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~ 152 (189)
..|.=.+.|| ++.+++|+-.+ .++.|+|++-+...
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeee
Confidence 3588899998 59999999999 79999999988754
No 55
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=63.24 E-value=15 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.0
Q ss_pred CCCCCCceEEEEECCEEEEEEEE
Q psy8216 82 QQFKPEEIDVKVVDDFIVVHAKH 104 (189)
Q Consensus 82 pG~~~edI~V~v~~~~L~I~g~~ 104 (189)
++++..+|+|.+.++.+.++|.-
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v 34 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEV 34 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEE
T ss_pred cccCCCeEEEEEECCEEEEEeeC
Confidence 36777899999999999999975
No 56
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=61.09 E-value=14 Score=25.58 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=26.1
Q ss_pred CcEEEEEEcCCCCCCceEEEEECCEEEEEE
Q psy8216 73 EGLKVNLDVQQFKPEEIDVKVVDDFIVVHA 102 (189)
Q Consensus 73 ~~~~v~~dlpG~~~edI~V~v~~~~L~I~g 102 (189)
..|.-.+.+|.+.++.|+-++.+|.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 456777889999999999999999999974
No 57
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=58.84 E-value=40 Score=27.03 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=29.8
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
|+.++|+++++.++|+|.+-+ ..+.|.-+ .|...+ ++|.|.|+..
T Consensus 13 P~~V~v~i~~~~v~VkGp~G~-----------L~~~~~~~------~v~i~~-~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKGE-----------LTRDFWYP------GVTISV-EDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCeE-----------EEEEecCC------cEEEEE-ECCEEEEEEC
Confidence 789999999999999996532 23333211 344556 6777777754
No 58
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=57.71 E-value=49 Score=26.23 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=30.2
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
|++++|++.++.|+|+|.+-+ ..+.+. |. .|...+ ++|.|.|+..
T Consensus 7 P~~V~v~i~~~~i~vkGp~G~-----------L~~~~~-~~-----~v~i~~-~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKGE-----------VTRELW-YP-----GIEISV-EDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCeE-----------EEEEEe-CC-----cEEEEE-eCCEEEEEeC
Confidence 688999999999999997532 333332 22 344566 6777777754
No 59
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=56.75 E-value=43 Score=26.55 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=29.7
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
|++|+|.++++.|+|+|..- +.++.+ |. .+...+ +++.|.|+..
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G-----------~l~~~l--~~-----~i~i~~-~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKG-----------ELSRTL--HP-----GVTVKV-EDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCe-----------EEEEEc--CC-----CeEEEE-ECCEEEEEec
Confidence 68999999999999999653 233333 33 334456 5677777654
No 60
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=56.72 E-value=21 Score=24.91 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=27.1
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCc
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKK 150 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~ 150 (189)
+|.=.+.|| +++.++|+-++ .+|.|+|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 478889998 88999999999 899999999988
No 61
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=56.24 E-value=28 Score=23.06 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=29.7
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
|+.++|.+.++.+++.|..- ..++.||..|. |+... +++.+++...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g-------------~l~~~~~~~v~---v~~~~-~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG-------------ELSRPIPPGVK---VEIKV-EDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS-------------EEEEEETTTEE---EEEEE-ETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE-------------eEEEECCCCee---EEEEc-CCCceEEEEC
Confidence 67899999999999998542 34556665533 22224 4666666554
No 62
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=55.47 E-value=34 Score=26.35 Aligned_cols=32 Identities=6% Similarity=0.213 Sum_probs=26.2
Q ss_pred EEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 118 FTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 118 F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
|.-...|| +++.++|.-.+ .+|+|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 55566776 88999999999 8999999997654
No 63
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=55.07 E-value=49 Score=26.35 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=29.4
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAP 148 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~P 148 (189)
|+.++|.++++.|+|+|..-+ .. ..||. .|.... +++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~-----------l~--~~~~~-----~v~i~~-~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGT-----------LS--RKIPD-----LITIEI-QDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEE-----------EE--EECCC-----CeEEEE-eCCEEEEEcC
Confidence 689999999999999996532 22 23443 234456 6677777654
No 64
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=53.24 E-value=48 Score=26.33 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=17.7
Q ss_pred CCceEEEEECCEEEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHE 105 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e 105 (189)
|++++|.++++.|+|+|..-
T Consensus 12 P~~V~v~~~~~~v~vkGp~G 31 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKG 31 (178)
T ss_pred CCCCEEEEECCEEEEECCCE
Confidence 68999999999999999653
No 65
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=52.69 E-value=45 Score=23.03 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.7
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
.|.-.+.| ++++++.|+.++ .||.|+|+.-+..
T Consensus 8 ~y~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDV-CHFTPDEITVRT-VDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 46777888 578899999999 8999999998753
No 66
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=52.10 E-value=44 Score=21.95 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=28.4
Q ss_pred CcEEEEEEcCC-CCCCceEEEEECCEEEEEEEEe
Q psy8216 73 EGLKVNLDVQQ-FKPEEIDVKVVDDFIVVHAKHE 105 (189)
Q Consensus 73 ~~~~v~~dlpG-~~~edI~V~v~~~~L~I~g~~e 105 (189)
+.|.+.+++++ +.+++.+.++.++.|.|+-...
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 67999999985 7999999999999999986543
No 67
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=50.64 E-value=32 Score=22.79 Aligned_cols=33 Identities=6% Similarity=0.249 Sum_probs=28.7
Q ss_pred EcCCcEEEEEEcC-CCCCCceEEEEECCEEEEEE
Q psy8216 70 LDKEGLKVNLDVQ-QFKPEEIDVKVVDDFIVVHA 102 (189)
Q Consensus 70 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g 102 (189)
.....|.-.+.+| ++.++.++..+.++.|+|..
T Consensus 53 ~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~ 86 (88)
T cd06464 53 RSYGSFSRSFRLPEDVDPDKIKASLENGVLTITL 86 (88)
T ss_pred EeCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEE
Confidence 3467899999998 68999999999999999975
No 68
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=49.72 E-value=65 Score=26.03 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEeC
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPK 149 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk 149 (189)
|++++|++.++.|+|+|..-+ .++.| |.. ...|.... ++|.|.|+.+.
T Consensus 13 P~~V~V~i~~~~v~VkGp~G~-----------L~~~~--~~~--~~~i~i~~-~~~~i~v~~~~ 60 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYGE-----------LTRSF--RHL--PVDIKLSK-DGKYIKVEMWF 60 (190)
T ss_pred CCCCEEEEECCEEEEECCCce-----------EEEEe--cCC--CceEEEEe-CCCEEEEEeCC
Confidence 799999999999999996531 23332 221 02455566 67877777553
No 69
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=48.11 E-value=31 Score=23.87 Aligned_cols=31 Identities=6% Similarity=0.157 Sum_probs=27.4
Q ss_pred CCcEEEEEEcC-CCCCCceEEEEECCEEEEEE
Q psy8216 72 KEGLKVNLDVQ-QFKPEEIDVKVVDDFIVVHA 102 (189)
Q Consensus 72 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g 102 (189)
...|.-.+.|| ++.++.|+-.+.+|.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 45788899999 68999999999999999974
No 70
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=47.72 E-value=65 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=27.6
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
.|.=.+.| ++++++.|.-++ .+|+|+|+.-+.+
T Consensus 11 ~~~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDV-KHFSPEDLTVKV-LDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEEC-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 47777888 578999999999 7999999997543
No 71
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=47.70 E-value=28 Score=24.21 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCcEEEEEEcC-CCCCCceEEEE-ECCEEEEEE
Q psy8216 72 KEGLKVNLDVQ-QFKPEEIDVKV-VDDFIVVHA 102 (189)
Q Consensus 72 ~~~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g 102 (189)
...|.=.+.|| +++++.|+-.+ .++.|+|++
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 46788899998 69999999999 799999986
No 72
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=44.50 E-value=34 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEcCCCCC-CceEEEEECCEEEEEE
Q psy8216 79 LDVQQFKP-EEIDVKVVDDFIVVHA 102 (189)
Q Consensus 79 ~dlpG~~~-edI~V~v~~~~L~I~g 102 (189)
+.-.||.. +.|+|++..+.|+|+.
T Consensus 33 L~~aGF~~G~~v~V~v~~g~lvIt~ 57 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPGCLVITP 57 (57)
T ss_pred hHHhCCCCCCEEEEEEECCEEEEeC
Confidence 45578965 8899999999999973
No 73
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=44.12 E-value=46 Score=23.59 Aligned_cols=30 Identities=7% Similarity=0.359 Sum_probs=26.6
Q ss_pred CcEEEEEEcC-CCCCCceEEEEE-CCEEEEEE
Q psy8216 73 EGLKVNLDVQ-QFKPEEIDVKVV-DDFIVVHA 102 (189)
Q Consensus 73 ~~~~v~~dlp-G~~~edI~V~v~-~~~L~I~g 102 (189)
..|.=.+.|| ++++++|+-.+. ++.|+|++
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5677788998 899999999999 99999987
No 74
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=43.80 E-value=17 Score=24.01 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.7
Q ss_pred cCCCCCCceEEEEECCEEEEEEEE
Q psy8216 81 VQQFKPEEIDVKVVDDFIVVHAKH 104 (189)
Q Consensus 81 lpG~~~edI~V~v~~~~L~I~g~~ 104 (189)
+=.|+.+.|.|+...+.|.|.|+.
T Consensus 20 I~~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 20 ILSFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEEEETTEEEEEETTEEEEEEEEE
T ss_pred EEEECCCEEEEEeCCEEEEEECce
Confidence 345789999999999999999975
No 75
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=41.43 E-value=86 Score=20.30 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred eeE-EcCCcEEEEEEcCCCCCCceEEEEE-CCEEEEEEEE
Q psy8216 67 NFG-LDKEGLKVNLDVQQFKPEEIDVKVV-DDFIVVHAKH 104 (189)
Q Consensus 67 ~v~-~~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~ 104 (189)
.+. -..+.|.|.+..+|+.+..-+|.+. +....|+..-
T Consensus 28 ~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 28 TLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred eeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 344 5577899999999999988888888 6777777653
No 76
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=41.09 E-value=96 Score=22.24 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=35.6
Q ss_pred CcCCccccccccCccceeEEcCCcEEEEEEcCCC-----CCCceEEEEECCEEEEE
Q psy8216 51 YVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQF-----KPEEIDVKVVDDFIVVH 101 (189)
Q Consensus 51 ~~~p~~~~~~~~~~~~~v~~~~~~~~v~~dlpG~-----~~edI~V~v~~~~L~I~ 101 (189)
+...|.+. ...|.+.|+.+++.|.|.+--+.. +++...|.-+++.+-|.
T Consensus 15 ~~G~W~Sv--~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~ 68 (95)
T PF12992_consen 15 ICGEWESV--NGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIE 68 (95)
T ss_pred eEEEeEcc--CCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEe
Confidence 34445421 235889999999999998866554 77888888778877775
No 77
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=40.91 E-value=90 Score=25.17 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=17.7
Q ss_pred CCceEEEEECCEEEEEEEEe
Q psy8216 86 PEEIDVKVVDDFIVVHAKHE 105 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e 105 (189)
|+.++|+++++.|+|+|..-
T Consensus 12 P~~V~V~i~~~~ItVkGpkG 31 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG 31 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc
Confidence 78999999999999999653
No 78
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=38.09 E-value=60 Score=22.43 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
.|.=.+.|| +++++.|.-.+ .++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKT-KDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEE-ECCEEEEEEEECc
Confidence 477788884 89999999999 7999999997754
No 79
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=37.92 E-value=25 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=21.5
Q ss_pred EcCCCCCCceEEEEECCEEEEEEEE
Q psy8216 80 DVQQFKPEEIDVKVVDDFIVVHAKH 104 (189)
Q Consensus 80 dlpG~~~edI~V~v~~~~L~I~g~~ 104 (189)
++-.|+.+.|.|+...+.|.|+|+.
T Consensus 37 ~I~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 37 GLVVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred ceEEECCCEEEEEcCceEEEEEccc
Confidence 4455899999999999999999974
No 80
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=37.67 E-value=1.2e+02 Score=20.92 Aligned_cols=33 Identities=9% Similarity=0.296 Sum_probs=27.4
Q ss_pred EEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcC
Q psy8216 117 EFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKA 151 (189)
Q Consensus 117 ~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~ 151 (189)
.|.=.+.| ++++++.|+-.+ .+|.|+|+.-+..
T Consensus 8 ~~~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDV-KHFSPEELKVKV-LGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEEC-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 47777888 689999999999 7999999996543
No 81
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=37.54 E-value=16 Score=31.60 Aligned_cols=78 Identities=6% Similarity=-0.024 Sum_probs=57.1
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEE
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQ 146 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~ 146 (189)
+..++.+...|.+--|-++.|+|.+.+++|+|.|+-+-+. . +-.|.-...|-..|+|+...-.+ ---++.|+
T Consensus 180 d~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~----~---~~~~~~~~~Ly~ev~P~~~s~k~-fsK~~e~~ 251 (368)
T COG5091 180 DFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRR----L---RLWNDITISLYKEVYPDIRSIKS-FSKRVEVH 251 (368)
T ss_pred eccccceeEEEEEecCCCCccccceeecCCcceeeeeccc----c---chHHHhhhhhhhhcCcchhhhhh-cchhheeh
Confidence 4456666666766678899999999999999999876432 1 11245567788899999877665 33678888
Q ss_pred EeCcCC
Q psy8216 147 APKKAT 152 (189)
Q Consensus 147 ~Pk~~~ 152 (189)
+.|...
T Consensus 252 l~KV~~ 257 (368)
T COG5091 252 LRKVEM 257 (368)
T ss_pred hhhhhh
Confidence 888754
No 82
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=37.34 E-value=26 Score=24.64 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.8
Q ss_pred EEcCCCCCCceEEEEECCEEEEEEEE
Q psy8216 79 LDVQQFKPEEIDVKVVDDFIVVHAKH 104 (189)
Q Consensus 79 ~dlpG~~~edI~V~v~~~~L~I~g~~ 104 (189)
-+|-.|+++.|.|.+..+.|+|+|+.
T Consensus 17 ~~V~sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 17 KEVISFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred ceEEEECCCEEEEEeCcEEEEEEcce
Confidence 44556889999999999999999974
No 83
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=34.93 E-value=1.3e+02 Score=23.73 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy8216 84 FKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA 147 (189)
Q Consensus 84 ~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~ 147 (189)
|.++++.+...++.+.|+|....-..+..... =.+.|. +.-.| .+|.|.|+-
T Consensus 128 F~~~~i~~d~~~~~V~V~G~l~t~~g~~~~~~--~~~~y~---------~~~~~-~~g~~~L~~ 179 (187)
T PF05309_consen 128 FYPKSIEVDPETLTVFVTGTLKTWIGDKKVSS--EDKTYR---------LQFKY-RNGRLWLKS 179 (187)
T ss_pred EEEeEEEEecCCCEEEEEEEEEEEECCccccc--eeEEEE---------EEEEE-eCCEEEEee
Confidence 45577777778889999997543332221111 122332 23456 688887754
No 84
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=34.08 E-value=58 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCCCCceEEEEECCEEEEEEEEe
Q psy8216 82 QQFKPEEIDVKVVDDFIVVHAKHE 105 (189)
Q Consensus 82 pG~~~edI~V~v~~~~L~I~g~~e 105 (189)
.|....+|+|.++++.++++|.-.
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeC
Confidence 578888999999999999999754
No 85
>KOG3413|consensus
Probab=30.20 E-value=27 Score=27.28 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=18.2
Q ss_pred CCCcccCCcEEEcCCCCEEEEEEeCc
Q psy8216 125 PDSVDAQAIASKLSSDGILSIQAPKK 150 (189)
Q Consensus 125 P~~vd~~~i~A~ls~dGvL~I~~Pk~ 150 (189)
-+.+..+.--+.| .||||+|.++-.
T Consensus 66 ~e~~~~~~~Dv~y-~~GVLTl~lg~~ 90 (156)
T KOG3413|consen 66 AEEVPGEGFDVDY-ADGVLTLKLGSV 90 (156)
T ss_pred HhhcCcccccccc-ccceEEEEecCc
Confidence 3445555566789 899999999944
No 86
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=1.1e+02 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=26.5
Q ss_pred CcEEEEEEcC-CCCCCceEEEEECCEEEEEEEEee
Q psy8216 73 EGLKVNLDVQ-QFKPEEIDVKVVDDFIVVHAKHEE 106 (189)
Q Consensus 73 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~e~ 106 (189)
..|.=.+.|| +++++.++-++.||.|+|.-.+.+
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~ 134 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAE 134 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCcEEEEEEeccc
Confidence 4566677777 467888999999999999876543
No 87
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.26 E-value=57 Score=23.71 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.2
Q ss_pred CCcEEEcCCCCEEEEEEeC
Q psy8216 131 QAIASKLSSDGILSIQAPK 149 (189)
Q Consensus 131 ~~i~A~ls~dGvL~I~~Pk 149 (189)
..+.+.+ .+|||+|+++-
T Consensus 28 ~d~D~e~-~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVET-QGGVLTLTFGN 45 (105)
T ss_pred cCEeeec-cCCEEEEEECC
Confidence 5677888 79999999983
No 88
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=28.35 E-value=2.3e+02 Score=22.75 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEE
Q psy8216 86 PEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA 147 (189)
Q Consensus 86 ~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~ 147 (189)
|+.++|+++++.++|+|.+- +-+..|+..+ |.-.. +|+++.+..
T Consensus 12 P~gV~V~i~~~~v~vkGpkG-------------eL~~~~~~~~----v~v~~-~~~~~vv~~ 55 (178)
T COG0097 12 PAGVTVSIEGQVVTVKGPKG-------------ELTREFHDNV----VKVEV-EDNILVVRP 55 (178)
T ss_pred CCCeEEEEeccEEEEECCCc-------------EEEEEecCcc----eEEEe-cCCEEEEee
No 89
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=26.70 E-value=49 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=15.8
Q ss_pred CCcEEEcCCCCEEEEEEeCcCCcCCCCCeEEeEeec
Q psy8216 131 QAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQT 166 (189)
Q Consensus 131 ~~i~A~ls~dGvL~I~~Pk~~~~~~~~~r~I~I~~~ 166 (189)
..|.|.| +||+|.--=|..-++ ...-.|.|...
T Consensus 3 ~~I~aiY-e~GvlkPl~~~~L~E--g~~V~i~I~~~ 35 (60)
T PF01954_consen 3 KVIEAIY-ENGVLKPLEPVDLPE--GEEVKITIEEE 35 (60)
T ss_dssp --EEEEE-ETTEEEECS-----T--TEEEEEEE---
T ss_pred ceEEEEE-ECCEEEECCCCCCCC--CCEEEEEEecc
Confidence 4689999 999998655444322 23344555443
No 90
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=25.88 E-value=2.1e+02 Score=22.10 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=26.5
Q ss_pred EcCCcEEEEEEcCCC---CCCceEEEEE-CCEEEEEEE
Q psy8216 70 LDKEGLKVNLDVQQF---KPEEIDVKVV-DDFIVVHAK 103 (189)
Q Consensus 70 ~~~~~~~v~~dlpG~---~~edI~V~v~-~~~L~I~g~ 103 (189)
.-.+.|++.+++|.+ .+-.+.|++. |+.+.=+.+
T Consensus 46 ~~~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ 83 (142)
T PF14545_consen 46 KWENPYTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQ 83 (142)
T ss_pred eEECCEEEEEECchhcCCCCceEEEEEEECCEEEEEEe
Confidence 345789999999999 9999999999 554444443
No 91
>KOG3591|consensus
Probab=25.62 E-value=90 Score=24.81 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.7
Q ss_pred EEEcC-CCCCCceEEEEE-CCEEEEEEEEe
Q psy8216 78 NLDVQ-QFKPEEIDVKVV-DDFIVVHAKHE 105 (189)
Q Consensus 78 ~~dlp-G~~~edI~V~v~-~~~L~I~g~~e 105 (189)
..-|| |++++.|+=.+. +|.|+|+|...
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCC
Confidence 45566 899999999999 89999999654
No 92
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=24.92 E-value=75 Score=23.00 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=14.4
Q ss_pred CcEEEcCCCCEEEEEEeC
Q psy8216 132 AIASKLSSDGILSIQAPK 149 (189)
Q Consensus 132 ~i~A~ls~dGvL~I~~Pk 149 (189)
.+.+.+ .+|||+|+++.
T Consensus 26 d~D~e~-~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCER-AGGVLTLTFEN 42 (102)
T ss_pred Ceeeec-CCCEEEEEECC
Confidence 477888 79999999984
No 93
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=24.59 E-value=1.3e+02 Score=18.54 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=17.1
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVH 101 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ 101 (189)
..+|.-+.+.+.|.+.--+ +.|+|.+.|..++++
T Consensus 20 ~l~v~i~~~~v~v~~~~g~---~~l~i~v~g~~~~L~ 53 (54)
T PF03633_consen 20 WLEVEITHEKVTVTLLSGD---APLTIKVYGEEVTLK 53 (54)
T ss_dssp EEEEEEETTEEEEEEEESS-----EEEEETT------
T ss_pred EEEEEEECCEEEEEEccCC---ccEEEEECCCccccC
Confidence 4566677777777666332 577777777766654
No 94
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.41 E-value=1.7e+02 Score=21.07 Aligned_cols=34 Identities=9% Similarity=0.165 Sum_probs=28.4
Q ss_pred cceeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEE
Q psy8216 65 VSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHA 102 (189)
Q Consensus 65 ~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g 102 (189)
..+|.+.+| .|.+..||.+ .|+|+.+++.|.|.+
T Consensus 25 g~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t 58 (96)
T COG4004 25 GWTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNT 58 (96)
T ss_pred CeeEeeccc--EEEEecCCce--EEEEecccceEEEec
Confidence 467888888 7778899985 688999999999988
No 95
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=24.27 E-value=71 Score=23.26 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.4
Q ss_pred cEEEcCCCCEEEEEEeCc
Q psy8216 133 IASKLSSDGILSIQAPKK 150 (189)
Q Consensus 133 i~A~ls~dGvL~I~~Pk~ 150 (189)
+.+.+ .+|||+|+++..
T Consensus 29 ~D~e~-~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCER-NGGVLTLTFENG 45 (105)
T ss_pred eeeec-cCCEEEEEECCC
Confidence 67888 799999999853
No 96
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=23.40 E-value=96 Score=20.91 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=19.0
Q ss_pred CCCCEEEEEEeCcCCcCCCCCeEEeEeec
Q psy8216 138 SSDGILSIQAPKKATKEGAGERSIPVVQT 166 (189)
Q Consensus 138 s~dGvL~I~~Pk~~~~~~~~~r~I~I~~~ 166 (189)
+.+|.|.+-+||+.-+ +..|.++..
T Consensus 8 ~~~g~l~~YvpKKDLE----E~Vv~~e~~ 32 (67)
T TIGR02934 8 NRAGELSAYVPKKDLE----EVIVSVEKE 32 (67)
T ss_pred CCCCCEEEEEECCcch----hheeeeecC
Confidence 4678899999999766 566776643
No 97
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.20 E-value=74 Score=23.17 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCcEEEcCCCCEEEEEEeC
Q psy8216 131 QAIASKLSSDGILSIQAPK 149 (189)
Q Consensus 131 ~~i~A~ls~dGvL~I~~Pk 149 (189)
..+.+.+ .+|||+|+++.
T Consensus 30 ~d~d~e~-~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVER-SGGVLTIEFPD 47 (109)
T ss_dssp STEEEEE-ETTEEEEEETT
T ss_pred CceEEEc-cCCEEEEEECC
Confidence 3678999 79999999954
No 98
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=22.10 E-value=3.1e+02 Score=22.04 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.6
Q ss_pred cCCcEEEEEEcCCCCCCceEEEEECCEEEEEEEEeeee
Q psy8216 71 DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERS 108 (189)
Q Consensus 71 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~e~~~ 108 (189)
.++.|+=.+.||--..+-+++++.|+.|.|.-++.++.
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCC
Confidence 34445557778866788889999999999998765443
No 99
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=22.00 E-value=1e+02 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=30.0
Q ss_pred eeEEcCCcEEEEEEcCCCCCCceEEEEECCEEEEEEE
Q psy8216 67 NFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAK 103 (189)
Q Consensus 67 ~v~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~ 103 (189)
-+........+-+|+.++++++|.+.=+++.|+|.--
T Consensus 40 ~~~~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP 76 (157)
T PF14014_consen 40 LLVIYPGTVKAGIDLSKIKEEDIEVDEDGKTITITLP 76 (157)
T ss_pred EEEEEEEEEEEEEEhHHCCcceEEEcCCCCEEEEECC
Confidence 3456666778888999999999998888999999853
No 100
>PRK10568 periplasmic protein; Provisional
Probab=21.84 E-value=1.4e+02 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCCCCceEEEEECCEEEEEEEEe
Q psy8216 82 QQFKPEEIDVKVVDDFIVVHAKHE 105 (189)
Q Consensus 82 pG~~~edI~V~v~~~~L~I~g~~e 105 (189)
++++..+|+|.+.++.++++|.-.
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeC
Confidence 567788999999999999999754
No 101
>PRK02913 hypothetical protein; Provisional
Probab=21.33 E-value=70 Score=24.97 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=14.3
Q ss_pred CCcEEE-cCCCCEEEEEEeC
Q psy8216 131 QAIASK-LSSDGILSIQAPK 149 (189)
Q Consensus 131 ~~i~A~-ls~dGvL~I~~Pk 149 (189)
+.|++- +|+||+|+|.+-+
T Consensus 107 ~~Ik~mNLSEDgiLVi~Le~ 126 (150)
T PRK02913 107 SRIKAMNLSEDGILVIDLEQ 126 (150)
T ss_pred HHhhhcccccCCEEEEEecC
Confidence 444443 7899999999865
No 102
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.93 E-value=79 Score=22.71 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=12.6
Q ss_pred EEEcCCCCEEEEEEeC
Q psy8216 134 ASKLSSDGILSIQAPK 149 (189)
Q Consensus 134 ~A~ls~dGvL~I~~Pk 149 (189)
.+.+ .+|||+|+++.
T Consensus 30 D~e~-~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEY-SSGVLTLELPS 44 (97)
T ss_pred cccc-CCCEEEEEECC
Confidence 6778 79999999964
No 103
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=20.64 E-value=2.9e+02 Score=21.84 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=16.9
Q ss_pred CCCCceEEEEECCEEEEEEEEe
Q psy8216 84 FKPEEIDVKVVDDFIVVHAKHE 105 (189)
Q Consensus 84 ~~~edI~V~v~~~~L~I~g~~e 105 (189)
|.+.+|++...++.+.|+|...
T Consensus 128 F~~~~i~v~~~~~~V~V~G~l~ 149 (181)
T TIGR02761 128 FYPKSVEWNPQEGTVKVRGHLK 149 (181)
T ss_pred EEeeeEEEccCCCEEEEEEEEE
Confidence 4567788888889999999654
Done!